BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024886
(261 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3K1Z|A Chain A, Crystal Structure Of Human Haloacid Dehalogenase-like
Hydrolase Domain Containing 3 (hdhd3)
Length = 263
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 104/198 (52%), Gaps = 11/198 (5%)
Query: 56 DAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAA---PWPE-KLRYEGDGR 111
D TLL+L P+ E YA+ AR +GL V+ + +++GFR+A+ A +P L + R
Sbjct: 7 DVKDTLLRLRHPLGEAYATKARAHGLEVEPSALEQGFRQAYRAQSHSFPNYGLSHGLTSR 66
Query: 112 PFWRLVVSEA---TGCTNDDYF----EEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVA 164
+W VV + G + E++Y+ ++ W + GA ++ + G+++A
Sbjct: 67 QWWLDVVLQTFHLAGVQDAQAVAPIAEQLYKDFSHPCTWQVLDGAEDTLRECRTRGLRLA 126
Query: 165 VVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGD 224
V+SNFD RL +L L + + FD V+ S G KPDPRIF+ AL E H+GD
Sbjct: 127 VISNFDRRLEGILGGLGLREHFDFVLTSEAAGWPKPDPRIFQEALRLAHXEPVVAAHVGD 186
Query: 225 DEKADKQGANSLGIDCWL 242
+ D QG ++G +L
Sbjct: 187 NYLCDYQGPRAVGXHSFL 204
>pdb|2ZG6|A Chain A, Crystal Structure Of Hypothetical Protein; Probable 2-
Haloalkanoic Acid Dehalogenase From Sulfolobus Tokodaii
pdb|2ZG6|B Chain B, Crystal Structure Of Hypothetical Protein; Probable 2-
Haloalkanoic Acid Dehalogenase From Sulfolobus Tokodaii
Length = 220
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 94/219 (42%), Gaps = 28/219 (12%)
Query: 50 YDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPW--------- 100
Y AVL+D G TL+ E + + G ++D + + + KA
Sbjct: 3 YKAVLVDFGNTLVGFKPVFYEKVYQVLKDNGYDLDLRKVFRAYAKAXGXINYPDEDGLEH 62
Query: 101 --PEKLRYEGDGRPFWRLVVSEATGCTNDDYFEEVYEYYAKGEAWHLPHGAYQSILLLKD 158
P+ Y P RLV D GEA+ L + + LK
Sbjct: 63 VDPKDFLYILGIYPSERLVKELKEADIRD------------GEAF-LYDDTLEFLEGLKS 109
Query: 159 AGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASR 218
G K+A+VSN R++ LL+ ++ FDA+ +S E+ KP+P+IF AL ++ A
Sbjct: 110 NGYKLALVSNASPRVKTLLEKFDLKKYFDALALSYEIKAVKPNPKIFGFALAKVGYPA-- 167
Query: 219 TVHIGDDEKADKQGANSLGIDCWLWGIDVKTFSDVQNRI 257
VH+GD + D GA +D L + DV++R+
Sbjct: 168 -VHVGDIYELDYIGAKRSYVDPILLD-RYDFYPDVRDRV 204
>pdb|3KZX|A Chain A, Crystal Structure Of A Had-Superfamily Hydrolase From
Ehrlichia Chaffeensis At 1.9a Resolution
Length = 231
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 9/137 (6%)
Query: 130 FEEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFD-TRLRKLLKDLNVIDLFDA 188
+E E K + + L GA + + LK+ + +A+VSN + RLR + N+ FD+
Sbjct: 89 YENSLEKSQKSDNFMLNDGAIELLDTLKENNITMAIVSNKNGERLRSEIHHKNLTHYFDS 148
Query: 189 VVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWG---- 244
++ S + G KP P AAL +++E S+ V D +D Q A G +G
Sbjct: 149 IIGSGDTGTIKPSPEPVLAALTNINIEPSKEVFFIGDSISDIQSAIEAGCLPIKYGSTNI 208
Query: 245 ----IDVKTFSDVQNRI 257
+ K F D++N I
Sbjct: 209 IKDILSFKNFYDIRNFI 225
>pdb|4FFD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or48
Length = 234
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 163 VAVVSNFDT-RLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVH 221
V ++++ DT + L L + DLFD++ S E G KP PRIF+ AL + V+ V+
Sbjct: 118 VGMITDSDTEQAMAFLDALGIKDLFDSITTSEEAGFFKPHPRIFELALKKAGVKGEEAVY 177
Query: 222 IGDDEKADKQGANSLGIDCWL 242
+GD+ D G+ +LG+ L
Sbjct: 178 VGDNPVKDCGGSKNLGMTSIL 198
>pdb|1X42|A Chain A, Crystal Structure Of A Haloacid Dehalogenase Family
Protein (Ph0459) From Pyrococcus Horikoshii Ot3
Length = 232
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 163 VAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVH 221
V +++ DT L L L + DLFD++ S E G KP PRIF+ AL + V+ V+
Sbjct: 118 VGXITDSDTEYLXAHLDALGIKDLFDSITTSEEAGFFKPHPRIFELALKKAGVKGEEAVY 177
Query: 222 IGDDEKADKQGANSLGIDCWL 242
+GD+ D G+ +LG L
Sbjct: 178 VGDNPVKDCGGSKNLGXTSIL 198
>pdb|3U26|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or48
Length = 234
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 163 VAVVSNFDT-RLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVH 221
V +++ DT + L L + DLFD++ S E G KP PRIF+ AL + V+ V+
Sbjct: 118 VGXITDSDTEQAXAFLDALGIKDLFDSITTSEEAGFFKPHPRIFELALKKAGVKGEEAVY 177
Query: 222 IGDDEKADKQGANSLGIDCWL 242
+GD+ D G+ +LG L
Sbjct: 178 VGDNPVKDCGGSKNLGXTSIL 198
>pdb|2HOQ|A Chain A, Crystal Structure Of The Probable Haloacid Dehalogenase
(Ph1655) From Pyrococcus Horikoshii Ot3
Length = 241
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 148 GAYQSILLLKDAGVKVAVVS--NFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIF 205
GA + ++ LK+ G ++ +++ N + K+L+ L + D F+ V+IS G +KP P+IF
Sbjct: 98 GARKVLIRLKELGYELGIITDGNPVKQWEKILR-LELDDFFEHVIISDFEGVKKPHPKIF 156
Query: 206 KAALDQMSVEASRTVHIGDDEKADKQGANSLGIDC 240
K AL +V+ + +GD +D GA +G+
Sbjct: 157 KKALKAFNVKPEEALMVGDRLYSDIYGAKRVGMKT 191
>pdb|3IB6|A Chain A, Crystal Structure Of An Uncharacterized Protein From
Listeria Monocytogenes Serotype 4b
pdb|3IB6|B Chain B, Crystal Structure Of An Uncharacterized Protein From
Listeria Monocytogenes Serotype 4b
pdb|3IB6|C Chain C, Crystal Structure Of An Uncharacterized Protein From
Listeria Monocytogenes Serotype 4b
pdb|3IB6|D Chain D, Crystal Structure Of An Uncharacterized Protein From
Listeria Monocytogenes Serotype 4b
Length = 189
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 19/123 (15%)
Query: 144 HLPHGAYQSILLLKDA----------GVKVAVVSNFDTR----LRKLLKDLNVIDLFDAV 189
H P Y ++L K+A G K A++SN T ++++L + +ID FD +
Sbjct: 24 HHPLDTYPEVVLRKNAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDYFDFI 83
Query: 190 VIS-SEVG---CEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDC-WLWG 244
S SE+ EKPD IF L+ + ++ + V +G+ ++D GAN GI WL
Sbjct: 84 YASNSELQPGKMEKPDKTIFDFTLNALQIDKTEAVMVGNTFESDIIGANRAGIHAIWLQN 143
Query: 245 IDV 247
+V
Sbjct: 144 PEV 146
>pdb|2OM6|A Chain A, Hypothetical Protein (probable Phosphoserine Phosph
(ph0253) From Pyrococcus Horikoshii Ot3
pdb|2OM6|B Chain B, Hypothetical Protein (probable Phosphoserine Phosph
(ph0253) From Pyrococcus Horikoshii Ot3
Length = 235
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 147 HGAYQSILLLKDAGVKVAVVSNFD----TRLRKLLKDLNVIDLFDAVVISSEVGCEKPDP 202
G +++ +K+ G+K AV+ N + R LL+ + + D + EV KP
Sbjct: 102 EGTKEALQFVKERGLKTAVIGNVXFWPGSYTRLLLERFGLXEFIDKTFFADEVLSYKPRK 161
Query: 203 RIFKAALDQMSVEASRTVHIGDDEKADKQGANSLG 237
F+ L+ V+ ++HIGD D QGA +G
Sbjct: 162 EXFEKVLNSFEVKPEESLHIGDTYAEDYQGARKVG 196
>pdb|3E58|A Chain A, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Streptococcus Thermophilus
pdb|3E58|B Chain B, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Streptococcus Thermophilus
Length = 214
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 84/210 (40%), Gaps = 22/210 (10%)
Query: 51 DAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDG 110
+A++ D G L + + AS + G+++D P G+
Sbjct: 6 EAIIFDXDGVLFDTEKYYYDRRASFLGQKGISIDHL--------------PPSFFIGGNT 51
Query: 111 RPFWRLVVSEATGCTNDDYFEEVYEYYAKGEAWHLPHGAYQSILLL----KDAGVKVAVV 166
+ W ++ + + +E Y Y + + +L + K G+++ +
Sbjct: 52 KQVWENILRDEYDKWDVSTLQEEYNTYKQNNPLPYKELIFPDVLKVLNEVKSQGLEIGLA 111
Query: 167 SN-FDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDD 225
S+ + + L++ + FD V+ E KP+P I+ AL Q++V+ASR + I D
Sbjct: 112 SSSVKADIFRALEENRLQGFFDIVLSGEEFKESKPNPEIYLTALKQLNVQASRALIIEDS 171
Query: 226 EKADKQGANSLGIDCWLWGIDVKTFSDVQN 255
EK G + D +W I F Q+
Sbjct: 172 EKGIAAG---VAADVEVWAIRDNEFGXDQS 198
>pdb|2GFH|A Chain A, Crystal Structure Of A N-acetylneuraminic Acid Phosphatase
(nanp) From Mus Musculus At 1.90 A Resolution
Length = 260
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 3/133 (2%)
Query: 114 WRLVVSEATG-CTNDDYFEEVYEYYAKGEAWHLPHGA-YQSILLLKDAGVKVAVVSNFDT 171
W + E G N EE Y + H+ +++L V++ +++N D
Sbjct: 88 WEEAIQETKGGADNRKLAEECYFLWKSTRLQHMILADDVKAMLTELRKEVRLLLLTNGDR 147
Query: 172 RL-RKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADK 230
+ R+ ++ FDA+VI E EKP P IF D + V+ V +GD + D
Sbjct: 148 QTQREKIEACACQSYFDAIVIGGEQKEEKPAPSIFYHCCDLLGVQPGDCVMVGDTLETDI 207
Query: 231 QGANSLGIDCWLW 243
QG + G+ +W
Sbjct: 208 QGGLNAGLKATVW 220
>pdb|3VAY|A Chain A, Crystal Structure Of 2-Haloacid Dehalogenase From
Pseudomonas Syringae Pv. Tomato Dc3000
pdb|3VAY|B Chain B, Crystal Structure Of 2-Haloacid Dehalogenase From
Pseudomonas Syringae Pv. Tomato Dc3000
Length = 230
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 4/108 (3%)
Query: 131 EEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVV 190
+E +E + G Q L + + V++N + +R+L + D F +
Sbjct: 91 DESFEVFLHGRHQVQIFPEVQPTLEILAKTFTLGVITNGNADVRRL----GLADYFAFAL 146
Query: 191 ISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGI 238
+ ++G KPDP F AL + V+AS VH+GD D GA G+
Sbjct: 147 CAEDLGIGKPDPAPFLEALRRAKVDASAAVHVGDHPSDDIAGAQQAGM 194
>pdb|2W4M|A Chain A, The Crystal Structure Of Human N-Acetylneuraminic Acid
Phosphatase, Nanp
Length = 270
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 3/133 (2%)
Query: 114 WRLVVSEATG-CTNDDYFEEVYEYYAKGEAWHLPHGA-YQSILLLKDAGVKVAVVSNFDT 171
W + E G N EE Y + H+ +++L V++ +++N D
Sbjct: 98 WEEAIQETKGGAANRKLAEECYFLWKSTRLQHMTLAEDVKAMLTELRKEVRLLLLTNGDR 157
Query: 172 RL-RKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADK 230
+ R+ ++ FDAVV+ E EKP P IF + + V+ V +GD + D
Sbjct: 158 QTQREKIEACACQSYFDAVVVGGEQREEKPAPSIFYYCCNLLGVQPGDCVMVGDTLETDI 217
Query: 231 QGANSLGIDCWLW 243
QG + G+ +W
Sbjct: 218 QGGLNAGLKATVW 230
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 10/95 (10%)
Query: 151 QSILLLKDAGVKVAVVSN--FDTR-----LRKLLKDLNVIDLFDAVVISSEVGCEKPDPR 203
Q+ L+L+ G A+++N D R L +L+ +L + FD ++ S +VG KP+P+
Sbjct: 107 QAALMLRKKGFTTAILTNTWLDDRAERDGLAQLMCELKM--HFDFLIESCQVGMVKPEPQ 164
Query: 204 IFKAALDQMSVEASRTVHIGDDEKADKQGANSLGI 238
I+K LD + S V + DD A+ + A LG+
Sbjct: 165 IYKFLLDTLKASPSEVVFL-DDIGANLKPARDLGM 198
>pdb|3QNM|A Chain A, Haloalkane Dehalogenase Family Member From Bacteroides
Thetaiotaomicron Of Unknown Function
Length = 240
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%)
Query: 186 FDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGI 245
F +++S ++G KP P IF AL E ++ IGD +AD GA+ +G + +
Sbjct: 149 FKKIILSEDLGVLKPRPEIFHFALSATQSELRESLXIGDSWEADITGAHGVGXHQAFYNV 208
Query: 246 DVKTFSDVQ 254
+T Q
Sbjct: 209 TERTVFPFQ 217
>pdb|3KBB|A Chain A, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Thermotoga Maritima
Length = 216
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 93/211 (44%), Gaps = 31/211 (14%)
Query: 51 DAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDG 110
+AV+ D G L E Y +A YG P+ E L G
Sbjct: 2 EAVIFDXDGVLXDTEPLYFEAYRRVAESYG-----------------KPYTEDLHRRIXG 44
Query: 111 RPFWR--LVVSEATGCTN--DDYFEEVYEYYAK--GEAWHLPHGAYQSILLLKDAGVKVA 164
P ++ EA + +++ + V+E + E G +++ +K +K+A
Sbjct: 45 VPEREGLPILXEALEIKDSLENFKKRVHEEKKRVFSELLKENPGVREALEFVKSKRIKLA 104
Query: 165 VVSNFDTRLRKLLKDLNVIDL---FDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVH 221
+ ++ T R+ L+ L +DL FD V +V KPDP I+ L++++V + V
Sbjct: 105 LATS--TPQREALERLRRLDLEKYFDVXVFGDQVKNGKPDPEIYLLVLERLNVVPEKVV- 161
Query: 222 IGDDEKADKQGANSLGIDCWLWGIDVKTFSD 252
+ +D K+ + A S GI+ ++G+ V + +D
Sbjct: 162 VFEDSKSGVEAAKSAGIE-RIYGV-VHSLND 190
>pdb|2NYV|A Chain A, X-Ray Crystal Structure Of A Phosphoglycolate Phosphatase
From Aquifex Aeolicus
Length = 222
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 156 LKDAGVKVAVVSN-FDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSV 214
LK G K+AVVSN + +K+L LN+ FD +V G +KP P L+ +
Sbjct: 95 LKSKGFKLAVVSNKLEELSKKILDILNLSGYFDLIVGGDTFGEKKPSPTPVLKTLEILGE 154
Query: 215 EASRTVHIGD---DEKADKQGANSLGIDCW 241
E + + +GD D +A K+ + W
Sbjct: 155 EPEKALIVGDTDADIEAGKRAGTKTALALW 184
>pdb|2YY6|A Chain A, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
pdb|2YY6|B Chain B, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
Length = 213
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 156 LKDAGVKVAVVSN-FDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSV 214
LK G K+AVVSN + +K+L LN+ FD +V G +KP P L+ +
Sbjct: 93 LKSKGFKLAVVSNKLEELSKKILDILNLSGYFDLIVGGDTFGEKKPSPTPVLKTLEILGE 152
Query: 215 EASRTVHIGD---DEKADKQGANSLGIDCW 241
E + + +GD D +A K+ + W
Sbjct: 153 EPEKALIVGDTDADIEAGKRAGTKTALALW 182
>pdb|2B0C|A Chain A, The Crystal Structure Of The Putative Phosphatase From
Escherichia Coli
Length = 206
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 156 LKDAGVKVAVVSNFDTRLRKLL---KDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQM 212
L++ G +V V+SN RL + + D D + +S ++G KP+ RI++ L
Sbjct: 103 LREQGHRVVVLSN-TNRLHTTFWPEEYPEIRDAADHIYLSQDLGMRKPEARIYQHVLQAE 161
Query: 213 SVEASRTVHIGDDEKADKQGANSLGIDCWL 242
S TV DD + +GAN LGI L
Sbjct: 162 GFSPSDTVFF-DDNADNIEGANQLGITSIL 190
>pdb|3ED5|A Chain A, The Crystal Structure Of Yfnb From Bacillus Subtilis
Subsp. Subtilis Str. 168
Length = 238
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 141 EAWHLPHGAYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKP 200
E L GA+ I L+ V + K L+D + F + +S + G +KP
Sbjct: 100 EGHQLIDGAFDLISNLQQQFDLYIVTNGVSHTQYKRLRDSGLFPFFKDIFVSEDTGFQKP 159
Query: 201 DPRIFKAALDQM-SVEASRTVHIGDDEKADKQGANSLGID-CW 241
F +++ A T+ IGD AD +G G+D CW
Sbjct: 160 XKEYFNYVFERIPQFSAEHTLIIGDSLTADIKGGQLAGLDTCW 202
>pdb|3I76|A Chain A, The Crystal Structure Of The Orthorhombic Form Of The
Putative Had- Hydrolase Yfnb From Bacillus Subtilis
Bound To Magnesium Reveals Interdomain Movement
pdb|3I76|B Chain B, The Crystal Structure Of The Orthorhombic Form Of The
Putative Had- Hydrolase Yfnb From Bacillus Subtilis
Bound To Magnesium Reveals Interdomain Movement
pdb|3I76|C Chain C, The Crystal Structure Of The Orthorhombic Form Of The
Putative Had- Hydrolase Yfnb From Bacillus Subtilis
Bound To Magnesium Reveals Interdomain Movement
Length = 244
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
Query: 141 EAWHLPHGAYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKP 200
E L GA+ I L+ V + K L+D + F + +S + G +KP
Sbjct: 99 EGHQLIDGAFDLISNLQQQFDLYIVTNGVSHTQYKRLRDSGLFPFFKDIFVSEDTGFQKP 158
Query: 201 DPRIFKAALDQM-SVEASRTVHIGDDEKADKQGANSLGID-CWL 242
F +++ A T+ IGD AD +G G+D CW+
Sbjct: 159 MKEYFNYVFERIPQFSAEHTLIIGDSLTADIKGGQLAGLDTCWM 202
>pdb|2X4D|A Chain A, Crystal Structure Of Human Phospholysine Phosphohistidine
Inorganic Pyrophosphate Phosphatase Lhpp
pdb|2X4D|B Chain B, Crystal Structure Of Human Phospholysine Phosphohistidine
Inorganic Pyrophosphate Phosphatase Lhpp
Length = 271
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 199 KPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKT 249
KP P FK+AL + VEA + V IGDD D GA C + + V+T
Sbjct: 190 KPSPEFFKSALQAIGVEAHQAVMIGDDIVGDVGGAQR----CGMRALQVRT 236
>pdb|3UM9|A Chain A, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Bpro0530
pdb|3UM9|B Chain B, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Bpro0530
Length = 230
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 17/101 (16%)
Query: 151 QSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAAL 209
Q++ L+ AG+K A++SN +R+++ + + + FD ++ EV KP ++++ A+
Sbjct: 103 QALQQLRAAGLKTAILSNGSRHSIRQVVGNSGLTNSFDHLISVDEVRLFKPHQKVYELAM 162
Query: 210 DQMSVEASRTVHIGDDE-------KADKQGANSLGID-CWL 242
D T+H+G+ E D GA G CW+
Sbjct: 163 D--------TLHLGESEILFVSCNSWDATGAKYFGYPVCWI 195
>pdb|2NO5|A Chain A, Crystal Structure Analysis Of A Dehalogenase With
Intermediate Complex
pdb|2NO5|B Chain B, Crystal Structure Analysis Of A Dehalogenase With
Intermediate Complex
Length = 240
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 149 AYQSILLLKDAGVKVAVVSN-FDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKA 207
A +++ LK AG VA++SN D L+ LK + + D+ + + ++ KPDPRI++
Sbjct: 110 AAETLEKLKSAGYIVAILSNGNDEMLQAALKASKLDRVLDSCLSADDLKIYKPDPRIYQF 169
Query: 208 ALDQMSVEASRTVHIGDDEKADKQGANSLGID 239
A D++ V + + + D GA G +
Sbjct: 170 ACDRLGVNPNEVCFVSSN-AWDLGGAGKFGFN 200
>pdb|3D6J|A Chain A, Crystal Structure Of Putative Haloacid Dehalogenase-Like
Hydrolase From Bacteroides Fragilis
Length = 225
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 122 TGCTNDDYFEEVYEYYAKGEAWH------LPHGAYQSILLLKDAGVKVAVVSN-FDTRLR 174
TG T+ D E + Y+K + L ++ LK G+++ ++S + R+
Sbjct: 61 TGITDADQLESFRQEYSKEADIYXNANTILFPDTLPTLTHLKKQGIRIGIISTKYRFRIL 120
Query: 175 KLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGD 224
L++ D FD ++ +V KPDP A+D++ ++IGD
Sbjct: 121 SFLRNHXPDDWFDIIIGGEDVTHHKPDPEGLLLAIDRLKACPEEVLYIGD 170
>pdb|2NO4|A Chain A, Crystal Structure Analysis Of A Dehalogenase
pdb|2NO4|B Chain B, Crystal Structure Analysis Of A Dehalogenase
Length = 240
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 149 AYQSILLLKDAGVKVAVVSN-FDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKA 207
A +++ LK AG VA++SN D L+ LK + + D+ + + ++ KPDPRI++
Sbjct: 110 AAETLEKLKSAGYIVAILSNGNDEMLQAALKASKLDRVLDSCLSADDLKIYKPDPRIYQF 169
Query: 208 ALDQMSVEASRTVHIGDDEKADKQGANSLGID 239
A D++ V + + + D GA G +
Sbjct: 170 ACDRLGVNPNEVCFVSSN-AWDLGGAGKFGFN 200
>pdb|3MC1|A Chain A, Crystal Structure Of A Predicted Phosphatase From
Clostridium Acetobutylicum
pdb|3MC1|B Chain B, Crystal Structure Of A Predicted Phosphatase From
Clostridium Acetobutylicum
Length = 226
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 81/180 (45%), Gaps = 17/180 (9%)
Query: 50 YDAVLLDAGGTLLQLAEPVEETYASIARKYGLNV-DSADIKKGFRKAFAAPWPEKLRYEG 108
Y+ VL D GTL AE + ++ K+ + V D + + K F P P K +
Sbjct: 4 YNYVLFDLDGTLTDSAEGITKSVKYSLNKFDIQVEDLSSLNK-----FVGP-PLKTSF-- 55
Query: 109 DGRPFWRLVVSEATGCTNDDYFEEVYEYYAKGEAWHLPHGAYQSILL-LKDAGVKVAVVS 167
++ E T DY+ + ++ AKG + + +++L LKD G + V +
Sbjct: 56 --XEYYNF--DEETATVAIDYYRDYFK--AKGXFENKVYDGIEALLSSLKDYGFHLVVAT 109
Query: 168 NFDTRLRK-LLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDE 226
+ T K +L+ + FDA+V SS G + + A + +++++ + IGD E
Sbjct: 110 SKPTVFSKQILEHFKLAFYFDAIVGSSLDGKLSTKEDVIRYAXESLNIKSDDAIXIGDRE 169
>pdb|4F72|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Asp12ala
Mutant, Complex With Magnesium And Inorganic Phosphate
pdb|4F72|B Chain B, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Asp12ala
Mutant, Complex With Magnesium And Inorganic Phosphate
Length = 229
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 178 KDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLG 237
+ V D F+ +S E+ KP+P IFKA + ++ T I DD + + + A LG
Sbjct: 152 RTFKVEDYFEKTYLSYEMKMAKPEPEIFKAVTEDAGIDPKETFFI-DDSEINCKVAQELG 210
Query: 238 IDCW 241
I +
Sbjct: 211 ISTY 214
>pdb|4DFD|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Magnesium
Complex
pdb|4DFD|B Chain B, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Magnesium
Complex
pdb|4DCC|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 From
Bacteroides Thetaiotaomicron (Target Efi-501088)
pdb|4F71|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Wild-Type
Protein, Complex With Magnesium And Inorganic Phosphate
pdb|4F71|B Chain B, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Wild-Type
Protein, Complex With Magnesium And Inorganic Phosphate
Length = 229
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 178 KDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLG 237
+ V D F+ +S E+ KP+P IFKA + ++ T I DD + + + A LG
Sbjct: 152 RTFKVEDYFEKTYLSYEMKMAKPEPEIFKAVTEDAGIDPKETFFI-DDSEINCKVAQELG 210
Query: 238 IDCW 241
I +
Sbjct: 211 ISTY 214
>pdb|1LVH|A Chain A, The Structure Of Phosphorylated Beta-phosphoglucomutase
From Lactoccocus Lactis To 2.3 Angstrom Resolution
pdb|1LVH|B Chain B, The Structure Of Phosphorylated Beta-phosphoglucomutase
From Lactoccocus Lactis To 2.3 Angstrom Resolution
Length = 221
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 146 PHGAYQSIL-LLKD---AGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPD 201
P Y IL LLKD +K+A+ S LL+ +N+ FDA+ +EV KP
Sbjct: 89 PADVYPGILQLLKDLRSNKIKIALASA-SKNGPFLLERMNLTGYFDAIADPAEVAASKPA 147
Query: 202 PRIFKAALDQMSVEASRTVHIGDDE 226
P IF AA + V S ++ + D +
Sbjct: 148 PDIFIAAAHAVGVAPSESIGLEDSQ 172
>pdb|3FM9|A Chain A, Analysis Of The Structural Determinants Underlying
Discrimination Between Substrate And Solvent In Beta-
Phosphoglucomutase Catalysis
Length = 221
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 146 PHGAYQSIL-LLKD---AGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPD 201
P Y IL LLKD +K+A+ S LL+ +N+ FDA+ +EV KP
Sbjct: 89 PADVYPGILQLLKDLRSNKIKIALASA-SKNGPFLLERMNLTGYFDAIADPAEVAASKPA 147
Query: 202 PRIFKAALDQMSVEASRTVHIGDDE 226
P IF AA + V S ++ + D +
Sbjct: 148 PDIFIAAAHAVGVAPSESIGLEDSQ 172
>pdb|1O03|A Chain A, Structure Of Pentavalent Phosphorous Intermediate Of An
Enzyme Catalyzed Phosphoryl Transfer Reaction Observed
On Cocrystallization With Glucose 6-Phosphate
pdb|1O08|A Chain A, Structure Of Pentavalent Phosphorous Intermediate Of An
Enzyme Catalyzed Phosphoryl Transfer Reaction Observed
On Cocrystallization With Glucose 1-Phosphate
pdb|1Z4N|A Chain A, Structure Of Beta-phosphoglucomutase With Inhibitor Bound
Alpha-galactose 1-phosphate Cocrystallized With Fluoride
pdb|1Z4N|B Chain B, Structure Of Beta-phosphoglucomutase With Inhibitor Bound
Alpha-galactose 1-phosphate Cocrystallized With Fluoride
pdb|1Z4O|A Chain A, Structure Of Beta-Phosphoglucomutase With Inhibitor Bound
Alpha-Galactose 1-Phosphate
pdb|1Z4O|B Chain B, Structure Of Beta-Phosphoglucomutase With Inhibitor Bound
Alpha-Galactose 1-Phosphate
pdb|1ZOL|A Chain A, Native Beta-Pgm
pdb|2WF5|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phospahte And Trifluoromagnesate
pdb|2WHE|A Chain A, Structure Of Native Beta-Phosphoglucomutase In An Open
Conformation Without Bound Ligands.
pdb|2WF7|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphonate And Aluminium Tetrafluoride
pdb|2WF6|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phospahte And Aluminium Tetrafluoride
pdb|2WF8|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphate, Glucose-1-Phosphate And Beryllium
Trifluoride
pdb|2WF9|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphate, And Beryllium Trifluoride, Crystal
Form 2
pdb|2WFA|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Beryllium Trifluoride, In An Open Conformation
Length = 221
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 146 PHGAYQSIL-LLKD---AGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPD 201
P Y IL LLKD +K+A+ S LL+ +N+ FDA+ +EV KP
Sbjct: 89 PADVYPGILQLLKDLRSNKIKIALASA-SKNGPFLLERMNLTGYFDAIADPAEVAASKPA 147
Query: 202 PRIFKAALDQMSVEASRTVHIGDDE 226
P IF AA + V S ++ + D +
Sbjct: 148 PDIFIAAAHAVGVAPSESIGLEDSQ 172
>pdb|1K1E|A Chain A, Structure Of The Cobalt-Bound Form Of The
Deoxy-D-Mannose-Octulosonate 8-Phosphate Phosphatase
(Yrbi) From Haemophilus Influenzae (Hi1679)
pdb|1K1E|B Chain B, Structure Of The Cobalt-Bound Form Of The
Deoxy-D-Mannose-Octulosonate 8-Phosphate Phosphatase
(Yrbi) From Haemophilus Influenzae (Hi1679)
pdb|1K1E|C Chain C, Structure Of The Cobalt-Bound Form Of The
Deoxy-D-Mannose-Octulosonate 8-Phosphate Phosphatase
(Yrbi) From Haemophilus Influenzae (Hi1679)
pdb|1K1E|D Chain D, Structure Of The Cobalt-Bound Form Of The
Deoxy-D-Mannose-Octulosonate 8-Phosphate Phosphatase
(Yrbi) From Haemophilus Influenzae (Hi1679)
pdb|1K1E|E Chain E, Structure Of The Cobalt-Bound Form Of The
Deoxy-D-Mannose-Octulosonate 8-Phosphate Phosphatase
(Yrbi) From Haemophilus Influenzae (Hi1679)
pdb|1K1E|F Chain F, Structure Of The Cobalt-Bound Form Of The
Deoxy-D-Mannose-Octulosonate 8-Phosphate Phosphatase
(Yrbi) From Haemophilus Influenzae (Hi1679)
pdb|1K1E|G Chain G, Structure Of The Cobalt-Bound Form Of The
Deoxy-D-Mannose-Octulosonate 8-Phosphate Phosphatase
(Yrbi) From Haemophilus Influenzae (Hi1679)
pdb|1K1E|H Chain H, Structure Of The Cobalt-Bound Form Of The
Deoxy-D-Mannose-Octulosonate 8-Phosphate Phosphatase
(Yrbi) From Haemophilus Influenzae (Hi1679)
pdb|1K1E|I Chain I, Structure Of The Cobalt-Bound Form Of The
Deoxy-D-Mannose-Octulosonate 8-Phosphate Phosphatase
(Yrbi) From Haemophilus Influenzae (Hi1679)
pdb|1K1E|J Chain J, Structure Of The Cobalt-Bound Form Of The
Deoxy-D-Mannose-Octulosonate 8-Phosphate Phosphatase
(Yrbi) From Haemophilus Influenzae (Hi1679)
pdb|1K1E|K Chain K, Structure Of The Cobalt-Bound Form Of The
Deoxy-D-Mannose-Octulosonate 8-Phosphate Phosphatase
(Yrbi) From Haemophilus Influenzae (Hi1679)
pdb|1K1E|L Chain L, Structure Of The Cobalt-Bound Form Of The
Deoxy-D-Mannose-Octulosonate 8-Phosphate Phosphatase
(Yrbi) From Haemophilus Influenzae (Hi1679)
Length = 180
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 19/115 (16%)
Query: 115 RLVVSEATGCTNDDYFEEVYEYYAKGEA---WHLPHGAYQSILLLKDAGVKVAVVSNFDT 171
+ V+++ G D Y A GEA +H+ G I +L DA ++VAV+S D+
Sbjct: 9 KFVITDVDGVLTDGQLH----YDANGEAIKSFHVRDGL--GIKMLMDADIQVAVLSGRDS 62
Query: 172 R-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDD 225
LR+ + DL I LF + E C + Q V A +T +IGDD
Sbjct: 63 PILRRRIADLG-IKLFFLGKLEKETACFD--------LMKQAGVTAEQTAYIGDD 108
>pdb|2HI0|A Chain A, Crystal Structure Of Putative Phosphoglycolate Phosphatase
(Yp_619066.1) From Lactobacillus Delbrueckii Subsp.
Bulgaricus Atcc Baa-365 At 1.51 A Resolution
pdb|2HI0|B Chain B, Crystal Structure Of Putative Phosphoglycolate Phosphatase
(Yp_619066.1) From Lactobacillus Delbrueckii Subsp.
Bulgaricus Atcc Baa-365 At 1.51 A Resolution
Length = 240
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 77/203 (37%), Gaps = 22/203 (10%)
Query: 50 YDAVLLDAGGTLLQ----LAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLR 105
Y A + D GT+L L + + ++ V+ DIK F L
Sbjct: 4 YKAAIFDXDGTILDTSADLTSALNYAFEQTGHRHDFTVE--DIKNFFGSGVVVAVTRALA 61
Query: 106 YEGDGRPFWRLV--------VSEATGCTNDDYFEEVYE-YYAKGEAWHLPHGAYQSIL-- 154
YE G LV + EA T + EV++ YYA + + G + IL
Sbjct: 62 YEA-GSSRESLVAFGTKDEQIPEAVTQTEVNRVLEVFKPYYA--DHCQIKTGPFPGILDL 118
Query: 155 --LLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQM 212
L+ GVK+AVVSN ++L + FD + KP P + +
Sbjct: 119 XKNLRQKGVKLAVVSNKPNEAVQVLVEELFPGSFDFALGEKSGIRRKPAPDXTSECVKVL 178
Query: 213 SVEASRTVHIGDDEKADKQGANS 235
V + V+IGD E + NS
Sbjct: 179 GVPRDKCVYIGDSEIDIQTARNS 201
>pdb|3NAS|A Chain A, The Crystal Structure Of Beta-Phosphoglucomutase From
Bacillus Subtilis
pdb|3NAS|B Chain B, The Crystal Structure Of Beta-Phosphoglucomutase From
Bacillus Subtilis
Length = 233
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 156 LKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVE 215
LK+ +K+ + S+ K+L+ L +ID F A+V + + KPDP IF A + V
Sbjct: 104 LKNENIKIGLASS-SRNAPKILRRLAIIDDFHAIVDPTTLAKGKPDPDIFLTAAAXLDVS 162
Query: 216 ASRTVHIGDDE 226
+ I D E
Sbjct: 163 PADCAAIEDAE 173
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 151 QSILLLKDAGVKVAVVSNF-----DTR--LRKLLKDLNVIDLFDAVVISSEVGCEKPDPR 203
Q+ + LK G +V+N D R L +++ +L+ FD ++ S +VG KP+P+
Sbjct: 107 QAAIALKKKGFTTCIVTNNWLDDGDKRDSLAQMMCELS--QHFDFLIESCQVGMIKPEPQ 164
Query: 204 IFKAALDQMSVEASRTVHIGDDEKADKQGANSLGI 238
I+ LD + + + V + DD ++ + A +G+
Sbjct: 165 IYNFLLDTLKAKPNEVVFL-DDFGSNLKPARDMGM 198
>pdb|3SMV|A Chain A, X-Ray Crystal Structure Of L-Azetidine-2-Carboxylate
Hydrolase
Length = 240
Score = 34.7 bits (78), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 162 KVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMS---VEASR 218
K+ ++SN D KL ++ FD ++ + +VG KP+P F +D ++ +E
Sbjct: 116 KLVILSNIDRNEFKLSNAKLGVE-FDHIITAQDVGSYKPNPNNFTYMIDALAKAGIEKKD 174
Query: 219 TVHIGDDEKADKQGANSLG-IDCWLW 243
+H + D AN G + W++
Sbjct: 175 ILHTAESLYHDHIPANDAGLVSAWIY 200
>pdb|2C4N|A Chain A, Nagd From E.Coli K-12 Strain
Length = 250
Score = 34.3 bits (77), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 199 KPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFSDVQN 255
KP P I +AAL++M + TV +GD+ + D G++ L V + D+ +
Sbjct: 176 KPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSSLDDIDS 232
>pdb|2GO7|A Chain A, Crystal Structure Of A Hydrolase From Haloacid
Dehalogenase-Like Family (Sp_2064) From Streptococcus
Pneumoniae Tigr4 At 2.10 A Resolution
pdb|2GO7|B Chain B, Crystal Structure Of A Hydrolase From Haloacid
Dehalogenase-Like Family (Sp_2064) From Streptococcus
Pneumoniae Tigr4 At 2.10 A Resolution
pdb|2GO7|C Chain C, Crystal Structure Of A Hydrolase From Haloacid
Dehalogenase-Like Family (Sp_2064) From Streptococcus
Pneumoniae Tigr4 At 2.10 A Resolution
pdb|2GO7|D Chain D, Crystal Structure Of A Hydrolase From Haloacid
Dehalogenase-Like Family (Sp_2064) From Streptococcus
Pneumoniae Tigr4 At 2.10 A Resolution
Length = 207
Score = 33.9 bits (76), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Query: 145 LPHGAYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRI 204
L GA + + ++G++ + ++ +LKDL V F ++ S KP P
Sbjct: 86 LXPGAREVLAWADESGIQQFIYTHKGNNAFTILKDLGVESYFTEILTSQSGFVRKPSPEA 145
Query: 205 FKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDC 240
LD+ + + T +IG D D + A + GI
Sbjct: 146 ATYLLDKYQLNSDNTYYIG-DRTLDVEFAQNSGIQS 180
>pdb|1J8D|A Chain A, Structure Of The Metal-Free Form Of The
Deoxy-D-Mannose-Octulosonate 8-Phosphate Phosphatase
(Yrbi) From Haemophilus Influenzae (Hi1679)
pdb|1J8D|B Chain B, Structure Of The Metal-Free Form Of The
Deoxy-D-Mannose-Octulosonate 8-Phosphate Phosphatase
(Yrbi) From Haemophilus Influenzae (Hi1679)
pdb|1J8D|C Chain C, Structure Of The Metal-Free Form Of The
Deoxy-D-Mannose-Octulosonate 8-Phosphate Phosphatase
(Yrbi) From Haemophilus Influenzae (Hi1679)
pdb|1J8D|D Chain D, Structure Of The Metal-Free Form Of The
Deoxy-D-Mannose-Octulosonate 8-Phosphate Phosphatase
(Yrbi) From Haemophilus Influenzae (Hi1679)
Length = 180
Score = 33.9 bits (76), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 51/115 (44%), Gaps = 19/115 (16%)
Query: 115 RLVVSEATGCTNDDYFEEVYEYYAKGEA---WHLPHGAYQSILLLKDAGVKVAVVSNFDT 171
+ V+++ G D Y A GEA +H+ G I L DA ++VAV+S D+
Sbjct: 9 KFVITDVDGVLTDGQLH----YDANGEAIKSFHVRDGL--GIKXLXDADIQVAVLSGRDS 62
Query: 172 R-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDD 225
LR+ + DL I LF + E C Q V A +T +IGDD
Sbjct: 63 PILRRRIADLG-IKLFFLGKLEKETACFDLXK--------QAGVTAEQTAYIGDD 108
>pdb|1ZRM|A Chain A, Crystal Structure Of The Reaction Intermediate Of
L-2-Haloacid Dehalogenase With 2-Chloro-N-Butyrate
pdb|1ZRN|A Chain A, Intermediate Structure Of L-2-haloacid Dehalogenase With
Monochloroacetate
Length = 232
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 152 SILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALD 210
S+ LK G+K+A++SN + + ++ + D FD ++ V KPD R+++ A
Sbjct: 103 SLRELKRRGLKLAILSNGSPQSIDAVVSHAGLRDGFDHLLSVDPVQVYKPDNRVYELAEQ 162
Query: 211 QMSVEASRTVHIGDDEKADKQGANSLGI-DCWL 242
+ ++ S + + + D GA G CW+
Sbjct: 163 ALGLDRSAILFVASN-AWDATGARYFGFPTCWI 194
>pdb|1QH9|A Chain A, Enzyme-Product Complex Of L-2-Haloacid Dehalogenase
pdb|1JUD|A Chain A, L-2-haloacid Dehalogenase
Length = 232
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 152 SILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALD 210
S+ LK G+K+A++SN + + ++ + D FD ++ V KPD R+++ A
Sbjct: 103 SLRELKRRGLKLAILSNGSPQSIDAVVSHAGLRDGFDHLLSVDPVQVYKPDNRVYELAEQ 162
Query: 211 QMSVEASRTVHIGDDEKADKQGANSLGI-DCWL 242
+ ++ S + + + D GA G CW+
Sbjct: 163 ALGLDRSAILFVSSN-AWDATGARYFGFPTCWI 194
>pdb|2HDO|A Chain A, Crystal Structure Of Putative Phosphoglycolate Phosphatase
(Np_784602.1) From Lactobacillus Plantarum At 1.50 A
Resolution
Length = 209
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 188 AVVISSE-VGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWL--WG 244
AV IS++ KPDP AL++++V + IG D +D+Q A + +D L WG
Sbjct: 126 AVTISADDTPKRKPDPLPLLTALEKVNVAPQNALFIG-DSVSDEQTAQAANVDFGLAVWG 184
Query: 245 ID 246
D
Sbjct: 185 XD 186
>pdb|4EEK|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
Deinococcus Radiodurans R1 (Target Efi-501256) With
Bound Phosphate And Sodium
pdb|4EEL|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
Deinococcus Radiodurans R1 (Target Efi-501256) With
Bound Citrate And Sodium
pdb|4EEN|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
Deinococcus Radiodurans R1 (Target Efi-501256) With
Bound Magnesium
Length = 259
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 76/179 (42%), Gaps = 17/179 (9%)
Query: 50 YDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGD 109
+DAVL D G L++ + + + S+ + GL++D +I F R++G
Sbjct: 28 FDAVLFDLDGVLVESEGIIAQVWQSVLAERGLHLDLTEIAMYFTGQ---------RFDG- 77
Query: 110 GRPFWRLVVSEATGCTNDDYFEEV-YEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSN 168
+ + D+ + + + A GA +++ L+ AGV A+ SN
Sbjct: 78 ---VLAYLAQQHDFVPPPDFLDVLETRFNAAMTGVTAIEGAAETLRALRAAGVPFAIGSN 134
Query: 169 FD-TRLRKLLKDLNVIDLF-DAVVISSEVGCE-KPDPRIFKAALDQMSVEASRTVHIGD 224
+ RL L+ + +L + + S VG KP P ++ A Q+ + R V I D
Sbjct: 135 SERGRLHLKLRVAGLTELAGEHIYDPSWVGGRGKPHPDLYTFAAQQLGILPERCVVIED 193
>pdb|1YV9|A Chain A, Crystal Structure Of A Had-Like Phosphatase From
Enterococcus Faecalis V583
pdb|1YV9|B Chain B, Crystal Structure Of A Had-Like Phosphatase From
Enterococcus Faecalis V583
Length = 264
Score = 30.8 bits (68), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 181 NVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDC 240
+V+ + + V KP I + A+ + VE + + +GD+ + D Q GID
Sbjct: 165 SVVTFVETATQTKPVYIGKPKAIIMERAIAHLGVEKEQVIMVGDNYETDIQSGIQNGIDS 224
Query: 241 WL 242
L
Sbjct: 225 LL 226
>pdb|3R9K|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asp Mutant Complexed With
Sulfate, A Closed Cap Conformation
Length = 243
Score = 30.8 bits (68), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 77/191 (40%), Gaps = 29/191 (15%)
Query: 43 GKSVKKAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPE 102
G ++K AVL D G L E + + + +GL++ +
Sbjct: 17 GSHMRKKLKAVLFDMDGVLFNSMPYHSEAWHQVMKTHGLDLSREE--------------- 61
Query: 103 KLRYEGDGRP--------FWRLVVSEATGCTNDD-YFEEVYEYYAKGEAWHLPHGAYQSI 153
Y DGR F R + EAT + Y E+ + + EA +P GA++ +
Sbjct: 62 --AYMHDGRTGASTINIVFQRELGKEATQEEIESIYHEKSILFNSYPEAERMP-GAWELL 118
Query: 154 LLLKDAGVKVAVVSNFD--TRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQ 211
+K G+ VV+ + L +L + + + +V + +V KP+P + AL +
Sbjct: 119 QKVKSEGLTPMVVTGSGQLSLLERLEHNFPGMFHKELMVTAFDVKYGKPNPEPYLMALKK 178
Query: 212 MSVEASRTVHI 222
++A V I
Sbjct: 179 GGLKADEAVVI 189
>pdb|3MKH|A Chain A, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|B Chain B, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|C Chain C, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|D Chain D, Podospora Anserina Nitroalkane Oxidase
Length = 438
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 19/114 (16%)
Query: 21 KPLRFNISNRLRCSSMPLHSGVGKS-VKKAYDAVLLDAGGTLLQLAEPVEETY------A 73
PLRF + ++ + +G+ K + A+ GGTL++ A VEE Y A
Sbjct: 40 SPLRFQSTQPTYAAA--VSAGILKGQISPAHGGT----GGTLIESAILVEECYSVEPSAA 93
Query: 74 SIARKYGLNVDSADIKKGFRKA-FAAPWPEKLRYEGDGRPFWRLVVSEATGCTN 126
GL + ++ G + A F AP+ G+G P LV SE G N
Sbjct: 94 LTIFATGLGLTPINLAAGPQHAEFLAPF-----LSGEGSPLASLVFSEPGGVAN 142
>pdb|3S6J|A Chain A, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|B Chain B, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|C Chain C, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|D Chain D, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|E Chain E, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|F Chain F, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
Length = 233
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 61/152 (40%), Gaps = 30/152 (19%)
Query: 98 APWPEKLRYEGDGRPFWRL-------------VVSEATGCT-NDDYFEEVYEYYAKG--- 140
A W E L E WR+ +S TG + D+ E + E +A+
Sbjct: 26 AAWKEALDAENIPLAXWRIHRKIGXSGGLXLKSLSRETGXSITDEQAERLSEKHAQAYER 85
Query: 141 ---EAWHLPHGAYQSILLLKDAGVK--VAVVSNFDT---RLRKLLKDLNVIDLFDAVVIS 192
+ LP GA + + L +K +A DT L+ L D+N I+ +V
Sbjct: 86 LQHQIIALP-GAVELLETLDKENLKWCIATSGGIDTATINLKALKLDINKIN----IVTR 140
Query: 193 SEVGCEKPDPRIFKAALDQMSVEASRTVHIGD 224
+V KPDP +F AA ++ + IGD
Sbjct: 141 DDVSYGKPDPDLFLAAAKKIGAPIDECLVIGD 172
>pdb|4G9B|A Chain A, Crystal Structure Of Beta-Phosphoglucomutase Homolog From
Escherichia Coli, Target Efi-501172, With Bound Mg, Open
Lid
Length = 243
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 176 LLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKA----DKQ 231
+L L + + F +S++ KPDP IF AA + V + I D + +
Sbjct: 126 ILAALELREFFTFCADASQLKNSKPDPEIFLAACAGLGVPPQACIGIEDAQAGIDAINAS 185
Query: 232 GANSLGIDCWLWG 244
G S+GI L G
Sbjct: 186 GMRSVGIGAGLTG 198
>pdb|3HLT|A Chain A, The Crystal Structure Of Human Haloacid Dehalogenase-Like
Hydrolase Domain Containing 2 (Hdhd2)
pdb|3HLT|C Chain C, The Crystal Structure Of Human Haloacid Dehalogenase-Like
Hydrolase Domain Containing 2 (Hdhd2)
Length = 266
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 199 KPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKT 249
KP+ F AL E V IGDD + D GA +G + GI VKT
Sbjct: 179 KPEKTFFLEALRGTGCEPEEAVMIGDDCRDDVGGAQDVG----MLGILVKT 225
>pdb|3QU4|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|C Chain C, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|D Chain D, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|E Chain E, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|F Chain F, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|G Chain G, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|H Chain H, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
Length = 243
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 77/191 (40%), Gaps = 29/191 (15%)
Query: 43 GKSVKKAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPE 102
G ++K AVL D G L E + + + +GL++ +
Sbjct: 17 GSHMRKKLKAVLFDMAGVLFNSMPYHSEAWHQVMKTHGLDLSREE--------------- 61
Query: 103 KLRYEGDGRP--------FWRLVVSEATGCTNDD-YFEEVYEYYAKGEAWHLPHGAYQSI 153
Y +GR F R + EAT + Y E+ + + EA +P GA++ +
Sbjct: 62 --AYMHEGRTGASTINIVFQRELGKEATQEEIESIYHEKSILFNSYPEAERMP-GAWELL 118
Query: 154 LLLKDAGVKVAVVSNFD--TRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQ 211
+K G+ VV+ + L +L + + + +V + +V KP+P + AL +
Sbjct: 119 QKVKSEGLTPMVVTGSGQLSLLERLEHNFPGMFHKELMVTAFDVKYGKPNPEPYLMALKK 178
Query: 212 MSVEASRTVHI 222
++A V I
Sbjct: 179 GGLKADEAVVI 189
>pdb|3QUT|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant, An Open Cap
Conformation
pdb|3QU7|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With Calcium
And Phosphate
pdb|3QU7|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With Calcium
And Phosphate
pdb|3QU9|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With
Magnesium And Tartrate
Length = 243
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 77/191 (40%), Gaps = 29/191 (15%)
Query: 43 GKSVKKAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPE 102
G ++K AVL D G L E + + + +GL++ +
Sbjct: 17 GSHMRKKLKAVLFDMNGVLFNSMPYHSEAWHQVMKTHGLDLSREE--------------- 61
Query: 103 KLRYEGDGRP--------FWRLVVSEATGCTNDD-YFEEVYEYYAKGEAWHLPHGAYQSI 153
Y +GR F R + EAT + Y E+ + + EA +P GA++ +
Sbjct: 62 --AYMHEGRTGASTINIVFQRELGKEATQEEIESIYHEKSILFNSYPEAERMP-GAWELL 118
Query: 154 LLLKDAGVKVAVVSNFD--TRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQ 211
+K G+ VV+ + L +L + + + +V + +V KP+P + AL +
Sbjct: 119 QKVKSEGLTPMVVTGSGQLSLLERLEHNFPGMFHKELMVTAFDVKYGKPNPEPYLMALKK 178
Query: 212 MSVEASRTVHI 222
++A V I
Sbjct: 179 GGLKADEAVVI 189
>pdb|1ZBP|A Chain A, X-Ray Crystal Structure Of Protein Vpa1032 From Vibrio
Parahaemolyticus. Northeast Structural Genomics
Consortium Target Vpr44
Length = 273
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 228 ADKQGANSLGIDCWLWGIDVKTFSDVQNRILITE 261
ADK+ LG+ CWL G SD+QN +I E
Sbjct: 230 ADKEVYLGLGLKCWLVGEXALPISDLQNLQVIKE 263
>pdb|3SD7|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of Putative
Phosphatase From Clostridium Difficile
Length = 240
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 82/205 (40%), Gaps = 20/205 (9%)
Query: 45 SVKKAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKL 104
++KK Y+ VL D GTL E + ++ +G+ D ++ + + E
Sbjct: 24 AMKKNYEIVLFDLDGTLTDPKEGITKSIQYSLNSFGIKEDLENLDQFIGPPLHDTFKEYY 83
Query: 105 RYEGDGRPFWRLVVSEATGCTNDDYFEEVYEYYA-KGEAWHLPHGAYQSIL--LLKDAGV 161
++E D + EA E+ EY+A KG + + + IL L K+ +
Sbjct: 84 KFE-DKKA------KEAV--------EKYREYFADKGIFENKIYENMKEILEMLYKNGKI 128
Query: 162 KVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVH 221
+ S +L+ ++ F + S+ G + + LD +V+ V
Sbjct: 129 LLVATSKPTVFAETILRYFDIDRYFKYIAGSNLDGTRVNKNEVIQYVLDLCNVKDKDKVI 188
Query: 222 IGDDEKADKQGANSLGIDCW--LWG 244
+ D K D GA +GID L+G
Sbjct: 189 MVGDRKYDIIGAKKIGIDSIGVLYG 213
>pdb|2CFS|A Chain A, Crystal Structure Of Human Pyridoxal 5'-Phosphate
Phosphatase
pdb|2CFT|A Chain A, Crystal Structure Of Human Pyridoxal 5'-Phosphate
Phosphatase With Its Substrate
Length = 298
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 199 KPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFSDVQ 254
KP P +F+ + S++ +RT+ +GD + D + G+ L V + Q
Sbjct: 215 KPSPYMFECITENFSIDPARTLMVGDRLETDILFGHRCGMTTVLTLTGVSRLEEAQ 270
>pdb|3QUQ|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, An Open Cap Conformation
pdb|3QU2|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|C Chain C, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|D Chain D, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QX7|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Phosphate, A Closed Cap
Conformation
pdb|3QXG|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Calcium, A Closed Cap
Conformation
pdb|3QXG|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Calcium, A Closed Cap
Conformation
Length = 243
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 77/191 (40%), Gaps = 29/191 (15%)
Query: 43 GKSVKKAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPE 102
G ++K AVL D G L E + + + +GL++ +
Sbjct: 17 GSHMRKKLKAVLFDMDGVLFNSMPYHSEAWHQVMKTHGLDLSREE--------------- 61
Query: 103 KLRYEGDGRP--------FWRLVVSEATGCTNDD-YFEEVYEYYAKGEAWHLPHGAYQSI 153
Y +GR F R + EAT + Y E+ + + EA +P GA++ +
Sbjct: 62 --AYMHEGRTGASTINIVFQRELGKEATQEEIESIYHEKSILFNSYPEAERMP-GAWELL 118
Query: 154 LLLKDAGVKVAVVSNFD--TRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQ 211
+K G+ VV+ + L +L + + + +V + +V KP+P + AL +
Sbjct: 119 QKVKSEGLTPMVVTGSGQLSLLERLEHNFPGMFHKELMVTAFDVKYGKPNPEPYLMALKK 178
Query: 212 MSVEASRTVHI 222
++A V I
Sbjct: 179 GGLKADEAVVI 189
>pdb|3QYP|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Calcium
And Phosphate
pdb|3QYP|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Calcium
And Phosphate
pdb|3QUC|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Sulfate
Length = 243
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 77/191 (40%), Gaps = 29/191 (15%)
Query: 43 GKSVKKAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPE 102
G ++K AVL D G L E + + + +GL++ +
Sbjct: 17 GSHMRKKLKAVLFDMDGVLFNSMPYHSEAWHQVMKTHGLDLSREE--------------- 61
Query: 103 KLRYEGDGRP--------FWRLVVSEATGCTNDD-YFEEVYEYYAKGEAWHLPHGAYQSI 153
Y +GR F R + EAT + Y E+ + + EA +P GA++ +
Sbjct: 62 --AYMHNGRTGASTINIVFQRELGKEATQEEIESIYHEKSILFNSYPEAERMP-GAWELL 118
Query: 154 LLLKDAGVKVAVVSNFD--TRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQ 211
+K G+ VV+ + L +L + + + +V + +V KP+P + AL +
Sbjct: 119 QKVKSEGLTPMVVTGSGQLSLLERLEHNFPGMFHKELMVTAFDVKYGKPNPEPYLMALKK 178
Query: 212 MSVEASRTVHI 222
++A V I
Sbjct: 179 GGLKADEAVVI 189
>pdb|1TE2|A Chain A, Putative Phosphatase Ynic From Escherichia Coli K12
pdb|1TE2|B Chain B, Putative Phosphatase Ynic From Escherichia Coli K12
Length = 226
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 141 EAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEK 199
E L G +++ L K+ G+ V + S L K+L ++ D FDA+ + ++ K
Sbjct: 91 ETRPLLPGVREAVALCKEQGLLVGLASASPLHXLEKVLTXFDLRDSFDALASAEKLPYSK 150
Query: 200 PDPRIFKAALDQMSVEASRTVHIGD 224
P P+++ ++ V+ V + D
Sbjct: 151 PHPQVYLDCAAKLGVDPLTCVALED 175
>pdb|2FI1|A Chain A, The Crystal Structure Of A Hydrolase From Streptococcus
Pneumoniae Tigr4
Length = 190
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 40/199 (20%), Positives = 73/199 (36%), Gaps = 31/199 (15%)
Query: 50 YDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGD 109
Y + D GGTLL E + YG+ D + + + +
Sbjct: 6 YHDYIWDLGGTLLDNYETSTAAFVETLALYGITQDHDSVYQALKVS-------------- 51
Query: 110 GRPFWRLVVSEATGCTNDDYFEEVYEYYAKGEAWHLPH-----GAYQSILLLKDAGVKVA 164
PF + T N E E Y + EA L H G + + + G +
Sbjct: 52 -TPF-----AIETFAPN---LENFLEKYKENEARELEHPILFEGVSDLLEDISNQGGRHF 102
Query: 165 VVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGD 224
+VS+ + ++ ++L+ ++ F VV SS KP+P ++ + + +
Sbjct: 103 LVSHRNDQVLEILEKTSIAAYFTEVVTSSSGFKRKPNPESMLYLREKYQISSGLVI---G 159
Query: 225 DEKADKQGANSLGIDCWLW 243
D D + + G+D L+
Sbjct: 160 DRPIDIEAGQAAGLDTHLF 178
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 50/138 (36%), Gaps = 45/138 (32%)
Query: 71 TYASIARKYG---LNVDSADIKKG---------------FRKAFAAPWPEKLRYEGDGRP 112
TY + + YG L V+ +IKKG F K A + +G+
Sbjct: 289 TYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKXLAG-----VEEPTEGKI 343
Query: 113 FWRLVVSEATGCTNDDYFEEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR 172
W L V+ DY VYE +K +A L Y++
Sbjct: 344 EWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKT-------------------- 383
Query: 173 LRKLLKDLNVIDLFDAVV 190
+LLK L +IDL+D V
Sbjct: 384 --ELLKPLGIIDLYDREV 399
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 82 NVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTNDDYFEEVYEYY 137
+ + ++KKG+RKA P+K GD F +SEA ND E+Y+ Y
Sbjct: 19 SANEQELKKGYRKAALKYHPDKPT--GDTEKFKE--ISEAFEILNDPQKREIYDQY 70
>pdb|3QUB|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47ala Mutant Complexed With Sulfate
Length = 243
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 76/191 (39%), Gaps = 29/191 (15%)
Query: 43 GKSVKKAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPE 102
G ++K AVL D G L E + + + +GL++ +
Sbjct: 17 GSHMRKKLKAVLFDMDGVLFNSMPYHSEAWHQVMKTHGLDLSREE--------------- 61
Query: 103 KLRYEGDGRP--------FWRLVVSEATGCTNDD-YFEEVYEYYAKGEAWHLPHGAYQSI 153
Y GR F R + EAT + Y E+ + + EA +P GA++ +
Sbjct: 62 --AYMHAGRTGASTINIVFQRELGKEATQEEIESIYHEKSILFNSYPEAERMP-GAWELL 118
Query: 154 LLLKDAGVKVAVVSNFD--TRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQ 211
+K G+ VV+ + L +L + + + +V + +V KP+P + AL +
Sbjct: 119 QKVKSEGLTPMVVTGSGQLSLLERLEHNFPGMFHKELMVTAFDVKYGKPNPEPYLMALKK 178
Query: 212 MSVEASRTVHI 222
++A V I
Sbjct: 179 GGLKADEAVVI 189
>pdb|2HO4|A Chain A, Crystal Structure Of Protein From Mouse Mm.236127
pdb|2HO4|B Chain B, Crystal Structure Of Protein From Mouse Mm.236127
Length = 259
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 199 KPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKT 249
KP+ F AL V IGDD + D GA ++G GI VKT
Sbjct: 179 KPEKTFFLEALRDADCAPEEAVXIGDDCRDDVDGAQNIGX----LGILVKT 225
>pdb|2FPW|A Chain A, Crystal Structure Of The N-Terminal Domain Of E.Coli Hisb-
Phosphoaspartate Intermediate.
pdb|2FPW|B Chain B, Crystal Structure Of The N-Terminal Domain Of E.Coli Hisb-
Phosphoaspartate Intermediate
Length = 176
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 148 GAYQSILLLKDAGVKVAVVSN-------------FDTRLRKLLKDLNVIDL-FDAVVI-- 191
G +L L+ AG K+ +++N FD +++ + FD V+I
Sbjct: 46 GVIPQLLKLQKAGYKLVMITNQDGLGTQSFPQADFDGPHNLMMQIFTSQGVQFDEVLICP 105
Query: 192 ---SSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGID 239
+ E C KP ++ + L + +++ + + IG D D Q A ++GI+
Sbjct: 106 HLPADECDCRKPKVKLVERYLAEQAMDRANSYVIG-DRATDIQLAENMGIN 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,754,612
Number of Sequences: 62578
Number of extensions: 323553
Number of successful extensions: 939
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 881
Number of HSP's gapped (non-prelim): 77
length of query: 261
length of database: 14,973,337
effective HSP length: 97
effective length of query: 164
effective length of database: 8,903,271
effective search space: 1460136444
effective search space used: 1460136444
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)