Query 024886
Match_columns 261
No_of_seqs 133 out of 1281
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 08:11:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024886.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024886hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13288 pyrophosphatase PpaX; 100.0 1E-29 2.3E-34 200.7 19.3 187 48-253 1-191 (214)
2 TIGR02252 DREG-2 REG-2-like, H 100.0 1.2E-29 2.6E-34 198.8 19.5 192 51-242 1-203 (203)
3 PRK13226 phosphoglycolate phos 100.0 2.3E-29 5E-34 200.4 20.1 183 49-246 11-197 (229)
4 PLN02770 haloacid dehalogenase 100.0 4.3E-29 9.3E-34 201.1 20.3 185 47-246 19-210 (248)
5 TIGR01422 phosphonatase phosph 100.0 7.4E-29 1.6E-33 200.7 20.6 193 50-248 2-205 (253)
6 COG0546 Gph Predicted phosphat 100.0 3.7E-29 8.1E-34 197.9 17.8 185 48-247 2-192 (220)
7 TIGR03351 PhnX-like phosphonat 100.0 5.9E-29 1.3E-33 197.3 18.7 189 50-253 1-200 (220)
8 PLN03243 haloacid dehalogenase 100.0 1.2E-28 2.7E-33 198.7 20.5 182 49-244 23-209 (260)
9 TIGR02253 CTE7 HAD superfamily 100.0 1.1E-28 2.4E-33 195.9 19.8 193 50-248 2-199 (221)
10 PRK09449 dUMP phosphatase; Pro 100.0 2.6E-28 5.6E-33 194.1 21.1 192 48-245 1-197 (224)
11 KOG3085 Predicted hydrolase (H 100.0 1E-28 2.2E-33 191.8 17.6 210 47-256 4-225 (237)
12 PRK13478 phosphonoacetaldehyde 100.0 2.1E-28 4.5E-33 199.4 20.1 196 47-248 1-207 (267)
13 PRK10826 2-deoxyglucose-6-phos 100.0 2.4E-28 5.1E-33 194.0 19.8 186 48-247 5-195 (222)
14 COG0637 Predicted phosphatase/ 100.0 1.8E-28 3.9E-33 193.6 17.2 183 49-246 1-188 (221)
15 PLN02575 haloacid dehalogenase 100.0 1.4E-28 2.9E-33 205.1 17.0 184 49-246 130-318 (381)
16 TIGR01428 HAD_type_II 2-haloal 100.0 1.2E-28 2.6E-33 192.4 15.6 115 129-247 80-195 (198)
17 TIGR01449 PGP_bact 2-phosphogl 100.0 7.8E-28 1.7E-32 189.9 19.6 181 53-248 1-189 (213)
18 PRK11587 putative phosphatase; 100.0 7.6E-28 1.7E-32 190.5 19.1 180 48-247 1-185 (218)
19 PRK10725 fructose-1-P/6-phosph 100.0 5.3E-28 1.1E-32 187.2 17.8 181 47-244 2-186 (188)
20 PRK10563 6-phosphogluconate ph 100.0 1E-27 2.2E-32 190.3 18.2 181 48-245 2-187 (221)
21 TIGR01454 AHBA_synth_RP 3-amin 100.0 2.3E-27 5E-32 186.1 19.0 180 53-253 1-184 (205)
22 TIGR01990 bPGM beta-phosphoglu 100.0 2E-27 4.4E-32 183.5 18.4 177 52-244 1-185 (185)
23 TIGR02009 PGMB-YQAB-SF beta-ph 100.0 2.7E-27 5.8E-32 182.8 19.0 178 50-243 1-185 (185)
24 TIGR02254 YjjG/YfnB HAD superf 100.0 5.3E-27 1.1E-31 186.6 20.9 193 50-246 1-200 (224)
25 PRK13223 phosphoglycolate phos 100.0 3.5E-27 7.7E-32 192.1 18.8 184 49-247 12-204 (272)
26 PRK13222 phosphoglycolate phos 100.0 6.2E-27 1.3E-31 186.5 19.6 186 47-247 3-196 (226)
27 PRK14988 GMP/IMP nucleotidase; 100.0 1.6E-26 3.4E-31 183.3 19.6 103 143-246 92-196 (224)
28 PLN02940 riboflavin kinase 100.0 1.2E-26 2.7E-31 196.9 19.8 185 48-247 9-197 (382)
29 PRK10748 flavin mononucleotide 99.9 1.8E-26 3.9E-31 184.8 18.8 192 48-246 8-210 (238)
30 PF13419 HAD_2: Haloacid dehal 99.9 4.6E-27 1E-31 179.6 14.3 174 53-243 1-176 (176)
31 TIGR02247 HAD-1A3-hyp Epoxide 99.9 4.8E-27 1E-31 185.1 13.5 203 50-257 2-209 (211)
32 PRK13225 phosphoglycolate phos 99.9 4.3E-26 9.3E-31 185.1 19.3 184 48-254 60-249 (273)
33 COG1011 Predicted hydrolase (H 99.9 4.4E-26 9.6E-31 181.9 17.8 195 47-247 1-202 (229)
34 PLN02779 haloacid dehalogenase 99.9 1.8E-25 3.9E-30 183.1 17.9 191 48-251 38-253 (286)
35 PRK09456 ?-D-glucose-1-phospha 99.9 4.4E-25 9.5E-30 172.3 18.3 193 52-256 2-197 (199)
36 PRK06698 bifunctional 5'-methy 99.9 4.7E-25 1E-29 192.4 19.8 185 44-246 235-429 (459)
37 PLN02919 haloacid dehalogenase 99.9 1.6E-24 3.5E-29 203.7 21.8 190 49-254 74-271 (1057)
38 TIGR01993 Pyr-5-nucltdase pyri 99.9 6.4E-25 1.4E-29 169.3 15.4 173 51-243 1-184 (184)
39 TIGR01548 HAD-SF-IA-hyp1 haloa 99.9 5E-24 1.1E-28 166.1 18.1 176 52-236 2-197 (197)
40 TIGR01509 HAD-SF-IA-v3 haloaci 99.9 6.9E-24 1.5E-28 163.4 16.1 100 143-243 84-183 (183)
41 PLN02811 hydrolase 99.9 4E-23 8.6E-28 163.7 18.1 178 57-249 1-189 (220)
42 TIGR01549 HAD-SF-IA-v1 haloaci 99.9 2.3E-23 4.9E-28 156.1 15.2 153 52-237 1-154 (154)
43 TIGR01493 HAD-SF-IA-v2 Haloaci 99.9 4.9E-24 1.1E-28 163.1 8.3 170 52-236 1-175 (175)
44 PHA02597 30.2 hypothetical pro 99.9 4.2E-22 9.2E-27 155.3 15.9 166 49-246 1-176 (197)
45 KOG2914 Predicted haloacid-hal 99.9 1.2E-21 2.5E-26 152.0 18.1 185 47-246 7-198 (222)
46 TIGR00338 serB phosphoserine p 99.9 1.4E-21 3.1E-26 154.8 18.5 184 47-256 11-205 (219)
47 TIGR01656 Histidinol-ppas hist 99.9 4.1E-22 8.8E-27 147.8 12.3 103 143-246 26-147 (147)
48 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.9 5.2E-21 1.1E-25 149.6 17.0 103 143-246 79-192 (201)
49 TIGR01261 hisB_Nterm histidino 99.9 6.2E-21 1.3E-25 142.8 14.5 112 143-257 28-160 (161)
50 PRK08942 D,D-heptose 1,7-bisph 99.9 1.5E-20 3.2E-25 144.5 15.1 102 143-247 28-150 (181)
51 TIGR01662 HAD-SF-IIIA HAD-supe 99.9 1.3E-20 2.8E-25 137.4 13.5 97 144-244 25-131 (132)
52 TIGR01691 enolase-ppase 2,3-di 99.9 6.3E-20 1.4E-24 143.9 16.9 128 117-247 65-199 (220)
53 PLN02954 phosphoserine phospha 99.8 3.8E-19 8.2E-24 141.4 18.8 170 48-242 10-194 (224)
54 PRK06769 hypothetical protein; 99.8 5.9E-20 1.3E-24 139.7 13.0 104 143-247 27-140 (173)
55 TIGR01685 MDP-1 magnesium-depe 99.8 1E-20 2.2E-25 142.4 8.6 105 143-248 44-161 (174)
56 TIGR00213 GmhB_yaeD D,D-heptos 99.8 1.2E-19 2.5E-24 138.8 14.5 103 143-248 25-155 (176)
57 PRK11133 serB phosphoserine ph 99.8 3.9E-19 8.5E-24 147.0 17.0 181 48-254 108-299 (322)
58 KOG3109 Haloacid dehalogenase- 99.8 4.6E-19 9.9E-24 133.3 15.5 181 49-247 14-208 (244)
59 TIGR01664 DNA-3'-Pase DNA 3'-p 99.8 1.2E-19 2.6E-24 136.7 11.5 96 144-241 42-159 (166)
60 TIGR01672 AphA HAD superfamily 99.8 8.4E-19 1.8E-23 138.5 15.1 95 144-246 114-213 (237)
61 PRK09552 mtnX 2-hydroxy-3-keto 99.8 8.6E-19 1.9E-23 138.7 14.3 167 50-241 3-184 (219)
62 cd01427 HAD_like Haloacid deha 99.8 1.3E-18 2.8E-23 127.2 11.2 100 143-243 23-139 (139)
63 PRK05446 imidazole glycerol-ph 99.8 7E-18 1.5E-22 140.4 15.9 115 143-260 29-164 (354)
64 TIGR01668 YqeG_hyp_ppase HAD s 99.8 1.1E-17 2.4E-22 126.9 12.9 101 144-253 43-145 (170)
65 PRK13582 thrH phosphoserine ph 99.8 4E-17 8.7E-22 128.0 15.9 97 143-241 67-168 (205)
66 TIGR01490 HAD-SF-IB-hyp1 HAD-s 99.8 5.3E-17 1.1E-21 127.0 15.6 122 121-243 64-197 (202)
67 TIGR01489 DKMTPPase-SF 2,3-dik 99.7 1.1E-16 2.3E-21 123.8 16.4 93 143-239 71-184 (188)
68 TIGR01452 PGP_euk phosphoglyco 99.7 1E-17 2.3E-22 137.2 10.7 110 146-256 145-259 (279)
69 COG0560 SerB Phosphoserine pho 99.7 2.3E-16 4.9E-21 123.3 15.5 173 48-243 3-186 (212)
70 TIGR02137 HSK-PSP phosphoserin 99.7 8.5E-16 1.8E-20 119.5 18.5 173 51-258 2-196 (203)
71 TIGR01458 HAD-SF-IIA-hyp3 HAD- 99.7 5.4E-18 1.2E-22 137.0 5.0 104 146-249 122-229 (257)
72 TIGR01681 HAD-SF-IIIC HAD-supe 99.7 7.2E-17 1.6E-21 116.5 9.5 87 144-235 29-126 (128)
73 TIGR01670 YrbI-phosphatas 3-de 99.7 1.3E-17 2.7E-22 124.5 5.4 90 152-252 36-126 (154)
74 COG2179 Predicted hydrolase of 99.7 2.9E-16 6.2E-21 113.7 11.0 93 144-245 46-139 (175)
75 TIGR02726 phenyl_P_delta pheny 99.7 3.8E-17 8.3E-22 122.8 6.6 96 151-257 41-137 (169)
76 PHA02530 pseT polynucleotide k 99.7 2.5E-16 5.3E-21 130.7 10.5 102 144-246 187-298 (300)
77 TIGR01488 HAD-SF-IB Haloacid D 99.7 1.8E-15 3.9E-20 115.8 14.1 93 143-236 72-177 (177)
78 TIGR03333 salvage_mtnX 2-hydro 99.7 2.8E-15 6E-20 118.3 14.9 96 143-239 69-178 (214)
79 PRK11009 aphA acid phosphatase 99.7 1.3E-15 2.9E-20 120.3 12.9 96 143-248 113-215 (237)
80 COG0647 NagD Predicted sugar p 99.6 7.1E-15 1.5E-19 117.6 14.3 61 196-256 187-247 (269)
81 PF00702 Hydrolase: haloacid d 99.6 5.6E-16 1.2E-20 122.2 7.5 88 144-237 127-215 (215)
82 TIGR01457 HAD-SF-IIA-hyp2 HAD- 99.6 1.4E-15 3E-20 122.5 9.9 108 146-255 123-234 (249)
83 PLN02645 phosphoglycolate phos 99.6 3.1E-15 6.6E-20 124.3 10.0 106 150-255 176-286 (311)
84 PRK09484 3-deoxy-D-manno-octul 99.6 3.4E-15 7.5E-20 114.6 8.5 85 151-246 55-140 (183)
85 PRK11590 hypothetical protein; 99.6 6.9E-14 1.5E-18 110.0 15.8 181 49-241 5-200 (211)
86 PRK10444 UMP phosphatase; Prov 99.6 6.7E-15 1.5E-19 118.1 9.8 69 187-255 162-230 (248)
87 COG0241 HisB Histidinol phosph 99.6 8.5E-14 1.8E-18 104.4 13.3 100 144-246 31-151 (181)
88 TIGR01459 HAD-SF-IIA-hyp4 HAD- 99.6 1.9E-14 4.1E-19 115.6 9.0 98 146-244 140-241 (242)
89 TIGR01663 PNK-3'Pase polynucle 99.5 7.9E-14 1.7E-18 121.8 12.0 92 144-238 197-305 (526)
90 COG4229 Predicted enolase-phos 99.5 6.3E-13 1.4E-17 97.4 14.2 118 126-246 83-206 (229)
91 smart00577 CPDc catalytic doma 99.5 3.8E-14 8.1E-19 105.1 7.7 94 143-241 44-139 (148)
92 TIGR01686 FkbH FkbH-like domai 99.5 7.7E-14 1.7E-18 116.5 9.5 90 144-239 31-125 (320)
93 PRK10530 pyridoxal phosphate ( 99.5 8E-13 1.7E-17 108.1 14.0 110 146-257 139-254 (272)
94 TIGR02244 HAD-IG-Ncltidse HAD 99.5 4.2E-12 9E-17 105.2 17.9 103 143-245 183-324 (343)
95 PRK08238 hypothetical protein; 99.5 5.1E-12 1.1E-16 110.1 19.0 96 143-246 71-167 (479)
96 PTZ00445 p36-lilke protein; Pr 99.5 4.9E-13 1.1E-17 101.6 10.9 102 144-246 75-207 (219)
97 TIGR01544 HAD-SF-IE haloacid d 99.4 3.1E-12 6.6E-17 102.8 14.0 113 142-255 119-251 (277)
98 PF12689 Acid_PPase: Acid Phos 99.4 1E-12 2.2E-17 98.2 9.2 109 143-258 44-164 (169)
99 PF06888 Put_Phosphatase: Puta 99.4 1.3E-11 2.9E-16 97.1 15.9 110 143-253 70-205 (234)
100 COG1778 Low specificity phosph 99.4 3.1E-13 6.7E-18 96.8 5.2 95 152-257 43-138 (170)
101 KOG2882 p-Nitrophenyl phosphat 99.4 1.6E-11 3.5E-16 97.7 14.6 62 195-256 220-281 (306)
102 TIGR01545 YfhB_g-proteo haloac 99.4 7.6E-11 1.6E-15 92.4 18.4 97 144-242 94-200 (210)
103 PRK01158 phosphoglycolate phos 99.3 9.1E-13 2E-17 105.1 4.5 92 163-258 118-213 (230)
104 PF08645 PNK3P: Polynucleotide 99.3 1.4E-11 3E-16 92.1 10.1 95 144-240 28-152 (159)
105 KOG3040 Predicted sugar phosph 99.3 9.8E-12 2.1E-16 93.3 9.0 54 193-246 175-228 (262)
106 TIGR01460 HAD-SF-IIA Haloacid 99.3 2.6E-12 5.7E-17 102.7 6.0 51 196-246 185-236 (236)
107 PF13242 Hydrolase_like: HAD-h 99.3 8.8E-12 1.9E-16 81.2 6.3 59 197-255 2-60 (75)
108 PF09419 PGP_phosphatase: Mito 99.3 4.4E-11 9.6E-16 89.1 10.5 95 144-248 59-168 (168)
109 TIGR01482 SPP-subfamily Sucros 99.3 5.8E-12 1.3E-16 100.2 6.2 93 164-258 111-205 (225)
110 TIGR01533 lipo_e_P4 5'-nucleot 99.2 2.7E-10 5.8E-15 91.6 13.1 83 143-233 117-204 (266)
111 PRK10513 sugar phosphate phosp 99.2 1.3E-10 2.9E-15 94.9 11.2 60 197-258 193-252 (270)
112 TIGR01487 SPP-like sucrose-pho 99.2 4.5E-11 9.8E-16 94.4 6.9 91 165-258 112-203 (215)
113 PRK00192 mannosyl-3-phosphogly 99.2 2.3E-10 5E-15 93.7 11.2 54 195-251 186-240 (273)
114 KOG1615 Phosphoserine phosphat 99.2 8.3E-10 1.8E-14 82.2 12.9 162 49-235 15-191 (227)
115 PF12710 HAD: haloacid dehalog 99.2 3.4E-10 7.3E-15 87.6 11.3 84 147-234 92-192 (192)
116 TIGR01684 viral_ppase viral ph 99.2 1.5E-10 3.3E-15 92.9 8.8 57 147-203 149-206 (301)
117 KOG3120 Predicted haloacid deh 99.1 2.6E-09 5.7E-14 81.1 13.2 108 143-251 83-216 (256)
118 TIGR01456 CECR5 HAD-superfamil 99.1 1.3E-10 2.9E-15 97.0 6.5 54 196-249 230-296 (321)
119 COG0561 Cof Predicted hydrolas 99.1 2.5E-10 5.3E-15 93.1 6.5 61 195-257 184-244 (264)
120 TIGR01485 SPP_plant-cyano sucr 99.1 9.8E-09 2.1E-13 82.9 15.3 91 160-253 119-219 (249)
121 PRK15126 thiamin pyrimidine py 99.0 4.9E-09 1.1E-13 85.8 13.2 59 195-255 183-241 (272)
122 PLN02887 hydrolase family prot 99.0 4.5E-09 9.7E-14 93.5 13.6 62 195-258 502-563 (580)
123 PRK10976 putative hydrolase; P 99.0 1.2E-09 2.7E-14 89.0 8.9 59 195-255 185-243 (266)
124 TIGR02463 MPGP_rel mannosyl-3- 99.0 6.3E-09 1.4E-13 82.5 10.7 43 198-241 177-219 (221)
125 TIGR02251 HIF-SF_euk Dullard-l 99.0 1E-09 2.2E-14 82.5 5.8 97 143-244 41-139 (162)
126 PF13344 Hydrolase_6: Haloacid 98.9 1.4E-08 3E-13 70.0 10.0 83 144-238 14-100 (101)
127 TIGR00099 Cof-subfamily Cof su 98.9 5.9E-09 1.3E-13 84.6 9.4 61 195-257 183-243 (256)
128 TIGR02471 sucr_syn_bact_C sucr 98.9 6.6E-08 1.4E-12 77.4 15.0 91 161-255 113-212 (236)
129 PF06941 NT5C: 5' nucleotidase 98.9 1.5E-09 3.2E-14 84.1 4.3 110 129-258 55-186 (191)
130 COG4359 Uncharacterized conser 98.9 1.1E-07 2.4E-12 70.3 13.6 89 143-238 72-180 (220)
131 PHA03398 viral phosphatase sup 98.9 1.8E-08 4E-13 81.1 10.1 48 147-194 151-199 (303)
132 PF08282 Hydrolase_3: haloacid 98.9 6E-09 1.3E-13 83.9 7.1 58 198-257 184-241 (254)
133 COG4996 Predicted phosphatase 98.8 7.6E-09 1.7E-13 72.0 5.4 110 143-257 40-158 (164)
134 TIGR01459 HAD-SF-IIA-hyp4 HAD- 98.8 1.2E-08 2.6E-13 82.0 7.2 89 144-238 24-116 (242)
135 PRK03669 mannosyl-3-phosphogly 98.8 4.9E-08 1.1E-12 79.8 10.7 53 193-247 180-235 (271)
136 TIGR01525 ATPase-IB_hvy heavy 98.7 3.5E-08 7.6E-13 88.7 7.8 90 144-246 384-475 (556)
137 TIGR01512 ATPase-IB2_Cd heavy 98.7 3.5E-08 7.6E-13 88.2 7.2 88 144-244 362-451 (536)
138 smart00775 LNS2 LNS2 domain. T 98.6 7.4E-07 1.6E-11 66.5 10.6 93 145-240 28-142 (157)
139 TIGR01675 plant-AP plant acid 98.6 1.4E-06 3.1E-11 68.4 12.3 97 143-246 119-224 (229)
140 TIGR01486 HAD-SF-IIB-MPGP mann 98.6 4.9E-07 1.1E-11 73.3 10.1 52 195-248 171-224 (256)
141 TIGR01511 ATPase-IB1_Cu copper 98.6 7.7E-08 1.7E-12 86.4 5.9 89 144-246 405-494 (562)
142 PRK10671 copA copper exporting 98.6 2.2E-07 4.7E-12 87.4 8.2 90 144-246 650-740 (834)
143 KOG2630 Enolase-phosphatase E- 98.5 4.4E-06 9.6E-11 64.2 12.9 101 143-246 122-226 (254)
144 TIGR01680 Veg_Stor_Prot vegeta 98.5 1.9E-06 4.2E-11 68.8 11.4 101 143-249 144-254 (275)
145 PF03767 Acid_phosphat_B: HAD 98.5 2E-07 4.2E-12 74.0 5.8 99 143-247 114-225 (229)
146 PRK14502 bifunctional mannosyl 98.5 7.7E-06 1.7E-10 73.5 15.9 51 198-250 611-663 (694)
147 PTZ00174 phosphomannomutase; P 98.4 3.5E-07 7.6E-12 73.8 5.6 60 195-259 183-246 (247)
148 PF05116 S6PP: Sucrose-6F-phos 98.4 1E-06 2.2E-11 71.0 7.6 51 196-248 161-211 (247)
149 PLN02382 probable sucrose-phos 98.4 7.8E-06 1.7E-10 70.7 13.3 58 195-253 170-230 (413)
150 TIGR02461 osmo_MPG_phos mannos 98.3 2.2E-05 4.8E-10 62.3 13.2 42 199-241 180-223 (225)
151 COG3700 AphA Acid phosphatase 98.3 5E-06 1.1E-10 61.4 8.1 92 147-246 117-213 (237)
152 TIGR01522 ATPase-IIA2_Ca golgi 98.2 3.3E-06 7.2E-11 79.9 7.8 99 144-244 528-643 (884)
153 COG4087 Soluble P-type ATPase 98.2 4.1E-05 8.9E-10 53.7 10.7 92 144-246 30-122 (152)
154 PRK12702 mannosyl-3-phosphogly 98.2 0.00014 3.1E-09 59.1 14.8 44 198-242 206-251 (302)
155 PF05761 5_nucleotid: 5' nucle 98.2 1.2E-05 2.7E-10 69.6 9.4 103 143-245 182-325 (448)
156 PLN02177 glycerol-3-phosphate 98.2 0.00012 2.7E-09 64.4 15.6 93 144-242 110-213 (497)
157 COG5663 Uncharacterized conser 98.2 1.5E-05 3.3E-10 58.3 8.0 88 144-246 72-163 (194)
158 COG2503 Predicted secreted aci 98.1 2.9E-05 6.4E-10 60.4 9.4 84 143-233 121-209 (274)
159 PF03031 NIF: NLI interacting 98.1 5.3E-06 1.1E-10 62.2 5.0 92 143-239 35-128 (159)
160 PRK11033 zntA zinc/cadmium/mer 98.1 1.6E-05 3.5E-10 73.8 9.0 88 144-246 568-656 (741)
161 COG5610 Predicted hydrolase (H 98.1 3E-05 6.4E-10 65.6 9.2 100 143-242 96-200 (635)
162 PLN02645 phosphoglycolate phos 98.0 5.4E-05 1.2E-09 63.2 9.9 88 144-241 44-135 (311)
163 PF11019 DUF2608: Protein of u 98.0 0.00036 7.8E-09 56.2 13.7 100 144-244 81-209 (252)
164 PF05152 DUF705: Protein of un 97.9 0.00011 2.3E-09 58.9 9.9 79 146-225 144-254 (297)
165 TIGR01689 EcbF-BcbF capsule bi 97.9 0.00011 2.3E-09 52.4 8.7 47 144-192 24-86 (126)
166 TIGR02250 FCP1_euk FCP1-like p 97.9 6E-05 1.3E-09 56.1 7.6 77 143-225 57-136 (156)
167 TIGR01497 kdpB K+-transporting 97.9 3.6E-05 7.8E-10 70.1 7.5 96 144-252 446-542 (675)
168 TIGR01116 ATPase-IIA1_Ca sarco 97.9 2.7E-05 5.9E-10 74.1 6.6 103 144-248 537-660 (917)
169 PRK14010 potassium-transportin 97.8 8E-05 1.7E-09 67.9 8.0 101 144-257 441-542 (673)
170 PF08235 LNS2: LNS2 (Lipin/Ned 97.8 0.00035 7.6E-09 51.6 9.3 91 145-240 28-142 (157)
171 PRK01122 potassium-transportin 97.7 0.00012 2.7E-09 66.8 7.9 101 144-257 445-546 (679)
172 TIGR02245 HAD_IIID1 HAD-superf 97.7 0.00064 1.4E-08 52.4 10.4 91 144-240 45-152 (195)
173 COG2217 ZntA Cation transport 97.6 0.00017 3.7E-09 66.0 7.6 98 144-254 537-635 (713)
174 TIGR01658 EYA-cons_domain eyes 97.6 0.00042 9.1E-09 54.2 7.6 81 163-248 178-261 (274)
175 KOG2470 Similar to IMP-GMP spe 97.6 0.00029 6.3E-09 57.8 6.9 98 146-243 242-374 (510)
176 TIGR01524 ATPase-IIIB_Mg magne 97.4 0.00056 1.2E-08 64.9 8.2 110 144-257 515-641 (867)
177 KOG1618 Predicted phosphatase 97.4 0.0024 5.2E-08 52.0 10.3 54 196-249 268-345 (389)
178 TIGR01647 ATPase-IIIA_H plasma 97.4 0.00035 7.6E-09 65.2 6.2 108 144-256 442-572 (755)
179 PRK15122 magnesium-transportin 97.4 0.00079 1.7E-08 64.1 8.3 110 144-257 550-676 (903)
180 PRK10517 magnesium-transportin 97.3 0.00081 1.8E-08 63.9 8.0 110 144-257 550-676 (902)
181 KOG2134 Polynucleotide kinase 97.3 0.00089 1.9E-08 55.8 7.1 96 144-241 104-230 (422)
182 PRK14501 putative bifunctional 97.3 0.0033 7.2E-08 58.7 11.2 58 197-257 654-720 (726)
183 TIGR01517 ATPase-IIB_Ca plasma 97.3 0.00077 1.7E-08 64.6 7.1 103 144-248 579-699 (941)
184 TIGR01484 HAD-SF-IIB HAD-super 97.2 0.00044 9.5E-09 54.0 4.5 46 195-241 158-203 (204)
185 TIGR01452 PGP_euk phosphoglyco 97.2 0.0069 1.5E-07 49.8 11.7 86 144-240 18-107 (279)
186 PLN02205 alpha,alpha-trehalose 97.2 0.00036 7.9E-09 65.6 4.3 61 197-258 759-842 (854)
187 TIGR01523 ATPase-IID_K-Na pota 97.2 0.0013 2.8E-08 63.6 7.6 102 144-247 646-775 (1053)
188 TIGR00685 T6PP trehalose-phosp 97.0 0.0022 4.8E-08 51.6 6.2 58 200-258 167-240 (244)
189 COG3882 FkbH Predicted enzyme 96.9 0.0081 1.8E-07 51.8 9.3 89 144-238 255-348 (574)
190 PRK10187 trehalose-6-phosphate 96.8 0.0079 1.7E-07 49.1 8.4 61 196-257 170-240 (266)
191 COG4502 5'(3')-deoxyribonucleo 96.8 0.009 2E-07 42.7 7.4 94 143-257 67-174 (180)
192 TIGR01484 HAD-SF-IIB HAD-super 96.8 0.0032 7E-08 49.1 5.9 34 147-180 20-54 (204)
193 PLN02499 glycerol-3-phosphate 96.8 0.049 1.1E-06 47.8 13.3 78 152-234 101-189 (498)
194 COG0474 MgtA Cation transport 96.8 0.0039 8.5E-08 59.5 7.2 112 144-256 547-677 (917)
195 TIGR01457 HAD-SF-IIA-hyp2 HAD- 96.7 0.04 8.6E-07 44.5 11.9 50 144-193 17-70 (249)
196 PF06189 5-nucleotidase: 5'-nu 96.7 0.012 2.7E-07 46.8 8.2 74 160-249 186-263 (264)
197 KOG0207 Cation transport ATPas 96.6 0.0099 2.1E-07 55.1 7.9 99 144-255 723-822 (951)
198 TIGR01106 ATPase-IIC_X-K sodiu 96.6 0.007 1.5E-07 58.5 7.3 99 144-244 568-709 (997)
199 PRK10187 trehalose-6-phosphate 96.5 0.0068 1.5E-07 49.4 6.1 37 145-181 37-75 (266)
200 PF05822 UMPH-1: Pyrimidine 5' 96.3 0.018 4E-07 45.8 7.0 111 141-253 87-217 (246)
201 KOG2961 Predicted hydrolase (H 96.3 0.0038 8.2E-08 45.2 2.8 96 144-249 61-172 (190)
202 COG4030 Uncharacterized protei 96.3 0.4 8.7E-06 37.6 13.8 39 143-182 82-121 (315)
203 KOG0202 Ca2+ transporting ATPa 96.3 0.015 3.4E-07 53.4 7.1 112 144-257 584-717 (972)
204 COG2216 KdpB High-affinity K+ 96.2 0.19 4.1E-06 44.1 12.7 99 146-257 449-548 (681)
205 KOG3128 Uncharacterized conser 96.1 0.02 4.4E-07 45.2 6.3 113 140-254 134-267 (298)
206 TIGR01494 ATPase_P-type ATPase 96.0 0.039 8.5E-07 49.3 8.6 82 144-240 347-429 (499)
207 PRK10444 UMP phosphatase; Prov 96.0 0.16 3.6E-06 40.9 11.3 49 144-192 17-69 (248)
208 PLN02423 phosphomannomutase 96.0 0.0059 1.3E-07 49.2 2.9 55 195-255 184-242 (245)
209 TIGR01458 HAD-SF-IIA-hyp3 HAD- 95.9 0.068 1.5E-06 43.4 8.8 49 144-192 21-73 (257)
210 TIGR01657 P-ATPase-V P-type AT 95.5 0.15 3.3E-06 49.9 11.0 40 144-183 656-696 (1054)
211 COG3769 Predicted hydrolase (H 95.5 0.28 6.1E-06 38.3 10.1 93 146-244 136-235 (274)
212 PLN02423 phosphomannomutase 95.4 0.018 3.8E-07 46.4 3.6 30 49-78 5-35 (245)
213 TIGR01460 HAD-SF-IIA Haloacid 94.9 0.19 4.1E-06 40.2 8.3 83 144-238 14-101 (236)
214 TIGR01652 ATPase-Plipid phosph 94.8 0.16 3.4E-06 49.8 8.7 39 144-182 631-670 (1057)
215 COG4850 Uncharacterized conser 94.7 0.33 7.1E-06 40.1 8.8 84 143-232 195-293 (373)
216 PLN03017 trehalose-phosphatase 94.3 0.1 2.2E-06 44.3 5.5 58 200-258 283-356 (366)
217 PLN02580 trehalose-phosphatase 94.3 0.086 1.9E-06 45.1 5.1 57 200-258 301-374 (384)
218 PLN02151 trehalose-phosphatase 93.8 0.14 3E-06 43.3 5.4 56 201-258 270-342 (354)
219 KOG3189 Phosphomannomutase [Li 93.5 0.19 4.2E-06 38.4 5.1 48 144-194 28-77 (252)
220 COG1877 OtsB Trehalose-6-phosp 93.1 0.17 3.8E-06 41.0 4.7 36 201-237 183-218 (266)
221 KOG4549 Magnesium-dependent ph 93.0 1 2.3E-05 31.8 7.7 81 143-229 43-134 (144)
222 KOG2882 p-Nitrophenyl phosphat 92.8 1.7 3.7E-05 35.6 9.9 87 144-241 38-129 (306)
223 KOG2116 Protein involved in pl 92.2 0.29 6.3E-06 44.1 5.1 92 148-240 562-673 (738)
224 PLN02580 trehalose-phosphatase 92.0 0.67 1.5E-05 39.8 7.0 34 173-210 306-341 (384)
225 KOG3107 Predicted haloacid deh 92.0 3.4 7.5E-05 35.0 10.8 90 161-257 371-463 (468)
226 KOG2469 IMP-GMP specific 5'-nu 91.8 0.93 2E-05 38.7 7.5 100 147-246 201-335 (424)
227 TIGR01456 CECR5 HAD-superfamil 90.7 0.93 2E-05 38.1 6.7 84 144-241 16-108 (321)
228 KOG3040 Predicted sugar phosph 90.6 1.7 3.6E-05 33.8 7.2 90 144-244 23-116 (262)
229 KOG1605 TFIIF-interacting CTD 90.4 0.049 1.1E-06 43.9 -1.2 104 143-257 130-240 (262)
230 COG5083 SMP2 Uncharacterized p 90.4 0.17 3.6E-06 43.4 1.8 43 49-96 374-416 (580)
231 PRK00192 mannosyl-3-phosphogly 90.3 0.6 1.3E-05 38.2 5.1 43 144-186 21-64 (273)
232 PLN03190 aminophospholipid tra 89.7 0.81 1.7E-05 45.3 6.1 35 144-178 726-761 (1178)
233 CHL00162 thiG thiamin biosynth 89.3 10 0.00022 30.5 11.3 101 143-248 117-222 (267)
234 PF02571 CbiJ: Precorrin-6x re 88.9 8.7 0.00019 31.0 10.5 114 143-259 112-249 (249)
235 KOG0323 TFIIF-interacting CTD 88.6 2 4.4E-05 39.2 7.3 56 143-199 200-258 (635)
236 TIGR02461 osmo_MPG_phos mannos 88.5 1 2.2E-05 35.7 5.0 39 146-184 17-56 (225)
237 PF02358 Trehalose_PPase: Treh 88.3 0.51 1.1E-05 37.7 3.2 45 201-246 166-218 (235)
238 PRK08883 ribulose-phosphate 3- 88.2 3.8 8.2E-05 32.4 7.9 98 146-247 92-198 (220)
239 PLN03063 alpha,alpha-trehalose 87.8 0.81 1.7E-05 43.5 4.6 36 144-179 532-569 (797)
240 cd04728 ThiG Thiazole synthase 87.4 13 0.00029 29.7 11.6 99 143-249 103-209 (248)
241 PLN03064 alpha,alpha-trehalose 87.4 1.5 3.3E-05 42.1 6.1 38 144-181 622-661 (934)
242 TIGR01487 SPP-like sucrose-pho 87.2 1.2 2.6E-05 34.9 4.6 40 144-183 18-58 (215)
243 TIGR02463 MPGP_rel mannosyl-3- 86.7 1.3 2.8E-05 34.8 4.6 37 147-183 19-56 (221)
244 PLN02334 ribulose-phosphate 3- 86.7 12 0.00026 29.7 10.1 97 148-247 103-205 (229)
245 PRK01158 phosphoglycolate phos 86.5 1.4 3.1E-05 34.7 4.8 41 144-184 20-61 (230)
246 TIGR00685 T6PP trehalose-phosp 86.2 0.65 1.4E-05 37.3 2.7 15 50-64 3-17 (244)
247 TIGR01486 HAD-SF-IIB-MPGP mann 85.9 2.2 4.8E-05 34.4 5.7 37 147-183 19-56 (256)
248 PRK15126 thiamin pyrimidine py 85.6 1.6 3.5E-05 35.6 4.8 41 144-184 19-60 (272)
249 PF05690 ThiG: Thiazole biosyn 85.5 15 0.00032 29.3 9.6 100 144-247 104-207 (247)
250 TIGR00099 Cof-subfamily Cof su 85.5 1.9 4E-05 34.8 5.1 40 144-183 16-56 (256)
251 PRK08005 epimerase; Validated 84.9 17 0.00037 28.5 10.0 101 147-247 93-194 (210)
252 PRK10976 putative hydrolase; P 84.4 2 4.3E-05 34.9 4.8 41 144-184 19-60 (266)
253 PRK11840 bifunctional sulfur c 84.1 23 0.0005 29.7 10.7 100 143-250 177-284 (326)
254 TIGR01482 SPP-subfamily Sucros 83.9 2.2 4.7E-05 33.5 4.7 40 144-183 15-55 (225)
255 PRK10530 pyridoxal phosphate ( 83.8 2.3 5E-05 34.5 5.0 40 144-183 20-60 (272)
256 PRK00208 thiG thiazole synthas 83.7 21 0.00046 28.7 11.4 99 144-249 104-209 (250)
257 KOG1618 Predicted phosphatase 83.0 5.7 0.00012 33.0 6.7 85 144-242 51-144 (389)
258 PRK03669 mannosyl-3-phosphogly 83.0 3.2 7E-05 33.8 5.5 38 146-183 26-64 (271)
259 PRK12702 mannosyl-3-phosphogly 82.9 2.6 5.7E-05 34.8 4.8 41 144-184 18-59 (302)
260 COG0561 Cof Predicted hydrolas 82.4 2.6 5.6E-05 34.1 4.7 41 144-184 20-61 (264)
261 COG2022 ThiG Uncharacterized e 82.4 20 0.00044 28.5 9.1 103 143-252 110-219 (262)
262 PF06437 ISN1: IMP-specific 5' 81.5 1.8 3.9E-05 36.8 3.4 46 203-250 352-405 (408)
263 COG2099 CobK Precorrin-6x redu 80.7 17 0.00037 29.3 8.4 111 143-257 111-248 (257)
264 KOG0206 P-type ATPase [General 79.6 53 0.0011 32.8 12.8 29 144-172 651-679 (1151)
265 KOG0209 P-type ATPase [Inorgan 78.1 8.9 0.00019 36.3 6.9 32 216-248 806-837 (1160)
266 PRK08745 ribulose-phosphate 3- 77.9 27 0.00059 27.7 8.9 99 147-247 97-202 (223)
267 PRK08091 ribulose-phosphate 3- 76.9 34 0.00074 27.2 9.1 100 147-247 103-210 (228)
268 smart00577 CPDc catalytic doma 76.8 1.7 3.6E-05 32.0 1.7 15 51-65 3-17 (148)
269 COG0752 GlyQ Glycyl-tRNA synth 76.7 3.6 7.8E-05 32.6 3.5 45 198-242 85-135 (298)
270 PF09949 DUF2183: Uncharacteri 75.5 16 0.00035 24.9 6.1 33 200-234 50-82 (100)
271 PRK13125 trpA tryptophan synth 74.3 38 0.00083 27.1 9.1 96 147-247 116-217 (244)
272 TIGR02251 HIF-SF_euk Dullard-l 73.4 2.3 4.9E-05 31.8 1.7 15 51-65 2-16 (162)
273 PLN02151 trehalose-phosphatase 73.1 13 0.00028 31.7 6.2 34 173-210 274-309 (354)
274 TIGR02468 sucrsPsyn_pln sucros 73.0 13 0.00029 36.4 7.0 66 173-241 926-998 (1050)
275 cd00733 GlyRS_alpha_core Class 72.3 6.5 0.00014 31.4 4.0 42 201-242 87-130 (279)
276 PLN03017 trehalose-phosphatase 72.1 18 0.0004 30.9 7.0 45 173-225 288-335 (366)
277 COG0731 Fe-S oxidoreductases [ 71.9 18 0.00039 30.0 6.6 45 143-192 91-136 (296)
278 TIGR01485 SPP_plant-cyano sucr 70.9 10 0.00022 30.4 5.1 44 147-191 24-68 (249)
279 PRK09348 glyQ glycyl-tRNA synt 70.9 7.1 0.00015 31.3 3.9 41 202-242 92-134 (283)
280 TIGR02250 FCP1_euk FCP1-like p 70.9 2.8 6.2E-05 31.1 1.7 18 49-66 5-22 (156)
281 PF03808 Glyco_tran_WecB: Glyc 70.8 27 0.00058 26.3 7.1 22 151-172 39-60 (172)
282 COG0036 Rpe Pentose-5-phosphat 70.3 52 0.0011 26.0 9.7 102 144-249 93-202 (220)
283 TIGR00388 glyQ glycyl-tRNA syn 69.6 8.2 0.00018 31.1 4.0 41 202-242 89-131 (293)
284 PF03332 PMM: Eukaryotic phosp 69.4 5 0.00011 31.5 2.8 44 149-193 1-45 (220)
285 PTZ00170 D-ribulose-5-phosphat 67.9 51 0.0011 26.2 8.4 99 149-248 103-205 (228)
286 COG0761 lytB 4-Hydroxy-3-methy 67.1 55 0.0012 27.0 8.3 65 186-257 213-277 (294)
287 KOG0204 Calcium transporting A 66.9 25 0.00053 33.6 7.0 94 144-240 647-761 (1034)
288 PF06506 PrpR_N: Propionate ca 66.6 11 0.00025 28.4 4.3 91 144-250 58-156 (176)
289 PRK00994 F420-dependent methyl 66.3 67 0.0014 25.7 9.6 82 159-246 30-118 (277)
290 TIGR02329 propionate_PrpR prop 65.2 32 0.0007 31.2 7.5 86 148-246 85-172 (526)
291 PF04413 Glycos_transf_N: 3-De 64.7 17 0.00036 27.9 4.9 94 125-231 82-185 (186)
292 TIGR00715 precor6x_red precorr 64.3 77 0.0017 25.7 11.0 53 203-258 187-252 (256)
293 PTZ00174 phosphomannomutase; P 64.2 19 0.00041 28.9 5.4 35 144-178 22-57 (247)
294 COG2241 CobL Precorrin-6B meth 62.7 74 0.0016 25.0 10.1 88 160-258 68-161 (210)
295 cd06533 Glyco_transf_WecG_TagA 60.2 43 0.00094 25.2 6.4 21 151-171 37-57 (171)
296 PLN02887 hydrolase family prot 58.0 18 0.0004 33.1 4.7 40 144-183 325-365 (580)
297 PRK02261 methylaspartate mutas 57.9 69 0.0015 23.1 11.1 101 151-258 22-131 (137)
298 TIGR00262 trpA tryptophan synt 57.7 1E+02 0.0022 25.0 10.3 94 146-246 126-229 (256)
299 PF06014 DUF910: Bacterial pro 57.7 7.5 0.00016 23.8 1.5 25 205-234 7-31 (62)
300 PRK14502 bifunctional mannosyl 57.4 21 0.00045 33.3 4.9 38 146-183 435-473 (694)
301 TIGR03365 Bsubt_queE 7-cyano-7 57.1 68 0.0015 25.6 7.4 28 145-172 85-112 (238)
302 PF14336 DUF4392: Domain of un 56.8 67 0.0014 26.7 7.4 36 146-181 62-99 (291)
303 KOG2832 TFIIF-interacting CTD 56.1 47 0.001 28.4 6.3 75 146-225 216-291 (393)
304 PF02593 dTMP_synthase: Thymid 55.9 35 0.00075 26.9 5.3 92 144-240 59-157 (217)
305 PF02358 Trehalose_PPase: Treh 55.8 20 0.00044 28.4 4.2 13 54-66 1-13 (235)
306 TIGR00696 wecB_tagA_cpsF bacte 54.8 54 0.0012 24.9 6.1 23 151-173 39-61 (177)
307 TIGR02471 sucr_syn_bact_C sucr 54.4 33 0.00071 27.2 5.2 41 151-193 22-63 (236)
308 PRK13762 tRNA-modifying enzyme 54.3 25 0.00055 29.6 4.7 28 144-171 142-169 (322)
309 TIGR00236 wecB UDP-N-acetylglu 51.9 1.3E+02 0.0027 25.6 8.7 94 150-246 17-119 (365)
310 TIGR01501 MthylAspMutase methy 51.2 91 0.002 22.5 10.2 102 152-258 21-129 (134)
311 cd06831 PLPDE_III_ODC_like_AZI 50.8 1.2E+02 0.0026 26.4 8.3 44 209-256 73-117 (394)
312 PRK03692 putative UDP-N-acetyl 50.2 61 0.0013 26.1 6.0 70 151-225 96-166 (243)
313 cd00331 IGPS Indole-3-glycerol 49.8 1.2E+02 0.0026 23.6 10.6 105 147-257 108-214 (217)
314 PF05761 5_nucleotid: 5' nucle 49.5 20 0.00042 31.8 3.3 20 47-66 9-28 (448)
315 PRK15424 propionate catabolism 49.0 79 0.0017 28.8 7.1 86 148-246 95-182 (538)
316 cd01766 Ufm1 Urm1-like ubiquit 48.6 41 0.00089 21.3 3.7 44 197-241 24-67 (82)
317 PF02091 tRNA-synt_2e: Glycyl- 48.6 9.3 0.0002 30.8 1.1 41 201-241 86-128 (284)
318 cd04726 KGPDC_HPS 3-Keto-L-gul 46.7 1.3E+02 0.0028 23.0 10.5 101 149-257 92-199 (202)
319 COG1920 Predicted nucleotidylt 46.4 39 0.00084 26.1 4.0 42 219-260 138-184 (210)
320 COG1922 WecG Teichoic acid bio 46.2 79 0.0017 25.6 6.0 24 150-173 98-121 (253)
321 cd06539 CIDE_N_A CIDE_N domain 46.0 12 0.00026 24.1 1.1 16 51-66 41-56 (78)
322 PLN02591 tryptophan synthase 45.8 1.6E+02 0.0035 23.8 9.1 99 146-247 117-221 (250)
323 cd00429 RPE Ribulose-5-phospha 45.7 1.4E+02 0.003 22.9 8.2 103 147-254 92-204 (211)
324 cd06537 CIDE_N_B CIDE_N domain 45.5 12 0.00027 24.2 1.2 16 51-66 40-55 (81)
325 smart00266 CAD Domains present 45.4 12 0.00027 23.8 1.1 16 51-66 39-54 (74)
326 cd05015 SIS_PGI_1 Phosphogluco 44.6 1.3E+02 0.0027 22.3 7.1 86 159-247 48-140 (158)
327 TIGR02826 RNR_activ_nrdG3 anae 44.4 43 0.00092 24.6 4.0 25 147-171 75-99 (147)
328 PF04007 DUF354: Protein of un 43.8 2E+02 0.0044 24.4 9.2 89 150-246 17-112 (335)
329 KOG0210 P-type ATPase [Inorgan 43.7 62 0.0013 30.4 5.5 89 146-240 713-804 (1051)
330 PRK05581 ribulose-phosphate 3- 43.4 1.5E+02 0.0034 22.9 8.9 97 147-248 96-202 (220)
331 COG0826 Collagenase and relate 43.4 65 0.0014 27.5 5.4 102 147-260 49-159 (347)
332 PF01114 Colipase: Colipase, N 42.9 6.5 0.00014 21.5 -0.4 13 3-15 19-31 (40)
333 COG0505 CarA Carbamoylphosphat 42.8 2.2E+02 0.0047 24.5 8.7 90 146-246 186-277 (368)
334 PF02401 LYTB: LytB protein; 42.5 1.6E+02 0.0035 24.3 7.4 66 185-257 209-274 (281)
335 COG0381 WecB UDP-N-acetylgluco 42.3 1.5E+02 0.0033 25.7 7.4 93 151-246 21-125 (383)
336 PRK00043 thiE thiamine-phospha 42.3 1.6E+02 0.0034 22.7 9.0 90 151-247 95-191 (212)
337 PF13580 SIS_2: SIS domain; PD 41.3 1.3E+02 0.0029 21.5 8.6 96 147-243 22-136 (138)
338 PF03332 PMM: Eukaryotic phosp 41.1 3.9 8.4E-05 32.1 -2.0 42 216-257 175-219 (220)
339 PF13911 AhpC-TSA_2: AhpC/TSA 41.1 97 0.0021 21.2 5.3 38 151-191 4-42 (115)
340 COG0019 LysA Diaminopimelate d 41.0 2.5E+02 0.0053 24.6 10.4 78 160-255 52-132 (394)
341 cd01615 CIDE_N CIDE_N domain, 40.6 16 0.00035 23.6 1.1 16 51-66 41-56 (78)
342 PRK00286 xseA exodeoxyribonucl 40.2 2.3E+02 0.0049 25.0 8.6 20 161-180 136-156 (438)
343 PF04358 DsrC: DsrC like prote 39.9 1.3E+02 0.0027 20.9 6.0 37 51-87 7-43 (109)
344 cd02071 MM_CoA_mut_B12_BD meth 39.9 1.3E+02 0.0028 21.0 10.5 99 152-257 19-120 (122)
345 TIGR01101 V_ATP_synt_F vacuola 39.5 1.3E+02 0.0029 21.0 5.7 62 147-210 46-110 (115)
346 cd04729 NanE N-acetylmannosami 39.3 1.8E+02 0.004 22.6 11.0 100 148-255 110-217 (219)
347 cd06536 CIDE_N_ICAD CIDE_N dom 39.2 17 0.00037 23.6 1.1 16 51-66 43-58 (80)
348 TIGR03151 enACPred_II putative 39.2 2.3E+02 0.005 23.7 9.8 89 150-246 99-192 (307)
349 PRK12360 4-hydroxy-3-methylbut 38.7 2.3E+02 0.0049 23.5 8.5 101 147-257 170-274 (281)
350 COG4483 Uncharacterized protei 37.7 42 0.0009 20.7 2.5 25 205-234 7-31 (68)
351 PF02350 Epimerase_2: UDP-N-ac 37.1 55 0.0012 27.8 4.2 88 155-246 2-100 (346)
352 TIGR00237 xseA exodeoxyribonuc 36.8 2.6E+02 0.0057 24.7 8.4 20 161-180 130-150 (432)
353 cd06538 CIDE_N_FSP27 CIDE_N do 36.6 20 0.00043 23.2 1.1 16 51-66 40-55 (79)
354 COG1834 N-Dimethylarginine dim 36.4 1.4E+02 0.0029 24.5 6.0 65 151-215 42-107 (267)
355 PRK14908 glycyl-tRNA synthetas 36.4 50 0.0011 32.4 4.1 42 201-242 92-135 (1000)
356 PF06189 5-nucleotidase: 5'-nu 36.0 2E+02 0.0043 23.5 6.7 68 160-243 36-108 (264)
357 KOG2469 IMP-GMP specific 5'-nu 35.5 30 0.00065 29.9 2.2 19 47-65 24-42 (424)
358 TIGR02668 moaA_archaeal probab 35.2 2.1E+02 0.0046 23.6 7.3 39 144-182 68-109 (302)
359 TIGR02495 NrdG2 anaerobic ribo 35.1 95 0.0021 23.5 4.9 28 144-171 74-101 (191)
360 PF13382 Adenine_deam_C: Adeni 34.7 97 0.0021 23.5 4.7 37 209-246 58-98 (171)
361 cd05014 SIS_Kpsf KpsF-like pro 34.5 55 0.0012 22.8 3.3 27 146-172 60-86 (128)
362 PRK04302 triosephosphate isome 34.3 2.3E+02 0.005 22.3 9.0 108 144-256 98-214 (223)
363 PF00834 Ribul_P_3_epim: Ribul 34.2 34 0.00074 26.6 2.3 96 145-245 90-195 (201)
364 PF00532 Peripla_BP_1: Peripla 34.1 2.6E+02 0.0056 22.8 8.0 56 153-214 24-80 (279)
365 cd07043 STAS_anti-anti-sigma_f 33.7 1.1E+02 0.0024 19.8 4.5 36 150-186 60-95 (99)
366 PF00072 Response_reg: Respons 33.4 1.4E+02 0.0031 19.6 11.5 94 154-257 16-111 (112)
367 PF13704 Glyco_tranf_2_4: Glyc 33.3 1.4E+02 0.003 19.5 7.4 32 149-180 7-40 (97)
368 PLN02951 Molybderin biosynthes 33.1 3.2E+02 0.007 23.6 8.3 39 144-182 118-160 (373)
369 PF01993 MTD: methylene-5,6,7, 33.1 2E+02 0.0044 23.2 6.2 82 159-246 29-117 (276)
370 PF02017 CIDE-N: CIDE-N domain 33.0 27 0.00059 22.6 1.3 16 51-66 41-56 (78)
371 cd05008 SIS_GlmS_GlmD_1 SIS (S 32.8 59 0.0013 22.6 3.2 27 146-172 59-85 (126)
372 PF07279 DUF1442: Protein of u 32.6 2.5E+02 0.0055 22.2 9.1 53 202-256 82-135 (218)
373 COG3769 Predicted hydrolase (H 32.2 83 0.0018 25.0 4.0 35 149-183 28-63 (274)
374 PF12261 T_hemolysin: Thermost 32.0 1.2E+02 0.0025 23.3 4.7 32 151-183 107-138 (179)
375 TIGR02886 spore_II_AA anti-sig 31.4 1.3E+02 0.0029 20.0 4.7 35 151-186 62-96 (106)
376 TIGR02990 ectoine_eutA ectoine 31.0 2.8E+02 0.0061 22.2 9.6 83 143-225 102-190 (239)
377 PRK00955 hypothetical protein; 30.9 3.2E+02 0.0069 25.6 8.0 110 148-259 31-179 (620)
378 TIGR03128 RuMP_HxlA 3-hexulose 30.8 2.5E+02 0.0054 21.5 10.5 93 149-248 91-190 (206)
379 COG5190 FCP1 TFIIF-interacting 30.4 1.3E+02 0.0029 26.1 5.3 81 145-229 253-334 (390)
380 cd02071 MM_CoA_mut_B12_BD meth 30.4 1.2E+02 0.0026 21.2 4.4 19 150-168 40-58 (122)
381 PF05116 S6PP: Sucrose-6F-phos 30.2 1E+02 0.0022 24.8 4.5 42 151-193 26-68 (247)
382 KOG3483 Uncharacterized conser 30.1 92 0.002 19.8 3.2 45 195-240 33-77 (94)
383 TIGR00661 MJ1255 conserved hyp 30.0 3.2E+02 0.007 22.7 8.4 26 220-245 96-121 (321)
384 PF03603 DNA_III_psi: DNA poly 30.0 1.1E+02 0.0024 21.9 4.1 74 156-236 9-82 (128)
385 PRK10076 pyruvate formate lyas 29.9 74 0.0016 25.0 3.5 27 145-171 51-78 (213)
386 PF12345 DUF3641: Protein of u 29.6 24 0.00052 25.3 0.6 28 38-65 58-85 (134)
387 PF05240 APOBEC_C: APOBEC-like 29.6 69 0.0015 19.1 2.5 22 147-168 2-23 (55)
388 PF02350 Epimerase_2: UDP-N-ac 29.6 3.2E+02 0.007 23.2 7.6 80 148-243 201-283 (346)
389 PF00578 AhpC-TSA: AhpC/TSA fa 29.5 99 0.0021 21.1 3.9 36 147-182 46-82 (124)
390 TIGR00067 glut_race glutamate 29.5 1.8E+02 0.0039 23.5 5.7 8 187-194 25-32 (251)
391 PRK05294 carB carbamoyl phosph 29.3 4.5E+02 0.0097 26.5 9.4 55 201-257 128-192 (1066)
392 PF03193 DUF258: Protein of un 29.0 1.4E+02 0.0031 22.3 4.7 57 150-212 2-59 (161)
393 PRK12290 thiE thiamine-phospha 28.8 4.2E+02 0.009 23.6 8.0 84 159-247 299-395 (437)
394 TIGR02109 PQQ_syn_pqqE coenzym 28.8 1.3E+02 0.0028 25.6 5.1 39 144-182 65-106 (358)
395 KOG1014 17 beta-hydroxysteroid 28.7 2.3E+02 0.005 23.8 6.2 57 150-213 63-123 (312)
396 PF03671 Ufm1: Ubiquitin fold 28.7 27 0.00058 22.0 0.7 39 198-237 25-63 (76)
397 PRK08236 hypothetical protein; 28.7 1.9E+02 0.0042 22.6 5.7 20 162-181 3-22 (212)
398 PF07085 DRTGG: DRTGG domain; 28.5 92 0.002 21.0 3.5 41 216-257 40-81 (105)
399 TIGR01306 GMP_reduct_2 guanosi 28.5 3.7E+02 0.0079 22.8 8.6 56 187-246 110-167 (321)
400 COG0378 HypB Ni2+-binding GTPa 28.4 1.3E+02 0.0029 23.4 4.5 52 193-246 20-73 (202)
401 PRK00865 glutamate racemase; P 28.3 1.9E+02 0.0042 23.4 5.8 62 161-225 6-76 (261)
402 cd05710 SIS_1 A subgroup of th 27.9 87 0.0019 21.8 3.3 27 146-172 60-86 (120)
403 PRK06856 DNA polymerase III su 27.7 1.1E+02 0.0023 22.0 3.7 71 156-233 8-78 (128)
404 PF14213 DUF4325: Domain of un 27.7 88 0.0019 19.7 3.0 30 51-80 18-47 (74)
405 PRK08057 cobalt-precorrin-6x r 27.6 3.3E+02 0.0072 22.0 9.6 111 143-258 111-244 (248)
406 PRK09722 allulose-6-phosphate 27.6 3.2E+02 0.0069 21.8 9.7 95 148-245 96-198 (229)
407 PRK11508 sulfur transfer prote 27.5 2.2E+02 0.0047 19.8 7.0 37 51-87 7-43 (109)
408 PF09269 DUF1967: Domain of un 27.4 73 0.0016 19.9 2.5 20 205-224 45-64 (69)
409 TIGR03572 WbuZ glycosyl amidat 27.3 3.1E+02 0.0067 21.6 7.5 45 199-246 183-229 (232)
410 KOG0384 Chromodomain-helicase 27.3 2E+02 0.0043 29.1 6.3 24 149-172 688-711 (1373)
411 PF13604 AAA_30: AAA domain; P 27.2 2.9E+02 0.0062 21.2 8.3 73 150-225 36-130 (196)
412 cd07018 S49_SppA_67K_type Sign 27.1 3.1E+02 0.0067 21.5 9.8 75 150-232 68-147 (222)
413 PF09895 DUF2122: RecB-family 27.0 2E+02 0.0043 19.9 4.7 57 140-199 19-75 (106)
414 cd04795 SIS SIS domain. SIS (S 26.9 84 0.0018 19.9 2.9 22 146-167 60-81 (87)
415 smart00455 RBD Raf-like Ras-bi 26.6 68 0.0015 20.1 2.3 28 195-222 16-43 (70)
416 COG2897 SseA Rhodanese-related 26.6 96 0.0021 25.7 3.7 50 196-246 69-124 (285)
417 PRK06100 DNA polymerase III su 26.4 1.5E+02 0.0032 21.4 4.2 52 184-239 37-88 (132)
418 COG0378 HypB Ni2+-binding GTPa 26.3 3.2E+02 0.0069 21.4 7.1 71 149-225 30-105 (202)
419 PRK00973 glucose-6-phosphate i 26.3 4.7E+02 0.01 23.3 9.0 83 161-246 109-198 (446)
420 KOG0210 P-type ATPase [Inorgan 26.3 2.2E+02 0.0047 27.1 6.0 39 144-182 658-697 (1051)
421 TIGR00377 ant_ant_sig anti-ant 26.2 1.8E+02 0.0038 19.4 4.6 36 151-187 66-101 (108)
422 PRK15317 alkyl hydroperoxide r 26.0 4.6E+02 0.01 23.7 8.4 96 146-245 131-242 (517)
423 TIGR03140 AhpF alkyl hydropero 26.0 4.8E+02 0.01 23.6 8.5 98 145-244 131-242 (515)
424 PRK01189 V-type ATP synthase s 25.9 2.2E+02 0.0048 19.5 4.9 67 148-216 33-101 (104)
425 PF00696 AA_kinase: Amino acid 25.8 1.1E+02 0.0025 24.1 4.1 37 148-184 21-57 (242)
426 smart00540 LEM in nuclear memb 25.8 69 0.0015 18.1 1.9 29 150-178 9-38 (44)
427 TIGR00216 ispH_lytB (E)-4-hydr 25.7 3.9E+02 0.0084 22.1 7.7 65 186-257 209-273 (280)
428 PRK05301 pyrroloquinoline quin 25.6 1.4E+02 0.003 25.7 4.8 39 144-182 74-115 (378)
429 PF13034 DUF3895: Protein of u 25.5 2E+02 0.0042 18.6 5.3 48 123-170 18-71 (78)
430 PRK13361 molybdenum cofactor b 25.4 4.1E+02 0.0089 22.3 8.7 40 144-183 73-116 (329)
431 TIGR03127 RuMP_HxlB 6-phospho 25.2 93 0.002 23.3 3.3 27 146-172 85-111 (179)
432 COG3655 Predicted transcriptio 25.2 95 0.0021 19.8 2.7 24 202-225 45-68 (73)
433 PF02784 Orn_Arg_deC_N: Pyrido 25.2 1.5E+02 0.0033 23.7 4.7 10 151-160 34-43 (251)
434 COG3473 Maleate cis-trans isom 25.0 3.5E+02 0.0076 21.4 8.8 93 131-223 88-186 (238)
435 PF00875 DNA_photolyase: DNA p 25.0 95 0.0021 22.9 3.3 45 146-194 52-97 (165)
436 PRK13307 bifunctional formalde 24.8 4.7E+02 0.01 22.9 9.9 94 149-247 265-361 (391)
437 PRK00994 F420-dependent methyl 24.8 1.4E+02 0.0029 24.1 4.0 40 144-183 71-111 (277)
438 PF04413 Glycos_transf_N: 3-De 24.7 3.2E+02 0.0069 20.8 8.7 88 149-246 37-127 (186)
439 PRK01045 ispH 4-hydroxy-3-meth 24.7 4.2E+02 0.009 22.2 8.8 66 185-257 210-275 (298)
440 CHL00076 chlB photochlorophyll 24.5 2.8E+02 0.0061 25.2 6.6 40 201-246 362-401 (513)
441 PRK00087 4-hydroxy-3-methylbut 24.4 5.3E+02 0.012 24.2 8.6 66 185-257 206-271 (647)
442 TIGR03595 Obg_CgtA_exten Obg f 24.3 1.1E+02 0.0024 19.1 2.9 20 205-224 45-64 (69)
443 cd08574 GDPD_GDE_2_3_6 Glycero 24.3 2.1E+02 0.0045 23.0 5.3 38 150-191 213-250 (252)
444 KOG2826 Actin-related protein 24.1 44 0.00094 26.6 1.2 19 47-65 28-46 (301)
445 cd08564 GDPD_GsGDE_like Glycer 24.0 2E+02 0.0044 23.2 5.3 33 150-182 213-249 (265)
446 PRK00748 1-(5-phosphoribosyl)- 24.0 3.5E+02 0.0077 21.1 7.6 44 200-246 177-222 (233)
447 KOG0622 Ornithine decarboxylas 24.0 4.5E+02 0.0096 23.2 7.2 72 167-256 88-160 (448)
448 PF01380 SIS: SIS domain SIS d 24.0 1.1E+02 0.0023 21.2 3.3 26 147-172 67-92 (131)
449 cd06565 GH20_GcnA-like Glycosy 24.0 4.2E+02 0.0092 22.0 7.2 33 147-179 60-92 (301)
450 PRK14021 bifunctional shikimat 23.9 5.7E+02 0.012 23.4 9.8 96 147-246 195-304 (542)
451 TIGR03342 dsrC_tusE_dsvC sulfu 23.7 2.6E+02 0.0056 19.4 7.0 37 51-87 6-42 (108)
452 TIGR03470 HpnH hopanoid biosyn 23.6 91 0.002 26.2 3.2 28 143-170 83-110 (318)
453 cd08575 GDPD_GDE4_like Glycero 23.5 2E+02 0.0044 23.3 5.1 38 150-191 221-258 (264)
454 PRK06849 hypothetical protein; 23.3 4.4E+02 0.0096 22.6 7.5 40 201-242 116-157 (389)
455 cd06844 STAS Sulphate Transpor 23.3 2.2E+02 0.0047 18.8 4.6 35 149-184 60-94 (100)
456 cd05017 SIS_PGI_PMI_1 The memb 23.3 1.2E+02 0.0026 21.0 3.3 35 146-181 56-90 (119)
457 PF02602 HEM4: Uroporphyrinoge 23.2 1.7E+02 0.0038 22.7 4.6 22 149-170 31-52 (231)
458 cd08570 GDPD_YPL206cp_fungi Gl 23.0 2.6E+02 0.0056 22.1 5.6 39 149-191 193-231 (234)
459 TIGR00288 conserved hypothetic 22.9 3.3E+02 0.0071 20.4 5.6 11 51-61 25-35 (160)
460 PRK10765 nitroreductase A; Pro 22.9 1.2E+02 0.0026 24.2 3.7 34 228-261 114-147 (240)
461 COG1058 CinA Predicted nucleot 22.7 1E+02 0.0023 25.0 3.2 35 201-236 22-56 (255)
462 PRK13585 1-(5-phosphoribosyl)- 22.7 3.9E+02 0.0084 21.1 9.2 54 200-256 180-238 (241)
463 cd08555 PI-PLCc_GDPD_SF Cataly 22.7 2.6E+02 0.0057 20.9 5.4 34 149-182 138-172 (179)
464 cd05013 SIS_RpiR RpiR-like pro 22.6 1.1E+02 0.0023 21.4 3.1 26 147-172 74-99 (139)
465 KOG2836 Protein tyrosine phosp 22.5 2.6E+02 0.0057 20.3 4.8 71 148-222 29-102 (173)
466 PRK02615 thiamine-phosphate py 22.3 5E+02 0.011 22.2 9.5 43 202-247 283-325 (347)
467 KOG0024 Sorbitol dehydrogenase 22.2 3.2E+02 0.0069 23.3 5.9 50 207-259 187-236 (354)
468 TIGR01283 nifE nitrogenase mol 22.2 5.6E+02 0.012 22.8 10.6 37 201-243 383-419 (456)
469 PRK14057 epimerase; Provisiona 22.2 4.4E+02 0.0094 21.5 8.6 98 147-247 110-224 (254)
470 PF07453 NUMOD1: NUMOD1 domain 22.1 1.4E+02 0.003 15.7 2.7 28 51-82 2-29 (37)
471 PF08620 RPAP1_C: RPAP1-like, 22.0 36 0.00078 21.7 0.4 9 54-62 4-12 (73)
472 KOG1553 Predicted alpha/beta h 22.0 5.2E+02 0.011 22.3 7.2 32 204-236 298-329 (517)
473 PF08484 Methyltransf_14: C-me 22.0 3.4E+02 0.0074 20.2 6.1 47 146-193 54-101 (160)
474 COG0191 Fba Fructose/tagatose 21.9 4.7E+02 0.01 21.7 8.1 101 148-252 5-113 (286)
475 PF03465 eRF1_3: eRF1 domain 3 21.9 2.5E+02 0.0054 19.4 4.6 33 149-181 71-103 (113)
476 cd03018 PRX_AhpE_like Peroxire 21.8 2.1E+02 0.0046 20.3 4.6 36 147-182 49-85 (149)
477 PRK05752 uroporphyrinogen-III 21.7 4.2E+02 0.0092 21.2 6.8 17 241-257 133-149 (255)
478 PRK14501 putative bifunctional 21.6 1.2E+02 0.0026 28.8 3.9 37 145-181 515-553 (726)
479 PF01993 MTD: methylene-5,6,7, 21.6 1.4E+02 0.003 24.1 3.5 40 144-183 70-110 (276)
480 PLN02588 glycerol-3-phosphate 21.4 47 0.001 29.8 1.1 20 50-69 50-69 (525)
481 PRK05787 cobalt-precorrin-6Y C 21.4 3.8E+02 0.0083 20.5 10.4 92 158-258 65-163 (210)
482 cd08612 GDPD_GDE4 Glycerophosp 21.3 2.7E+02 0.006 23.0 5.6 38 150-191 251-288 (300)
483 cd05006 SIS_GmhA Phosphoheptos 21.3 1.2E+02 0.0027 22.7 3.3 26 146-171 114-139 (177)
484 cd00564 TMP_TenI Thiamine mono 21.2 3.6E+02 0.0077 20.1 10.1 89 151-247 86-181 (196)
485 cd08580 GDPD_Rv2277c_like Glyc 21.1 2.8E+02 0.006 22.6 5.4 38 150-191 219-257 (263)
486 PRK11303 DNA-binding transcrip 21.1 4.7E+02 0.01 21.4 7.9 12 71-82 82-93 (328)
487 PRK09454 ugpQ cytoplasmic glyc 20.9 3.1E+02 0.0067 21.9 5.7 38 150-191 199-236 (249)
488 TIGR00664 DNA_III_psi DNA poly 20.9 1.9E+02 0.0042 20.9 3.9 19 204-222 53-71 (133)
489 TIGR02493 PFLA pyruvate format 20.8 1.9E+02 0.0042 22.7 4.5 27 144-170 77-104 (235)
490 PF01740 STAS: STAS domain; I 20.8 1.7E+02 0.0038 19.8 3.8 37 149-186 69-105 (117)
491 cd06589 GH31 The enzymes of gl 20.6 1.3E+02 0.0028 24.4 3.5 27 144-170 63-89 (265)
492 TIGR00735 hisF imidazoleglycer 20.4 4.6E+02 0.0099 21.1 9.3 57 198-258 184-247 (254)
493 cd05005 SIS_PHI Hexulose-6-pho 20.3 1.3E+02 0.0029 22.5 3.3 27 146-172 88-114 (179)
494 PF08444 Gly_acyl_tr_C: Aralky 20.3 2E+02 0.0044 19.1 3.6 34 150-183 42-76 (89)
495 PRK09482 flap endonuclease-lik 20.1 1.2E+02 0.0025 24.8 3.0 34 206-240 157-194 (256)
496 cd08573 GDPD_GDE1 Glycerophosp 20.1 2.3E+02 0.0049 22.9 4.7 33 150-182 218-251 (258)
497 smart00497 IENR1 Intron encode 20.0 1.5E+02 0.0033 16.8 2.8 28 51-82 3-30 (53)
498 cd08582 GDPD_like_2 Glyceropho 20.0 3.1E+02 0.0068 21.5 5.5 39 149-191 190-228 (233)
No 1
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.97 E-value=1e-29 Score=200.71 Aligned_cols=187 Identities=19% Similarity=0.252 Sum_probs=144.0
Q ss_pred ccccEEEEccCCccccccccHHHHHHHHHHHhCCC-CCHHHHHHHHHHHhcCCCccccccCCCChhHHHHHHHHhcCCCc
Q 024886 48 KAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLN-VDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTN 126 (261)
Q Consensus 48 ~~~k~iifD~DGTL~d~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (261)
|++++|+||+||||+|+...+..++.+++++++.. .+.+..... .+... ...+.. ......
T Consensus 1 m~~~~viFD~DGTL~ds~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~G~~~----------~~~~~~----~~~~~~ 62 (214)
T PRK13288 1 MKINTVLFDLDGTLINTNELIISSFLHTLKTYYPNQYKREDVLPF----IGPSL----------HDTFSK----IDESKV 62 (214)
T ss_pred CCccEEEEeCCCcCccCHHHHHHHHHHHHHHhCCCCCCHHHHHHH----hCcCH----------HHHHHh----cCHHHH
Confidence 36899999999999999999999999999998764 454444332 22111 111111 111112
Q ss_pred hHHHHHHHHHHhh--CCceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHH
Q 024886 127 DDYFEEVYEYYAK--GEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPR 203 (261)
Q Consensus 127 ~~~~~~~~~~~~~--~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~ 203 (261)
+.+...+.+.+.. .....++||+.++|+.|+++|++++|+||+... +...++.+|+..+|+.++++++.+..||+|+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~ 142 (214)
T PRK13288 63 EEMITTYREFNHEHHDELVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDEFFDVVITLDDVEHAKPDPE 142 (214)
T ss_pred HHHHHHHHHHHHHhhhhhcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhceeEEEecCcCCCCCCCcH
Confidence 2222333332222 123578999999999999999999999998877 7899999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCChHHH
Q 024886 204 IFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFSDV 253 (261)
Q Consensus 204 ~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~el 253 (261)
.|..+++++|++|+++++|||+ .+|+++|+++|+.++++..+.....++
T Consensus 143 ~~~~~~~~~~~~~~~~~~iGDs-~~Di~aa~~aG~~~i~v~~g~~~~~~l 191 (214)
T PRK13288 143 PVLKALELLGAKPEEALMVGDN-HHDILAGKNAGTKTAGVAWTIKGREYL 191 (214)
T ss_pred HHHHHHHHcCCCHHHEEEECCC-HHHHHHHHHCCCeEEEEcCCCCCHHHH
Confidence 9999999999999999999999 799999999999999987775544444
No 2
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.97 E-value=1.2e-29 Score=198.76 Aligned_cols=192 Identities=40% Similarity=0.703 Sum_probs=142.9
Q ss_pred cEEEEccCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC---CCcccccc-CCCChhHHHHHHHHhcC---
Q 024886 51 DAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAA---PWPEKLRY-EGDGRPFWRLVVSEATG--- 123 (261)
Q Consensus 51 k~iifD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~--- 123 (261)
|+|+||+||||+|+...+..++.++++++|++.+.++....+...+.. .+...... ......++...+.....
T Consensus 1 k~viFDlDGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 80 (203)
T TIGR02252 1 KLITFDAVGTLLALKEPVGEVYCEIARKYGVEVSPDELEQAFRRAFKAMSEAFPNFGFSSGLTPQQWWQKLVRDTFGRAG 80 (203)
T ss_pred CeEEEecCCceeeeCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 579999999999999999999999999999987765544333222211 11111101 11122233333322211
Q ss_pred -CC---chHHHHHHHHHHhhCCceeeCccHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCcccccceEEecCCCCCCC
Q 024886 124 -CT---NDDYFEEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEK 199 (261)
Q Consensus 124 -~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~K 199 (261)
.. ..+....+.+.+.....+.++||+.++|+.|++.|++++|+||++..+...++.+|+..+|+.++++++.+..|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~~~~~l~~~~l~~~fd~i~~s~~~~~~K 160 (203)
T TIGR02252 81 VPDPESFEKIFEELYSYFATPEPWQVYPDAIKLLKDLRERGLILGVISNFDSRLRGLLEALGLLEYFDFVVTSYEVGAEK 160 (203)
T ss_pred CCCchhHHHHHHHHHHHhcCCCcceeCcCHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHCCcHHhcceEEeecccCCCC
Confidence 11 12333444444444444688999999999999999999999998876778899999999999999999999999
Q ss_pred CCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEE
Q 024886 200 PDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWL 242 (261)
Q Consensus 200 p~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~ 242 (261)
|+|++|..+++++|++|+++++|||+..+|+++|+++|+.+|+
T Consensus 161 P~~~~~~~~~~~~~~~~~~~~~IgD~~~~Di~~A~~aG~~~i~ 203 (203)
T TIGR02252 161 PDPKIFQEALERAGISPEEALHIGDSLRNDYQGARAAGWRALL 203 (203)
T ss_pred CCHHHHHHHHHHcCCChhHEEEECCCchHHHHHHHHcCCeeeC
Confidence 9999999999999999999999999944899999999999874
No 3
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.97 E-value=2.3e-29 Score=200.44 Aligned_cols=183 Identities=22% Similarity=0.231 Sum_probs=139.2
Q ss_pred cccEEEEccCCccccccccHHHHHHHHHHHhCCC-CCHHHHHHHHHHHhcCCCccccccCCCChhHHHHHHHHhcCCCch
Q 024886 49 AYDAVLLDAGGTLLQLAEPVEETYASIARKYGLN-VDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTND 127 (261)
Q Consensus 49 ~~k~iifD~DGTL~d~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (261)
++++|+||+||||+|+...+..++..+++++|.+ .+.+.....+.... ................+
T Consensus 11 ~~k~viFD~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~--------------~~~~~~~~~~~~~~~~~ 76 (229)
T PRK13226 11 FPRAVLFDLDGTLLDSAPDMLATVNAMLAARGRAPITLAQLRPVVSKGA--------------RAMLAVAFPELDAAARD 76 (229)
T ss_pred cCCEEEEcCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhhhHH--------------HHHHHHHhccCChHHHH
Confidence 5689999999999999999999999999999986 45444332221110 00111100000000112
Q ss_pred HHHHHHHHHHhhC--CceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHHH
Q 024886 128 DYFEEVYEYYAKG--EAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRI 204 (261)
Q Consensus 128 ~~~~~~~~~~~~~--~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~ 204 (261)
++...+.+.|... ...+++||+.++|+.|+++|++++|+||+... ...+++.+|+..+|+.++++++.+..||+|++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~ 156 (229)
T PRK13226 77 ALIPEFLQRYEALIGTQSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQRCAVLIGGDTLAERKPHPLP 156 (229)
T ss_pred HHHHHHHHHHHHhhhhcCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchhcccEEEecCcCCCCCCCHHH
Confidence 3333334444321 22588999999999999999999999998877 67889999999999999999888889999999
Q ss_pred HHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCC
Q 024886 205 FKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGID 246 (261)
Q Consensus 205 ~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~ 246 (261)
|..+++++|++|++|++|||+ .+|+++|+++|+.++++..+
T Consensus 157 ~~~~~~~l~~~p~~~l~IGDs-~~Di~aA~~aG~~~i~v~~g 197 (229)
T PRK13226 157 LLVAAERIGVAPTDCVYVGDD-ERDILAARAAGMPSVAALWG 197 (229)
T ss_pred HHHHHHHhCCChhhEEEeCCC-HHHHHHHHHCCCcEEEEeec
Confidence 999999999999999999999 89999999999999887554
No 4
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.97 E-value=4.3e-29 Score=201.06 Aligned_cols=185 Identities=18% Similarity=0.228 Sum_probs=139.2
Q ss_pred cccccEEEEccCCccccccccHHHHHHHHHHHhCC----CCCHHHHHHHHHHHhcCCCccccccCCCChhHHHHHHHHhc
Q 024886 47 KKAYDAVLLDAGGTLLQLAEPVEETYASIARKYGL----NVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEAT 122 (261)
Q Consensus 47 ~~~~k~iifD~DGTL~d~~~~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (261)
..++++|+||+||||+|+...+..+|.++++++|. +++.+.... ...+... ...+........
T Consensus 19 ~~~~k~viFDlDGTLiDs~~~~~~a~~~~~~~~g~~~g~~~~~~~~~~---~~~G~~~----------~~~~~~~~~~~~ 85 (248)
T PLN02770 19 LAPLEAVLFDVDGTLCDSDPLHYYAFREMLQEINFNGGVPITEEFFVE---NIAGKHN----------EDIALGLFPDDL 85 (248)
T ss_pred cCccCEEEEcCCCccCcCHHHHHHHHHHHHHHhccccCCCCCHHHHHH---HcCCCCH----------HHHHHHHcCcch
Confidence 45689999999999999999999999999999864 333332221 1111111 111111110000
Q ss_pred CCCchHHHHHHHHHHhh--CCceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCC
Q 024886 123 GCTNDDYFEEVYEYYAK--GEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEK 199 (261)
Q Consensus 123 ~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~K 199 (261)
. ...++.....+.|.. .....++||+.++|+.|+++|++++|+||+... +...++.+|+.++|+.++++++++.+|
T Consensus 86 ~-~~~~~~~~~~~~y~~~~~~~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~iv~~~~~~~~K 164 (248)
T PLN02770 86 E-RGLKFTDDKEALFRKLASEQLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSDFFQAVIIGSECEHAK 164 (248)
T ss_pred h-hHHHHHHHHHHHHHHHHHhcCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChhhCcEEEecCcCCCCC
Confidence 0 001112222223322 123588999999999999999999999999877 799999999999999999999999999
Q ss_pred CCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCC
Q 024886 200 PDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGID 246 (261)
Q Consensus 200 p~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~ 246 (261)
|+|+.|..+++++|++|++|++|||+ ..|+++|+++|+.++++..+
T Consensus 165 P~p~~~~~a~~~~~~~~~~~l~vgDs-~~Di~aA~~aGi~~i~v~~g 210 (248)
T PLN02770 165 PHPDPYLKALEVLKVSKDHTFVFEDS-VSGIKAGVAAGMPVVGLTTR 210 (248)
T ss_pred CChHHHHHHHHHhCCChhHEEEEcCC-HHHHHHHHHCCCEEEEEeCC
Confidence 99999999999999999999999999 79999999999999999765
No 5
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.97 E-value=7.4e-29 Score=200.69 Aligned_cols=193 Identities=13% Similarity=0.167 Sum_probs=139.3
Q ss_pred ccEEEEccCCcccccccc-HHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCccccccCCCChhHHHHHHHHhcCCC-ch
Q 024886 50 YDAVLLDAGGTLLQLAEP-VEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCT-ND 127 (261)
Q Consensus 50 ~k~iifD~DGTL~d~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 127 (261)
+++|+||+||||+|+... +..++.++++++|.+++.++.... .+......+............+. ...+.. ..
T Consensus 2 ~k~viFD~DGTLiDs~~~~~~~a~~~~~~~~g~~~~~~~~~~~----~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 76 (253)
T TIGR01422 2 IEAVIFDWAGTTVDFGSFAPTQAFVEAFAEFGVQITLEEARGP----MGLGKWDHIRALLKMPAVAERWR-AKFGRLPTE 76 (253)
T ss_pred ceEEEEeCCCCeecCCCccHHHHHHHHHHHcCCCccHHHHHHh----cCccHHHHHHHHhcCHHHHHHHH-HHhCCCCCH
Confidence 689999999999998653 577999999999987766654322 22111111111000111111111 111111 11
Q ss_pred ----HHHHHHHHHHhh--CCceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCccccc-ceEEecCCCCCCC
Q 024886 128 ----DYFEEVYEYYAK--GEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLF-DAVVISSEVGCEK 199 (261)
Q Consensus 128 ----~~~~~~~~~~~~--~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f-~~i~~~~~~~~~K 199 (261)
.+...+.+.+.. .....++||+.++|+.|+++|++++|+||++.. ++.+++.+|+..+| +.++++++++..|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~~f~d~ii~~~~~~~~K 156 (253)
T TIGR01422 77 ADIEAIYEAFEPLQLAKLAEYSSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQGYRPDYNVTTDDVPAGR 156 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcCCCCceEEccccCCCCC
Confidence 122222222211 123588999999999999999999999999877 78899999999885 9999999999999
Q ss_pred CCHHHHHHHHHHcCCC-CCcEEEEcCCchhhhHHHHhCCCeEEEECCCCC
Q 024886 200 PDPRIFKAALDQMSVE-ASRTVHIGDDEKADKQGANSLGIDCWLWGIDVK 248 (261)
Q Consensus 200 p~~~~~~~~~~~l~~~-~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~ 248 (261)
|+|++|..+++++|+. |++|++|||+ .+|+++|+++|+.+|+|..+..
T Consensus 157 P~p~~~~~a~~~l~~~~~~~~l~IGDs-~~Di~aA~~aGi~~i~v~~g~~ 205 (253)
T TIGR01422 157 PAPWMALKNAIELGVYDVAACVKVGDT-VPDIEEGRNAGMWTVGLILSSN 205 (253)
T ss_pred CCHHHHHHHHHHcCCCCchheEEECCc-HHHHHHHHHCCCeEEEEecCCc
Confidence 9999999999999995 9999999999 7999999999999999977754
No 6
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.97 E-value=3.7e-29 Score=197.89 Aligned_cols=185 Identities=26% Similarity=0.347 Sum_probs=141.9
Q ss_pred ccccEEEEccCCccccccccHHHHHHHHHHHhCCC-CCHHHHHHHHHHHhcCCCccccccCCCChhHHHHHHHHhcCC--
Q 024886 48 KAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLN-VDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGC-- 124 (261)
Q Consensus 48 ~~~k~iifD~DGTL~d~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 124 (261)
|++++|+||+||||+|+...+..+++..++++|.+ .+.+.+...+..... .............
T Consensus 2 ~~~~~iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~--------------~~~~~~~~~~~~~~~ 67 (220)
T COG0546 2 MMIKAILFDLDGTLVDSAEDILRAFNAALAELGLPPLDEEEIRQLIGLGLD--------------ELIERLLGEADEEAA 67 (220)
T ss_pred CCCCEEEEeCCCccccChHHHHHHHHHHHHHcCCCCCCHHHHHHHhcCCHH--------------HHHHHHhccccchhH
Confidence 57899999999999999999999999999999998 566555443221111 0001000000000
Q ss_pred --CchHHHHHHHHHHhhCCceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCC
Q 024886 125 --TNDDYFEEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPD 201 (261)
Q Consensus 125 --~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~ 201 (261)
..+.+.+...+.+.......++||+.++|..|++.|++++|+||.+.. ++..++.+|+..+|+.+++.++....||+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~~F~~i~g~~~~~~~KP~ 147 (220)
T COG0546 68 AELVERLREEFLTAYAELLESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLADYFDVIVGGDDVPPPKPD 147 (220)
T ss_pred HHHHHHHHHHHHHHHHhhccCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCccccceEEcCCCCCCCCcC
Confidence 011222222222322212378999999999999999999999998877 79999999999999999998888899999
Q ss_pred HHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCC
Q 024886 202 PRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDV 247 (261)
Q Consensus 202 ~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~ 247 (261)
|..+..+++.+|++|++++||||+ .+|+++|+++|+.+++|..+.
T Consensus 148 P~~l~~~~~~~~~~~~~~l~VGDs-~~Di~aA~~Ag~~~v~v~~g~ 192 (220)
T COG0546 148 PEPLLLLLEKLGLDPEEALMVGDS-LNDILAAKAAGVPAVGVTWGY 192 (220)
T ss_pred HHHHHHHHHHhCCChhheEEECCC-HHHHHHHHHcCCCEEEEECCC
Confidence 999999999999998899999999 899999999999998887763
No 7
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.97 E-value=5.9e-29 Score=197.28 Aligned_cols=189 Identities=21% Similarity=0.282 Sum_probs=145.0
Q ss_pred ccEEEEccCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCccccccCCCChhHHHHHHHHhcCCC---c
Q 024886 50 YDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCT---N 126 (261)
Q Consensus 50 ~k~iifD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 126 (261)
+|+|+||+||||+|+...+..++.++++++|.+.+..+....+ .+. .....++..... .+.. .
T Consensus 1 ~k~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~g~----------~~~~~~~~~~~~-~~~~~~~~ 66 (220)
T TIGR03351 1 ISLVVLDMAGTTVDEDGLVYRALRQAVTAAGLSPTPEEVQSAW---MGQ----------SKIEAIRALLAL-DGADEAEA 66 (220)
T ss_pred CcEEEEecCCCeeccCchHHHHHHHHHHHcCCCCCHHHHHHhh---cCC----------CHHHHHHHHHhc-cCCCHHHH
Confidence 5789999999999999999999999999999887665544311 111 112222222221 1111 1
Q ss_pred hHHHHHHHHHHhh---CCceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcc--cccceEEecCCCCCCCC
Q 024886 127 DDYFEEVYEYYAK---GEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVI--DLFDAVVISSEVGCEKP 200 (261)
Q Consensus 127 ~~~~~~~~~~~~~---~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~--~~f~~i~~~~~~~~~Kp 200 (261)
+.+...+.+.+.. .....++||+.++|+.|+++|++++|+||+... +..+++.+|+. .+|+.++++++.+..||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP 146 (220)
T TIGR03351 67 QAAFADFEERLAEAYDDGPPVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDAVVCPSDVAAGRP 146 (220)
T ss_pred HHHHHHHHHHHHHHhcccCCccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCCEEEcCCcCCCCCC
Confidence 2222333333322 122589999999999999999999999999877 79999999998 99999999999989999
Q ss_pred CHHHHHHHHHHcCCC-CCcEEEEcCCchhhhHHHHhCCCeE-EEECCCCCChHHH
Q 024886 201 DPRIFKAALDQMSVE-ASRTVHIGDDEKADKQGANSLGIDC-WLWGIDVKTFSDV 253 (261)
Q Consensus 201 ~~~~~~~~~~~l~~~-~~~~l~iGD~~~~Di~~a~~~G~~~-i~v~~~~~~~~el 253 (261)
+|++|..+++++|+. |++|++|||+ ..|+++|+++|+.+ +++.++..+.+++
T Consensus 147 ~p~~~~~a~~~~~~~~~~~~~~igD~-~~Di~aa~~aG~~~~i~~~~g~~~~~~~ 200 (220)
T TIGR03351 147 APDLILRAMELTGVQDVQSVAVAGDT-PNDLEAGINAGAGAVVGVLTGAHDAEEL 200 (220)
T ss_pred CHHHHHHHHHHcCCCChhHeEEeCCC-HHHHHHHHHCCCCeEEEEecCCCcHHHH
Confidence 999999999999997 7999999999 79999999999999 8887765544444
No 8
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.97 E-value=1.2e-28 Score=198.70 Aligned_cols=182 Identities=18% Similarity=0.265 Sum_probs=137.2
Q ss_pred cccEEEEccCCccccccc-cHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCccccccCCCChhHHHHHHHHhcCC-Cc
Q 024886 49 AYDAVLLDAGGTLLQLAE-PVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGC-TN 126 (261)
Q Consensus 49 ~~k~iifD~DGTL~d~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 126 (261)
.+|+|||||||||+|+.. .+..+|.++++++|..++.++... ...+... ...+..+....... ..
T Consensus 23 ~~k~vIFDlDGTLvDS~~~~~~~a~~~~~~~~G~~~~~~e~~~---~~~G~~~----------~~~~~~l~~~~~~~~~~ 89 (260)
T PLN03243 23 GWLGVVLEWEGVIVEDDSELERKAWRALAEEEGKRPPPAFLLK---RAEGMKN----------EQAISEVLCWSRDFLQM 89 (260)
T ss_pred CceEEEEeCCCceeCCchHHHHHHHHHHHHHcCCCCCHHHHHH---HhcCCCH----------HHHHHHHhccCCCHHHH
Confidence 589999999999999964 556799999999999876654332 1222111 11111111000000 01
Q ss_pred hHHHHHHHHHHh--hCCceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHH
Q 024886 127 DDYFEEVYEYYA--KGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPR 203 (261)
Q Consensus 127 ~~~~~~~~~~~~--~~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~ 203 (261)
..+.......+. ......++||+.++|+.|++.|++++|+||+... +..+++.+|+..+|+.++++++...+||+|+
T Consensus 90 ~~l~~~~~~~~~~~~~~~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe 169 (260)
T PLN03243 90 KRLAIRKEDLYEYMQGGLYRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEGFFSVVLAAEDVYRGKPDPE 169 (260)
T ss_pred HHHHHHHHHHHHHHHccCcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHhhCcEEEecccCCCCCCCHH
Confidence 122222222221 1123578999999999999999999999998877 7899999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEEC
Q 024886 204 IFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWG 244 (261)
Q Consensus 204 ~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~ 244 (261)
+|..+++++|++|++|++|||+ ..|+++|+++|+.++++.
T Consensus 170 ~~~~a~~~l~~~p~~~l~IgDs-~~Di~aA~~aG~~~i~v~ 209 (260)
T PLN03243 170 MFMYAAERLGFIPERCIVFGNS-NSSVEAAHDGCMKCVAVA 209 (260)
T ss_pred HHHHHHHHhCCChHHeEEEcCC-HHHHHHHHHcCCEEEEEe
Confidence 9999999999999999999999 899999999999999885
No 9
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.97 E-value=1.1e-28 Score=195.87 Aligned_cols=193 Identities=25% Similarity=0.316 Sum_probs=139.5
Q ss_pred ccEEEEccCCccccccccHHHHHHHH---HHHhCCCCCHHHHHHHHHHHhcCCCccccccCCCChhHHHHHHHHhcCCCc
Q 024886 50 YDAVLLDAGGTLLQLAEPVEETYASI---ARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTN 126 (261)
Q Consensus 50 ~k~iifD~DGTL~d~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (261)
+++|+||+||||+|+...+..++..+ +.++|.+++.++....+........... .............. ...
T Consensus 2 ~~~viFDlDGTL~ds~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~ 75 (221)
T TIGR02253 2 IKAIFFDLDDTLIDTSGLAEKARRNAIEVLIEAGLNVDFEEAYEELLKLIKEYGSNY---PTHFDYLIRRLWEE---YNP 75 (221)
T ss_pred ceEEEEeCCCCCcCCCCccCHHHHHHHHHHHHCCCcCCHHHHHHHHHHHHHHhcccc---CcchHHHHHHHhhh---cCH
Confidence 68999999999999998877776655 4566777777666554443222111000 00001111111110 111
Q ss_pred hHHHHHHHHHHhh-CCceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHHH
Q 024886 127 DDYFEEVYEYYAK-GEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRI 204 (261)
Q Consensus 127 ~~~~~~~~~~~~~-~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~ 204 (261)
....+.....+.. .....++||+.++|+.|+++|++++|+||+... +...++.+|+..+|+.++++++.+..||+|++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~ 155 (221)
T TIGR02253 76 KLVAAFVYAYHKLKFAYLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRDFFDAVITSEEEGVEKPHPKI 155 (221)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHHhccEEEEeccCCCCCCCHHH
Confidence 1111112121111 122478999999999999999999999999876 78899999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCC
Q 024886 205 FKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVK 248 (261)
Q Consensus 205 ~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~ 248 (261)
|..+++++|++++++++|||+..+|+++|+++|+.+|++.++..
T Consensus 156 ~~~~~~~~~~~~~~~~~igDs~~~di~~A~~aG~~~i~~~~~~~ 199 (221)
T TIGR02253 156 FYAALKRLGVKPEEAVMVGDRLDKDIKGAKNLGMKTVWINQGKS 199 (221)
T ss_pred HHHHHHHcCCChhhEEEECCChHHHHHHHHHCCCEEEEECCCCC
Confidence 99999999999999999999943899999999999999987754
No 10
>PRK09449 dUMP phosphatase; Provisional
Probab=99.97 E-value=2.6e-28 Score=194.13 Aligned_cols=192 Identities=25% Similarity=0.332 Sum_probs=135.5
Q ss_pred ccccEEEEccCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCccccccCCCChhHHHH---HHHHhcCC
Q 024886 48 KAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRL---VVSEATGC 124 (261)
Q Consensus 48 ~~~k~iifD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 124 (261)
|++|+|+||+||||+|.. ...++.++++++|...+.+.... +.......+............+... ......+.
T Consensus 1 m~~k~iiFDlDGTLid~~--~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (224)
T PRK09449 1 MKYDWILFDADETLFHFD--AFAGLQRMFSRYGVDFTAEDFQD-YQAVNKPLWVDYQNGAITALQLQHTRFESWAEKLNV 77 (224)
T ss_pred CCccEEEEcCCCchhcch--hhHHHHHHHHHhCCCCcHHHHHH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC
Confidence 368999999999999843 35678888889998765544322 1111000011110000111111111 11222233
Q ss_pred CchHHHHHHHHHHhhCCceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHH
Q 024886 125 TNDDYFEEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPR 203 (261)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~ 203 (261)
...++...+.+.+... ..++||+.++|+.|+ +|++++|+||+... +...++.+|+..+|+.++++++.+..||+|+
T Consensus 78 ~~~~~~~~~~~~~~~~--~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~ 154 (224)
T PRK09449 78 TPGELNSAFLNAMAEI--CTPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLERTGLRDYFDLLVISEQVGVAKPDVA 154 (224)
T ss_pred CHHHHHHHHHHHHhhc--CccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHhCChHHHcCEEEEECccCCCCCCHH
Confidence 3334444444444332 478999999999999 57999999998877 6888999999999999999999999999999
Q ss_pred HHHHHHHHcCCC-CCcEEEEcCCchhhhHHHHhCCCeEEEECC
Q 024886 204 IFKAALDQMSVE-ASRTVHIGDDEKADKQGANSLGIDCWLWGI 245 (261)
Q Consensus 204 ~~~~~~~~l~~~-~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~ 245 (261)
+|..+++++|+. +++|++|||+..+|+++|+++|+.++++..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~vgD~~~~Di~~A~~aG~~~i~~~~ 197 (224)
T PRK09449 155 IFDYALEQMGNPDRSRVLMVGDNLHSDILGGINAGIDTCWLNA 197 (224)
T ss_pred HHHHHHHHcCCCCcccEEEEcCCcHHHHHHHHHCCCcEEEECC
Confidence 999999999985 479999999933799999999999999874
No 11
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.96 E-value=1e-28 Score=191.76 Aligned_cols=210 Identities=38% Similarity=0.569 Sum_probs=173.2
Q ss_pred cccccEEEEccCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC---CCccccccCC--CChhHHHHHHHHh
Q 024886 47 KKAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAA---PWPEKLRYEG--DGRPFWRLVVSEA 121 (261)
Q Consensus 47 ~~~~k~iifD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~ 121 (261)
.+.+++|+||++|||+.........|.++.+.+|++.+.......+...+.. ....+..+.+ ...++|..++...
T Consensus 4 ~~~iravtfD~~~tLl~~~~~~~~~y~~i~~~~gl~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~l~~~~ww~~lv~~~ 83 (237)
T KOG3085|consen 4 LMRIRAVTFDAGGTLLATLPPVMEVYCEIAEAYGLEYDDSLIETIFRKDFKKMSEKGPFFGLYSGELTLSQWWPKLVEST 83 (237)
T ss_pred ccceEEEEEeCCCceeecCCccHHHHHHHHHHhCCCCCHHHHhHhhhHHHHhhcccCCcccccCCcccHHHHHHHHHHHH
Confidence 4578999999999999988888899999999999997777666666665542 2223333333 6778888777777
Q ss_pred cCCCchHHHHHHHHH-----HhhC--CceeeCccHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCcccccceEEecCC
Q 024886 122 TGCTNDDYFEEVYEY-----YAKG--EAWHLPHGAYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSE 194 (261)
Q Consensus 122 ~~~~~~~~~~~~~~~-----~~~~--~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~~~~~l~~~gl~~~f~~i~~~~~ 194 (261)
......+..+...++ |... ..+.+.+++.++++.||+.|..++++||.+...+..+...|+..+||.++.|.+
T Consensus 84 f~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~lq~lR~~g~~l~iisN~d~r~~~~l~~~~l~~~fD~vv~S~e 163 (237)
T KOG3085|consen 84 FGKAGIDYEEELLENFSFRLFSTFAPSAWKYLDGMQELLQKLRKKGTILGIISNFDDRLRLLLLPLGLSAYFDFVVESCE 163 (237)
T ss_pred hccccchhHHHHHhhhhhheeccccccCceeccHHHHHHHHHHhCCeEEEEecCCcHHHHHHhhccCHHHhhhhhhhhhh
Confidence 776555555555532 2222 357888899999999999999999999999988899999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCChHHHHHh
Q 024886 195 VGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFSDVQNR 256 (261)
Q Consensus 195 ~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~~ 256 (261)
.+.-||+|.+|+.+++++++.|++|++|||++.||+++|+++||.+++|.+......++...
T Consensus 164 ~g~~KPDp~If~~al~~l~v~Pee~vhIgD~l~nD~~gA~~~G~~ailv~~~~~~~~~~~~~ 225 (237)
T KOG3085|consen 164 VGLEKPDPRIFQLALERLGVKPEECVHIGDLLENDYEGARNLGWHAILVDNSITALKELEYK 225 (237)
T ss_pred hccCCCChHHHHHHHHHhCCChHHeEEecCccccccHhHHHcCCEEEEEccccchhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999887766665543
No 12
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.96 E-value=2.1e-28 Score=199.44 Aligned_cols=196 Identities=12% Similarity=0.121 Sum_probs=139.0
Q ss_pred cccccEEEEccCCcccccccc-HHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCccccccCCCChhHHHHHHHHhcCCC
Q 024886 47 KKAYDAVLLDAGGTLLQLAEP-VEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCT 125 (261)
Q Consensus 47 ~~~~k~iifD~DGTL~d~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (261)
||++|+|+||+||||+|+... ...+|.++++++|.+++.++.... .+......+............+ ....+..
T Consensus 1 ~~~~k~vIFDlDGTLiDs~~~~~~~a~~~~~~~~g~~~~~~~~~~~----~G~~~~~~~~~~~~~~~~~~~~-~~~~g~~ 75 (267)
T PRK13478 1 MMKIQAVIFDWAGTTVDFGSFAPTQAFVEAFAQFGVEITLEEARGP----MGLGKWDHIRALLKMPRVAARW-QAVFGRL 75 (267)
T ss_pred CCceEEEEEcCCCCeecCCCccHHHHHHHHHHHcCCCCCHHHHHHh----cCCCHHHHHHHHHhcHHHHHHH-HHHhCCC
Confidence 467899999999999998654 367999999999987765543321 2211101000000000011111 1112211
Q ss_pred -c----hHHHHHHHHHHhh--CCceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCccccc-ceEEecCCCC
Q 024886 126 -N----DDYFEEVYEYYAK--GEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLF-DAVVISSEVG 196 (261)
Q Consensus 126 -~----~~~~~~~~~~~~~--~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f-~~i~~~~~~~ 196 (261)
. .++...+.+.+.. .....++||+.++|+.|+++|++++|+||.... +..+++.+++..+| +.++++++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~~~~d~i~~~~~~~ 155 (267)
T PRK13478 76 PTEADVDALYAAFEPLQIAKLADYATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQGYRPDHVVTTDDVP 155 (267)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcCCCceEEEcCCcCC
Confidence 1 1222222222221 123578999999999999999999999998887 68889988887774 8999999999
Q ss_pred CCCCCHHHHHHHHHHcCCC-CCcEEEEcCCchhhhHHHHhCCCeEEEECCCCC
Q 024886 197 CEKPDPRIFKAALDQMSVE-ASRTVHIGDDEKADKQGANSLGIDCWLWGIDVK 248 (261)
Q Consensus 197 ~~Kp~~~~~~~~~~~l~~~-~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~ 248 (261)
..||+|++|..+++++|+. +++|++|||+ .+|+++|+++|+.+|+|..+..
T Consensus 156 ~~KP~p~~~~~a~~~l~~~~~~e~l~IGDs-~~Di~aA~~aG~~~i~v~~g~~ 207 (267)
T PRK13478 156 AGRPYPWMALKNAIELGVYDVAACVKVDDT-VPGIEEGLNAGMWTVGVILSGN 207 (267)
T ss_pred CCCCChHHHHHHHHHcCCCCCcceEEEcCc-HHHHHHHHHCCCEEEEEccCcc
Confidence 9999999999999999996 6999999999 7999999999999999987754
No 13
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.96 E-value=2.4e-28 Score=194.02 Aligned_cols=186 Identities=15% Similarity=0.229 Sum_probs=142.8
Q ss_pred ccccEEEEccCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCccccccCCCChhHHHHHHHHhc--CCC
Q 024886 48 KAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEAT--GCT 125 (261)
Q Consensus 48 ~~~k~iifD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 125 (261)
+++++|+||+||||+|+...+..++.++++++|.+.+...... ...+.. .......+..... ...
T Consensus 5 ~~~k~iiFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~---~~~g~~----------~~~~~~~~~~~~~~~~~~ 71 (222)
T PRK10826 5 RQILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRREELP---DTLGLR----------IDQVVDLWYARQPWNGPS 71 (222)
T ss_pred ccCcEEEEcCCCCCCcCHHHHHHHHHHHHHHCCCCCCHHHHHH---HhhCCC----------HHHHHHHHHHhcCCCCCC
Confidence 3589999999999999999999999999999998766522221 111110 0111111111111 112
Q ss_pred chHHHHHHHHHHhh--CCceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCH
Q 024886 126 NDDYFEEVYEYYAK--GEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDP 202 (261)
Q Consensus 126 ~~~~~~~~~~~~~~--~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~ 202 (261)
...+.....+.+.+ .....++||+.++|+.|+++|++++|+||+... +..+++.+|+..+|+.++++++.+.+||+|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~ 151 (222)
T PRK10826 72 RQEVVQRIIARVISLIEETRPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRDYFDALASAEKLPYSKPHP 151 (222)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchhcccEEEEcccCCCCCCCH
Confidence 22333333333322 123589999999999999999999999998877 789999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCC
Q 024886 203 RIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDV 247 (261)
Q Consensus 203 ~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~ 247 (261)
+.|..+++++|++|++|++|||+ .+|+++|+++|+.++++.++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~igDs-~~Di~aA~~aG~~~i~v~~~~ 195 (222)
T PRK10826 152 EVYLNCAAKLGVDPLTCVALEDS-FNGMIAAKAARMRSIVVPAPE 195 (222)
T ss_pred HHHHHHHHHcCCCHHHeEEEcCC-hhhHHHHHHcCCEEEEecCCc
Confidence 99999999999999999999999 799999999999999998764
No 14
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.96 E-value=1.8e-28 Score=193.62 Aligned_cols=183 Identities=22% Similarity=0.311 Sum_probs=143.8
Q ss_pred cccEEEEccCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCccccccCCCChhHHHHHHHHhcCCC--c
Q 024886 49 AYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCT--N 126 (261)
Q Consensus 49 ~~k~iifD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 126 (261)
+++++||||||||+|+...+.++|.++++++|+.++.+.....+... ....+........... .
T Consensus 1 ~~~avIFD~DGvLvDse~~~~~a~~~~~~~~g~~~~~~~~~~~~g~~--------------~~~~~~~~~~~~~~~~~~~ 66 (221)
T COG0637 1 MIKAVIFDMDGTLVDSEPLHARAWLEALKEYGIEISDEEIRELHGGG--------------IARIIDLLRKLAAGEDPAD 66 (221)
T ss_pred CCcEEEEcCCCCcCcchHHHHHHHHHHHHHcCCCCCHHHHHHHHCCC--------------hHHHHHHHHHHhcCCcccC
Confidence 46899999999999999999999999999999998876655432110 0111122222222211 1
Q ss_pred hHHHHHHHH-HH-hhCCceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHH
Q 024886 127 DDYFEEVYE-YY-AKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPR 203 (261)
Q Consensus 127 ~~~~~~~~~-~~-~~~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~ 203 (261)
....+.... .. ......+++||+.++|+.|+++|+++++.|+++.. +...++.+|+.++|+.+++++++..+||+|+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~~f~~~v~~~dv~~~KP~Pd 146 (221)
T COG0637 67 LAELERLLYEAEALELEGLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLDYFDVIVTADDVARGKPAPD 146 (221)
T ss_pred HHHHHHHHHHHHHhhhcCCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChhhcchhccHHHHhcCCCCCH
Confidence 111222111 11 22334689999999999999999999999998877 7999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCC
Q 024886 204 IFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGID 246 (261)
Q Consensus 204 ~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~ 246 (261)
.|..+++++|++|++|++|+|+ .+++++|+++||.+|.+.++
T Consensus 147 ~yL~Aa~~Lgv~P~~CvviEDs-~~Gi~Aa~aAGm~vv~v~~~ 188 (221)
T COG0637 147 IYLLAAERLGVDPEECVVVEDS-PAGIQAAKAAGMRVVGVPAG 188 (221)
T ss_pred HHHHHHHHcCCChHHeEEEecc-hhHHHHHHHCCCEEEEecCC
Confidence 9999999999999999999999 89999999999999999873
No 15
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.96 E-value=1.4e-28 Score=205.14 Aligned_cols=184 Identities=15% Similarity=0.222 Sum_probs=140.8
Q ss_pred cccEEEEccCCccccccc-cHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCccccccCCCChhHHHHHHHHhc-CCCc
Q 024886 49 AYDAVLLDAGGTLLQLAE-PVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEAT-GCTN 126 (261)
Q Consensus 49 ~~k~iifD~DGTL~d~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 126 (261)
..++|||||||||+|+.. .+..+|.++++++|.+.+..+... ...+... ...+..+..... ....
T Consensus 130 ~~~~VIFDlDGTLIDS~~~i~~~a~~~l~~e~G~~~~~~e~~~---~~~G~~~----------~~~l~~ll~~~~~~~~~ 196 (381)
T PLN02575 130 GWLGAIFEWEGVIIEDNPDLENQAWLTLAQEEGKSPPPAFILR---RVEGMKN----------EQAISEVLCWSRDPAEL 196 (381)
T ss_pred CCCEEEEcCcCcceeCHHHHHHHHHHHHHHHcCCCCCHHHHHH---HhcCCCH----------HHHHHHHhhccCCHHHH
Confidence 579999999999999876 455699999999998876554332 2222111 111122111000 0011
Q ss_pred hHHHHHHHHHHhhC--CceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHH
Q 024886 127 DDYFEEVYEYYAKG--EAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPR 203 (261)
Q Consensus 127 ~~~~~~~~~~~~~~--~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~ 203 (261)
+.+.....+.|.+. ....++||+.++|+.|+++|++++|+||.... +..+++.+|+..+|+.++++++....||+|+
T Consensus 197 e~l~~~~~~~y~~~~~~~~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~yFd~Iv~sddv~~~KP~Pe 276 (381)
T PLN02575 197 RRMATRKEEIYQALQGGIYRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRGFFSVIVAAEDVYRGKPDPE 276 (381)
T ss_pred HHHHHHHHHHHHHHhccCCCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHHHceEEEecCcCCCCCCCHH
Confidence 22333333333321 22578999999999999999999999999877 7999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCC
Q 024886 204 IFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGID 246 (261)
Q Consensus 204 ~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~ 246 (261)
+|..+++++|++|++|++|||+ ..|+++|+++|+.+|++..+
T Consensus 277 ifl~A~~~lgl~Peecl~IGDS-~~DIeAAk~AGm~~IgV~~~ 318 (381)
T PLN02575 277 MFIYAAQLLNFIPERCIVFGNS-NQTVEAAHDARMKCVAVASK 318 (381)
T ss_pred HHHHHHHHcCCCcccEEEEcCC-HHHHHHHHHcCCEEEEECCC
Confidence 9999999999999999999999 79999999999999999764
No 16
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.96 E-value=1.2e-28 Score=192.36 Aligned_cols=115 Identities=23% Similarity=0.344 Sum_probs=103.8
Q ss_pred HHHHHHHHHhhCCceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHH
Q 024886 129 YFEEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKA 207 (261)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~ 207 (261)
..+.+.+.+.. ..++||+.++|+.|+++|++++|+||++.. +...++.+|+..+|+.++++++++..||++++|..
T Consensus 80 ~~~~~~~~~~~---~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~ 156 (198)
T TIGR01428 80 AADRLAEAYLR---LPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLDDPFDAVLSADAVRAYKPAPQVYQL 156 (198)
T ss_pred HHHHHHHHHhc---CCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChhhhheeEehhhcCCCCCCHHHHHH
Confidence 34445555543 478999999999999999999999999877 78899999999999999999999999999999999
Q ss_pred HHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCC
Q 024886 208 ALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDV 247 (261)
Q Consensus 208 ~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~ 247 (261)
+++++|++|+++++|||+ ..|+++|+++|+.++++.++.
T Consensus 157 ~~~~~~~~p~~~~~vgD~-~~Di~~A~~~G~~~i~v~r~~ 195 (198)
T TIGR01428 157 ALEALGVPPDEVLFVASN-PWDLGGAKKFGFKTAWVNRPG 195 (198)
T ss_pred HHHHhCCChhhEEEEeCC-HHHHHHHHHCCCcEEEecCCC
Confidence 999999999999999999 699999999999999998754
No 17
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.96 E-value=7.8e-28 Score=189.95 Aligned_cols=181 Identities=21% Similarity=0.240 Sum_probs=138.0
Q ss_pred EEEccCCccccccccHHHHHHHHHHHhCCC-CCHHHHHHHHHHHhcCCCccccccCCCChhHHHHHHHHhcC-CC---ch
Q 024886 53 VLLDAGGTLLQLAEPVEETYASIARKYGLN-VDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATG-CT---ND 127 (261)
Q Consensus 53 iifD~DGTL~d~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~ 127 (261)
|+||+||||+|+...+..++..+++++|.+ .+.+.....+ +... ...+......... .. ..
T Consensus 1 viFD~DGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~----------~~~~~~~~~~~~~~~~~~~~~ 66 (213)
T TIGR01449 1 VLFDLDGTLVDSAPDIAAAVNMALAALGLPPATLARVIGFI----GNGV----------PVLMERVLAWAGQEPDAQRVA 66 (213)
T ss_pred CeecCCCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHh----cccH----------HHHHHHHhhccccccChHHHH
Confidence 689999999999888889999999999986 4444333211 1110 1111222111111 11 12
Q ss_pred HHHHHHHHHHhhC--CceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHHH
Q 024886 128 DYFEEVYEYYAKG--EAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRI 204 (261)
Q Consensus 128 ~~~~~~~~~~~~~--~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~ 204 (261)
++.....+.|... ....++||+.++|+.|+++|++++|+||+... +..+++.+|+..+|+.++++++.+..||+|+.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~ 146 (213)
T TIGR01449 67 ELRKLFDRHYEEVAGELTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAKYFSVLIGGDSLAQRKPHPDP 146 (213)
T ss_pred HHHHHHHHHHHHhccccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHhhCcEEEecCCCCCCCCChHH
Confidence 2233333344332 12578999999999999999999999998876 79999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCC
Q 024886 205 FKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVK 248 (261)
Q Consensus 205 ~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~ 248 (261)
|..+++++|++|+++++|||+ .+|+++|+++|+.++++..+..
T Consensus 147 ~~~~~~~~~~~~~~~~~igDs-~~d~~aa~~aG~~~i~v~~g~~ 189 (213)
T TIGR01449 147 LLLAAERLGVAPQQMVYVGDS-RVDIQAARAAGCPSVLLTYGYR 189 (213)
T ss_pred HHHHHHHcCCChhHeEEeCCC-HHHHHHHHHCCCeEEEEccCCC
Confidence 999999999999999999999 8999999999999999976644
No 18
>PRK11587 putative phosphatase; Provisional
Probab=99.96 E-value=7.6e-28 Score=190.48 Aligned_cols=180 Identities=16% Similarity=0.169 Sum_probs=133.8
Q ss_pred ccccEEEEccCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCccccccCCCChhHHHHHHHHhcCCCch
Q 024886 48 KAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTND 127 (261)
Q Consensus 48 ~~~k~iifD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (261)
|++++|+||+||||+|+...+..+|.++++++|.+. .+.... ..+... ...++.+.. +....
T Consensus 1 M~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~--~~~~~~---~~g~~~----------~~~~~~~~~---~~~~~ 62 (218)
T PRK11587 1 MRCKGFLFDLDGTLVDSLPAVERAWSNWADRHGIAP--DEVLNF---IHGKQA----------ITSLRHFMA---GASEA 62 (218)
T ss_pred CCCCEEEEcCCCCcCcCHHHHHHHHHHHHHHcCCCH--HHHHHH---HcCCCH----------HHHHHHHhc---cCCcH
Confidence 468999999999999999999999999999999753 222211 111111 111111110 11111
Q ss_pred HHHHHHHH--HHhh--CCceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCH
Q 024886 128 DYFEEVYE--YYAK--GEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDP 202 (261)
Q Consensus 128 ~~~~~~~~--~~~~--~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~ 202 (261)
.+.+.+.. .+.. .....++||+.++|+.|+++|++++|+||+... ....++..++ .+|+.++++++.+..||+|
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l-~~~~~i~~~~~~~~~KP~p 141 (218)
T PRK11587 63 EIQAEFTRLEQIEATDTEGITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGL-PAPEVFVTAERVKRGKPEP 141 (218)
T ss_pred HHHHHHHHHHHHHHhhhcCceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCC-CCccEEEEHHHhcCCCCCc
Confidence 22222211 1111 223589999999999999999999999998866 5777888888 4678888888888899999
Q ss_pred HHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCC
Q 024886 203 RIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDV 247 (261)
Q Consensus 203 ~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~ 247 (261)
+.|..+++.+|++|++|++|||+ ..|+++|+++|+.++++.++.
T Consensus 142 ~~~~~~~~~~g~~p~~~l~igDs-~~di~aA~~aG~~~i~v~~~~ 185 (218)
T PRK11587 142 DAYLLGAQLLGLAPQECVVVEDA-PAGVLSGLAAGCHVIAVNAPA 185 (218)
T ss_pred HHHHHHHHHcCCCcccEEEEecc-hhhhHHHHHCCCEEEEECCCC
Confidence 99999999999999999999999 899999999999999997653
No 19
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.96 E-value=5.3e-28 Score=187.24 Aligned_cols=181 Identities=19% Similarity=0.246 Sum_probs=136.8
Q ss_pred cccccEEEEccCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCccccccCCCChhHHHHHHHHhc-CCC
Q 024886 47 KKAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEAT-GCT 125 (261)
Q Consensus 47 ~~~~k~iifD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 125 (261)
|.++++|+||+||||+|+...+..++.++++++|.+.+.+.... ..+.. ....+..+..... ...
T Consensus 2 ~~~~~~viFD~DGTLiDs~~~~~~a~~~~~~~~g~~~~~~~~~~----~~g~~----------~~~~~~~~~~~~~~~~~ 67 (188)
T PRK10725 2 YDRYAGLIFDMDGTILDTEPTHRKAWREVLGRYGLQFDEQAMVA----LNGSP----------TWRIAQAIIELNQADLD 67 (188)
T ss_pred CCcceEEEEcCCCcCccCHHHHHHHHHHHHHHcCCCCCHHHHHH----hcCCC----------HHHHHHHHHHHhCCCCC
Confidence 44679999999999999999999999999999998765443222 11110 1122233322221 112
Q ss_pred chHHHHHHHHHHhh--CCceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCH
Q 024886 126 NDDYFEEVYEYYAK--GEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDP 202 (261)
Q Consensus 126 ~~~~~~~~~~~~~~--~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~ 202 (261)
.+.+.......+.. .....++|+ .++|+.|++. ++++|+||+... ++.+++.+|+..+|+.++++++.+..||+|
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~-~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p 145 (188)
T PRK10725 68 PHALAREKTEAVKSMLLDSVEPLPL-IEVVKAWHGR-RPMAVGTGSESAIAEALLAHLGLRRYFDAVVAADDVQHHKPAP 145 (188)
T ss_pred HHHHHHHHHHHHHHHHhccCCCccH-HHHHHHHHhC-CCEEEEcCCchHHHHHHHHhCCcHhHceEEEehhhccCCCCCh
Confidence 22332322222221 122467786 5899999876 899999998877 799999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEEC
Q 024886 203 RIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWG 244 (261)
Q Consensus 203 ~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~ 244 (261)
++|..+++++|++|++|++|||+ ..|+++|+++|+.+|++.
T Consensus 146 ~~~~~~~~~~~~~~~~~l~igDs-~~di~aA~~aG~~~i~~~ 186 (188)
T PRK10725 146 DTFLRCAQLMGVQPTQCVVFEDA-DFGIQAARAAGMDAVDVR 186 (188)
T ss_pred HHHHHHHHHcCCCHHHeEEEecc-HhhHHHHHHCCCEEEeec
Confidence 99999999999999999999998 899999999999999874
No 20
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.96 E-value=1e-27 Score=190.33 Aligned_cols=181 Identities=18% Similarity=0.268 Sum_probs=137.9
Q ss_pred ccccEEEEccCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCccccccCCCChhHHHHHHHHhcC-CCc
Q 024886 48 KAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATG-CTN 126 (261)
Q Consensus 48 ~~~k~iifD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 126 (261)
+++++|+||+||||+|+...+..+|.+++.++|.+++.++....+. + ......+..+...... ...
T Consensus 2 ~~~~~viFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~---g----------~~~~~~~~~~~~~~~~~~~~ 68 (221)
T PRK10563 2 SQIEAVFFDCDGTLVDSEVICSRAYVTMFAEFGITLSLEEVFKRFK---G----------VKLYEIIDIISKEHGVTLAK 68 (221)
T ss_pred CCCCEEEECCCCCCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHhc---C----------CCHHHHHHHHHHHhCCCCCH
Confidence 4689999999999999988888999999999998876654433221 1 1112333444333221 122
Q ss_pred hHHHHHHHHHHhh--CCceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccc-eEEecCCCCCCCCCH
Q 024886 127 DDYFEEVYEYYAK--GEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFD-AVVISSEVGCEKPDP 202 (261)
Q Consensus 127 ~~~~~~~~~~~~~--~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~-~i~~~~~~~~~Kp~~ 202 (261)
+++...+.+.+.. .....++||+.++|+.|+ ++++|+||++.. +...++.+|+.++|+ .++++++.+..||+|
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~L~~L~---~~~~ivTn~~~~~~~~~l~~~~l~~~F~~~v~~~~~~~~~KP~p 145 (221)
T PRK10563 69 AELEPVYRAEVARLFDSELEPIAGANALLESIT---VPMCVVSNGPVSKMQHSLGKTGMLHYFPDKLFSGYDIQRWKPDP 145 (221)
T ss_pred HHHHHHHHHHHHHHHHccCCcCCCHHHHHHHcC---CCEEEEeCCcHHHHHHHHHhcChHHhCcceEeeHHhcCCCCCCh
Confidence 3333333222211 123588999999999983 899999999877 788999999999996 677877888999999
Q ss_pred HHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECC
Q 024886 203 RIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGI 245 (261)
Q Consensus 203 ~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~ 245 (261)
+.|..+++++|++|++|++|||+ ..|+++|+++|+.++++..
T Consensus 146 ~~~~~a~~~~~~~p~~~l~igDs-~~di~aA~~aG~~~i~~~~ 187 (221)
T PRK10563 146 ALMFHAAEAMNVNVENCILVDDS-SAGAQSGIAAGMEVFYFCA 187 (221)
T ss_pred HHHHHHHHHcCCCHHHeEEEeCc-HhhHHHHHHCCCEEEEECC
Confidence 99999999999999999999999 7999999999999998853
No 21
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.96 E-value=2.3e-27 Score=186.11 Aligned_cols=180 Identities=24% Similarity=0.310 Sum_probs=136.2
Q ss_pred EEEccCCccccccccHHHHHHHHHHHh-CCC-CCHHHHHHHHHHHhcCCCccccccCCCChhHHHHHHHHhcCCCchHHH
Q 024886 53 VLLDAGGTLLQLAEPVEETYASIARKY-GLN-VDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTNDDYF 130 (261)
Q Consensus 53 iifD~DGTL~d~~~~~~~~~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (261)
|+||+||||+|+...+.+++.++++++ |.+ .+.+.... ..+......+. . .+.... ..
T Consensus 1 iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~~~~~~--------------~-~~~~~~-~~ 60 (205)
T TIGR01454 1 VVFDLDGVLVDSFAVMREAFAIAYREVVGDGPAPFEEYRR----HLGRYFPDIMR--------------I-MGLPLE-ME 60 (205)
T ss_pred CeecCcCccccCHHHHHHHHHHHHHHhcCCCCCCHHHHHH----HhCccHHHHHH--------------H-cCCCHH-HH
Confidence 689999999999999999999999884 764 34433222 22222111111 1 111100 11
Q ss_pred HHH-HHHHhhCCceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHH
Q 024886 131 EEV-YEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAA 208 (261)
Q Consensus 131 ~~~-~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~ 208 (261)
+.. ...+.......++||+.++|+.|+++|++++|+||+... +...++.+|+..+|+.++++++.+.+||+++.|..+
T Consensus 61 ~~~~~~~~~~~~~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~ 140 (205)
T TIGR01454 61 EPFVRESYRLAGEVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLPLFDHVIGSDEVPRPKPAPDIVREA 140 (205)
T ss_pred HHHHHHHHHhhcccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChhheeeEEecCcCCCCCCChHHHHHH
Confidence 111 112221234689999999999999999999999998877 788999999999999999999988999999999999
Q ss_pred HHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCChHHH
Q 024886 209 LDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFSDV 253 (261)
Q Consensus 209 ~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~el 253 (261)
++++|++|+++++|||+ .+|+++|+++|+.++++..+..+..++
T Consensus 141 ~~~~~~~~~~~l~igD~-~~Di~aA~~~Gi~~i~~~~g~~~~~~l 184 (205)
T TIGR01454 141 LRLLDVPPEDAVMVGDA-VTDLASARAAGTATVAALWGEGDAGEL 184 (205)
T ss_pred HHHcCCChhheEEEcCC-HHHHHHHHHcCCeEEEEEecCCChhhh
Confidence 99999999999999999 799999999999999887665554444
No 22
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.96 E-value=2e-27 Score=183.48 Aligned_cols=177 Identities=24% Similarity=0.313 Sum_probs=133.2
Q ss_pred EEEEccCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCccccccCCCChhHHHHHHHHhcC-CC---ch
Q 024886 52 AVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATG-CT---ND 127 (261)
Q Consensus 52 ~iifD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~ 127 (261)
+|+||+||||+|+...+..++.+++.++|.+.+.+.... ..+. .....+..+...... .. ..
T Consensus 1 ~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~----~~g~----------~~~~~~~~~~~~~~~~~~~~~~~ 66 (185)
T TIGR01990 1 AVIFDLDGVITDTAEYHYLAWKALADELGIPFDEEFNES----LKGV----------SREDSLERILDLGGKKYSEEEKE 66 (185)
T ss_pred CeEEcCCCccccChHHHHHHHHHHHHHcCCCCCHHHHHH----hcCC----------ChHHHHHHHHHhcCCCCCHHHHH
Confidence 489999999999999999999999999998865543221 1111 112222222222111 11 11
Q ss_pred HHHHHHHHHHh----hCCceeeCccHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCcccccceEEecCCCCCCCCCHH
Q 024886 128 DYFEEVYEYYA----KGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPR 203 (261)
Q Consensus 128 ~~~~~~~~~~~----~~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~ 203 (261)
++.....+.|. ......++||+.++|+.|+++|++++|+||+.. ....++.+|+..+|+.++++++.+..||+|+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~pg~~~~L~~L~~~g~~~~i~s~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~kp~p~ 145 (185)
T TIGR01990 67 ELAERKNDYYVELLKELTPADVLPGIKNLLDDLKKNNIKIALASASKN-APTVLEKLGLIDYFDAIVDPAEIKKGKPDPE 145 (185)
T ss_pred HHHHHHHHHHHHHHHhcCCcccCccHHHHHHHHHHCCCeEEEEeCCcc-HHHHHHhcCcHhhCcEEEehhhcCCCCCChH
Confidence 12222222222 122247899999999999999999999998643 4668999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEEC
Q 024886 204 IFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWG 244 (261)
Q Consensus 204 ~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~ 244 (261)
.|..++++++++|+++++|||+ .+|+++|+++|+.+|+|+
T Consensus 146 ~~~~~~~~~~~~~~~~v~vgD~-~~di~aA~~aG~~~i~v~ 185 (185)
T TIGR01990 146 IFLAAAEGLGVSPSECIGIEDA-QAGIEAIKAAGMFAVGVG 185 (185)
T ss_pred HHHHHHHHcCCCHHHeEEEecC-HHHHHHHHHcCCEEEecC
Confidence 9999999999999999999999 899999999999999874
No 23
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.96 E-value=2.7e-27 Score=182.81 Aligned_cols=178 Identities=24% Similarity=0.319 Sum_probs=135.1
Q ss_pred ccEEEEccCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCccccccCCCChhHHHHHHHHhc-CCCch-
Q 024886 50 YDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEAT-GCTND- 127 (261)
Q Consensus 50 ~k~iifD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~- 127 (261)
+++|+||+||||+|+...+..++.++++++|.+++.+. .. ...+ ......+..+..... .....
T Consensus 1 ~~~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~-~~---~~~g----------~~~~~~~~~~~~~~~~~~~~~~ 66 (185)
T TIGR02009 1 YKAVIFDMDGVIVDTAPLHAQAWKHLADKYGIEFDKQY-NT---SLGG----------LSREDILRAILKLRKPGLSLET 66 (185)
T ss_pred CCeEEEcCCCcccCChHHHHHHHHHHHHHcCCCCCHHH-HH---HcCC----------CCHHHHHHHHHHhcCCCCCHHH
Confidence 47899999999999999888899999999998765321 11 1111 111222333332221 11111
Q ss_pred --HHHHHHHHHHhh---CCceeeCccHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCcccccceEEecCCCCCCCCCH
Q 024886 128 --DYFEEVYEYYAK---GEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDP 202 (261)
Q Consensus 128 --~~~~~~~~~~~~---~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~ 202 (261)
.+.....+.+.+ .....++||+.++|+.|+++|++++++||+ ..++.+++.+|+..+|+.++++++.+..||+|
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~i~i~S~~-~~~~~~l~~~~l~~~f~~v~~~~~~~~~kp~~ 145 (185)
T TIGR02009 67 IHQLAERKNELYRELLRLTGAEVLPGIENFLKRLKKKGIAVGLGSSS-KNADRILAKLGLTDYFDAIVDADEVKEGKPHP 145 (185)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHcCCeEEEEeCc-hhHHHHHHHcChHHHCCEeeehhhCCCCCCCh
Confidence 122222222221 223589999999999999999999999998 55788999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEE
Q 024886 203 RIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLW 243 (261)
Q Consensus 203 ~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v 243 (261)
++|..+++++|++|+++++|||+ ..|+++|+++|+.+++|
T Consensus 146 ~~~~~~~~~~~~~~~~~v~IgD~-~~di~aA~~~G~~~i~v 185 (185)
T TIGR02009 146 ETFLLAAELLGVSPNECVVFEDA-LAGVQAARAAGMFAVAV 185 (185)
T ss_pred HHHHHHHHHcCCCHHHeEEEeCc-HhhHHHHHHCCCeEeeC
Confidence 99999999999999999999999 89999999999999864
No 24
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.96 E-value=5.3e-27 Score=186.58 Aligned_cols=193 Identities=19% Similarity=0.326 Sum_probs=139.1
Q ss_pred ccEEEEccCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCccccccCCCChhH----HHHHHHHhcCCC
Q 024886 50 YDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPF----WRLVVSEATGCT 125 (261)
Q Consensus 50 ~k~iifD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 125 (261)
+|+|+||+||||+|+......++.++++++|...+...... +.......+..+.........+ +...........
T Consensus 1 ~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (224)
T TIGR02254 1 YKTLLFDLDDTILDFQAAEALALRLLFEDQGIPLTEDMFAQ-YKEINQGLWRAYEEGKITKDEVVNTRFSALLKEYNTEA 79 (224)
T ss_pred CCEEEEcCcCcccccchHHHHHHHHHHHHhCCCccHHHHHH-HHHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCC
Confidence 47899999999999999888899999999998765443221 1111111111111111111111 111222221111
Q ss_pred c-hHHHHHHHHHHhhCCceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHH
Q 024886 126 N-DDYFEEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPR 203 (261)
Q Consensus 126 ~-~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~ 203 (261)
. +.+...+.+.+.. ...++||+.++|+.|+++ ++++|+||+... +...++.+|+..+|+.++++++.+..||+|+
T Consensus 80 ~~~~~~~~~~~~~~~--~~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~~~ 156 (224)
T TIGR02254 80 DEALLNQKYLRFLEE--GHQLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKSGLFPFFDDIFVSEDAGIQKPDKE 156 (224)
T ss_pred cHHHHHHHHHHHHhc--cCeeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHCCcHhhcCEEEEcCccCCCCCCHH
Confidence 1 1233333333322 247899999999999999 999999998877 6889999999999999999999999999999
Q ss_pred HHHHHHHHc-CCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCC
Q 024886 204 IFKAALDQM-SVEASRTVHIGDDEKADKQGANSLGIDCWLWGID 246 (261)
Q Consensus 204 ~~~~~~~~l-~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~ 246 (261)
+|..+++++ |++|+++++|||+..+|+++|+++|+.++++..+
T Consensus 157 ~~~~~~~~~~~~~~~~~v~igD~~~~di~~A~~~G~~~i~~~~~ 200 (224)
T TIGR02254 157 IFNYALERMPKFSKEEVLMIGDSLTADIKGGQNAGLDTCWMNPD 200 (224)
T ss_pred HHHHHHHHhcCCCchheEEECCCcHHHHHHHHHCCCcEEEECCC
Confidence 999999999 9999999999999337999999999999998765
No 25
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.95 E-value=3.5e-27 Score=192.08 Aligned_cols=184 Identities=19% Similarity=0.302 Sum_probs=139.7
Q ss_pred cccEEEEccCCccccccccHHHHHHHHHHHhCCCCCHH-HHHHHHHHHhcCCCccccccCCCChhHHHHHHHHhc---CC
Q 024886 49 AYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSA-DIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEAT---GC 124 (261)
Q Consensus 49 ~~k~iifD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 124 (261)
.+|+|+||+||||+|+...+..++..+++++|.+.... ..... .+.. ....+...+.... +.
T Consensus 12 ~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~----~g~~----------~~~~~~~~l~~~~~~~~~ 77 (272)
T PRK13223 12 LPRLVMFDLDGTLVDSVPDLAAAVDRMLLELGRPPAGLEAVRHW----VGNG----------APVLVRRALAGSIDHDGV 77 (272)
T ss_pred cCCEEEEcCCCccccCHHHHHHHHHHHHHHcCCCCCCHHHHHHH----hChh----------HHHHHHHHhcccccccCC
Confidence 57899999999999999999999999999999875432 22221 1110 0111111111000 01
Q ss_pred C---chHHHHHHHHHHhhC-CceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCC
Q 024886 125 T---NDDYFEEVYEYYAKG-EAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEK 199 (261)
Q Consensus 125 ~---~~~~~~~~~~~~~~~-~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~K 199 (261)
. .+++...+.+.|... ....++||+.++|+.|+++|++++|+||++.. +...++.+|+..+|+.++++++.+..|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~~f~~i~~~d~~~~~K 157 (272)
T PRK13223 78 DDELAEQALALFMEAYADSHELTVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGRYFRWIIGGDTLPQKK 157 (272)
T ss_pred CHHHHHHHHHHHHHHHHhcCcCCccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHhhCeEEEecCCCCCCC
Confidence 1 122223333333332 22478999999999999999999999998877 788999999999999999999888899
Q ss_pred CCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCC
Q 024886 200 PDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDV 247 (261)
Q Consensus 200 p~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~ 247 (261)
|+|++|+.+++++|++|+++++|||+ .+|+++|+++|+.++++.++.
T Consensus 158 p~p~~~~~~~~~~g~~~~~~l~IGD~-~~Di~aA~~aGi~~i~v~~G~ 204 (272)
T PRK13223 158 PDPAALLFVMKMAGVPPSQSLFVGDS-RSDVLAAKAAGVQCVALSYGY 204 (272)
T ss_pred CCcHHHHHHHHHhCCChhHEEEECCC-HHHHHHHHHCCCeEEEEecCC
Confidence 99999999999999999999999999 899999999999999887763
No 26
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.95 E-value=6.2e-27 Score=186.47 Aligned_cols=186 Identities=22% Similarity=0.246 Sum_probs=141.2
Q ss_pred cccccEEEEccCCccccccccHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCCccccccCCCChhHHHHHHHHhc-CC
Q 024886 47 KKAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNV-DSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEAT-GC 124 (261)
Q Consensus 47 ~~~~k~iifD~DGTL~d~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 124 (261)
.+++++|+||+||||+|+...+..++..+++++|.+. +...... ..+... ...+........ ..
T Consensus 3 ~~~~~~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~----------~~~~~~~~~~~~~~~ 68 (226)
T PRK13222 3 FMDIRAVAFDLDGTLVDSAPDLAAAVNAALAALGLPPAGEERVRT----WVGNGA----------DVLVERALTWAGREP 68 (226)
T ss_pred CCcCcEEEEcCCcccccCHHHHHHHHHHHHHHCCCCCCCHHHHHH----HhCccH----------HHHHHHHHhhccCCc
Confidence 3568999999999999998888889999999998864 3333222 111110 111222111100 11
Q ss_pred C---chHHHHHHHHHHhhC--CceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCC
Q 024886 125 T---NDDYFEEVYEYYAKG--EAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCE 198 (261)
Q Consensus 125 ~---~~~~~~~~~~~~~~~--~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~ 198 (261)
. .+.....+.+.|... ....++||+.++++.|+++|++++++||+... +..+++.+|+..+|+.+++++..+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~ 148 (226)
T PRK13222 69 DEELLEKLRELFDRHYAENVAGGSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIADYFSVVIGGDSLPNK 148 (226)
T ss_pred cHHHHHHHHHHHHHHHHHhccccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCccCccEEEcCCCCCCC
Confidence 1 122333344444332 12578999999999999999999999998877 68999999999999999999998899
Q ss_pred CCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCC
Q 024886 199 KPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDV 247 (261)
Q Consensus 199 Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~ 247 (261)
||+|++|..++++++++++++++|||+ .+|+++|+++|+.++++..+.
T Consensus 149 kp~~~~~~~~~~~~~~~~~~~i~igD~-~~Di~~a~~~g~~~i~v~~g~ 196 (226)
T PRK13222 149 KPDPAPLLLACEKLGLDPEEMLFVGDS-RNDIQAARAAGCPSVGVTYGY 196 (226)
T ss_pred CcChHHHHHHHHHcCCChhheEEECCC-HHHHHHHHHCCCcEEEECcCC
Confidence 999999999999999999999999999 799999999999999987653
No 27
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.95 E-value=1.6e-26 Score=183.25 Aligned_cols=103 Identities=20% Similarity=0.246 Sum_probs=95.8
Q ss_pred eeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEE
Q 024886 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVH 221 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~ 221 (261)
..++||+.++|+.|+++|++++|+||+... +...++.+|+..+|+.++++++.+..||+|+.|..+++++|++|++|++
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l~ 171 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAERTLF 171 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChHHEEE
Confidence 588999999999999999999999998876 6888999999999999999999999999999999999999999999999
Q ss_pred EcCCchhhhHHHHhCCCeE-EEECCC
Q 024886 222 IGDDEKADKQGANSLGIDC-WLWGID 246 (261)
Q Consensus 222 iGD~~~~Di~~a~~~G~~~-i~v~~~ 246 (261)
|||+ ..|+++|+++|+.+ +.|.++
T Consensus 172 igDs-~~di~aA~~aG~~~~~~v~~~ 196 (224)
T PRK14988 172 IDDS-EPILDAAAQFGIRYCLGVTNP 196 (224)
T ss_pred EcCC-HHHHHHHHHcCCeEEEEEeCC
Confidence 9999 79999999999984 667655
No 28
>PLN02940 riboflavin kinase
Probab=99.95 E-value=1.2e-26 Score=196.85 Aligned_cols=185 Identities=24% Similarity=0.273 Sum_probs=143.1
Q ss_pred ccccEEEEccCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCccccccCCCChhHHHHHHHHhc-CCCc
Q 024886 48 KAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEAT-GCTN 126 (261)
Q Consensus 48 ~~~k~iifD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 126 (261)
..+++|+||+||||+|+...+..++.++++++|...+.++.... .+. .....+..+..... ....
T Consensus 9 ~~ik~VIFDlDGTLvDt~~~~~~a~~~~~~~~G~~~~~~~~~~~----~G~----------~~~~~~~~~~~~~~~~~~~ 74 (382)
T PLN02940 9 KLVSHVILDLDGTLLNTDGIVSDVLKAFLVKYGKQWDGREAQKI----VGK----------TPLEAAATVVEDYGLPCST 74 (382)
T ss_pred ccCCEEEECCcCcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHh----cCC----------CHHHHHHHHHHHhCCCCCH
Confidence 35899999999999999999999999999999987765543321 111 11122222222211 1222
Q ss_pred hHHHHHHHHHHhh-CCceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHH-hcCcccccceEEecCCCCCCCCCHH
Q 024886 127 DDYFEEVYEYYAK-GEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLK-DLNVIDLFDAVVISSEVGCEKPDPR 203 (261)
Q Consensus 127 ~~~~~~~~~~~~~-~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~-~~gl~~~f~~i~~~~~~~~~Kp~~~ 203 (261)
+++.....+.+.. .....++||+.++|+.|+++|++++|+||.... +...++ ..|+..+|+.++++++++..||+|+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~ 154 (382)
T PLN02940 75 DEFNSEITPLLSEQWCNIKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKESFSVIVGGDEVEKGKPSPD 154 (382)
T ss_pred HHHHHHHHHHHHHHHccCCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHhhCCEEEehhhcCCCCCCHH
Confidence 3333333333322 123578999999999999999999999998877 677776 7899999999999999999999999
Q ss_pred HHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCC
Q 024886 204 IFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDV 247 (261)
Q Consensus 204 ~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~ 247 (261)
+|..+++.+|++|++|++|||+ ..|+++|+++|+.++++.++.
T Consensus 155 ~~~~a~~~lgv~p~~~l~VGDs-~~Di~aA~~aGi~~I~v~~g~ 197 (382)
T PLN02940 155 IFLEAAKRLNVEPSNCLVIEDS-LPGVMAGKAAGMEVIAVPSIP 197 (382)
T ss_pred HHHHHHHHcCCChhHEEEEeCC-HHHHHHHHHcCCEEEEECCCC
Confidence 9999999999999999999999 799999999999999998763
No 29
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.95 E-value=1.8e-26 Score=184.82 Aligned_cols=192 Identities=17% Similarity=0.201 Sum_probs=128.6
Q ss_pred ccccEEEEccCCccccccccHHHHHHHHHHHhCCC------CCHHHHHHHHHHHhcCCCccccc-cCCCChhHHHHHHHH
Q 024886 48 KAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLN------VDSADIKKGFRKAFAAPWPEKLR-YEGDGRPFWRLVVSE 120 (261)
Q Consensus 48 ~~~k~iifD~DGTL~d~~~~~~~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 120 (261)
.++|+|+||+||||+|+...+..+++++++.++.. .+..... .+............. ............+.
T Consensus 8 ~~~k~iiFDlDGTL~D~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 85 (238)
T PRK10748 8 GRISALTFDLDDTLYDNRPVILRTEQEALAFVQNYHPALRSFQNEDLQ-RLRQALREAEPEIYHDVTRWRWRAIEQAML- 85 (238)
T ss_pred CCceeEEEcCcccccCChHHHHHHHHHHHHHHHHhCcchhhCCHHHHH-HHHHHHHHhCchhhCcHHHHHHHHHHHHHH-
Confidence 35789999999999999888888888776554211 1112211 122211111111100 00000011111111
Q ss_pred hcCCCchH---HHHHHHHHHhhC-CceeeCccHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCcccccceEEecCCCC
Q 024886 121 ATGCTNDD---YFEEVYEYYAKG-EAWHLPHGAYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVG 196 (261)
Q Consensus 121 ~~~~~~~~---~~~~~~~~~~~~-~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~~~~~l~~~gl~~~f~~i~~~~~~~ 196 (261)
..+..... ..+.....+... ....++||+.++|+.|++. ++++++||++.. ++..|+..+|+.++++++.+
T Consensus 86 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~----~~~~gl~~~fd~i~~~~~~~ 160 (238)
T PRK10748 86 DAGLSAEEASAGADAAMINFAKWRSRIDVPQATHDTLKQLAKK-WPLVAITNGNAQ----PELFGLGDYFEFVLRAGPHG 160 (238)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHcC-CCEEEEECCCch----HHHCCcHHhhceeEecccCC
Confidence 22222222 112222222211 2257899999999999876 999999998765 37789999999999999999
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCC
Q 024886 197 CEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGID 246 (261)
Q Consensus 197 ~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~ 246 (261)
..||+|++|..+++++|++|++|++|||+...|+.+|+++|+.++++.++
T Consensus 161 ~~KP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~A~~aG~~~i~v~~~ 210 (238)
T PRK10748 161 RSKPFSDMYHLAAEKLNVPIGEILHVGDDLTTDVAGAIRCGMQACWINPE 210 (238)
T ss_pred cCCCcHHHHHHHHHHcCCChhHEEEEcCCcHHHHHHHHHCCCeEEEEcCC
Confidence 99999999999999999999999999999559999999999999999764
No 30
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.95 E-value=4.6e-27 Score=179.55 Aligned_cols=174 Identities=21% Similarity=0.404 Sum_probs=132.0
Q ss_pred EEEccCCccccccccHHHHHHHH-HHHhCCCCCHHHHHHHHHHHhcCCCccccccCCCChhHHHHHHHHhcCCCchHHHH
Q 024886 53 VLLDAGGTLLQLAEPVEETYASI-ARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTNDDYFE 131 (261)
Q Consensus 53 iifD~DGTL~d~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (261)
|+||+||||+|+...+.+++... +++++...+.+..... .. ......+..+..... .......+
T Consensus 1 iifD~dgtL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----------~~~~~~~~~~~~~~~-~~~~~~~~ 65 (176)
T PF13419_consen 1 IIFDLDGTLVDTDPAIFRALQRLALEEFGLEISAEELREL----FG----------KSYEEALERLLERFG-IDPEEIQE 65 (176)
T ss_dssp EEEESBTTTEEHHHHHHHHHHHHHHHHTTHHHHHHHHHHH----TT----------SHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred cEEECCCCcEeCHHHHHHHHHHHHHHHhCCCCCHHHHHHH----hC----------CCHHHHHHHhhhccc-hhHHHHHH
Confidence 79999999999988777788874 6667655322222221 11 011222333332221 11222223
Q ss_pred HHHHHHhhCCceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHH
Q 024886 132 EVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALD 210 (261)
Q Consensus 132 ~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~ 210 (261)
.+.+. ......+++||+.++|+.|+++|++++++||.+.. +...++.+|+..+|+.++++++.+..||++.+|..+++
T Consensus 66 ~~~~~-~~~~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~ 144 (176)
T PF13419_consen 66 LFREY-NLESKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALE 144 (176)
T ss_dssp HHHHH-HHHGGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHH
T ss_pred Hhhhh-hhhhccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccccccccccccchhhhhhhHHHHHHHHHH
Confidence 33332 22234799999999999999999999999999987 78999999999999999999999999999999999999
Q ss_pred HcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEE
Q 024886 211 QMSVEASRTVHIGDDEKADKQGANSLGIDCWLW 243 (261)
Q Consensus 211 ~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v 243 (261)
++|++|+++++|||+ ..|+++|+++|+.+|+|
T Consensus 145 ~~~~~p~~~~~vgD~-~~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 145 KLGIPPEEILFVGDS-PSDVEAAKEAGIKTIWV 176 (176)
T ss_dssp HHTSSGGGEEEEESS-HHHHHHHHHTTSEEEEE
T ss_pred HcCCCcceEEEEeCC-HHHHHHHHHcCCeEEeC
Confidence 999999999999999 69999999999999876
No 31
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.95 E-value=4.8e-27 Score=185.12 Aligned_cols=203 Identities=25% Similarity=0.287 Sum_probs=133.5
Q ss_pred ccEEEEccCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCcc-ccccCCCChhHHHHHHHHhcC-CCch
Q 024886 50 YDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPE-KLRYEGDGRPFWRLVVSEATG-CTND 127 (261)
Q Consensus 50 ~k~iifD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~ 127 (261)
+|+|+||+||||+|+.. ....|...+...|.+ .......+.......+.+ ..........++..+...... ....
T Consensus 2 ik~viFDldGtL~d~~~-~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 78 (211)
T TIGR02247 2 IKAVIFDFGGVLLPSPG-VMRRWETERGLPGLK--DFIVTVNITGPDFNPWARTFERGELTAEAFDGLFRHEYGLRLGHD 78 (211)
T ss_pred ceEEEEecCCceecCHH-HHHHHHHHcCCCCCc--cHHHHHHhcCCCCChHHHHHHcCCCCHHHHHHHHHHHhccccCCC
Confidence 57899999999999865 555665554444443 222122111111111111 100111112222222221111 0111
Q ss_pred HHHHHHHHHHhhCCceeeCccHHHHHHHHHHCCCeEEEEeCCchH---HHHHHHhcCcccccceEEecCCCCCCCCCHHH
Q 024886 128 DYFEEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR---LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRI 204 (261)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~---~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~ 204 (261)
.........+... ...++||+.++|+.|+++|++++|+||+... ....+...++..+|+.++++++.+..||+|.+
T Consensus 79 ~~~~~~~~~~~~~-~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~ 157 (211)
T TIGR02247 79 VRIAPVFPLLYGE-NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMALFDAVVESCLEGLRKPDPRI 157 (211)
T ss_pred cCchhhHHHHhcc-ccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhhCCEEEEeeecCCCCCCHHH
Confidence 1112222222221 3578999999999999999999999997643 23334456788999999999999999999999
Q ss_pred HHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCChHHHHHhh
Q 024886 205 FKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFSDVQNRI 257 (261)
Q Consensus 205 ~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~~l 257 (261)
|..+++++|++|++|++|||+ ..|+++|+++|+.++++.++.....+|.+++
T Consensus 158 ~~~~~~~~g~~~~~~l~i~D~-~~di~aA~~aG~~~i~v~~~~~~~~~l~~~~ 209 (211)
T TIGR02247 158 YQLMLERLGVAPEECVFLDDL-GSNLKPAAALGITTIKVSDEEQAIHDLEKAT 209 (211)
T ss_pred HHHHHHHcCCCHHHeEEEcCC-HHHHHHHHHcCCEEEEECCHHHHHHHHHHHh
Confidence 999999999999999999998 8999999999999999988777777777664
No 32
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.95 E-value=4.3e-26 Score=185.06 Aligned_cols=184 Identities=16% Similarity=0.240 Sum_probs=136.9
Q ss_pred ccccEEEEccCCccccccccHHHHHHHHHHHhCCC-CCHHHHHHHHHHHhcCCCccccccCCCChhHHHHHHHHhcCC--
Q 024886 48 KAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLN-VDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGC-- 124 (261)
Q Consensus 48 ~~~k~iifD~DGTL~d~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 124 (261)
+.+++|+||+||||+|+...+..++.++++++|.. .+.+..... .+... . ...... +.
T Consensus 60 ~~~k~vIFDlDGTLiDS~~~~~~a~~~~~~~~G~~~~~~~~~~~~----~g~~~----------~----~i~~~~-~~~~ 120 (273)
T PRK13225 60 QTLQAIIFDFDGTLVDSLPTVVAIANAHAPDFGYDPIDERDYAQL----RQWSS----------R----TIVRRA-GLSP 120 (273)
T ss_pred hhcCEEEECCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHH----hCccH----------H----HHHHHc-CCCH
Confidence 36899999999999999999999999999999986 344332221 11110 0 111111 11
Q ss_pred -CchHHHHHHHHHHhhC-CceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCC
Q 024886 125 -TNDDYFEEVYEYYAKG-EAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPD 201 (261)
Q Consensus 125 -~~~~~~~~~~~~~~~~-~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~ 201 (261)
...++.....+.+... ....++||+.++|+.|+++|++++|+||+... +...++.+|+.++|+.+++.+.. +++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~~F~~vi~~~~~---~~k 197 (273)
T PRK13225 121 WQQARLLQRVQRQLGDCLPALQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRSLFSVVQAGTPI---LSK 197 (273)
T ss_pred HHHHHHHHHHHHHHHhhcccCCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhheEEEEecCCC---CCC
Confidence 1122223333333221 23578999999999999999999999998877 79999999999999988877654 345
Q ss_pred HHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCChHHHH
Q 024886 202 PRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFSDVQ 254 (261)
Q Consensus 202 ~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~ 254 (261)
+..|..++++++++|++|++|||+ ..|+++|+++|+.++++..+.....++.
T Consensus 198 ~~~~~~~l~~~~~~p~~~l~IGDs-~~Di~aA~~AG~~~I~v~~g~~~~~~l~ 249 (273)
T PRK13225 198 RRALSQLVAREGWQPAAVMYVGDE-TRDVEAARQVGLIAVAVTWGFNDRQSLV 249 (273)
T ss_pred HHHHHHHHHHhCcChhHEEEECCC-HHHHHHHHHCCCeEEEEecCCCCHHHHH
Confidence 679999999999999999999999 8999999999999999988755544443
No 33
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.95 E-value=4.4e-26 Score=181.88 Aligned_cols=195 Identities=23% Similarity=0.292 Sum_probs=132.7
Q ss_pred cccccEEEEccCCccccccccHHHHHHHHHHHhCCCCCHHHHHH------HHHHHhcCCCccccccCCCChhHHHHHHHH
Q 024886 47 KKAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKK------GFRKAFAAPWPEKLRYEGDGRPFWRLVVSE 120 (261)
Q Consensus 47 ~~~~k~iifD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (261)
++++++|+||+||||+|.......+....+.+.+.......... .+.......... ...............
T Consensus 1 ~~~~k~i~FD~d~TL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 77 (229)
T COG1011 1 MMMIKAILFDLDGTLLDFDSAEFRAVLAEFAEIGVPETLEELALLKLIEKLEARFLRGEYTG---EYGLTLERLLELLER 77 (229)
T ss_pred CCceeEEEEecCCcccccchHHhHHHHHHHHHhchHHHhhhhHHHHHHHHHHHHHHcccchH---HHhhhHHHHHHHHHh
Confidence 35789999999999999876554433333333332211111000 011111100000 000000011111112
Q ss_pred hcCCCchHHHHHHHHHHhhCCceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCC
Q 024886 121 ATGCTNDDYFEEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEK 199 (261)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~K 199 (261)
................+.. ..+++|++.+.|+.++.. ++++++||+... ....++.+|+.++||.++.+++.+..|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~gl~~~Fd~v~~s~~~g~~K 154 (229)
T COG1011 78 LLGDEDAELVEELLAALAK--LLPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQLGLLDYFDAVFISEDVGVAK 154 (229)
T ss_pred hcccccHHHHHHHHHHHHh--hCccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHcCChhhhheEEEecccccCC
Confidence 2222233344444433332 358899999999999998 999999997765 799999999999999999999999999
Q ss_pred CCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCC
Q 024886 200 PDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDV 247 (261)
Q Consensus 200 p~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~ 247 (261)
|++.+|+.+++.+|++|++++||||+..+|+.+|+++||.++++.++.
T Consensus 155 P~~~~f~~~~~~~g~~p~~~l~VgD~~~~di~gA~~~G~~~vwi~~~~ 202 (229)
T COG1011 155 PDPEIFEYALEKLGVPPEEALFVGDSLENDILGARALGMKTVWINRGG 202 (229)
T ss_pred CCcHHHHHHHHHcCCCcceEEEECCChhhhhHHHHhcCcEEEEECCCC
Confidence 999999999999999999999999999999999999999999887653
No 34
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.94 E-value=1.8e-25 Score=183.14 Aligned_cols=191 Identities=20% Similarity=0.288 Sum_probs=129.7
Q ss_pred ccccEEEEccCCcccccc-ccHHHHHHHHHHHhCC-CC--CHHHHHHHHHHHhcCCCccccccCCCChhHHHHHHHHh--
Q 024886 48 KAYDAVLLDAGGTLLQLA-EPVEETYASIARKYGL-NV--DSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEA-- 121 (261)
Q Consensus 48 ~~~k~iifD~DGTL~d~~-~~~~~~~~~~~~~~g~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 121 (261)
..+++||||+||||+|+. ..+..+|.++++++|+ .. +.+.... +.. .+..... +...+....
T Consensus 38 ~~~k~VIFDlDGTLvDS~~~~~~~a~~~~l~~~G~~~~~~~~~~~~~-~~~-~g~~~~~----------~~~~~~~~~~~ 105 (286)
T PLN02779 38 ALPEALLFDCDGVLVETERDGHRVAFNDAFKEFGLRPVEWDVELYDE-LLN-IGGGKER----------MTWYFNENGWP 105 (286)
T ss_pred cCCcEEEEeCceeEEccccHHHHHHHHHHHHHcCCCCCCCCHHHHHH-HHc-cCCChHH----------HHHHHHHcCCC
Confidence 357999999999999999 8888999999999998 32 2222111 111 1110000 000000000
Q ss_pred ------c---CCCchH----HHHHHHHHHhh---CCceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCccc
Q 024886 122 ------T---GCTNDD----YFEEVYEYYAK---GEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVID 184 (261)
Q Consensus 122 ------~---~~~~~~----~~~~~~~~~~~---~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~ 184 (261)
. +...+. +.....+.|.. ...+.++||+.++|+.|+++|++++|+||+... +..+++.++...
T Consensus 106 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~y~~~~~~~~~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~ 185 (286)
T PLN02779 106 TSTIEKAPKDEEERKELVDSLHDRKTELFKELIESGALPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPE 185 (286)
T ss_pred ccccccCCccchhhHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcccc
Confidence 0 000011 11111122221 122478999999999999999999999998877 677777664333
Q ss_pred ccc--eEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCChH
Q 024886 185 LFD--AVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFS 251 (261)
Q Consensus 185 ~f~--~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~ 251 (261)
+++ .++++++++..||+|++|..+++++|++|+++++|||+ .+|+++|+++|+.+|++.++..+.+
T Consensus 186 ~~~~~~~v~~~~~~~~KP~p~~~~~a~~~~~~~p~~~l~IGDs-~~Di~aA~~aG~~~i~v~~g~~~~~ 253 (286)
T PLN02779 186 RAQGLDVFAGDDVPKKKPDPDIYNLAAETLGVDPSRCVVVEDS-VIGLQAAKAAGMRCIVTKSSYTADE 253 (286)
T ss_pred ccCceEEEeccccCCCCCCHHHHHHHHHHhCcChHHEEEEeCC-HHhHHHHHHcCCEEEEEccCCcccc
Confidence 333 23377778889999999999999999999999999999 7999999999999999977754433
No 35
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.94 E-value=4.4e-25 Score=172.27 Aligned_cols=193 Identities=18% Similarity=0.223 Sum_probs=129.6
Q ss_pred EEEEccCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCccccccCCCChhHHHHHHHHhcCC-CchHHH
Q 024886 52 AVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGC-TNDDYF 130 (261)
Q Consensus 52 ~iifD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 130 (261)
+|+||+||||++.+... .+.......+. +.......+.. ...+.+...+.....+++..+....... ..+.+.
T Consensus 2 ~viFDldgvL~d~~~~~--~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (199)
T PRK09456 2 LYIFDLGNVIVDIDFNR--VLGVWSDLSRV--PLATLKKRFTM--GEAFHQHERGEISDEAFAEALCHEMALSLSYEQFA 75 (199)
T ss_pred EEEEeCCCccccCcHHH--HHHHHHHhcCC--CHHHHHHHHhc--CcHHHHHhcCCCCHHHHHHHHHHHhCCCCCHHHHH
Confidence 69999999999975321 11111111222 23333222211 1112222222223344444443332221 123333
Q ss_pred HHHHHHHhhCCceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHh-cCcccccceEEecCCCCCCCCCHHHHHHH
Q 024886 131 EEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKD-LNVIDLFDAVVISSEVGCEKPDPRIFKAA 208 (261)
Q Consensus 131 ~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~-~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~ 208 (261)
..+.+.+ ..++||+.++|+.|+++|++++|+||++.. ....+.. .++..+|+.++++++.+..||+|++|+.+
T Consensus 76 ~~~~~~~-----~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~ 150 (199)
T PRK09456 76 HGWQAVF-----VALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHV 150 (199)
T ss_pred HHHHHHH-----hccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHHH
Confidence 3333322 268999999999999999999999998876 4544444 47888999999999999999999999999
Q ss_pred HHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCChHHHHHh
Q 024886 209 LDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFSDVQNR 256 (261)
Q Consensus 209 ~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~~ 256 (261)
++++|++|+++++|||+ ..|+++|+++|+.++++.++....+.|...
T Consensus 151 ~~~~~~~p~~~l~vgD~-~~di~aA~~aG~~~i~~~~~~~~~~~l~~~ 197 (199)
T PRK09456 151 LQAEGFSAADAVFFDDN-ADNIEAANALGITSILVTDKQTIPDYFAKV 197 (199)
T ss_pred HHHcCCChhHeEEeCCC-HHHHHHHHHcCCEEEEecCCccHHHHHHhc
Confidence 99999999999999998 799999999999999998866655555443
No 36
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.94 E-value=4.7e-25 Score=192.38 Aligned_cols=185 Identities=14% Similarity=0.181 Sum_probs=133.6
Q ss_pred ccccccccEEEEccCCccccccccHHHHHHHHHHHhCC-----C-CCHHHHHHHHHHHhcCCCccccccCCCChhHHHHH
Q 024886 44 KSVKKAYDAVLLDAGGTLLQLAEPVEETYASIARKYGL-----N-VDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLV 117 (261)
Q Consensus 44 ~~~~~~~k~iifD~DGTL~d~~~~~~~~~~~~~~~~g~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (261)
..-.+|+++|+||+||||+|+...+..+|.+++++++. . .+.+.+. ...+... ...+..+
T Consensus 235 ~~~~~m~k~vIFDlDGTLiDs~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~----~~~G~~~----------~~~~~~l 300 (459)
T PRK06698 235 KGENEMLQALIFDMDGTLFQTDKILELSLDDTFDHLRSLQLWDTVTPIDKYR----EIMGVPL----------PKVWEAL 300 (459)
T ss_pred cchHHhhhheeEccCCceecchhHHHHHHHHHHHHHhhhcccCCCCCHHHHH----HHcCCCh----------HHHHHHH
Confidence 33345679999999999999999999999999988741 1 1222222 2222211 1222222
Q ss_pred HHHhcCCCchHHHHHHHHHHhh---CCceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecC
Q 024886 118 VSEATGCTNDDYFEEVYEYYAK---GEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISS 193 (261)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~ 193 (261)
.........++....+.+.+.. ....+++||+.++|+.|+++|++++|+||+... +..+++.+|+..+|+.+++++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~~f~~i~~~d 380 (459)
T PRK06698 301 LPDHSLEIREQTDAYFLERLIENIKSGKGALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQWVTETFSIE 380 (459)
T ss_pred hhhcchhHHHHHHHHHHHHhHHHHhhcCCCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHhhcceeEecC
Confidence 2111100112222222222221 123588999999999999999999999999987 799999999999999999998
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCC
Q 024886 194 EVGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGID 246 (261)
Q Consensus 194 ~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~ 246 (261)
++. .||+|+.|..++++++ |++|++|||+ .+|+++|+++|+.++++.++
T Consensus 381 ~v~-~~~kP~~~~~al~~l~--~~~~v~VGDs-~~Di~aAk~AG~~~I~v~~~ 429 (459)
T PRK06698 381 QIN-SLNKSDLVKSILNKYD--IKEAAVVGDR-LSDINAAKDNGLIAIGCNFD 429 (459)
T ss_pred CCC-CCCCcHHHHHHHHhcC--cceEEEEeCC-HHHHHHHHHCCCeEEEEeCC
Confidence 874 4677889999999875 6899999999 79999999999999998665
No 37
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.93 E-value=1.6e-24 Score=203.72 Aligned_cols=190 Identities=28% Similarity=0.308 Sum_probs=145.2
Q ss_pred cccEEEEccCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCccccccCCCChhHHHHHHHHhc--CCCc
Q 024886 49 AYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEAT--GCTN 126 (261)
Q Consensus 49 ~~k~iifD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 126 (261)
++++|+|||||||+|+...+..+|.++++++|.+++.+..... .+.. ...++........ +...
T Consensus 74 ~ikaVIFDlDGTLiDS~~~~~~a~~~~~~~~G~~it~e~~~~~----~G~~----------~~~~~~~~~~~~~l~~~~~ 139 (1057)
T PLN02919 74 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFVPF----MGTG----------EANFLGGVASVKGVKGFDP 139 (1057)
T ss_pred CCCEEEECCCCCeEeChHHHHHHHHHHHHHcCCCCCHHHHHHH----hCCC----------HHHHHHHHHHhcCCCCCCH
Confidence 6899999999999999999999999999999988766554332 1111 1122222211111 1122
Q ss_pred hHHHHHHHH----HHhhCCceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcc-cccceEEecCCCCCCCC
Q 024886 127 DDYFEEVYE----YYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVI-DLFDAVVISSEVGCEKP 200 (261)
Q Consensus 127 ~~~~~~~~~----~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~-~~f~~i~~~~~~~~~Kp 200 (261)
.+..+++.+ .|.......++||+.++|+.|+++|++++|+||.... +...++.+|+. .+|+.++++++.+..||
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP 219 (1057)
T PLN02919 140 DAAKKRFFEIYLEKYAKPNSGIGFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDAIVSADAFENLKP 219 (1057)
T ss_pred HHHHHHHHHHHHHHhhhcccCccCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCCEEEECcccccCCC
Confidence 222233332 2222222357999999999999999999999998877 78899999996 78999999999999999
Q ss_pred CHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCChHHHH
Q 024886 201 DPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFSDVQ 254 (261)
Q Consensus 201 ~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~ 254 (261)
+|++|..+++++|++|++|++|||+ ..|+++|+++||.+|++..+. ..++|.
T Consensus 220 ~Pe~~~~a~~~lgv~p~e~v~IgDs-~~Di~AA~~aGm~~I~v~~~~-~~~~L~ 271 (1057)
T PLN02919 220 APDIFLAAAKILGVPTSECVVIEDA-LAGVQAARAAGMRCIAVTTTL-SEEILK 271 (1057)
T ss_pred CHHHHHHHHHHcCcCcccEEEEcCC-HHHHHHHHHcCCEEEEECCCC-CHHHHh
Confidence 9999999999999999999999999 799999999999999998764 345543
No 38
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.93 E-value=6.4e-25 Score=169.34 Aligned_cols=173 Identities=19% Similarity=0.269 Sum_probs=122.8
Q ss_pred cEEEEccCCccccccccHHHHHHHHHH-----HhCCCCCHH-HHHHHHHHHhcCCCccccccCCCChhHHHHHHHHhcCC
Q 024886 51 DAVLLDAGGTLLQLAEPVEETYASIAR-----KYGLNVDSA-DIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGC 124 (261)
Q Consensus 51 k~iifD~DGTL~d~~~~~~~~~~~~~~-----~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (261)
++|+||+||||+|+...+..++.+.+. ++|++.... .....+....+. .+ ...... ...
T Consensus 1 ~~viFDlDGTL~ds~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~g~-------------~~-~~~~~~-~~~ 65 (184)
T TIGR01993 1 DVWFFDLDNTLYPHSAGIFLQIDRNITEFVAARLKLSEEEARVLRKDYYREYGT-------------TL-AGLMIL-HEI 65 (184)
T ss_pred CeEEEeCCCCCCCCcccHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHch-------------HH-HHHHHh-hCC
Confidence 479999999999998888888877654 446542211 111111111111 00 011111 112
Q ss_pred CchHHHHHHHHHHhhCCceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCC----CC
Q 024886 125 TNDDYFEEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGC----EK 199 (261)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~----~K 199 (261)
....+...+.+.+. .....++||+.++|+.|+ ++++|+||++.. +...++.+|+..+|+.++++++.+. .|
T Consensus 66 ~~~~~~~~~~~~~~-~~~~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~K 141 (184)
T TIGR01993 66 DADEYLRYVHGRLP-YEKLKPDPELRNLLLRLP---GRKIIFTNGDRAHARRALNRLGIEDCFDGIFCFDTANPDYLLPK 141 (184)
T ss_pred CHHHHHHHHhccCC-HHhCCCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHHHHcCcHhhhCeEEEeecccCccCCCC
Confidence 22222222222110 112468999999999997 579999999877 7999999999999999999998876 59
Q ss_pred CCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEE
Q 024886 200 PDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLW 243 (261)
Q Consensus 200 p~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v 243 (261)
|+|++|..+++++|++|+++++|||+ ..|+++|+++|+.+++|
T Consensus 142 P~p~~~~~~~~~~~~~~~~~l~vgD~-~~di~aA~~~G~~~i~v 184 (184)
T TIGR01993 142 PSPQAYEKALREAGVDPERAIFFDDS-ARNIAAAKALGMKTVLV 184 (184)
T ss_pred CCHHHHHHHHHHhCCCccceEEEeCC-HHHHHHHHHcCCEEeeC
Confidence 99999999999999999999999999 79999999999999864
No 39
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.93 E-value=5e-24 Score=166.07 Aligned_cols=176 Identities=19% Similarity=0.188 Sum_probs=125.5
Q ss_pred EEEEccCCccccccccHHHHHHHHHHHhC-CCCCHHHHHHHHHHHhc-CCCccccccCCCChhHHHHHHHHh------cC
Q 024886 52 AVLLDAGGTLLQLAEPVEETYASIARKYG-LNVDSADIKKGFRKAFA-APWPEKLRYEGDGRPFWRLVVSEA------TG 123 (261)
Q Consensus 52 ~iifD~DGTL~d~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~ 123 (261)
+|+||+||||+|+...+..++.++++++| ..++.+.....+..... ..+. .....+...+... ..
T Consensus 2 ~viFD~DGTLiDs~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 74 (197)
T TIGR01548 2 ALVLDMDGVMADVSQSYRRAIIDTVEHFGGVSVTHADIDHTKLAGNANNDWQ-------LTHRLVVDGLNSASSERVRDA 74 (197)
T ss_pred ceEEecCceEEechHHHHHHHHHHHHHHcCCCCCHHHHHHHHHccCccCchH-------HHHHHHHHhhhcccchhccCC
Confidence 68999999999999999999999999997 45555544332211000 0000 0000001111100 01
Q ss_pred CCchHHHHHHHHHHhhCC-----------ceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEe
Q 024886 124 CTNDDYFEEVYEYYAKGE-----------AWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVI 191 (261)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~-----------~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~ 191 (261)
...+.+...+.+.|.... ...+.+++.++|+.|++.|++++|+||++.. +..+++.+|+..+|+.+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~f~~~~~ 154 (197)
T TIGR01548 75 PTLEAVTAQFQALYQGVGYYRDLATLGLIEDETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEILFPVQIW 154 (197)
T ss_pred ccHHHHHHHHHHHHcCCcccccccchhhhccccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchhhCCEEEe
Confidence 123334444444443210 1234556699999999999999999999877 7999999999999999999
Q ss_pred cCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhC
Q 024886 192 SSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSL 236 (261)
Q Consensus 192 ~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~ 236 (261)
+++... ||+|+.|..+++++|+++++|++|||+ .+|+++|+++
T Consensus 155 ~~~~~~-KP~p~~~~~~~~~~~~~~~~~i~vGD~-~~Di~aA~~a 197 (197)
T TIGR01548 155 MEDCPP-KPNPEPLILAAKALGVEACHAAMVGDT-VDDIITGRKA 197 (197)
T ss_pred ecCCCC-CcCHHHHHHHHHHhCcCcccEEEEeCC-HHHHHHHHhC
Confidence 998877 999999999999999999999999999 7999999874
No 40
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.92 E-value=6.9e-24 Score=163.38 Aligned_cols=100 Identities=28% Similarity=0.448 Sum_probs=91.6
Q ss_pred eeeCccHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEE
Q 024886 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHI 222 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~i 222 (261)
.+++||+.++|+.|++.|++++|+||+.......+.++|+..+|+.++++++.+.+||+|..|..+++++|++|+++++|
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~~~~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~v 163 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDHAVLVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLGLKPEECLFV 163 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcCCCcceEEEE
Confidence 47899999999999999999999999887664444459999999999999999999999999999999999999999999
Q ss_pred cCCchhhhHHHHhCCCeEEEE
Q 024886 223 GDDEKADKQGANSLGIDCWLW 243 (261)
Q Consensus 223 GD~~~~Di~~a~~~G~~~i~v 243 (261)
||+ ..|+++|+++|+.+|++
T Consensus 164 gD~-~~di~aA~~~G~~~i~v 183 (183)
T TIGR01509 164 DDS-PAGIEAAKAAGMHTVLV 183 (183)
T ss_pred cCC-HHHHHHHHHcCCEEEeC
Confidence 999 79999999999999864
No 41
>PLN02811 hydrolase
Probab=99.91 E-value=4e-23 Score=163.70 Aligned_cols=178 Identities=21% Similarity=0.258 Sum_probs=129.3
Q ss_pred cCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCccccccCCCChhHHHHHHHHhc-C--CCchHHHHHH
Q 024886 57 AGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEAT-G--CTNDDYFEEV 133 (261)
Q Consensus 57 ~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~ 133 (261)
+||||+|+...+..+|.++++++|+.++.+... ...+.. ....+..+..... . .....+....
T Consensus 1 ~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~----~~~G~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (220)
T PLN02811 1 MDGLLLDTEKFYTEVQEKILARYGKTFDWSLKA----KMMGKK----------AIEAARIFVEESGLSDSLSPEDFLVER 66 (220)
T ss_pred CCCcceecHHHHHHHHHHHHHHcCCCCCHHHHH----HccCCC----------HHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 699999999999999999999999876544221 122211 1122222222211 1 1112222222
Q ss_pred HHHHhh-CCceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HH-HHHHhcCcccccceEEecC--CCCCCCCCHHHHHHH
Q 024886 134 YEYYAK-GEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LR-KLLKDLNVIDLFDAVVISS--EVGCEKPDPRIFKAA 208 (261)
Q Consensus 134 ~~~~~~-~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~-~~l~~~gl~~~f~~i~~~~--~~~~~Kp~~~~~~~~ 208 (261)
...+.. .....++||+.++|+.|+++|++++|+||.... .. ..++..++..+|+.+++++ +++.+||+|++|..+
T Consensus 67 ~~~~~~~~~~~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a 146 (220)
T PLN02811 67 EAMLQDLFPTSDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAA 146 (220)
T ss_pred HHHHHHHHhhCCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCCEEEECChhhccCCCCCcHHHHHH
Confidence 222221 112578999999999999999999999998765 43 3444457888999999999 888899999999999
Q ss_pred HHHcC---CCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCC
Q 024886 209 LDQMS---VEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKT 249 (261)
Q Consensus 209 ~~~l~---~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~ 249 (261)
+++++ ++|++|++|||+ ..|+++|+++|+.+|++.++..+
T Consensus 147 ~~~~~~~~~~~~~~v~IgDs-~~di~aA~~aG~~~i~v~~~~~~ 189 (220)
T PLN02811 147 ARRFEDGPVDPGKVLVFEDA-PSGVEAAKNAGMSVVMVPDPRLD 189 (220)
T ss_pred HHHhCCCCCCccceEEEecc-HhhHHHHHHCCCeEEEEeCCCCc
Confidence 99997 999999999999 79999999999999999876544
No 42
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.91 E-value=2.3e-23 Score=156.10 Aligned_cols=153 Identities=29% Similarity=0.480 Sum_probs=116.4
Q ss_pred EEEEccCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCccccccCCCChhHHHHHHHHhcCCCchHHHH
Q 024886 52 AVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTNDDYFE 131 (261)
Q Consensus 52 ~iifD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (261)
+|+||+||||+|+...+..+|.+.++++|.. .+.+ ....+... ..+ ..... ..+
T Consensus 1 ~iifD~DGTL~d~~~~~~~~~~~~~~~~~~~--~~~~----~~~~g~~~----------~~~-~~~~~---------~~~ 54 (154)
T TIGR01549 1 AILFDIDGTLVDSSFAIRRAFEETLEEFGED--FQAL----KALRGLAE----------ELL-YRIAT---------SFE 54 (154)
T ss_pred CeEecCCCcccccHHHHHHHHHHHHHHhccc--HHHH----HHHHccCh----------HHH-HHHHH---------HHH
Confidence 4899999999999888889999999998852 2222 11121100 011 11100 011
Q ss_pred HHHHHHhhCCceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHH
Q 024886 132 EVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALD 210 (261)
Q Consensus 132 ~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~ 210 (261)
++.. +.. ....+||+.++|+.|+++|++++|+||+... +...++.+ +..+|+.++++++.+ .||+|+.|..+++
T Consensus 55 ~~~~-~~~--~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l~~~f~~i~~~~~~~-~Kp~~~~~~~~~~ 129 (154)
T TIGR01549 55 ELLG-YDA--EEAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-LGDYFDLILGSDEFG-AKPEPEIFLAALE 129 (154)
T ss_pred HHhC-cch--hheeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-HHhcCcEEEecCCCC-CCcCHHHHHHHHH
Confidence 1111 211 2467899999999999999999999999877 67777877 788999999999888 9999999999999
Q ss_pred HcCCCCCcEEEEcCCchhhhHHHHhCC
Q 024886 211 QMSVEASRTVHIGDDEKADKQGANSLG 237 (261)
Q Consensus 211 ~l~~~~~~~l~iGD~~~~Di~~a~~~G 237 (261)
++|+++ +|++|||+ ..|+++|+++|
T Consensus 130 ~~~~~~-~~l~iGDs-~~Di~aa~~aG 154 (154)
T TIGR01549 130 SLGLPP-EVLHVGDN-LNDIEGARNAG 154 (154)
T ss_pred HcCCCC-CEEEEeCC-HHHHHHHHHcc
Confidence 999999 99999999 89999999987
No 43
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=99.90 E-value=4.9e-24 Score=163.10 Aligned_cols=170 Identities=19% Similarity=0.272 Sum_probs=117.0
Q ss_pred EEEEccCCccccccccHHHHHHHHHHHhCCC---CCHHHHHHHHHHHhcCCCccccccCCCChhHHHHHHHHhcCCC-ch
Q 024886 52 AVLLDAGGTLLQLAEPVEETYASIARKYGLN---VDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCT-ND 127 (261)
Q Consensus 52 ~iifD~DGTL~d~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 127 (261)
+|+||+||||+|+...+..++..++.+.+.. .+.......+.......+..+.. ........+.... +.. ..
T Consensus 1 ~viFD~DGTL~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-g~~~~~ 76 (175)
T TIGR01493 1 AMVFDVYGTLVDVHGGVRACLAAIAPEGGAFSDLWRAKQQEYSWRRSLMGDRRAFPE---DTVRALRYIADRL-GLDAEP 76 (175)
T ss_pred CeEEecCCcCcccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhcCcCCHHH---HHHHHHHHHHHHc-CCCCCH
Confidence 4899999999999988888888777664421 11111121111111100000000 0011222222222 222 22
Q ss_pred HHHHHHHHHHhhCCceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHHHHH
Q 024886 128 DYFEEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFK 206 (261)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~ 206 (261)
+..+.+.+.+.. ..++||+.++|+ +++|+||++.. +...++.+|+..+|+.++++++++..||+|+.|.
T Consensus 77 ~~~~~~~~~~~~---~~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~f~ 146 (175)
T TIGR01493 77 KYGERLRDAYKN---LPPWPDSAAALA-------RVAILSNASHWAFDQFAQQAGLPWYFDRAFSVDTVRAYKPDPVVYE 146 (175)
T ss_pred HHHHHHHHHHhc---CCCCCchHHHHH-------HHhhhhCCCHHHHHHHHHHCCCHHHHhhhccHhhcCCCCCCHHHHH
Confidence 334444444433 478999999998 38999999887 7889999999999999999999999999999999
Q ss_pred HHHHHcCCCCCcEEEEcCCchhhhHHHHhC
Q 024886 207 AALDQMSVEASRTVHIGDDEKADKQGANSL 236 (261)
Q Consensus 207 ~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~ 236 (261)
.+++++|++|++|++|||+ ..|+.+|+++
T Consensus 147 ~~~~~~~~~p~~~l~vgD~-~~Di~~A~~~ 175 (175)
T TIGR01493 147 LVFDTVGLPPDRVLMVAAH-QWDLIGARKF 175 (175)
T ss_pred HHHHHHCCCHHHeEeEecC-hhhHHHHhcC
Confidence 9999999999999999999 7999999864
No 44
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.89 E-value=4.2e-22 Score=155.27 Aligned_cols=166 Identities=16% Similarity=0.205 Sum_probs=111.1
Q ss_pred cccEEEEccCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCccccccCCCChhHHHHHHHHhcCCCchH
Q 024886 49 AYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTNDD 128 (261)
Q Consensus 49 ~~k~iifD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (261)
|+|+|+||+||||+|.. .++.++++++|++. ++....+........ ... .+.. ..
T Consensus 1 m~k~viFDlDGTLiD~~----~~~~~~~~~~g~~~--~~~~~~~g~~~~~~~--------------~~~----~~~~-~~ 55 (197)
T PHA02597 1 MKPTILTDVDGVLLSWQ----SGLPYFAQKYNIPT--DHILKMIQDERFRDP--------------GEL----FGCD-QE 55 (197)
T ss_pred CCcEEEEecCCceEchh----hccHHHHHhcCCCH--HHHHHHHhHhhhcCH--------------HHH----hccc-HH
Confidence 37899999999999954 35667777888643 333332221111000 000 1111 11
Q ss_pred HHHHHHHHHh-h--CCceeeCccHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCccc----ccceEEecCCCCCCCC
Q 024886 129 YFEEVYEYYA-K--GEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTRL-RKLLKDLNVID----LFDAVVISSEVGCEKP 200 (261)
Q Consensus 129 ~~~~~~~~~~-~--~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~~-~~~l~~~gl~~----~f~~i~~~~~~~~~Kp 200 (261)
...++.+.|. . .....++||+.++|+.|++. ++++++||..... ...++.+++.. +|+.+++++. .||
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~pG~~e~L~~L~~~-~~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~i~~~~~---~~~ 131 (197)
T PHA02597 56 LAKKLIEKYNNSDFIRYLSAYDDALDVINKLKED-YDFVAVTALGDSIDALLNRQFNLNALFPGAFSEVLMCGH---DES 131 (197)
T ss_pred HHHHHhhhhhHHHHHHhccCCCCHHHHHHHHHhc-CCEEEEeCCccchhHHHHhhCCHHHhCCCcccEEEEecc---Ccc
Confidence 1111111111 1 11247899999999999987 5788889876654 44566777654 4566777665 367
Q ss_pred CHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhC--CCeEEEECCC
Q 024886 201 DPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSL--GIDCWLWGID 246 (261)
Q Consensus 201 ~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~--G~~~i~v~~~ 246 (261)
+|+.|..+++++| |++++||||+ ..|+++|+++ |++++++..+
T Consensus 132 kp~~~~~a~~~~~--~~~~v~vgDs-~~di~aA~~a~~Gi~~i~~~~~ 176 (197)
T PHA02597 132 KEKLFIKAKEKYG--DRVVCFVDDL-AHNLDAAHEALSQLPVIHMLRG 176 (197)
T ss_pred cHHHHHHHHHHhC--CCcEEEeCCC-HHHHHHHHHHHcCCcEEEecch
Confidence 7899999999999 8889999999 8999999999 9999999776
No 45
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=99.89 E-value=1.2e-21 Score=151.99 Aligned_cols=185 Identities=22% Similarity=0.272 Sum_probs=145.5
Q ss_pred cccccEEEEccCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCccccccCCCChhHHHHHHHHh-cCCC
Q 024886 47 KKAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEA-TGCT 125 (261)
Q Consensus 47 ~~~~k~iifD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 125 (261)
...+.+++||+||||+|++..+.++|++++.+||...+.+.... ..+. ...+..+.++... ....
T Consensus 7 ~~~~~~~lfD~dG~lvdte~~y~~~~~~~~~~ygk~~~~~~~~~----~mG~----------~~~eaa~~~~~~~~dp~s 72 (222)
T KOG2914|consen 7 SLKVSACLFDMDGTLVDTEDLYTEAWQELLDRYGKPYPWDVKVK----SMGK----------RTSEAARLFVKKLPDPVS 72 (222)
T ss_pred ccceeeEEEecCCcEEecHHHHHHHHHHHHHHcCCCChHHHHHH----HcCC----------CHHHHHHHHHhhcCCCCC
Confidence 34678999999999999999999999999999998665554332 2221 1233334443222 3345
Q ss_pred chHHHHHHHHHHhh-CCceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcC-cccccceEEe--cCCCCCCCC
Q 024886 126 NDDYFEEVYEYYAK-GEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLN-VIDLFDAVVI--SSEVGCEKP 200 (261)
Q Consensus 126 ~~~~~~~~~~~~~~-~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~g-l~~~f~~i~~--~~~~~~~Kp 200 (261)
.+++..+..+.... .....+.||+.++++.|+.+|++++++|+.++. ....+.+++ +...|..++. ..++..+||
T Consensus 73 ~ee~~~e~~~~~~~~~~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~f~~~v~~d~~~v~~gKP 152 (222)
T KOG2914|consen 73 REEFNKEEEEILDRLFMNSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKNFSHVVLGDDPEVKNGKP 152 (222)
T ss_pred HHHHHHHHHHHHHHhccccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHhcCCCeecCCccccCCCC
Confidence 66666666555443 334688999999999999999999999998766 777777776 7777888887 567888999
Q ss_pred CHHHHHHHHHHcCCCC-CcEEEEcCCchhhhHHHHhCCCeEEEECCC
Q 024886 201 DPRIFKAALDQMSVEA-SRTVHIGDDEKADKQGANSLGIDCWLWGID 246 (261)
Q Consensus 201 ~~~~~~~~~~~l~~~~-~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~ 246 (261)
+|++|..+++.+|.++ +.|++++|+ ...+++|.++||+++++.+.
T Consensus 153 ~Pdi~l~A~~~l~~~~~~k~lVfeds-~~Gv~aa~aagm~vi~v~~~ 198 (222)
T KOG2914|consen 153 DPDIYLKAAKRLGVPPPSKCLVFEDS-PVGVQAAKAAGMQVVGVATP 198 (222)
T ss_pred CchHHHHHHHhcCCCCccceEEECCC-HHHHHHHHhcCCeEEEecCC
Confidence 9999999999999999 999999999 89999999999999999873
No 46
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.89 E-value=1.4e-21 Score=154.80 Aligned_cols=184 Identities=20% Similarity=0.202 Sum_probs=121.5
Q ss_pred cccccEEEEccCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCccccccCCCChhHHHHHHHHhcCCCc
Q 024886 47 KKAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTN 126 (261)
Q Consensus 47 ~~~~k~iifD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (261)
++++++++||+||||+++. .+.++++.+|......... ..... .......+.........+..
T Consensus 11 ~~~~k~iiFD~DGTL~~~~-----~~~~l~~~~g~~~~~~~~~---~~~~~--------g~~~~~~~~~~~~~~~~~~~- 73 (219)
T TIGR00338 11 LRSKKLVVFDMDSTLINAE-----TIDEIAKIAGVEEEVSEIT---ERAMR--------GELDFKASLRERVALLKGLP- 73 (219)
T ss_pred hccCCEEEEeCcccCCCch-----HHHHHHHHhCCHHHHHHHH---HHHHc--------CCCCHHHHHHHHHHHhCCCC-
Confidence 4578899999999999974 4667777777642222211 11111 01111222222222222221
Q ss_pred hHHHHHHHHHHhhCCceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEec-------C---CC
Q 024886 127 DDYFEEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVIS-------S---EV 195 (261)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~-------~---~~ 195 (261)
.+... +.+.. .+++||+.++|+.|+++|++++|+||+... +..+++.+|+..+|+..+.. . ..
T Consensus 74 ~~~~~---~~~~~---~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 147 (219)
T TIGR00338 74 VELLK---EVREN---LPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDAAFANRLEVEDGKLTGLVEGPI 147 (219)
T ss_pred HHHHH---HHHhc---CCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEeeEEEEECCEEEEEecCcc
Confidence 22222 22222 478999999999999999999999998877 68899999998887533221 1 12
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCChHHHHHh
Q 024886 196 GCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFSDVQNR 256 (261)
Q Consensus 196 ~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~~ 256 (261)
..++|++..|+.+++++++++++|++|||+ .+|+++|+.+|+..+ ++ +...+.+.+++
T Consensus 148 ~~~~~k~~~~~~~~~~~~~~~~~~i~iGDs-~~Di~aa~~ag~~i~-~~-~~~~~~~~a~~ 205 (219)
T TIGR00338 148 VDASYKGKTLLILLRKEGISPENTVAVGDG-ANDLSMIKAAGLGIA-FN-AKPKLQQKADI 205 (219)
T ss_pred cCCcccHHHHHHHHHHcCCCHHHEEEEECC-HHHHHHHHhCCCeEE-eC-CCHHHHHhchh
Confidence 235678999999999999999999999999 899999999999864 42 33334444433
No 47
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.88 E-value=4.1e-22 Score=147.80 Aligned_cols=103 Identities=33% Similarity=0.494 Sum_probs=85.8
Q ss_pred eeeCccHHHHHHHHHHCCCeEEEEeCCch----------------HHHHHHHhcCcccc--cc-eEEecCCCCCCCCCHH
Q 024886 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDT----------------RLRKLLKDLNVIDL--FD-AVVISSEVGCEKPDPR 203 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g~~i~i~T~~~~----------------~~~~~l~~~gl~~~--f~-~i~~~~~~~~~Kp~~~ 203 (261)
+.++||+.++|+.|+++|++++|+||.+. .+...++.+|+... |. ....++..+..||+++
T Consensus 26 ~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~KP~~~ 105 (147)
T TIGR01656 26 WQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVAVDGVLFCPHHPADNCSCRKPKPG 105 (147)
T ss_pred eEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCceeEEEECCCCCCCCCCCCCCCHH
Confidence 37899999999999999999999999762 25667888887521 11 1111355567899999
Q ss_pred HHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCC
Q 024886 204 IFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGID 246 (261)
Q Consensus 204 ~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~ 246 (261)
+|+.+++++|+++++|++|||+ ..|+++|+++|+.++++.++
T Consensus 106 ~~~~~~~~~~~~~~e~i~IGDs-~~Di~~A~~~Gi~~v~i~~~ 147 (147)
T TIGR01656 106 LILEALKRLGVDASRSLVVGDR-LRDLQAARNAGLAAVLLVDG 147 (147)
T ss_pred HHHHHHHHcCCChHHEEEEcCC-HHHHHHHHHCCCCEEEecCC
Confidence 9999999999999999999999 89999999999999999764
No 48
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.87 E-value=5.2e-21 Score=149.58 Aligned_cols=103 Identities=22% Similarity=0.203 Sum_probs=86.8
Q ss_pred eeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCC----------CHHHHHHHHHH
Q 024886 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKP----------DPRIFKAALDQ 211 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp----------~~~~~~~~~~~ 211 (261)
..++||+.++|+.|+++|++++|+||+... +..+++.+|+..+|+..+.+++.+..+| +++.+..+++.
T Consensus 79 ~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~~~ 158 (201)
T TIGR01491 79 ISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDYVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLKRE 158 (201)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCeEEEEEEEEcCCCeEecceeeEEccccHHHHHHHHHHH
Confidence 478999999999999999999999999887 7899999999888877666654443333 33688899999
Q ss_pred cCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCC
Q 024886 212 MSVEASRTVHIGDDEKADKQGANSLGIDCWLWGID 246 (261)
Q Consensus 212 l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~ 246 (261)
+|++++++++|||+ .+|+++|+.+|+..+..+.+
T Consensus 159 ~~~~~~~~i~iGDs-~~D~~~a~~ag~~~a~~~~~ 192 (201)
T TIGR01491 159 LNPSLTETVAVGDS-KNDLPMFEVADISISLGDEG 192 (201)
T ss_pred hCCCHHHEEEEcCC-HhHHHHHHhcCCeEEECCCc
Confidence 99999999999999 89999999999988655443
No 49
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=99.87 E-value=6.2e-21 Score=142.76 Aligned_cols=112 Identities=25% Similarity=0.470 Sum_probs=98.8
Q ss_pred eeeCccHHHHHHHHHHCCCeEEEEeCCc---------------hH-HHHHHHhcCcccccceEE-e----cCCCCCCCCC
Q 024886 143 WHLPHGAYQSILLLKDAGVKVAVVSNFD---------------TR-LRKLLKDLNVIDLFDAVV-I----SSEVGCEKPD 201 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g~~i~i~T~~~---------------~~-~~~~l~~~gl~~~f~~i~-~----~~~~~~~Kp~ 201 (261)
+.++||+.++|+.|+++|++++|+||.+ .. +...++.+|+. |+.++ + +++.+..||+
T Consensus 28 ~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~--fd~ii~~~~~~~~~~~~~KP~ 105 (161)
T TIGR01261 28 LRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGII--FDDVLICPHFPDDNCDCRKPK 105 (161)
T ss_pred eeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCc--eeEEEECCCCCCCCCCCCCCC
Confidence 4899999999999999999999999963 22 57778899986 77554 4 4778889999
Q ss_pred HHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCChHHHHHhh
Q 024886 202 PRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFSDVQNRI 257 (261)
Q Consensus 202 ~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~~l 257 (261)
+++|..+++++++++++++||||+ ..|+++|+++|+.++++.++.-+|+-+++-+
T Consensus 106 ~~~~~~~~~~~~~~~~e~l~IGD~-~~Di~~A~~aGi~~i~~~~~~~~~~~~~~~~ 160 (161)
T TIGR01261 106 IKLLEPYLKKNLIDKARSYVIGDR-ETDMQLAENLGIRGIQYDEEELNWDMIAEEL 160 (161)
T ss_pred HHHHHHHHHHcCCCHHHeEEEeCC-HHHHHHHHHCCCeEEEEChhhcCHHHHHHHh
Confidence 999999999999999999999998 8999999999999999999988888777643
No 50
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.86 E-value=1.5e-20 Score=144.46 Aligned_cols=102 Identities=24% Similarity=0.378 Sum_probs=86.6
Q ss_pred eeeCccHHHHHHHHHHCCCeEEEEeCCch---------------H-HHHHHHhcCcccccceEEec-----CCCCCCCCC
Q 024886 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDT---------------R-LRKLLKDLNVIDLFDAVVIS-----SEVGCEKPD 201 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g~~i~i~T~~~~---------------~-~~~~l~~~gl~~~f~~i~~~-----~~~~~~Kp~ 201 (261)
+.++||+.++|+.|+++|++++|+||.+. . +...++.+|+ .|+.++.+ ++.+..||+
T Consensus 28 ~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~--~f~~i~~~~~~~~~~~~~~KP~ 105 (181)
T PRK08942 28 WIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRGG--RLDGIYYCPHHPEDGCDCRKPK 105 (181)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCC--ccceEEECCCCCCCCCcCCCCC
Confidence 48899999999999999999999999762 1 3345666676 37777654 345678999
Q ss_pred HHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCC
Q 024886 202 PRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDV 247 (261)
Q Consensus 202 ~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~ 247 (261)
|.+|..+++.+|++++++++|||+ .+|+++|+++|+.++++.++.
T Consensus 106 p~~~~~~~~~l~~~~~~~~~VgDs-~~Di~~A~~aG~~~i~v~~g~ 150 (181)
T PRK08942 106 PGMLLSIAERLNIDLAGSPMVGDS-LRDLQAAAAAGVTPVLVRTGK 150 (181)
T ss_pred HHHHHHHHHHcCCChhhEEEEeCC-HHHHHHHHHCCCeEEEEcCCC
Confidence 999999999999999999999999 799999999999999887664
No 51
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.86 E-value=1.3e-20 Score=137.45 Aligned_cols=97 Identities=29% Similarity=0.476 Sum_probs=84.6
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCc--------hH-HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHc-C
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFD--------TR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQM-S 213 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~--------~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l-~ 213 (261)
.++||+.++|+.|++.|++++++||+. .. +...++.+|+. ++.++.+. +..||++++|+.+++++ +
T Consensus 25 ~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~--~~~KP~~~~~~~~~~~~~~ 100 (132)
T TIGR01662 25 ILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP--IDVLYACP--HCRKPKPGMFLEALKRFNE 100 (132)
T ss_pred eeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC--EEEEEECC--CCCCCChHHHHHHHHHcCC
Confidence 789999999999999999999999987 55 68889999986 34444444 57899999999999999 5
Q ss_pred CCCCcEEEEcCCchhhhHHHHhCCCeEEEEC
Q 024886 214 VEASRTVHIGDDEKADKQGANSLGIDCWLWG 244 (261)
Q Consensus 214 ~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~ 244 (261)
++|++++||||+...|+.+|+++|+.+|++.
T Consensus 101 ~~~~~~v~IGD~~~~Di~~A~~~Gi~~i~~~ 131 (132)
T TIGR01662 101 IDPEESVYVGDQDLTDLQAAKRAGLAFILVA 131 (132)
T ss_pred CChhheEEEcCCCcccHHHHHHCCCeEEEee
Confidence 9999999999932899999999999999875
No 52
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=99.85 E-value=6.3e-20 Score=143.85 Aligned_cols=128 Identities=15% Similarity=0.107 Sum_probs=99.0
Q ss_pred HHHHhcCCC-chHHHHH-HHHHHhhCC-ceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhc---CcccccceE
Q 024886 117 VVSEATGCT-NDDYFEE-VYEYYAKGE-AWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDL---NVIDLFDAV 189 (261)
Q Consensus 117 ~~~~~~~~~-~~~~~~~-~~~~~~~~~-~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~---gl~~~f~~i 189 (261)
+........ .+.+.-. +.+.|.... ..+++||+.++|+.|+++|++++|+||++.. ++.+++.. ++.++|+.+
T Consensus 65 ~~~~d~k~~~lk~lqg~iw~~~Y~~~~~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f~~~ 144 (220)
T TIGR01691 65 EMDKDRKATPLKTLQGLIWRQGYESGELTSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYFSGY 144 (220)
T ss_pred HHHcCCCcchHHHHHHHHHHHHHhcCCcccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhhhcceE
Confidence 333333333 4444444 344454422 2479999999999999999999999999877 56666664 677778877
Q ss_pred EecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCC
Q 024886 190 VISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDV 247 (261)
Q Consensus 190 ~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~ 247 (261)
+... . ..||+++.|..+++++|++|++++||||+ ..|+++|+++|+.++++.++.
T Consensus 145 fd~~-~-g~KP~p~~y~~i~~~lgv~p~e~lfVgDs-~~Di~AA~~AG~~ti~v~r~g 199 (220)
T TIGR01691 145 FDTT-V-GLKTEAQSYVKIAGQLGSPPREILFLSDI-INELDAARKAGLHTGQLVRPG 199 (220)
T ss_pred EEeC-c-ccCCCHHHHHHHHHHhCcChhHEEEEeCC-HHHHHHHHHcCCEEEEEECCC
Confidence 7532 3 37999999999999999999999999999 899999999999999886654
No 53
>PLN02954 phosphoserine phosphatase
Probab=99.84 E-value=3.8e-19 Score=141.44 Aligned_cols=170 Identities=17% Similarity=0.155 Sum_probs=111.7
Q ss_pred ccccEEEEccCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCccccccCCCChhHHHHHHHHhcCCCch
Q 024886 48 KAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTND 127 (261)
Q Consensus 48 ~~~k~iifD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (261)
+.+|+|+||+||||+++. .+..+++++|......+.... ..+. ...........+.... . .
T Consensus 10 ~~~k~viFDfDGTL~~~~-----~~~~~~~~~g~~~~~~~~~~~---~~~g--------~~~~~~~~~~~~~~~~-~-~- 70 (224)
T PLN02954 10 RSADAVCFDVDSTVCVDE-----GIDELAEFCGAGEAVAEWTAK---AMGG--------SVPFEEALAARLSLFK-P-S- 70 (224)
T ss_pred ccCCEEEEeCCCcccchH-----HHHHHHHHcCChHHHHHHHHH---HHCC--------CCCHHHHHHHHHHHcC-C-C-
Confidence 468999999999999973 467778888764222222221 1110 1111222222222211 1 1
Q ss_pred HHHHHHHHHHhhCCceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcc--cccceEEec--------CC--
Q 024886 128 DYFEEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVI--DLFDAVVIS--------SE-- 194 (261)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~--~~f~~i~~~--------~~-- 194 (261)
.+.+.+.+... ...++||+.++|+.|+++|++++|+|++... ++.+++.+|+. .+|+..+.. ..
T Consensus 71 --~~~~~~~~~~~-~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~ 147 (224)
T PLN02954 71 --LSQVEEFLEKR-PPRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQILFGDSGEYAGFDEN 147 (224)
T ss_pred --HHHHHHHHHHc-cCCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCC
Confidence 12223333221 2368999999999999999999999999887 78999999986 355432111 11
Q ss_pred --CCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEE
Q 024886 195 --VGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWL 242 (261)
Q Consensus 195 --~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~ 242 (261)
....++++..+..+++.+|. +++++|||+ .+|+++|+.+|+..++
T Consensus 148 ~~~~~~~~K~~~i~~~~~~~~~--~~~i~iGDs-~~Di~aa~~~~~~~~~ 194 (224)
T PLN02954 148 EPTSRSGGKAEAVQHIKKKHGY--KTMVMIGDG-ATDLEARKPGGADLFI 194 (224)
T ss_pred CcccCCccHHHHHHHHHHHcCC--CceEEEeCC-HHHHHhhhcCCCCEEE
Confidence 12356788899999999885 689999999 8999999998887654
No 54
>PRK06769 hypothetical protein; Validated
Probab=99.84 E-value=5.9e-20 Score=139.73 Aligned_cols=104 Identities=18% Similarity=0.206 Sum_probs=86.3
Q ss_pred eeeCccHHHHHHHHHHCCCeEEEEeCCch---------HHHHHHHhcCcccccceEE-ecCCCCCCCCCHHHHHHHHHHc
Q 024886 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDT---------RLRKLLKDLNVIDLFDAVV-ISSEVGCEKPDPRIFKAALDQM 212 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g~~i~i~T~~~~---------~~~~~l~~~gl~~~f~~i~-~~~~~~~~Kp~~~~~~~~~~~l 212 (261)
..++||+.++|+.|+++|++++|+||... .....++.+|+..+|.... ++++.+..||+|++|..+++++
T Consensus 27 ~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~l 106 (173)
T PRK06769 27 FTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFDDIYLCPHKHGDGCECRKPSTGMLLQAAEKH 106 (173)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcCEEEECcCCCCCCCCCCCCCHHHHHHHHHHc
Confidence 37899999999999999999999999763 1233466677655443332 3455678899999999999999
Q ss_pred CCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCC
Q 024886 213 SVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDV 247 (261)
Q Consensus 213 ~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~ 247 (261)
|++|++|+||||+ ..|+++|+++|+.+|++.++.
T Consensus 107 ~~~p~~~i~IGD~-~~Di~aA~~aGi~~i~v~~g~ 140 (173)
T PRK06769 107 GLDLTQCAVIGDR-WTDIVAAAKVNATTILVRTGA 140 (173)
T ss_pred CCCHHHeEEEcCC-HHHHHHHHHCCCeEEEEecCC
Confidence 9999999999999 799999999999999987754
No 55
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.84 E-value=1e-20 Score=142.41 Aligned_cols=105 Identities=15% Similarity=0.137 Sum_probs=94.4
Q ss_pred eeeCccHHHHHHHHHHCCCeEEEEeCC-chH-HHHHHHhcCcc---------cccceEEecCCCCCCCCCHHHHHHHHHH
Q 024886 143 WHLPHGAYQSILLLKDAGVKVAVVSNF-DTR-LRKLLKDLNVI---------DLFDAVVISSEVGCEKPDPRIFKAALDQ 211 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g~~i~i~T~~-~~~-~~~~l~~~gl~---------~~f~~i~~~~~~~~~Kp~~~~~~~~~~~ 211 (261)
..++||+.++|+.|+++|++++|+||+ ... ++.+++.+|+. .+|+.+++++.....||.+.+++.+.+.
T Consensus 44 ~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~~~~ 123 (174)
T TIGR01685 44 VTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKVNKV 123 (174)
T ss_pred EEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHhhhc
Confidence 589999999999999999999999987 665 68899999998 9999999998876677777788888888
Q ss_pred c--CCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCC
Q 024886 212 M--SVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVK 248 (261)
Q Consensus 212 l--~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~ 248 (261)
+ |++|++|+||||+ ..|+++|+++|+.++++..+..
T Consensus 124 ~~~gl~p~e~l~VgDs-~~di~aA~~aGi~~i~v~~g~~ 161 (174)
T TIGR01685 124 DPSVLKPAQILFFDDR-TDNVREVWGYGVTSCYCPSGMD 161 (174)
T ss_pred ccCCCCHHHeEEEcCh-hHhHHHHHHhCCEEEEcCCCcc
Confidence 7 8999999999999 8999999999999999977754
No 56
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=99.84 E-value=1.2e-19 Score=138.76 Aligned_cols=103 Identities=18% Similarity=0.323 Sum_probs=85.8
Q ss_pred eeeCccHHHHHHHHHHCCCeEEEEeCCch---------------H-HHHHHHhcCcccccceEEec-----------CCC
Q 024886 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDT---------------R-LRKLLKDLNVIDLFDAVVIS-----------SEV 195 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g~~i~i~T~~~~---------------~-~~~~l~~~gl~~~f~~i~~~-----------~~~ 195 (261)
+.++||+.++|+.|+++|++++|+||.+. . +...+..+++. |+.++.+ ++.
T Consensus 25 ~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~i~~~~~~~~~~~~~~~~~ 102 (176)
T TIGR00213 25 FEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVD--LDGIYYCPHHPEGVEEFRQVC 102 (176)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCC--ccEEEECCCCCcccccccCCC
Confidence 48899999999999999999999999874 1 23456666665 6776653 244
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeE-EEECCCCC
Q 024886 196 GCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDC-WLWGIDVK 248 (261)
Q Consensus 196 ~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~-i~v~~~~~ 248 (261)
...||+|++|..+++++|+++++++||||+ ..|+++|+++|+.+ +++..+..
T Consensus 103 ~~~KP~p~~~~~a~~~~~~~~~~~v~VGDs-~~Di~aA~~aG~~~~i~v~~g~~ 155 (176)
T TIGR00213 103 DCRKPKPGMLLQARKELHIDMAQSYMVGDK-LEDMQAGVAAKVKTNVLVRTGKP 155 (176)
T ss_pred CCCCCCHHHHHHHHHHcCcChhhEEEEcCC-HHHHHHHHHCCCcEEEEEecCCc
Confidence 568999999999999999999999999998 89999999999998 68777643
No 57
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.83 E-value=3.9e-19 Score=147.04 Aligned_cols=181 Identities=18% Similarity=0.180 Sum_probs=119.4
Q ss_pred ccccEEEEccCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCccccccCCCChhHHHHHHHHhcCCCch
Q 024886 48 KAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTND 127 (261)
Q Consensus 48 ~~~k~iifD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (261)
..+++|+|||||||+.. +.+.++++..|............. . ............+....+ ...
T Consensus 108 ~~~~LvvfDmDGTLI~~-----e~i~eia~~~g~~~~v~~it~~~m---~--------Geldf~esl~~rv~~l~g-~~~ 170 (322)
T PRK11133 108 RTPGLLVMDMDSTAIQI-----ECIDEIAKLAGTGEEVAEVTERAM---R--------GELDFEASLRQRVATLKG-ADA 170 (322)
T ss_pred cCCCEEEEECCCCCcch-----HHHHHHHHHhCCchHHHHHHHHHH---c--------CCcCHHHHHHHHHHHhCC-CCH
Confidence 36799999999999943 467888888877533322222111 0 111111111111111111 112
Q ss_pred HHHHHHHHHHhhCCceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccc-------eEEecC---CCC
Q 024886 128 DYFEEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFD-------AVVISS---EVG 196 (261)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~-------~i~~~~---~~~ 196 (261)
...+.+. . ..+++||+.++++.|++.|++++|+|++... .+.+++.+|+...+. ..+... ...
T Consensus 171 ~il~~v~----~--~l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~~~an~lei~dg~ltg~v~g~iv 244 (322)
T PRK11133 171 NILQQVR----E--NLPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDAAVANELEIMDGKLTGNVLGDIV 244 (322)
T ss_pred HHHHHHH----H--hCCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCeEEEeEEEEECCEEEeEecCccC
Confidence 2222222 1 1478999999999999999999999998876 577888888865442 222221 223
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCChHHHH
Q 024886 197 CEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFSDVQ 254 (261)
Q Consensus 197 ~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~ 254 (261)
.+|||++.++.+++++|++++++++|||+ .+|+.|++.+|++.++ ++.+.+++.+
T Consensus 245 ~~k~K~~~L~~la~~lgi~~~qtIaVGDg-~NDl~m~~~AGlgiA~--nAkp~Vk~~A 299 (322)
T PRK11133 245 DAQYKADTLTRLAQEYEIPLAQTVAIGDG-ANDLPMIKAAGLGIAY--HAKPKVNEQA 299 (322)
T ss_pred CcccHHHHHHHHHHHcCCChhhEEEEECC-HHHHHHHHHCCCeEEe--CCCHHHHhhC
Confidence 46899999999999999999999999999 7999999999998865 5544444443
No 58
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.83 E-value=4.6e-19 Score=133.33 Aligned_cols=181 Identities=18% Similarity=0.261 Sum_probs=125.7
Q ss_pred cccEEEEccCCccccccccHHHHHH----HHH-HHhCCCCCHHH-HHHHHHHHhcCCCccccccCCCChhHHHHHHHHhc
Q 024886 49 AYDAVLLDAGGTLLQLAEPVEETYA----SIA-RKYGLNVDSAD-IKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEAT 122 (261)
Q Consensus 49 ~~k~iifD~DGTL~d~~~~~~~~~~----~~~-~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (261)
..++++||+|+||+.....+..+.+ +++ .++|++-.... ....+.+.++.. ...+.....
T Consensus 14 ~~~~l~FDiDdtLYp~St~i~~~~~~nI~~f~~eklgi~~e~a~~L~~~~yk~YG~t--------------~aGL~~~~~ 79 (244)
T KOG3109|consen 14 NYKCLFFDIDDTLYPLSTGIQLMMRNNIQEFFVEKLGISEEEAEELRESLYKEYGLT--------------MAGLKAVGY 79 (244)
T ss_pred cceEEEEecccccccCchhHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHHHHhHH--------------HHHHHHhcc
Confidence 6899999999999998777766555 333 34676532221 112222222211 011111111
Q ss_pred CCCchHHHHHHHHHHhhCCceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCC-----
Q 024886 123 GCTNDDYFEEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVG----- 196 (261)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~----- 196 (261)
.....++...+..... ...+++.+-.+++|-.|++. +.+++||++.. +..+|+.+|+.+.|+++++.+-..
T Consensus 80 ~~d~deY~~~V~~~LP-lq~LkPD~~LRnlLL~l~~r--~k~~FTNa~k~HA~r~Lk~LGieDcFegii~~e~~np~~~~ 156 (244)
T KOG3109|consen 80 IFDADEYHRFVHGRLP-LQDLKPDPVLRNLLLSLKKR--RKWIFTNAYKVHAIRILKKLGIEDCFEGIICFETLNPIEKT 156 (244)
T ss_pred cCCHHHHHHHhhccCc-HhhcCCCHHHHHHHHhCccc--cEEEecCCcHHHHHHHHHHhChHHhccceeEeeccCCCCCc
Confidence 1112232222222111 11257778888999888876 38999999987 799999999999999999987544
Q ss_pred -CCCCCHHHHHHHHHHcCCC-CCcEEEEcCCchhhhHHHHhCCCeEEEECCCC
Q 024886 197 -CEKPDPRIFKAALDQMSVE-ASRTVHIGDDEKADKQGANSLGIDCWLWGIDV 247 (261)
Q Consensus 197 -~~Kp~~~~~~~~~~~l~~~-~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~ 247 (261)
.+||.+++|+.+.+..|++ |.+++||.|| .++|+.|++.||.+++++...
T Consensus 157 ~vcKP~~~afE~a~k~agi~~p~~t~FfDDS-~~NI~~ak~vGl~tvlv~~~~ 208 (244)
T KOG3109|consen 157 VVCKPSEEAFEKAMKVAGIDSPRNTYFFDDS-ERNIQTAKEVGLKTVLVGREH 208 (244)
T ss_pred eeecCCHHHHHHHHHHhCCCCcCceEEEcCc-hhhHHHHHhccceeEEEEeee
Confidence 6899999999999999998 9999999998 899999999999999886653
No 59
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.82 E-value=1.2e-19 Score=136.68 Aligned_cols=96 Identities=21% Similarity=0.294 Sum_probs=83.0
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-------------HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHH
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-------------LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALD 210 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-------------~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~ 210 (261)
.++||+.++|+.|++.|++++|+||.+.. +..+++.+|+. ++.+++++.....||+++++..+++
T Consensus 42 ~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~--~~~ii~~~~~~~~KP~p~~~~~~~~ 119 (166)
T TIGR01664 42 FLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVP--IQVLAATHAGLYRKPMTGMWEYLQS 119 (166)
T ss_pred EecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCC--EEEEEecCCCCCCCCccHHHHHHHH
Confidence 47899999999999999999999997642 46788999985 3666777666678999999999999
Q ss_pred HcC--CCCCcEEEEcCCc-------hhhhHHHHhCCCeEE
Q 024886 211 QMS--VEASRTVHIGDDE-------KADKQGANSLGIDCW 241 (261)
Q Consensus 211 ~l~--~~~~~~l~iGD~~-------~~Di~~a~~~G~~~i 241 (261)
++| +++++++||||+. ..|+++|+++|+.++
T Consensus 120 ~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~~~ 159 (166)
T TIGR01664 120 QYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLEFK 159 (166)
T ss_pred HcCCCCCchhcEEEECCCCCCCCCchhHHHHHHHCCCCcC
Confidence 999 9999999999982 269999999999985
No 60
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.81 E-value=8.4e-19 Score=138.52 Aligned_cols=95 Identities=15% Similarity=0.120 Sum_probs=80.9
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCC----chH-HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCc
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNF----DTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASR 218 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~----~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~ 218 (261)
.+.+++.++|+.|+++|++++++||. ... .+.+++.+|+..+|+.+++++.....||++. ..++++++
T Consensus 114 ~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~f~~i~~~d~~~~~Kp~~~---~~l~~~~i---- 186 (237)
T TIGR01672 114 IPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAMNPVIFAGDKPGQYQYTKT---QWIQDKNI---- 186 (237)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchheeEEECCCCCCCCCCCHH---HHHHhCCC----
Confidence 66777999999999999999999997 444 5778889999999999999888777788764 35567776
Q ss_pred EEEEcCCchhhhHHHHhCCCeEEEECCC
Q 024886 219 TVHIGDDEKADKQGANSLGIDCWLWGID 246 (261)
Q Consensus 219 ~l~iGD~~~~Di~~a~~~G~~~i~v~~~ 246 (261)
++||||+ .+|+.+|+++|+.++.+..+
T Consensus 187 ~i~vGDs-~~DI~aAk~AGi~~I~V~~g 213 (237)
T TIGR01672 187 RIHYGDS-DNDITAAKEAGARGIRILRA 213 (237)
T ss_pred eEEEeCC-HHHHHHHHHCCCCEEEEEec
Confidence 7999999 89999999999999887655
No 61
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.81 E-value=8.6e-19 Score=138.75 Aligned_cols=167 Identities=15% Similarity=0.137 Sum_probs=108.8
Q ss_pred ccEEEEccCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCccccccCCCChhHHHHHHHHhcCCCchHH
Q 024886 50 YDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTNDDY 129 (261)
Q Consensus 50 ~k~iifD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (261)
.++|+||+||||++.+... .++++++. ...+++...+. . ......+..+..+...... .
T Consensus 3 ~~~vifDfDgTi~~~d~~~-----~~~~~~~~-~~~~~i~~~~~---~--------g~~~~~~~~~~~~~~l~~~----~ 61 (219)
T PRK09552 3 SIQIFCDFDGTITNNDNII-----AIMKKFAP-PEWEELKDDIL---S--------QELSIQEGVGQMFQLLPSN----L 61 (219)
T ss_pred CcEEEEcCCCCCCcchhhH-----HHHHHhCH-HHHHHHHHHHH---h--------CCcCHHHHHHHHHHhCCCC----c
Confidence 4589999999999987543 24444432 11222222111 0 1111122233333332211 1
Q ss_pred HHHHHHHHhhCCceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCccc--cc--ceEEecCCCCCCCCCHHH
Q 024886 130 FEEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVID--LF--DAVVISSEVGCEKPDPRI 204 (261)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~--~f--~~i~~~~~~~~~Kp~~~~ 204 (261)
.+++.+.+... ..++||+.++|+.|+++|++++|+|++... +..+++.+ +.. .+ +..+..+.....||+|..
T Consensus 62 ~~~~~~~~~~~--~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~ 138 (219)
T PRK09552 62 KEEIIQFLLET--AEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL-IPKEQIYCNGSDFSGEYITITWPHPCD 138 (219)
T ss_pred hHHHHHHHHhC--CCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh-CCcCcEEEeEEEecCCeeEEeccCCcc
Confidence 23444444332 489999999999999999999999999887 78889887 543 22 334455555666777653
Q ss_pred ----------HHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEE
Q 024886 205 ----------FKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCW 241 (261)
Q Consensus 205 ----------~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i 241 (261)
...++++++..+.++++|||+ .+|+.+|+.+|+..+
T Consensus 139 ~~~~~~~~~~K~~~l~~~~~~~~~~i~iGDs-~~Di~aa~~Ag~~~a 184 (219)
T PRK09552 139 EHCQNHCGCCKPSLIRKLSDTNDFHIVIGDS-ITDLEAAKQADKVFA 184 (219)
T ss_pred ccccccCCCchHHHHHHhccCCCCEEEEeCC-HHHHHHHHHCCccee
Confidence 357889999999999999999 899999999999443
No 62
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.79 E-value=1.3e-18 Score=127.19 Aligned_cols=100 Identities=29% Similarity=0.400 Sum_probs=90.7
Q ss_pred eeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCC----------------CCCHHHH
Q 024886 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCE----------------KPDPRIF 205 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~----------------Kp~~~~~ 205 (261)
..+++++.++++.|+++|++++++|++... +..+++.+|+..+++.+++++..... ||++..+
T Consensus 23 ~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (139)
T cd01427 23 LELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPDKL 102 (139)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCchhhhheeccchhhhhcccccccccccccccCCCCHHHH
Confidence 488999999999999999999999998877 78999999998888988887765544 9999999
Q ss_pred HHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEE
Q 024886 206 KAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLW 243 (261)
Q Consensus 206 ~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v 243 (261)
..+.+.++.+++++++|||+ .+|+++++++|+.++++
T Consensus 103 ~~~~~~~~~~~~~~~~igD~-~~d~~~~~~~g~~~i~v 139 (139)
T cd01427 103 LAALKLLGVDPEEVLMVGDS-LNDIEMAKAAGGLGVAV 139 (139)
T ss_pred HHHHHHcCCChhhEEEeCCC-HHHHHHHHHcCCceeeC
Confidence 99999999999999999999 79999999999998764
No 63
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=99.78 E-value=7e-18 Score=140.37 Aligned_cols=115 Identities=22% Similarity=0.427 Sum_probs=99.3
Q ss_pred eeeCccHHHHHHHHHHCCCeEEEEeCCc---------------hH-HHHHHHhcCcccccceEEec-----CCCCCCCCC
Q 024886 143 WHLPHGAYQSILLLKDAGVKVAVVSNFD---------------TR-LRKLLKDLNVIDLFDAVVIS-----SEVGCEKPD 201 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g~~i~i~T~~~---------------~~-~~~~l~~~gl~~~f~~i~~~-----~~~~~~Kp~ 201 (261)
..++||+.++|+.|+++|++++|+||.+ .. +..+++.+|+. |+.++.+ ++.+..||+
T Consensus 29 ~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~gl~--fd~i~i~~~~~sd~~~~rKP~ 106 (354)
T PRK05446 29 LAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQGIK--FDEVLICPHFPEDNCSCRKPK 106 (354)
T ss_pred ceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHHcCCc--eeeEEEeCCcCcccCCCCCCC
Confidence 3899999999999999999999999951 22 45677888874 6666543 556788999
Q ss_pred HHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCChHHHHHhhhcc
Q 024886 202 PRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFSDVQNRILIT 260 (261)
Q Consensus 202 ~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~~l~~~ 260 (261)
+.++..+++.+++++++++||||+ ..|+++|+++|+.+++++...-+|+++++.|..+
T Consensus 107 p~~l~~a~~~l~v~~~~svmIGDs-~sDi~aAk~aGi~~I~v~~~~~~~~~i~~~l~~~ 164 (354)
T PRK05446 107 TGLVEEYLAEGAIDLANSYVIGDR-ETDVQLAENMGIKGIRYARETLNWDAIAEQLTKR 164 (354)
T ss_pred HHHHHHHHHHcCCCcccEEEEcCC-HHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhcC
Confidence 999999999999999999999998 8999999999999999999899999999887643
No 64
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=99.76 E-value=1.1e-17 Score=126.89 Aligned_cols=101 Identities=25% Similarity=0.171 Sum_probs=84.9
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCc-hH-HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEE
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFD-TR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVH 221 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~-~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~ 221 (261)
.++||+.++|+.|++.|++++++||++ .. +..+++.+|+..+ .+..||++++|..+++++|++++++++
T Consensus 43 ~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~~~---------~~~~KP~p~~~~~~l~~~~~~~~~~l~ 113 (170)
T TIGR01668 43 EAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIPVL---------PHAVKPPGCAFRRAHPEMGLTSEQVAV 113 (170)
T ss_pred CcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCEEE---------cCCCCCChHHHHHHHHHcCCCHHHEEE
Confidence 668899999999999999999999988 45 5666677776422 134699999999999999999999999
Q ss_pred EcCCchhhhHHHHhCCCeEEEECCCCCChHHH
Q 024886 222 IGDDEKADKQGANSLGIDCWLWGIDVKTFSDV 253 (261)
Q Consensus 222 iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~el 253 (261)
|||+...|+++|+++|+.++++..+..+.+.+
T Consensus 114 IGDs~~~Di~aA~~aGi~~i~v~~g~~~~~~~ 145 (170)
T TIGR01668 114 VGDRLFTDVMGGNRNGSYTILVEPLVHPDQWF 145 (170)
T ss_pred ECCcchHHHHHHHHcCCeEEEEccCcCCcccc
Confidence 99994379999999999999998886554433
No 65
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.76 E-value=4e-17 Score=127.99 Aligned_cols=97 Identities=18% Similarity=0.182 Sum_probs=76.3
Q ss_pred eeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCC----CCCCCCCHHHHHHHHHHcCCCCC
Q 024886 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSE----VGCEKPDPRIFKAALDQMSVEAS 217 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~----~~~~Kp~~~~~~~~~~~l~~~~~ 217 (261)
.+++||+.++|+.|++. ++++|+||+... ++.+++.+|+..+|+..+..++ .+..++.|.....+++.++..++
T Consensus 67 ~~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~~~~ 145 (205)
T PRK13582 67 LDPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLMRQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVKALKSLGY 145 (205)
T ss_pred CCCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHHHHcCCchhhcceEEECCCCeEECccccccchHHHHHHHHHHhCC
Confidence 47899999999999999 999999999988 7889999999888865443321 12223334455666677777789
Q ss_pred cEEEEcCCchhhhHHHHhCCCeEE
Q 024886 218 RTVHIGDDEKADKQGANSLGIDCW 241 (261)
Q Consensus 218 ~~l~iGD~~~~Di~~a~~~G~~~i 241 (261)
++++|||+ .+|+++++.+|++..
T Consensus 146 ~~v~iGDs-~~D~~~~~aa~~~v~ 168 (205)
T PRK13582 146 RVIAAGDS-YNDTTMLGEADAGIL 168 (205)
T ss_pred eEEEEeCC-HHHHHHHHhCCCCEE
Confidence 99999999 899999999998664
No 66
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=99.75 E-value=5.3e-17 Score=127.04 Aligned_cols=122 Identities=16% Similarity=0.091 Sum_probs=92.0
Q ss_pred hcCCCchHHHHHHHHHHhhCCceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccce-EEecCC----
Q 024886 121 ATGCTNDDYFEEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDA-VVISSE---- 194 (261)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~-i~~~~~---- 194 (261)
..+...+++.....+.+...-...++|++.++++.++++|++++|+|++... ++.+++.+|+..+|.. +...++
T Consensus 64 ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~~~~~~l~~~~~g~~~ 143 (202)
T TIGR01490 64 LAGLLEEDVRAIVEEFVNQKIESILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDNAIGTRLEESEDGIYT 143 (202)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcceEecceEEcCCCEEe
Confidence 3455555554444444433222478999999999999999999999999887 7889999999877754 222111
Q ss_pred ------CCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEE
Q 024886 195 ------VGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLW 243 (261)
Q Consensus 195 ------~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v 243 (261)
...++++...++.++++.+++++++++|||+ .+|+++++.+|...+..
T Consensus 144 g~~~~~~~~g~~K~~~l~~~~~~~~~~~~~~~~~gDs-~~D~~~~~~a~~~~~v~ 197 (202)
T TIGR01490 144 GNIDGNNCKGEGKVHALAELLAEEQIDLKDSYAYGDS-ISDLPLLSLVGHPYVVN 197 (202)
T ss_pred CCccCCCCCChHHHHHHHHHHHHcCCCHHHcEeeeCC-cccHHHHHhCCCcEEeC
Confidence 1234667778999999999999999999999 79999999999887544
No 67
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.75 E-value=1.1e-16 Score=123.81 Aligned_cols=93 Identities=16% Similarity=0.224 Sum_probs=78.3
Q ss_pred eeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCC--------------------CCCCCCC
Q 024886 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSE--------------------VGCEKPD 201 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~--------------------~~~~Kp~ 201 (261)
.+++||+.++++.|++.|++++|+||+... ++.+++.+|+..+|+.+++++. ...+.+|
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~K 150 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCGCCK 150 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChhheeEEeccCceECCCCcEEEecCCCCccCcCCCCCCH
Confidence 488999999999999999999999998877 7889999999999999987532 1233456
Q ss_pred HHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCe
Q 024886 202 PRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGID 239 (261)
Q Consensus 202 ~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~ 239 (261)
+..++.+.+.+ ++++++|||+ .+|+.+|+.+++-
T Consensus 151 ~~~~~~~~~~~---~~~~i~iGD~-~~D~~aa~~~d~~ 184 (188)
T TIGR01489 151 GKVIHKLSEPK---YQHIIYIGDG-VTDVCPAKLSDVV 184 (188)
T ss_pred HHHHHHHHhhc---CceEEEECCC-cchhchHhcCCcc
Confidence 77888887765 7999999999 8999999998754
No 68
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=99.74 E-value=1e-17 Score=137.20 Aligned_cols=110 Identities=19% Similarity=0.232 Sum_probs=90.0
Q ss_pred CccHHHHHHHHHHCCCeEEEEeCCchH-H-HHHHHhcCcccccceEEe---cCCCCCCCCCHHHHHHHHHHcCCCCCcEE
Q 024886 146 PHGAYQSILLLKDAGVKVAVVSNFDTR-L-RKLLKDLNVIDLFDAVVI---SSEVGCEKPDPRIFKAALDQMSVEASRTV 220 (261)
Q Consensus 146 ~~g~~~~l~~L~~~g~~i~i~T~~~~~-~-~~~l~~~gl~~~f~~i~~---~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l 220 (261)
|+++.++++.|++.|. ++|+||.+.. . ...+...|...+|+.+.. .+....+||+|.+|..+++++|++|++++
T Consensus 145 y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~~~~~g~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~~~~~~~l 223 (279)
T TIGR01452 145 YAKLREACAHLREPGC-LFVATNRDPWHPLSDGSRTPGTGSLVAAIETASGRQPLVVGKPSPYMFECITENFSIDPARTL 223 (279)
T ss_pred HHHHHHHHHHHhcCCC-EEEEeCCCCCCCCcCCCcccChHHHHHHHHHHhCCceeccCCCCHHHHHHHHHHhCCChhhEE
Confidence 6889999999998886 7899997754 2 223344566666665543 34455789999999999999999999999
Q ss_pred EEcCCchhhhHHHHhCCCeEEEECCCCCChHHHHHh
Q 024886 221 HIGDDEKADKQGANSLGIDCWLWGIDVKTFSDVQNR 256 (261)
Q Consensus 221 ~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~~ 256 (261)
||||+...||++|+++|+.+++|.+|..+.+++.+.
T Consensus 224 mIGD~~~tDI~~A~~aGi~si~V~~G~~~~~~l~~~ 259 (279)
T TIGR01452 224 MVGDRLETDILFGHRCGMTTVLVLSGVSRLEEAQEY 259 (279)
T ss_pred EECCChHHHHHHHHHcCCcEEEECCCCCCHHHHHhh
Confidence 999995699999999999999999999998888754
No 69
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.73 E-value=2.3e-16 Score=123.29 Aligned_cols=173 Identities=22% Similarity=0.246 Sum_probs=119.9
Q ss_pred ccccEEEEccCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCccccccCCCChhHHHHHHHHhcCCCch
Q 024886 48 KAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTND 127 (261)
Q Consensus 48 ~~~k~iifD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (261)
+++++++|||||||++ ...+..+.+..|... +....-..... +........+..+....+.+..
T Consensus 3 ~~~~L~vFD~D~TLi~-----~~~~~~~~~~~g~~~---~v~~~t~~~~~--------~~~~~~~~~~~~v~~l~g~~~~ 66 (212)
T COG0560 3 RMKKLAVFDLDGTLIN-----AELIDELARGAGVGE---EVLAITERAMR--------GELDFEESLRLRVALLKGLPVE 66 (212)
T ss_pred CccceEEEecccchhh-----HHHHHHHHHHhCCHH---HHHHHHHHHhc--------ccccHHHHHHHHHHHhCCCCHH
Confidence 3568999999999998 345666666666542 11111111111 0011122333333444444333
Q ss_pred HHHHHHHHHHhhCCceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCC---CC-------
Q 024886 128 DYFEEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSE---VG------- 196 (261)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~---~~------- 196 (261)
..+++.+.+ .+++||+.++++.|++.|++++|+|++... ++.+.+.+|++..+...+..++ .+
T Consensus 67 -~v~~~~~~~-----~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~ 140 (212)
T COG0560 67 -VLEEVREEF-----LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYVVANELEIDDGKLTGRVVGPIC 140 (212)
T ss_pred -HHHHHHHhc-----CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCchheeeEEEEeCCEEeceeeeeec
Confidence 334444433 488999999999999999999999999988 6999999999877765555543 11
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEE
Q 024886 197 CEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLW 243 (261)
Q Consensus 197 ~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v 243 (261)
.++.+......+++.+|++++++++|||+ .||+.|...+|.+.+.-
T Consensus 141 ~~~~K~~~l~~~~~~~g~~~~~~~a~gDs-~nDlpml~~ag~~ia~n 186 (212)
T COG0560 141 DGEGKAKALRELAAELGIPLEETVAYGDS-ANDLPMLEAAGLPIAVN 186 (212)
T ss_pred CcchHHHHHHHHHHHcCCCHHHeEEEcCc-hhhHHHHHhCCCCeEeC
Confidence 23446678899999999999999999999 89999999999887543
No 70
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.73 E-value=8.5e-16 Score=119.52 Aligned_cols=173 Identities=18% Similarity=0.207 Sum_probs=110.5
Q ss_pred cEEEEccCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCccccccCCCChhHHHHHHHHh--cCCCchH
Q 024886 51 DAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEA--TGCTNDD 128 (261)
Q Consensus 51 k~iifD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 128 (261)
.+++||+||||++. .|.+++.+.|.. ...... .. ......+....+.-. .+.....
T Consensus 2 ~la~FDlD~TLi~~------~w~~~~~~~g~~--~~~~~~-----~~---------~~~~~~~~~~r~~ll~~~g~~~~~ 59 (203)
T TIGR02137 2 EIACLDLEGVLVPE------IWIAFAEKTGID--ALKATT-----RD---------IPDYDVLMKQRLRILDEHGLKLGD 59 (203)
T ss_pred eEEEEeCCcccHHH------HHHHHHHHcCCc--HHHHHh-----cC---------CcCHHHHHHHHHHHHHHCCCCHHH
Confidence 56999999999974 488888888853 111110 00 000111111111111 1333333
Q ss_pred HHHHHHHHHhhCCceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceE--------EecCCCCCCC
Q 024886 129 YFEEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAV--------VISSEVGCEK 199 (261)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i--------~~~~~~~~~K 199 (261)
+ .+.... .+++||+.++++.|++.+ +++|+|++... +..+++.+|+..+|... ++.... ..+
T Consensus 60 i----~~~~~~---i~l~pga~ell~~lk~~~-~~~IVS~~~~~~~~~il~~lgi~~~~an~l~~~~~g~~tG~~~-~~~ 130 (203)
T TIGR02137 60 I----QEVIAT---LKPLEGAVEFVDWLRERF-QVVILSDTFYEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQL-RQK 130 (203)
T ss_pred H----HHHHHh---CCCCccHHHHHHHHHhCC-eEEEEeCChHHHHHHHHHHcCCchhhceeeEEecCCeeECeee-cCc
Confidence 3 222222 478999999999999975 99999999888 78999999998877522 211111 234
Q ss_pred CCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCC-----------CCChHHHHHhhh
Q 024886 200 PDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGID-----------VKTFSDVQNRIL 258 (261)
Q Consensus 200 p~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~-----------~~~~~el~~~l~ 258 (261)
+.+..+...++..+. ++++|||+ .+|+.+++.+|.+.+....+ +.+..||.+.+.
T Consensus 131 ~~K~~~l~~l~~~~~---~~v~vGDs-~nDl~ml~~Ag~~ia~~ak~~~~~~~~~~~~~~~~~~~~~~~~ 196 (203)
T TIGR02137 131 DPKRQSVIAFKSLYY---RVIAAGDS-YNDTTMLSEAHAGILFHAPENVIREFPQFPAVHTYEDLKREFL 196 (203)
T ss_pred chHHHHHHHHHhhCC---CEEEEeCC-HHHHHHHHhCCCCEEecCCHHHHHhCCCCCcccCHHHHHHHHH
Confidence 444444444456553 79999999 89999999999998766544 566777776653
No 71
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=99.72 E-value=5.4e-18 Score=137.01 Aligned_cols=104 Identities=23% Similarity=0.198 Sum_probs=87.3
Q ss_pred CccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCC---CCCCCHHHHHHHHHHcCCCCCcEEE
Q 024886 146 PHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVG---CEKPDPRIFKAALDQMSVEASRTVH 221 (261)
Q Consensus 146 ~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~---~~Kp~~~~~~~~~~~l~~~~~~~l~ 221 (261)
|+++.+.++.|++.+.+++++||.+.. ....+...|+..+|+.+..+.... .+||+|.+|+.+++++|++|+++++
T Consensus 122 y~~l~~a~~~L~~~~~~~~iatn~~~~~~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~~ 201 (257)
T TIGR01458 122 YQILNQAFRLLLDGAKPLLIAIGKGRYYKRKDGLALDVGPFVTALEYATDTKATVVGKPSKTFFLEALRATGCEPEEAVM 201 (257)
T ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCCcCCCCCCCCchHHHHHHHHHhCCCceeecCCCHHHHHHHHHHhCCChhhEEE
Confidence 578888999999888999999997765 445556678888888776654433 3799999999999999999999999
Q ss_pred EcCCchhhhHHHHhCCCeEEEECCCCCC
Q 024886 222 IGDDEKADKQGANSLGIDCWLWGIDVKT 249 (261)
Q Consensus 222 iGD~~~~Di~~a~~~G~~~i~v~~~~~~ 249 (261)
|||+...|+.+|+++|+.+++|.++...
T Consensus 202 vGD~~~~Di~~a~~~G~~~i~v~~G~~~ 229 (257)
T TIGR01458 202 IGDDCRDDVGGAQDCGMRGIQVRTGKYR 229 (257)
T ss_pred ECCCcHHHHHHHHHcCCeEEEECCCCCC
Confidence 9999559999999999999999887543
No 72
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=99.71 E-value=7.2e-17 Score=116.54 Aligned_cols=87 Identities=16% Similarity=0.214 Sum_probs=75.9
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCC-chH-HHHHHHhcC-------cccccceEEecCCCCCCCCCHHHHHHHHHHcC-
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNF-DTR-LRKLLKDLN-------VIDLFDAVVISSEVGCEKPDPRIFKAALDQMS- 213 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~-~~~-~~~~l~~~g-------l~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~- 213 (261)
+++||+.++|+.|+++|++++++||+ ... ....++..+ +..+|+.+++++. +|+|+.|..+++++|
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~~~~~~~~----~pkp~~~~~a~~~lg~ 104 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFDPLTIGYW----LPKSPRLVEIALKLNG 104 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhhhhhhcCC----CcHHHHHHHHHHHhcC
Confidence 57899999999999999999999998 666 577788888 7889998887753 588889999999999
Q ss_pred -CCCCcEEEEcCCchhhhHHHHh
Q 024886 214 -VEASRTVHIGDDEKADKQGANS 235 (261)
Q Consensus 214 -~~~~~~l~iGD~~~~Di~~a~~ 235 (261)
++|++|+||||+ ..|++..++
T Consensus 105 ~~~p~~~l~igDs-~~n~~~~~~ 126 (128)
T TIGR01681 105 VLKPKSILFVDDR-PDNNEEVDY 126 (128)
T ss_pred CCCcceEEEECCC-HhHHHHHHh
Confidence 999999999999 788876653
No 73
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.70 E-value=1.3e-17 Score=124.48 Aligned_cols=90 Identities=17% Similarity=0.266 Sum_probs=77.4
Q ss_pred HHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhh
Q 024886 152 SILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADK 230 (261)
Q Consensus 152 ~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di 230 (261)
+++.|+++|++++|+||.+.. +...++.+|+..+|+. .+|+++.+..+++++|++++++++|||+ .+|+
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~~~~~~---------~~~k~~~~~~~~~~~~~~~~~~~~vGDs-~~D~ 105 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTLGITHLYQG---------QSNKLIAFSDILEKLALAPENVAYIGDD-LIDW 105 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCCEEEec---------ccchHHHHHHHHHHcCCCHHHEEEECCC-HHHH
Confidence 799999999999999998877 7889999998777652 3788999999999999999999999999 7999
Q ss_pred HHHHhCCCeEEEECCCCCChHH
Q 024886 231 QGANSLGIDCWLWGIDVKTFSD 252 (261)
Q Consensus 231 ~~a~~~G~~~i~v~~~~~~~~e 252 (261)
++++.+|+. +.+.++......
T Consensus 106 ~~~~~ag~~-~~v~~~~~~~~~ 126 (154)
T TIGR01670 106 PVMEKVGLS-VAVADAHPLLIP 126 (154)
T ss_pred HHHHHCCCe-EecCCcCHHHHH
Confidence 999999997 577666443333
No 74
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=99.69 E-value=2.9e-16 Score=113.70 Aligned_cols=93 Identities=29% Similarity=0.360 Sum_probs=82.5
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEE
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHI 222 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~i 222 (261)
..-|.+++.+.+++..|.++.|+||+... +..+.+.+|+ +++ ....||.+..|..+++++++++++|++|
T Consensus 46 ~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v----~fi-----~~A~KP~~~~fr~Al~~m~l~~~~vvmV 116 (175)
T COG2179 46 DATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGV----PFI-----YRAKKPFGRAFRRALKEMNLPPEEVVMV 116 (175)
T ss_pred CCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCC----cee-----ecccCccHHHHHHHHHHcCCChhHEEEE
Confidence 44566778899999999999999998876 8889999986 455 3578999999999999999999999999
Q ss_pred cCCchhhhHHHHhCCCeEEEECC
Q 024886 223 GDDEKADKQGANSLGIDCWLWGI 245 (261)
Q Consensus 223 GD~~~~Di~~a~~~G~~~i~v~~ 245 (261)
||..-.||.++.++|+.+|+|-.
T Consensus 117 GDqL~TDVlggnr~G~~tIlV~P 139 (175)
T COG2179 117 GDQLFTDVLGGNRAGMRTILVEP 139 (175)
T ss_pred cchhhhhhhcccccCcEEEEEEE
Confidence 99999999999999999998743
No 75
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=99.69 E-value=3.8e-17 Score=122.80 Aligned_cols=96 Identities=17% Similarity=0.370 Sum_probs=80.6
Q ss_pred HHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhh
Q 024886 151 QSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKAD 229 (261)
Q Consensus 151 ~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~D 229 (261)
..+..|++.|++++|+||.+.. +...++.+|+..+|+.+ ||+|+.+..+++++|++++++++|||+ .+|
T Consensus 41 ~~~~~L~~~Gi~laIiT~k~~~~~~~~l~~lgi~~~f~~~---------kpkp~~~~~~~~~l~~~~~ev~~iGD~-~nD 110 (169)
T TIGR02726 41 MGVIVLQLCGIDVAIITSKKSGAVRHRAEELKIKRFHEGI---------KKKTEPYAQMLEEMNISDAEVCYVGDD-LVD 110 (169)
T ss_pred HHHHHHHHCCCEEEEEECCCcHHHHHHHHHCCCcEEEecC---------CCCHHHHHHHHHHcCcCHHHEEEECCC-HHH
Confidence 4566788899999999998877 79999999998777632 799999999999999999999999999 799
Q ss_pred hHHHHhCCCeEEEECCCCCChHHHHHhh
Q 024886 230 KQGANSLGIDCWLWGIDVKTFSDVQNRI 257 (261)
Q Consensus 230 i~~a~~~G~~~i~v~~~~~~~~el~~~l 257 (261)
+.+++.+|++. .+.++...+.++++++
T Consensus 111 i~~~~~ag~~~-am~nA~~~lk~~A~~I 137 (169)
T TIGR02726 111 LSMMKRVGLAV-AVGDAVADVKEAAAYV 137 (169)
T ss_pred HHHHHHCCCeE-ECcCchHHHHHhCCEE
Confidence 99999999887 5666655555555443
No 76
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.68 E-value=2.5e-16 Score=130.72 Aligned_cols=102 Identities=19% Similarity=0.242 Sum_probs=92.6
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCccc-ccceEEecC-------CCCCCCCCHHHHHHHHHHcCC
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVID-LFDAVVISS-------EVGCEKPDPRIFKAALDQMSV 214 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~-~f~~i~~~~-------~~~~~Kp~~~~~~~~~~~l~~ 214 (261)
.++||+.++++.|++.|++++++||.+.. ....++.+++.. +|+.+++.+ +.+..||+|..+..++++++.
T Consensus 187 ~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~~~ 266 (300)
T PHA02530 187 KPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQTDIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWEKIA 266 (300)
T ss_pred CCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHcCCchhhhhCCcchhhhcccCCCCCCcHHHHHHHHHHHhc
Confidence 78999999999999999999999999877 688899999886 899998887 455689999999999999988
Q ss_pred -CCCcEEEEcCCchhhhHHHHhCCCeEEEECCC
Q 024886 215 -EASRTVHIGDDEKADKQGANSLGIDCWLWGID 246 (261)
Q Consensus 215 -~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~ 246 (261)
++++|++|||+ .+|+++|+++|+.+++|..|
T Consensus 267 ~~~~~~~~vgD~-~~d~~~a~~~Gi~~i~v~~g 298 (300)
T PHA02530 267 PKYDVLLAVDDR-DQVVDMWRRIGLECWQVAPG 298 (300)
T ss_pred cCceEEEEEcCc-HHHHHHHHHhCCeEEEecCC
Confidence 67999999999 89999999999999998654
No 77
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=99.67 E-value=1.8e-15 Score=115.83 Aligned_cols=93 Identities=18% Similarity=0.221 Sum_probs=76.0
Q ss_pred eeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCC------------CCCCCCCHHHHHHHH
Q 024886 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSE------------VGCEKPDPRIFKAAL 209 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~------------~~~~Kp~~~~~~~~~ 209 (261)
.+++||+.++++.++++|++++|+|++... ++.+++.+|+...|...+..++ ...+..|+..+..++
T Consensus 72 ~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~~~~ 151 (177)
T TIGR01488 72 VALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLKELL 151 (177)
T ss_pred CCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCchheeeeEEECCCCEEeCccCCcccCCcchHHHHHHHHH
Confidence 367899999999999999999999999887 7899999998877654443321 123344567888889
Q ss_pred HHcCCCCCcEEEEcCCchhhhHHHHhC
Q 024886 210 DQMSVEASRTVHIGDDEKADKQGANSL 236 (261)
Q Consensus 210 ~~l~~~~~~~l~iGD~~~~Di~~a~~~ 236 (261)
+.+|++++++++|||+ .+|+.+++.+
T Consensus 152 ~~~~~~~~~~~~iGDs-~~D~~~~~~a 177 (177)
T TIGR01488 152 EESKITLKKIIAVGDS-VNDLPMLKLA 177 (177)
T ss_pred HHhCCCHHHEEEEeCC-HHHHHHHhcC
Confidence 9999999999999999 8999998754
No 78
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=99.67 E-value=2.8e-15 Score=118.26 Aligned_cols=96 Identities=17% Similarity=0.184 Sum_probs=76.3
Q ss_pred eeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCccccc---ceEEecCCCCCCCCCHHHH----------HHH
Q 024886 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLF---DAVVISSEVGCEKPDPRIF----------KAA 208 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f---~~i~~~~~~~~~Kp~~~~~----------~~~ 208 (261)
.+++||+.++++.|+++|++++|+|++... ++.+++.++....+ +..+..+.....||.+..+ ..+
T Consensus 69 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~~~ 148 (214)
T TIGR03333 69 AEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKPSL 148 (214)
T ss_pred CcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHHHH
Confidence 489999999999999999999999999877 68888887543333 3344444455667766554 467
Q ss_pred HHHcCCCCCcEEEEcCCchhhhHHHHhCCCe
Q 024886 209 LDQMSVEASRTVHIGDDEKADKQGANSLGID 239 (261)
Q Consensus 209 ~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~ 239 (261)
+++++..+++++||||+ .+|+.+|+.+|+.
T Consensus 149 l~~~~~~~~~~i~iGDg-~~D~~~a~~Ad~~ 178 (214)
T TIGR03333 149 IRKLSEPNDYHIVIGDS-VTDVEAAKQSDLC 178 (214)
T ss_pred HHHHhhcCCcEEEEeCC-HHHHHHHHhCCee
Confidence 77777789999999999 8999999999983
No 79
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=99.67 E-value=1.3e-15 Score=120.26 Aligned_cols=96 Identities=13% Similarity=0.070 Sum_probs=78.1
Q ss_pred eeeCccHHHHHHHHHHCCCeEEEEeCCc----hH-HHHHHHhcCc--ccccceEEecCCCCCCCCCHHHHHHHHHHcCCC
Q 024886 143 WHLPHGAYQSILLLKDAGVKVAVVSNFD----TR-LRKLLKDLNV--IDLFDAVVISSEVGCEKPDPRIFKAALDQMSVE 215 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g~~i~i~T~~~----~~-~~~~l~~~gl--~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~ 215 (261)
..++||+.++|+.|+++|++++++||.+ .. .+.+++.+|+ ..+|+.+++.+. ..||++.. .++++++
T Consensus 113 a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~vil~gd~--~~K~~K~~---~l~~~~i- 186 (237)
T PRK11009 113 SIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNPVIFAGDK--PGQYTKTQ---WLKKKNI- 186 (237)
T ss_pred CcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcccceeEEEcCCC--CCCCCHHH---HHHhcCC-
Confidence 4789999999999999999999999964 22 4666667999 888988887775 36777643 4556776
Q ss_pred CCcEEEEcCCchhhhHHHHhCCCeEEEECCCCC
Q 024886 216 ASRTVHIGDDEKADKQGANSLGIDCWLWGIDVK 248 (261)
Q Consensus 216 ~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~ 248 (261)
++||||+ .+|+.+|+++|+.++.+..+..
T Consensus 187 ---~I~IGDs-~~Di~aA~~AGi~~I~v~~G~~ 215 (237)
T PRK11009 187 ---RIFYGDS-DNDITAAREAGARGIRILRAAN 215 (237)
T ss_pred ---eEEEcCC-HHHHHHHHHcCCcEEEEecCCC
Confidence 8999999 8999999999999998877644
No 80
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=99.64 E-value=7.1e-15 Score=117.58 Aligned_cols=61 Identities=30% Similarity=0.488 Sum_probs=56.9
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCChHHHHHh
Q 024886 196 GCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFSDVQNR 256 (261)
Q Consensus 196 ~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~~ 256 (261)
-.+||++.+|+.+++.++.+++++++|||++..||.+|.++|+.+++|.+|+.+.+++...
T Consensus 187 ~~GKP~~~i~~~al~~~~~~~~~~~mVGD~~~TDI~~a~~~G~~t~LV~TGv~~~~~~~~~ 247 (269)
T COG0647 187 VIGKPSPAIYEAALEKLGLDRSEVLMVGDRLDTDILGAKAAGLDTLLVLTGVSSAEDLDRA 247 (269)
T ss_pred ccCCCCHHHHHHHHHHhCCCcccEEEEcCCchhhHHHHHHcCCCEEEEccCCCChhhhhhh
Confidence 4689999999999999999999999999999999999999999999999999988886644
No 81
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=99.63 E-value=5.6e-16 Score=122.24 Aligned_cols=88 Identities=27% Similarity=0.524 Sum_probs=77.0
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEE
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHI 222 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~i 222 (261)
+++|++.++++.|++.|++++++|+.... ...+.+.+|+. +.++.+... +||.+.+|..+++.+++++++|+||
T Consensus 127 ~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~---~~~v~a~~~--~kP~~k~~~~~i~~l~~~~~~v~~v 201 (215)
T PF00702_consen 127 PLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIF---DSIVFARVI--GKPEPKIFLRIIKELQVKPGEVAMV 201 (215)
T ss_dssp EBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSC---SEEEEESHE--TTTHHHHHHHHHHHHTCTGGGEEEE
T ss_pred cchhhhhhhhhhhhccCcceeeeeccccccccccccccccc---ccccccccc--ccccchhHHHHHHHHhcCCCEEEEE
Confidence 67899999999999999999999987776 79999999983 443433332 7999999999999999999999999
Q ss_pred cCCchhhhHHHHhCC
Q 024886 223 GDDEKADKQGANSLG 237 (261)
Q Consensus 223 GD~~~~Di~~a~~~G 237 (261)
||+ .||+.++++||
T Consensus 202 GDg-~nD~~al~~Ag 215 (215)
T PF00702_consen 202 GDG-VNDAPALKAAG 215 (215)
T ss_dssp ESS-GGHHHHHHHSS
T ss_pred ccC-HHHHHHHHhCc
Confidence 999 79999999987
No 82
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=99.63 E-value=1.4e-15 Score=122.47 Aligned_cols=108 Identities=21% Similarity=0.285 Sum_probs=81.0
Q ss_pred CccHHHHHHHHHHCCCeEEEEeCCchHH-HH--HH-HhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEE
Q 024886 146 PHGAYQSILLLKDAGVKVAVVSNFDTRL-RK--LL-KDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVH 221 (261)
Q Consensus 146 ~~g~~~~l~~L~~~g~~i~i~T~~~~~~-~~--~l-~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~ 221 (261)
|+.+...+..|+ .|.+ +++||.+... .. .+ ..-.+...++...+.+....+||++.+|+.+++.++++++++++
T Consensus 123 y~~l~~a~~~l~-~g~~-~i~tN~D~~~~~~~~~~~~~G~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~ 200 (249)
T TIGR01457 123 YEKFATATLAIR-KGAH-FIGTNGDLAIPTERGLLPGNGSLITVLEVATGVKPVYIGKPNAIIMEKAVEHLGTEREETLM 200 (249)
T ss_pred HHHHHHHHHHHH-CCCe-EEEECCCCCCCCCCCCCCCcHHHHHHHHHHhCCCccccCCChHHHHHHHHHHcCCCcccEEE
Confidence 455566677774 4666 8888876542 11 11 12223344555666666778899999999999999999999999
Q ss_pred EcCCchhhhHHHHhCCCeEEEECCCCCChHHHHH
Q 024886 222 IGDDEKADKQGANSLGIDCWLWGIDVKTFSDVQN 255 (261)
Q Consensus 222 iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~ 255 (261)
|||+...|+.+|+++|+.+++|.++....+++..
T Consensus 201 VGD~~~~Di~~a~~~G~~~v~v~~G~~~~~~~~~ 234 (249)
T TIGR01457 201 VGDNYLTDIRAGIDAGIDTLLVHTGVTKAEEVAG 234 (249)
T ss_pred ECCCchhhHHHHHHcCCcEEEEcCCCCCHHHHhc
Confidence 9999558999999999999999999887776643
No 83
>PLN02645 phosphoglycolate phosphatase
Probab=99.61 E-value=3.1e-15 Score=124.32 Aligned_cols=106 Identities=16% Similarity=0.099 Sum_probs=81.9
Q ss_pred HHHHHHHHHCCCeEEEEeCCchHH--HHHHHhcCcccccceEEecCCCC---CCCCCHHHHHHHHHHcCCCCCcEEEEcC
Q 024886 150 YQSILLLKDAGVKVAVVSNFDTRL--RKLLKDLNVIDLFDAVVISSEVG---CEKPDPRIFKAALDQMSVEASRTVHIGD 224 (261)
Q Consensus 150 ~~~l~~L~~~g~~i~i~T~~~~~~--~~~l~~~gl~~~f~~i~~~~~~~---~~Kp~~~~~~~~~~~l~~~~~~~l~iGD 224 (261)
...+..|+.++-..+|+||.+... ...+...|...+|+.+..+.... .+||+|.+|..+++.+++++++++||||
T Consensus 176 ~~a~~~l~~~~g~~~i~tn~d~~~~~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~a~~~~~~~~~~~~~VGD 255 (311)
T PLN02645 176 QYATLCIRENPGCLFIATNRDAVTHLTDAQEWAGAGSMVGAIKGSTEREPLVVGKPSTFMMDYLANKFGIEKSQICMVGD 255 (311)
T ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCCCCCCCccchHHHHHHHHHHhCCCcccCCCChHHHHHHHHHHcCCCcccEEEEcC
Confidence 334555654333688999977642 33345567777788777765433 4699999999999999999999999999
Q ss_pred CchhhhHHHHhCCCeEEEECCCCCChHHHHH
Q 024886 225 DEKADKQGANSLGIDCWLWGIDVKTFSDVQN 255 (261)
Q Consensus 225 ~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~ 255 (261)
+..+|+.+|+++|+.+++|.+|..+.+++.+
T Consensus 256 ~~~~Di~~A~~aG~~~ilV~~G~~~~~~~~~ 286 (311)
T PLN02645 256 RLDTDILFGQNGGCKTLLVLSGVTSESMLLS 286 (311)
T ss_pred CcHHHHHHHHHcCCCEEEEcCCCCCHHHHHh
Confidence 9569999999999999999988877776643
No 84
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=99.60 E-value=3.4e-15 Score=114.59 Aligned_cols=85 Identities=18% Similarity=0.327 Sum_probs=72.3
Q ss_pred HHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhh
Q 024886 151 QSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKAD 229 (261)
Q Consensus 151 ~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~D 229 (261)
..++.|++.|++++|+||.+.. +..+++.+|+..+|+ ..++++..+..+++++|+++++++||||+ .+|
T Consensus 55 ~~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~lgl~~~f~---------g~~~k~~~l~~~~~~~gl~~~ev~~VGDs-~~D 124 (183)
T PRK09484 55 YGIRCLLTSGIEVAIITGRKSKLVEDRMTTLGITHLYQ---------GQSNKLIAFSDLLEKLAIAPEQVAYIGDD-LID 124 (183)
T ss_pred HHHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCceeec---------CCCcHHHHHHHHHHHhCCCHHHEEEECCC-HHH
Confidence 3567778899999999998877 789999999876664 13567889999999999999999999999 899
Q ss_pred hHHHHhCCCeEEEECCC
Q 024886 230 KQGANSLGIDCWLWGID 246 (261)
Q Consensus 230 i~~a~~~G~~~i~v~~~ 246 (261)
+.+++++|+.. .+.++
T Consensus 125 ~~~a~~aG~~~-~v~~~ 140 (183)
T PRK09484 125 WPVMEKVGLSV-AVADA 140 (183)
T ss_pred HHHHHHCCCeE-ecCCh
Confidence 99999999995 45543
No 85
>PRK11590 hypothetical protein; Provisional
Probab=99.60 E-value=6.9e-14 Score=110.01 Aligned_cols=181 Identities=11% Similarity=0.005 Sum_probs=104.1
Q ss_pred cccEEEEccCCccccccccHHHHHHHHH-HHhCCCCCH-HHHHHHHHHHhcCCCccccccCCCChhHHHHHHHHhcCCC-
Q 024886 49 AYDAVLLDAGGTLLQLAEPVEETYASIA-RKYGLNVDS-ADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCT- 125 (261)
Q Consensus 49 ~~k~iifD~DGTL~d~~~~~~~~~~~~~-~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 125 (261)
..|+++||+||||++ ......+...+ +++|+.... .... ...+............+.. .-+.....+..
T Consensus 5 ~~k~~iFD~DGTL~~--~d~~~~~~~~~~~~~g~~~~~~~~~~----~~ig~~l~~~~~~~~~~~~--~~~~~~~~g~~~ 76 (211)
T PRK11590 5 ERRVVFFDLDGTLHQ--QDMFGSFLRYLLRRQPLNLLLVLPLL----PVIGLGLLVKGRAARWPMS--LLLWGCTFGHSE 76 (211)
T ss_pred cceEEEEecCCCCcc--cchHHHHHHHHHHhcchhhHHHhHHH----HHhccCcccchhhhhhhHH--HHHHHHHcCCCH
Confidence 357899999999994 33555666666 777765322 2222 2222221111100000000 00111111222
Q ss_pred --chHHHHHHHHHHhhCCceeeCccHHHHH-HHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecC--------
Q 024886 126 --NDDYFEEVYEYYAKGEAWHLPHGAYQSI-LLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISS-------- 193 (261)
Q Consensus 126 --~~~~~~~~~~~~~~~~~~~~~~g~~~~l-~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~-------- 193 (261)
.++..+.+.+.|... ..++||+.+.| +.+++.|++++|+||++.. ++.+++.+|+.. .+.+++++
T Consensus 77 ~~~~~~~~~f~~~~~~~--~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~~~~-~~~~i~t~l~~~~tg~ 153 (211)
T PRK11590 77 ARLQALEADFVRWFRDN--VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTPWLP-RVNLIASQMQRRYGGW 153 (211)
T ss_pred HHHHHHHHHHHHHHHHh--CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHccccc-cCceEEEEEEEEEccE
Confidence 223334443434332 36799999999 5788889999999999987 688999988522 23344432
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEE
Q 024886 194 EVGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCW 241 (261)
Q Consensus 194 ~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i 241 (261)
-.+..--..+-...+.+.++.+...+.++||| .+|+.+...+|-+.+
T Consensus 154 ~~g~~c~g~~K~~~l~~~~~~~~~~~~aY~Ds-~~D~pmL~~a~~~~~ 200 (211)
T PRK11590 154 VLTLRCLGHEKVAQLERKIGTPLRLYSGYSDS-KQDNPLLYFCQHRWR 200 (211)
T ss_pred ECCccCCChHHHHHHHHHhCCCcceEEEecCC-cccHHHHHhCCCCEE
Confidence 11110111222444555567778888999999 799999999997764
No 86
>PRK10444 UMP phosphatase; Provisional
Probab=99.59 E-value=6.7e-15 Score=118.05 Aligned_cols=69 Identities=26% Similarity=0.391 Sum_probs=59.5
Q ss_pred ceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCChHHHHH
Q 024886 187 DAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFSDVQN 255 (261)
Q Consensus 187 ~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~ 255 (261)
+.+.+.+....+||++.+|+.+++.++++++++++|||+...|+.+|+++|+.+++|.+|..+.+++.+
T Consensus 162 ~~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~v~IGD~~~tDi~~A~~~G~~~vlV~~G~~~~~~l~~ 230 (248)
T PRK10444 162 EKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSTLDDIDS 230 (248)
T ss_pred HHHhCCCccccCCCCHHHHHHHHHHcCCCcccEEEECCCcHHHHHHHHHcCCCEEEECCCCCCHHHHhc
Confidence 334444445568999999999999999999999999999668999999999999999999888887754
No 87
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=99.57 E-value=8.5e-14 Score=104.40 Aligned_cols=100 Identities=29% Similarity=0.463 Sum_probs=83.5
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCc--------h-------H-HHHHHHhcCcccccceEEecCC-----CCCCCCCH
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFD--------T-------R-LRKLLKDLNVIDLFDAVVISSE-----VGCEKPDP 202 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~--------~-------~-~~~~l~~~gl~~~f~~i~~~~~-----~~~~Kp~~ 202 (261)
.+.||+.+++..|++.|++++++||.+ . . +...++..|. .|+.++.+.. ....||++
T Consensus 31 ~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv--~id~i~~Cph~p~~~c~cRKP~~ 108 (181)
T COG0241 31 QFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGV--KIDGILYCPHHPEDNCDCRKPKP 108 (181)
T ss_pred ccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCC--ccceEEECCCCCCCCCcccCCCh
Confidence 778999999999999999999999932 1 1 2344555565 4787777643 45789999
Q ss_pred HHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCC
Q 024886 203 RIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGID 246 (261)
Q Consensus 203 ~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~ 246 (261)
.+++.++++++++++..++|||. ..|+++|.++|++.+.+.++
T Consensus 109 gm~~~~~~~~~iD~~~s~~VGD~-~~Dlq~a~n~gi~~~~~~~~ 151 (181)
T COG0241 109 GMLLSALKEYNIDLSRSYVVGDR-LTDLQAAENAGIKGVLVLTG 151 (181)
T ss_pred HHHHHHHHHhCCCccceEEecCc-HHHHHHHHHCCCCceEEEcC
Confidence 99999999999999999999998 89999999999998877666
No 88
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=99.55 E-value=1.9e-14 Score=115.65 Aligned_cols=98 Identities=22% Similarity=0.182 Sum_probs=80.3
Q ss_pred CccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceE--EecCCCCCCCCCHHHHHHHHHHcCCC-CCcEEE
Q 024886 146 PHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAV--VISSEVGCEKPDPRIFKAALDQMSVE-ASRTVH 221 (261)
Q Consensus 146 ~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i--~~~~~~~~~Kp~~~~~~~~~~~l~~~-~~~~l~ 221 (261)
++++.++++.|+++|+++ |+||.+.. ....+..++...++..+ ++.+....+||++.+|+.+++++|.. +++++|
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~~~~~~g~~~~~i~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~~ 218 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGINQHGIYRYGAGYYAELIKQLGGKVIYSGKPYPAIFHKALKECSNIPKNRMLM 218 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEeccCCCceEecccHHHHHHHHhCCcEecCCCCCHHHHHHHHHHcCCCCcccEEE
Confidence 578899999998889987 88998765 44556667766666644 45555568999999999999999975 679999
Q ss_pred EcCCchhhhHHHHhCCCeEEEEC
Q 024886 222 IGDDEKADKQGANSLGIDCWLWG 244 (261)
Q Consensus 222 iGD~~~~Di~~a~~~G~~~i~v~ 244 (261)
|||+...|+.+|+++|+.+++|.
T Consensus 219 vGD~~~~Di~~a~~~G~~~i~v~ 241 (242)
T TIGR01459 219 VGDSFYTDILGANRLGIDTALVL 241 (242)
T ss_pred ECCCcHHHHHHHHHCCCeEEEEe
Confidence 99996699999999999999874
No 89
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.53 E-value=7.9e-14 Score=121.76 Aligned_cols=92 Identities=13% Similarity=0.230 Sum_probs=79.6
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCch------------H-HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHH
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDT------------R-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALD 210 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~------------~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~ 210 (261)
.++||+.+.|+.|++.|++++|+||... . +..+++.+|+. |+.+++.+.....||++.++..+++
T Consensus 197 ~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgip--fdviia~~~~~~RKP~pGm~~~a~~ 274 (526)
T TIGR01663 197 IIFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGVP--FQVFIAIGAGFYRKPLTGMWDHLKE 274 (526)
T ss_pred ecccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCCc--eEEEEeCCCCCCCCCCHHHHHHHHH
Confidence 3689999999999999999999999655 2 56778888875 8888888877788999999999999
Q ss_pred HcC----CCCCcEEEEcCCchhhhHHHHhCCC
Q 024886 211 QMS----VEASRTVHIGDDEKADKQGANSLGI 238 (261)
Q Consensus 211 ~l~----~~~~~~l~iGD~~~~Di~~a~~~G~ 238 (261)
+++ +++++++||||+ ..|++++..+|-
T Consensus 275 ~~~~~~~Id~~~S~~VGDa-agr~~~g~~ag~ 305 (526)
T TIGR01663 275 EANDGTEIQEDDCFFVGDA-AGRPANGKAAGK 305 (526)
T ss_pred hcCcccCCCHHHeEEeCCc-ccchHHHHhcCC
Confidence 995 899999999998 788877776664
No 90
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=99.53 E-value=6.3e-13 Score=97.42 Aligned_cols=118 Identities=16% Similarity=0.207 Sum_probs=90.0
Q ss_pred chHHHHHHHHH-HhhCC-ceeeCccHHHHHHHHHHCCCeEEEEeCCchHH-HHHHH---hcCcccccceEEecCCCCCCC
Q 024886 126 NDDYFEEVYEY-YAKGE-AWHLPHGAYQSILLLKDAGVKVAVVSNFDTRL-RKLLK---DLNVIDLFDAVVISSEVGCEK 199 (261)
Q Consensus 126 ~~~~~~~~~~~-~~~~~-~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~~-~~~l~---~~gl~~~f~~i~~~~~~~~~K 199 (261)
.+.+.-.+++. |.... ..++||++.+.+++.++.|.+++|.|.++... +.+.. ...+..+|++.+-.. -..|
T Consensus 83 lK~lQG~iWa~Gy~sgelkahlypDav~~ik~wk~~g~~vyiYSSGSV~AQkL~Fghs~agdL~~lfsGyfDtt--iG~K 160 (229)
T COG4229 83 LKALQGMIWAHGYESGELKAHLYPDAVQAIKRWKALGMRVYIYSSGSVKAQKLFFGHSDAGDLNSLFSGYFDTT--IGKK 160 (229)
T ss_pred HHHHHhHHHHhccccCccccccCHhHHHHHHHHHHcCCcEEEEcCCCchhHHHhhcccccccHHhhhcceeecc--cccc
Confidence 33444444444 33321 25899999999999999999999999988764 43333 234666777776552 2357
Q ss_pred CCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCC
Q 024886 200 PDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGID 246 (261)
Q Consensus 200 p~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~ 246 (261)
.....|..++...|++|.+++|..|+ .+.+.+|+.+|+.++++.++
T Consensus 161 rE~~SY~kIa~~iGl~p~eilFLSDn-~~EL~AA~~vGl~t~l~~R~ 206 (229)
T COG4229 161 RESQSYAKIAGDIGLPPAEILFLSDN-PEELKAAAGVGLATGLAVRP 206 (229)
T ss_pred ccchhHHHHHHhcCCCchheEEecCC-HHHHHHHHhcchheeeeecC
Confidence 77789999999999999999999998 89999999999999877665
No 91
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.52 E-value=3.8e-14 Score=105.09 Aligned_cols=94 Identities=12% Similarity=-0.050 Sum_probs=84.6
Q ss_pred eeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCccc-ccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEE
Q 024886 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVID-LFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTV 220 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~-~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l 220 (261)
..++||+.++|+.|+ ++++++|+|++... ++.+++.+++.. +|+.+++.++....||+ |..+++.+|.+|++|+
T Consensus 44 v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~l~~~~~~f~~i~~~~d~~~~KP~---~~k~l~~l~~~p~~~i 119 (148)
T smart00577 44 VKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDLLDPKKYFGYRRLFRDECVFVKGK---YVKDLSLLGRDLSNVI 119 (148)
T ss_pred EEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHHhCcCCCEeeeEEECccccccCCe---EeecHHHcCCChhcEE
Confidence 588999999999998 56999999999987 788999999864 56999999999888987 8999999999999999
Q ss_pred EEcCCchhhhHHHHhCCCeEE
Q 024886 221 HIGDDEKADKQGANSLGIDCW 241 (261)
Q Consensus 221 ~iGD~~~~Di~~a~~~G~~~i 241 (261)
+|||+ ..|++++.++|+..-
T Consensus 120 ~i~Ds-~~~~~aa~~ngI~i~ 139 (148)
T smart00577 120 IIDDS-PDSWPFHPENLIPIK 139 (148)
T ss_pred EEECC-HHHhhcCccCEEEec
Confidence 99999 899999999998763
No 92
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.51 E-value=7.7e-14 Score=116.48 Aligned_cols=90 Identities=19% Similarity=0.232 Sum_probs=81.1
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHh----cCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCc
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKD----LNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASR 218 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~----~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~ 218 (261)
.+++|+.++|+.|++.|+.++|+|+++.. +...++. +++.++|+.+... .||+++.+..+++++|+.+++
T Consensus 31 ~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~~~f~~~~~~-----~~pk~~~i~~~~~~l~i~~~~ 105 (320)
T TIGR01686 31 PLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQAEDFDARSIN-----WGPKSESLRKIAKKLNLGTDS 105 (320)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcHHHeeEEEEe-----cCchHHHHHHHHHHhCCCcCc
Confidence 45889999999999999999999998877 7889998 8888899888654 589999999999999999999
Q ss_pred EEEEcCCchhhhHHHHhCCCe
Q 024886 219 TVHIGDDEKADKQGANSLGID 239 (261)
Q Consensus 219 ~l~iGD~~~~Di~~a~~~G~~ 239 (261)
++||||+ ..|+..+++++-.
T Consensus 106 ~vfidD~-~~d~~~~~~~lp~ 125 (320)
T TIGR01686 106 FLFIDDN-PAERANVKITLPV 125 (320)
T ss_pred EEEECCC-HHHHHHHHHHCCC
Confidence 9999999 8999999997754
No 93
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=99.49 E-value=8e-13 Score=108.15 Aligned_cols=110 Identities=7% Similarity=0.010 Sum_probs=71.1
Q ss_pred CccHHHHHHHHHHCCCeEEEEeCCch--HH----HHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcE
Q 024886 146 PHGAYQSILLLKDAGVKVAVVSNFDT--RL----RKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRT 219 (261)
Q Consensus 146 ~~g~~~~l~~L~~~g~~i~i~T~~~~--~~----~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~ 219 (261)
++++.++++.++..+..+.++++.+. .. ..+.+.+++...+......+-...+..++.+++.+++.+|++++++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ei~~~~~~K~~~l~~l~~~~gi~~~e~ 218 (272)
T PRK10530 139 FTQVDSLAQAARQVNAIWKFALTHEDLPQLQHFAKHVEHELGLECEWSWHDQVDIARKGNSKGKRLTQWVEAQGWSMKNV 218 (272)
T ss_pred eEEcccHHHHHhhcCCcEEEEEecCCHHHHHHHHHHHhhhcCceEEEecCceEEEecCCCChHHHHHHHHHHcCCCHHHe
Confidence 46677777777666666666666431 12 3334444543111000011223334456779999999999999999
Q ss_pred EEEcCCchhhhHHHHhCCCeEEEECCCCCChHHHHHhh
Q 024886 220 VHIGDDEKADKQGANSLGIDCWLWGIDVKTFSDVQNRI 257 (261)
Q Consensus 220 l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~~l 257 (261)
++|||+ .||++|++.+|+++ .++++...+++.++++
T Consensus 219 i~~GD~-~NDi~m~~~ag~~v-amgna~~~lk~~Ad~v 254 (272)
T PRK10530 219 VAFGDN-FNDISMLEAAGLGV-AMGNADDAVKARADLV 254 (272)
T ss_pred EEeCCC-hhhHHHHHhcCceE-EecCchHHHHHhCCEE
Confidence 999999 89999999999854 7777765555555544
No 94
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=99.49 E-value=4.2e-12 Score=105.25 Aligned_cols=103 Identities=19% Similarity=0.113 Sum_probs=84.7
Q ss_pred eeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhc-C-------cccccceEEecCC-----------------CC
Q 024886 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDL-N-------VIDLFDAVVISSE-----------------VG 196 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~-g-------l~~~f~~i~~~~~-----------------~~ 196 (261)
+...||+.++|+.|+++|++++|+||++.. .+.+++.+ | +.++||.++++.. .+
T Consensus 183 v~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~yFD~IIt~a~KP~FF~~~~pf~~v~~~~g 262 (343)
T TIGR02244 183 VLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRDYFDVVIVDARKPGFFTEGRPFRQVDVETG 262 (343)
T ss_pred hccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHhhCcEEEeCCCCCcccCCCCceEEEeCCCC
Confidence 456899999999999999999999999987 78889986 7 8899999987632 11
Q ss_pred CCCCCH------------HHHHHHHHHcCCCCCcEEEEcCCchhhhHHHH-hCCCeEEEECC
Q 024886 197 CEKPDP------------RIFKAALDQMSVEASRTVHIGDDEKADKQGAN-SLGIDCWLWGI 245 (261)
Q Consensus 197 ~~Kp~~------------~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~-~~G~~~i~v~~ 245 (261)
..++.. .....+.+.+|+++++++||||+...|+..++ .+||.++++-.
T Consensus 263 ~~~~~~~~~l~~g~vY~gGn~~~~~~~l~~~~~~vlYvGD~i~~Di~~~kk~~Gw~TvlI~p 324 (343)
T TIGR02244 263 SLKWGEVDGLEPGKVYSGGSLKQFHELLKWRGKEVLYFGDHIYGDLLRSKKKRGWRTAAIIP 324 (343)
T ss_pred cccCCccccccCCCeEeCCCHHHHHHHHCCCCCcEEEECCcchHHHHhhHHhcCcEEEEEch
Confidence 111111 22578888899999999999999999999998 89999998855
No 95
>PRK08238 hypothetical protein; Validated
Probab=99.48 E-value=5.1e-12 Score=110.06 Aligned_cols=96 Identities=17% Similarity=0.159 Sum_probs=80.0
Q ss_pred eeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEE
Q 024886 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVH 221 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~ 221 (261)
.+++||+.++++.++++|++++++|+++.. ++.+++.+|+ ||.++++++....||++.. +.+.+.++ .+++++
T Consensus 71 lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGl---Fd~Vigsd~~~~~kg~~K~-~~l~~~l~--~~~~~y 144 (479)
T PRK08238 71 LPYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGL---FDGVFASDGTTNLKGAAKA-AALVEAFG--ERGFDY 144 (479)
T ss_pred CCCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC---CCEEEeCCCccccCCchHH-HHHHHHhC--ccCeeE
Confidence 467899999999999999999999999988 6889999987 8999999987777776543 34556666 356899
Q ss_pred EcCCchhhhHHHHhCCCeEEEECCC
Q 024886 222 IGDDEKADKQGANSLGIDCWLWGID 246 (261)
Q Consensus 222 iGD~~~~Di~~a~~~G~~~i~v~~~ 246 (261)
+||+ .+|+.+++.+| ..+.|+.+
T Consensus 145 vGDS-~~Dlp~~~~A~-~av~Vn~~ 167 (479)
T PRK08238 145 AGNS-AADLPVWAAAR-RAIVVGAS 167 (479)
T ss_pred ecCC-HHHHHHHHhCC-CeEEECCC
Confidence 9999 89999999999 66677554
No 96
>PTZ00445 p36-lilke protein; Provisional
Probab=99.48 E-value=4.9e-13 Score=101.57 Aligned_cols=102 Identities=19% Similarity=0.145 Sum_probs=82.6
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH----------------HHHHHHhcCcccccceEEecC-----------CCC
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR----------------LRKLLKDLNVIDLFDAVVISS-----------EVG 196 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~----------------~~~~l~~~gl~~~f~~i~~~~-----------~~~ 196 (261)
.+.|+.+.++..|++.|+++.|||-++.. ++..|+..+-+.-++.+++.. .++
T Consensus 75 ~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~~g 154 (219)
T PTZ00445 75 SVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYRPLG 154 (219)
T ss_pred cCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhcCccceeeeeeeeCCcccCChhhhhhhc
Confidence 56788899999999999999999987652 355666555554455555432 246
Q ss_pred CCCCCHHH--H--HHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCC
Q 024886 197 CEKPDPRI--F--KAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGID 246 (261)
Q Consensus 197 ~~Kp~~~~--~--~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~ 246 (261)
..||+|.. | +++++++|++|++++||.|+ ..++++|++.|+.++.+..+
T Consensus 155 l~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~-~~NVeaA~~lGi~ai~f~~~ 207 (219)
T PTZ00445 155 LDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDD-MNNCKNALKEGYIALHVTGN 207 (219)
T ss_pred ccCCCccchHHHHHHHHHHcCCCHHHeEeecCC-HHHHHHHHHCCCEEEEcCCh
Confidence 78999999 9 99999999999999999777 89999999999999988654
No 97
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=99.45 E-value=3.1e-12 Score=102.83 Aligned_cols=113 Identities=15% Similarity=0.116 Sum_probs=89.6
Q ss_pred ceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceE------EecCCCCCCCCCH---------HHH
Q 024886 142 AWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAV------VISSEVGCEKPDP---------RIF 205 (261)
Q Consensus 142 ~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i------~~~~~~~~~Kp~~---------~~~ 205 (261)
...+.||+.++++.|+++|++++|+|++... +..+++.+|+.+.+..+ +..++.-.++|.| .++
T Consensus 119 ~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v~ 198 (277)
T TIGR01544 119 DVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDVA 198 (277)
T ss_pred CCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHHHH
Confidence 3689999999999999999999999999987 79999999987666666 4344555567777 677
Q ss_pred HHHHHHcC--CCCCcEEEEcCCchhhhHHHHhC-CCe-EEEECCCCCChHHHHH
Q 024886 206 KAALDQMS--VEASRTVHIGDDEKADKQGANSL-GID-CWLWGIDVKTFSDVQN 255 (261)
Q Consensus 206 ~~~~~~l~--~~~~~~l~iGD~~~~Di~~a~~~-G~~-~i~v~~~~~~~~el~~ 255 (261)
+...+.++ .++++|+++||+ .+|+.||... ... .+-++.=.++.++..+
T Consensus 199 ~~~~~~~~~~~~~~~vI~vGDs-~~Dl~ma~g~~~~~~~l~igfln~~~e~~l~ 251 (277)
T TIGR01544 199 LRNTEYFNQLKDRSNIILLGDS-QGDLRMADGVANVEHILKIGYLNDRVDELLE 251 (277)
T ss_pred HHHHHHhCccCCcceEEEECcC-hhhhhHhcCCCcccceEEEEecccCHHHHHH
Confidence 78888898 899999999999 8999998877 333 3445555566666444
No 98
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=99.42 E-value=1e-12 Score=98.20 Aligned_cols=109 Identities=21% Similarity=0.289 Sum_probs=77.0
Q ss_pred eeeCccHHHHHHHHHHCCCeEEEEeCC-chH-HHHHHHhcCcc----------cccceEEecCCCCCCCCCHHHHHHHHH
Q 024886 143 WHLPHGAYQSILLLKDAGVKVAVVSNF-DTR-LRKLLKDLNVI----------DLFDAVVISSEVGCEKPDPRIFKAALD 210 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g~~i~i~T~~-~~~-~~~~l~~~gl~----------~~f~~i~~~~~~~~~Kp~~~~~~~~~~ 210 (261)
+.+||++.+.|+.|+.+|++++++|-. ..+ ++..|+.+++. ++|+..-. +.+ ++..-|+.+.+
T Consensus 44 v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI----~~g-sK~~Hf~~i~~ 118 (169)
T PF12689_consen 44 VSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEI----YPG-SKTTHFRRIHR 118 (169)
T ss_dssp E---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEEE----SSS--HHHHHHHHHH
T ss_pred EEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhhe----ecC-chHHHHHHHHH
Confidence 689999999999999999999999943 344 79999999998 77776433 222 57778999999
Q ss_pred HcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCChHHHHHhhh
Q 024886 211 QMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFSDVQNRIL 258 (261)
Q Consensus 211 ~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~~l~ 258 (261)
..|++.++++||.|. ..+++...+.|+.++++.+|.. ++++.+.|.
T Consensus 119 ~tgI~y~eMlFFDDe-~~N~~~v~~lGV~~v~v~~Glt-~~~~~~gL~ 164 (169)
T PF12689_consen 119 KTGIPYEEMLFFDDE-SRNIEVVSKLGVTCVLVPDGLT-WDEFERGLE 164 (169)
T ss_dssp HH---GGGEEEEES--HHHHHHHHTTT-EEEE-SSS---HHHHHHHHH
T ss_pred hcCCChhHEEEecCc-hhcceeeEecCcEEEEeCCCCC-HHHHHHHHH
Confidence 999999999999776 8999999999999999999654 676666553
No 99
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=99.42 E-value=1.3e-11 Score=97.08 Aligned_cols=110 Identities=16% Similarity=0.246 Sum_probs=84.6
Q ss_pred eeeCccHHHHHHHHH--HCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCC-----------------CCCCCC--
Q 024886 143 WHLPHGAYQSILLLK--DAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSE-----------------VGCEKP-- 200 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~--~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~-----------------~~~~Kp-- 200 (261)
+++.||+.++++.+. ..|+.++|+|++..- ++.+|+..|+...|+.|++... ...+-|
T Consensus 70 ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~~f~~I~TNpa~~~~~G~l~v~pyh~h~C~~C~~Nm 149 (234)
T PF06888_consen 70 IPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRDCFSEIFTNPACFDADGRLRVRPYHSHGCSLCPPNM 149 (234)
T ss_pred CCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCccccceEEeCCceecCCceEEEeCccCCCCCcCCCcc
Confidence 588999999999994 469999999998887 8999999999999988887521 001111
Q ss_pred -CHHHHHHHHHH---cCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCChHHH
Q 024886 201 -DPRIFKAALDQ---MSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFSDV 253 (261)
Q Consensus 201 -~~~~~~~~~~~---l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~el 253 (261)
|...++.+++. -|+..++++||||. .+|+-++.+.+-.-++..+....+..+
T Consensus 150 CK~~il~~~~~~~~~~g~~~~rviYiGDG-~nD~Cp~~~L~~~D~v~~R~~~~l~~~ 205 (234)
T PF06888_consen 150 CKGKILERLLQEQAQRGVPYDRVIYIGDG-RNDFCPALRLRPRDVVFPRKGYPLHKL 205 (234)
T ss_pred chHHHHHHHHHHHhhcCCCcceEEEECCC-CCCcCcccccCCCCEEecCCCChHHHH
Confidence 34466777666 37888999999998 899999998887766666665544443
No 100
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=99.41 E-value=3.1e-13 Score=96.83 Aligned_cols=95 Identities=21% Similarity=0.371 Sum_probs=77.5
Q ss_pred HHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhh
Q 024886 152 SILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADK 230 (261)
Q Consensus 152 ~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di 230 (261)
.++.|.+.|++++|+|+..+. ++...+.+|+...|.++ +.+...|+.+++++++.++++.|+||+ .+|+
T Consensus 43 Gik~l~~~Gi~vAIITGr~s~ive~Ra~~LGI~~~~qG~---------~dK~~a~~~L~~~~~l~~e~~ayiGDD-~~Dl 112 (170)
T COG1778 43 GIKLLLKSGIKVAIITGRDSPIVEKRAKDLGIKHLYQGI---------SDKLAAFEELLKKLNLDPEEVAYVGDD-LVDL 112 (170)
T ss_pred HHHHHHHcCCeEEEEeCCCCHHHHHHHHHcCCceeeech---------HhHHHHHHHHHHHhCCCHHHhhhhcCc-cccH
Confidence 456677889999999999887 79999999987555433 446779999999999999999999999 7999
Q ss_pred HHHHhCCCeEEEECCCCCChHHHHHhh
Q 024886 231 QGANSLGIDCWLWGIDVKTFSDVQNRI 257 (261)
Q Consensus 231 ~~a~~~G~~~i~v~~~~~~~~el~~~l 257 (261)
......|+++ .+.++...+.+.++++
T Consensus 113 pvm~~vGls~-a~~dAh~~v~~~a~~V 138 (170)
T COG1778 113 PVMEKVGLSV-AVADAHPLLKQRADYV 138 (170)
T ss_pred HHHHHcCCcc-cccccCHHHHHhhHhh
Confidence 9999999887 4556655555555554
No 101
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=99.39 E-value=1.6e-11 Score=97.68 Aligned_cols=62 Identities=24% Similarity=0.344 Sum_probs=58.6
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCChHHHHHh
Q 024886 195 VGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFSDVQNR 256 (261)
Q Consensus 195 ~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~~ 256 (261)
.-.+||++.+++.+.++++++|++++||||++..||..+++.|+++++|-+|+.+.+++.+.
T Consensus 220 ~v~GKP~~~m~~~l~~~~~i~psRt~mvGDRL~TDIlFG~~~G~~TLLvltGv~~led~~~~ 281 (306)
T KOG2882|consen 220 IVLGKPSTFMFEYLLEKFNIDPSRTCMVGDRLDTDILFGKNCGFKTLLVLSGVTTLEDILEA 281 (306)
T ss_pred eecCCCCHHHHHHHHHHcCCCcceEEEEcccchhhhhHhhccCcceEEEecCcCcHHHHHhc
Confidence 33689999999999999999999999999999999999999999999999999999998765
No 102
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=99.39 E-value=7.6e-11 Score=92.41 Aligned_cols=97 Identities=9% Similarity=-0.008 Sum_probs=67.1
Q ss_pred eeCccHHHHHH-HHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecC----CCC--CCCC--CHHHHHHHHHHcC
Q 024886 144 HLPHGAYQSIL-LLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISS----EVG--CEKP--DPRIFKAALDQMS 213 (261)
Q Consensus 144 ~~~~g~~~~l~-~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~----~~~--~~Kp--~~~~~~~~~~~l~ 213 (261)
.++||+.+.|+ .++++|++++|+||++.. ++.+.+..++... +.++++. +.+ .+.+ ..+-...+.+.++
T Consensus 94 ~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~~~~~~-~~~i~t~le~~~gg~~~g~~c~g~~Kv~rl~~~~~ 172 (210)
T TIGR01545 94 TAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDSNFIHR-LNLIASQIERGNGGWVLPLRCLGHEKVAQLEQKIG 172 (210)
T ss_pred CCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhcccccc-CcEEEEEeEEeCCceEcCccCCChHHHHHHHHHhC
Confidence 67999999995 788899999999999887 6888877654221 2333332 101 0111 1122444555556
Q ss_pred CCCCcEEEEcCCchhhhHHHHhCCCeEEE
Q 024886 214 VEASRTVHIGDDEKADKQGANSLGIDCWL 242 (261)
Q Consensus 214 ~~~~~~l~iGD~~~~Di~~a~~~G~~~i~ 242 (261)
.+.+.+.++||| .+|+.+...+|-+.+.
T Consensus 173 ~~~~~~~aYsDS-~~D~pmL~~a~~~~~V 200 (210)
T TIGR01545 173 SPLKLYSGYSDS-KQDNPLLAFCEHRWRV 200 (210)
T ss_pred CChhheEEecCC-cccHHHHHhCCCcEEE
Confidence 677788999999 7999999999987743
No 103
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=99.34 E-value=9.1e-13 Score=105.15 Aligned_cols=92 Identities=15% Similarity=0.174 Sum_probs=65.3
Q ss_pred EEEEeCCchH-HHHHHHhcCcccccceEE---ecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCC
Q 024886 163 VAVVSNFDTR-LRKLLKDLNVIDLFDAVV---ISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGI 238 (261)
Q Consensus 163 i~i~T~~~~~-~~~~l~~~gl~~~f~~i~---~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~ 238 (261)
+.+.++.... +...++..+.. +.... ..+-...+.+|+..++.+++.+|++++++++|||+ .||++|++.+|+
T Consensus 118 ~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~ei~~~~~~Kg~al~~l~~~~~i~~~~~i~~GD~-~NDi~m~~~ag~ 194 (230)
T PRK01158 118 VALRRTVPVEEVRELLEELGLD--LEIVDSGFAIHIKSPGVNKGTGLKKLAELMGIDPEEVAAIGDS-ENDLEMFEVAGF 194 (230)
T ss_pred eeecccccHHHHHHHHHHcCCc--EEEEecceEEEEeeCCCChHHHHHHHHHHhCCCHHHEEEECCc-hhhHHHHHhcCc
Confidence 3444443333 56666666531 22111 12334456667889999999999999999999999 899999999998
Q ss_pred eEEEECCCCCChHHHHHhhh
Q 024886 239 DCWLWGIDVKTFSDVQNRIL 258 (261)
Q Consensus 239 ~~i~v~~~~~~~~el~~~l~ 258 (261)
+. .++++...+++.++++.
T Consensus 195 ~v-am~Na~~~vk~~a~~v~ 213 (230)
T PRK01158 195 GV-AVANADEELKEAADYVT 213 (230)
T ss_pred eE-EecCccHHHHHhcceEe
Confidence 76 78888777777766653
No 104
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=99.33 E-value=1.4e-11 Score=92.09 Aligned_cols=95 Identities=22% Similarity=0.421 Sum_probs=69.5
Q ss_pred eeC-ccHHHHHHHHHHCCCeEEEEeCCc---h-----H-------HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHH
Q 024886 144 HLP-HGAYQSILLLKDAGVKVAVVSNFD---T-----R-------LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKA 207 (261)
Q Consensus 144 ~~~-~g~~~~l~~L~~~g~~i~i~T~~~---~-----~-------~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~ 207 (261)
.++ |++.+.|+.|.+.||.|+|+||.. . . +..+++.+++. +...++.......||.+.+++.
T Consensus 28 ~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l~ip--~~~~~a~~~d~~RKP~~GM~~~ 105 (159)
T PF08645_consen 28 KFFPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKELGIP--IQVYAAPHKDPCRKPNPGMWEF 105 (159)
T ss_dssp EEC-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHCTS---EEEEECGCSSTTSTTSSHHHHH
T ss_pred hhcchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHcCCc--eEEEecCCCCCCCCCchhHHHH
Confidence 554 589999999999999999999841 1 1 24556666664 4444444555789999999999
Q ss_pred HHHHcCC----CCCcEEEEcCC--c--------hhhhHHHHhCCCeE
Q 024886 208 ALDQMSV----EASRTVHIGDD--E--------KADKQGANSLGIDC 240 (261)
Q Consensus 208 ~~~~l~~----~~~~~l~iGD~--~--------~~Di~~a~~~G~~~ 240 (261)
+++.++. +.++++||||. + ..|.+-|.++|++.
T Consensus 106 ~~~~~~~~~~id~~~Sf~VGDaagr~~~~~d~s~~D~~fA~N~gi~f 152 (159)
T PF08645_consen 106 ALKDYNDGVEIDLANSFYVGDAAGRSKKKKDFSDSDRKFALNCGIKF 152 (159)
T ss_dssp HCCCTSTT--S-CCC-EEEESSCHCTB-S--S--HHHHHHHHHT--E
T ss_pred HHHhccccccccccceEEEeccCCCCCcccccChhHHHHHHHcCCcc
Confidence 9999974 99999999994 1 57999999999986
No 105
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=99.32 E-value=9.8e-12 Score=93.29 Aligned_cols=54 Identities=31% Similarity=0.470 Sum_probs=50.2
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCC
Q 024886 193 SEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGID 246 (261)
Q Consensus 193 ~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~ 246 (261)
+..-.+||++.+|+.+++.+|++|++++||||+...|+-.|.+.||..|.|-+|
T Consensus 175 ~a~vvGKP~~~fFe~al~~~gv~p~~aVMIGDD~~dDvgGAq~~GMrgilVkTG 228 (262)
T KOG3040|consen 175 EATVVGKPSPFFFESALQALGVDPEEAVMIGDDLNDDVGGAQACGMRGILVKTG 228 (262)
T ss_pred eEEEecCCCHHHHHHHHHhcCCChHHheEEccccccchhhHhhhcceeEEeecc
Confidence 344578999999999999999999999999999999999999999999999777
No 106
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=99.32 E-value=2.6e-12 Score=102.69 Aligned_cols=51 Identities=33% Similarity=0.531 Sum_probs=46.2
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCcE-EEEcCCchhhhHHHHhCCCeEEEECCC
Q 024886 196 GCEKPDPRIFKAALDQMSVEASRT-VHIGDDEKADKQGANSLGIDCWLWGID 246 (261)
Q Consensus 196 ~~~Kp~~~~~~~~~~~l~~~~~~~-l~iGD~~~~Di~~a~~~G~~~i~v~~~ 246 (261)
..+||++.+|+.++++++++++++ +||||+...|+.+|+++|+.+++|.+|
T Consensus 185 ~~~KP~~~~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~~G~~~i~v~~G 236 (236)
T TIGR01460 185 VVGKPSPAIYRAALNLLQARPERRDVMVGDNLRTDILGAKNAGFDTLLVLTG 236 (236)
T ss_pred eecCCCHHHHHHHHHHhCCCCccceEEECCCcHHHHHHHHHCCCcEEEEecC
Confidence 467999999999999999999887 999999558999999999999998654
No 107
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=99.29 E-value=8.8e-12 Score=81.22 Aligned_cols=59 Identities=34% Similarity=0.566 Sum_probs=54.7
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCChHHHHH
Q 024886 197 CEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFSDVQN 255 (261)
Q Consensus 197 ~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~ 255 (261)
.+||+|.+|..++++++++++++++|||++..||++|+++|+.+++|.++..+.+++..
T Consensus 2 ~gKP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~tG~~~~~~~~~ 60 (75)
T PF13242_consen 2 CGKPSPGMLEQALKRLGVDPSRCVMVGDSLETDIEAAKAAGIDTILVLTGVYSPEDLEK 60 (75)
T ss_dssp CSTTSHHHHHHHHHHHTSGGGGEEEEESSTTTHHHHHHHTTSEEEEESSSSSCCCGHHH
T ss_pred CCCCcHHHHHHHHHHcCCCHHHEEEEcCCcHhHHHHHHHcCCcEEEECCCCCCHHHHhc
Confidence 58999999999999999999999999999789999999999999999999887777653
No 108
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=99.28 E-value=4.4e-11 Score=89.05 Aligned_cols=95 Identities=24% Similarity=0.197 Sum_probs=70.6
Q ss_pred eeCccHHHHHHHHHHCCC--eEEEEeCCc-------hH-HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcC
Q 024886 144 HLPHGAYQSILLLKDAGV--KVAVVSNFD-------TR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMS 213 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~--~i~i~T~~~-------~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~ 213 (261)
.+.|.+.+.++++++.+. ++.|+||+. .. ++.+-+.+|+. .+.. ...|| ..+..+.+.++
T Consensus 59 ~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIp----vl~h----~~kKP--~~~~~i~~~~~ 128 (168)
T PF09419_consen 59 EIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIP----VLRH----RAKKP--GCFREILKYFK 128 (168)
T ss_pred cCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCc----EEEe----CCCCC--ccHHHHHHHHh
Confidence 344556677777777754 599999972 23 56677778853 2211 24677 47777777776
Q ss_pred C-----CCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCC
Q 024886 214 V-----EASRTVHIGDDEKADKQGANSLGIDCWLWGIDVK 248 (261)
Q Consensus 214 ~-----~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~ 248 (261)
. .|+++++|||.+-.|+-+|..+|+.+|++..|+.
T Consensus 129 ~~~~~~~p~eiavIGDrl~TDVl~gN~~G~~tilv~~gv~ 168 (168)
T PF09419_consen 129 CQKVVTSPSEIAVIGDRLFTDVLMGNRMGSYTILVTDGVT 168 (168)
T ss_pred hccCCCCchhEEEEcchHHHHHHHhhccCceEEEEecCcC
Confidence 4 4999999999999999999999999999988763
No 109
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=99.28 E-value=5.8e-12 Score=100.16 Aligned_cols=93 Identities=12% Similarity=0.109 Sum_probs=65.7
Q ss_pred EEEeCCchH-HHHHHHhcCccccc-ceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEE
Q 024886 164 AVVSNFDTR-LRKLLKDLNVIDLF-DAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCW 241 (261)
Q Consensus 164 ~i~T~~~~~-~~~~l~~~gl~~~f-~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i 241 (261)
.+.+....+ +..+++.++....+ ......+-...+.+|...++.+++.+|++++++++|||+ .||+.|++.+|.++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~~GD~-~NDi~m~~~ag~~v- 188 (225)
T TIGR01482 111 KMRYGIDVDTVREIIKELGLNLVAVDSGFDIHILPQGVNKGVAVKKLKEKLGIKPGETLVCGDS-ENDIDLFEVPGFGV- 188 (225)
T ss_pred EEeecCCHHHHHHHHHhcCceEEEecCCcEEEEeeCCCCHHHHHHHHHHHhCCCHHHEEEECCC-HhhHHHHHhcCceE-
Confidence 334433433 56677777643111 001122334456778889999999999999999999999 89999999999875
Q ss_pred EECCCCCChHHHHHhhh
Q 024886 242 LWGIDVKTFSDVQNRIL 258 (261)
Q Consensus 242 ~v~~~~~~~~el~~~l~ 258 (261)
.++++.+.+++.++.+.
T Consensus 189 am~Na~~~~k~~A~~vt 205 (225)
T TIGR01482 189 AVANAQPELKEWADYVT 205 (225)
T ss_pred EcCChhHHHHHhcCeec
Confidence 78888777777776653
No 110
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=99.23 E-value=2.7e-10 Score=91.64 Aligned_cols=83 Identities=17% Similarity=0.173 Sum_probs=65.8
Q ss_pred eeeCccHHHHHHHHHHCCCeEEEEeCCchH----HHHHHHhcCcccc-cceEEecCCCCCCCCCHHHHHHHHHHcCCCCC
Q 024886 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTR----LRKLLKDLNVIDL-FDAVVISSEVGCEKPDPRIFKAALDQMSVEAS 217 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~----~~~~l~~~gl~~~-f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~ 217 (261)
..++||+.++++.|+++|++++++||.+.. ....++.+|+... ++.++..++ .++++.-.+.+.+.+++
T Consensus 117 a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lllr~~---~~~K~~rr~~I~~~y~I--- 190 (266)
T TIGR01533 117 AKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLLLKKD---KSSKESRRQKVQKDYEI--- 190 (266)
T ss_pred CCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEEeCCC---CCCcHHHHHHHHhcCCE---
Confidence 478999999999999999999999997743 2577888998754 456665542 35666788888888887
Q ss_pred cEEEEcCCchhhhHHH
Q 024886 218 RTVHIGDDEKADKQGA 233 (261)
Q Consensus 218 ~~l~iGD~~~~Di~~a 233 (261)
+++|||+ ..|+..+
T Consensus 191 -vl~vGD~-~~Df~~~ 204 (266)
T TIGR01533 191 -VLLFGDN-LLDFDDF 204 (266)
T ss_pred -EEEECCC-HHHhhhh
Confidence 8999998 7999654
No 111
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=99.22 E-value=1.3e-10 Score=94.92 Aligned_cols=60 Identities=13% Similarity=0.212 Sum_probs=51.7
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCChHHHHHhhh
Q 024886 197 CEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFSDVQNRIL 258 (261)
Q Consensus 197 ~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~~l~ 258 (261)
.+-.|..+++.+++.+|++++++++|||+ .||++|.+.+|.+. .++++.+.+++.++++.
T Consensus 193 ~gvsKg~al~~l~~~~gi~~~~v~afGD~-~NDi~Ml~~ag~~v-Am~NA~~~vK~~A~~vt 252 (270)
T PRK10513 193 KRVNKGTGVKSLAEHLGIKPEEVMAIGDQ-ENDIAMIEYAGVGV-AMGNAIPSVKEVAQFVT 252 (270)
T ss_pred CCCChHHHHHHHHHHhCCCHHHEEEECCc-hhhHHHHHhCCceE-EecCccHHHHHhcCeec
Confidence 34556678999999999999999999999 89999999999765 88899888888877764
No 112
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=99.19 E-value=4.5e-11 Score=94.37 Aligned_cols=91 Identities=9% Similarity=0.089 Sum_probs=65.2
Q ss_pred EEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEE
Q 024886 165 VVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLW 243 (261)
Q Consensus 165 i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v 243 (261)
+++..... +...++..++...... ...+-...+..+..+++.+++.+|++++++++|||+ .||++|++.+|+.. .+
T Consensus 112 ~~~~~~~~~~~~~l~~~~~~~~~~~-~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~iGDs-~ND~~ml~~ag~~v-am 188 (215)
T TIGR01487 112 MREGKDVDEVREIIKERGLNLVDSG-FAIHIMKKGVDKGVGVEKLKELLGIKPEEVAAIGDS-ENDIDLFRVVGFKV-AV 188 (215)
T ss_pred ecCCccHHHHHHHHHhCCeEEEecC-ceEEEecCCCChHHHHHHHHHHhCCCHHHEEEECCC-HHHHHHHHhCCCeE-Ec
Confidence 34443433 5667777665433221 111223345567779999999999999999999999 89999999999776 78
Q ss_pred CCCCCChHHHHHhhh
Q 024886 244 GIDVKTFSDVQNRIL 258 (261)
Q Consensus 244 ~~~~~~~~el~~~l~ 258 (261)
.++.+.+++.++++.
T Consensus 189 ~na~~~~k~~A~~v~ 203 (215)
T TIGR01487 189 ANADDQLKEIADYVT 203 (215)
T ss_pred CCccHHHHHhCCEEc
Confidence 888777777777664
No 113
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.19 E-value=2.3e-10 Score=93.66 Aligned_cols=54 Identities=11% Similarity=0.050 Sum_probs=46.5
Q ss_pred CCCCCCCHHHHHHHHHHcCCCC-CcEEEEcCCchhhhHHHHhCCCeEEEECCCCCChH
Q 024886 195 VGCEKPDPRIFKAALDQMSVEA-SRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFS 251 (261)
Q Consensus 195 ~~~~Kp~~~~~~~~~~~l~~~~-~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~ 251 (261)
.+.+ .+...++.+++.+|+++ +++++|||+ .||++|++.+|.++ .++++.+..+
T Consensus 186 ~~~~-~Kg~al~~l~~~~~i~~~~~v~~~GDs-~NDi~m~~~ag~~v-am~NA~~~~k 240 (273)
T PRK00192 186 LGGG-DKGKAVRWLKELYRRQDGVETIALGDS-PNDLPMLEAADIAV-VVPGPDGPNP 240 (273)
T ss_pred eCCC-CHHHHHHHHHHHHhccCCceEEEEcCC-hhhHHHHHhCCeeE-EeCCCCCCCc
Confidence 3344 66779999999999999 999999999 89999999999776 7888877666
No 114
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.19 E-value=8.3e-10 Score=82.18 Aligned_cols=162 Identities=15% Similarity=0.197 Sum_probs=98.5
Q ss_pred cccEEEEccCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCccccccCCCChhHHHHHHHHhcCCCchH
Q 024886 49 AYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTNDD 128 (261)
Q Consensus 49 ~~k~iifD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (261)
+.++|+||+|.|++..+ .+.+++...|+.-...++.. ..+ +...+|...+..+..-.. .
T Consensus 15 ~~~aVcFDvDSTvi~eE-----gIdelA~~~G~~~~Va~~T~---rAM-----------ng~~~F~eaL~~Rl~llq--p 73 (227)
T KOG1615|consen 15 SADAVCFDVDSTVIQEE-----GIDELAAYCGVGEAVAEVTR---RAM-----------NGEADFQEALAARLSLLQ--P 73 (227)
T ss_pred hcCeEEEecCcchhHHh-----hHHHHHHHhCchHHHHHHHH---HHh-----------CCCCcHHHHHHHHHHHhc--c
Confidence 46899999999999753 35555555555411111111 111 122333333333332211 1
Q ss_pred HHHHHHHHHhhCCceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCccc--cc--------ceEEec-CCC-
Q 024886 129 YFEEVYEYYAKGEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVID--LF--------DAVVIS-SEV- 195 (261)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~--~f--------~~i~~~-~~~- 195 (261)
....+.... ...++++.||+++++..|++.|..++++|++... +..+-..+|++. .+ ++-+.+ +..
T Consensus 74 ~~~qv~~~v-~~~k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ 152 (227)
T KOG1615|consen 74 LQVQVEQFV-IKQKPTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNE 152 (227)
T ss_pred cHHHHHHHH-hcCCCccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhheeeeccCCcccccccCC
Confidence 122222222 2334688999999999999999999999999988 688888898863 22 122222 111
Q ss_pred --CCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHh
Q 024886 196 --GCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANS 235 (261)
Q Consensus 196 --~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~ 235 (261)
.-+--+++.+..+.+ |.+-..++||||. .+|+++..-
T Consensus 153 ptsdsggKa~~i~~lrk--~~~~~~~~mvGDG-atDlea~~p 191 (227)
T KOG1615|consen 153 PTSDSGGKAEVIALLRK--NYNYKTIVMVGDG-ATDLEAMPP 191 (227)
T ss_pred ccccCCccHHHHHHHHh--CCChheeEEecCC-ccccccCCc
Confidence 112224457777777 7778999999998 899987665
No 115
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=99.18 E-value=3.4e-10 Score=87.65 Aligned_cols=84 Identities=24% Similarity=0.294 Sum_probs=60.7
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCC--C-------CCC----CCHHHHHHH---H
Q 024886 147 HGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEV--G-------CEK----PDPRIFKAA---L 209 (261)
Q Consensus 147 ~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~--~-------~~K----p~~~~~~~~---~ 209 (261)
|++.++++.++++|++++|+|+++.. ++.+++.+|+.... ++++... + ... .|...++.+ .
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~~~~~ 169 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDN--VIGNELFDNGGGIFTGRITGSNCGGKAEALKELYIRD 169 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGG--EEEEEEECTTCCEEEEEEEEEEESHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceE--EEEEeeeecccceeeeeECCCCCCcHHHHHHHHHHHh
Confidence 45559999999999999999999887 78999999986421 2221110 0 000 145566666 4
Q ss_pred HHcCCCCCcEEEEcCCchhhhHHHH
Q 024886 210 DQMSVEASRTVHIGDDEKADKQGAN 234 (261)
Q Consensus 210 ~~l~~~~~~~l~iGD~~~~Di~~a~ 234 (261)
.. +.+...+++|||+ .+|+.+++
T Consensus 170 ~~-~~~~~~~~~iGDs-~~D~~~lr 192 (192)
T PF12710_consen 170 EE-DIDPDRVIAIGDS-INDLPMLR 192 (192)
T ss_dssp HH-THTCCEEEEEESS-GGGHHHHH
T ss_pred hc-CCCCCeEEEEECC-HHHHHHhC
Confidence 44 8889999999999 89999875
No 116
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=99.16 E-value=1.5e-10 Score=92.86 Aligned_cols=57 Identities=18% Similarity=0.212 Sum_probs=52.4
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHH
Q 024886 147 HGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPR 203 (261)
Q Consensus 147 ~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~ 203 (261)
||+.++|++|+++|++++|+|++... +...++.+|+..+|+.++++++....||.++
T Consensus 149 PgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YFdvIIs~Gdv~~~kp~~e 206 (301)
T TIGR01684 149 PRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYFDIIISGGHKAEEYSTMS 206 (301)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCcccCEEEECCccccCCCCcc
Confidence 88999999999999999999998877 7899999999999999999998888888774
No 117
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.12 E-value=2.6e-09 Score=81.15 Aligned_cols=108 Identities=16% Similarity=0.164 Sum_probs=78.0
Q ss_pred eeeCccHHHHHHHHHHCCC-eEEEEeCCchH-HHHHHHhcCcccccceEEecCC----CC-----------CC--CC---
Q 024886 143 WHLPHGAYQSILLLKDAGV-KVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSE----VG-----------CE--KP--- 200 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g~-~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~----~~-----------~~--Kp--- 200 (261)
+++.||+.++++.+++.|. .+.|+|.+..- ++.+|+.+|+.+.|..|++... -| .+ -|
T Consensus 83 iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~d~F~~IfTNPa~~da~G~L~v~pyH~~hsC~~CPsNm 162 (256)
T KOG3120|consen 83 IPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIHDLFSEIFTNPACVDASGRLLVRPYHTQHSCNLCPSNM 162 (256)
T ss_pred CCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHHHHHHHHhcCCcccCCCCcEEeecCCCCCccCcCchhh
Confidence 5889999999999999985 99999998877 8999999999999988876531 00 00 11
Q ss_pred -CHHHHHHHHHHc---CCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCChH
Q 024886 201 -DPRIFKAALDQM---SVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFS 251 (261)
Q Consensus 201 -~~~~~~~~~~~l---~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~ 251 (261)
+...++.+.... |+.-++.+|+||. .+|+-+.....-.-+.+.+....+.
T Consensus 163 CKg~Vl~~~~~s~~~~gv~yer~iYvGDG-~nD~CP~l~Lr~~D~ampRkgfpl~ 216 (256)
T KOG3120|consen 163 CKGLVLDELVASQLKDGVRYERLIYVGDG-ANDFCPVLRLRACDVAMPRKGFPLW 216 (256)
T ss_pred hhhHHHHHHHHHHhhcCCceeeEEEEcCC-CCCcCcchhcccCceecccCCCchH
Confidence 112333333332 7888999999998 8999887776555556665544333
No 118
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=99.11 E-value=1.3e-10 Score=97.04 Aligned_cols=54 Identities=22% Similarity=0.218 Sum_probs=46.8
Q ss_pred CCCCCCHHHHHHHHHHc--------CC-----CCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCC
Q 024886 196 GCEKPDPRIFKAALDQM--------SV-----EASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKT 249 (261)
Q Consensus 196 ~~~Kp~~~~~~~~~~~l--------~~-----~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~ 249 (261)
..+||++.+|+.+++.+ ++ ++++++||||++..||.+|.++||.+++|.+|..+
T Consensus 230 ~~GKP~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~mIGD~~~tDI~ga~~~G~~silV~tG~~~ 296 (321)
T TIGR01456 230 TLGKPTKLTYDFAEDVLIDWEKRLSGTKPSTSPFHALYMVGDNPASDIIGAQNYGWFSCLVKTGVYN 296 (321)
T ss_pred EcCCCChHHHHHHHHHHHHHHhhhccccccCCChheEEEEcCChhhhhhhHHhCCceEEEecccccC
Confidence 46999999999988887 43 45799999999889999999999999999887443
No 119
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=99.07 E-value=2.5e-10 Score=93.06 Aligned_cols=61 Identities=8% Similarity=0.156 Sum_probs=52.9
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCChHHHHHhh
Q 024886 195 VGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFSDVQNRI 257 (261)
Q Consensus 195 ~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~~l 257 (261)
...+..|..+.+.+++.+|++++++++|||+ .||++|.+.+|.++ .++++.+.++++++.+
T Consensus 184 ~~~g~~K~~al~~l~~~lgi~~~~v~afGD~-~ND~~Ml~~ag~gv-am~Na~~~~k~~A~~v 244 (264)
T COG0561 184 TPKGVSKGYALQRLAKLLGIKLEEVIAFGDS-TNDIEMLEVAGLGV-AMGNADEELKELADYV 244 (264)
T ss_pred ecCCCchHHHHHHHHHHhCCCHHHeEEeCCc-cccHHHHHhcCeee-eccCCCHHHHhhCCcc
Confidence 4456677889999999999999999999999 89999999999766 8888888888877754
No 120
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=99.06 E-value=9.8e-09 Score=82.91 Aligned_cols=91 Identities=14% Similarity=0.116 Sum_probs=64.2
Q ss_pred CCeEEEEeCCch--H----HHHHHHhcCcccccceEEec----CCCCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhh
Q 024886 160 GVKVAVVSNFDT--R----LRKLLKDLNVIDLFDAVVIS----SEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKAD 229 (261)
Q Consensus 160 g~~i~i~T~~~~--~----~~~~l~~~gl~~~f~~i~~~----~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~D 229 (261)
-+++.++..... . +...+...++. +..++++ +..+.+.++..+++.+++.+|++++++++|||+ .||
T Consensus 119 ~~k~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~ldi~~~~~~K~~al~~l~~~~~i~~~~~i~~GD~-~ND 195 (249)
T TIGR01485 119 PHKVSFFLDPEAAPEVIKQLTEMLKETGLD--VKLIYSSGKDLDILPQGSGKGQALQYLLQKLAMEPSQTLVCGDS-GND 195 (249)
T ss_pred CeeEEEEechhhhhHHHHHHHHHHHhcCCC--EEEEEECCceEEEEeCCCChHHHHHHHHHHcCCCccCEEEEECC-hhH
Confidence 366666654322 1 23334444432 2333333 345577889999999999999999999999999 899
Q ss_pred hHHHHhCCCeEEEECCCCCChHHH
Q 024886 230 KQGANSLGIDCWLWGIDVKTFSDV 253 (261)
Q Consensus 230 i~~a~~~G~~~i~v~~~~~~~~el 253 (261)
++|++.+|..+++|+++...+++.
T Consensus 196 ~~ml~~~~~~~va~~na~~~~k~~ 219 (249)
T TIGR01485 196 IELFEIGSVRGVIVSNAQEELLQW 219 (249)
T ss_pred HHHHHccCCcEEEECCCHHHHHHH
Confidence 999999777788998876655543
No 121
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=99.05 E-value=4.9e-09 Score=85.79 Aligned_cols=59 Identities=10% Similarity=0.142 Sum_probs=50.3
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCChHHHHH
Q 024886 195 VGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFSDVQN 255 (261)
Q Consensus 195 ~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~ 255 (261)
...+-.|..+++.+++.+|++++++++|||+ .||++|.+.+|.+. .++++.+.+++.++
T Consensus 183 ~~~g~sKg~al~~l~~~~gi~~~~v~afGD~-~NDi~Ml~~ag~~v-Am~Na~~~vK~~A~ 241 (272)
T PRK15126 183 LPVGCNKGAALAVLSQHLGLSLADCMAFGDA-MNDREMLGSVGRGF-IMGNAMPQLRAELP 241 (272)
T ss_pred ecCCCChHHHHHHHHHHhCCCHHHeEEecCC-HHHHHHHHHcCCce-eccCChHHHHHhCC
Confidence 4455667789999999999999999999999 89999999999755 88888777766654
No 122
>PLN02887 hydrolase family protein
Probab=99.04 E-value=4.5e-09 Score=93.53 Aligned_cols=62 Identities=16% Similarity=0.134 Sum_probs=54.3
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCChHHHHHhhh
Q 024886 195 VGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFSDVQNRIL 258 (261)
Q Consensus 195 ~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~~l~ 258 (261)
+..+-.|..+++.+++.+|++++++++|||+ .||++|.+.+|.++ .++++...+++.+++|.
T Consensus 502 ~p~gvSKG~ALk~L~e~lGI~~eeviAFGDs-~NDIeMLe~AG~gV-AMgNA~eeVK~~Ad~VT 563 (580)
T PLN02887 502 VPPGTSKGNGVKMLLNHLGVSPDEIMAIGDG-ENDIEMLQLASLGV-ALSNGAEKTKAVADVIG 563 (580)
T ss_pred ecCCCCHHHHHHHHHHHcCCCHHHEEEEecc-hhhHHHHHHCCCEE-EeCCCCHHHHHhCCEEe
Confidence 4456667789999999999999999999999 89999999999765 89999888888887764
No 123
>PRK10976 putative hydrolase; Provisional
Probab=99.03 E-value=1.2e-09 Score=89.03 Aligned_cols=59 Identities=14% Similarity=0.245 Sum_probs=51.1
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCChHHHHH
Q 024886 195 VGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFSDVQN 255 (261)
Q Consensus 195 ~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~ 255 (261)
...+-.|..+++.+++.+|++++++++|||+ .||++|.+.+|.+. .++++.+.+++.++
T Consensus 185 ~~~gvsKg~al~~l~~~lgi~~~~viafGD~-~NDi~Ml~~ag~~v-Am~NA~~~vK~~A~ 243 (266)
T PRK10976 185 MAGGVSKGHALEAVAKKLGYSLKDCIAFGDG-MNDAEMLSMAGKGC-IMGNAHQRLKDLLP 243 (266)
T ss_pred EcCCCChHHHHHHHHHHcCCCHHHeEEEcCC-cccHHHHHHcCCCe-eecCCcHHHHHhCC
Confidence 4455567789999999999999999999999 89999999999865 88898887777765
No 124
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=98.97 E-value=6.3e-09 Score=82.50 Aligned_cols=43 Identities=9% Similarity=0.011 Sum_probs=37.9
Q ss_pred CCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEE
Q 024886 198 EKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCW 241 (261)
Q Consensus 198 ~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i 241 (261)
+-.++.+++.+++.+|++++++++|||+ .||++|.+.+|.+++
T Consensus 177 ~~~Kg~al~~l~~~lgi~~~~vi~~GD~-~NDi~ml~~ag~~va 219 (221)
T TIGR02463 177 SSSKGKAANWLKATYNQPDVKTLGLGDG-PNDLPLLEVADYAVV 219 (221)
T ss_pred CCCHHHHHHHHHHHhCCCCCcEEEECCC-HHHHHHHHhCCceEE
Confidence 3345558999999999999999999999 899999999998764
No 125
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=98.97 E-value=1e-09 Score=82.48 Aligned_cols=97 Identities=7% Similarity=-0.011 Sum_probs=83.5
Q ss_pred eeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCccc-ccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEE
Q 024886 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVID-LFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTV 220 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~-~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l 220 (261)
....||+.++|+.|.+. +.++|+|++... ++.+++.++... +|+.+++.+.....+|+ |...++.+|.++++++
T Consensus 41 v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~ldp~~~~f~~~l~r~~~~~~~~~---~~K~L~~l~~~~~~vI 116 (162)
T TIGR02251 41 VFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDILDRGGKVISRRLYRESCVFTNGK---YVKDLSLVGKDLSKVI 116 (162)
T ss_pred EEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHHCcCCCEEeEEEEccccEEeCCC---EEeEchhcCCChhhEE
Confidence 47889999999999988 999999999987 799999998765 88988888776555655 6677888999999999
Q ss_pred EEcCCchhhhHHHHhCCCeEEEEC
Q 024886 221 HIGDDEKADKQGANSLGIDCWLWG 244 (261)
Q Consensus 221 ~iGD~~~~Di~~a~~~G~~~i~v~ 244 (261)
+|||+ +.++.++..+|+....+.
T Consensus 117 iVDD~-~~~~~~~~~NgI~i~~f~ 139 (162)
T TIGR02251 117 IIDNS-PYSYSLQPDNAIPIKSWF 139 (162)
T ss_pred EEeCC-hhhhccCccCEeecCCCC
Confidence 99998 899999999999887554
No 126
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=98.94 E-value=1.4e-08 Score=69.96 Aligned_cols=83 Identities=17% Similarity=0.207 Sum_probs=58.5
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCch----HHHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcE
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDT----RLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRT 219 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~----~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~ 219 (261)
.++||+.++++.|+++|.+++++||++. .....|+.+|+..-.+.++++... .-.++.+..+ ...+
T Consensus 14 ~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~ts~~~--------~~~~l~~~~~--~~~v 83 (101)
T PF13344_consen 14 EPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIITSGMA--------AAEYLKEHKG--GKKV 83 (101)
T ss_dssp EE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEEHHHH--------HHHHHHHHTT--SSEE
T ss_pred CcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEChHHH--------HHHHHHhcCC--CCEE
Confidence 7789999999999999999999999762 246777889987666777765431 3344444333 5778
Q ss_pred EEEcCCchhhhHHHHhCCC
Q 024886 220 VHIGDDEKADKQGANSLGI 238 (261)
Q Consensus 220 l~iGD~~~~Di~~a~~~G~ 238 (261)
+++|- ....+.++.+|+
T Consensus 84 ~vlG~--~~l~~~l~~~G~ 100 (101)
T PF13344_consen 84 YVLGS--DGLREELREAGF 100 (101)
T ss_dssp EEES---HHHHHHHHHTTE
T ss_pred EEEcC--HHHHHHHHHcCC
Confidence 88877 477778888886
No 127
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=98.93 E-value=5.9e-09 Score=84.56 Aligned_cols=61 Identities=8% Similarity=0.162 Sum_probs=49.8
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCChHHHHHhh
Q 024886 195 VGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFSDVQNRI 257 (261)
Q Consensus 195 ~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~~l 257 (261)
...+-.|...++.+++.+|++++++++|||+ .||++|++.+|++. .++++...+++.++++
T Consensus 183 ~~~~~~K~~~i~~~~~~~~~~~~~~~~~GD~-~nD~~m~~~~~~~~-a~~na~~~~k~~a~~~ 243 (256)
T TIGR00099 183 TAKGVSKGSALQSLAEALGISLEDVIAFGDG-MNDIEMLEAAGYGV-AMGNADEELKALADYV 243 (256)
T ss_pred cCCCCChHHHHHHHHHHcCCCHHHEEEeCCc-HHhHHHHHhCCcee-EecCchHHHHHhCCEE
Confidence 4456667889999999999999999999999 89999999999875 5666666555555544
No 128
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=98.93 E-value=6.6e-08 Score=77.44 Aligned_cols=91 Identities=9% Similarity=0.131 Sum_probs=65.1
Q ss_pred CeEEEEeCCc--hH---HHHHHHhcCcccccceEEec----CCCCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhH
Q 024886 161 VKVAVVSNFD--TR---LRKLLKDLNVIDLFDAVVIS----SEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQ 231 (261)
Q Consensus 161 ~~i~i~T~~~--~~---~~~~l~~~gl~~~f~~i~~~----~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~ 231 (261)
+++.+..... .. +...++..+.. +..+++. +-.+.+++|..+++.+++++|++++++++|||+ .||+.
T Consensus 113 ~~i~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~ei~~~~~~K~~al~~l~~~~g~~~~~~i~~GD~-~nD~~ 189 (236)
T TIGR02471 113 FKISYLLDPEGEPILPQIRQRLRQQSQA--AKVILSCGWFLDVLPLRASKGLALRYLSYRWGLPLEQILVAGDS-GNDEE 189 (236)
T ss_pred eeEEEEECcccchHHHHHHHHHHhccCC--EEEEEECCceEEEeeCCCChHHHHHHHHHHhCCCHHHEEEEcCC-ccHHH
Confidence 5666655432 11 23444444432 2333443 345567888899999999999999999999999 89999
Q ss_pred HHHhCCCeEEEECCCCCChHHHHH
Q 024886 232 GANSLGIDCWLWGIDVKTFSDVQN 255 (261)
Q Consensus 232 ~a~~~G~~~i~v~~~~~~~~el~~ 255 (261)
|++.+|.+. .|++..+.+++.++
T Consensus 190 ml~~~~~~i-av~na~~~~k~~a~ 212 (236)
T TIGR02471 190 MLRGLTLGV-VVGNHDPELEGLRH 212 (236)
T ss_pred HHcCCCcEE-EEcCCcHHHHHhhc
Confidence 999999666 78888777777766
No 129
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=98.90 E-value=1.5e-09 Score=84.09 Aligned_cols=110 Identities=19% Similarity=0.398 Sum_probs=65.4
Q ss_pred HHHHHHHHHhh---CCceeeCccHHHHHHHHHHCCCeEEEEeCCchH--------HHHHHHhc-CcccccceEEecCCCC
Q 024886 129 YFEEVYEYYAK---GEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR--------LRKLLKDL-NVIDLFDAVVISSEVG 196 (261)
Q Consensus 129 ~~~~~~~~~~~---~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~--------~~~~l~~~-gl~~~f~~i~~~~~~~ 196 (261)
..+.+.+.+.. ....++.||+.++|+.|.+.|+.++++|..+.. -..++++. |... ++.++.+.+
T Consensus 55 ~~~~~~~~~~~~~~f~~l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~-~~~~~~~~~-- 131 (191)
T PF06941_consen 55 FYEKLWRFYEEPGFFSNLPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIP-YDNLIFTGD-- 131 (191)
T ss_dssp HHHHHHHHHTSTTTTTT--B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHH-HCCEEEESS--
T ss_pred HHHHHHHHHhChhhhcCCCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCc-hheEEEecC--
Confidence 33444444433 234689999999999999999888888764421 14566654 3222 233443322
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCC----------CCChHHHHHhhh
Q 024886 197 CEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGID----------VKTFSDVQNRIL 258 (261)
Q Consensus 197 ~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~----------~~~~~el~~~l~ 258 (261)
|. .++.+ ++|.|+ +.++..+...|+++++++.+ +.+++|+.++|.
T Consensus 132 --K~----------~v~~D----vlIDD~-~~n~~~~~~~g~~~iLfd~p~Nr~~~~~~Rv~~W~ei~~~i~ 186 (191)
T PF06941_consen 132 --KT----------LVGGD----VLIDDR-PHNLEQFANAGIPVILFDQPYNRDESNFPRVNNWEEIEDLIL 186 (191)
T ss_dssp --GG----------GC--S----EEEESS-SHHHSS-SSESSEEEEE--GGGTT--TSEEE-STTSHHHHHH
T ss_pred --CC----------eEecc----EEecCC-hHHHHhccCCCceEEEEcCCCCCCCCCCccCCCHHHHHHHHH
Confidence 21 12222 789887 79999999999999988766 667888877774
No 130
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=1.1e-07 Score=70.33 Aligned_cols=89 Identities=15% Similarity=0.195 Sum_probs=65.5
Q ss_pred eeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccc-------cc----------eEEecC--CCCCCCCCH
Q 024886 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDL-------FD----------AVVISS--EVGCEKPDP 202 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~-------f~----------~i~~~~--~~~~~Kp~~ 202 (261)
+.+.||.++++++.++++.+++|+|++-.. +..+++.++-.+. ++ .+...+ ..|..||.
T Consensus 72 i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~ds~fG~dK~~- 150 (220)
T COG4359 72 IKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTDDSQFGHDKSS- 150 (220)
T ss_pred cccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecCceEcCCCceeeecCCccccCCCcch-
Confidence 488999999999999999999999998766 7888887752111 11 111112 24455655
Q ss_pred HHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCC
Q 024886 203 RIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGI 238 (261)
Q Consensus 203 ~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~ 238 (261)
.++.+.-+++.++|+||+ ..|+.+|+..-.
T Consensus 151 -----vI~~l~e~~e~~fy~GDs-vsDlsaaklsDl 180 (220)
T COG4359 151 -----VIHELSEPNESIFYCGDS-VSDLSAAKLSDL 180 (220)
T ss_pred -----hHHHhhcCCceEEEecCC-cccccHhhhhhh
Confidence 566666678889999999 899999987654
No 131
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.88 E-value=1.8e-08 Score=81.11 Aligned_cols=48 Identities=21% Similarity=0.266 Sum_probs=43.9
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCC
Q 024886 147 HGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSE 194 (261)
Q Consensus 147 ~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~ 194 (261)
|++.++|++|++.|++++|+||++.. +...++.+|+..+|+.++++++
T Consensus 151 p~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~yFDvII~~g~ 199 (303)
T PHA03398 151 PFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEGYFDIIICGGR 199 (303)
T ss_pred hhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCccccEEEECCC
Confidence 78999999999999999999998776 7899999999999998888764
No 132
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=98.87 E-value=6e-09 Score=83.89 Aligned_cols=58 Identities=14% Similarity=0.202 Sum_probs=48.0
Q ss_pred CCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCChHHHHHhh
Q 024886 198 EKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFSDVQNRI 257 (261)
Q Consensus 198 ~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~~l 257 (261)
+-.+..+++.+++.+|++++++++|||+ .||++|.+.+|.+. .++++.+.+++.++.+
T Consensus 184 ~vsK~~ai~~l~~~~~i~~~~~~~~GD~-~ND~~Ml~~~~~~~-am~na~~~~k~~a~~i 241 (254)
T PF08282_consen 184 GVSKGSAIKYLLEYLGISPEDIIAFGDS-ENDIEMLELAGYSV-AMGNATPELKKAADYI 241 (254)
T ss_dssp TSSHHHHHHHHHHHHTTSGGGEEEEESS-GGGHHHHHHSSEEE-EETTS-HHHHHHSSEE
T ss_pred CCCHHHHHHHHhhhcccccceeEEeecc-cccHhHHhhcCeEE-EEcCCCHHHHHhCCEE
Confidence 3445567899999999999999999999 89999999999665 8888877777776655
No 133
>COG4996 Predicted phosphatase [General function prediction only]
Probab=98.83 E-value=7.6e-09 Score=71.99 Aligned_cols=110 Identities=17% Similarity=0.260 Sum_probs=75.2
Q ss_pred eeeCccHHHHHHHHHHCCCeEEEEeCCch-HHHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHc------CCC
Q 024886 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDT-RLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQM------SVE 215 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g~~i~i~T~~~~-~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l------~~~ 215 (261)
+.++|.+++++++++++|+-++.+|=+.. ..-+.|+.+++..||+.++.-.. ..| ..++.++++++ .++
T Consensus 40 v~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral~~~~yFhy~ViePh--P~K--~~ML~~llr~i~~er~~~ik 115 (164)
T COG4996 40 VHLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRALDLLQYFHYIVIEPH--PYK--FLMLSQLLREINTERNQKIK 115 (164)
T ss_pred EEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHhchhhhEEEEEecCC--Chh--HHHHHHHHHHHHHhhccccC
Confidence 68999999999999999999999995454 47889999999999999886332 222 23666666665 478
Q ss_pred CCcEEEEcCCchhhhHHHHhC-C-CeEEEECCCCCChHHHHHhh
Q 024886 216 ASRTVHIGDDEKADKQGANSL-G-IDCWLWGIDVKTFSDVQNRI 257 (261)
Q Consensus 216 ~~~~l~iGD~~~~Di~~a~~~-G-~~~i~v~~~~~~~~el~~~l 257 (261)
|.+++|+.|. .--+.-.... | ..++-..-.+....++...+
T Consensus 116 P~~Ivy~DDR-~iH~~~Iwe~~G~V~~~~~~~Di~c~~ei~slL 158 (164)
T COG4996 116 PSEIVYLDDR-RIHFGNIWEYLGNVKCLEMWKDISCYSEIFSLL 158 (164)
T ss_pred cceEEEEecc-cccHHHHHHhcCCeeeeEeecchHHHHHHHHHH
Confidence 9999999664 5555444432 3 23332222334444444443
No 134
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=98.82 E-value=1.2e-08 Score=82.03 Aligned_cols=89 Identities=20% Similarity=0.211 Sum_probs=73.9
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HH--HHHHhcCccc-ccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcE
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LR--KLLKDLNVID-LFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRT 219 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~--~~l~~~gl~~-~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~ 219 (261)
.++||+.++|+.|+++|++++++||+.+. .. ..++.+|+.. +|+.++++..... ..+..++++++++++++
T Consensus 24 ~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~~~Ii~s~~~~~-----~~l~~~~~~~~~~~~~~ 98 (242)
T TIGR01459 24 HTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLPEMIISSGEIAV-----QMILESKKRFDIRNGII 98 (242)
T ss_pred ccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCccccceEEccHHHHH-----HHHHhhhhhccCCCceE
Confidence 78999999999999999999999997765 33 7889999987 8999998875432 36667778889999999
Q ss_pred EEEcCCchhhhHHHHhCCC
Q 024886 220 VHIGDDEKADKQGANSLGI 238 (261)
Q Consensus 220 l~iGD~~~~Di~~a~~~G~ 238 (261)
++|||+ ..|++.....|.
T Consensus 99 ~~vGd~-~~d~~~~~~~~~ 116 (242)
T TIGR01459 99 YLLGHL-ENDIINLMQCYT 116 (242)
T ss_pred EEeCCc-ccchhhhcCCCc
Confidence 999998 788877766554
No 135
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.81 E-value=4.9e-08 Score=79.83 Aligned_cols=53 Identities=8% Similarity=-0.007 Sum_probs=44.6
Q ss_pred CCCCCCCCCHHHHHHHHHHcCC---CCCcEEEEcCCchhhhHHHHhCCCeEEEECCCC
Q 024886 193 SEVGCEKPDPRIFKAALDQMSV---EASRTVHIGDDEKADKQGANSLGIDCWLWGIDV 247 (261)
Q Consensus 193 ~~~~~~Kp~~~~~~~~~~~l~~---~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~ 247 (261)
+-...+-.|..+++.+++.+|+ ++++++.|||+ .||++|.+.+|.++ .+++..
T Consensus 180 Ei~~~g~sKg~al~~l~~~lgi~~~~~~~viafGDs-~NDi~Ml~~ag~gv-AM~~~~ 235 (271)
T PRK03669 180 HVLDASAGKDQAANWLIATYQQLSGTRPTTLGLGDG-PNDAPLLDVMDYAV-VVKGLN 235 (271)
T ss_pred EEecCCCCHHHHHHHHHHHHHhhcCCCceEEEEcCC-HHHHHHHHhCCEEE-EecCCC
Confidence 3344566677899999999999 99999999999 89999999999765 666554
No 136
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=98.72 E-value=3.5e-08 Score=88.67 Aligned_cols=90 Identities=16% Similarity=0.265 Sum_probs=70.8
Q ss_pred eeCccHHHHHHHHHHCC-CeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEE
Q 024886 144 HLPHGAYQSILLLKDAG-VKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVH 221 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g-~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~ 221 (261)
+++||+.++++.|++.| ++++++||.+.. ...+++.+|+.++|..+. +++++. ++++++..+++++|
T Consensus 384 ~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~~~f~~~~-------p~~K~~----~v~~l~~~~~~v~~ 452 (556)
T TIGR01525 384 QLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGIDEVHAELL-------PEDKLA----IVKELQEEGGVVAM 452 (556)
T ss_pred cchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCCeeeccCC-------HHHHHH----HHHHHHHcCCEEEE
Confidence 57899999999999999 999999998877 799999999977775431 123333 44444446789999
Q ss_pred EcCCchhhhHHHHhCCCeEEEECCC
Q 024886 222 IGDDEKADKQGANSLGIDCWLWGID 246 (261)
Q Consensus 222 iGD~~~~Di~~a~~~G~~~i~v~~~ 246 (261)
|||+ .+|+.+++++|+.. .++++
T Consensus 453 vGDg-~nD~~al~~A~vgi-a~g~~ 475 (556)
T TIGR01525 453 VGDG-INDAPALAAADVGI-AMGAG 475 (556)
T ss_pred EECC-hhHHHHHhhCCEeE-EeCCC
Confidence 9999 89999999999654 55543
No 137
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=98.70 E-value=3.5e-08 Score=88.16 Aligned_cols=88 Identities=14% Similarity=0.232 Sum_probs=71.1
Q ss_pred eeCccHHHHHHHHHHCCC-eEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEE
Q 024886 144 HLPHGAYQSILLLKDAGV-KVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVH 221 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~-~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~ 221 (261)
+++||+.++++.|++.|+ +++++||.+.. ...+++.+|+.++|..+. +.++ ..++++++..+++++|
T Consensus 362 ~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~~~f~~~~-------p~~K----~~~i~~l~~~~~~v~~ 430 (536)
T TIGR01512 362 EPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGIDEVHAELL-------PEDK----LEIVKELREKYGPVAM 430 (536)
T ss_pred cchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCChhhhhccC-------cHHH----HHHHHHHHhcCCEEEE
Confidence 578999999999999999 99999998877 799999999987775432 1223 3355556666789999
Q ss_pred EcCCchhhhHHHHhCCCeEEEEC
Q 024886 222 IGDDEKADKQGANSLGIDCWLWG 244 (261)
Q Consensus 222 iGD~~~~Di~~a~~~G~~~i~v~ 244 (261)
|||+ .+|+.+++.+|+. +.++
T Consensus 431 vGDg-~nD~~al~~A~vg-ia~g 451 (536)
T TIGR01512 431 VGDG-INDAPALAAADVG-IAMG 451 (536)
T ss_pred EeCC-HHHHHHHHhCCEE-EEeC
Confidence 9999 8999999999974 4565
No 138
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=98.60 E-value=7.4e-07 Score=66.53 Aligned_cols=93 Identities=14% Similarity=0.178 Sum_probs=60.3
Q ss_pred eCccHHHHHHHHHHCCCeEEEEeCCchH-H---HHHHHhc---C--cccccceEEecCCC---------CCCCC---CHH
Q 024886 145 LPHGAYQSILLLKDAGVKVAVVSNFDTR-L---RKLLKDL---N--VIDLFDAVVISSEV---------GCEKP---DPR 203 (261)
Q Consensus 145 ~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~---~~~l~~~---g--l~~~f~~i~~~~~~---------~~~Kp---~~~ 203 (261)
..|++.++++.++++|+++.++|+.+.. . ..+++.+ | +. ...++++... -..+| +.+
T Consensus 28 ~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp--~g~li~~~g~~~~~~~~e~i~~~~~~~K~~ 105 (157)
T smart00775 28 THPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLP--HGPVLLSPDRLFAALHREVISKKPEVFKIA 105 (157)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccccCC--CceEEEcCCcchhhhhcccccCCHHHHHHH
Confidence 3588999999999999999999998855 3 4677662 2 32 1344444331 12333 334
Q ss_pred HHHHHHHHcCCCCCcEE-EEcCCchhhhHHHHhCCCeE
Q 024886 204 IFKAALDQMSVEASRTV-HIGDDEKADKQGANSLGIDC 240 (261)
Q Consensus 204 ~~~~~~~~l~~~~~~~l-~iGD~~~~Di~~a~~~G~~~ 240 (261)
..+.+.+.+.-.--..+ .+|+. .+|+++=+++|+..
T Consensus 106 ~l~~i~~~~~~~~~~f~~~~gn~-~~D~~~y~~~gi~~ 142 (157)
T smart00775 106 CLRDIKSLFPPQGNPFYAGFGNR-ITDVISYSAVGIPP 142 (157)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCC-chhHHHHHHcCCCh
Confidence 55566665542223344 47765 89999999999974
No 139
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=98.59 E-value=1.4e-06 Score=68.39 Aligned_cols=97 Identities=13% Similarity=0.107 Sum_probs=64.6
Q ss_pred eeeCccHHHHHHHHHHCCCeEEEEeCCchHH----HHHHHhcCcccccceEEecCCCCCCCCC----HHHHHHHHH-HcC
Q 024886 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTRL----RKLLKDLNVIDLFDAVVISSEVGCEKPD----PRIFKAALD-QMS 213 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~~----~~~l~~~gl~~~f~~i~~~~~~~~~Kp~----~~~~~~~~~-~l~ 213 (261)
.++.|++.++++.|+++|++|+++|+.+... ...|...|+..+ +.++--......|+. .+....+.+ .+.
T Consensus 119 apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~-~~LiLR~~~d~~~~~~~yKs~~R~~l~~~GYr 197 (229)
T TIGR01675 119 APALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGW-KHLILRGLEDSNKTVVTYKSEVRKSLMEEGYR 197 (229)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCc-CeeeecCCCCCCchHhHHHHHHHHHHHhCCce
Confidence 4889999999999999999999999988542 466778887644 656554322223332 222323332 233
Q ss_pred CCCCcEEEEcCCchhhhHHHHhCCCeEEEECCC
Q 024886 214 VEASRTVHIGDDEKADKQGANSLGIDCWLWGID 246 (261)
Q Consensus 214 ~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~ 246 (261)
| +..|||+ .+|+... .+|.++.-.+++
T Consensus 198 I----v~~iGDq-~sDl~G~-~~~~RtFKLPNP 224 (229)
T TIGR01675 198 I----WGNIGDQ-WSDLLGS-PPGRRTFKLPNP 224 (229)
T ss_pred E----EEEECCC-hHHhcCC-CccCceeeCCCC
Confidence 3 5789999 6999654 466677666665
No 140
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=98.59 E-value=4.9e-07 Score=73.33 Aligned_cols=52 Identities=13% Similarity=0.080 Sum_probs=44.3
Q ss_pred CCCCCCCHHHHHHHHHHcCCC--CCcEEEEcCCchhhhHHHHhCCCeEEEECCCCC
Q 024886 195 VGCEKPDPRIFKAALDQMSVE--ASRTVHIGDDEKADKQGANSLGIDCWLWGIDVK 248 (261)
Q Consensus 195 ~~~~Kp~~~~~~~~~~~l~~~--~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~ 248 (261)
.+.+-.+...++.+++.+|++ ++++++|||+ .||+.|.+.+|.++ .++++.+
T Consensus 171 ~~~~~~Kg~ai~~l~~~~~i~~~~~~~~a~GD~-~ND~~Ml~~ag~~v-am~Na~~ 224 (256)
T TIGR01486 171 LGAGSDKGKAANALKQFYNQPGGAIKVVGLGDS-PNDLPLLEVVDLAV-VVPGPNG 224 (256)
T ss_pred ecCCCCHHHHHHHHHHHHhhcCCCceEEEEcCC-HhhHHHHHHCCEEE-EeCCCCC
Confidence 344566777899999999999 9999999999 89999999999666 7777763
No 141
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=98.58 E-value=7.7e-08 Score=86.40 Aligned_cols=89 Identities=13% Similarity=0.231 Sum_probs=68.7
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEE
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHI 222 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~i 222 (261)
+++||+.++++.|++.|++++++|+.... .+.+.+.+|++ +| ++.. ++++.+.+ ++++.++++++||
T Consensus 405 ~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~-~~-----~~~~--p~~K~~~v----~~l~~~~~~v~~V 472 (562)
T TIGR01511 405 QLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN-VR-----AEVL--PDDKAALI----KELQEKGRVVAMV 472 (562)
T ss_pred cccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc-EE-----ccCC--hHHHHHHH----HHHHHcCCEEEEE
Confidence 56899999999999999999999998877 79999999984 22 2211 23333344 4444467899999
Q ss_pred cCCchhhhHHHHhCCCeEEEECCC
Q 024886 223 GDDEKADKQGANSLGIDCWLWGID 246 (261)
Q Consensus 223 GD~~~~Di~~a~~~G~~~i~v~~~ 246 (261)
||+ .+|+.+++.+|+. +.++.+
T Consensus 473 GDg-~nD~~al~~A~vg-ia~g~g 494 (562)
T TIGR01511 473 GDG-INDAPALAQADVG-IAIGAG 494 (562)
T ss_pred eCC-CccHHHHhhCCEE-EEeCCc
Confidence 999 8999999999985 466655
No 142
>PRK10671 copA copper exporting ATPase; Provisional
Probab=98.55 E-value=2.2e-07 Score=87.39 Aligned_cols=90 Identities=13% Similarity=0.232 Sum_probs=73.0
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEE
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHI 222 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~i 222 (261)
+++||+.+.++.|++.|++++++|+.... .+.+.+.+|+.++|..+. |+-...++++++..++++++|
T Consensus 650 ~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~lgi~~~~~~~~-----------p~~K~~~i~~l~~~~~~v~~v 718 (834)
T PRK10671 650 PLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGIDEVIAGVL-----------PDGKAEAIKRLQSQGRQVAMV 718 (834)
T ss_pred cchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCEEEeCCC-----------HHHHHHHHHHHhhcCCEEEEE
Confidence 46899999999999999999999998777 688999999976554321 223445777777788999999
Q ss_pred cCCchhhhHHHHhCCCeEEEECCC
Q 024886 223 GDDEKADKQGANSLGIDCWLWGID 246 (261)
Q Consensus 223 GD~~~~Di~~a~~~G~~~i~v~~~ 246 (261)
||+ .||+.+++.+|+ .+.++++
T Consensus 719 GDg-~nD~~al~~Agv-gia~g~g 740 (834)
T PRK10671 719 GDG-INDAPALAQADV-GIAMGGG 740 (834)
T ss_pred eCC-HHHHHHHHhCCe-eEEecCC
Confidence 999 899999999999 4467766
No 143
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=98.52 E-value=4.4e-06 Score=64.25 Aligned_cols=101 Identities=15% Similarity=0.138 Sum_probs=78.4
Q ss_pred eeeCccHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh-c---CcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCc
Q 024886 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTRLRKLLKD-L---NVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASR 218 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~~~~~l~~-~---gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~ 218 (261)
...++++...++..+..|.+++|.|.+...+++.+=. . .+..++++.+-.. + ..|-....|..+.+.+|.++.+
T Consensus 122 ~~v~aDv~~a~e~w~~~g~~vyIYSSgsv~AqKllfg~s~~gdl~~y~~gyfDt~-i-G~K~e~~sy~~I~~~Ig~s~~e 199 (254)
T KOG2630|consen 122 AHVYADVLPAIERWSGEGVRVYIYSSGSVAAQKLLFGYSDAGDLRKYISGYFDTT-I-GLKVESQSYKKIGHLIGKSPRE 199 (254)
T ss_pred ccccchhHHHHHHHhhcCceEEEEcCCcHHHHHHHHcccCcchHHHHhhhhhhcc-c-cceehhHHHHHHHHHhCCChhh
Confidence 4789999999999999999999999988775444332 2 2233333333221 2 2466677899999999999999
Q ss_pred EEEEcCCchhhhHHHHhCCCeEEEECCC
Q 024886 219 TVHIGDDEKADKQGANSLGIDCWLWGID 246 (261)
Q Consensus 219 ~l~iGD~~~~Di~~a~~~G~~~i~v~~~ 246 (261)
+++.-|. .....+|+.+|+.+.++.++
T Consensus 200 iLfLTd~-~~Ea~aa~~aGl~a~l~~rP 226 (254)
T KOG2630|consen 200 ILFLTDV-PREAAAARKAGLQAGLVSRP 226 (254)
T ss_pred eEEeccC-hHHHHHHHhcccceeeeecC
Confidence 9999998 89999999999999887776
No 144
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=98.51 E-value=1.9e-06 Score=68.84 Aligned_cols=101 Identities=14% Similarity=0.101 Sum_probs=64.7
Q ss_pred eeeCccHHHHHHHHHHCCCeEEEEeCCchHH----HHHHHhcCcccccceEEecCCCCCCCCCHHHHH-----HHHH-Hc
Q 024886 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTRL----RKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFK-----AALD-QM 212 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~~----~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~-----~~~~-~l 212 (261)
.++.|++.++.+.++++|++|+++|+.+... ...|++.|+..+ +.++--......+.+...|+ ++.+ .+
T Consensus 144 ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~~-~~LiLR~~~D~~~~~av~yKs~~R~~li~eGY 222 (275)
T TIGR01680 144 APALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHTW-EKLILKDPQDNSAENAVEYKTAARAKLIQEGY 222 (275)
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCCc-ceeeecCCCCCccchhHHHHHHHHHHHHHcCc
Confidence 5889999999999999999999999987542 456777787643 55554432111222222222 2222 23
Q ss_pred CCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCC
Q 024886 213 SVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKT 249 (261)
Q Consensus 213 ~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~ 249 (261)
.| +..|||+ -+|+.+....+-++.-.+++..+
T Consensus 223 rI----v~~iGDq-~sDl~G~~~g~~RtFKLPNP~~~ 254 (275)
T TIGR01680 223 NI----VGIIGDQ-WNDLKGEHRGAIRSFKLPNPCTT 254 (275)
T ss_pred eE----EEEECCC-HHhccCCCccCcceecCCCcccc
Confidence 33 5789998 69996665334577777777443
No 145
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=98.51 E-value=2e-07 Score=74.01 Aligned_cols=99 Identities=17% Similarity=0.151 Sum_probs=64.1
Q ss_pred eeeCccHHHHHHHHHHCCCeEEEEeCCchH-H---HHHHHhcCcccccceEEe-cCCCCCC----CCCHHHHHHHHHH-c
Q 024886 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTR-L---RKLLKDLNVIDLFDAVVI-SSEVGCE----KPDPRIFKAALDQ-M 212 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~---~~~l~~~gl~~~f~~i~~-~~~~~~~----Kp~~~~~~~~~~~-l 212 (261)
.++.||+.++++.++++|+.|+++||.+.. . ..-|+..|...+ +.++. .+..... .-+..-...+.++ +
T Consensus 114 ~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~~~-~~l~lr~~~~~~~~~~~~yK~~~r~~i~~~Gy 192 (229)
T PF03767_consen 114 APAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKAGFPGW-DHLILRPDKDPSKKSAVEYKSERRKEIEKKGY 192 (229)
T ss_dssp GEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHHTTSTB-SCGEEEEESSTSS------SHHHHHHHHHTTE
T ss_pred CcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHcCCCcc-chhccccccccccccccccchHHHHHHHHcCC
Confidence 488999999999999999999999997644 2 556777886533 43332 2221111 1133445556555 4
Q ss_pred CCCCCcEEEEcCCchhhhHHHHhC---CCeEEEECCCC
Q 024886 213 SVEASRTVHIGDDEKADKQGANSL---GIDCWLWGIDV 247 (261)
Q Consensus 213 ~~~~~~~l~iGD~~~~Di~~a~~~---G~~~i~v~~~~ 247 (261)
.| +.+|||+ .+|+..++.. |-+.+..+++.
T Consensus 193 ~I----i~~iGD~-~~D~~~~~~~~~~~~r~f~lPNp~ 225 (229)
T PF03767_consen 193 RI----IANIGDQ-LSDFSGAKTAGARAERWFKLPNPM 225 (229)
T ss_dssp EE----EEEEESS-GGGCHCTHHHHHHHTTEEE-TTSS
T ss_pred cE----EEEeCCC-HHHhhcccccccccceEEEcCCCC
Confidence 55 7899999 7999884332 34566666553
No 146
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=98.50 E-value=7.7e-06 Score=73.45 Aligned_cols=51 Identities=10% Similarity=0.074 Sum_probs=42.4
Q ss_pred CCCCHHHHHHHHHHcCCCCCcEEEE--cCCchhhhHHHHhCCCeEEEECCCCCCh
Q 024886 198 EKPDPRIFKAALDQMSVEASRTVHI--GDDEKADKQGANSLGIDCWLWGIDVKTF 250 (261)
Q Consensus 198 ~Kp~~~~~~~~~~~l~~~~~~~l~i--GD~~~~Di~~a~~~G~~~i~v~~~~~~~ 250 (261)
+-.|..+++.+++.+|++.++++.| ||+ .||+.|.+.+|.++ .++.+...+
T Consensus 611 gvdKG~AL~~L~e~~gI~~~eViafalGDs-~NDisMLe~Ag~gV-AM~~~~~~~ 663 (694)
T PRK14502 611 GNDKGKAIKILNELFRLNFGNIHTFGLGDS-ENDYSMLETVDSPI-LVQRPGNKW 663 (694)
T ss_pred CCCHHHHHHHHHHHhCCCccceEEEEcCCc-HhhHHHHHhCCceE-EEcCCCCCC
Confidence 4556779999999999999999999 999 89999999999876 555554433
No 147
>PTZ00174 phosphomannomutase; Provisional
Probab=98.44 E-value=3.5e-07 Score=73.75 Aligned_cols=60 Identities=10% Similarity=-0.090 Sum_probs=50.3
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCcEEEEcC----CchhhhHHHHhCCCeEEEECCCCCChHHHHHhhhc
Q 024886 195 VGCEKPDPRIFKAALDQMSVEASRTVHIGD----DEKADKQGANSLGIDCWLWGIDVKTFSDVQNRILI 259 (261)
Q Consensus 195 ~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD----~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~~l~~ 259 (261)
...+-.|..+++.+++. ++++++||| + .||++|.+.+|..++.|.++.+.++.+++++.+
T Consensus 183 ~~~gvsKg~al~~L~~~----~~eviafGD~~~~~-~NDieMl~~~~~~g~~v~n~~~~~~~~~~~~~~ 246 (247)
T PTZ00174 183 FPKGWDKTYCLRHLEND----FKEIHFFGDKTFEG-GNDYEIYNDPRTIGHSVKNPEDTIKILKELFLK 246 (247)
T ss_pred eeCCCcHHHHHHHHHhh----hhhEEEEcccCCCC-CCcHhhhhcCCCceEEeCCHHHHHHHHHHHhcC
Confidence 44556677789999988 699999999 7 799999999988888898888888888887754
No 148
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=98.41 E-value=1e-06 Score=70.96 Aligned_cols=51 Identities=10% Similarity=0.059 Sum_probs=39.5
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCC
Q 024886 196 GCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVK 248 (261)
Q Consensus 196 ~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~ 248 (261)
+..-.|..+..++++++++++++++++||| .||+.|. ..+..+|.|++...
T Consensus 161 P~~a~K~~Al~~L~~~~~~~~~~vl~aGDS-gND~~mL-~~~~~~vvV~Na~~ 211 (247)
T PF05116_consen 161 PKGASKGAALRYLMERWGIPPEQVLVAGDS-GNDLEML-EGGDHGVVVGNAQP 211 (247)
T ss_dssp ETT-SHHHHHHHHHHHHT--GGGEEEEESS-GGGHHHH-CCSSEEEE-TTS-H
T ss_pred cCCCCHHHHHHHHHHHhCCCHHHEEEEeCC-CCcHHHH-cCcCCEEEEcCCCH
Confidence 344557779999999999999999999999 8999999 67778889988543
No 149
>PLN02382 probable sucrose-phosphatase
Probab=98.40 E-value=7.8e-06 Score=70.65 Aligned_cols=58 Identities=9% Similarity=-0.000 Sum_probs=48.8
Q ss_pred CCCCCCCHHHHHHHHHHc---CCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCChHHH
Q 024886 195 VGCEKPDPRIFKAALDQM---SVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFSDV 253 (261)
Q Consensus 195 ~~~~Kp~~~~~~~~~~~l---~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~el 253 (261)
++.+-.|..+++.+++.+ |++++++++|||+ .||++|.+.+|..++.++++...+++.
T Consensus 170 ~p~g~sKg~Al~~L~~~~~~~gi~~~~~iafGDs-~NDleMl~~ag~~gvam~NA~~elk~~ 230 (413)
T PLN02382 170 LPQGAGKGQALAYLLKKLKAEGKAPVNTLVCGDS-GNDAELFSVPDVYGVMVSNAQEELLQW 230 (413)
T ss_pred EeCCCCHHHHHHHHHHHhhhcCCChhcEEEEeCC-HHHHHHHhcCCCCEEEEcCCcHHHHHH
Confidence 334555677999999999 9999999999999 899999999996666888887766654
No 150
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=98.32 E-value=2.2e-05 Score=62.32 Aligned_cols=42 Identities=19% Similarity=0.230 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHcCC--CCCcEEEEcCCchhhhHHHHhCCCeEE
Q 024886 199 KPDPRIFKAALDQMSV--EASRTVHIGDDEKADKQGANSLGIDCW 241 (261)
Q Consensus 199 Kp~~~~~~~~~~~l~~--~~~~~l~iGD~~~~Di~~a~~~G~~~i 241 (261)
-.+..+.+.+++.+++ +++++++|||+ .||+.|.+.+|++++
T Consensus 180 ~sK~~al~~l~~~~~~~~~~~~~i~~GD~-~nD~~ml~~ag~~v~ 223 (225)
T TIGR02461 180 SDKGKAIKRLLDLYKLRPGAIESVGLGDS-ENDFPMFEVVDLAFL 223 (225)
T ss_pred CCHHHHHHHHHHHhccccCcccEEEEcCC-HHHHHHHHhCCCcEe
Confidence 3345588888888866 67799999999 899999999998764
No 151
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=98.29 E-value=5e-06 Score=61.42 Aligned_cols=92 Identities=16% Similarity=0.183 Sum_probs=61.6
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCchH-H----HHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEE
Q 024886 147 HGAYQSILLLKDAGVKVAVVSNFDTR-L----RKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVH 221 (261)
Q Consensus 147 ~g~~~~l~~L~~~g~~i~i~T~~~~~-~----~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~ 221 (261)
.-+++++.-..+.|-.|+.+|+.... . ..+-+.+.+......++..+.. ||...--...++..++. ++
T Consensus 117 evA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~~m~pv~f~Gdk~---k~~qy~Kt~~i~~~~~~----Ih 189 (237)
T COG3700 117 EVARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHITNMNPVIFAGDKP---KPGQYTKTQWIQDKNIR----IH 189 (237)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhcccCCCcceeeccCCC---CcccccccHHHHhcCce----EE
Confidence 34567777777889999999986632 2 3334456676555566654432 33322334456666664 89
Q ss_pred EcCCchhhhHHHHhCCCeEEEECCC
Q 024886 222 IGDDEKADKQGANSLGIDCWLWGID 246 (261)
Q Consensus 222 iGD~~~~Di~~a~~~G~~~i~v~~~ 246 (261)
+||+ .+||.+|+++|.+.|-+-+.
T Consensus 190 YGDS-D~Di~AAkeaG~RgIRilRA 213 (237)
T COG3700 190 YGDS-DNDITAAKEAGARGIRILRA 213 (237)
T ss_pred ecCC-chhhhHHHhcCccceeEEec
Confidence 9999 99999999999998755443
No 152
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=98.23 E-value=3.3e-06 Score=79.89 Aligned_cols=99 Identities=12% Similarity=0.172 Sum_probs=78.4
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCC----------------CCCCCHHHHH
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVG----------------CEKPDPRIFK 206 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~----------------~~Kp~~~~~~ 206 (261)
+++||+.+.++.|++.|+++.++|+.... ...+.+..|+...++.++...+.. .....|+--.
T Consensus 528 p~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~~~~~~Vfar~~P~~K~ 607 (884)
T TIGR01522 528 PPRPGVKEAVTTLITGGVRIIMITGDSQETAVSIARRLGMPSKTSQSVSGEKLDAMDDQQLSQIVPKVAVFARASPEHKM 607 (884)
T ss_pred cchhHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCCceeEhHHhHhCCHHHHHHHhhcCeEEEECCHHHHH
Confidence 46899999999999999999999998877 799999999987666554443322 2235566667
Q ss_pred HHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEEC
Q 024886 207 AALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWG 244 (261)
Q Consensus 207 ~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~ 244 (261)
.+++.++-..+.+.|+||. .||+.+++.|+++. .++
T Consensus 608 ~iv~~lq~~g~~v~mvGDG-vND~pAl~~AdVGi-a~g 643 (884)
T TIGR01522 608 KIVKALQKRGDVVAMTGDG-VNDAPALKLADIGV-AMG 643 (884)
T ss_pred HHHHHHHHCCCEEEEECCC-cccHHHHHhCCeeE-ecC
Confidence 7777776667899999999 89999999999765 455
No 153
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=98.21 E-value=4.1e-05 Score=53.74 Aligned_cols=92 Identities=15% Similarity=0.188 Sum_probs=75.5
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEE
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHI 222 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~i 222 (261)
++|+.+.+.+++|++- +.++|+|+.... +....+..|+. .+.++. -.+++.-..++++++-+-+.+++|
T Consensus 30 klf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~lae~~gi~--~~rv~a-------~a~~e~K~~ii~eLkk~~~k~vmV 99 (152)
T COG4087 30 KLFSEVSETIQELHDM-VDIYIASGDRKGSLVQLAEFVGIP--VERVFA-------GADPEMKAKIIRELKKRYEKVVMV 99 (152)
T ss_pred EEcHhhHHHHHHHHHh-heEEEecCCcchHHHHHHHHcCCc--eeeeec-------ccCHHHHHHHHHHhcCCCcEEEEe
Confidence 7899999999999999 999999986655 78888888865 344432 235667888999999888999999
Q ss_pred cCCchhhhHHHHhCCCeEEEECCC
Q 024886 223 GDDEKADKQGANSLGIDCWLWGID 246 (261)
Q Consensus 223 GD~~~~Di~~a~~~G~~~i~v~~~ 246 (261)
||. .||+-+.+++....+.+++.
T Consensus 100 GnG-aND~laLr~ADlGI~tiq~e 122 (152)
T COG4087 100 GNG-ANDILALREADLGICTIQQE 122 (152)
T ss_pred cCC-cchHHHhhhcccceEEeccC
Confidence 998 89999999998887666643
No 154
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.17 E-value=0.00014 Score=59.05 Aligned_cols=44 Identities=16% Similarity=0.076 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHHHcCCC--CCcEEEEcCCchhhhHHHHhCCCeEEE
Q 024886 198 EKPDPRIFKAALDQMSVE--ASRTVHIGDDEKADKQGANSLGIDCWL 242 (261)
Q Consensus 198 ~Kp~~~~~~~~~~~l~~~--~~~~l~iGD~~~~Di~~a~~~G~~~i~ 242 (261)
+-++..+.+.+.+.+.-. +-.++.+||+ +||+.|.+.+-..++.
T Consensus 206 ~~dKg~A~~~L~~~y~~~~~~~~tiaLGDs-pND~~mLe~~D~~vvi 251 (302)
T PRK12702 206 SLPGEQAVQLLLDCYQRHLGPIKALGIGCS-PPDLAFLRWSEQKVVL 251 (302)
T ss_pred CCCHHHHHHHHHHHHHhccCCceEEEecCC-hhhHHHHHhCCeeEEe
Confidence 445667888888887654 5589999999 8999999999988754
No 155
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=98.17 E-value=1.2e-05 Score=69.55 Aligned_cols=103 Identities=17% Similarity=0.153 Sum_probs=69.6
Q ss_pred eeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhc---------CcccccceEEecCC-----------------C
Q 024886 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDL---------NVIDLFDAVVISSE-----------------V 195 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~---------gl~~~f~~i~~~~~-----------------~ 195 (261)
+..-|.+..+|+.|+++|.+++++||++-+ ....++.+ .+.++||.|++.-. .
T Consensus 182 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlFDvVIv~A~KP~FF~~~~pfr~vd~~~ 261 (448)
T PF05761_consen 182 IHKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLFDVVIVDARKPGFFTEGRPFREVDTET 261 (448)
T ss_dssp EE--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCECEEEES--CCHHHCT---EEEEETTT
T ss_pred ccCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhheeEEEEcCCCCcccCCCCceEEEECCC
Confidence 445688999999999999999999999866 55555532 46789999987521 1
Q ss_pred C---CCC------C----CHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhC-CCeEEEECC
Q 024886 196 G---CEK------P----DPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSL-GIDCWLWGI 245 (261)
Q Consensus 196 ~---~~K------p----~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~-G~~~i~v~~ 245 (261)
+ .++ + .......+.+.+|....+++||||+...||..++.. ||.+++|-.
T Consensus 262 g~l~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~g~~VLY~GDhi~~Di~~~k~~~gWrT~~Ii~ 325 (448)
T PF05761_consen 262 GKLKWGKYVGPLEKGKVYSGGNWDQLHKLLGWRGKEVLYFGDHIYGDILKSKKRHGWRTAAIIP 325 (448)
T ss_dssp SSEECS---SS--TC-EEEE--HHHHHHHCT--GGGEEEEESSTTTTHHHHHHHH-SEEEEE-T
T ss_pred CccccccccccccCCCEeecCCHHHHHHHHccCCCeEEEECCchhhhhhhhccccceEEEEEeh
Confidence 1 011 0 112367888889999999999999999999988888 999988843
No 156
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=98.16 E-value=0.00012 Score=64.44 Aligned_cols=93 Identities=9% Similarity=0.086 Sum_probs=56.5
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHh-cCccccc--------ceEEecCCCCC-CCCCHHHHHHHHHHc
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKD-LNVIDLF--------DAVVISSEVGC-EKPDPRIFKAALDQM 212 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~-~gl~~~f--------~~i~~~~~~~~-~Kp~~~~~~~~~~~l 212 (261)
.+.|.+.+ .++++|.. +|+|+++.. ++.+.+. +|++..+ ++.+++.-.+. .--..+-...+.+.+
T Consensus 110 ~l~~~a~~---~~~~~g~~-vvVSASp~~~Vepfa~~~LGid~VIgTeLev~~~G~~TG~i~g~~~c~Ge~Kv~rl~~~~ 185 (497)
T PLN02177 110 DVHPETWR---VFNSFGKR-YIITASPRIMVEPFVKTFLGADKVLGTELEVSKSGRATGFMKKPGVLVGDHKRDAVLKEF 185 (497)
T ss_pred hcCHHHHH---HHHhCCCE-EEEECCcHHHHHHHHHHcCCCCEEEecccEECcCCEEeeeecCCCCCccHHHHHHHHHHh
Confidence 35555554 44567755 999998887 7999976 7865331 22222221111 000112344455667
Q ss_pred CCCCCcEEEEcCCchhhhHHHHhCCCeEEE
Q 024886 213 SVEASRTVHIGDDEKADKQGANSLGIDCWL 242 (261)
Q Consensus 213 ~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~ 242 (261)
|.+..+ +.+||+ .+|..+...++-..+.
T Consensus 186 g~~~~~-~aYgDS-~sD~plL~~a~e~y~V 213 (497)
T PLN02177 186 GDALPD-LGLGDR-ETDHDFMSICKEGYMV 213 (497)
T ss_pred CCCCce-EEEECC-ccHHHHHHhCCccEEe
Confidence 765555 899999 7999999999976643
No 157
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=1.5e-05 Score=58.25 Aligned_cols=88 Identities=19% Similarity=0.175 Sum_probs=61.9
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchHH----HHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcE
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTRL----RKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRT 219 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~~----~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~ 219 (261)
.+..++...|..++++ .+++.+|+...++ ..++..-.+. ++.+...+. ..| -..++.++++
T Consensus 72 l~~q~v~~~L~~~~e~-~~L~~itar~~dl~~iT~~~l~~q~ih--~~~l~i~g~--h~K------V~~vrth~id---- 136 (194)
T COG5663 72 LLAQLVKQVLPSLKEE-HRLIYITARKADLTRITYAWLFIQNIH--YDHLEIVGL--HHK------VEAVRTHNID---- 136 (194)
T ss_pred HHHHHHHHHhHHHHhh-ceeeeeehhhHHHHHHHHHHHHHhccc--hhhhhhhcc--ccc------chhhHhhccC----
Confidence 4456777888888877 7899999876654 4555555432 454433221 122 2357778887
Q ss_pred EEEcCCchhhhHHHHhCCCeEEEECCC
Q 024886 220 VHIGDDEKADKQGANSLGIDCWLWGID 246 (261)
Q Consensus 220 l~iGD~~~~Di~~a~~~G~~~i~v~~~ 246 (261)
+++.|+.++-++.|+++|++++.+++.
T Consensus 137 lf~ed~~~na~~iAk~~~~~vilins~ 163 (194)
T COG5663 137 LFFEDSHDNAGQIAKNAGIPVILINSP 163 (194)
T ss_pred ccccccCchHHHHHHhcCCcEEEecCc
Confidence 799999999999999999999999776
No 158
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=98.12 E-value=2.9e-05 Score=60.36 Aligned_cols=84 Identities=17% Similarity=0.160 Sum_probs=59.5
Q ss_pred eeeCccHHHHHHHHHHCCCeEEEEeCCchH--H---HHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCC
Q 024886 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTR--L---RKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEAS 217 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~--~---~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~ 217 (261)
..+.||+.++++..-.+|..|+.+||.+.+ . ..-|.+.|+....+.-+--- ...|++..-++.+.+.+.+
T Consensus 121 sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~g~~~~~~~~~llk--k~~k~Ke~R~~~v~k~~~i--- 195 (274)
T COG2503 121 SKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENLKSEGLPQVLESHLLLK--KDKKSKEVRRQAVEKDYKI--- 195 (274)
T ss_pred cccCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHHHHcCcccccccceEEe--eCCCcHHHHHHHHhhccce---
Confidence 488999999999999999999999998754 2 34566778765443222211 2356666667777775554
Q ss_pred cEEEEcCCchhhhHHH
Q 024886 218 RTVHIGDDEKADKQGA 233 (261)
Q Consensus 218 ~~l~iGD~~~~Di~~a 233 (261)
++.|||+ ..|....
T Consensus 196 -Vm~vGDN-l~DF~d~ 209 (274)
T COG2503 196 -VMLVGDN-LDDFGDN 209 (274)
T ss_pred -eeEecCc-hhhhcch
Confidence 8999998 5886543
No 159
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=98.09 E-value=5.3e-06 Score=62.20 Aligned_cols=92 Identities=15% Similarity=0.173 Sum_probs=59.5
Q ss_pred eeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCc-ccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEE
Q 024886 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNV-IDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTV 220 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl-~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l 220 (261)
+.+.||+.++|+.+.+. +.++|.|.+... +..+++.+.- ..+|+.++..+.....+.. +..-++.+|-++++++
T Consensus 35 v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~ya~~v~~~ldp~~~~~~~~~~r~~~~~~~~~---~~KdL~~l~~~~~~vv 110 (159)
T PF03031_consen 35 VKLRPGLDEFLEELSKH-YEVVIWTSASEEYAEPVLDALDPNGKLFSRRLYRDDCTFDKGS---YIKDLSKLGRDLDNVV 110 (159)
T ss_dssp EEE-TTHHHHHHHHHHH-CEEEEE-SS-HHHHHHHHHHHTTTTSSEEEEEEGGGSEEETTE---EE--GGGSSS-GGGEE
T ss_pred EeeCchHHHHHHHHHHh-ceEEEEEeehhhhhhHHHHhhhhhccccccccccccccccccc---cccchHHHhhccccEE
Confidence 57899999999999777 999999998877 7888888875 4678888876654311111 1134666677899999
Q ss_pred EEcCCchhhhHHHHhCCCe
Q 024886 221 HIGDDEKADKQGANSLGID 239 (261)
Q Consensus 221 ~iGD~~~~Di~~a~~~G~~ 239 (261)
+|.|+ +.-...-...++.
T Consensus 111 ivDD~-~~~~~~~~~N~i~ 128 (159)
T PF03031_consen 111 IVDDS-PRKWALQPDNGIP 128 (159)
T ss_dssp EEES--GGGGTTSGGGEEE
T ss_pred EEeCC-HHHeeccCCceEE
Confidence 99776 4544333333433
No 160
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=98.09 E-value=1.6e-05 Score=73.77 Aligned_cols=88 Identities=19% Similarity=0.218 Sum_probs=66.6
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEE
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHI 222 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~i 222 (261)
+++||+.+.++.|++.|++++++|+.... ...+.+.+|+..++ +..+..| +. ++++++ .+..++||
T Consensus 568 ~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~~lgi~~~~------~~~p~~K--~~----~v~~l~-~~~~v~mv 634 (741)
T PRK11033 568 TLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGELGIDFRA------GLLPEDK--VK----AVTELN-QHAPLAMV 634 (741)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCeec------CCCHHHH--HH----HHHHHh-cCCCEEEE
Confidence 56899999999999999999999998777 79999999985322 1122223 22 344444 23689999
Q ss_pred cCCchhhhHHHHhCCCeEEEECCC
Q 024886 223 GDDEKADKQGANSLGIDCWLWGID 246 (261)
Q Consensus 223 GD~~~~Di~~a~~~G~~~i~v~~~ 246 (261)
||. .||..+++.++++. .++++
T Consensus 635 GDg-iNDapAl~~A~vgi-a~g~~ 656 (741)
T PRK11033 635 GDG-INDAPAMKAASIGI-AMGSG 656 (741)
T ss_pred ECC-HHhHHHHHhCCeeE-EecCC
Confidence 999 89999999999665 55665
No 161
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=98.07 E-value=3e-05 Score=65.63 Aligned_cols=100 Identities=23% Similarity=0.233 Sum_probs=86.5
Q ss_pred eeeCccH--HHHHHHHHHCCCeEEEEeCCc--hH-HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCC
Q 024886 143 WHLPHGA--YQSILLLKDAGVKVAVVSNFD--TR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEAS 217 (261)
Q Consensus 143 ~~~~~g~--~~~l~~L~~~g~~i~i~T~~~--~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~ 217 (261)
..++|.. .++.+.+.++|.++.++|... .. ++.+|...|.+-.--.++.|.+....|.+...|..+++.-++++.
T Consensus 96 evLypn~~~~eL~e~ai~n~krVIlISDMYlps~Il~~~L~s~g~d~~nipiY~S~e~rl~KnSg~LFk~Vlk~EnVd~~ 175 (635)
T COG5610 96 EVLYPNKKNIELVEEAIKNEKRVILISDMYLPSSILRTFLNSFGPDFNNIPIYMSSEFRLKKNSGNLFKAVLKLENVDPK 175 (635)
T ss_pred eEeeccccchHHHHHHHhCCCeEEEEecccCcHHHHHHHHHhcCCCccCceeeecceeehhcccchHHHHHHhhcCCChh
Confidence 4566654 578899999999999999854 44 699999999765555688888888999999999999999999999
Q ss_pred cEEEEcCCchhhhHHHHhCCCeEEE
Q 024886 218 RTVHIGDDEKADKQGANSLGIDCWL 242 (261)
Q Consensus 218 ~~l~iGD~~~~Di~~a~~~G~~~i~ 242 (261)
.++++||+...|..++++.|+.+.+
T Consensus 176 ~w~H~GDN~~aD~l~pk~LgI~Tlf 200 (635)
T COG5610 176 KWIHCGDNWVADYLKPKNLGISTLF 200 (635)
T ss_pred heEEecCchhhhhcCccccchhHHH
Confidence 9999999999999999999998853
No 162
>PLN02645 phosphoglycolate phosphatase
Probab=98.01 E-value=5.4e-05 Score=63.16 Aligned_cols=88 Identities=18% Similarity=0.201 Sum_probs=66.7
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH----HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcE
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR----LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRT 219 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~----~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~ 219 (261)
.++||+.++|+.|+++|++++++||++.. ....++.+|+...++.++++.. .....++..+....+.
T Consensus 44 ~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~~~I~ts~~---------~~~~~l~~~~~~~~~~ 114 (311)
T PLN02645 44 KLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTEEEIFSSSF---------AAAAYLKSINFPKDKK 114 (311)
T ss_pred ccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCChhhEeehHH---------HHHHHHHhhccCCCCE
Confidence 67899999999999999999999997732 3455678898777777776543 4445555555544445
Q ss_pred EEEcCCchhhhHHHHhCCCeEE
Q 024886 220 VHIGDDEKADKQGANSLGIDCW 241 (261)
Q Consensus 220 l~iGD~~~~Di~~a~~~G~~~i 241 (261)
++++++ ..+.+.++.+|+..+
T Consensus 115 V~viG~-~~~~~~l~~~Gi~~~ 135 (311)
T PLN02645 115 VYVIGE-EGILEELELAGFQYL 135 (311)
T ss_pred EEEEcC-HHHHHHHHHCCCEEe
Confidence 777777 789999999999764
No 163
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=97.97 E-value=0.00036 Score=56.22 Aligned_cols=100 Identities=19% Similarity=0.301 Sum_probs=69.2
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchHH----HHHHHhcCcc--cc-c--ceEE----e-c---------CC--CCCC
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTRL----RKLLKDLNVI--DL-F--DAVV----I-S---------SE--VGCE 198 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~~----~~~l~~~gl~--~~-f--~~i~----~-~---------~~--~~~~ 198 (261)
..-+.+.++++.|.+.|+++..+|...... ...|+.+|++ .. | +.++ . . ++ ...+
T Consensus 81 lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~~ 160 (252)
T PF11019_consen 81 LIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFTGG 160 (252)
T ss_pred EcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEeCC
Confidence 445788899999999999999999977552 4556677764 10 0 0111 0 0 00 1134
Q ss_pred CCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHh----CCCeEEEEC
Q 024886 199 KPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANS----LGIDCWLWG 244 (261)
Q Consensus 199 Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~----~G~~~i~v~ 244 (261)
-++..++..++...|..|+.++||.|+ ..++....+ .|+..+++-
T Consensus 161 ~~KG~~L~~fL~~~~~~pk~IIfIDD~-~~nl~sv~~a~k~~~I~f~G~~ 209 (252)
T PF11019_consen 161 QDKGEVLKYFLDKINQSPKKIIFIDDN-KENLKSVEKACKKSGIDFIGFH 209 (252)
T ss_pred CccHHHHHHHHHHcCCCCCeEEEEeCC-HHHHHHHHHHHhhCCCcEEEEE
Confidence 567789999999999999999999887 788865543 477665443
No 164
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=97.95 E-value=0.00011 Score=58.90 Aligned_cols=79 Identities=25% Similarity=0.363 Sum_probs=59.1
Q ss_pred CccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCC------------------------------
Q 024886 146 PHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSE------------------------------ 194 (261)
Q Consensus 146 ~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~------------------------------ 194 (261)
.|.+.+.|.+|++.|..+++.|-+.++ +...++.+++..+||.+++...
T Consensus 144 ~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~~~L~~~Fd~ii~~G~~~~~~~~~~~~d~~~~~~f~~~~FylDv~~ 223 (297)
T PF05152_consen 144 DPAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKELKLEGYFDIIICGGNKAGEYNSRVIVDRQYKVIFVSKPFYLDVTN 223 (297)
T ss_pred ChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHhCCccccEEEEeCCccCCcCCccceeecccceEEeccceEEeCCc
Confidence 466778899999999999999988877 7999999999999999988532
Q ss_pred -CCCCCCCHHHHHHHHHHcCCCCCcEEEEcCC
Q 024886 195 -VGCEKPDPRIFKAALDQMSVEASRTVHIGDD 225 (261)
Q Consensus 195 -~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~ 225 (261)
.+.+| +|......+++.|+..-..+-.-|+
T Consensus 224 ~~~LPK-SPrVVL~yL~k~gvny~KtiTLVDD 254 (297)
T PF05152_consen 224 VNNLPK-SPRVVLWYLRKKGVNYFKTITLVDD 254 (297)
T ss_pred CCCCCC-CCeehHHHHHHcCCceeeeEEEecc
Confidence 01222 4557778888888875444433355
No 165
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=97.92 E-value=0.00011 Score=52.42 Aligned_cols=47 Identities=17% Similarity=0.251 Sum_probs=34.7
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH----------------HHHHHHhcCcccccceEEec
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR----------------LRKLLKDLNVIDLFDAVVIS 192 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~----------------~~~~l~~~gl~~~f~~i~~~ 192 (261)
.+.+++.+.++.++++|+.++++|+.+.. ...+|++.++. +|.++..
T Consensus 24 ~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ip--Yd~l~~~ 86 (126)
T TIGR01689 24 APILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVP--YDEIYVG 86 (126)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCC--CceEEeC
Confidence 45667888899999999999999987632 25667777775 5666543
No 166
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=97.91 E-value=6e-05 Score=56.14 Aligned_cols=77 Identities=18% Similarity=0.148 Sum_probs=58.7
Q ss_pred eeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcc-ccc-ceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcE
Q 024886 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVI-DLF-DAVVISSEVGCEKPDPRIFKAALDQMSVEASRT 219 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~-~~f-~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~ 219 (261)
..++||+.++|+.|++. ++++|+|++.+. +..+++.++.. .+| +.+++.++.. .+. .+-+-.-++.+.+.+
T Consensus 57 v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl~~ldp~~~~F~~ri~~rd~~~--~~~---~KdL~~i~~~d~~~v 130 (156)
T TIGR02250 57 TKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIAKLIDPDGKYFGDRIISRDESG--SPH---TKSLLRLFPADESMV 130 (156)
T ss_pred EEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHHHHhCcCCCeeccEEEEeccCC--CCc---cccHHHHcCCCcccE
Confidence 57899999999999966 999999999988 79999999987 478 6677666533 111 112224457889999
Q ss_pred EEEcCC
Q 024886 220 VHIGDD 225 (261)
Q Consensus 220 l~iGD~ 225 (261)
++|.|+
T Consensus 131 vivDd~ 136 (156)
T TIGR02250 131 VIIDDR 136 (156)
T ss_pred EEEeCC
Confidence 999665
No 167
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=97.91 E-value=3.6e-05 Score=70.05 Aligned_cols=96 Identities=14% Similarity=0.172 Sum_probs=70.2
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEE
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHI 222 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~i 222 (261)
++.||+.+.++.|++.|+++.++|+.... ...+.+.+|+++++. + ..| +--..+++.+.-....+.|+
T Consensus 446 ~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~lGI~~v~a-----~----~~P--edK~~~v~~lq~~g~~Vamv 514 (675)
T TIGR01497 446 IVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAGVDDFIA-----E----ATP--EDKIALIRQEQAEGKLVAMT 514 (675)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCEEEc-----C----CCH--HHHHHHHHHHHHcCCeEEEE
Confidence 46799999999999999999999997777 799999999864332 1 122 23333333333334579999
Q ss_pred cCCchhhhHHHHhCCCeEEEECCCCCChHH
Q 024886 223 GDDEKADKQGANSLGIDCWLWGIDVKTFSD 252 (261)
Q Consensus 223 GD~~~~Di~~a~~~G~~~i~v~~~~~~~~e 252 (261)
||. .||..+.+.++++. .++++.+-..+
T Consensus 515 GDG-~NDapAL~~AdvGi-Am~~gt~~ake 542 (675)
T TIGR01497 515 GDG-TNDAPALAQADVGV-AMNSGTQAAKE 542 (675)
T ss_pred CCC-cchHHHHHhCCEeE-EeCCCCHHHHH
Confidence 999 89999999999876 56666443333
No 168
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=97.88 E-value=2.7e-05 Score=74.05 Aligned_cols=103 Identities=12% Similarity=0.137 Sum_probs=73.0
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCccccc----ceEEecCC----------------CCCCCCCH
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLF----DAVVISSE----------------VGCEKPDP 202 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f----~~i~~~~~----------------~~~~Kp~~ 202 (261)
++.|++.+.++.|++.|++++++|+.... ...+.+..|+...- +..+...+ .-.+...|
T Consensus 537 plr~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia~~~gi~~~~~~v~~~~~~g~~l~~~~~~~~~~~~~~~~v~ar~~P 616 (917)
T TIGR01116 537 PPRPEVADAIEKCRTAGIRVIMITGDNKETAEAICRRIGIFSPDEDVTFKSFTGREFDEMGPAKQRAACRSAVLFSRVEP 616 (917)
T ss_pred CCchhHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHcCCCCCCccccceeeeHHHHhhCCHHHHHHhhhcCeEEEecCH
Confidence 46899999999999999999999997766 78899999975311 11111110 01122233
Q ss_pred HHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCC
Q 024886 203 RIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVK 248 (261)
Q Consensus 203 ~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~ 248 (261)
+--..+++.++-..+.+.++||+ .||+.+.+.|+++. .++++.+
T Consensus 617 ~~K~~iV~~lq~~g~~va~iGDG-~ND~~alk~AdVGi-a~g~g~~ 660 (917)
T TIGR01116 617 SHKSELVELLQEQGEIVAMTGDG-VNDAPALKKADIGI-AMGSGTE 660 (917)
T ss_pred HHHHHHHHHHHhcCCeEEEecCC-cchHHHHHhCCeeE-ECCCCcH
Confidence 34466666666667888999999 89999999999865 6666633
No 169
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=97.80 E-value=8e-05 Score=67.90 Aligned_cols=101 Identities=11% Similarity=0.137 Sum_probs=76.3
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEE
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHI 222 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~i 222 (261)
++.|++.+.+++|++.|+++.++|+.... ...+-+.+|+.++|.. . .|+--..+.+.++-..+-+.|+
T Consensus 441 p~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~~v~A~---------~--~PedK~~iV~~lQ~~G~~VaMt 509 (673)
T PRK14010 441 VIKDGLVERFRELREMGIETVMCTGDNELTAATIAKEAGVDRFVAE---------C--KPEDKINVIREEQAKGHIVAMT 509 (673)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCceEEcC---------C--CHHHHHHHHHHHHhCCCEEEEE
Confidence 46899999999999999999999997777 7999999999653321 1 3344555556665555779999
Q ss_pred cCCchhhhHHHHhCCCeEEEECCCCCChHHHHHhh
Q 024886 223 GDDEKADKQGANSLGIDCWLWGIDVKTFSDVQNRI 257 (261)
Q Consensus 223 GD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~~l 257 (261)
||. .||..+.+.|.++. .++++.+-.+|..+++
T Consensus 510 GDG-vNDAPALa~ADVGI-AMgsGTdvAkeAADiV 542 (673)
T PRK14010 510 GDG-TNDAPALAEANVGL-AMNSGTMSAKEAANLI 542 (673)
T ss_pred CCC-hhhHHHHHhCCEEE-EeCCCCHHHHHhCCEE
Confidence 998 89999999998765 6777755555544443
No 170
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=97.76 E-value=0.00035 Score=51.57 Aligned_cols=91 Identities=23% Similarity=0.246 Sum_probs=56.6
Q ss_pred eCccHHHHHHHHHHCCCeEEEEeCCchH----HHHHHHhc-----CcccccceEEecC---------CCCCCCCCHHHHH
Q 024886 145 LPHGAYQSILLLKDAGVKVAVVSNFDTR----LRKLLKDL-----NVIDLFDAVVISS---------EVGCEKPDPRIFK 206 (261)
Q Consensus 145 ~~~g~~~~l~~L~~~g~~i~i~T~~~~~----~~~~l~~~-----gl~~~f~~i~~~~---------~~~~~Kp~~~~~~ 206 (261)
..+|+.++.+.+.++||++..+|+.+.. .+.+|... ++.+ ..+..+. ++-.. +|+.|+
T Consensus 28 ~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~q~~~~lP~--Gpv~~sP~~l~~al~rEvi~~--~p~~fK 103 (157)
T PF08235_consen 28 THPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQHQQQGHNLPD--GPVLLSPDSLFSALHREVISK--DPEEFK 103 (157)
T ss_pred hhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHHHhCCccCCC--CCEEECCcchhhhhhcccccc--ChHHHH
Confidence 3478999999999999999999998743 26777766 3321 1222221 11122 333433
Q ss_pred -----HHHHHcC-CCCCcEEEEcCCchhhhHHHHhCCCeE
Q 024886 207 -----AALDQMS-VEASRTVHIGDDEKADKQGANSLGIDC 240 (261)
Q Consensus 207 -----~~~~~l~-~~~~~~l~iGD~~~~Di~~a~~~G~~~ 240 (261)
.+...+. ....=...+|.. .+|+.+=+++|+..
T Consensus 104 ~~~L~~l~~~f~~~~~pf~agfGN~-~tDv~aY~~vGip~ 142 (157)
T PF08235_consen 104 IACLRDLRALFPPDGNPFYAGFGNR-STDVIAYKAVGIPK 142 (157)
T ss_pred HHHHHHHHHhcCCCCCeEEEecCCc-HHHHHHHHHcCCCh
Confidence 3333333 122224458887 89999999999964
No 171
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=97.72 E-value=0.00012 Score=66.77 Aligned_cols=101 Identities=14% Similarity=0.181 Sum_probs=75.0
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEE
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHI 222 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~i 222 (261)
++.||+.+.++.|++.|+++.++|+.... ...+-+.+|++++|.. . .|+--..+.+.++-..+-+.|+
T Consensus 445 ~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId~v~A~---------~--~PedK~~iV~~lQ~~G~~VaMt 513 (679)
T PRK01122 445 IVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFLAE---------A--TPEDKLALIRQEQAEGRLVAMT 513 (679)
T ss_pred cCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCcEEEcc---------C--CHHHHHHHHHHHHHcCCeEEEE
Confidence 35799999999999999999999997777 7999999999653321 1 3334445555555445679999
Q ss_pred cCCchhhhHHHHhCCCeEEEECCCCCChHHHHHhh
Q 024886 223 GDDEKADKQGANSLGIDCWLWGIDVKTFSDVQNRI 257 (261)
Q Consensus 223 GD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~~l 257 (261)
||. .||..+.+.|.++. .++++.+-.+|..+++
T Consensus 514 GDG-vNDAPALa~ADVGI-AMgsGTdvAkeAADiV 546 (679)
T PRK01122 514 GDG-TNDAPALAQADVGV-AMNSGTQAAKEAGNMV 546 (679)
T ss_pred CCC-cchHHHHHhCCEeE-EeCCCCHHHHHhCCEE
Confidence 998 89999999998776 6767755444444433
No 172
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=97.70 E-value=0.00064 Score=52.37 Aligned_cols=91 Identities=10% Similarity=0.110 Sum_probs=57.1
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccc--cceEEecCC----------CC--CCCCCHHHHHHH
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDL--FDAVVISSE----------VG--CEKPDPRIFKAA 208 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~--f~~i~~~~~----------~~--~~Kp~~~~~~~~ 208 (261)
...|++.++|+.+.+. |.|+|.|++... +..++..+++... +...+.-+. .+ ..|+ +..+
T Consensus 45 ~kRP~l~eFL~~~~~~-feIvVwTAa~~~ya~~~l~~l~~~~~~~~~i~~~ld~~~~~~~~~~~~g~~~vKd----L~~l 119 (195)
T TIGR02245 45 LMRPYLHEFLTSAYED-YDIVIWSATSMKWIEIKMTELGVLTNPNYKITFLLDSTAMITVHTPRRGKFDVKP----LGVI 119 (195)
T ss_pred EeCCCHHHHHHHHHhC-CEEEEEecCCHHHHHHHHHHhcccCCccceEEEEeccccceeeEeeccCcEEEee----cHHh
Confidence 5679999999999986 999999998876 8888888765321 111111111 11 1233 3344
Q ss_pred HHHcC--CCCCcEEEEcCCchhhhHHHHhCCCeE
Q 024886 209 LDQMS--VEASRTVHIGDDEKADKQGANSLGIDC 240 (261)
Q Consensus 209 ~~~l~--~~~~~~l~iGD~~~~Di~~a~~~G~~~ 240 (261)
.+.+| .+.+++++|.|+ +....+=-..|+..
T Consensus 120 w~~l~~~~~~~ntiiVDd~-p~~~~~~P~N~i~I 152 (195)
T TIGR02245 120 WALLPEFYSMKNTIMFDDL-RRNFLMNPQNGLKI 152 (195)
T ss_pred hhhcccCCCcccEEEEeCC-HHHHhcCCCCcccc
Confidence 44554 378999999776 45544443445544
No 173
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.64 E-value=0.00017 Score=66.00 Aligned_cols=98 Identities=17% Similarity=0.267 Sum_probs=72.2
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEE
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHI 222 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~i 222 (261)
++.|++.+.++.|++.|+++.++|+..+. .+.+-+.+|+++++... +| +--...++++.-....+.||
T Consensus 537 ~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~~lGId~v~Ael---------lP--edK~~~V~~l~~~g~~VamV 605 (713)
T COG2217 537 ELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKELGIDEVRAEL---------LP--EDKAEIVRELQAEGRKVAMV 605 (713)
T ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcChHhheccC---------Cc--HHHHHHHHHHHhcCCEEEEE
Confidence 46889999999999999999999997777 79999999997655444 22 12333444444444779999
Q ss_pred cCCchhhhHHHHhCCCeEEEECCCCCChHHHH
Q 024886 223 GDDEKADKQGANSLGIDCWLWGIDVKTFSDVQ 254 (261)
Q Consensus 223 GD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~ 254 (261)
||. .||..+...+-++. .++.|.+-..|-+
T Consensus 606 GDG-INDAPALA~AdVGi-AmG~GtDvA~eaA 635 (713)
T COG2217 606 GDG-INDAPALAAADVGI-AMGSGTDVAIEAA 635 (713)
T ss_pred eCC-chhHHHHhhcCeeE-eecCCcHHHHHhC
Confidence 998 89998888887665 6666644333333
No 174
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=97.56 E-value=0.00042 Score=54.23 Aligned_cols=81 Identities=15% Similarity=0.088 Sum_probs=57.4
Q ss_pred EEEEeCCc-hHHHHHHHhcCccccc--ceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCe
Q 024886 163 VAVVSNFD-TRLRKLLKDLNVIDLF--DAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGID 239 (261)
Q Consensus 163 i~i~T~~~-~~~~~~l~~~gl~~~f--~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~ 239 (261)
=++||++. ...-...--+|++.+| +.|+++..+ + +...|+.+.+++|-+....++|||. ...-++|+..+|+
T Consensus 178 NvLVTs~qLVPaLaKcLLy~L~~~f~ieNIYSa~kv--G--K~~cFe~I~~Rfg~p~~~f~~IGDG-~eEe~aAk~l~wP 252 (274)
T TIGR01658 178 NVLVTSGQLIPSLAKCLLFRLDTIFRIENVYSSIKV--G--KLQCFKWIKERFGHPKVRFCAIGDG-WEECTAAQAMNWP 252 (274)
T ss_pred EEEEEcCccHHHHHHHHHhccCCccccccccchhhc--c--hHHHHHHHHHHhCCCCceEEEeCCC-hhHHHHHHhcCCC
Confidence 34455443 3322222234455555 688877664 3 4559999999999988899999998 6888999999999
Q ss_pred EEEECCCCC
Q 024886 240 CWLWGIDVK 248 (261)
Q Consensus 240 ~i~v~~~~~ 248 (261)
++-++...+
T Consensus 253 Fw~I~~h~D 261 (274)
T TIGR01658 253 FVKIDLHPD 261 (274)
T ss_pred eEEeecCCC
Confidence 998877654
No 175
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=97.55 E-value=0.00029 Score=57.81 Aligned_cols=98 Identities=21% Similarity=0.214 Sum_probs=68.1
Q ss_pred CccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhc---CcccccceEEecCCCC-----CCCCCH--------------
Q 024886 146 PHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDL---NVIDLFDAVVISSEVG-----CEKPDP-------------- 202 (261)
Q Consensus 146 ~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~---gl~~~f~~i~~~~~~~-----~~Kp~~-------------- 202 (261)
-|....+|+.|+++|.+++++||++.. +..=++.+ .+-+.||.++.--.-+ ..+|-.
T Consensus 242 ~~ql~~fl~kL~~~GKklFLiTNSPysFVd~GM~flvG~~WRdlFDVVIvqA~KP~Fftde~rPfR~~dek~~sl~wdkv 321 (510)
T KOG2470|consen 242 NPQLLAFLRKLKDHGKKLFLITNSPYSFVDKGMRFLVGDDWRDLFDVVIVQANKPEFFTDERRPFRKYDEKRGSLLWDKV 321 (510)
T ss_pred cHHHHHHHHHHHHhcCcEEEEeCCchhhhhcCceeeeCccHHhhhheeEEecCCCcccccccCcchhhcccccchhhhhh
Confidence 356778999999999999999999977 55444432 4667788777532100 011100
Q ss_pred -----------HHHHHHHHHcCCCCCcEEEEcCCchhhhHHHH-hCCCeEEEE
Q 024886 203 -----------RIFKAALDQMSVEASRTVHIGDDEKADKQGAN-SLGIDCWLW 243 (261)
Q Consensus 203 -----------~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~-~~G~~~i~v 243 (261)
..+...++.-|....+++++||.+.+|+.... +.||.+-++
T Consensus 322 ~klekgkiYy~G~l~~flelt~WrG~~VlYFGDHlySDLad~tlkhgWRTgAI 374 (510)
T KOG2470|consen 322 DKLEKGKIYYQGNLKSFLELTGWRGPRVLYFGDHLYSDLADLTLKHGWRTGAI 374 (510)
T ss_pred hhcccCceeeeccHHHHHHHhccCCCeeEEecCcchhhhhhhHhhcccccccc
Confidence 01345555668888999999999999998887 899987443
No 176
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=97.43 E-value=0.00056 Score=64.86 Aligned_cols=110 Identities=9% Similarity=0.156 Sum_probs=76.1
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCC----------------CCCCCHHHHH
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVG----------------CEKPDPRIFK 206 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~----------------~~Kp~~~~~~ 206 (261)
++.|++.+.++.|++.|+++.++|+.... ...+-+.+|+.. +.++...+.. ...-.|+--.
T Consensus 515 p~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA~aIA~~lGI~~--~~v~~g~~l~~~~~~el~~~~~~~~vfAr~~Pe~K~ 592 (867)
T TIGR01524 515 PPKESTKEAIAALFKNGINVKVLTGDNEIVTARICQEVGIDA--NDFLLGADIEELSDEELARELRKYHIFARLTPMQKS 592 (867)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCC--CCeeecHhhhhCCHHHHHHHhhhCeEEEECCHHHHH
Confidence 45789999999999999999999997776 789999999852 1222221110 1112333344
Q ss_pred HHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCChHHHHHhh
Q 024886 207 AALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFSDVQNRI 257 (261)
Q Consensus 207 ~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~~l 257 (261)
.+.+.+.-..+.+.|+||. .||..+.+.|.++. .++++.+-.++..+++
T Consensus 593 ~iV~~lq~~G~vVam~GDG-vNDapALk~AdVGI-Amg~gtdvAk~aADiV 641 (867)
T TIGR01524 593 RIIGLLKKAGHTVGFLGDG-INDAPALRKADVGI-SVDTAADIAKEASDII 641 (867)
T ss_pred HHHHHHHhCCCEEEEECCC-cccHHHHHhCCEEE-EeCCccHHHHHhCCEE
Confidence 4455554445679999998 89999999999876 5667755555555544
No 177
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=97.41 E-value=0.0024 Score=52.00 Aligned_cols=54 Identities=24% Similarity=0.287 Sum_probs=41.6
Q ss_pred CCCCCCHHHHHHHHHHc--------C-CCCCcEEEEcCCchhhhHHHH---------------hCCCeEEEECCCCCC
Q 024886 196 GCEKPDPRIFKAALDQM--------S-VEASRTVHIGDDEKADKQGAN---------------SLGIDCWLWGIDVKT 249 (261)
Q Consensus 196 ~~~Kp~~~~~~~~~~~l--------~-~~~~~~l~iGD~~~~Di~~a~---------------~~G~~~i~v~~~~~~ 249 (261)
..+||.+-.|.++...+ + -++....+|||++..|+..|. +-||.+|+|-+|+.+
T Consensus 268 t~GKPt~ltY~~A~~vl~~~ak~~~~~~~~k~lymvGDNP~sDv~GA~lf~~yap~~~~g~~~~~~w~SILV~TGV~~ 345 (389)
T KOG1618|consen 268 TLGKPTKLTYDYAEDVLRRQAKRRGGAAPIKKLYMVGDNPMSDVRGANLFHQYAPELGAGGSANYGWISILVRTGVYN 345 (389)
T ss_pred ccCCCceehHHhHHHHHHHHHHhhcccCCcceeeeecCCCcccccccccccccccccccccccCCCceEEEEeeeeec
Confidence 46899887776655443 2 256788999999999999996 779999998777544
No 178
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=97.38 E-value=0.00035 Score=65.23 Aligned_cols=108 Identities=11% Similarity=0.081 Sum_probs=76.0
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCC----------------------CCCCC
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEV----------------------GCEKP 200 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~----------------------~~~Kp 200 (261)
++.|++.+.++.|++.|+++.++|+.... ...+-+..|+.+. ++..+++ -...-
T Consensus 442 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vfAr~ 518 (755)
T TIGR01647 442 PPRHDTKETIERARHLGVEVKMVTGDHLAIAKETARRLGLGTN---IYTADVLLKGDNRDDLPSGELGEMVEDADGFAEV 518 (755)
T ss_pred CChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCC---CcCHHHhcCCcchhhCCHHHHHHHHHhCCEEEec
Confidence 56789999999999999999999998777 7899999998631 1111111 11222
Q ss_pred CHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCChHHHHHh
Q 024886 201 DPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFSDVQNR 256 (261)
Q Consensus 201 ~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~~ 256 (261)
.|+--..+.+.+.-..+-+.|+||. .||..+.+.|.++. .++++.+-.++.+++
T Consensus 519 ~Pe~K~~iV~~lq~~G~~VamvGDG-vNDapAL~~AdVGI-Am~~gtdvAkeaADi 572 (755)
T TIGR01647 519 FPEHKYEIVEILQKRGHLVGMTGDG-VNDAPALKKADVGI-AVAGATDAARSAADI 572 (755)
T ss_pred CHHHHHHHHHHHHhcCCEEEEEcCC-cccHHHHHhCCeeE-EecCCcHHHHHhCCE
Confidence 3444455556565556789999998 89999999998875 566665444444443
No 179
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=97.35 E-value=0.00079 Score=64.07 Aligned_cols=110 Identities=15% Similarity=0.189 Sum_probs=77.9
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCC----------------CCCCCHHHHH
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVG----------------CEKPDPRIFK 206 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~----------------~~Kp~~~~~~ 206 (261)
++.|++.+.++.|++.|+++.++|+.... ...+-+.+|+.. +.++...+.. ...-.|+--.
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~aIA~~lGI~~--~~vi~G~el~~~~~~el~~~v~~~~VfAr~sPe~K~ 627 (903)
T PRK15122 550 PPKESAAPAIAALRENGVAVKVLTGDNPIVTAKICREVGLEP--GEPLLGTEIEAMDDAALAREVEERTVFAKLTPLQKS 627 (903)
T ss_pred ccHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCC--CCccchHhhhhCCHHHHHHHhhhCCEEEEeCHHHHH
Confidence 46789999999999999999999997776 789999999852 2222221111 1222344445
Q ss_pred HHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCChHHHHHhh
Q 024886 207 AALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFSDVQNRI 257 (261)
Q Consensus 207 ~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~~l 257 (261)
.+.+.+.-..+-+.|+||. .||..+.+.|.++. .++++.+-.++.++++
T Consensus 628 ~iV~~Lq~~G~vVamtGDG-vNDaPALk~ADVGI-Amg~gtdvAkeaADiV 676 (903)
T PRK15122 628 RVLKALQANGHTVGFLGDG-INDAPALRDADVGI-SVDSGADIAKESADII 676 (903)
T ss_pred HHHHHHHhCCCEEEEECCC-chhHHHHHhCCEEE-EeCcccHHHHHhcCEE
Confidence 5555555556779999998 89999999998875 6777755555555554
No 180
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=97.33 E-value=0.00081 Score=63.93 Aligned_cols=110 Identities=15% Similarity=0.162 Sum_probs=77.5
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCC----------------CCCCCHHHHH
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVG----------------CEKPDPRIFK 206 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~----------------~~Kp~~~~~~ 206 (261)
++.|++.+.++.|++.|+++.++|+.... ...+-+.+|+.. +.++.+.+.. ...-.|+--.
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~--~~v~~G~el~~l~~~el~~~~~~~~VfAr~sPe~K~ 627 (902)
T PRK10517 550 PPKETTAPALKALKASGVTVKILTGDSELVAAKVCHEVGLDA--GEVLIGSDIETLSDDELANLAERTTLFARLTPMHKE 627 (902)
T ss_pred cchhhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCc--cCceeHHHHHhCCHHHHHHHHhhCcEEEEcCHHHHH
Confidence 46789999999999999999999997777 788999999852 2233222111 1222344445
Q ss_pred HHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCChHHHHHhh
Q 024886 207 AALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFSDVQNRI 257 (261)
Q Consensus 207 ~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~~l 257 (261)
.+.+.+.-..+-+.|+||. .||..+.+.|.++. .++++.+-.++..+++
T Consensus 628 ~IV~~Lq~~G~vVam~GDG-vNDaPALk~ADVGI-Amg~gtdvAkeaADiV 676 (902)
T PRK10517 628 RIVTLLKREGHVVGFMGDG-INDAPALRAADIGI-SVDGAVDIAREAADII 676 (902)
T ss_pred HHHHHHHHCCCEEEEECCC-cchHHHHHhCCEEE-EeCCcCHHHHHhCCEE
Confidence 5555555555779999998 89999999998776 5667755455555444
No 181
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=97.32 E-value=0.00089 Score=55.85 Aligned_cols=96 Identities=16% Similarity=0.260 Sum_probs=66.2
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCch-------------HHHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHH
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDT-------------RLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALD 210 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~-------------~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~ 210 (261)
.++|.+..=|..|.+.|+.+++.||... .++.+...+++. |............||...+++.+.+
T Consensus 104 ~l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~~~~~~f~~Ki~~i~anl~vP--i~~~~A~~~~~yRKP~tGMwe~~~~ 181 (422)
T KOG2134|consen 104 ILFPEVPSKLKTLYQDGIKLFIFTNQNGIARGKLELEEFKKKIKAIVANLGVP--IQLLAAIIKGKYRKPSTGMWEFLKR 181 (422)
T ss_pred eeccccchhhhhhccCCeEEEEEecccccccCcchHHHHHHHHHHHHHhcCCc--eEEeeeccCCcccCcchhHHHHHHH
Confidence 5667777888889999999999998421 124445555553 4444444445688999999999998
Q ss_pred HcC----CCCCcEEEEcC--------------CchhhhHHHHhCCCeEE
Q 024886 211 QMS----VEASRTVHIGD--------------DEKADKQGANSLGIDCW 241 (261)
Q Consensus 211 ~l~----~~~~~~l~iGD--------------~~~~Di~~a~~~G~~~i 241 (261)
.++ +.-....|+|| ....|+..|.++|+...
T Consensus 182 ~~nd~~~Isek~s~fvgdaagr~~~~~~~kkd~S~~D~~FAaN~gvkF~ 230 (422)
T KOG2134|consen 182 LENDSVEISEKASIFVGDAAGRPLDALRRKKDHSSADRKFAANAGVKFK 230 (422)
T ss_pred HhhccceeeechhhhhhhhccCccccccCcccccHHHHHHHHhcCCccC
Confidence 874 33444457765 22568888999888763
No 182
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=97.26 E-value=0.0033 Score=58.72 Aligned_cols=58 Identities=17% Similarity=0.158 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCC--CeEEEECCC-------CCChHHHHHhh
Q 024886 197 CEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLG--IDCWLWGID-------VKTFSDVQNRI 257 (261)
Q Consensus 197 ~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G--~~~i~v~~~-------~~~~~el~~~l 257 (261)
.+-.|..+.+.+++ +++++.++++||+ .||+.|.+.++ ..++.+++. ..+.+++.+.|
T Consensus 654 ~~vnKG~al~~ll~--~~~~d~vl~~GD~-~nDe~Mf~~~~~~~~~v~vG~~~s~A~~~l~~~~eV~~~L 720 (726)
T PRK14501 654 AGVNKGRAVRRLLE--AGPYDFVLAIGDD-TTDEDMFRALPETAITVKVGPGESRARYRLPSQREVRELL 720 (726)
T ss_pred CCCCHHHHHHHHHh--cCCCCEEEEECCC-CChHHHHHhcccCceEEEECCCCCcceEeCCCHHHHHHHH
Confidence 44557778899888 7788999999999 79999999873 245667665 33455555544
No 183
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=97.26 E-value=0.00077 Score=64.59 Aligned_cols=103 Identities=12% Similarity=0.145 Sum_probs=70.4
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCC----------------CCCCCHHHHH
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVG----------------CEKPDPRIFK 206 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~----------------~~Kp~~~~~~ 206 (261)
++.|++.++++.|++.|+++.++|+.... ...+-+..|+...-..++...+.. ...-.|+--.
T Consensus 579 plr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~iA~~~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~~Vfar~sPe~K~ 658 (941)
T TIGR01517 579 PLRPGVREAVQECQRAGITVRMVTGDNIDTAKAIARNCGILTFGGLAMEGKEFRRLVYEEMDPILPKLRVLARSSPLDKQ 658 (941)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCCCCceEeeHHHhhhCCHHHHHHHhccCeEEEECCHHHHH
Confidence 46789999999999999999999997776 788999999853222222221110 1122333444
Q ss_pred HHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEEC-CCCC
Q 024886 207 AALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWG-IDVK 248 (261)
Q Consensus 207 ~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~-~~~~ 248 (261)
.+.+.+.-..+-+.|+||. .||..+.+.|.++. .++ ++.+
T Consensus 659 ~iV~~lq~~g~vVam~GDG-vNDapALk~AdVGI-Amg~~gtd 699 (941)
T TIGR01517 659 LLVLMLKDMGEVVAVTGDG-TNDAPALKLADVGF-SMGISGTE 699 (941)
T ss_pred HHHHHHHHCCCEEEEECCC-CchHHHHHhCCcce-ecCCCccH
Confidence 4555554445679999998 89999999998776 455 5533
No 184
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=97.24 E-value=0.00044 Score=53.97 Aligned_cols=46 Identities=13% Similarity=0.190 Sum_probs=41.6
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEE
Q 024886 195 VGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCW 241 (261)
Q Consensus 195 ~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i 241 (261)
.+.+.+++.+++.+++.++++++++++|||+ .+|+.+++.+|++.+
T Consensus 158 ~p~~~~K~~~~~~~~~~~~~~~~~~~~~GD~-~nD~~~~~~~~~~va 203 (204)
T TIGR01484 158 LPAGVDKGSALQALLKELNGKRDEILAFGDS-GNDEEMFEVAGLAVA 203 (204)
T ss_pred ecCCCChHHHHHHHHHHhCCCHHHEEEEcCC-HHHHHHHHHcCCceE
Confidence 4567888889999999999999999999999 899999999998763
No 185
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=97.24 E-value=0.0069 Score=49.76 Aligned_cols=86 Identities=20% Similarity=0.164 Sum_probs=58.7
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH----HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcE
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR----LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRT 219 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~----~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~ 219 (261)
.++||+.++|+.|+++|.+++++||++.. ....++.+|+....+.++++.. .....+++.+....++
T Consensus 18 ~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~~~i~ts~~---------~~~~~l~~~~~~~~~v 88 (279)
T TIGR01452 18 RVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGLAEQLFSSAL---------CAARLLRQPPDAPKAV 88 (279)
T ss_pred eeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEecHHH---------HHHHHHHhhCcCCCEE
Confidence 78899999999999999999999996522 3456788888655556654432 3334444433345678
Q ss_pred EEEcCCchhhhHHHHhCCCeE
Q 024886 220 VHIGDDEKADKQGANSLGIDC 240 (261)
Q Consensus 220 l~iGD~~~~Di~~a~~~G~~~ 240 (261)
+++|+. ...+..+..|+..
T Consensus 89 ~~iG~~--~~~~~l~~~g~~~ 107 (279)
T TIGR01452 89 YVIGEE--GLRAELDAAGIRL 107 (279)
T ss_pred EEEcCH--HHHHHHHHCCCEE
Confidence 889885 3445566667654
No 186
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=97.21 E-value=0.00036 Score=65.56 Aligned_cols=61 Identities=13% Similarity=0.147 Sum_probs=45.4
Q ss_pred CCCCCHHHHHHHHH---HcCCCCCcEEEEcCCchhhhHHHHhCC-------------CeEEEECCC-------CCChHHH
Q 024886 197 CEKPDPRIFKAALD---QMSVEASRTVHIGDDEKADKQGANSLG-------------IDCWLWGID-------VKTFSDV 253 (261)
Q Consensus 197 ~~Kp~~~~~~~~~~---~l~~~~~~~l~iGD~~~~Di~~a~~~G-------------~~~i~v~~~-------~~~~~el 253 (261)
.+-.|..+.+.+++ .+|++++.+++|||+ .+|..|.+.++ .-+|.|+.+ ..+..|+
T Consensus 759 ~gvnKG~Al~~Ll~~~~~~g~~~d~vl~~GDD-~nDedMF~~~~~~~~g~~~~~~~~~~~v~VG~~~S~A~y~L~d~~eV 837 (854)
T PLN02205 759 QGVSKGLVAKRLLSIMQERGMLPDFVLCIGDD-RSDEDMFEVITSSMAGPSIAPRAEVFACTVGQKPSKAKYYLDDTAEI 837 (854)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCcccEEEEcCC-ccHHHHHHHhhhhccCCcccccccceeEEECCCCccCeEecCCHHHH
Confidence 34556678888874 468999999999999 79999999876 234567655 4567777
Q ss_pred HHhhh
Q 024886 254 QNRIL 258 (261)
Q Consensus 254 ~~~l~ 258 (261)
.++|.
T Consensus 838 ~~lL~ 842 (854)
T PLN02205 838 VRLMQ 842 (854)
T ss_pred HHHHH
Confidence 76663
No 187
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=97.16 E-value=0.0013 Score=63.56 Aligned_cols=102 Identities=11% Similarity=0.136 Sum_probs=71.1
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCccccc----------ceEEecCCCC----------------
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLF----------DAVVISSEVG---------------- 196 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f----------~~i~~~~~~~---------------- 196 (261)
++.|++.++++.|++.|++++++|+.... ...+-+..|+.... +.++.+.+..
T Consensus 646 p~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA~~~Gi~~~~~~~~~~~~~~~~vitG~~l~~l~~~~l~~~~~~~~V 725 (1053)
T TIGR01523 646 PPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIAQEVGIIPPNFIHDRDEIMDSMVMTGSQFDALSDEEVDDLKALCLV 725 (1053)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCCccccccccccccceeeehHHhhhcCHHHHHHHhhcCeE
Confidence 56899999999999999999999998877 78999999985210 1222222111
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEEC-CCC
Q 024886 197 CEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWG-IDV 247 (261)
Q Consensus 197 ~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~-~~~ 247 (261)
...-.|+--..+++.+.-..+.+.++||. .||..+.+.|.++. .++ ++.
T Consensus 726 ~ar~sP~~K~~iV~~lq~~g~~Vam~GDG-vNDapaLk~AdVGI-Amg~~gt 775 (1053)
T TIGR01523 726 IARCAPQTKVKMIEALHRRKAFCAMTGDG-VNDSPSLKMANVGI-AMGINGS 775 (1053)
T ss_pred EEecCHHHHHHHHHHHHhcCCeeEEeCCC-cchHHHHHhCCccE-ecCCCcc
Confidence 12223334444555555445779999998 89999999998776 354 443
No 188
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=96.96 E-value=0.0022 Score=51.60 Aligned_cols=58 Identities=19% Similarity=0.113 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhC-------CCeEEEECCC---------CCChHHHHHhhh
Q 024886 200 PDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSL-------GIDCWLWGID---------VKTFSDVQNRIL 258 (261)
Q Consensus 200 p~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~-------G~~~i~v~~~---------~~~~~el~~~l~ 258 (261)
.|...++.+++++++++.++++|||+ .+|+.+++.+ |..++.|..+ ..+..++.++|.
T Consensus 167 ~Kg~a~~~~~~~~~~~~~~~i~iGD~-~~D~~~~~~~~~~~~~~g~~~v~v~~g~~~~~A~~~~~~~~~v~~~L~ 240 (244)
T TIGR00685 167 NKGEIVKRLLWHQPGSGISPVYLGDD-ITDEDAFRVVNNQWGNYGFYPVPIGSGSKKTVAKFHLTGPQQVLEFLG 240 (244)
T ss_pred CHHHHHHHHHHhcccCCCceEEEcCC-CcHHHHHHHHhcccCCCCeEEEEEecCCcCCCceEeCCCHHHHHHHHH
Confidence 34679999999999999999999999 8999999988 6677777333 456677666653
No 189
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.93 E-value=0.0081 Score=51.80 Aligned_cols=89 Identities=16% Similarity=0.149 Sum_probs=66.0
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCc-hHHHHHHHhcCcc----cccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCc
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFD-TRLRKLLKDLNVI----DLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASR 218 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~-~~~~~~l~~~gl~----~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~ 218 (261)
+++....+++..|+++|+-++|.|-+. .++++..++..-. +.|+.+- . ..-|+.+.+..+++++|+..+.
T Consensus 255 ~~fk~fQ~~Ik~l~kqGVlLav~SKN~~~da~evF~khp~MiLkeedfa~~~----i-NW~~K~eNirkIAkklNlg~dS 329 (574)
T COG3882 255 EAFKTFQNFIKGLKKQGVLLAVCSKNTEKDAKEVFRKHPDMILKEEDFAVFQ----I-NWDPKAENIRKIAKKLNLGLDS 329 (574)
T ss_pred hhHHHHHHHHHHHHhccEEEEEecCCchhhHHHHHhhCCCeEeeHhhhhhhe----e-cCCcchhhHHHHHHHhCCCccc
Confidence 344455677888999999999999655 4477777776411 1222221 1 3467888999999999999999
Q ss_pred EEEEcCCchhhhHHHHhCCC
Q 024886 219 TVHIGDDEKADKQGANSLGI 238 (261)
Q Consensus 219 ~l~iGD~~~~Di~~a~~~G~ 238 (261)
.+|+.|+ +...+-.++.+-
T Consensus 330 mvFiDD~-p~ErE~vk~~~~ 348 (574)
T COG3882 330 MVFIDDN-PAERELVKRELP 348 (574)
T ss_pred eEEecCC-HHHHHHHHhcCc
Confidence 9999887 788888888874
No 190
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=96.83 E-value=0.0079 Score=49.05 Aligned_cols=61 Identities=18% Similarity=0.199 Sum_probs=47.9
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhC---CCeEEEECCC-------CCChHHHHHhh
Q 024886 196 GCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSL---GIDCWLWGID-------VKTFSDVQNRI 257 (261)
Q Consensus 196 ~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~---G~~~i~v~~~-------~~~~~el~~~l 257 (261)
..+-.|..+++.+++.+|++.+++++|||+ .+|+.|.+.+ |-.++.|+++ ..+..++.++|
T Consensus 170 p~g~~Kg~al~~ll~~~~~~~~~v~~~GD~-~nD~~mf~~~~~~~g~~vavg~a~~~A~~~l~~~~~v~~~L 240 (266)
T PRK10187 170 PRGTNKGEAIAAFMQEAPFAGRTPVFVGDD-LTDEAGFAVVNRLGGISVKVGTGATQASWRLAGVPDVWSWL 240 (266)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCeEEEEcCC-ccHHHHHHHHHhcCCeEEEECCCCCcCeEeCCCHHHHHHHH
Confidence 345567789999999999999999999999 7999999988 3355678776 44566666555
No 191
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=96.82 E-value=0.009 Score=42.70 Aligned_cols=94 Identities=14% Similarity=0.105 Sum_probs=56.7
Q ss_pred eeeCccHHHHHHHHHHCCCeEEEEeCC---chHHHH----HHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCC
Q 024886 143 WHLPHGAYQSILLLKDAGVKVAVVSNF---DTRLRK----LLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVE 215 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g~~i~i~T~~---~~~~~~----~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~ 215 (261)
..+.|++++.+++|... |.+||+|.. +..... +.+.+.+-++-..++|..- +.-|.+
T Consensus 67 L~V~p~aq~v~keLt~~-y~vYivtaamdhp~s~~dK~eWl~E~FPFi~~qn~vfCgnK-nivkaD-------------- 130 (180)
T COG4502 67 LGVQPFAQTVLKELTSI-YNVYIVTAAMDHPKSCEDKGEWLKEKFPFISYQNIVFCGNK-NIVKAD-------------- 130 (180)
T ss_pred cCccccHHHHHHHHHhh-heEEEEEeccCCchhHHHHHHHHHHHCCCCChhhEEEecCC-CeEEee--------------
Confidence 47789999999999888 999999975 222322 2344555555566666442 222211
Q ss_pred CCcEEEEcCCchhhhHHHHhCCCeEEEECCC-------CCChHHHHHhh
Q 024886 216 ASRTVHIGDDEKADKQGANSLGIDCWLWGID-------VKTFSDVQNRI 257 (261)
Q Consensus 216 ~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~-------~~~~~el~~~l 257 (261)
++|.|+ +.+++......+-.-+.-+. +.+|.|+..++
T Consensus 131 ----ilIDDn-p~nLE~F~G~kIlFdA~HN~nenRF~Rv~~W~e~eq~l 174 (180)
T COG4502 131 ----ILIDDN-PLNLENFKGNKILFDAHHNKNENRFVRVRDWYEAEQAL 174 (180)
T ss_pred ----EEecCC-chhhhhccCceEEEecccccCccceeeeccHHHHHHHH
Confidence 678776 78887665433322122221 56788877655
No 192
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=96.82 E-value=0.0032 Score=49.06 Aligned_cols=34 Identities=32% Similarity=0.515 Sum_probs=23.4
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhc
Q 024886 147 HGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDL 180 (261)
Q Consensus 147 ~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~ 180 (261)
+.+.+.|+.|++.|.+++++|+.+.. +..+++.+
T Consensus 20 ~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~ 54 (204)
T TIGR01484 20 PETIEALERLREAGVKVVLVTGRSLAEIKELLKQL 54 (204)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhC
Confidence 34556777777777888888887765 56566553
No 193
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=96.80 E-value=0.049 Score=47.79 Aligned_cols=78 Identities=9% Similarity=0.061 Sum_probs=45.6
Q ss_pred HHHHHHHCCCeEEEEeCCchH-HHHHHHh-cCcccccc--------eEEecCCCCCCCCCHHH-HHHHHHHcCCCCCcEE
Q 024886 152 SILLLKDAGVKVAVVSNFDTR-LRKLLKD-LNVIDLFD--------AVVISSEVGCEKPDPRI-FKAALDQMSVEASRTV 220 (261)
Q Consensus 152 ~l~~L~~~g~~i~i~T~~~~~-~~~~l~~-~gl~~~f~--------~i~~~~~~~~~Kp~~~~-~~~~~~~l~~~~~~~l 220 (261)
..+.++..| +++|+|.++.. ++.+++. +|.+..+. +.++.-- .++...+. ...+.+.+|- ....+
T Consensus 101 ~~~~~~~~g-~~vVVTAsPrvmVEpFake~LG~D~VvGTEL~v~~~G~~TG~~--~G~n~~ek~~~rl~~~~g~-~~~~v 176 (498)
T PLN02499 101 AWKVFSSCD-KRVVVTRMPRVMVERFAKEHLRADEVIGSELVVNRFGFATGFI--RGTDVDQSVANRVANLFVD-ERPQL 176 (498)
T ss_pred HHHHHHcCC-eEEEEeCCHHHHHHHHHHHhcCCceEEeeeEEEeeccEEEEEE--ecCccHHHHHHHHHHHhCc-cCcee
Confidence 556666777 99999999988 7999998 77643321 1111111 12333333 5555566763 23467
Q ss_pred EEcCCchhhhHHHH
Q 024886 221 HIGDDEKADKQGAN 234 (261)
Q Consensus 221 ~iGD~~~~Di~~a~ 234 (261)
-+||. ..|-.-..
T Consensus 177 g~~~~-~~~~~f~~ 189 (498)
T PLN02499 177 GLGRI-SASSSFLS 189 (498)
T ss_pred cccCC-cccchhhh
Confidence 78886 55554444
No 194
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=96.78 E-value=0.0039 Score=59.55 Aligned_cols=112 Identities=13% Similarity=0.155 Sum_probs=78.7
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccc--eEEecCCCC----------------CCCCCHHH
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFD--AVVISSEVG----------------CEKPDPRI 204 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~--~i~~~~~~~----------------~~Kp~~~~ 204 (261)
+|.+++.++++.|++.|+++.++|+.... ...+-+..|+...-+ .++.+.+.. ...-.|+=
T Consensus 547 ppr~~v~~aI~~l~~AGI~v~MiTGD~~~TA~aIa~~~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~~~VfARvsP~q 626 (917)
T COG0474 547 PPREDVKEAIEELREAGIKVWMITGDHVETAIAIAKECGIEAEAESALVIDGAELDALSDEELAELVEELSVFARVSPEQ 626 (917)
T ss_pred CCCccHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHcCCCCCCCceeEeehHHhhhcCHHHHHHHhhhCcEEEEcCHHH
Confidence 67899999999999999999999997777 789999999754332 243332211 12223333
Q ss_pred HHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCChHHHHHh
Q 024886 205 FKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFSDVQNR 256 (261)
Q Consensus 205 ~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~~ 256 (261)
-..+.+.++-...-+.+.||. .||+.+.+.|.++....+.|.+-.++..++
T Consensus 627 K~~IV~~lq~~g~vVamtGDG-vNDapALk~ADVGIamg~~Gtdaak~Aadi 677 (917)
T COG0474 627 KARIVEALQKSGHVVAMTGDG-VNDAPALKAADVGIAMGGEGTDAAKEAADI 677 (917)
T ss_pred HHHHHHHHHhCCCEEEEeCCC-chhHHHHHhcCccEEecccHHHHHHhhcce
Confidence 445555555556789999998 899999999998875555564444444433
No 195
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=96.75 E-value=0.04 Score=44.48 Aligned_cols=50 Identities=14% Similarity=0.171 Sum_probs=40.8
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCc---hH-HHHHHHhcCcccccceEEecC
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFD---TR-LRKLLKDLNVIDLFDAVVISS 193 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~---~~-~~~~l~~~gl~~~f~~i~~~~ 193 (261)
.++|++.++++.|+++|.+++++||+. .. +...++.+|++...+.++++.
T Consensus 17 ~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~~~~iit~~ 70 (249)
T TIGR01457 17 ERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPATLETVFTAS 70 (249)
T ss_pred eeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEeeHH
Confidence 667899999999999999999999833 33 577888899876667777763
No 196
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=96.71 E-value=0.012 Score=46.81 Aligned_cols=74 Identities=14% Similarity=0.130 Sum_probs=48.3
Q ss_pred CCeEEEEeCCchH-HH---HHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHh
Q 024886 160 GVKVAVVSNFDTR-LR---KLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANS 235 (261)
Q Consensus 160 g~~i~i~T~~~~~-~~---~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~ 235 (261)
.+++++||..... .. .-|+..|+. +|..+.-.. ..|.. +++.++- . +||.|. ...++.|.
T Consensus 186 piRtalVTAR~apah~RvI~TLr~Wgv~--vDEafFLgG--~~K~~------vL~~~~p--h--IFFDDQ-~~H~~~a~- 249 (264)
T PF06189_consen 186 PIRTALVTARSAPAHERVIRTLRSWGVR--VDEAFFLGG--LPKGP------VLKAFRP--H--IFFDDQ-DGHLESAS- 249 (264)
T ss_pred ceEEEEEEcCCCchhHHHHHHHHHcCCc--HhHHHHhCC--CchhH------HHHhhCC--C--EeecCc-hhhhhHhh-
Confidence 4899999986543 33 345555654 555444332 22322 4555553 3 889887 89999998
Q ss_pred CCCeEEEECCCCCC
Q 024886 236 LGIDCWLWGIDVKT 249 (261)
Q Consensus 236 ~G~~~i~v~~~~~~ 249 (261)
.++++.+|+.++.+
T Consensus 250 ~~vps~hVP~gv~n 263 (264)
T PF06189_consen 250 KVVPSGHVPYGVAN 263 (264)
T ss_pred cCCCEEeccCCcCC
Confidence 88899999888654
No 197
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=96.59 E-value=0.0099 Score=55.06 Aligned_cols=99 Identities=14% Similarity=0.225 Sum_probs=68.7
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEE
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHI 222 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~i 222 (261)
.+.|++...++.|+..|++++++|+.+.. ++.+-+..| ++.+++ +..+..| ....+++.-....+.||
T Consensus 723 ~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~svA~~VG----i~~V~a-ev~P~~K------~~~Ik~lq~~~~~VaMV 791 (951)
T KOG0207|consen 723 QVRPDAALAVAELKSMGIKVVMLTGDNDAAARSVAQQVG----IDNVYA-EVLPEQK------AEKIKEIQKNGGPVAMV 791 (951)
T ss_pred ccchhHHHHHHHHHhcCceEEEEcCCCHHHHHHHHHhhC----cceEEe-ccCchhh------HHHHHHHHhcCCcEEEE
Confidence 45789999999999999999999997776 788889999 455553 2222222 23344444444679999
Q ss_pred cCCchhhhHHHHhCCCeEEEECCCCCChHHHHH
Q 024886 223 GDDEKADKQGANSLGIDCWLWGIDVKTFSDVQN 255 (261)
Q Consensus 223 GD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~ 255 (261)
||. .||-.+...+.++. .++.+.+...|.++
T Consensus 792 GDG-INDaPALA~AdVGI-aig~gs~vAieaAD 822 (951)
T KOG0207|consen 792 GDG-INDAPALAQADVGI-AIGAGSDVAIEAAD 822 (951)
T ss_pred eCC-CCccHHHHhhccce-eeccccHHHHhhCC
Confidence 998 89998888877664 44444333333333
No 198
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=96.56 E-value=0.007 Score=58.50 Aligned_cols=99 Identities=16% Similarity=0.174 Sum_probs=68.0
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCccccc------------------------ceEEecCCC---
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLF------------------------DAVVISSEV--- 195 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f------------------------~~i~~~~~~--- 195 (261)
++.|++.+.++.+++.|+++.++|+.... +..+.+..|+..-- ..++.+.+.
T Consensus 568 plr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vi~G~~l~~l 647 (997)
T TIGR01106 568 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDM 647 (997)
T ss_pred CChHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCccchhhhhhhccccccccccccccceEEEhHHhhhC
Confidence 45789999999999999999999998876 78888888873210 012222111
Q ss_pred ---------------CCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEEC
Q 024886 196 ---------------GCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWG 244 (261)
Q Consensus 196 ---------------~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~ 244 (261)
-...-.|+--..+.+.+.-...-+.++||. .||+.+.+.|.++. .++
T Consensus 648 ~~~el~~~~~~~~~~VfaR~sPeqK~~IV~~lq~~g~vv~~~GDG-~ND~paLk~AdVGi-amg 709 (997)
T TIGR01106 648 TSEQLDEILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDG-VNDSPALKKADIGV-AMG 709 (997)
T ss_pred CHHHHHHHHHhcCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCC-cccHHHHhhCCcce-ecC
Confidence 112223334444455554445679999998 89999999998776 444
No 199
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=96.54 E-value=0.0068 Score=49.43 Aligned_cols=37 Identities=24% Similarity=0.296 Sum_probs=24.9
Q ss_pred eCccHHHHHHHHHH-CCCeEEEEeCCchH-HHHHHHhcC
Q 024886 145 LPHGAYQSILLLKD-AGVKVAVVSNFDTR-LRKLLKDLN 181 (261)
Q Consensus 145 ~~~g~~~~l~~L~~-~g~~i~i~T~~~~~-~~~~l~~~g 181 (261)
+.+...+.|+.|++ .|+.++|+|+.+.. +..+++.++
T Consensus 37 i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~~~~ 75 (266)
T PRK10187 37 VPDNILQGLQLLATANDGALALISGRSMVELDALAKPYR 75 (266)
T ss_pred CCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcCccc
Confidence 34556677777776 57888888887765 566655444
No 200
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=96.29 E-value=0.018 Score=45.77 Aligned_cols=111 Identities=18% Similarity=0.215 Sum_probs=59.6
Q ss_pred CceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEec----CC----CCCCCCCHHHHH---HH
Q 024886 141 EAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVIS----SE----VGCEKPDPRIFK---AA 208 (261)
Q Consensus 141 ~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~----~~----~~~~Kp~~~~~~---~~ 208 (261)
..+.+.+|+.++++.|.++++++.|+|++-.+ +..+++..|....-=.+++- ++ .+..-|-...|. .+
T Consensus 87 s~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~~~~~~Nv~VvSN~M~Fd~~g~l~gF~~~lIH~~NKn~~~ 166 (246)
T PF05822_consen 87 SDIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQAGVFHPNVKVVSNFMDFDEDGVLVGFKGPLIHTFNKNESA 166 (246)
T ss_dssp S---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHTT--BTTEEEEEE-EEE-TTSBEEEE-SS---TT-HHHHH
T ss_pred cchhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHcCCCCCCeEEEeeeEEECCcceEeecCCCceEEeeCCccc
Confidence 44689999999999999999999999999988 69999988643211122221 11 111122111111 11
Q ss_pred ------HHHcCCCCCcEEEEcCCchhhhHHHHhC-CCeE-EEECCCCCChHHH
Q 024886 209 ------LDQMSVEASRTVHIGDDEKADKQGANSL-GIDC-WLWGIDVKTFSDV 253 (261)
Q Consensus 209 ------~~~l~~~~~~~l~iGD~~~~Di~~a~~~-G~~~-i~v~~~~~~~~el 253 (261)
.+.+. ...+++..||+ .-|+.||..+ .... +-++.=....++.
T Consensus 167 l~~~~~~~~~~-~R~NvlLlGDs-lgD~~Ma~G~~~~~~~lkIGFLn~~ve~~ 217 (246)
T PF05822_consen 167 LEDSPYFKQLK-KRTNVLLLGDS-LGDLHMADGVPDEENVLKIGFLNDKVEEN 217 (246)
T ss_dssp HTTHHHHHCTT-T--EEEEEESS-SGGGGTTTT-S--SEEEEEEEE-SSHHHH
T ss_pred ccCchHHHHhc-cCCcEEEecCc-cCChHhhcCCCccccEEEEEecccCHHHH
Confidence 12222 36789999999 7999999877 4433 3344444555553
No 201
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.29 E-value=0.0038 Score=45.25 Aligned_cols=96 Identities=20% Similarity=0.157 Sum_probs=59.0
Q ss_pred eeCccHHHHHHHHHHC-C-CeEEEEeCCc--------hH-HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHH-
Q 024886 144 HLPHGAYQSILLLKDA-G-VKVAVVSNFD--------TR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQ- 211 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~-g-~~i~i~T~~~--------~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~- 211 (261)
.++|....-++.+++. | ..+.++||+- .+ .+.+-.+.|+.- + .. ...||. .-++....
T Consensus 61 ~Iwp~~l~~ie~~~~vygek~i~v~SNsaG~~~~D~d~s~Ak~le~k~gIpV----l--RH--s~kKP~--ct~E~~~y~ 130 (190)
T KOG2961|consen 61 AIWPPLLPSIERCKAVYGEKDIAVFSNSAGLTEYDHDDSKAKALEAKIGIPV----L--RH--SVKKPA--CTAEEVEYH 130 (190)
T ss_pred ccCchhHHHHHHHHHHhCcccEEEEecCcCccccCCchHHHHHHHHhhCCce----E--ee--cccCCC--ccHHHHHHH
Confidence 4445555555555553 2 6788998842 11 233333445421 1 11 123443 33333333
Q ss_pred cC----CCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCC
Q 024886 212 MS----VEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKT 249 (261)
Q Consensus 212 l~----~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~ 249 (261)
+| .+++++++|||.+-.||-+|...|.-.+|..+++..
T Consensus 131 ~~Nshv~~~se~~~vGDRlfTDI~~aN~mGs~gVw~~~gv~~ 172 (190)
T KOG2961|consen 131 FGNSHVCTSSELIMVGDRLFTDIVYANRMGSLGVWTEPGVRA 172 (190)
T ss_pred hCCcccCChhHeEEEccchhhhHhhhhhccceeEEecccccc
Confidence 34 679999999999999999999999999998888553
No 202
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.26 E-value=0.4 Score=37.55 Aligned_cols=39 Identities=26% Similarity=0.268 Sum_probs=28.4
Q ss_pred eeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCc
Q 024886 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNV 182 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl 182 (261)
.++.||+.+++..|... .+-+|+|.+..+ +.......|+
T Consensus 82 a~lvPgA~etm~~l~~~-~tp~v~STSY~qy~~r~a~~ig~ 121 (315)
T COG4030 82 AKLVPGAEETMATLQER-WTPVVISTSYTQYLRRTASMIGV 121 (315)
T ss_pred cccCCChHHHHHHHhcc-CCceEEeccHHHHHHHHHHhcCC
Confidence 48899999999998776 666777766655 5666555554
No 203
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=96.26 E-value=0.015 Score=53.40 Aligned_cols=112 Identities=12% Similarity=0.214 Sum_probs=77.4
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccc----eEEecCCCC----------------CCCCCH
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFD----AVVISSEVG----------------CEKPDP 202 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~----~i~~~~~~~----------------~~Kp~~ 202 (261)
+|.+++.+.++.+++.|+++.++|+.... ...+-++.|+-..-+ ..++..+.. ...-.|
T Consensus 584 PPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~~~~ed~~~~~~TG~efD~ls~~~~~~~~~~~~vFaR~~P 663 (972)
T KOG0202|consen 584 PPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGIFSEDEDVSSMALTGSEFDDLSDEELDDAVRRVLVFARAEP 663 (972)
T ss_pred CCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHhCCCcCCccccccccchhhhhcCCHHHHHHHhhcceEEEecCc
Confidence 67899999999999999999999998877 799999999754333 222221111 111122
Q ss_pred HHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEEC-CCCCChHHHHHhh
Q 024886 203 RIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWG-IDVKTFSDVQNRI 257 (261)
Q Consensus 203 ~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~-~~~~~~~el~~~l 257 (261)
.--..+.+.|+-..+=+-|-||. .||..+.+.|.++. .++ +|.+-.+|..+++
T Consensus 664 ~HK~kIVeaLq~~geivAMTGDG-VNDApALK~AdIGI-AMG~~GTdVaKeAsDMV 717 (972)
T KOG0202|consen 664 QHKLKIVEALQSRGEVVAMTGDG-VNDAPALKKADIGI-AMGISGTDVAKEASDMV 717 (972)
T ss_pred hhHHHHHHHHHhcCCEEEecCCC-ccchhhhhhcccce-eecCCccHhhHhhhhcE
Confidence 23344444444445668899998 89999999998776 566 7766666666555
No 204
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=96.15 E-value=0.19 Score=44.13 Aligned_cols=99 Identities=14% Similarity=0.185 Sum_probs=77.6
Q ss_pred CccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEcC
Q 024886 146 PHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGD 224 (261)
Q Consensus 146 ~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD 224 (261)
-||++|=+.+|++-|++...+|+.++- ...+-...|++++... .+ |+--..+.++.+-...=+-|.||
T Consensus 449 K~Gi~ERf~elR~MgIkTvM~TGDN~~TAa~IA~EAGVDdfiAe---------at--PEdK~~~I~~eQ~~grlVAMtGD 517 (681)
T COG2216 449 KPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFIAE---------AT--PEDKLALIRQEQAEGRLVAMTGD 517 (681)
T ss_pred chhHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHhCchhhhhc---------CC--hHHHHHHHHHHHhcCcEEEEcCC
Confidence 689999999999999999999997766 6888888998765432 23 33555666666666777899999
Q ss_pred CchhhhHHHHhCCCeEEEECCCCCChHHHHHhh
Q 024886 225 DEKADKQGANSLGIDCWLWGIDVKTFSDVQNRI 257 (261)
Q Consensus 225 ~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~~l 257 (261)
. .||..+...+.... .+++|....+|..+++
T Consensus 518 G-TNDAPALAqAdVg~-AMNsGTqAAkEAaNMV 548 (681)
T COG2216 518 G-TNDAPALAQADVGV-AMNSGTQAAKEAANMV 548 (681)
T ss_pred C-CCcchhhhhcchhh-hhccccHHHHHhhccc
Confidence 8 89999888888665 7888877777777665
No 205
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.14 E-value=0.02 Score=45.23 Aligned_cols=113 Identities=12% Similarity=0.095 Sum_probs=69.4
Q ss_pred CCceeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhc-CcccccceEEec----CC----CCCCCCCHHH-----
Q 024886 140 GEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDL-NVIDLFDAVVIS----SE----VGCEKPDPRI----- 204 (261)
Q Consensus 140 ~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~-gl~~~f~~i~~~----~~----~~~~Kp~~~~----- 204 (261)
...+.+.+|..++++.|..+++++.|+|++-.. ++.+++.. ++-+ +-.+++. ++ .+..+|-...
T Consensus 134 ~s~i~lReg~~~ff~~L~~~~IP~~iFSAGigdiiEev~~q~~~~~p-n~k~vSN~~~F~edg~l~gF~~~Lihtfnkn~ 212 (298)
T KOG3128|consen 134 ESNIALREGYEEFFEALQAHEIPLLIFSAGIGDIIEEVTRQKLVLHP-NVKFVSNYMDFDEDGNLCGFSQPLIHTFNKNS 212 (298)
T ss_pred HhhHHHHHHHHHHHHHHHhCCCceEEEecchHHHHHHHHHHHhccCc-cHHhhhhhhhhcccchhhhhhHHHHHHHccch
Confidence 334577889999999999999999999998877 56666554 3322 2222221 11 1122222111
Q ss_pred --HHHHHHHc--CCCCCcEEEEcCCchhhhHHHHhC-CCeE-EEECCCCCChHHHH
Q 024886 205 --FKAALDQM--SVEASRTVHIGDDEKADKQGANSL-GIDC-WLWGIDVKTFSDVQ 254 (261)
Q Consensus 205 --~~~~~~~l--~~~~~~~l~iGD~~~~Di~~a~~~-G~~~-i~v~~~~~~~~el~ 254 (261)
.+...+.+ .-...++++-||+ .-|+.||..+ ++.. +.++...+..+|..
T Consensus 213 ~v~~~~s~yf~~~~~~~nVillGds-igdl~ma~gv~~~~~iLkig~l~d~vee~~ 267 (298)
T KOG3128|consen 213 SVLQNESEYFHQLAGRVNVILLGDS-IGDLHMADGVPRVGHILKIGYLNDSVEEAL 267 (298)
T ss_pred HHHHhhhHHHhhccCCceEEEeccc-cccchhhcCCcccccceeeecccchHHHHH
Confidence 22222222 2346789999999 8999999876 4433 35666666666643
No 206
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=96.01 E-value=0.039 Score=49.31 Aligned_cols=82 Identities=17% Similarity=0.289 Sum_probs=61.5
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEE
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHI 222 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~i 222 (261)
++.|++.+.++.|++.|++++++|+.... ...+-+.+|+ + ..-.|+--..+.+.+.-....+.++
T Consensus 347 ~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia~~lgi-------~-------~~~~p~~K~~~v~~l~~~g~~v~~v 412 (499)
T TIGR01494 347 PLRDDAKETISELREAGIRVIMLTGDNVLTAKAIAKELGI-------F-------ARVTPEEKAALVEALQKKGRVVAMT 412 (499)
T ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCc-------e-------eccCHHHHHHHHHHHHHCCCEEEEE
Confidence 56889999999999999999999997776 6788888886 1 1123333334444443334779999
Q ss_pred cCCchhhhHHHHhCCCeE
Q 024886 223 GDDEKADKQGANSLGIDC 240 (261)
Q Consensus 223 GD~~~~Di~~a~~~G~~~ 240 (261)
||. .||..+.+.++++.
T Consensus 413 GDg-~nD~~al~~Advgi 429 (499)
T TIGR01494 413 GDG-VNDAPALKKADVGI 429 (499)
T ss_pred CCC-hhhHHHHHhCCCcc
Confidence 998 89999999887663
No 207
>PRK10444 UMP phosphatase; Provisional
Probab=96.00 E-value=0.16 Score=40.89 Aligned_cols=49 Identities=16% Similarity=0.160 Sum_probs=38.8
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH----HHHHHHhcCcccccceEEec
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR----LRKLLKDLNVIDLFDAVVIS 192 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~----~~~~l~~~gl~~~f~~i~~~ 192 (261)
.++||+.++++.|++.|.+++++||+... ....++.+|+.--.+.++++
T Consensus 17 ~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~~~~~i~ts 69 (248)
T PRK10444 17 VAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFYTS 69 (248)
T ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCHhhEecH
Confidence 77899999999999999999999997643 35566778875445666655
No 208
>PLN02423 phosphomannomutase
Probab=95.97 E-value=0.0059 Score=49.17 Aligned_cols=55 Identities=9% Similarity=-0.130 Sum_probs=41.1
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCcEEEEcC----CchhhhHHHHhCCCeEEEECCCCCChHHHHH
Q 024886 195 VGCEKPDPRIFKAALDQMSVEASRTVHIGD----DEKADKQGANSLGIDCWLWGIDVKTFSDVQN 255 (261)
Q Consensus 195 ~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD----~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~ 255 (261)
...+-.|..+++.++ +++++++||| + .||++|.+..|..++-|..+.++.+.+.+
T Consensus 184 ~~~gvnKg~al~~L~-----~~~e~~aFGD~~~~~-~ND~eMl~~~~~~~~~~~~~~~~~~~~~~ 242 (245)
T PLN02423 184 FPQGWDKTYCLQFLE-----DFDEIHFFGDKTYEG-GNDHEIFESERTIGHTVTSPDDTREQCTA 242 (245)
T ss_pred eeCCCCHHHHHHHhc-----CcCeEEEEeccCCCC-CCcHHHHhCCCcceEEeCCHHHHHHHHHH
Confidence 444555666666666 8999999999 6 79999999999999888665554444433
No 209
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=95.89 E-value=0.068 Score=43.36 Aligned_cols=49 Identities=27% Similarity=0.223 Sum_probs=39.0
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH----HHHHHHhcCcccccceEEec
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR----LRKLLKDLNVIDLFDAVVIS 192 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~----~~~~l~~~gl~~~f~~i~~~ 192 (261)
.++|++.++++.|+++|++++++||++.. ....++.+|+.--.+.++++
T Consensus 21 ~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~~~~~i~ts 73 (257)
T TIGR01458 21 VAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDISEDEVFTP 73 (257)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCCCHHHeEcH
Confidence 48899999999999999999999996532 46778888876445666654
No 210
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=95.52 E-value=0.15 Score=49.85 Aligned_cols=40 Identities=13% Similarity=0.218 Sum_probs=35.4
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcc
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVI 183 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~ 183 (261)
++.|++.+.++.|++.|+++.++|+.... ...+.+..|+.
T Consensus 656 ~lr~~~~~~I~~l~~agi~v~miTGD~~~TA~~iA~~~gii 696 (1054)
T TIGR01657 656 PLKPDTKEVIKELKRASIRTVMITGDNPLTAVHVARECGIV 696 (1054)
T ss_pred CCCccHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCC
Confidence 57899999999999999999999997776 68888888874
No 211
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=95.51 E-value=0.28 Score=38.25 Aligned_cols=93 Identities=9% Similarity=0.064 Sum_probs=47.6
Q ss_pred CccHHHHHHHHHHCCCeEEEEeCCchH----HHHHHHhcCcccccc-eEEecCCCCCCCCCHHHHHHHHHHcC-CCCC-c
Q 024886 146 PHGAYQSILLLKDAGVKVAVVSNFDTR----LRKLLKDLNVIDLFD-AVVISSEVGCEKPDPRIFKAALDQMS-VEAS-R 218 (261)
Q Consensus 146 ~~g~~~~l~~L~~~g~~i~i~T~~~~~----~~~~l~~~gl~~~f~-~i~~~~~~~~~Kp~~~~~~~~~~~l~-~~~~-~ 218 (261)
.|-....|..+++ +...|+.-+... ....|...|+.-... ..+..-+...+|.+ +...+++.+. .... -
T Consensus 136 lpre~aaLa~~rE--yseti~~rs~d~~~~~~~~~L~e~glt~v~garf~~v~~as~gKg~--Aa~~ll~~y~rl~~~r~ 211 (274)
T COG3769 136 LPREQAALAMLRE--YSETIIWRSSDERMAQFTARLNERGLTFVHGARFWHVLDASAGKGQ--AANWLLETYRRLGGART 211 (274)
T ss_pred CChHHhHHHHHHH--hhhheeecccchHHHHHHHHHHhcCceEEeccceEEEeccccCccH--HHHHHHHHHHhcCceeE
Confidence 3444555655555 344444432222 366777777641111 11111222234444 4555555442 2233 4
Q ss_pred EEEEcCCchhhhHHHHhCCCeEEEEC
Q 024886 219 TVHIGDDEKADKQGANSLGIDCWLWG 244 (261)
Q Consensus 219 ~l~iGD~~~~Di~~a~~~G~~~i~v~ 244 (261)
++-+||+ .||+.+... +..++.|+
T Consensus 212 t~~~GDg-~nD~Pl~ev-~d~AfiV~ 235 (274)
T COG3769 212 TLGLGDG-PNDAPLLEV-MDYAFIVK 235 (274)
T ss_pred EEecCCC-CCcccHHHh-hhhheeec
Confidence 8999999 799977664 44555554
No 212
>PLN02423 phosphomannomutase
Probab=95.38 E-value=0.018 Score=46.42 Aligned_cols=30 Identities=13% Similarity=0.194 Sum_probs=20.1
Q ss_pred cccEEE-EccCCccccccccHHHHHHHHHHH
Q 024886 49 AYDAVL-LDAGGTLLQLAEPVEETYASIARK 78 (261)
Q Consensus 49 ~~k~ii-fD~DGTL~d~~~~~~~~~~~~~~~ 78 (261)
+++.++ |||||||++.+..+.....+++++
T Consensus 5 ~~~~i~~~D~DGTLl~~~~~i~~~~~~ai~~ 35 (245)
T PLN02423 5 KPGVIALFDVDGTLTAPRKEATPEMLEFMKE 35 (245)
T ss_pred ccceEEEEeccCCCcCCCCcCCHHHHHHHHH
Confidence 456555 999999999876555444444443
No 213
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=94.94 E-value=0.19 Score=40.21 Aligned_cols=83 Identities=20% Similarity=0.230 Sum_probs=54.0
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCch---H-HHHHHHh-cCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCc
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDT---R-LRKLLKD-LNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASR 218 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~---~-~~~~l~~-~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~ 218 (261)
.++|++.++++.++++|+++.++||+.. . ....+.. +|+.-..+.++.+... +..++.++. +...
T Consensus 14 ~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~~iits~~~--------~~~~l~~~~--~~~~ 83 (236)
T TIGR01460 14 KPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSPDQIITSGSV--------TKDLLRQRF--EGEK 83 (236)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCHHHeeeHHHH--------HHHHHHHhC--CCCE
Confidence 6789999999999999999999998652 2 3455555 7876556777665431 233333332 2245
Q ss_pred EEEEcCCchhhhHHHHhCCC
Q 024886 219 TVHIGDDEKADKQGANSLGI 238 (261)
Q Consensus 219 ~l~iGD~~~~Di~~a~~~G~ 238 (261)
++++|.. ...+.++..|+
T Consensus 84 v~v~G~~--~~~~~l~~~g~ 101 (236)
T TIGR01460 84 VYVIGVG--ELRESLEGLGF 101 (236)
T ss_pred EEEECCH--HHHHHHHHcCC
Confidence 7777763 44555566665
No 214
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=94.79 E-value=0.16 Score=49.83 Aligned_cols=39 Identities=23% Similarity=0.320 Sum_probs=32.5
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCc
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNV 182 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl 182 (261)
++.||+.++++.|++.|++++++|+.... +..+.+..|+
T Consensus 631 ~lq~~v~etI~~L~~AGIkv~mlTGD~~~TA~~IA~~~~i 670 (1057)
T TIGR01652 631 KLQEGVPETIELLRQAGIKIWVLTGDKVETAINIGYSCRL 670 (1057)
T ss_pred hhhhccHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHhCC
Confidence 57899999999999999999999997665 5666665554
No 215
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=94.69 E-value=0.33 Score=40.07 Aligned_cols=84 Identities=19% Similarity=0.237 Sum_probs=58.3
Q ss_pred eeeCccHHHHHHHHHHCC-CeEEEEeCCchHH----HHHHHhcCc----------ccccceEEecCCCCCCCCCHHHHHH
Q 024886 143 WHLPHGAYQSILLLKDAG-VKVAVVSNFDTRL----RKLLKDLNV----------IDLFDAVVISSEVGCEKPDPRIFKA 207 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g-~~i~i~T~~~~~~----~~~l~~~gl----------~~~f~~i~~~~~~~~~Kp~~~~~~~ 207 (261)
..++||+-.+.+.|.+.| .+++.+||++-.. ++++...++ ...++.++.+.... |...+.-
T Consensus 195 r~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~f~~L~efi~~~~~P~GPl~L~~~g~~~~~i~~sga~r----K~~~l~n 270 (373)
T COG4850 195 RQVIPGVSAWYRALTNLGDAPVFYVSNSPWQLFPTLQEFITNRNFPYGPLLLRRWGGVLDNIIESGAAR----KGQSLRN 270 (373)
T ss_pred cCCCCCHHHHHHHHHhcCCCCeEEecCChhHhHHHHHHHHhcCCCCCCchhHhhcCCcccccccchhhh----cccHHHH
Confidence 478999999999999887 8999999988553 444443322 23345665544322 2335665
Q ss_pred HHHHcCCCCCcEEEEcCCchhhhHH
Q 024886 208 ALDQMSVEASRTVHIGDDEKADKQG 232 (261)
Q Consensus 208 ~~~~l~~~~~~~l~iGD~~~~Di~~ 232 (261)
++++++ -.+++.||||-+.|.+.
T Consensus 271 il~~~p--~~kfvLVGDsGE~DpeI 293 (373)
T COG4850 271 ILRRYP--DRKFVLVGDSGEHDPEI 293 (373)
T ss_pred HHHhCC--CceEEEecCCCCcCHHH
Confidence 777765 46799999999999864
No 216
>PLN03017 trehalose-phosphatase
Probab=94.34 E-value=0.1 Score=44.32 Aligned_cols=58 Identities=19% Similarity=0.183 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHcCCCC---CcEEEEcCCchhhhHHHHhCC----CeEEEECC--C-------CCChHHHHHhhh
Q 024886 200 PDPRIFKAALDQMSVEA---SRTVHIGDDEKADKQGANSLG----IDCWLWGI--D-------VKTFSDVQNRIL 258 (261)
Q Consensus 200 p~~~~~~~~~~~l~~~~---~~~l~iGD~~~~Di~~a~~~G----~~~i~v~~--~-------~~~~~el~~~l~ 258 (261)
.|..+.+.+++.++... .-.+|+||+ ..|-.+.+... -.+|.|+. + ..+..++.++|.
T Consensus 283 dKG~Av~~LL~~l~~~~~~~~~pvyiGDD-~TDEDaF~~L~~~~~G~gI~VG~~~k~T~A~y~L~dp~eV~~fL~ 356 (366)
T PLN03017 283 DKGKALEFLLESLGFGNTNNVFPVYIGDD-RTDEDAFKMLRDRGEGFGILVSKFPKDTDASYSLQDPSEVMDFLA 356 (366)
T ss_pred CHHHHHHHHHHhcccccCCCceEEEeCCC-CccHHHHHHHhhcCCceEEEECCCCCCCcceEeCCCHHHHHHHHH
Confidence 34556677777776542 248999999 79988877552 23567773 2 557777776663
No 217
>PLN02580 trehalose-phosphatase
Probab=94.33 E-value=0.086 Score=45.09 Aligned_cols=57 Identities=18% Similarity=0.258 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHcCCCCCc---EEEEcCCchhhhHHHHh-----CCCeEEEECCC---------CCChHHHHHhhh
Q 024886 200 PDPRIFKAALDQMSVEASR---TVHIGDDEKADKQGANS-----LGIDCWLWGID---------VKTFSDVQNRIL 258 (261)
Q Consensus 200 p~~~~~~~~~~~l~~~~~~---~l~iGD~~~~Di~~a~~-----~G~~~i~v~~~---------~~~~~el~~~l~ 258 (261)
.|..+.+.+++.+|++..+ .++|||+ .+|..|.+. .|+. |.|+++ ..+..++.++|.
T Consensus 301 ~KG~Av~~Ll~~~g~~~~d~~~pi~iGDD-~TDedmF~~L~~~~~G~~-I~Vgn~~~~t~A~y~L~dp~eV~~~L~ 374 (384)
T PLN02580 301 NKGKAVEFLLESLGLSNCDDVLPIYIGDD-RTDEDAFKVLREGNRGYG-ILVSSVPKESNAFYSLRDPSEVMEFLK 374 (384)
T ss_pred CHHHHHHHHHHhcCCCcccceeEEEECCC-chHHHHHHhhhccCCceE-EEEecCCCCccceEEcCCHHHHHHHHH
Confidence 4455677888888877653 3899999 799999986 3544 466653 556777776663
No 218
>PLN02151 trehalose-phosphatase
Probab=93.84 E-value=0.14 Score=43.30 Aligned_cols=56 Identities=18% Similarity=0.281 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHcCCCCC---cEEEEcCCchhhhHHHHhC-----CCeEEEECC--C-------CCChHHHHHhhh
Q 024886 201 DPRIFKAALDQMSVEAS---RTVHIGDDEKADKQGANSL-----GIDCWLWGI--D-------VKTFSDVQNRIL 258 (261)
Q Consensus 201 ~~~~~~~~~~~l~~~~~---~~l~iGD~~~~Di~~a~~~-----G~~~i~v~~--~-------~~~~~el~~~l~ 258 (261)
|..+.+.+++.++.... -++|+||+ ..|-.+.+.. |+ .|.|+. + ..+..++.++|.
T Consensus 270 KG~Av~~Ll~~~~~~~~~~~~pvyiGDD-~TDEDaF~~L~~~~~G~-gI~Vg~~~k~T~A~y~L~dp~eV~~~L~ 342 (354)
T PLN02151 270 KGKALEFLLESLGYANCTDVFPIYIGDD-RTDEDAFKILRDKKQGL-GILVSKYAKETNASYSLQEPDEVMEFLE 342 (354)
T ss_pred HHHHHHHHHHhcccccCCCCeEEEEcCC-CcHHHHHHHHhhcCCCc-cEEeccCCCCCcceEeCCCHHHHHHHHH
Confidence 34455566666554322 27999999 7998887644 43 345652 1 556777776663
No 219
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=93.53 E-value=0.19 Score=38.41 Aligned_cols=48 Identities=21% Similarity=0.284 Sum_probs=29.4
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcC--cccccceEEecCC
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLN--VIDLFDAVVISSE 194 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~~~~~l~~~g--l~~~f~~i~~~~~ 194 (261)
...|.+.++|+.|++. +.++++-+++-. ...+.+| +.+.||.++.-..
T Consensus 28 ~~~~e~~~~l~~lr~~-v~ig~VggsDl~--k~~eqlG~~Vl~~fDY~F~ENG 77 (252)
T KOG3189|consen 28 KVTPEMLEFLQKLRKK-VTIGFVGGSDLS--KQQEQLGDNVLEEFDYVFSENG 77 (252)
T ss_pred cCCHHHHHHHHHHhhh-eEEEEeecHHHH--HHHHHhchhHHhhhcccccCCC
Confidence 3445666777778777 888888776643 2233333 3455777766544
No 220
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=93.11 E-value=0.17 Score=41.00 Aligned_cols=36 Identities=17% Similarity=0.333 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCC
Q 024886 201 DPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLG 237 (261)
Q Consensus 201 ~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G 237 (261)
+...+.++.++.+....-+++.||+ ..|=.+...+.
T Consensus 183 KG~a~~~i~~~~~~~~~~~~~aGDD-~TDE~~F~~v~ 218 (266)
T COG1877 183 KGAAIKYIMDELPFDGRFPIFAGDD-LTDEDAFAAVN 218 (266)
T ss_pred hHHHHHHHHhcCCCCCCcceecCCC-CccHHHHHhhc
Confidence 4445666666666655568888888 57766665554
No 221
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=93.04 E-value=1 Score=31.79 Aligned_cols=81 Identities=14% Similarity=0.107 Sum_probs=58.3
Q ss_pred eeeCccHHHHHHHHHHCCCeEEEEeCCchH--HHHHHHhcCcc---------cccceEEecCCCCCCCCCHHHHHHHHHH
Q 024886 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTR--LRKLLKDLNVI---------DLFDAVVISSEVGCEKPDPRIFKAALDQ 211 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~--~~~~l~~~gl~---------~~f~~i~~~~~~~~~Kp~~~~~~~~~~~ 211 (261)
...|+++...|..|+++|+++.++|++... +...|+.+.+. ..|+.+-..+. .+...|..+-+.
T Consensus 43 ~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~fkvk~~Gvlkps~e~ft~~~~g~g-----sklghfke~~n~ 117 (144)
T KOG4549|consen 43 MIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLETFKVKQTGVLKPSLEEFTFEAVGDG-----SKLGHFKEFTNN 117 (144)
T ss_pred eeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhccCcccccchhhhcCceeeecCc-----ccchhHHHHhhc
Confidence 578999999999999999999999987643 57788776543 22333333222 233467888888
Q ss_pred cCCCCCcEEEEcCCchhh
Q 024886 212 MSVEASRTVHIGDDEKAD 229 (261)
Q Consensus 212 l~~~~~~~l~iGD~~~~D 229 (261)
.|+.-.+..++.|. ..+
T Consensus 118 s~~~~k~~~~fdDe-srn 134 (144)
T KOG4549|consen 118 SNSIEKNKQVFDDE-SRN 134 (144)
T ss_pred cCcchhceeeeccc-ccC
Confidence 89988888888665 444
No 222
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=92.83 E-value=1.7 Score=35.63 Aligned_cols=87 Identities=16% Similarity=0.214 Sum_probs=52.1
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-H---HHHHHhcCcccc-cceEEecCCCCCCCCCHHHHHHHHHHcCCCCCc
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-L---RKLLKDLNVIDL-FDAVVISSEVGCEKPDPRIFKAALDQMSVEASR 218 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~---~~~l~~~gl~~~-f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~ 218 (261)
.+.||+.++++.|+..|..+.++||++.. . .+..+.+|+... -+.++ -|......++-+.. .....
T Consensus 38 ~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~v~e~~i~--------ssa~~~a~ylk~~~-~~~k~ 108 (306)
T KOG2882|consen 38 KPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNSVKEENIF--------SSAYAIADYLKKRK-PFGKK 108 (306)
T ss_pred CCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccccCccccc--------ChHHHHHHHHHHhC-cCCCe
Confidence 78999999999999999999999997744 3 344556676531 12222 22222333333332 34456
Q ss_pred EEEEcCCchhhhHHHHhCCCeEE
Q 024886 219 TVHIGDDEKADKQGANSLGIDCW 241 (261)
Q Consensus 219 ~l~iGD~~~~Di~~a~~~G~~~i 241 (261)
++++|-. .=-+...++|+...
T Consensus 109 Vyvig~~--gi~~eL~~aG~~~~ 129 (306)
T KOG2882|consen 109 VYVIGEE--GIREELDEAGFEYF 129 (306)
T ss_pred EEEecch--hhhHHHHHcCceee
Confidence 6666654 22345566665553
No 223
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=92.18 E-value=0.29 Score=44.07 Aligned_cols=92 Identities=18% Similarity=0.226 Sum_probs=46.6
Q ss_pred cHHHHHHHHHHCCCeEEEEeCCc---hH-HHHHHHhcCcc--cccc--------eEEec--CCCCCCCCC---HHHHHHH
Q 024886 148 GAYQSILLLKDAGVKVAVVSNFD---TR-LRKLLKDLNVI--DLFD--------AVVIS--SEVGCEKPD---PRIFKAA 208 (261)
Q Consensus 148 g~~~~l~~L~~~g~~i~i~T~~~---~~-~~~~l~~~gl~--~~f~--------~i~~~--~~~~~~Kp~---~~~~~~~ 208 (261)
|+..+....+++||++..+|+.. .. -+.+|+.+.-+ ...+ .++.+ .++-..||. ...+.-+
T Consensus 562 GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL~nv~QdG~~LPdGPViLSPd~lf~Al~REVI~RkPe~FKIAcL~DI 641 (738)
T KOG2116|consen 562 GVAKLYTKIKENGYKILYLSARAIGQADSTRQYLKNVEQDGKKLPDGPVILSPDSLFAALHREVIERKPEVFKIACLTDI 641 (738)
T ss_pred hHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHHHHHhhcCccCCCCCEEeCCCcchHHHHHHHHHcCchhhhHHHHHHH
Confidence 45556666778888888888743 22 24455443211 1112 22211 122334553 2334445
Q ss_pred HHHcCCCCCc-EEEEcCCchhhhHHHHhCCCeE
Q 024886 209 LDQMSVEASR-TVHIGDDEKADKQGANSLGIDC 240 (261)
Q Consensus 209 ~~~l~~~~~~-~l~iGD~~~~Di~~a~~~G~~~ 240 (261)
.+.|.-+..- ..-||.. .+|+-.=+.+|++.
T Consensus 642 k~LF~p~~nPFYAgFGNR-~TDviSY~~VgVP~ 673 (738)
T KOG2116|consen 642 KNLFPPSGNPFYAGFGNR-ITDVISYRQVGVPL 673 (738)
T ss_pred HHhcCCCCCceeeecCCC-cccceeeeeecCCc
Confidence 5555522221 2346664 88888888888763
No 224
>PLN02580 trehalose-phosphatase
Probab=92.03 E-value=0.67 Score=39.77 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=20.8
Q ss_pred HHHHHHhcCcccccc--eEEecCCCCCCCCCHHHHHHHHH
Q 024886 173 LRKLLKDLNVIDLFD--AVVISSEVGCEKPDPRIFKAALD 210 (261)
Q Consensus 173 ~~~~l~~~gl~~~f~--~i~~~~~~~~~Kp~~~~~~~~~~ 210 (261)
++.+++.+|+...=+ .++..|+ ..+.++|+.+..
T Consensus 306 v~~Ll~~~g~~~~d~~~pi~iGDD----~TDedmF~~L~~ 341 (384)
T PLN02580 306 VEFLLESLGLSNCDDVLPIYIGDD----RTDEDAFKVLRE 341 (384)
T ss_pred HHHHHHhcCCCcccceeEEEECCC----chHHHHHHhhhc
Confidence 578888888753211 2454444 447778887654
No 225
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=91.99 E-value=3.4 Score=35.03 Aligned_cols=90 Identities=16% Similarity=0.242 Sum_probs=60.9
Q ss_pred CeEEEEeCCc-hH--HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCC
Q 024886 161 VKVAVVSNFD-TR--LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLG 237 (261)
Q Consensus 161 ~~i~i~T~~~-~~--~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G 237 (261)
+--+++|+.. .. ++..|-.+|-.-.++.|+++..+| +-..|+.+.++||- .-..++|||. ...-.+|++..
T Consensus 371 cvnVlvTttqLipalaKvLL~gLg~~fpiENIYSa~kiG----KescFerI~~RFg~-K~~yvvIgdG-~eee~aAK~ln 444 (468)
T KOG3107|consen 371 CVNVLVTTTQLIPALAKVLLYGLGSSFPIENIYSATKIG----KESCFERIQSRFGR-KVVYVVIGDG-VEEEQAAKALN 444 (468)
T ss_pred eeEEEEeccchhHHHHHHHHHhcCCcccchhhhhhhhcc----HHHHHHHHHHHhCC-ceEEEEecCc-HHHHHHHHhhC
Confidence 3345566543 22 244444555433457888776544 44599999999998 4567889998 67788999999
Q ss_pred CeEEEECCCCCChHHHHHhh
Q 024886 238 IDCWLWGIDVKTFSDVQNRI 257 (261)
Q Consensus 238 ~~~i~v~~~~~~~~el~~~l 257 (261)
|+++-++...+ +..|...|
T Consensus 445 ~PfwrI~~h~D-l~~l~~aL 463 (468)
T KOG3107|consen 445 MPFWRISSHSD-LDALYSAL 463 (468)
T ss_pred CceEeeccCcc-HHHHhhhc
Confidence 99988865543 55555554
No 226
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=91.84 E-value=0.93 Score=38.67 Aligned_cols=100 Identities=17% Similarity=0.097 Sum_probs=68.9
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCchH-HHHHH---HhcCcccccceEEecCC---------------CC-----------
Q 024886 147 HGAYQSILLLKDAGVKVAVVSNFDTR-LRKLL---KDLNVIDLFDAVVISSE---------------VG----------- 196 (261)
Q Consensus 147 ~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l---~~~gl~~~f~~i~~~~~---------------~~----------- 196 (261)
+....++..+++.|.+..++||++-. ....+ -..++..+|+.++.... ..
T Consensus 201 ~~~v~~l~~~r~sGKk~fl~Tns~~~ytd~~mt~~~~~dW~~yfd~v~~~a~Kp~ff~e~~vlreV~t~~g~l~~g~~~~ 280 (424)
T KOG2469|consen 201 GTIVPLLSMLRDSGKKTFLHTNSDWDYTDIFMAFHYGFDWETYFDLVETRAAKPGFFHEGTVLREVEPQEGLLKNGDNTG 280 (424)
T ss_pred CccccchHHHHhhccceEEeeccccchhhHHHHHHhCCCcceeEEEEEEeccCCccccccceeeeeccccccccccccCC
Confidence 33445899999999999999998744 22222 22467788887766420 11
Q ss_pred ----CCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHH-HhCCCeEEEECCC
Q 024886 197 ----CEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGA-NSLGIDCWLWGID 246 (261)
Q Consensus 197 ----~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a-~~~G~~~i~v~~~ 246 (261)
.+.+++.....++..+++...+++++||+--.||--. ++-||.+++|...
T Consensus 281 p~e~~~~ySggs~~~~~~~l~~~g~diLy~gdHi~~dvl~skk~~~wrt~lv~pe 335 (424)
T KOG2469|consen 281 PLEQGGVYSGGSLKTVETSMKVKGKDILYGGDHIWGDVLVSKKRRGWRTVLVAPE 335 (424)
T ss_pred cchhcccCCcchHHHHHHHhcccccceeecccceeeeEEecceecceEEEEEehh
Confidence 2233445678888888998899999999966666544 4559988877543
No 227
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=90.74 E-value=0.93 Score=38.08 Aligned_cols=84 Identities=17% Similarity=0.148 Sum_probs=58.2
Q ss_pred eeCccHHHHHHHHHHC----CCeEEEEeCCc---hH-H-HHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCC
Q 024886 144 HLPHGAYQSILLLKDA----GVKVAVVSNFD---TR-L-RKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSV 214 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~----g~~i~i~T~~~---~~-~-~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~ 214 (261)
.+.|++.++++.|+.. |+++.++||.. .. . +.+.+.+|+.--.+.++.+. .....+++.++
T Consensus 16 ~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~~~~~~i~~s~---------~~~~~ll~~~~- 85 (321)
T TIGR01456 16 KPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVDVSPLQVIQSH---------SPYKSLVNKYE- 85 (321)
T ss_pred cccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCCCCHHHHHhhh---------HHHHHHHHHcC-
Confidence 6689999999999998 99999999865 22 3 33347888764444554432 13345555553
Q ss_pred CCCcEEEEcCCchhhhHHHHhCCCeEE
Q 024886 215 EASRTVHIGDDEKADKQGANSLGIDCW 241 (261)
Q Consensus 215 ~~~~~l~iGD~~~~Di~~a~~~G~~~i 241 (261)
..++++|.+ .-.+.++..|+..+
T Consensus 86 --~~v~viG~~--~~~~~l~~~G~~~v 108 (321)
T TIGR01456 86 --KRILAVGTG--SVRGVAEGYGFQNV 108 (321)
T ss_pred --CceEEEeCh--HHHHHHHHcCCccc
Confidence 258889876 45777888998764
No 228
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=90.63 E-value=1.7 Score=33.76 Aligned_cols=90 Identities=23% Similarity=0.304 Sum_probs=56.0
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH----HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcE
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR----LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRT 219 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~----~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~ 219 (261)
...||+.++++.|++++.++=.+||...+ +...|.++|+.---+.|+++ -+ +-..++++-++.|-
T Consensus 23 ~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~v~eeei~ts--------l~-aa~~~~~~~~lrP~-- 91 (262)
T KOG3040|consen 23 AAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFDVSEEEIFTS--------LP-AARQYLEENQLRPY-- 91 (262)
T ss_pred ccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCCccHHHhcCc--------cH-HHHHHHHhcCCCce--
Confidence 46799999999999998999999996643 45677788875333444432 22 34445556566553
Q ss_pred EEEcCCchhhhHHHHhCCCeEEEEC
Q 024886 220 VHIGDDEKADKQGANSLGIDCWLWG 244 (261)
Q Consensus 220 l~iGD~~~~Di~~a~~~G~~~i~v~ 244 (261)
++|.|+-..|.....-..-.++.++
T Consensus 92 l~v~d~a~~dF~gidTs~pn~VVig 116 (262)
T KOG3040|consen 92 LIVDDDALEDFDGIDTSDPNCVVIG 116 (262)
T ss_pred EEEcccchhhCCCccCCCCCeEEEe
Confidence 5555554555554444433344443
No 229
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=90.44 E-value=0.049 Score=43.92 Aligned_cols=104 Identities=10% Similarity=0.031 Sum_probs=63.6
Q ss_pred eeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCc-ccccceEE-----ecCCCCCCCCCHHHHHHHHHHcCCC
Q 024886 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNV-IDLFDAVV-----ISSEVGCEKPDPRIFKAALDQMSVE 215 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl-~~~f~~i~-----~~~~~~~~Kp~~~~~~~~~~~l~~~ 215 (261)
+.-+|++.++|+...+. +.+.+.|++... ...++..+.- ...+...+ .....+..|. +..+|-+
T Consensus 130 V~kRP~vdeFL~~~s~~-~e~v~FTAs~~~Ya~~v~D~LD~~~~i~~~RlyR~~C~~~~g~yvKd--------ls~~~~d 200 (262)
T KOG1605|consen 130 VRKRPHVDEFLSRVSKW-YELVLFTASLEVYADPLLDILDPDRKIISHRLYRDSCTLKDGNYVKD--------LSVLGRD 200 (262)
T ss_pred EEcCCCHHHHHHHhHHH-HHHHHHHhhhHHHHHHHHHHccCCCCeeeeeecccceEeECCcEEEE--------cceeccC
Confidence 35679999999998777 889999987766 5777766642 11122111 1111222222 2556678
Q ss_pred CCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCChHHHHHhh
Q 024886 216 ASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFSDVQNRI 257 (261)
Q Consensus 216 ~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~~l 257 (261)
..++++|.|+ +.-..+=-+.|++.-.|-.+.. =.||.+++
T Consensus 201 L~~viIiDNs-P~sy~~~p~NgIpI~sw~~d~~-D~eLL~Ll 240 (262)
T KOG1605|consen 201 LSKVIIVDNS-PQSYRLQPENGIPIKSWFDDPT-DTELLKLL 240 (262)
T ss_pred cccEEEEcCC-hHHhccCccCCCcccccccCCC-hHHHHHHH
Confidence 8999999776 6777777777877543333322 24454443
No 230
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=90.39 E-value=0.17 Score=43.42 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=27.6
Q ss_pred cccEEEEccCCccccccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 024886 49 AYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAF 96 (261)
Q Consensus 49 ~~k~iifD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 96 (261)
..+.|++||||||..++ ++-++..-.|-+++..-+...|....
T Consensus 374 n~kiVVsDiDGTITkSD-----~~Ghv~~miGkdwth~gVAkLYtdI~ 416 (580)
T COG5083 374 NKKIVVSDIDGTITKSD-----ALGHVKQMIGKDWTHNGVAKLYTDID 416 (580)
T ss_pred CCcEEEEecCCcEEehh-----hHHHHHHHhccchhhcchhhhhhhhc
Confidence 46789999999999875 45555555565555444444444433
No 231
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=90.33 E-value=0.6 Score=38.15 Aligned_cols=43 Identities=23% Similarity=0.247 Sum_probs=35.9
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCccccc
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLF 186 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f 186 (261)
.+.+++.++++.|+++|++++++|+.+.. +...++.+|+..++
T Consensus 21 ~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~~~~ 64 (273)
T PRK00192 21 YSYEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGLEDPF 64 (273)
T ss_pred cCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCCCE
Confidence 44567889999999999999999998876 78889999876443
No 232
>PLN03190 aminophospholipid translocase; Provisional
Probab=89.68 E-value=0.81 Score=45.31 Aligned_cols=35 Identities=26% Similarity=0.280 Sum_probs=28.5
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHH
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLK 178 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~ 178 (261)
++.+|+.++++.|++.|++++++|+.... ...+-.
T Consensus 726 ~lr~~v~~~I~~l~~agi~v~mlTGD~~~tAi~IA~ 761 (1178)
T PLN03190 726 KLQQGVPEAIESLRTAGIKVWVLTGDKQETAISIGY 761 (1178)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHH
Confidence 57899999999999999999999996654 444433
No 233
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=89.28 E-value=10 Score=30.55 Aligned_cols=101 Identities=17% Similarity=0.171 Sum_probs=71.2
Q ss_pred eeeCccHHHHH---HHHHHCCCeEEEEeCCchHHHHHHHhcCcccc--cceEEecCCCCCCCCCHHHHHHHHHHcCCCCC
Q 024886 143 WHLPHGAYQSI---LLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDL--FDAVVISSEVGCEKPDPRIFKAALDQMSVEAS 217 (261)
Q Consensus 143 ~~~~~g~~~~l---~~L~~~g~~i~i~T~~~~~~~~~l~~~gl~~~--f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~ 217 (261)
..++|+..+++ +.|-+.|+.+.-+++.+..+-..|+..|-... ...-++ .+.+-.++..++.+++...++.
T Consensus 117 ~~LlPD~~etl~Aae~Lv~eGF~VlPY~~~D~v~a~rLed~Gc~aVMPlgsPIG---Sg~Gl~n~~~l~~i~e~~~vpV- 192 (267)
T CHL00162 117 KYLLPDPIGTLKAAEFLVKKGFTVLPYINADPMLAKHLEDIGCATVMPLGSPIG---SGQGLQNLLNLQIIIENAKIPV- 192 (267)
T ss_pred cccCCChHHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHcCCeEEeeccCccc---CCCCCCCHHHHHHHHHcCCCcE-
Confidence 35678777666 56678899999999988887778888874211 112222 3345668889999999877641
Q ss_pred cEEEEcCCchhhhHHHHhCCCeEEEECCCCC
Q 024886 218 RTVHIGDDEKADKQGANSLGIDCWLWGIDVK 248 (261)
Q Consensus 218 ~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~ 248 (261)
++--|=...+|+..|-+.|...+++++++-
T Consensus 193 -ivdAGIgt~sDa~~AmElGaDgVL~nSaIa 222 (267)
T CHL00162 193 -IIDAGIGTPSEASQAMELGASGVLLNTAVA 222 (267)
T ss_pred -EEeCCcCCHHHHHHHHHcCCCEEeecceee
Confidence 222222347999999999999999988843
No 234
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=88.89 E-value=8.7 Score=31.03 Aligned_cols=114 Identities=18% Similarity=0.236 Sum_probs=67.2
Q ss_pred eeeCccHHHHHHHHHHCCCeEEEEeCCchHHHHHHH-hcCcccccceEEecCCCCCCCC-----------CHHHHHHHHH
Q 024886 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTRLRKLLK-DLNVIDLFDAVVISSEVGCEKP-----------DPRIFKAALD 210 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~~~~~l~-~~gl~~~f~~i~~~~~~~~~Kp-----------~~~~~~~~~~ 210 (261)
+....+..++.+.+.+.+..-.++|-+.+.+..+.. ...-...+-.+.-..+...+-| +.+.=.++++
T Consensus 112 ~~~v~~~~eA~~~l~~~~~~~iflttGsk~L~~f~~~~~~~~r~~~RvLp~~~~~~g~~~~~iia~~GPfs~e~n~al~~ 191 (249)
T PF02571_consen 112 WHYVDSYEEAAELLKELGGGRIFLTTGSKNLPPFVPAPLPGERLFARVLPTPESALGFPPKNIIAMQGPFSKELNRALFR 191 (249)
T ss_pred EEEeCCHHHHHHHHhhcCCCCEEEeCchhhHHHHhhcccCCCEEEEEECCCccccCCCChhhEEEEeCCCCHHHHHHHHH
Confidence 677788999999998777344444444655555543 2211122222222222111111 2234567888
Q ss_pred HcCCCCCcEEEEcCC----chhhhHHHHhCCCeEEEECCC--------CCChHHHHHhhhc
Q 024886 211 QMSVEASRTVHIGDD----EKADKQGANSLGIDCWLWGID--------VKTFSDVQNRILI 259 (261)
Q Consensus 211 ~l~~~~~~~l~iGD~----~~~Di~~a~~~G~~~i~v~~~--------~~~~~el~~~l~~ 259 (261)
+++++ +++-=|| ...=+++|++.|++.+.+.++ +.+++++.++|.+
T Consensus 192 ~~~i~---~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~~~~~~~~~~~~~e~l~~l~~ 249 (249)
T PF02571_consen 192 QYGID---VLVTKESGGSGFDEKIEAARELGIPVIVIKRPPEPYGDPVVETIEELLDWLEQ 249 (249)
T ss_pred HcCCC---EEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCHHHHHHHHhC
Confidence 88875 4444333 234588999999999999877 3677788777653
No 235
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=88.55 E-value=2 Score=39.22 Aligned_cols=56 Identities=13% Similarity=-0.000 Sum_probs=42.6
Q ss_pred eeeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCc-cccc-ceEEecCCCCCCC
Q 024886 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNV-IDLF-DAVVISSEVGCEK 199 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl-~~~f-~~i~~~~~~~~~K 199 (261)
+++.|++.++|+.+.+. +.++|.|-+.+. +..+.+.+.- ..+| +.|++.++.+..|
T Consensus 200 vKlRP~~~efL~~~skl-femhVyTmg~R~YA~~i~~liDP~~~lF~dRIisrde~~~~k 258 (635)
T KOG0323|consen 200 VKLRPFVHEFLKEANKL-FEMHVYTMGTRDYALEIAKLIDPEGKYFGDRIISRDESPFFK 258 (635)
T ss_pred EEeCccHHHHHHHHHhh-ceeEEEeccchHHHHHHHHHhCCCCccccceEEEecCCCccc
Confidence 58899999999999987 999999998877 6777776642 2455 6777777744333
No 236
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=88.53 E-value=1 Score=35.71 Aligned_cols=39 Identities=26% Similarity=0.262 Sum_probs=33.4
Q ss_pred CccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCccc
Q 024886 146 PHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVID 184 (261)
Q Consensus 146 ~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~ 184 (261)
.++..++++.|+++|+++.++|+.+.. +..+++.+|+..
T Consensus 17 ~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~~ 56 (225)
T TIGR02461 17 PGPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGVEP 56 (225)
T ss_pred chHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCC
Confidence 456889999999999999999998866 788899999753
No 237
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=88.30 E-value=0.51 Score=37.67 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHcCCC---CCcEEEEcCCchhhhHHHHhCCCe-----EEEECCC
Q 024886 201 DPRIFKAALDQMSVE---ASRTVHIGDDEKADKQGANSLGID-----CWLWGID 246 (261)
Q Consensus 201 ~~~~~~~~~~~l~~~---~~~~l~iGD~~~~Di~~a~~~G~~-----~i~v~~~ 246 (261)
|..+.+.+++.++.. +.-++++||+ ..|-.+.+.+.-. .+.|+..
T Consensus 166 KG~av~~ll~~~~~~~~~~~~~l~~GDD-~tDE~~f~~~~~~~~~~~~i~V~~~ 218 (235)
T PF02358_consen 166 KGSAVRRLLEELPFAGPKPDFVLYIGDD-RTDEDAFRALRELEEGGFGIKVGSV 218 (235)
T ss_dssp HHHHHHHHHTTS---------EEEEESS-HHHHHHHHTTTTS----EEEEES--
T ss_pred hHHHHHHHHHhcCccccccceeEEecCC-CCCHHHHHHHHhcccCCCCeEEEee
Confidence 445567777777665 6789999999 7898888876432 4556554
No 238
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=88.15 E-value=3.8 Score=32.40 Aligned_cols=98 Identities=16% Similarity=0.236 Sum_probs=56.5
Q ss_pred CccHHHHHHHHHHCCCeEEEEeCCchHH---HHHHHhcCcccccceEEecCCCCCCCCCHHHHH---HHHHHc---CCCC
Q 024886 146 PHGAYQSILLLKDAGVKVAVVSNFDTRL---RKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFK---AALDQM---SVEA 216 (261)
Q Consensus 146 ~~g~~~~l~~L~~~g~~i~i~T~~~~~~---~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~---~~~~~l---~~~~ 216 (261)
.+...++++.+|+.|.+.+++-|....+ ..++..... +-........+..+--+..++ .+.+.. |.+
T Consensus 92 ~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~---vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~- 167 (220)
T PRK08883 92 SEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDL---ILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRD- 167 (220)
T ss_pred cccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCe---EEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCC-
Confidence 3457789999999999999999866544 444443322 211111122222222333333 322222 211
Q ss_pred CcEEEEcCCchhhhHHHHhCCCeEEEECCCC
Q 024886 217 SRTVHIGDDEKADKQGANSLGIDCWLWGIDV 247 (261)
Q Consensus 217 ~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~ 247 (261)
-.+.+.|-=...++....++|...+.+++..
T Consensus 168 ~~I~vdGGI~~eni~~l~~aGAd~vVvGSaI 198 (220)
T PRK08883 168 IRLEIDGGVKVDNIREIAEAGADMFVAGSAI 198 (220)
T ss_pred eeEEEECCCCHHHHHHHHHcCCCEEEEeHHH
Confidence 2245566544678889999999998887773
No 239
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=87.82 E-value=0.81 Score=43.46 Aligned_cols=36 Identities=19% Similarity=0.143 Sum_probs=24.9
Q ss_pred eeCccHHHHHHHHHHC-CCeEEEEeCCchH-HHHHHHh
Q 024886 144 HLPHGAYQSILLLKDA-GVKVAVVSNFDTR-LRKLLKD 179 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~-g~~i~i~T~~~~~-~~~~l~~ 179 (261)
.+.|++.++|+.|.+. +..++|+|+.+.. ++.++..
T Consensus 532 ~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L~~~~~~ 569 (797)
T PLN03063 532 GLHPELKETLKALCSDPKTTVVVLSRSGKDILDKNFGE 569 (797)
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHhCC
Confidence 4456777788888654 5678888887766 6666654
No 240
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=87.44 E-value=13 Score=29.74 Aligned_cols=99 Identities=18% Similarity=0.179 Sum_probs=67.4
Q ss_pred eeeCccHHHHHHHHHHC---CCeEEEEeCCchHHHHHHHhcCccccc--ceEEecCCCCCCCCCHHHHHHHHHHcCCCCC
Q 024886 143 WHLPHGAYQSILLLKDA---GVKVAVVSNFDTRLRKLLKDLNVIDLF--DAVVISSEVGCEKPDPRIFKAALDQMSVEAS 217 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~---g~~i~i~T~~~~~~~~~l~~~gl~~~f--~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~ 217 (261)
..++|+..++++..+.. |+.+.-+++.+...-..+..+|-.... ...+++. .+..+++.++.+.+..+++
T Consensus 103 ~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmPlg~pIGsg---~Gi~~~~~I~~I~e~~~vp-- 177 (248)
T cd04728 103 KTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSG---QGLLNPYNLRIIIERADVP-- 177 (248)
T ss_pred cccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCC---CCCCCHHHHHHHHHhCCCc--
Confidence 36788888888777665 999996666666655566666643221 1333333 3444588899888875543
Q ss_pred cEEEEc---CCchhhhHHHHhCCCeEEEECCCCCC
Q 024886 218 RTVHIG---DDEKADKQGANSLGIDCWLWGIDVKT 249 (261)
Q Consensus 218 ~~l~iG---D~~~~Di~~a~~~G~~~i~v~~~~~~ 249 (261)
++++ .+ +.|+..|-+.|...+++++++..
T Consensus 178 --VI~egGI~t-peda~~AmelGAdgVlV~SAIt~ 209 (248)
T cd04728 178 --VIVDAGIGT-PSDAAQAMELGADAVLLNTAIAK 209 (248)
T ss_pred --EEEeCCCCC-HHHHHHHHHcCCCEEEEChHhcC
Confidence 4443 23 79999999999999999998665
No 241
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=87.38 E-value=1.5 Score=42.13 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=29.7
Q ss_pred eeCccHHHHHHHHHHC-CCeEEEEeCCchH-HHHHHHhcC
Q 024886 144 HLPHGAYQSILLLKDA-GVKVAVVSNFDTR-LRKLLKDLN 181 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~-g~~i~i~T~~~~~-~~~~l~~~g 181 (261)
.+.|++.++|+.|.+. +..++|+|+.+.. ++.++...+
T Consensus 622 ~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~fg~~~ 661 (934)
T PLN03064 622 RLHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENFGEFD 661 (934)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhCCCC
Confidence 5667888999999765 6789999998877 777776543
No 242
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=87.20 E-value=1.2 Score=34.90 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=34.2
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcc
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVI 183 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~ 183 (261)
.+.|...+.++.|++.|++++++|+.+.. +..+.+.+++.
T Consensus 18 ~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~ 58 (215)
T TIGR01487 18 MISERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTS 58 (215)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCC
Confidence 56678889999999999999999998866 77788888765
No 243
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=86.69 E-value=1.3 Score=34.78 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=32.2
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcc
Q 024886 147 HGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVI 183 (261)
Q Consensus 147 ~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~ 183 (261)
+..+++|+.|++.|++++++|+.+.. +..+++.+++.
T Consensus 19 ~~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 19 QPAAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred HHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 34678999999999999999999877 78899999875
No 244
>PLN02334 ribulose-phosphate 3-epimerase
Probab=86.66 E-value=12 Score=29.74 Aligned_cols=97 Identities=20% Similarity=0.131 Sum_probs=54.4
Q ss_pred cHHHHHHHHHHCCCeEEEEeCCc--hH-HHHHHHhcCcccccceEEecCCCCCCC--CCHHHHHHHHHHcCC-CCCcEEE
Q 024886 148 GAYQSILLLKDAGVKVAVVSNFD--TR-LRKLLKDLNVIDLFDAVVISSEVGCEK--PDPRIFKAALDQMSV-EASRTVH 221 (261)
Q Consensus 148 g~~~~l~~L~~~g~~i~i~T~~~--~~-~~~~l~~~gl~~~f~~i~~~~~~~~~K--p~~~~~~~~~~~l~~-~~~~~l~ 221 (261)
...+.++.+++.|..+++..+.. .+ ++.++...|. +|+-. .+-..+.+| ..+..++.+.+--.. ..-.+++
T Consensus 103 ~~~~~~~~i~~~g~~iGls~~~~t~~~~~~~~~~~~~~-Dyi~~--~~v~pg~~~~~~~~~~~~~i~~~~~~~~~~~I~a 179 (229)
T PLN02334 103 HLHRLIQQIKSAGMKAGVVLNPGTPVEAVEPVVEKGLV-DMVLV--MSVEPGFGGQSFIPSMMDKVRALRKKYPELDIEV 179 (229)
T ss_pred hHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhccCC-CEEEE--EEEecCCCccccCHHHHHHHHHHHHhCCCCcEEE
Confidence 34678888899999999999742 33 3333333112 22211 111111222 233344444332221 1124667
Q ss_pred EcCCchhhhHHHHhCCCeEEEECCCC
Q 024886 222 IGDDEKADKQGANSLGIDCWLWGIDV 247 (261)
Q Consensus 222 iGD~~~~Di~~a~~~G~~~i~v~~~~ 247 (261)
+|-=...++....++|...+.+++..
T Consensus 180 ~GGI~~e~i~~l~~aGad~vvvgsai 205 (229)
T PLN02334 180 DGGVGPSTIDKAAEAGANVIVAGSAV 205 (229)
T ss_pred eCCCCHHHHHHHHHcCCCEEEEChHH
Confidence 75444899999999999999888774
No 245
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=86.53 E-value=1.4 Score=34.71 Aligned_cols=41 Identities=17% Similarity=0.104 Sum_probs=34.3
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCccc
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVID 184 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~ 184 (261)
.+.|...+.|+.|++.|++++++|+.+.. +..+++.+++..
T Consensus 20 ~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~ 61 (230)
T PRK01158 20 RLSLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTSG 61 (230)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCC
Confidence 45567889999999999999999998876 677888888753
No 246
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=86.15 E-value=0.65 Score=37.31 Aligned_cols=15 Identities=33% Similarity=0.494 Sum_probs=12.8
Q ss_pred ccEEEEccCCccccc
Q 024886 50 YDAVLLDAGGTLLQL 64 (261)
Q Consensus 50 ~k~iifD~DGTL~d~ 64 (261)
..+++||+||||.+.
T Consensus 3 ~~~l~lD~DGTL~~~ 17 (244)
T TIGR00685 3 KRAFFFDYDGTLSEI 17 (244)
T ss_pred cEEEEEecCccccCC
Confidence 468999999999874
No 247
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=85.86 E-value=2.2 Score=34.42 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=32.2
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcc
Q 024886 147 HGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVI 183 (261)
Q Consensus 147 ~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~ 183 (261)
+...++++.|+++|++++++|+.+.. +..+++.+|+.
T Consensus 19 ~~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~~ 56 (256)
T TIGR01486 19 GPAKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGLE 56 (256)
T ss_pred hHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 45788999999999999999998876 78899999875
No 248
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=85.59 E-value=1.6 Score=35.56 Aligned_cols=41 Identities=12% Similarity=0.277 Sum_probs=35.0
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCccc
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVID 184 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~ 184 (261)
.+.+..++.++.|+++|++++++|+.+.. +..+++.+++..
T Consensus 19 ~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~ 60 (272)
T PRK15126 19 HLGEKTLSTLARLRERDITLTFATGRHVLEMQHILGALSLDA 60 (272)
T ss_pred cCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCC
Confidence 45667889999999999999999998876 788889988753
No 249
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=85.51 E-value=15 Score=29.32 Aligned_cols=100 Identities=21% Similarity=0.232 Sum_probs=61.6
Q ss_pred eeCccHHHHH---HHHHHCCCeEEEEeCCchHHHHHHHhcCcccccceEEecC-CCCCCCCCHHHHHHHHHHcCCCCCcE
Q 024886 144 HLPHGAYQSI---LLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISS-EVGCEKPDPRIFKAALDQMSVEASRT 219 (261)
Q Consensus 144 ~~~~g~~~~l---~~L~~~g~~i~i~T~~~~~~~~~l~~~gl~~~f~~i~~~~-~~~~~Kp~~~~~~~~~~~l~~~~~~~ 219 (261)
.++|+..+++ +.|-+.|+.+.-+++.+..+-+.|+..|-.... -.++. ..+.+--++..++.++++.+++. +
T Consensus 104 ~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~d~GcaavM--PlgsPIGSg~Gi~n~~~l~~i~~~~~vPv--I 179 (247)
T PF05690_consen 104 TLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEDAGCAAVM--PLGSPIGSGRGIQNPYNLRIIIERADVPV--I 179 (247)
T ss_dssp T--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT-SEBE--EBSSSTTT---SSTHHHHHHHHHHGSSSB--E
T ss_pred CcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHCCCCEEE--ecccccccCcCCCCHHHHHHHHHhcCCcE--E
Confidence 5677776665 667789999999999888877788888743111 11111 23345668889999999998752 2
Q ss_pred EEEcCCchhhhHHHHhCCCeEEEECCCC
Q 024886 220 VHIGDDEKADKQGANSLGIDCWLWGIDV 247 (261)
Q Consensus 220 l~iGD~~~~Di~~a~~~G~~~i~v~~~~ 247 (261)
+=-|=..++|...|-+.|+..+++++.+
T Consensus 180 vDAGiG~pSdaa~AMElG~daVLvNTAi 207 (247)
T PF05690_consen 180 VDAGIGTPSDAAQAMELGADAVLVNTAI 207 (247)
T ss_dssp EES---SHHHHHHHHHTT-SEEEESHHH
T ss_pred EeCCCCCHHHHHHHHHcCCceeehhhHH
Confidence 2112223799999999999999998763
No 250
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=85.50 E-value=1.9 Score=34.81 Aligned_cols=40 Identities=18% Similarity=0.414 Sum_probs=34.1
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcc
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVI 183 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~ 183 (261)
.+.+...++++.|+++|++++++|+.+.. +...++.+++.
T Consensus 16 ~i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~ 56 (256)
T TIGR00099 16 TISPSTKEALAKLREKGIKVVLATGRPYKEVKNILKELGLD 56 (256)
T ss_pred ccCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 45567889999999999999999998866 78888888875
No 251
>PRK08005 epimerase; Validated
Probab=84.87 E-value=17 Score=28.52 Aligned_cols=101 Identities=9% Similarity=-0.011 Sum_probs=57.4
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEE-cCC
Q 024886 147 HGAYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHI-GDD 225 (261)
Q Consensus 147 ~g~~~~l~~L~~~g~~i~i~T~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~i-GD~ 225 (261)
+...++++.+|+.|.+.+++-|....+..+...+...+++-......+.+..|=.+..++++.+.-...++.-+-| |-=
T Consensus 93 ~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~~~I~VDGGI 172 (210)
T PRK08005 93 QNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPAAECWADGGI 172 (210)
T ss_pred cCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEEecCCCccceecHHHHHHHHHHHHhcccCCEEEECCC
Confidence 4567899999999999999998665554443333322222222222223333334555666555333322212455 222
Q ss_pred chhhhHHHHhCCCeEEEECCCC
Q 024886 226 EKADKQGANSLGIDCWLWGIDV 247 (261)
Q Consensus 226 ~~~Di~~a~~~G~~~i~v~~~~ 247 (261)
....+....++|...+.+++..
T Consensus 173 ~~~~i~~l~~aGad~~V~Gsai 194 (210)
T PRK08005 173 TLRAARLLAAAGAQHLVIGRAL 194 (210)
T ss_pred CHHHHHHHHHCCCCEEEEChHh
Confidence 2456667788999988887764
No 252
>PRK10976 putative hydrolase; Provisional
Probab=84.38 E-value=2 Score=34.87 Aligned_cols=41 Identities=15% Similarity=0.245 Sum_probs=34.4
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCccc
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVID 184 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~ 184 (261)
.+.+...+.++.++++|++++++|+.+.. +..+++.+++..
T Consensus 19 ~is~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~ 60 (266)
T PRK10976 19 TLSPYAKETLKLLTARGIHFVFATGRHHVDVGQIRDNLEIKS 60 (266)
T ss_pred cCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCCC
Confidence 45567889999999999999999998866 778888888753
No 253
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=84.13 E-value=23 Score=29.72 Aligned_cols=100 Identities=20% Similarity=0.174 Sum_probs=68.4
Q ss_pred eeeCccHHHHHHHHHHC---CCeEEEEeCCchHHHHHHHhcCcc---cccceEEecCCCCCCCCCHHHHHHHHHHcCCCC
Q 024886 143 WHLPHGAYQSILLLKDA---GVKVAVVSNFDTRLRKLLKDLNVI---DLFDAVVISSEVGCEKPDPRIFKAALDQMSVEA 216 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~---g~~i~i~T~~~~~~~~~l~~~gl~---~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~ 216 (261)
..++|+..++++..+.. |+.+.++++.+...-+.+..+|-. ++ ...++ .+.+-.+|+.++.+.+...++
T Consensus 177 ~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~~avmPl-~~pIG---sg~gv~~p~~i~~~~e~~~vp- 251 (326)
T PRK11840 177 KTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGAVAVMPL-GAPIG---SGLGIQNPYTIRLIVEGATVP- 251 (326)
T ss_pred CCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCCEEEeec-ccccc---CCCCCCCHHHHHHHHHcCCCc-
Confidence 35678888888777666 999988887777655566666631 11 22333 223344888999999986543
Q ss_pred CcEEEEc--CCchhhhHHHHhCCCeEEEECCCCCCh
Q 024886 217 SRTVHIG--DDEKADKQGANSLGIDCWLWGIDVKTF 250 (261)
Q Consensus 217 ~~~l~iG--D~~~~Di~~a~~~G~~~i~v~~~~~~~ 250 (261)
+++| =+...|+..|-+.|...+++++++...
T Consensus 252 ---VivdAGIg~~sda~~AmelGadgVL~nSaIa~a 284 (326)
T PRK11840 252 ---VLVDAGVGTASDAAVAMELGCDGVLMNTAIAEA 284 (326)
T ss_pred ---EEEeCCCCCHHHHHHHHHcCCCEEEEcceeccC
Confidence 4442 223799999999999999999885433
No 254
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=83.90 E-value=2.2 Score=33.51 Aligned_cols=40 Identities=20% Similarity=0.266 Sum_probs=33.0
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcc
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVI 183 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~ 183 (261)
.+.+...++|+.|++.|++++++|+.+.. +..+++.+|+.
T Consensus 15 ~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~~ 55 (225)
T TIGR01482 15 AINESALEAIRKAESVGIPVVLVTGNSVQFARALAKLIGTP 55 (225)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCC
Confidence 45567788999999999999999998876 77788888854
No 255
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=83.82 E-value=2.3 Score=34.48 Aligned_cols=40 Identities=15% Similarity=0.256 Sum_probs=34.1
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcc
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVI 183 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~ 183 (261)
.+.|...+.++.++++|++++++|+.+.. +..+++.+++.
T Consensus 20 ~i~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (272)
T PRK10530 20 TILPESLEALARAREAGYKVIIVTGRHHVAIHPFYQALALD 60 (272)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCC
Confidence 45667789999999999999999998866 78888888875
No 256
>PRK00208 thiG thiazole synthase; Reviewed
Probab=83.73 E-value=21 Score=28.69 Aligned_cols=99 Identities=19% Similarity=0.187 Sum_probs=65.6
Q ss_pred eeCccHHHHHHHHHHC---CCeEEEEeCCchHHHHHHHhcCccccc--ceEEecCCCCCCCCCHHHHHHHHHHcCCCCCc
Q 024886 144 HLPHGAYQSILLLKDA---GVKVAVVSNFDTRLRKLLKDLNVIDLF--DAVVISSEVGCEKPDPRIFKAALDQMSVEASR 218 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~---g~~i~i~T~~~~~~~~~l~~~gl~~~f--~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~ 218 (261)
.++|+..++++..+.. |+.+.-+++.+...-+.+..+|-.-.. ...+++. .+..+++.++.+.+..+++
T Consensus 104 ~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmPlg~pIGsg---~gi~~~~~i~~i~e~~~vp--- 177 (250)
T PRK00208 104 TLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVMPLGAPIGSG---LGLLNPYNLRIIIEQADVP--- 177 (250)
T ss_pred CCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCC---CCCCCHHHHHHHHHhcCCe---
Confidence 5678888887766665 999995666566555556666643221 1333333 2344577888888875543
Q ss_pred EEEEcC--CchhhhHHHHhCCCeEEEECCCCCC
Q 024886 219 TVHIGD--DEKADKQGANSLGIDCWLWGIDVKT 249 (261)
Q Consensus 219 ~l~iGD--~~~~Di~~a~~~G~~~i~v~~~~~~ 249 (261)
++++- +.+.|+..|-+.|...+++++++..
T Consensus 178 -VIveaGI~tpeda~~AmelGAdgVlV~SAItk 209 (250)
T PRK00208 178 -VIVDAGIGTPSDAAQAMELGADAVLLNTAIAV 209 (250)
T ss_pred -EEEeCCCCCHHHHHHHHHcCCCEEEEChHhhC
Confidence 44432 1279999999999999999998665
No 257
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=83.04 E-value=5.7 Score=33.03 Aligned_cols=85 Identities=19% Similarity=0.204 Sum_probs=59.6
Q ss_pred eeCccHHHHHHHHHHC----CCeEEEEeCCch--H---HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCC
Q 024886 144 HLPHGAYQSILLLKDA----GVKVAVVSNFDT--R---LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSV 214 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~----g~~i~i~T~~~~--~---~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~ 214 (261)
.+.|++.++|+.|.++ .++...+||+.. + .+.+-..+|..---|.++.+.. .|..+. + .
T Consensus 51 ~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~lS~~Lgv~Vs~dqviqSHs---------P~r~l~-~--~ 118 (389)
T KOG1618|consen 51 RPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQELSALLGVEVSADQVIQSHS---------PFRLLV-E--Y 118 (389)
T ss_pred CCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHHHHhhCCccCHHHHHhhcC---------hHHHHh-h--h
Confidence 7889999999999887 689999999642 1 3455556676544455555443 344454 2 2
Q ss_pred CCCcEEEEcCCchhhhHHHHhCCCeEEE
Q 024886 215 EASRTVHIGDDEKADKQGANSLGIDCWL 242 (261)
Q Consensus 215 ~~~~~l~iGD~~~~Di~~a~~~G~~~i~ 242 (261)
.-+.++++|+. +--+.|+..|++.+.
T Consensus 119 ~~k~vLv~G~~--~vr~vAegyGFk~Vv 144 (389)
T KOG1618|consen 119 HYKRVLVVGQG--SVREVAEGYGFKNVV 144 (389)
T ss_pred hhceEEEecCC--cHHHHhhccCcccee
Confidence 35789999975 667789999998753
No 258
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=83.02 E-value=3.2 Score=33.81 Aligned_cols=38 Identities=21% Similarity=0.148 Sum_probs=32.6
Q ss_pred CccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcc
Q 024886 146 PHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVI 183 (261)
Q Consensus 146 ~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~ 183 (261)
.+..++.++.|+++|++++++|+.+.. +..+++.+|+.
T Consensus 26 ~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~~ 64 (271)
T PRK03669 26 WQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTLGLQ 64 (271)
T ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhCCC
Confidence 355778899999999999999998876 78899999874
No 259
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=82.88 E-value=2.6 Score=34.76 Aligned_cols=41 Identities=17% Similarity=0.163 Sum_probs=34.4
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCccc
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVID 184 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~ 184 (261)
..++.+.+.|+.|+++|++++++|+.... +..+.+.+++..
T Consensus 18 ~~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~~ 59 (302)
T PRK12702 18 NSYGAARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLEH 59 (302)
T ss_pred cCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCC
Confidence 34556789999999999999999998866 788889998764
No 260
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=82.42 E-value=2.6 Score=34.14 Aligned_cols=41 Identities=17% Similarity=0.310 Sum_probs=35.3
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCccc
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVID 184 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~ 184 (261)
.+.+..+++|+.++++|++++++|+++.. +..+++.+++..
T Consensus 20 ~i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~~ 61 (264)
T COG0561 20 TISPETKEALARLREKGVKVVLATGRPLPDVLSILEELGLDG 61 (264)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCc
Confidence 35567889999999999999999998866 899999999864
No 261
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=82.37 E-value=20 Score=28.46 Aligned_cols=103 Identities=19% Similarity=0.219 Sum_probs=72.4
Q ss_pred eeeCccHHHHH---HHHHHCCCeEEEEeCCchHHHHHHHhcCccccc--ceEEecCCCCCCCCCHHHHHHHHHHcCCCCC
Q 024886 143 WHLPHGAYQSI---LLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLF--DAVVISSEVGCEKPDPRIFKAALDQMSVEAS 217 (261)
Q Consensus 143 ~~~~~g~~~~l---~~L~~~g~~i~i~T~~~~~~~~~l~~~gl~~~f--~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~ 217 (261)
..+.|+..+++ +.|-+.|+.+..+++.+..+-+.|+..|-.... ..-++ .+.+--++..++.++++..++
T Consensus 110 ~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~arrLee~GcaavMPl~aPIG---Sg~G~~n~~~l~iiie~a~VP-- 184 (262)
T COG2022 110 KTLLPDPIETLKAAEQLVKEGFVVLPYTTDDPVLARRLEEAGCAAVMPLGAPIG---SGLGLQNPYNLEIIIEEADVP-- 184 (262)
T ss_pred cccCCChHHHHHHHHHHHhCCCEEeeccCCCHHHHHHHHhcCceEecccccccc---CCcCcCCHHHHHHHHHhCCCC--
Confidence 36788877766 566778999999999888777777777732111 12222 234556888999999999875
Q ss_pred cEEEE--cCCchhhhHHHHhCCCeEEEECCCCCChHH
Q 024886 218 RTVHI--GDDEKADKQGANSLGIDCWLWGIDVKTFSD 252 (261)
Q Consensus 218 ~~l~i--GD~~~~Di~~a~~~G~~~i~v~~~~~~~~e 252 (261)
++| |=..++|...|-+.|+..+++++.+....+
T Consensus 185 --viVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A~D 219 (262)
T COG2022 185 --VIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKD 219 (262)
T ss_pred --EEEeCCCCChhHHHHHHhcccceeehhhHhhccCC
Confidence 333 222378999999999999999887554443
No 262
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=81.47 E-value=1.8 Score=36.75 Aligned_cols=46 Identities=20% Similarity=0.107 Sum_probs=32.6
Q ss_pred HHHHHHHHHc----CCCCCcEEEEcCCch----hhhHHHHhCCCeEEEECCCCCCh
Q 024886 203 RIFKAALDQM----SVEASRTVHIGDDEK----ADKQGANSLGIDCWLWGIDVKTF 250 (261)
Q Consensus 203 ~~~~~~~~~l----~~~~~~~l~iGD~~~----~Di~~a~~~G~~~i~v~~~~~~~ 250 (261)
-....+.+-+ ++.++++++|||.+. ||. .|+.+| .++|+.++.++.
T Consensus 352 ~GV~~lQ~y~~~~~~i~~~~tLHVGDQF~s~GaNDf-kaR~a~-~t~WIasP~ETv 405 (408)
T PF06437_consen 352 LGVRALQKYFDPEGGIKPSETLHVGDQFLSAGANDF-KARLAC-TTAWIASPQETV 405 (408)
T ss_pred HhHHHHHHHHHhccCCCccceeeehhhhhccCCcch-hhhhhc-eeeEecCHHHHh
Confidence 3566666666 899999999999742 665 566666 556887765543
No 263
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=80.71 E-value=17 Score=29.29 Aligned_cols=111 Identities=16% Similarity=0.191 Sum_probs=65.1
Q ss_pred eeeCccHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCcccccceEEecCCCCC-----CC----------C-CHHHHH
Q 024886 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGC-----EK----------P-DPRIFK 206 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~-----~K----------p-~~~~~~ 206 (261)
+...++..++.+.+++.|-++.+.++ .+++..+........++-.++...+... +- | ..+.=.
T Consensus 111 ~~~V~d~~ea~~~~~~~~~rVflt~G-~~~l~~f~~~~~~~~~~~Rvlp~~~~~~~~~~~~~p~~~Iia~~GPfs~~~n~ 189 (257)
T COG2099 111 WIEVADIEEAAEAAKQLGRRVFLTTG-RQNLAHFVAADAHSHVLARVLPPPDVLAKCEDLGVPPARIIAMRGPFSEEDNK 189 (257)
T ss_pred eEEecCHHHHHHHHhccCCcEEEecC-ccchHHHhcCcccceEEEEEcCchHHHHHHHhcCCChhhEEEecCCcChHHHH
Confidence 45567888999998888766666666 4444444444444334433333221110 11 1 112345
Q ss_pred HHHHHcCCCCCcEEEEcCCc-----hhhhHHHHhCCCeEEEECCC------CCChHHHHHhh
Q 024886 207 AALDQMSVEASRTVHIGDDE-----KADKQGANSLGIDCWLWGID------VKTFSDVQNRI 257 (261)
Q Consensus 207 ~~~~~l~~~~~~~l~iGD~~-----~~Di~~a~~~G~~~i~v~~~------~~~~~el~~~l 257 (261)
.++++++++ +++-=||- ..=+++|++.|+++|.+.++ ..++.++.+.+
T Consensus 190 all~q~~id---~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~Rp~~~~~~~~~v~~~~~~l 248 (257)
T COG2099 190 ALLEQYRID---VVVTKNSGGAGGTYEKIEAARELGIPVIMIERPIDYPAGFGDVTDLDAAL 248 (257)
T ss_pred HHHHHhCCC---EEEEccCCcccCcHHHHHHHHHcCCcEEEEecCCcCCcccchhhHHHHHH
Confidence 677777765 45544441 23489999999999998887 44555555554
No 264
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=79.60 E-value=53 Score=32.80 Aligned_cols=29 Identities=28% Similarity=0.405 Sum_probs=25.1
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR 172 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~ 172 (261)
++-+|+-+.++.|++.|++++++|+...+
T Consensus 651 kLQdgVPetI~~L~~AGIKIWVLTGDK~E 679 (1151)
T KOG0206|consen 651 KLQDGVPETIAKLAQAGIKIWVLTGDKQE 679 (1151)
T ss_pred hhccCchHHHHHHHHcCCEEEEEcCcHHH
Confidence 56789999999999999999999985444
No 265
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=78.08 E-value=8.9 Score=36.27 Aligned_cols=32 Identities=16% Similarity=0.091 Sum_probs=27.2
Q ss_pred CCcEEEEcCCchhhhHHHHhCCCeEEEECCCCC
Q 024886 216 ASRTVHIGDDEKADKQGANSLGIDCWLWGIDVK 248 (261)
Q Consensus 216 ~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~ 248 (261)
.--++|.||. .||+-+.+.|..+..+..++.+
T Consensus 806 Gy~TLMCGDG-TNDVGALK~AhVGVALL~~~~e 837 (1160)
T KOG0209|consen 806 GYVTLMCGDG-TNDVGALKQAHVGVALLNNPEE 837 (1160)
T ss_pred CeEEEEecCC-CcchhhhhhcccceehhcCChh
Confidence 3568999998 8999999999999888877654
No 266
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=77.95 E-value=27 Score=27.67 Aligned_cols=99 Identities=18% Similarity=0.211 Sum_probs=53.7
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHH------HcCCCCCcEE
Q 024886 147 HGAYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALD------QMSVEASRTV 220 (261)
Q Consensus 147 ~g~~~~l~~L~~~g~~i~i~T~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~------~l~~~~~~~l 220 (261)
+...++++.+|+.|.+.+++-|....+..+...+...+++-......+.+..|=.+..++.+.+ +.+. +--+
T Consensus 97 ~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~--~~~I 174 (223)
T PRK08745 97 RHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGK--PIRL 174 (223)
T ss_pred ccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCC--CeeE
Confidence 4577899999999999999999665554443333322222111111222222223333333322 2232 2224
Q ss_pred EE-cCCchhhhHHHHhCCCeEEEECCCC
Q 024886 221 HI-GDDEKADKQGANSLGIDCWLWGIDV 247 (261)
Q Consensus 221 ~i-GD~~~~Di~~a~~~G~~~i~v~~~~ 247 (261)
-| |-=....+.....+|...+.+++..
T Consensus 175 eVDGGI~~eti~~l~~aGaDi~V~GSai 202 (223)
T PRK08745 175 EIDGGVKADNIGAIAAAGADTFVAGSAI 202 (223)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEEChhh
Confidence 44 3222456667788999998888774
No 267
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=76.90 E-value=34 Score=27.22 Aligned_cols=100 Identities=17% Similarity=0.188 Sum_probs=57.1
Q ss_pred ccHHHHHHHHHHCCC--eEEEEeCCchHHHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCC----CCCcEE
Q 024886 147 HGAYQSILLLKDAGV--KVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSV----EASRTV 220 (261)
Q Consensus 147 ~g~~~~l~~L~~~g~--~i~i~T~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~----~~~~~l 220 (261)
+...++++.+++.|. +.+++-|....++.+...++..+++-......+.+..+-.+..++.+.+.-.. ..+-.+
T Consensus 103 ~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~I 182 (228)
T PRK08091 103 HDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLI 182 (228)
T ss_pred ccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceE
Confidence 457789999999999 99999986655544444443222222222223333334445555554432211 112224
Q ss_pred EEcCC--chhhhHHHHhCCCeEEEECCCC
Q 024886 221 HIGDD--EKADKQGANSLGIDCWLWGIDV 247 (261)
Q Consensus 221 ~iGD~--~~~Di~~a~~~G~~~i~v~~~~ 247 (261)
.| |. ....+.....+|...+..++..
T Consensus 183 eV-DGGI~~~ti~~l~~aGaD~~V~GSal 210 (228)
T PRK08091 183 SI-DGSMTLELASYLKQHQIDWVVSGSAL 210 (228)
T ss_pred EE-ECCCCHHHHHHHHHCCCCEEEEChhh
Confidence 45 43 2456667788999988877764
No 268
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=76.85 E-value=1.7 Score=31.95 Aligned_cols=15 Identities=27% Similarity=0.434 Sum_probs=13.4
Q ss_pred cEEEEccCCcccccc
Q 024886 51 DAVLLDAGGTLLQLA 65 (261)
Q Consensus 51 k~iifD~DGTL~d~~ 65 (261)
+++++|+||||+.+.
T Consensus 3 ~~lvldld~tl~~~~ 17 (148)
T smart00577 3 KTLVLDLDETLVHST 17 (148)
T ss_pred cEEEEeCCCCeECCC
Confidence 579999999999975
No 269
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=76.67 E-value=3.6 Score=32.64 Aligned_cols=45 Identities=24% Similarity=0.562 Sum_probs=36.7
Q ss_pred CCCCH----HHHHHHHHHcCCCC--CcEEEEcCCchhhhHHHHhCCCeEEE
Q 024886 198 EKPDP----RIFKAALDQMSVEA--SRTVHIGDDEKADKQGANSLGIDCWL 242 (261)
Q Consensus 198 ~Kp~~----~~~~~~~~~l~~~~--~~~l~iGD~~~~Di~~a~~~G~~~i~ 242 (261)
-||+| ++|..-++.+|++| .++-||.|++++---.|...||.+++
T Consensus 85 lKPsP~NiQeLYL~SL~~lGid~~~HDIRFVEDnWE~PTlGawGlGWEVWl 135 (298)
T COG0752 85 IKPSPDNIQELYLGSLEALGIDPLEHDIRFVEDNWENPTLGAWGLGWEVWL 135 (298)
T ss_pred ecCCCccHHHHHHHHHHHcCCChhhcceeeeccCCCCCcccccccceeEEE
Confidence 36666 45666788899876 78999999999999999999998854
No 270
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=75.52 E-value=16 Score=24.88 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHH
Q 024886 200 PDPRIFKAALDQMSVEASRTVHIGDDEKADKQGAN 234 (261)
Q Consensus 200 p~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~ 234 (261)
-|...++.+++.+. ..+.+.||||-+.|.+.-.
T Consensus 50 ~K~~~i~~i~~~fP--~~kfiLIGDsgq~DpeiY~ 82 (100)
T PF09949_consen 50 HKRDNIERILRDFP--ERKFILIGDSGQHDPEIYA 82 (100)
T ss_pred HHHHHHHHHHHHCC--CCcEEEEeeCCCcCHHHHH
Confidence 34556777777754 4679999999988976543
No 271
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=74.29 E-value=38 Score=27.15 Aligned_cols=96 Identities=16% Similarity=0.126 Sum_probs=52.4
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCchH---HHHHHHhcCcccccceEEecC-CCCCCCCCHHHHHHHHHHcCCCCCcEEEE
Q 024886 147 HGAYQSILLLKDAGVKVAVVSNFDTR---LRKLLKDLNVIDLFDAVVISS-EVGCEKPDPRIFKAALDQMSVEASRTVHI 222 (261)
Q Consensus 147 ~g~~~~l~~L~~~g~~i~i~T~~~~~---~~~~l~~~gl~~~f~~i~~~~-~~~~~Kp~~~~~~~~~~~l~~~~~~~l~i 222 (261)
+...++++.++++|.+.+++-+.... ++.+++... .|=.. +.. ..+. +=.+...+.+.+--...++..+.+
T Consensus 116 ~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~---~~l~m-sv~~~~g~-~~~~~~~~~i~~lr~~~~~~~i~v 190 (244)
T PRK13125 116 DDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSP---LFIYY-GLRPATGV-PLPVSVERNIKRVRNLVGNKYLVV 190 (244)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCC---CEEEE-EeCCCCCC-CchHHHHHHHHHHHHhcCCCCEEE
Confidence 46678899999999999998875443 455555432 12111 221 1121 111222222221112222233666
Q ss_pred cCC--chhhhHHHHhCCCeEEEECCCC
Q 024886 223 GDD--EKADKQGANSLGIDCWLWGIDV 247 (261)
Q Consensus 223 GD~--~~~Di~~a~~~G~~~i~v~~~~ 247 (261)
|=. ...++..+..+|...+.+++..
T Consensus 191 ~gGI~~~e~i~~~~~~gaD~vvvGSai 217 (244)
T PRK13125 191 GFGLDSPEDARDALSAGADGVVVGTAF 217 (244)
T ss_pred eCCcCCHHHHHHHHHcCCCEEEECHHH
Confidence 542 1478888888999999998763
No 272
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=73.40 E-value=2.3 Score=31.84 Aligned_cols=15 Identities=27% Similarity=0.434 Sum_probs=13.2
Q ss_pred cEEEEccCCcccccc
Q 024886 51 DAVLLDAGGTLLQLA 65 (261)
Q Consensus 51 k~iifD~DGTL~d~~ 65 (261)
+++++|+|+||+.+.
T Consensus 2 ~~lvlDLDeTLi~~~ 16 (162)
T TIGR02251 2 KTLVLDLDETLVHST 16 (162)
T ss_pred cEEEEcCCCCcCCCC
Confidence 579999999999874
No 273
>PLN02151 trehalose-phosphatase
Probab=73.12 E-value=13 Score=31.75 Aligned_cols=34 Identities=26% Similarity=0.348 Sum_probs=20.6
Q ss_pred HHHHHHhcCccccc-c-eEEecCCCCCCCCCHHHHHHHHH
Q 024886 173 LRKLLKDLNVIDLF-D-AVVISSEVGCEKPDPRIFKAALD 210 (261)
Q Consensus 173 ~~~~l~~~gl~~~f-~-~i~~~~~~~~~Kp~~~~~~~~~~ 210 (261)
++.+++.+++...- + .+|..|+ ..+-++|..+-.
T Consensus 274 v~~Ll~~~~~~~~~~~~pvyiGDD----~TDEDaF~~L~~ 309 (354)
T PLN02151 274 LEFLLESLGYANCTDVFPIYIGDD----RTDEDAFKILRD 309 (354)
T ss_pred HHHHHHhcccccCCCCeEEEEcCC----CcHHHHHHHHhh
Confidence 57788887765321 1 3555555 337778887754
No 274
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=73.04 E-value=13 Score=36.36 Aligned_cols=66 Identities=17% Similarity=0.139 Sum_probs=46.4
Q ss_pred HHHHHHhcCcccccceEEecC-----CCCCCCCCHHHHHHHHHHcCCCCCcEE-EEcCCchh-hhHHHHhCCCeEE
Q 024886 173 LRKLLKDLNVIDLFDAVVISS-----EVGCEKPDPRIFKAALDQMSVEASRTV-HIGDDEKA-DKQGANSLGIDCW 241 (261)
Q Consensus 173 ~~~~l~~~gl~~~f~~i~~~~-----~~~~~Kp~~~~~~~~~~~l~~~~~~~l-~iGD~~~~-Di~~a~~~G~~~i 241 (261)
++..|+..|+.. ..+++.. .++..-.+..++.++..+.|+++++++ ++||+ .+ |.+.....-..+|
T Consensus 926 lr~~Lr~~gLr~--~~iys~~~~~LDVlP~~ASKgqAlRyL~~rwgi~l~~v~VfaGdS-GntD~e~Ll~G~~~tv 998 (1050)
T TIGR02468 926 LRKLLRIQGLRC--HAVYCRNGTRLNVIPLLASRSQALRYLFVRWGIELANMAVFVGES-GDTDYEGLLGGLHKTV 998 (1050)
T ss_pred HHHHHHhCCCce--EEEeecCCcEeeeeeCCCCHHHHHHHHHHHcCCChHHeEEEeccC-CCCCHHHHhCCceeEE
Confidence 577788888753 2344432 244555677799999999999999994 59999 67 9876653333444
No 275
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=72.31 E-value=6.5 Score=31.41 Aligned_cols=42 Identities=19% Similarity=0.435 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHcCCCC--CcEEEEcCCchhhhHHHHhCCCeEEE
Q 024886 201 DPRIFKAALDQMSVEA--SRTVHIGDDEKADKQGANSLGIDCWL 242 (261)
Q Consensus 201 ~~~~~~~~~~~l~~~~--~~~l~iGD~~~~Di~~a~~~G~~~i~ 242 (261)
-.+.|..-++.+|++| .++-||.|++++---+|...||.+++
T Consensus 87 iQelYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGLGWEVWl 130 (279)
T cd00733 87 IQELYLESLEALGINPKEHDIRFVEDNWESPTLGAWGLGWEVWL 130 (279)
T ss_pred HHHHHHHHHHHhCCCccccCeeEeecCCCCCcccccccccEEEE
Confidence 3466778889999875 78999999999999999999999853
No 276
>PLN03017 trehalose-phosphatase
Probab=72.13 E-value=18 Score=30.94 Aligned_cols=45 Identities=22% Similarity=0.240 Sum_probs=26.1
Q ss_pred HHHHHHhcCcccc-cc-eEEecCCCCCCCCCHHHHHHHHHH-cCCCCCcEEEEcCC
Q 024886 173 LRKLLKDLNVIDL-FD-AVVISSEVGCEKPDPRIFKAALDQ-MSVEASRTVHIGDD 225 (261)
Q Consensus 173 ~~~~l~~~gl~~~-f~-~i~~~~~~~~~Kp~~~~~~~~~~~-l~~~~~~~l~iGD~ 225 (261)
++.+++.+|+... -+ .+|..|+ ..+-++|..+.+. .|+ .+.||+.
T Consensus 288 v~~LL~~l~~~~~~~~~pvyiGDD----~TDEDaF~~L~~~~~G~----gI~VG~~ 335 (366)
T PLN03017 288 LEFLLESLGFGNTNNVFPVYIGDD----RTDEDAFKMLRDRGEGF----GILVSKF 335 (366)
T ss_pred HHHHHHhcccccCCCceEEEeCCC----CccHHHHHHHhhcCCce----EEEECCC
Confidence 5778888876522 12 4555554 3477788877542 232 3677753
No 277
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=71.87 E-value=18 Score=29.97 Aligned_cols=45 Identities=24% Similarity=0.191 Sum_probs=33.6
Q ss_pred eeeCccHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHhcCcccccceEEec
Q 024886 143 WHLPHGAYQSILLLKDAG-VKVAVVSNFDTRLRKLLKDLNVIDLFDAVVIS 192 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g-~~i~i~T~~~~~~~~~l~~~gl~~~f~~i~~~ 192 (261)
..++|..-++++.+++.| .+++++||+... .+++.+. .+|.++.+
T Consensus 91 PTLy~~L~elI~~~k~~g~~~tflvTNgslp--dv~~~L~---~~dql~~s 136 (296)
T COG0731 91 PTLYPNLGELIEEIKKRGKKTTFLVTNGSLP--DVLEELK---LPDQLYVS 136 (296)
T ss_pred cccccCHHHHHHHHHhcCCceEEEEeCCChH--HHHHHhc---cCCEEEEE
Confidence 588999999999999999 799999998873 3333333 24555544
No 278
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=70.92 E-value=10 Score=30.45 Aligned_cols=44 Identities=9% Similarity=-0.012 Sum_probs=33.3
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEe
Q 024886 147 HGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVI 191 (261)
Q Consensus 147 ~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~ 191 (261)
|...++++.++++|..++++|+.+.. ++.+++.+++.. .+.+++
T Consensus 24 ~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~~~-p~~~I~ 68 (249)
T TIGR01485 24 LRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPLLT-PDIWVT 68 (249)
T ss_pred HHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCCCC-CCEEEE
Confidence 56778888899999999999998866 777877777542 444444
No 279
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=70.90 E-value=7.1 Score=31.26 Aligned_cols=41 Identities=20% Similarity=0.495 Sum_probs=35.2
Q ss_pred HHHHHHHHHHcCCCC--CcEEEEcCCchhhhHHHHhCCCeEEE
Q 024886 202 PRIFKAALDQMSVEA--SRTVHIGDDEKADKQGANSLGIDCWL 242 (261)
Q Consensus 202 ~~~~~~~~~~l~~~~--~~~l~iGD~~~~Di~~a~~~G~~~i~ 242 (261)
.+.|..-++.+|++| .++-||.|++++---+|...||.+++
T Consensus 92 QelYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGlGWEVWl 134 (283)
T PRK09348 92 QELYLGSLEALGIDPLEHDIRFVEDNWESPTLGAWGLGWEVWL 134 (283)
T ss_pred HHHHHHHHHHhCCCccccceeEeecCCCCCcccccccceEEEE
Confidence 356778889999875 78999999999999999999999853
No 280
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=70.90 E-value=2.8 Score=31.12 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=14.9
Q ss_pred cccEEEEccCCccccccc
Q 024886 49 AYDAVLLDAGGTLLQLAE 66 (261)
Q Consensus 49 ~~k~iifD~DGTL~d~~~ 66 (261)
+..++++|+|.||+.+..
T Consensus 5 ~kl~LVLDLDeTLihs~~ 22 (156)
T TIGR02250 5 KKLHLVLDLDQTLIHTTK 22 (156)
T ss_pred CceEEEEeCCCCcccccc
Confidence 456899999999998753
No 281
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=70.78 E-value=27 Score=26.33 Aligned_cols=22 Identities=5% Similarity=0.125 Sum_probs=11.2
Q ss_pred HHHHHHHHCCCeEEEEeCCchH
Q 024886 151 QSILLLKDAGVKVAVVSNFDTR 172 (261)
Q Consensus 151 ~~l~~L~~~g~~i~i~T~~~~~ 172 (261)
++++....++.+++++-+.+..
T Consensus 39 ~l~~~~~~~~~~ifllG~~~~~ 60 (172)
T PF03808_consen 39 DLLRRAEQRGKRIFLLGGSEEV 60 (172)
T ss_pred HHHHHHHHcCCeEEEEeCCHHH
Confidence 3444444455566666554433
No 282
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=70.26 E-value=52 Score=25.99 Aligned_cols=102 Identities=19% Similarity=0.269 Sum_probs=57.4
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchHH---HHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCC--c
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTRL---RKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEAS--R 218 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~~---~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~--~ 218 (261)
+..+...++++..|+.|.+.+++-|....+ +.++....+ +-......+.+.-|=-++.++.+.+.-..-.+ +
T Consensus 93 E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~---VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~ 169 (220)
T COG0036 93 EATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDL---VLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLD 169 (220)
T ss_pred ccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCE---EEEEeECCCCcccccCHHHHHHHHHHHHHhcccCC
Confidence 346778899999999999999999966544 555555532 11111112222223333444443332222111 2
Q ss_pred -EEEEcCC--chhhhHHHHhCCCeEEEECCCCCC
Q 024886 219 -TVHIGDD--EKADKQGANSLGIDCWLWGIDVKT 249 (261)
Q Consensus 219 -~l~iGD~--~~~Di~~a~~~G~~~i~v~~~~~~ 249 (261)
.+-| |. ..+.+.-+..+|...+..++..-.
T Consensus 170 ~~IeV-DGGI~~~t~~~~~~AGad~~VaGSalF~ 202 (220)
T COG0036 170 ILIEV-DGGINLETIKQLAAAGADVFVAGSALFG 202 (220)
T ss_pred eEEEE-eCCcCHHHHHHHHHcCCCEEEEEEEEeC
Confidence 2333 43 245566677789998877776433
No 283
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=69.55 E-value=8.2 Score=31.10 Aligned_cols=41 Identities=20% Similarity=0.452 Sum_probs=35.1
Q ss_pred HHHHHHHHHHcCCCC--CcEEEEcCCchhhhHHHHhCCCeEEE
Q 024886 202 PRIFKAALDQMSVEA--SRTVHIGDDEKADKQGANSLGIDCWL 242 (261)
Q Consensus 202 ~~~~~~~~~~l~~~~--~~~l~iGD~~~~Di~~a~~~G~~~i~ 242 (261)
.+.|..-++.+|++| .++-||.|++++---+|...||.+++
T Consensus 89 QelYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGlGWEVWl 131 (293)
T TIGR00388 89 QELYLDSLRALGIDPTEHDIRFVEDNWENPTLGAWGLGWEVWL 131 (293)
T ss_pred HHHHHHHHHHhCCCccccCeeEeecCCCCCcccccccccEEEE
Confidence 356777788889875 78999999999999999999999853
No 284
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=69.44 E-value=5 Score=31.54 Aligned_cols=44 Identities=27% Similarity=0.313 Sum_probs=28.6
Q ss_pred HHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecC
Q 024886 149 AYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISS 193 (261)
Q Consensus 149 ~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~ 193 (261)
+.++|..|++. +.|+|||+++-. +.+.+....+...||.++...
T Consensus 1 M~~~L~~L~~~-~~vgvVgGsd~~k~~eQl~~~~~~~~fdy~f~en 45 (220)
T PF03332_consen 1 MAELLQKLRKK-VPVGVVGGSDLPKIQEQLGGDDVLDNFDYVFPEN 45 (220)
T ss_dssp HHHHHHHHHTT-SEEEEEESS-HHHHHHHHSTTTHHHH-SEEEEGG
T ss_pred CHHHHHHHHhc-CeEEEEcchhHHHHHHHHcccchHhhCCeeecCC
Confidence 35788999877 999999998865 555553222345577776654
No 285
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=67.87 E-value=51 Score=26.20 Aligned_cols=99 Identities=14% Similarity=0.094 Sum_probs=51.8
Q ss_pred HHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc--CcccccceEEecC-CCCCCCCCHHHHHHHHHHcCCC-CCcEEEEcC
Q 024886 149 AYQSILLLKDAGVKVAVVSNFDTRLRKLLKDL--NVIDLFDAVVISS-EVGCEKPDPRIFKAALDQMSVE-ASRTVHIGD 224 (261)
Q Consensus 149 ~~~~l~~L~~~g~~i~i~T~~~~~~~~~l~~~--gl~~~f~~i~~~~-~~~~~Kp~~~~~~~~~~~l~~~-~~~~l~iGD 224 (261)
..++++.+++.|.++++.-+.....+.+...+ +..+++- +.+.+ +....+-.+..++.+.+--..- .-.+.+-|-
T Consensus 103 ~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~Vl-~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~I~VdGG 181 (228)
T PTZ00170 103 PKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMVL-VMTVEPGFGGQSFMHDMMPKVRELRKRYPHLNIQVDGG 181 (228)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhHH-hhhcccCCCCcEecHHHHHHHHHHHHhcccCeEEECCC
Confidence 56888999999999999877543333222222 2222221 11111 1111122223344333221111 123344454
Q ss_pred CchhhhHHHHhCCCeEEEECCCCC
Q 024886 225 DEKADKQGANSLGIDCWLWGIDVK 248 (261)
Q Consensus 225 ~~~~Di~~a~~~G~~~i~v~~~~~ 248 (261)
=....+..+..+|...+.++++..
T Consensus 182 I~~~ti~~~~~aGad~iVvGsaI~ 205 (228)
T PTZ00170 182 INLETIDIAADAGANVIVAGSSIF 205 (228)
T ss_pred CCHHHHHHHHHcCCCEEEEchHHh
Confidence 446788888999999998888743
No 286
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=67.06 E-value=55 Score=26.97 Aligned_cols=65 Identities=11% Similarity=0.055 Sum_probs=47.0
Q ss_pred cceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCChHHHHHhh
Q 024886 186 FDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFSDVQNRI 257 (261)
Q Consensus 186 f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~~l 257 (261)
.|.++...+.. ..+..-+.+++++.|. ..+.| |+ ..||+...-.|..++++..|..+.+.|.+-+
T Consensus 213 ~Dl~iVVG~~n--SSNs~rL~eiA~~~g~---~aylI-d~-~~ei~~~w~~~~~~VGvTAGAStPd~lV~~V 277 (294)
T COG0761 213 VDLVIVVGSKN--SSNSNRLAEIAKRHGK---PAYLI-DD-AEEIDPEWLKGVKTVGVTAGASTPDWLVQEV 277 (294)
T ss_pred CCEEEEECCCC--CccHHHHHHHHHHhCC---CeEEe-CC-hHhCCHHHhcCccEEEEecCCCCCHHHHHHH
Confidence 45444433322 2344457777888886 46788 66 7999999999999999999998888887654
No 287
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=66.94 E-value=25 Score=33.60 Aligned_cols=94 Identities=11% Similarity=0.176 Sum_probs=58.9
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCC--------------------CCCCCCCH
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSE--------------------VGCEKPDP 202 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~--------------------~~~~Kp~~ 202 (261)
+..||+.+.++.++..|+++-.+|+.+-. .+.+...=|+...=+...+-+. +....|.
T Consensus 647 PvRPgV~~AV~~Cq~AGItVRMVTGDNI~TAkAIA~eCGILt~~~d~~~lEG~eFr~~s~ee~~~i~pkl~VlARSSP~- 725 (1034)
T KOG0204|consen 647 PVRPGVPEAVQLCQRAGITVRMVTGDNINTAKAIARECGILTPGGDFLALEGKEFRELSQEERDKIWPKLRVLARSSPN- 725 (1034)
T ss_pred CCCCCcHHHHHHHHHcCcEEEEEeCCcHHHHHHHHHHcccccCCCccceecchhhhhcCHHHHHhhhhhheeeecCCCc-
Confidence 45899999999999999999999997766 6888777775422221122111 1111221
Q ss_pred HHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeE
Q 024886 203 RIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDC 240 (261)
Q Consensus 203 ~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~ 240 (261)
--..+.+.+--..+=+.+-||. .||-.+.++|.++.
T Consensus 726 -DK~lLVk~L~~~g~VVAVTGDG-TNDaPALkeADVGl 761 (1034)
T KOG0204|consen 726 -DKHLLVKGLIKQGEVVAVTGDG-TNDAPALKEADVGL 761 (1034)
T ss_pred -hHHHHHHHHHhcCcEEEEecCC-CCCchhhhhcccch
Confidence 1222222222223445566887 89999999997764
No 288
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=66.60 E-value=11 Score=28.44 Aligned_cols=91 Identities=23% Similarity=0.256 Sum_probs=50.0
Q ss_pred eeCccHHHHHHHH---HHCCCeEEEEeCCch--HHHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHc---CCC
Q 024886 144 HLPHGAYQSILLL---KDAGVKVAVVSNFDT--RLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQM---SVE 215 (261)
Q Consensus 144 ~~~~g~~~~l~~L---~~~g~~i~i~T~~~~--~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l---~~~ 215 (261)
.+-....++++.| +..+-++++++.... ....+-+.+|+. +...... +++-++..++++ |++
T Consensus 58 ~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~--i~~~~~~--------~~~e~~~~i~~~~~~G~~ 127 (176)
T PF06506_consen 58 EIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVD--IKIYPYD--------SEEEIEAAIKQAKAEGVD 127 (176)
T ss_dssp EE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-E--EEEEEES--------SHHHHHHHHHHHHHTT--
T ss_pred EECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCc--eEEEEEC--------CHHHHHHHHHHHHHcCCc
Confidence 3444455555444 556789999986442 256666666763 2222211 122344444443 554
Q ss_pred CCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCCh
Q 024886 216 ASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTF 250 (261)
Q Consensus 216 ~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~ 250 (261)
++||+. .-.+.|++.|++++++.++..++
T Consensus 128 ----viVGg~--~~~~~A~~~gl~~v~i~sg~esi 156 (176)
T PF06506_consen 128 ----VIVGGG--VVCRLARKLGLPGVLIESGEESI 156 (176)
T ss_dssp ----EEEESH--HHHHHHHHTTSEEEESS--HHHH
T ss_pred ----EEECCH--HHHHHHHHcCCcEEEEEecHHHH
Confidence 789996 45789999999999987764433
No 289
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=66.29 E-value=67 Score=25.73 Aligned_cols=82 Identities=21% Similarity=0.321 Sum_probs=51.9
Q ss_pred CCCeEEEEeCCch----HHHHHHHhc--CcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchh-hhH
Q 024886 159 AGVKVAVVSNFDT----RLRKLLKDL--NVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKA-DKQ 231 (261)
Q Consensus 159 ~g~~i~i~T~~~~----~~~~~l~~~--gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~-Di~ 231 (261)
.++.+.+++.+.+ ++....... .+.+.| .++.|.. ..-|-|..-.++++..|++ |++|||.+.. +.+
T Consensus 30 edI~vrv~gsGaKm~pe~~~~~~~~~~~~~~pDf-~i~isPN--~a~PGP~~ARE~l~~~~iP---~IvI~D~p~~K~~d 103 (277)
T PRK00994 30 EDIDVRVVGSGAKMGPEEVEEVVKKMLEEWKPDF-VIVISPN--PAAPGPKKAREILKAAGIP---CIVIGDAPGKKVKD 103 (277)
T ss_pred cCceEEEeccCCCCCHHHHHHHHHHHHHhhCCCE-EEEECCC--CCCCCchHHHHHHHhcCCC---EEEEcCCCccchHH
Confidence 3788888887542 233333332 344334 2333333 3456666888899998984 8999998543 446
Q ss_pred HHHhCCCeEEEECCC
Q 024886 232 GANSLGIDCWLWGID 246 (261)
Q Consensus 232 ~a~~~G~~~i~v~~~ 246 (261)
.....|++.|.+...
T Consensus 104 ~l~~~g~GYIivk~D 118 (277)
T PRK00994 104 AMEEQGLGYIIVKAD 118 (277)
T ss_pred HHHhcCCcEEEEecC
Confidence 777889998877443
No 290
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=65.15 E-value=32 Score=31.18 Aligned_cols=86 Identities=16% Similarity=0.159 Sum_probs=51.2
Q ss_pred cHHHHHHHHHHCCCeEEEEeCCc--hHHHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEcCC
Q 024886 148 GAYQSILLLKDAGVKVAVVSNFD--TRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDD 225 (261)
Q Consensus 148 g~~~~l~~L~~~g~~i~i~T~~~--~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~ 225 (261)
++...|...++.+-++++++... ..++.+-+.+++. ++.+...... +....-.-++.-|++ ++|||.
T Consensus 85 Dil~al~~a~~~~~~ia~vg~~~~~~~~~~~~~ll~~~--i~~~~~~~~~-----e~~~~~~~l~~~G~~----~viG~~ 153 (526)
T TIGR02329 85 DVMQALARARRIASSIGVVTHQDTPPALRRFQAAFNLD--IVQRSYVTEE-----DARSCVNDLRARGIG----AVVGAG 153 (526)
T ss_pred hHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCc--eEEEEecCHH-----HHHHHHHHHHHCCCC----EEECCh
Confidence 45555555566677999998644 2356666667764 3332221110 111122223334664 678997
Q ss_pred chhhhHHHHhCCCeEEEECCC
Q 024886 226 EKADKQGANSLGIDCWLWGID 246 (261)
Q Consensus 226 ~~~Di~~a~~~G~~~i~v~~~ 246 (261)
.-...|++.|+.++++.++
T Consensus 154 --~~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 154 --LITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred --HHHHHHHHcCCceEEEecH
Confidence 4468899999999999775
No 291
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=64.70 E-value=17 Score=27.90 Aligned_cols=94 Identities=15% Similarity=0.114 Sum_probs=39.4
Q ss_pred CchHHHHHHHHHHhhCCc----eeeCccHHHHHHHHHHCCCeEEEEeCCchH--H--HHHHHhc--CcccccceEEecCC
Q 024886 125 TNDDYFEEVYEYYAKGEA----WHLPHGAYQSILLLKDAGVKVAVVSNFDTR--L--RKLLKDL--NVIDLFDAVVISSE 194 (261)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~----~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~--~--~~~l~~~--gl~~~f~~i~~~~~ 194 (261)
+.......+...++-..- .+++| .+|..+++.|++++++.+.-+. . ...+..+ .+-..||.|+..++
T Consensus 82 D~~~~~~rfl~~~~P~~~i~~EtElWP---nll~~a~~~~ip~~LvNarls~~s~~~~~~~~~~~r~~l~~f~~i~aqs~ 158 (186)
T PF04413_consen 82 DFPWAVRRFLDHWRPDLLIWVETELWP---NLLREAKRRGIPVVLVNARLSERSFRRYRRFPFLFRPLLSRFDRILAQSE 158 (186)
T ss_dssp SSHHHHHHHHHHH--SEEEEES----H---HHHHH-----S-EEEEEE--------------HHHHHHGGG-SEEEESSH
T ss_pred cCHHHHHHHHHHhCCCEEEEEccccCH---HHHHHHhhcCCCEEEEeeeeccccchhhhhhHHHHHHHHHhCCEEEECCH
Confidence 334445555555543110 13344 5677788889999999875432 2 1112211 13356888887654
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhH
Q 024886 195 VGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQ 231 (261)
Q Consensus 195 ~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~ 231 (261)
.-..-..++|++++++.+.|+- .-|..
T Consensus 159 ---------~da~r~~~lG~~~~~v~v~Gnl-Kfd~~ 185 (186)
T PF04413_consen 159 ---------ADAERFRKLGAPPERVHVTGNL-KFDQA 185 (186)
T ss_dssp ---------HHHHHHHTTT-S--SEEE---G-GG---
T ss_pred ---------HHHHHHHHcCCCcceEEEeCcc-hhccc
Confidence 4455678899999999999994 77753
No 292
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=64.31 E-value=77 Score=25.75 Aligned_cols=53 Identities=19% Similarity=0.223 Sum_probs=36.0
Q ss_pred HHHHHHHHHcCCCCCcEEEEcCC-----chhhhHHHHhCCCeEEEECCCC--------CChHHHHHhhh
Q 024886 203 RIFKAALDQMSVEASRTVHIGDD-----EKADKQGANSLGIDCWLWGIDV--------KTFSDVQNRIL 258 (261)
Q Consensus 203 ~~~~~~~~~l~~~~~~~l~iGD~-----~~~Di~~a~~~G~~~i~v~~~~--------~~~~el~~~l~ 258 (261)
+.=..++++++++ +++-=|| ...=+++|++.|++.+.+.++. .+++++.+++.
T Consensus 187 e~n~al~~~~~i~---~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~~~~~~~~~~~~~el~~~l~ 252 (256)
T TIGR00715 187 ELEKALLREYRID---AVVTKASGEQGGELEKVKAAEALGINVIRIARPQTIPGVAIFDDISQLNQFVA 252 (256)
T ss_pred HHHHHHHHHcCCC---EEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCCCCCCCccCCCHHHHHHHHH
Confidence 3446777788865 4444333 1355789999999999987772 46677777664
No 293
>PTZ00174 phosphomannomutase; Provisional
Probab=64.18 E-value=19 Score=28.86 Aligned_cols=35 Identities=23% Similarity=0.352 Sum_probs=28.1
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHH
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLK 178 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~ 178 (261)
.+.|...++++.++++|++++++|+.+.. +...++
T Consensus 22 ~is~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l~ 57 (247)
T PTZ00174 22 PITQEMKDTLAKLKSKGFKIGVVGGSDYPKIKEQLG 57 (247)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHh
Confidence 45567789999999999999999998865 555554
No 294
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=62.68 E-value=74 Score=25.00 Aligned_cols=88 Identities=16% Similarity=0.059 Sum_probs=58.3
Q ss_pred CCeEEEEeCCchHH---HHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEE---cCCchhhhHHH
Q 024886 160 GVKVAVVSNFDTRL---RKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHI---GDDEKADKQGA 233 (261)
Q Consensus 160 g~~i~i~T~~~~~~---~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~i---GD~~~~Di~~a 233 (261)
|.++.|++.+++-. ...+....-. +.+ .--|.+..++.++.++|++.+++.++ |.. .+.+...
T Consensus 68 g~~v~VLasGDP~f~G~g~~l~~~~~~---~~v-------~iIPgiSS~q~a~ARlg~~~~~~~~islHgr~-~~~l~~~ 136 (210)
T COG2241 68 GRDVVVLASGDPLFSGVGRLLRRKFSC---EEV-------EIIPGISSVQLAAARLGWPLQDTEVISLHGRP-VELLRPL 136 (210)
T ss_pred CCCeEEEecCCcchhhhHHHHHHhcCc---cce-------EEecChhHHHHHHHHhCCChHHeEEEEecCCC-HHHHHHH
Confidence 67888888777653 3333333111 111 12466779999999999998887776 343 5666666
Q ss_pred HhCCCeEEEECCCCCChHHHHHhhh
Q 024886 234 NSLGIDCWLWGIDVKTFSDVQNRIL 258 (261)
Q Consensus 234 ~~~G~~~i~v~~~~~~~~el~~~l~ 258 (261)
..-|-..+..........++++.|.
T Consensus 137 ~~~~~~~vil~~~~~~P~~IA~~L~ 161 (210)
T COG2241 137 LENGRRLVILTPDDFGPAEIAKLLT 161 (210)
T ss_pred HhCCceEEEeCCCCCCHHHHHHHHH
Confidence 6667677777777777888887774
No 295
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=60.19 E-value=43 Score=25.19 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=10.4
Q ss_pred HHHHHHHHCCCeEEEEeCCch
Q 024886 151 QSILLLKDAGVKVAVVSNFDT 171 (261)
Q Consensus 151 ~~l~~L~~~g~~i~i~T~~~~ 171 (261)
++++...+++.+++++-+.+.
T Consensus 37 ~ll~~~~~~~~~v~llG~~~~ 57 (171)
T cd06533 37 ALLELAAQKGLRVFLLGAKPE 57 (171)
T ss_pred HHHHHHHHcCCeEEEECCCHH
Confidence 344444444555665544333
No 296
>PLN02887 hydrolase family protein
Probab=58.03 E-value=18 Score=33.11 Aligned_cols=40 Identities=15% Similarity=0.229 Sum_probs=33.8
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcc
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVI 183 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~ 183 (261)
.+.+...+.++.++++|+.++++|+.+.. +..+++.+++.
T Consensus 325 ~Is~~t~eAI~kl~ekGi~~vIATGR~~~~i~~~l~~L~l~ 365 (580)
T PLN02887 325 QISETNAKALKEALSRGVKVVIATGKARPAVIDILKMVDLA 365 (580)
T ss_pred ccCHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhCcc
Confidence 35667889999999999999999998866 77888888764
No 297
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=57.87 E-value=69 Score=23.14 Aligned_cols=101 Identities=14% Similarity=0.106 Sum_probs=54.3
Q ss_pred HHHHHHHHCCCeEEEEeC-CchH-HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCc--
Q 024886 151 QSILLLKDAGVKVAVVSN-FDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDE-- 226 (261)
Q Consensus 151 ~~l~~L~~~g~~i~i~T~-~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~-- 226 (261)
-+...|+..|+++..+-. -+.+ +-......+ .+.+..|...+...+...-+...+++.+.+ .-.+++|-..
T Consensus 22 iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~----~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~-~~~i~vGG~~~~ 96 (137)
T PRK02261 22 ILDRALTEAGFEVINLGVMTSQEEFIDAAIETD----ADAILVSSLYGHGEIDCRGLREKCIEAGLG-DILLYVGGNLVV 96 (137)
T ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC----CCEEEEcCccccCHHHHHHHHHHHHhcCCC-CCeEEEECCCCC
Confidence 334556778888777643 2222 333333333 355555554444443333344444555543 2345666552
Q ss_pred -----hhhhHHHHhCCCeEEEECCCCCChHHHHHhhh
Q 024886 227 -----KADKQGANSLGIDCWLWGIDVKTFSDVQNRIL 258 (261)
Q Consensus 227 -----~~Di~~a~~~G~~~i~v~~~~~~~~el~~~l~ 258 (261)
..+.+.+++.|+..++- +...++++.+++.
T Consensus 97 ~~~~~~~~~~~l~~~G~~~vf~--~~~~~~~i~~~l~ 131 (137)
T PRK02261 97 GKHDFEEVEKKFKEMGFDRVFP--PGTDPEEAIDDLK 131 (137)
T ss_pred CccChHHHHHHHHHcCCCEEEC--cCCCHHHHHHHHH
Confidence 35667888889766433 2346778777764
No 298
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=57.70 E-value=1e+02 Score=25.01 Aligned_cols=94 Identities=16% Similarity=0.090 Sum_probs=53.9
Q ss_pred CccHHHHHHHHHHCCCeEEEEeC-Cc-hH-HHHHHHhcCcccccceEEecCCCCCC-----CCCHHHHHHHHHHcCCCCC
Q 024886 146 PHGAYQSILLLKDAGVKVAVVSN-FD-TR-LRKLLKDLNVIDLFDAVVISSEVGCE-----KPDPRIFKAALDQMSVEAS 217 (261)
Q Consensus 146 ~~g~~~~l~~L~~~g~~i~i~T~-~~-~~-~~~~l~~~gl~~~f~~i~~~~~~~~~-----Kp~~~~~~~~~~~l~~~~~ 217 (261)
.+...++++.++++|...+++-+ .. .+ +..+.+.. +-|-.+++....... .+-.+.++.+.+..+.
T Consensus 126 ~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~---~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~--- 199 (256)
T TIGR00262 126 LEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKS---QGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAK--- 199 (256)
T ss_pred hHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhC---CCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCC---
Confidence 45677889999999988664444 33 22 45555543 223344444322211 1122334444443333
Q ss_pred cEEEEcCC--chhhhHHHHhCCCeEEEECCC
Q 024886 218 RTVHIGDD--EKADKQGANSLGIDCWLWGID 246 (261)
Q Consensus 218 ~~l~iGD~--~~~Di~~a~~~G~~~i~v~~~ 246 (261)
.+++|=. ...++..+..+|...+.+++.
T Consensus 200 -pi~vgfGI~~~e~~~~~~~~GADgvVvGSa 229 (256)
T TIGR00262 200 -PVLVGFGISKPEQVKQAIDAGADGVIVGSA 229 (256)
T ss_pred -CEEEeCCCCCHHHHHHHHHcCCCEEEECHH
Confidence 2566543 146899999999999999876
No 299
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=57.69 E-value=7.5 Score=23.82 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=15.6
Q ss_pred HHHHHHHcCCCCCcEEEEcCCchhhhHHHH
Q 024886 205 FKAALDQMSVEASRTVHIGDDEKADKQGAN 234 (261)
Q Consensus 205 ~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~ 234 (261)
.+.+++++|+ .+++||. ..|+++..
T Consensus 7 VqQLLK~fG~----~IY~gdr-~~DielM~ 31 (62)
T PF06014_consen 7 VQQLLKKFGI----IIYVGDR-LWDIELME 31 (62)
T ss_dssp HHHHHHTTS---------S-H-HHHHHHHH
T ss_pred HHHHHHHCCE----EEEeCCh-HHHHHHHH
Confidence 5678899998 6999995 89998864
No 300
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=57.37 E-value=21 Score=33.30 Aligned_cols=38 Identities=18% Similarity=0.162 Sum_probs=31.8
Q ss_pred CccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcc
Q 024886 146 PHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVI 183 (261)
Q Consensus 146 ~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~ 183 (261)
.+...+.++.|+++|++++++|+.... +..+.+.+++.
T Consensus 435 ~~~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~~~Lgl~ 473 (694)
T PRK14502 435 YSTALDALRLLKDKELPLVFCSAKTMGEQDLYRNELGIK 473 (694)
T ss_pred CHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 345678899999999999999998866 78888888864
No 301
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=57.13 E-value=68 Score=25.64 Aligned_cols=28 Identities=21% Similarity=0.071 Sum_probs=24.2
Q ss_pred eCccHHHHHHHHHHCCCeEEEEeCCchH
Q 024886 145 LPHGAYQSILLLKDAGVKVAVVSNFDTR 172 (261)
Q Consensus 145 ~~~g~~~~l~~L~~~g~~i~i~T~~~~~ 172 (261)
+.++..++++.+++.|+++.+-||+...
T Consensus 85 l~~~l~~li~~l~~~g~~v~leTNGtl~ 112 (238)
T TIGR03365 85 LQKPLGELIDLGKAKGYRFALETQGSVW 112 (238)
T ss_pred hhHhHHHHHHHHHHCCCCEEEECCCCCc
Confidence 3477889999999999999999998754
No 302
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=56.80 E-value=67 Score=26.67 Aligned_cols=36 Identities=19% Similarity=0.294 Sum_probs=26.9
Q ss_pred CccHHHHHHHHHHCCCeEEEEeCCchH--HHHHHHhcC
Q 024886 146 PHGAYQSILLLKDAGVKVAVVSNFDTR--LRKLLKDLN 181 (261)
Q Consensus 146 ~~g~~~~l~~L~~~g~~i~i~T~~~~~--~~~~l~~~g 181 (261)
-||+..+-+.|...|.++.++|..... +...++..+
T Consensus 62 P~GA~aLa~aL~~lG~~~~ivtd~~~~~~~~~~~~~~~ 99 (291)
T PF14336_consen 62 PPGAAALARALQALGKEVVIVTDERCAPVVKAAVRAAG 99 (291)
T ss_pred hHHHHHHHHHHHHcCCeEEEEECHHHHHHHHHHHHHHh
Confidence 368888999999999999999986533 455555443
No 303
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=56.09 E-value=47 Score=28.36 Aligned_cols=75 Identities=13% Similarity=0.100 Sum_probs=48.3
Q ss_pred CccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEcC
Q 024886 146 PHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGD 224 (261)
Q Consensus 146 ~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD 224 (261)
.||+..+|..+.. .|.|+++|..... ...+++.+.-..++..-...+....--++ .-.=+..+|-++..+++| |
T Consensus 216 RPgvD~FL~~~a~-~yEIVi~sse~gmt~~pl~d~lDP~g~IsYkLfr~~t~y~~G~---HvKdls~LNRdl~kVivV-d 290 (393)
T KOG2832|consen 216 RPGVDYFLGHLAK-YYEIVVYSSEQGMTVFPLLDALDPKGYISYKLFRGATKYEEGH---HVKDLSKLNRDLQKVIVV-D 290 (393)
T ss_pred CchHHHHHHhhcc-cceEEEEecCCccchhhhHhhcCCcceEEEEEecCcccccCcc---chhhhhhhccccceeEEE-E
Confidence 6899999999884 4999999987665 67788887644344333332221111000 111267788899999999 5
Q ss_pred C
Q 024886 225 D 225 (261)
Q Consensus 225 ~ 225 (261)
.
T Consensus 291 ~ 291 (393)
T KOG2832|consen 291 F 291 (393)
T ss_pred c
Confidence 4
No 304
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=55.88 E-value=35 Score=26.94 Aligned_cols=92 Identities=17% Similarity=0.157 Sum_probs=64.1
Q ss_pred eeCccHH-HHHHHHHHCCCeEEEEeCCc-h-----HHHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCC
Q 024886 144 HLPHGAY-QSILLLKDAGVKVAVVSNFD-T-----RLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEA 216 (261)
Q Consensus 144 ~~~~g~~-~~l~~L~~~g~~i~i~T~~~-~-----~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~ 216 (261)
.+.|++. ++.+.+++.|.+..|+.... . .+++.++.+|+.-.|...+|+=+- .++| .+...++.+|-+-
T Consensus 59 ~lHPDl~~~l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~gi~~~~P~~~CsL~~-~~~p---~i~~F~~~fGkP~ 134 (217)
T PF02593_consen 59 GLHPDLTYELPEIAKEAGVKAVIVPSESPKPGLRRQLKKQLEEFGIEVEFPKPFCSLEE-NGNP---QIDEFAEYFGKPK 134 (217)
T ss_pred ccCchhHHHHHHHHHHcCCCEEEEecCCCccchHHHHHHHHHhcCceeecCccccccCC-CCCh---hHHHHHHHhCCce
Confidence 4567776 67777788899988887543 3 468899999988778777776442 2233 5777777799754
Q ss_pred CcEEEEcCCchhhhHHHHhCCCeE
Q 024886 217 SRTVHIGDDEKADKQGANSLGIDC 240 (261)
Q Consensus 217 ~~~l~iGD~~~~Di~~a~~~G~~~ 240 (261)
=++ .+.|+...|++..+.+-+++
T Consensus 135 ~ei-~v~~~~I~~V~VlR~aPCGs 157 (217)
T PF02593_consen 135 VEI-EVENGKIKDVKVLRSAPCGS 157 (217)
T ss_pred EEE-EecCCcEEEEEEEecCCCcc
Confidence 444 45565678888877777765
No 305
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=55.83 E-value=20 Score=28.43 Aligned_cols=13 Identities=38% Similarity=0.664 Sum_probs=7.8
Q ss_pred EEccCCccccccc
Q 024886 54 LLDAGGTLLQLAE 66 (261)
Q Consensus 54 ifD~DGTL~d~~~ 66 (261)
+||+||||.+...
T Consensus 1 ~lDyDGTL~p~~~ 13 (235)
T PF02358_consen 1 FLDYDGTLAPIVD 13 (235)
T ss_dssp EEE-TTTSS---S
T ss_pred CcccCCccCCCCC
Confidence 6999999986543
No 306
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=54.84 E-value=54 Score=24.95 Aligned_cols=23 Identities=4% Similarity=-0.094 Sum_probs=12.8
Q ss_pred HHHHHHHHCCCeEEEEeCCchHH
Q 024886 151 QSILLLKDAGVKVAVVSNFDTRL 173 (261)
Q Consensus 151 ~~l~~L~~~g~~i~i~T~~~~~~ 173 (261)
++++...+++.+++++-+.+..+
T Consensus 39 ~l~~~~~~~~~~vfllG~~~~v~ 61 (177)
T TIGR00696 39 ELCQRAGKEKLPIFLYGGKPDVL 61 (177)
T ss_pred HHHHHHHHcCCeEEEECCCHHHH
Confidence 44555555666777775544433
No 307
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=54.36 E-value=33 Score=27.17 Aligned_cols=41 Identities=10% Similarity=0.085 Sum_probs=29.3
Q ss_pred HHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecC
Q 024886 151 QSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISS 193 (261)
Q Consensus 151 ~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~ 193 (261)
+.++ ++++|+.++++|+.+.. +..+++.+++. ..+.+++..
T Consensus 22 ~~~~-~~~~gi~~viaTGR~~~~v~~~~~~l~l~-~~~~~I~~n 63 (236)
T TIGR02471 22 ELLR-GSGDAVGFGIATGRSVESAKSRYAKLNLP-SPDVLIARV 63 (236)
T ss_pred HHHH-hcCCCceEEEEeCCCHHHHHHHHHhCCCC-CCCEEEECC
Confidence 3444 46778999999998876 88898888874 344455443
No 308
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=54.34 E-value=25 Score=29.58 Aligned_cols=28 Identities=18% Similarity=0.018 Sum_probs=24.9
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCch
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDT 171 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~ 171 (261)
.++|.+.++++.+++.|+.+.+.||+..
T Consensus 142 lL~p~l~eli~~~k~~Gi~~~L~TNG~~ 169 (322)
T PRK13762 142 TLYPYLPELIEEFHKRGFTTFLVTNGTR 169 (322)
T ss_pred cchhhHHHHHHHHHHcCCCEEEECCCCC
Confidence 4578899999999999999999999864
No 309
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=51.92 E-value=1.3e+02 Score=25.55 Aligned_cols=94 Identities=15% Similarity=0.098 Sum_probs=50.9
Q ss_pred HHHHHHHHHC-CC-eEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHHH---HHHHHHHcCCCCCcEEEEc
Q 024886 150 YQSILLLKDA-GV-KVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRI---FKAALDQMSVEASRTVHIG 223 (261)
Q Consensus 150 ~~~l~~L~~~-g~-~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~---~~~~~~~l~~~~~~~l~iG 223 (261)
..+++.|++. ++ ...++|+.... ...+++.+++.+.++..+........+--... +..++++.+ |+=++..|
T Consensus 17 ~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--pDiv~~~g 94 (365)
T TIGR00236 17 APLIRALKKYPEIDSYVIVTAQHREMLDQVLDLFHLPPDYDLNIMSPGQTLGEITSNMLEGLEELLLEEK--PDIVLVQG 94 (365)
T ss_pred HHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHhcCCCCCeeeecCCCCCCHHHHHHHHHHHHHHHHHHcC--CCEEEEeC
Confidence 4566777765 33 35667887766 57778778886433333322111111212222 333334433 66566677
Q ss_pred CCchhh---hHHHHhCCCeEEEECCC
Q 024886 224 DDEKAD---KQGANSLGIDCWLWGID 246 (261)
Q Consensus 224 D~~~~D---i~~a~~~G~~~i~v~~~ 246 (261)
|. ..- ..+|...|++.+++.-+
T Consensus 95 d~-~~~la~a~aa~~~~ipv~h~~~g 119 (365)
T TIGR00236 95 DT-TTTLAGALAAFYLQIPVGHVEAG 119 (365)
T ss_pred Cc-hHHHHHHHHHHHhCCCEEEEeCC
Confidence 75 443 44567779998877433
No 310
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=51.24 E-value=91 Score=22.52 Aligned_cols=102 Identities=18% Similarity=0.158 Sum_probs=53.3
Q ss_pred HHHHHHHCCCeEEEEeCCchHHHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCc---hh
Q 024886 152 SILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDE---KA 228 (261)
Q Consensus 152 ~l~~L~~~g~~i~i~T~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~---~~ 228 (261)
+...|+++|++++-+-- +...+.+++.. ...-.|.+-.|.-.+...+...-....+++.|+. .-.+++|-.. ..
T Consensus 21 v~~~l~~~GfeVi~LG~-~v~~e~~v~aa-~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~-~~~vivGG~~vi~~~ 97 (134)
T TIGR01501 21 LDHAFTNAGFNVVNLGV-LSPQEEFIKAA-IETKADAILVSSLYGHGEIDCKGLRQKCDEAGLE-GILLYVGGNLVVGKQ 97 (134)
T ss_pred HHHHHHHCCCEEEECCC-CCCHHHHHHHH-HHcCCCEEEEecccccCHHHHHHHHHHHHHCCCC-CCEEEecCCcCcChh
Confidence 34556778887766543 22222222222 1112345554544444433333444555666764 2356777742 35
Q ss_pred hhH----HHHhCCCeEEEECCCCCChHHHHHhhh
Q 024886 229 DKQ----GANSLGIDCWLWGIDVKTFSDVQNRIL 258 (261)
Q Consensus 229 Di~----~a~~~G~~~i~v~~~~~~~~el~~~l~ 258 (261)
|.. .++++|+..++ +. ...++++.++|.
T Consensus 98 d~~~~~~~l~~~Gv~~vF-~p-gt~~~~iv~~l~ 129 (134)
T TIGR01501 98 DFPDVEKRFKEMGFDRVF-AP-GTPPEVVIADLK 129 (134)
T ss_pred hhHHHHHHHHHcCCCEEE-Cc-CCCHHHHHHHHH
Confidence 544 47888876643 33 346788887775
No 311
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=50.76 E-value=1.2e+02 Score=26.41 Aligned_cols=44 Identities=7% Similarity=0.139 Sum_probs=25.3
Q ss_pred HHHcCCCCCcEEEEcCC-chhhhHHHHhCCCeEEEECCCCCChHHHHHh
Q 024886 209 LDQMSVEASRTVHIGDD-EKADKQGANSLGIDCWLWGIDVKTFSDVQNR 256 (261)
Q Consensus 209 ~~~l~~~~~~~l~iGD~-~~~Di~~a~~~G~~~i~v~~~~~~~~el~~~ 256 (261)
+...|+++++++|-|-. ...+++.|.+.|+..+.+ ++.+||..+
T Consensus 73 al~~G~~~~~Iif~gp~K~~~~l~~a~~~Gv~~i~v----DS~~El~~i 117 (394)
T cd06831 73 VQELGVSPENIIYTNPCKQASQIKYAAKVGVNIMTC----DNEIELKKI 117 (394)
T ss_pred HHhcCCCcCCEEEeCCCCCHHHHHHHHHCCCCEEEE----CCHHHHHHH
Confidence 33457777777765542 246677777777665443 445555443
No 312
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=50.22 E-value=61 Score=26.10 Aligned_cols=70 Identities=16% Similarity=0.184 Sum_probs=35.0
Q ss_pred HHHHHHHHCCCeEEEEeCCchHHHHHHHhcCcccccce-EEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEcCC
Q 024886 151 QSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDA-VVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDD 225 (261)
Q Consensus 151 ~~l~~L~~~g~~i~i~T~~~~~~~~~l~~~gl~~~f~~-i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~ 225 (261)
++++...++|++++++-+.+..++...+.+.-. | .. +++..+ |.-. ++-.+.+++..+-...++++||=.
T Consensus 96 ~ll~~~~~~~~~v~llG~~~~v~~~a~~~l~~~-y-~l~i~g~~~-Gyf~--~~e~~~i~~~I~~s~~dil~VglG 166 (243)
T PRK03692 96 ALMARAGKEGTPVFLVGGKPEVLAQTEAKLRTQ-W-NVNIVGSQD-GYFT--PEQRQALFERIHASGAKIVTVAMG 166 (243)
T ss_pred HHHHHHHhcCCeEEEECCCHHHHHHHHHHHHHH-h-CCEEEEEeC-CCCC--HHHHHHHHHHHHhcCCCEEEEECC
Confidence 455555667888998866554444333333211 1 11 222221 2222 223455666666666667777643
No 313
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=49.84 E-value=1.2e+02 Score=23.59 Aligned_cols=105 Identities=14% Similarity=0.123 Sum_probs=63.2
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCcccccceE-EecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEcC-
Q 024886 147 HGAYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAV-VISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGD- 224 (261)
Q Consensus 147 ~g~~~~l~~L~~~g~~i~i~T~~~~~~~~~l~~~gl~~~f~~i-~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD- 224 (261)
+.+.++++..+..|....+...+..++....+ .|. +.+ ++..+.....++.+.+..+.+.+.. .-.++..|-
T Consensus 108 ~~~~~~~~~~~~~g~~~~v~v~~~~e~~~~~~-~g~----~~i~~t~~~~~~~~~~~~~~~~l~~~~~~-~~pvia~gGI 181 (217)
T cd00331 108 EQLKELYELARELGMEVLVEVHDEEELERALA-LGA----KIIGINNRDLKTFEVDLNTTERLAPLIPK-DVILVSESGI 181 (217)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCHHHHHHHHH-cCC----CEEEEeCCCccccCcCHHHHHHHHHhCCC-CCEEEEEcCC
Confidence 35566777777778877666665555544443 343 322 2223333445676777777776531 123444443
Q ss_pred CchhhhHHHHhCCCeEEEECCCCCChHHHHHhh
Q 024886 225 DEKADKQGANSLGIDCWLWGIDVKTFSDVQNRI 257 (261)
Q Consensus 225 ~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~~l 257 (261)
+...|+..+..+|...+.+++......+..+.+
T Consensus 182 ~s~edi~~~~~~Ga~gvivGsai~~~~~p~~~~ 214 (217)
T cd00331 182 STPEDVKRLAEAGADAVLIGESLMRAPDPGAAL 214 (217)
T ss_pred CCHHHHHHHHHcCCCEEEECHHHcCCCCHHHHH
Confidence 224899999999999999988865555554443
No 314
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=49.45 E-value=20 Score=31.78 Aligned_cols=20 Identities=25% Similarity=0.207 Sum_probs=13.5
Q ss_pred cccccEEEEccCCccccccc
Q 024886 47 KKAYDAVLLDAGGTLLQLAE 66 (261)
Q Consensus 47 ~~~~k~iifD~DGTL~d~~~ 66 (261)
+.++++|-||+|-||+.=..
T Consensus 9 l~~i~~iGFDmDyTLa~Y~~ 28 (448)
T PF05761_consen 9 LKDIDVIGFDMDYTLARYKS 28 (448)
T ss_dssp CCC--EEEE-TBTTTBEE-C
T ss_pred cccCCEEEECcccchhhcCH
Confidence 56899999999999986544
No 315
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=48.97 E-value=79 Score=28.84 Aligned_cols=86 Identities=16% Similarity=0.137 Sum_probs=51.0
Q ss_pred cHHHHHHHHHHCCCeEEEEeCCc--hHHHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEcCC
Q 024886 148 GAYQSILLLKDAGVKVAVVSNFD--TRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDD 225 (261)
Q Consensus 148 g~~~~l~~L~~~g~~i~i~T~~~--~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~ 225 (261)
++...|...++.+-++++++... ..+..+-+.+++. ++.+...... +....-.-++..|++ ++|||.
T Consensus 95 Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l~~~--i~~~~~~~~~-----e~~~~v~~lk~~G~~----~vvG~~ 163 (538)
T PRK15424 95 DVMQALARARKLTSSIGVVTYQETIPALVAFQKTFNLR--IEQRSYVTEE-----DARGQINELKANGIE----AVVGAG 163 (538)
T ss_pred HHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCc--eEEEEecCHH-----HHHHHHHHHHHCCCC----EEEcCc
Confidence 45555555566677999998644 2356666677764 3322221110 111122223345664 678997
Q ss_pred chhhhHHHHhCCCeEEEECCC
Q 024886 226 EKADKQGANSLGIDCWLWGID 246 (261)
Q Consensus 226 ~~~Di~~a~~~G~~~i~v~~~ 246 (261)
.-.+.|.++|+..+++.++
T Consensus 164 --~~~~~A~~~g~~g~~~~s~ 182 (538)
T PRK15424 164 --LITDLAEEAGMTGIFIYSA 182 (538)
T ss_pred --hHHHHHHHhCCceEEecCH
Confidence 3478999999999888654
No 316
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=48.59 E-value=41 Score=21.31 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=36.6
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEE
Q 024886 197 CEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCW 241 (261)
Q Consensus 197 ~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i 241 (261)
..-|-...+..+++++++++..+..|-.+ .-.|..++.+|--.+
T Consensus 24 E~aPftAvlkfaAEeFkv~~~TsAiiTnd-GvGINP~qtAGnvfl 67 (82)
T cd01766 24 ESTPFTAVLKFAAEEFKVPAATSAIITND-GIGINPAQTAGNVFL 67 (82)
T ss_pred ccCchHHHHHHHHHhcCCCccceeEEecC-ccccChhhcccceee
Confidence 34566778999999999999999999888 799999999985443
No 317
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ]. In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the alpha subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3RF1_A 3UFG_B 3RGL_B 1J5W_B.
Probab=48.57 E-value=9.3 Score=30.78 Aligned_cols=41 Identities=17% Similarity=0.425 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHcCCC--CCcEEEEcCCchhhhHHHHhCCCeEE
Q 024886 201 DPRIFKAALDQMSVE--ASRTVHIGDDEKADKQGANSLGIDCW 241 (261)
Q Consensus 201 ~~~~~~~~~~~l~~~--~~~~l~iGD~~~~Di~~a~~~G~~~i 241 (261)
-.+.|..-++.+|++ ..++-||.|++++-.-+|...||.++
T Consensus 86 iq~lYL~SL~~lGId~~~hDIRFVEDnWEsPtLGAwGlGWEVW 128 (284)
T PF02091_consen 86 IQELYLESLEALGIDPKEHDIRFVEDNWESPTLGAWGLGWEVW 128 (284)
T ss_dssp HHHHHHHHHHHCT--CCCS-EEEEEE-EEETTTTEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCccccceeEeecCCCCCcccccccccEEE
Confidence 346788888999986 47899999999999999999998874
No 318
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=46.72 E-value=1.3e+02 Score=22.98 Aligned_cols=101 Identities=17% Similarity=0.115 Sum_probs=57.4
Q ss_pred HHHHHHHHHHCCCeEEEE--eCCchH-HHHHHHhcCcccccceEEecC--CCCC--CCCCHHHHHHHHHHcCCCCCcEEE
Q 024886 149 AYQSILLLKDAGVKVAVV--SNFDTR-LRKLLKDLNVIDLFDAVVISS--EVGC--EKPDPRIFKAALDQMSVEASRTVH 221 (261)
Q Consensus 149 ~~~~l~~L~~~g~~i~i~--T~~~~~-~~~~l~~~gl~~~f~~i~~~~--~~~~--~Kp~~~~~~~~~~~l~~~~~~~l~ 221 (261)
..++++..++.|.++++. +..+.. ... ....|. |.+.... ..+. .....+.+..+.+..+ -.++.
T Consensus 92 ~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~-~~~~~~----d~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~i~~ 163 (202)
T cd04726 92 IKKAVKAAKKYGKEVQVDLIGVEDPEKRAK-LLKLGV----DIVILHRGIDAQAAGGWWPEDDLKKVKKLLG---VKVAV 163 (202)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCCCHHHHHH-HHHCCC----CEEEEcCcccccccCCCCCHHHHHHHHhhcC---CCEEE
Confidence 567888889999999873 433333 333 233333 3322211 0111 2334455555554422 33556
Q ss_pred EcCCchhhhHHHHhCCCeEEEECCCCCChHHHHHhh
Q 024886 222 IGDDEKADKQGANSLGIDCWLWGIDVKTFSDVQNRI 257 (261)
Q Consensus 222 iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~~l 257 (261)
.|-=...++..+.++|...+.+++.....++..+.+
T Consensus 164 ~GGI~~~~i~~~~~~Gad~vvvGsai~~~~d~~~~~ 199 (202)
T cd04726 164 AGGITPDTLPEFKKAGADIVIVGRAITGAADPAEAA 199 (202)
T ss_pred ECCcCHHHHHHHHhcCCCEEEEeehhcCCCCHHHHH
Confidence 644347899999999999999988865444444433
No 319
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=46.35 E-value=39 Score=26.11 Aligned_cols=42 Identities=17% Similarity=0.074 Sum_probs=33.6
Q ss_pred EEEEcCCchhhhHHHHhCCCeEEEECC-----CCCChHHHHHhhhcc
Q 024886 219 TVHIGDDEKADKQGANSLGIDCWLWGI-----DVKTFSDVQNRILIT 260 (261)
Q Consensus 219 ~l~iGD~~~~Di~~a~~~G~~~i~v~~-----~~~~~~el~~~l~~~ 260 (261)
+-|-|+|+...+++|++.|+....+++ .+++.+||.++..+.
T Consensus 138 ~~y~g~SF~~Hl~~Ark~G~~~~~~dSf~l~~DVDtpeDL~e~~~hG 184 (210)
T COG1920 138 PRYGGVSFLRHLEEARKRGLVVLTYDSFGLSADVDTPEDLVEAFIHG 184 (210)
T ss_pred ccccCccHHHHHHHHHHcCCEEEEecccceecCCCCHHHHHHHHHhC
Confidence 348889999999999999998764433 388999999887653
No 320
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=46.21 E-value=79 Score=25.63 Aligned_cols=24 Identities=8% Similarity=-0.006 Sum_probs=13.6
Q ss_pred HHHHHHHHHCCCeEEEEeCCchHH
Q 024886 150 YQSILLLKDAGVKVAVVSNFDTRL 173 (261)
Q Consensus 150 ~~~l~~L~~~g~~i~i~T~~~~~~ 173 (261)
..+++....+|.+++++-+.+..+
T Consensus 98 ~~Ll~~a~~~~~~vfllGgkp~V~ 121 (253)
T COG1922 98 EALLKRAAEEGKRVFLLGGKPGVA 121 (253)
T ss_pred HHHHHHhCccCceEEEecCCHHHH
Confidence 344555455567777776655433
No 321
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=45.97 E-value=12 Score=24.10 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=13.6
Q ss_pred cEEEEccCCccccccc
Q 024886 51 DAVLLDAGGTLLQLAE 66 (261)
Q Consensus 51 k~iifD~DGTL~d~~~ 66 (261)
-.++++-|||.+|++.
T Consensus 41 ~~lvL~eDGT~Vd~Ee 56 (78)
T cd06539 41 VTLVLEEDGTVVDTEE 56 (78)
T ss_pred cEEEEeCCCCEEccHH
Confidence 4699999999998764
No 322
>PLN02591 tryptophan synthase
Probab=45.78 E-value=1.6e+02 Score=23.82 Aligned_cols=99 Identities=12% Similarity=0.162 Sum_probs=51.6
Q ss_pred CccHHHHHHHHHHCCCeEEEE-eCCch-H-HHHHHHhcCcccccceEEecCCC-CCCCCCHHHHHHHHHHcC--CCCCcE
Q 024886 146 PHGAYQSILLLKDAGVKVAVV-SNFDT-R-LRKLLKDLNVIDLFDAVVISSEV-GCEKPDPRIFKAALDQMS--VEASRT 219 (261)
Q Consensus 146 ~~g~~~~l~~L~~~g~~i~i~-T~~~~-~-~~~~l~~~gl~~~f~~i~~~~~~-~~~Kp~~~~~~~~~~~l~--~~~~~~ 219 (261)
++...++.+.++++|+....+ |-... + ++.+.+.. .-|=..++...+ +.....+..+...+++.. .+..=+
T Consensus 117 ~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~---~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~ 193 (250)
T PLN02591 117 LEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEAS---EGFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVA 193 (250)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhC---CCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceE
Confidence 356778888999998665554 44333 2 45555543 112233333222 211111222333222221 122223
Q ss_pred EEEcCCchhhhHHHHhCCCeEEEECCCC
Q 024886 220 VHIGDDEKADKQGANSLGIDCWLWGIDV 247 (261)
Q Consensus 220 l~iGD~~~~Di~~a~~~G~~~i~v~~~~ 247 (261)
+=+|=+...|++.+...|...+.|++..
T Consensus 194 vGFGI~~~e~v~~~~~~GADGvIVGSal 221 (250)
T PLN02591 194 VGFGISKPEHAKQIAGWGADGVIVGSAM 221 (250)
T ss_pred EeCCCCCHHHHHHHHhcCCCEEEECHHH
Confidence 3444443569999999999999998863
No 323
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=45.72 E-value=1.4e+02 Score=22.94 Aligned_cols=103 Identities=18% Similarity=0.134 Sum_probs=53.2
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCch--H-HHHHHHhcCcccccceEEecCCCCCCC--CCHH---HHHHHHHHcCC-CC-
Q 024886 147 HGAYQSILLLKDAGVKVAVVSNFDT--R-LRKLLKDLNVIDLFDAVVISSEVGCEK--PDPR---IFKAALDQMSV-EA- 216 (261)
Q Consensus 147 ~g~~~~l~~L~~~g~~i~i~T~~~~--~-~~~~l~~~gl~~~f~~i~~~~~~~~~K--p~~~---~~~~~~~~l~~-~~- 216 (261)
+...+.++.++..|..+++..+... + ++.+... .+++-. .+.. .+..+ -... .+..+.+..+- .+
T Consensus 92 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~d~i~~-~~~~-~g~tg~~~~~~~~~~i~~~~~~~~~~~~~ 166 (211)
T cd00429 92 DHLHRTIQLIKELGMKAGVALNPGTPVEVLEPYLDE---VDLVLV-MSVN-PGFGGQKFIPEVLEKIRKLRELIPENNLN 166 (211)
T ss_pred hhHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHhh---CCEEEE-EEEC-CCCCCcccCHHHHHHHHHHHHHHHhcCCC
Confidence 3456778888888998888875322 2 2333222 122211 1111 12222 1122 23333333320 11
Q ss_pred CcEEEEcCCchhhhHHHHhCCCeEEEECCCCCChHHHH
Q 024886 217 SRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFSDVQ 254 (261)
Q Consensus 217 ~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~ 254 (261)
-.+++.|-=...++..+.+.|...+.+++......+..
T Consensus 167 ~pi~v~GGI~~env~~~~~~gad~iivgsai~~~~~~~ 204 (211)
T cd00429 167 LLIEVDGGINLETIPLLAEAGADVLVAGSALFGSDDYA 204 (211)
T ss_pred eEEEEECCCCHHHHHHHHHcCCCEEEECHHHhCCCCHH
Confidence 23556555447889999999999998888744444433
No 324
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=45.51 E-value=12 Score=24.21 Aligned_cols=16 Identities=19% Similarity=0.381 Sum_probs=13.6
Q ss_pred cEEEEccCCccccccc
Q 024886 51 DAVLLDAGGTLLQLAE 66 (261)
Q Consensus 51 k~iifD~DGTL~d~~~ 66 (261)
-.|+++-|||.+|++.
T Consensus 40 ~~lvLeeDGT~Vd~Ee 55 (81)
T cd06537 40 LTLVLEEDGTAVDSED 55 (81)
T ss_pred eEEEEecCCCEEccHH
Confidence 4699999999998764
No 325
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=45.44 E-value=12 Score=23.81 Aligned_cols=16 Identities=25% Similarity=0.466 Sum_probs=13.5
Q ss_pred cEEEEccCCccccccc
Q 024886 51 DAVLLDAGGTLLQLAE 66 (261)
Q Consensus 51 k~iifD~DGTL~d~~~ 66 (261)
-.|+++-|||.+|++.
T Consensus 39 ~~l~L~eDGT~VddEe 54 (74)
T smart00266 39 VTLVLEEDGTIVDDEE 54 (74)
T ss_pred cEEEEecCCcEEccHH
Confidence 4689999999998764
No 326
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=44.57 E-value=1.3e+02 Score=22.25 Aligned_cols=86 Identities=23% Similarity=0.216 Sum_probs=47.1
Q ss_pred CCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHH---HcCC--CCCcEEEEcCCchhhhHH
Q 024886 159 AGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALD---QMSV--EASRTVHIGDDEKADKQG 232 (261)
Q Consensus 159 ~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~---~l~~--~~~~~l~iGD~~~~Di~~ 232 (261)
.+.++.+++|.+.. +...+..+.... +.++....-+..+--...++.+.+ +.+. ....+++|-|. ..-+..
T Consensus 48 ~~~~i~~~~~~D~~~~~~~~~~~~~~~--tlvi~iSkSG~T~Et~~~~~~a~~~l~~~~~~~~~~~~vaiT~~-~s~l~~ 124 (158)
T cd05015 48 GGLRLHFVSNVDPDDLAELLKKLDPET--TLFIVISKSGTTLETLANARLAREWLEEAGGDDLAKHFVAITDN-GSGLLK 124 (158)
T ss_pred CCceEEEEeCCCHHHHHHHHHhCCccc--EEEEEEECCcCCHHHHHHHHHHHHHHHHhccccccceEEEEcCC-ChHHHH
Confidence 46778888888876 466776665332 223332222333322233333333 2222 45688999885 565655
Q ss_pred -HHhCCCeEEEECCCC
Q 024886 233 -ANSLGIDCWLWGIDV 247 (261)
Q Consensus 233 -a~~~G~~~i~v~~~~ 247 (261)
|...|.....+..++
T Consensus 125 ~a~~~~~~~~~~~~~v 140 (158)
T cd05015 125 KAGIEGLNTFEIPDWV 140 (158)
T ss_pred HcCCCcceeeeCCCCC
Confidence 566677776665553
No 327
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=44.43 E-value=43 Score=24.60 Aligned_cols=25 Identities=12% Similarity=0.379 Sum_probs=21.3
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCch
Q 024886 147 HGAYQSILLLKDAGVKVAVVSNFDT 171 (261)
Q Consensus 147 ~g~~~~l~~L~~~g~~i~i~T~~~~ 171 (261)
+.+.++++.+++.|+++.+.||...
T Consensus 75 ~~l~~ll~~lk~~Gl~i~l~Tg~~~ 99 (147)
T TIGR02826 75 EALLSLLKIFKEKGLKTCLYTGLEP 99 (147)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCC
Confidence 4577889999999999999999654
No 328
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=43.76 E-value=2e+02 Score=24.41 Aligned_cols=89 Identities=16% Similarity=0.135 Sum_probs=51.6
Q ss_pred HHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHc-------CCCCCcEEEE
Q 024886 150 YQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQM-------SVEASRTVHI 222 (261)
Q Consensus 150 ~~~l~~L~~~g~~i~i~T~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l-------~~~~~~~l~i 222 (261)
+.++.+|.+.|+.+.|.+=.......+++.+|+ +.++.+.... ++ .......+.+.+ ..+|+ +++-
T Consensus 17 k~~I~eL~~~GheV~it~R~~~~~~~LL~~yg~----~y~~iG~~g~-~~-~~Kl~~~~~R~~~l~~~~~~~~pD-v~is 89 (335)
T PF04007_consen 17 KNIIRELEKRGHEVLITARDKDETEELLDLYGI----DYIVIGKHGD-SL-YGKLLESIERQYKLLKLIKKFKPD-VAIS 89 (335)
T ss_pred HHHHHHHHhCCCEEEEEEeccchHHHHHHHcCC----CeEEEcCCCC-CH-HHHHHHHHHHHHHHHHHHHhhCCC-EEEe
Confidence 467888999999988877645557889999986 4444333211 11 111222222211 23443 4444
Q ss_pred cCCchhhhHHHHhCCCeEEEECCC
Q 024886 223 GDDEKADKQGANSLGIDCWLWGID 246 (261)
Q Consensus 223 GD~~~~Di~~a~~~G~~~i~v~~~ 246 (261)
+.+ ..-...|...|+++|.+.+.
T Consensus 90 ~~s-~~a~~va~~lgiP~I~f~D~ 112 (335)
T PF04007_consen 90 FGS-PEAARVAFGLGIPSIVFNDT 112 (335)
T ss_pred cCc-HHHHHHHHHhCCCeEEEecC
Confidence 455 45555888889999877554
No 329
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=43.71 E-value=62 Score=30.41 Aligned_cols=89 Identities=13% Similarity=0.130 Sum_probs=50.4
Q ss_pred CccHHHHHHHHHHCCCeEEEEeCCchH--HHHHHHh-cCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEE
Q 024886 146 PHGAYQSILLLKDAGVKVAVVSNFDTR--LRKLLKD-LNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHI 222 (261)
Q Consensus 146 ~~g~~~~l~~L~~~g~~i~i~T~~~~~--~~~~l~~-~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~i 222 (261)
..++..-|..|+.++...-++++..-+ ++..... ..+......++++.-.+. .+..+...+.++-| ..+..|
T Consensus 713 r~dah~eL~~lR~k~~~aLvi~G~Sl~~cl~yye~Ef~el~~~~~aVv~CRctPt--QKA~v~~llq~~t~---krvc~I 787 (1051)
T KOG0210|consen 713 RGDAHNELNNLRRKTDCALVIDGESLEFCLKYYEDEFIELVCELPAVVCCRCTPT--QKAQVVRLLQKKTG---KRVCAI 787 (1051)
T ss_pred chHHHHHHHHhhcCCCcEEEEcCchHHHHHHHHHHHHHHHHHhcCcEEEEecChh--HHHHHHHHHHHhhC---ceEEEE
Confidence 346777788888886666666664433 2222221 122222334444432221 23334444444444 678999
Q ss_pred cCCchhhhHHHHhCCCeE
Q 024886 223 GDDEKADKQGANSLGIDC 240 (261)
Q Consensus 223 GD~~~~Di~~a~~~G~~~ 240 (261)
||. .||+.|.+.|.++.
T Consensus 788 GDG-GNDVsMIq~A~~Gi 804 (1051)
T KOG0210|consen 788 GDG-GNDVSMIQAADVGI 804 (1051)
T ss_pred cCC-Cccchheeecccce
Confidence 998 89999998886654
No 330
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=43.40 E-value=1.5e+02 Score=22.92 Aligned_cols=97 Identities=19% Similarity=0.211 Sum_probs=49.6
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCc--hH-HHHHHHhcCcccccceEEecCCCCCCCC--CHHHHHHH---HHHcCCC--C
Q 024886 147 HGAYQSILLLKDAGVKVAVVSNFD--TR-LRKLLKDLNVIDLFDAVVISSEVGCEKP--DPRIFKAA---LDQMSVE--A 216 (261)
Q Consensus 147 ~g~~~~l~~L~~~g~~i~i~T~~~--~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp--~~~~~~~~---~~~l~~~--~ 216 (261)
+...+.++.+++.|.++++..+.. .+ ++.+... .+++ .+.+.+ .+..+. .+..++.+ .+..+.. +
T Consensus 96 ~~~~~~~~~~~~~~~~~g~~~~~~t~~e~~~~~~~~---~d~i-~~~~~~-~g~tg~~~~~~~~~~i~~~~~~~~~~~~~ 170 (220)
T PRK05581 96 EHIHRLLQLIKSAGIKAGLVLNPATPLEPLEDVLDL---LDLV-LLMSVN-PGFGGQKFIPEVLEKIRELRKLIDERGLD 170 (220)
T ss_pred hhHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHhh---CCEE-EEEEEC-CCCCcccccHHHHHHHHHHHHHHHhcCCC
Confidence 344567888889999999987532 22 2322222 1222 111111 122221 23333332 2222210 1
Q ss_pred CcEEEEcCCchhhhHHHHhCCCeEEEECCCCC
Q 024886 217 SRTVHIGDDEKADKQGANSLGIDCWLWGIDVK 248 (261)
Q Consensus 217 ~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~ 248 (261)
-.+++.|-=...++..+.+.|...+.+++..-
T Consensus 171 ~~i~v~GGI~~~nv~~l~~~GaD~vvvgSai~ 202 (220)
T PRK05581 171 ILIEVDGGINADNIKECAEAGADVFVAGSAVF 202 (220)
T ss_pred ceEEEECCCCHHHHHHHHHcCCCEEEEChhhh
Confidence 22444454336788888889999998888744
No 331
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=43.35 E-value=65 Score=27.50 Aligned_cols=102 Identities=19% Similarity=0.154 Sum_probs=63.8
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCchH---H---HHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHc---CCCCC
Q 024886 147 HGAYQSILLLKDAGVKVAVVSNFDTR---L---RKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQM---SVEAS 217 (261)
Q Consensus 147 ~g~~~~l~~L~~~g~~i~i~T~~~~~---~---~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l---~~~~~ 217 (261)
+++.+.++.+++.|.+++|++|.... . ...++.+- +.-.|.++.+| |.++..+.+.. .+..+
T Consensus 49 ~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~-e~GvDaviv~D--------pg~i~l~~e~~p~l~ih~S 119 (347)
T COG0826 49 EDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLV-ELGVDAVIVAD--------PGLIMLARERGPDLPIHVS 119 (347)
T ss_pred HHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHH-HcCCCEEEEcC--------HHHHHHHHHhCCCCcEEEe
Confidence 45788899999999999999985421 2 23344331 12247777655 33444444433 22233
Q ss_pred cEEEEcCCchhhhHHHHhCCCeEEEECCCCCChHHHHHhhhcc
Q 024886 218 RTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFSDVQNRILIT 260 (261)
Q Consensus 218 ~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~~l~~~ 260 (261)
-...+ .+ ...++...+.|+.-+ |-...-+..++.++..+.
T Consensus 120 ~q~~v-~N-~~~~~f~~~~G~~rv-Vl~rEls~~ei~~i~~~~ 159 (347)
T COG0826 120 TQANV-TN-AETAKFWKELGAKRV-VLPRELSLEEIKEIKEQT 159 (347)
T ss_pred eeEec-CC-HHHHHHHHHcCCEEE-EeCccCCHHHHHHHHHhC
Confidence 33444 66 688999999996654 445566688888887653
No 332
>PF01114 Colipase: Colipase, N-terminal domain; InterPro: IPR017913 This entry represents the N-terminal domain of colipase proteins. Colipase [, ] is a small protein cofactor needed by pancreatic lipase for efficient dietary lipid hydrolyisis. It also binds to the bile-salt covered triacylglycerol interface, thus allowing the enzyme to anchor itself to the water-lipid interface. Efficient absorption of dietary fats is dependent on the action of pancreatic triglyceride lipase. Colipase binds to the C-terminal, non-catalytic domain of lipase, thereby stabilising as active conformation and considerably increasing the overall hydrophobic binding site. Structural studies of the complex and of colipase alone have revealed the functionality of its architecture [, ]. Colipase is a small protein with five conserved disulphide bonds. Structural analogies have been recognised between a developmental protein (Dickkopf), the pancreatic lipase C-terminal domain, the N-terminal domains of lipoxygenases and the C-terminal domain of alpha-toxin. These non-catalytic domains in the latter enzymes are important for interaction with membrane. It has not been established if these domains are also involved in eventual protein cofactor binding as is the case for pancreatic lipase [].; GO: 0008047 enzyme activator activity, 0007586 digestion, 0016042 lipid catabolic process, 0005576 extracellular region; PDB: 1PCO_A 1PCN_A 1LPA_A 1N8S_C 1LPB_A 1ETH_D.
Probab=42.94 E-value=6.5 Score=21.53 Aligned_cols=13 Identities=46% Similarity=1.027 Sum_probs=7.7
Q ss_pred hhhhhccccchhh
Q 024886 3 ACISKCCHGNSLL 15 (261)
Q Consensus 3 ~~~~~~~~~~~~~ 15 (261)
.|-|.|||+.+.+
T Consensus 19 QCkS~CC~~~~~l 31 (40)
T PF01114_consen 19 QCKSQCCQRDSGL 31 (40)
T ss_dssp GBSSS-EE-SSSS
T ss_pred hhCcchhccCCCc
Confidence 4778888876644
No 333
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=42.83 E-value=2.2e+02 Score=24.46 Aligned_cols=90 Identities=17% Similarity=0.142 Sum_probs=62.9
Q ss_pred CccHH-HHHHHHHHCCCeEEEEeCCchHHHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCC-CCcEEEEc
Q 024886 146 PHGAY-QSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVE-ASRTVHIG 223 (261)
Q Consensus 146 ~~g~~-~~l~~L~~~g~~i~i~T~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~-~~~~l~iG 223 (261)
.-|++ ..|+.|.+.|+++.|+-... ..+.+++.. .|.++-|...|-+++-...+..+.+-++.. | ++|
T Consensus 186 D~GvK~nIlr~L~~rg~~vtVVP~~t-~~eeIl~~~-----pDGiflSNGPGDP~~~~~~i~~ik~l~~~~iP----ifG 255 (368)
T COG0505 186 DFGVKRNILRELVKRGCRVTVVPADT-SAEEILALN-----PDGIFLSNGPGDPAPLDYAIETIKELLGTKIP----IFG 255 (368)
T ss_pred EcCccHHHHHHHHHCCCeEEEEcCCC-CHHHHHhhC-----CCEEEEeCCCCChhHHHHHHHHHHHHhccCCC----eEE
Confidence 34777 68999999999999996533 234454433 589999998777777777777777777755 4 455
Q ss_pred CCchhhhHHHHhCCCeEEEECCC
Q 024886 224 DDEKADKQGANSLGIDCWLWGID 246 (261)
Q Consensus 224 D~~~~Di~~a~~~G~~~i~v~~~ 246 (261)
=.+ -.-..|...|.++.-+..|
T Consensus 256 ICL-GHQllalA~Ga~T~KmkFG 277 (368)
T COG0505 256 ICL-GHQLLALALGAKTYKMKFG 277 (368)
T ss_pred EcH-HHHHHHHhcCCceeecccC
Confidence 553 3334777788888766555
No 334
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=42.48 E-value=1.6e+02 Score=24.29 Aligned_cols=66 Identities=12% Similarity=0.055 Sum_probs=41.2
Q ss_pred ccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCChHHHHHhh
Q 024886 185 LFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFSDVQNRI 257 (261)
Q Consensus 185 ~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~~l 257 (261)
..|.++...+ ..-++..-+..+++..|. ++++|++ ..|+..-.-.|...|++..|..+++.+.+-+
T Consensus 209 ~vD~miVIGg--~~SsNT~kL~eia~~~~~---~t~~Ie~--~~el~~~~l~~~~~VGItaGASTP~~ii~eV 274 (281)
T PF02401_consen 209 EVDAMIVIGG--KNSSNTRKLAEIAKEHGK---PTYHIET--ADELDPEWLKGVKKVGITAGASTPDWIIEEV 274 (281)
T ss_dssp CSSEEEEES---TT-HHHHHHHHHHHHCTT---CEEEESS--GGG--HHHHTT-SEEEEEE-TTS-HHHHHHH
T ss_pred hCCEEEEecC--CCCccHHHHHHHHHHhCC---CEEEeCC--ccccCHhHhCCCCEEEEEccCCCCHHHHHHH
Confidence 3454444332 223455567778888775 5799955 6899988888888999988888888777655
No 335
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=42.34 E-value=1.5e+02 Score=25.67 Aligned_cols=93 Identities=12% Similarity=0.101 Sum_probs=53.6
Q ss_pred HHHHHHHHCC-C-eEEEEeCCch--H-HHHHHHhcCcc-cccceEEecCCCCCCCCCHH---HHHHHHHHcCCCCCcEEE
Q 024886 151 QSILLLKDAG-V-KVAVVSNFDT--R-LRKLLKDLNVI-DLFDAVVISSEVGCEKPDPR---IFKAALDQMSVEASRTVH 221 (261)
Q Consensus 151 ~~l~~L~~~g-~-~i~i~T~~~~--~-~~~~l~~~gl~-~~f~~i~~~~~~~~~Kp~~~---~~~~~~~~l~~~~~~~l~ 221 (261)
.++.++.+++ + .+.++|+... + ...+++.+++. +.++.-+.-+.-..++--.. .++.++. ...|+-+++
T Consensus 21 pli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~~~~~tl~~~t~~~i~~~~~vl~--~~kPD~VlV 98 (383)
T COG0381 21 PLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIMKPGQTLGEITGNIIEGLSKVLE--EEKPDLVLV 98 (383)
T ss_pred HHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCCcchhccccCCCHHHHHHHHHHHHHHHHH--hhCCCEEEE
Confidence 4567776664 3 4566788776 6 58889999987 55554443111111111111 2334444 356889999
Q ss_pred EcCCchhhhHHHHh---CCCeEEEECCC
Q 024886 222 IGDDEKADKQGANS---LGIDCWLWGID 246 (261)
Q Consensus 222 iGD~~~~Di~~a~~---~G~~~i~v~~~ 246 (261)
-||+ ..=+.+|.. ..++..+|--|
T Consensus 99 hGDT-~t~lA~alaa~~~~IpV~HvEAG 125 (383)
T COG0381 99 HGDT-NTTLAGALAAFYLKIPVGHVEAG 125 (383)
T ss_pred eCCc-chHHHHHHHHHHhCCceEEEecc
Confidence 9998 566654333 36666666544
No 336
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=42.26 E-value=1.6e+02 Score=22.67 Aligned_cols=90 Identities=11% Similarity=-0.004 Sum_probs=53.3
Q ss_pred HHHHHHHHCCCeEEEEeCCchHHHHHHHhcCcccccceEEecCCC-CCCCC------CHHHHHHHHHHcCCCCCcEEEEc
Q 024886 151 QSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEV-GCEKP------DPRIFKAALDQMSVEASRTVHIG 223 (261)
Q Consensus 151 ~~l~~L~~~g~~i~i~T~~~~~~~~~l~~~gl~~~f~~i~~~~~~-~~~Kp------~~~~~~~~~~~l~~~~~~~l~iG 223 (261)
..++.++..+..+++.+.+..++.... ..|. |.+..+.-. ...|| ..+.+..+.+.++ .-.++..|
T Consensus 95 ~~~~~~~~~~~~~g~~~~t~~e~~~a~-~~ga----D~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~v~a~G 167 (212)
T PRK00043 95 ADARALLGPDAIIGLSTHTLEEAAAAL-AAGA----DYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVG--DIPIVAIG 167 (212)
T ss_pred HHHHHHcCCCCEEEEeCCCHHHHHHHh-HcCC----CEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC--CCCEEEEC
Confidence 445556666778887776434433222 2343 344332111 11122 1467777777664 24477787
Q ss_pred CCchhhhHHHHhCCCeEEEECCCC
Q 024886 224 DDEKADKQGANSLGIDCWLWGIDV 247 (261)
Q Consensus 224 D~~~~Di~~a~~~G~~~i~v~~~~ 247 (261)
-=...++..+..+|...+.+++..
T Consensus 168 GI~~~~i~~~~~~Ga~gv~~gs~i 191 (212)
T PRK00043 168 GITPENAPEVLEAGADGVAVVSAI 191 (212)
T ss_pred CcCHHHHHHHHHcCCCEEEEeHHh
Confidence 655789999999999998887664
No 337
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=41.29 E-value=1.3e+02 Score=21.52 Aligned_cols=96 Identities=13% Similarity=0.131 Sum_probs=48.3
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCchH-H-HHHHHh----cCcccccceEEecCC-C-----CCCCCCHHHHHHHHHHcCC
Q 024886 147 HGAYQSILLLKDAGVKVAVVSNFDTR-L-RKLLKD----LNVIDLFDAVVISSE-V-----GCEKPDPRIFKAALDQMSV 214 (261)
Q Consensus 147 ~g~~~~l~~L~~~g~~i~i~T~~~~~-~-~~~l~~----~gl~~~f~~i~~~~~-~-----~~~Kp~~~~~~~~~~~l~~ 214 (261)
..+.+.+.....+|-+++++-|+... . ..+... .++.......+.... . ...-..+.+.+.+.+.+++
T Consensus 22 ~~aa~~i~~~~~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (138)
T PF13580_consen 22 EKAADLIAEALRNGGRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAIALNDDALTAISNDLEYDEGFARQLLALYDI 101 (138)
T ss_dssp HHHHHHHHHHHHTT--EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEEETTSTHHHHHHHHTTGGGTHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCcccccccccccchHhhhhcccchhhHHHHHHHHHcCC
Confidence 33445555556677899999887764 2 322222 233333332322221 1 0111123356777888889
Q ss_pred CCCcEEEE----cCCchhhhH---HHHhCCCeEEEE
Q 024886 215 EASRTVHI----GDDEKADKQ---GANSLGIDCWLW 243 (261)
Q Consensus 215 ~~~~~l~i----GD~~~~Di~---~a~~~G~~~i~v 243 (261)
.|.+++++ |.+ ++-++ .|++.|+.+|.+
T Consensus 102 ~~gDvli~iS~SG~s-~~vi~a~~~Ak~~G~~vIal 136 (138)
T PF13580_consen 102 RPGDVLIVISNSGNS-PNVIEAAEEAKERGMKVIAL 136 (138)
T ss_dssp -TT-EEEEEESSS-S-HHHHHHHHHHHHTT-EEEEE
T ss_pred CCCCEEEEECCCCCC-HHHHHHHHHHHHCCCEEEEE
Confidence 99999988 555 55554 456669998876
No 338
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=41.14 E-value=3.9 Score=32.12 Aligned_cols=42 Identities=10% Similarity=-0.043 Sum_probs=30.4
Q ss_pred CCcEEEEcCCc---hhhhHHHHhCCCeEEEECCCCCChHHHHHhh
Q 024886 216 ASRTVHIGDDE---KADKQGANSLGIDCWLWGIDVKTFSDVQNRI 257 (261)
Q Consensus 216 ~~~~l~iGD~~---~~Di~~a~~~G~~~i~v~~~~~~~~el~~~l 257 (261)
.++++||||.. .||.+.....+..++-|.++.++.+.+.+++
T Consensus 175 ~~~I~FfGDkt~pGGNDyei~~~~rt~g~~V~~p~DT~~~l~~l~ 219 (220)
T PF03332_consen 175 FDEIHFFGDKTFPGGNDYEIFEDPRTIGHTVTSPEDTIKQLKELF 219 (220)
T ss_dssp -SEEEEEESS-STTSTTHHHHHSTTSEEEE-SSHHHHHHHHHHHH
T ss_pred cceEEEEehhccCCCCCceeeecCCccEEEeCCHHHHHHHHHHHh
Confidence 68999999953 4899998888888888877666666655543
No 339
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=41.07 E-value=97 Score=21.22 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=27.8
Q ss_pred HHHHHHHHCCCeEEEEeCCch-HHHHHHHhcCcccccceEEe
Q 024886 151 QSILLLKDAGVKVAVVSNFDT-RLRKLLKDLNVIDLFDAVVI 191 (261)
Q Consensus 151 ~~l~~L~~~g~~i~i~T~~~~-~~~~~l~~~gl~~~f~~i~~ 191 (261)
+....|.+.|+++++|+-++. .++.+.+..++. ++ +++
T Consensus 4 ~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~~~~p--~~-ly~ 42 (115)
T PF13911_consen 4 RRKPELEAAGVKLVVIGCGSPEGIEKFCELTGFP--FP-LYV 42 (115)
T ss_pred HhHHHHHHcCCeEEEEEcCCHHHHHHHHhccCCC--Cc-EEE
Confidence 446778889999999998777 478888776653 45 554
No 340
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=41.03 E-value=2.5e+02 Score=24.56 Aligned_cols=78 Identities=19% Similarity=0.191 Sum_probs=47.4
Q ss_pred CCeEEEEe--CCchHHHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCc-hhhhHHHHhC
Q 024886 160 GVKVAVVS--NFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDE-KADKQGANSL 236 (261)
Q Consensus 160 g~~i~i~T--~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~-~~Di~~a~~~ 236 (261)
|.+++... |+...+-.++...|.. ||..-. . =+.. +.+.|++|+++++-|... ..+++.|.+.
T Consensus 52 ~~~i~yAvKAn~~~~il~~l~~~g~g--~Dv~S~-g----------El~~-al~aG~~~~~I~f~g~~ks~~ei~~a~e~ 117 (394)
T COG0019 52 GAKVFYAVKANSNPAILRLLAEEGSG--FDVASL-G----------ELEL-ALAAGFPPERIVFSGPAKSEEEIAFALEL 117 (394)
T ss_pred CceEEEEEcCCCCHHHHHHHHHhCCC--ceecCH-H----------HHHH-HHHcCCChhhEEECCCCCCHHHHHHHHHc
Confidence 45666665 4444466777777653 443311 0 1222 333399999999988752 4578888888
Q ss_pred CCeEEEECCCCCChHHHHH
Q 024886 237 GIDCWLWGIDVKTFSDVQN 255 (261)
Q Consensus 237 G~~~i~v~~~~~~~~el~~ 255 (261)
|+..+.++ +..||..
T Consensus 118 gi~~i~vd----S~~El~~ 132 (394)
T COG0019 118 GIKLINVD----SEEELER 132 (394)
T ss_pred CCcEEEeC----CHHHHHH
Confidence 99876663 3555543
No 341
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=40.61 E-value=16 Score=23.56 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=13.4
Q ss_pred cEEEEccCCccccccc
Q 024886 51 DAVLLDAGGTLLQLAE 66 (261)
Q Consensus 51 k~iifD~DGTL~d~~~ 66 (261)
-.|+++-|||.+|++.
T Consensus 41 ~~lvL~eDGTeVddEe 56 (78)
T cd01615 41 VTLVLEEDGTEVDDEE 56 (78)
T ss_pred eEEEEeCCCcEEccHH
Confidence 4599999999998764
No 342
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=40.20 E-value=2.3e+02 Score=25.01 Aligned_cols=20 Identities=20% Similarity=0.401 Sum_probs=11.9
Q ss_pred CeEEEEeCCchH-HHHHHHhc
Q 024886 161 VKVAVVSNFDTR-LRKLLKDL 180 (261)
Q Consensus 161 ~~i~i~T~~~~~-~~~~l~~~ 180 (261)
.+|+|+|+.... +..+++.+
T Consensus 136 ~~I~viTs~~gAa~~D~~~~~ 156 (438)
T PRK00286 136 KRIGVITSPTGAAIRDILTVL 156 (438)
T ss_pred CEEEEEeCCccHHHHHHHHHH
Confidence 478888876654 44444433
No 343
>PF04358 DsrC: DsrC like protein; InterPro: IPR007453 DsrC (P45573 from SWISSPROT) has been observed to co-purify with Desulphovibrio vulgaris dissimilatory sulphite reductase []. However, DsrC appears to be only loosely associated to the sulphite reductase, which suggests that it may not be an integral part of the dissimilatory sulphite reductase. Many proteins in this entry are found in organisms such as Escherichia coli and Haemophilus influenzae which do not contain dissimilatory sulphite reductases but can synthesise assimilatory sirohaem sulphite and nitrite reductases. It is speculated that DsrC may be involved in the assembly, folding or stabilisation of sirohaem proteins []. The strictly conserved cysteine in the C terminus suggests that DsrC may have a catalytic function in the metabolism of sulphur compounds []. Also included in this entry is TusE, a partner to TusBCD in a sulphur relay system for 2-thiouridine biosynthesis, a tRNA base modification process. Many proteins in this entry are annotated as the third (gamma) subunit of dissimilatory sulphite reductase ; PDB: 2V4J_F 2A5W_C 1SAU_A 1JI8_A 1YX3_A.
Probab=39.92 E-value=1.3e+02 Score=20.92 Aligned_cols=37 Identities=19% Similarity=0.306 Sum_probs=23.5
Q ss_pred cEEEEccCCccccccccHHHHHHHHHHHhCCCCCHHH
Q 024886 51 DAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSAD 87 (261)
Q Consensus 51 k~iifD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~ 87 (261)
+.|-+|=||=|+|...=-.+....++++.|+.++.+.
T Consensus 7 ~~i~~D~eGfL~~~~dW~eevA~~lA~~egI~Ltd~H 43 (109)
T PF04358_consen 7 KTIETDEEGFLVDPEDWNEEVAEALAKEEGIELTDEH 43 (109)
T ss_dssp EEEEEETTSEESSGGG--HHHHHHHHHCTT-S--HHH
T ss_pred EEeeeCCCcCcCChHhCCHHHHHHHHHHcCCCCCHHH
Confidence 5689999999999654334455666666788877664
No 344
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=39.90 E-value=1.3e+02 Score=21.03 Aligned_cols=99 Identities=15% Similarity=0.093 Sum_probs=49.4
Q ss_pred HHHHHHHCCCeEEEEeCC-chH-HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEcC-Cchh
Q 024886 152 SILLLKDAGVKVAVVSNF-DTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGD-DEKA 228 (261)
Q Consensus 152 ~l~~L~~~g~~i~i~T~~-~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD-~~~~ 228 (261)
+...|+..|+.+...-.. +.+ +-......+ -+.+..|.......+...-+...+++.+.+ .-.+++|- ....
T Consensus 19 ~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~----~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~-~i~i~~GG~~~~~ 93 (122)
T cd02071 19 IARALRDAGFEVIYTGLRQTPEEIVEAAIQED----VDVIGLSSLSGGHMTLFPEVIELLRELGAG-DILVVGGGIIPPE 93 (122)
T ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC----CCEEEEcccchhhHHHHHHHHHHHHhcCCC-CCEEEEECCCCHH
Confidence 344567788887766532 222 333333333 344554444333444433334444444443 33355553 3344
Q ss_pred hhHHHHhCCCeEEEECCCCCChHHHHHhh
Q 024886 229 DKQGANSLGIDCWLWGIDVKTFSDVQNRI 257 (261)
Q Consensus 229 Di~~a~~~G~~~i~v~~~~~~~~el~~~l 257 (261)
+++...++|+..+.- +..+.+++...+
T Consensus 94 ~~~~~~~~G~d~~~~--~~~~~~~~~~~~ 120 (122)
T cd02071 94 DYELLKEMGVAEIFG--PGTSIEEIIDKI 120 (122)
T ss_pred HHHHHHHCCCCEEEC--CCCCHHHHHHHH
Confidence 577777889876332 234466666655
No 345
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=39.47 E-value=1.3e+02 Score=21.05 Aligned_cols=62 Identities=8% Similarity=0.010 Sum_probs=38.6
Q ss_pred ccHHHHHHH-HHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCC-CCCCCCCHHHHHHHHH
Q 024886 147 HGAYQSILL-LKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSE-VGCEKPDPRIFKAALD 210 (261)
Q Consensus 147 ~g~~~~l~~-L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~-~~~~Kp~~~~~~~~~~ 210 (261)
..+.+.++. +.+.++-|.++|....+ +...++++. ..+-.++.-.+ -+.+.|..+.+..-++
T Consensus 46 eei~~~~~~~l~~~digIIlIte~~a~~i~~~I~~~~--~~~PaIieIP~k~~~y~~~~d~i~~~~~ 110 (115)
T TIGR01101 46 SEIEDCFNRFLKRDDIAIILINQHIAEMIRHAVDAHT--RSIPAVLEIPSKDHPYDASKDSILRRAR 110 (115)
T ss_pred HHHHHHHHHHhhcCCeEEEEEcHHHHHHhHHHHHhcC--CcCCEEEEECCCCCCCCCcccHHHHHHH
Confidence 456778877 67778889999986655 677777765 34455555443 3445554444443333
No 346
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=39.35 E-value=1.8e+02 Score=22.65 Aligned_cols=100 Identities=14% Similarity=0.115 Sum_probs=59.4
Q ss_pred cHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHhcCcccccceEEec-C-----CCCCCCCCHHHHHHHHHHcCCCCCcEE
Q 024886 148 GAYQSILLLKDAG-VKVAVVSNFDTRLRKLLKDLNVIDLFDAVVIS-S-----EVGCEKPDPRIFKAALDQMSVEASRTV 220 (261)
Q Consensus 148 g~~~~l~~L~~~g-~~i~i~T~~~~~~~~~l~~~gl~~~f~~i~~~-~-----~~~~~Kp~~~~~~~~~~~l~~~~~~~l 220 (261)
...++++.+++.| ..+. +.-.+.+........|. |.+... . ......+..+.+..+.+..+++ ++
T Consensus 110 ~~~~~i~~~~~~g~~~ii-v~v~t~~ea~~a~~~G~----d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ip---vi 181 (219)
T cd04729 110 TLAELIKRIHEEYNCLLM-ADISTLEEALNAAKLGF----DIIGTTLSGYTEETAKTEDPDFELLKELRKALGIP---VI 181 (219)
T ss_pred CHHHHHHHHHHHhCCeEE-EECCCHHHHHHHHHcCC----CEEEccCccccccccCCCCCCHHHHHHHHHhcCCC---EE
Confidence 5678888888887 4443 33323332233444554 333221 1 1112334556777777777543 66
Q ss_pred EEcCC-chhhhHHHHhCCCeEEEECCCCCChHHHHH
Q 024886 221 HIGDD-EKADKQGANSLGIDCWLWGIDVKTFSDVQN 255 (261)
Q Consensus 221 ~iGD~-~~~Di~~a~~~G~~~i~v~~~~~~~~el~~ 255 (261)
..|.= ...|+..+...|...+.+++.....++...
T Consensus 182 a~GGI~~~~~~~~~l~~GadgV~vGsal~~~~~~~~ 217 (219)
T cd04729 182 AEGRINSPEQAAKALELGADAVVVGSAITRPEHITG 217 (219)
T ss_pred EeCCCCCHHHHHHHHHCCCCEEEEchHHhChHhHhh
Confidence 66652 158999999999999999988766665544
No 347
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=39.20 E-value=17 Score=23.57 Aligned_cols=16 Identities=19% Similarity=0.383 Sum_probs=13.4
Q ss_pred cEEEEccCCccccccc
Q 024886 51 DAVLLDAGGTLLQLAE 66 (261)
Q Consensus 51 k~iifD~DGTL~d~~~ 66 (261)
-.|+++-|||.+|++.
T Consensus 43 ~~lvL~eDGT~VddEe 58 (80)
T cd06536 43 ITLVLAEDGTIVEDED 58 (80)
T ss_pred eEEEEecCCcEEccHH
Confidence 4689999999998764
No 348
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=39.16 E-value=2.3e+02 Score=23.69 Aligned_cols=89 Identities=25% Similarity=0.250 Sum_probs=55.8
Q ss_pred HHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCcccccceEEec-CCC-CC--CCCCHHHHHHHHHHcCCCCCcEEEEcCC
Q 024886 150 YQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVIS-SEV-GC--EKPDPRIFKAALDQMSVEASRTVHIGDD 225 (261)
Q Consensus 150 ~~~l~~L~~~g~~i~i~T~~~~~~~~~l~~~gl~~~f~~i~~~-~~~-~~--~Kp~~~~~~~~~~~l~~~~~~~l~iGD~ 225 (261)
.++++.+++.|.++.....+... -..+...|. |.++.. .+. +. ..+....+..+.+..+++ ++.-|+=
T Consensus 99 ~~~i~~lk~~g~~v~~~v~s~~~-a~~a~~~Ga----D~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iP---viaaGGI 170 (307)
T TIGR03151 99 GKYIPRLKENGVKVIPVVASVAL-AKRMEKAGA----DAVIAEGMESGGHIGELTTMALVPQVVDAVSIP---VIAAGGI 170 (307)
T ss_pred HHHHHHHHHcCCEEEEEcCCHHH-HHHHHHcCC----CEEEEECcccCCCCCCCcHHHHHHHHHHHhCCC---EEEECCC
Confidence 35889999999877654333333 334455564 445432 111 11 224566778888877754 7777763
Q ss_pred c-hhhhHHHHhCCCeEEEECCC
Q 024886 226 E-KADKQGANSLGIDCWLWGID 246 (261)
Q Consensus 226 ~-~~Di~~a~~~G~~~i~v~~~ 246 (261)
. ..|+..+...|...+.+++.
T Consensus 171 ~~~~~~~~al~~GA~gV~iGt~ 192 (307)
T TIGR03151 171 ADGRGMAAAFALGAEAVQMGTR 192 (307)
T ss_pred CCHHHHHHHHHcCCCEeecchH
Confidence 1 36788888899999988776
No 349
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=38.72 E-value=2.3e+02 Score=23.48 Aligned_cols=101 Identities=9% Similarity=-0.018 Sum_probs=61.4
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCc----hHHHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEE
Q 024886 147 HGAYQSILLLKDAGVKVAVVSNFD----TRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHI 222 (261)
Q Consensus 147 ~g~~~~l~~L~~~g~~i~i~T~~~----~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~i 222 (261)
....++++.|++..-.+- +.|.- ..-+...+.+ ....|.++...+ ..-++..-+..+++..+. ++.+|
T Consensus 170 ~~~~~iv~~l~~~~~~~~-v~~TIC~aT~~RQ~a~~~L--a~~vD~miVVGg--~~SsNT~rL~eia~~~~~---~t~~I 241 (281)
T PRK12360 170 ELWEDILNVIKLKSKELV-FFNTICSATKKRQESAKEL--SKEVDVMIVIGG--KHSSNTQKLVKICEKNCP---NTFHI 241 (281)
T ss_pred HHHHHHHHHHHHhCcccc-cCCCcchhhhhHHHHHHHH--HHhCCEEEEecC--CCCccHHHHHHHHHHHCC---CEEEE
Confidence 345566667766533332 22311 1112222222 334566665443 234466667777877773 47889
Q ss_pred cCCchhhhHHHHhCCCeEEEECCCCCChHHHHHhh
Q 024886 223 GDDEKADKQGANSLGIDCWLWGIDVKTFSDVQNRI 257 (261)
Q Consensus 223 GD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~~l 257 (261)
.+ ..|+....-.|...|++..|..+++.+.+-+
T Consensus 242 e~--~~el~~~~~~~~~~VGitaGASTP~~li~eV 274 (281)
T PRK12360 242 ET--ADELDLEMLKDYKIIGITAGASTPDWIIEEV 274 (281)
T ss_pred CC--hHHCCHHHhCCCCEEEEEccCCCCHHHHHHH
Confidence 44 6999988888999999999988888776554
No 350
>COG4483 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.66 E-value=42 Score=20.73 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=20.2
Q ss_pred HHHHHHHcCCCCCcEEEEcCCchhhhHHHH
Q 024886 205 FKAALDQMSVEASRTVHIGDDEKADKQGAN 234 (261)
Q Consensus 205 ~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~ 234 (261)
.+.+++.+|+ ++++||. .-|+++..
T Consensus 7 VqQlLK~~G~----ivyfg~r-~~~iemm~ 31 (68)
T COG4483 7 VQQLLKKFGI----IVYFGKR-LYDIEMMQ 31 (68)
T ss_pred HHHHHHHCCe----eeecCCH-HHHHHHHH
Confidence 4678888887 6899996 89988865
No 351
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=37.08 E-value=55 Score=27.84 Aligned_cols=88 Identities=14% Similarity=0.174 Sum_probs=45.9
Q ss_pred HHHHC-CCeEE-EEeCCc--hHH-HHHHHhcCcccccceEEecCCCCCCCCCHHH---HHHHHHHcCCCCCcEEEEcCCc
Q 024886 155 LLKDA-GVKVA-VVSNFD--TRL-RKLLKDLNVIDLFDAVVISSEVGCEKPDPRI---FKAALDQMSVEASRTVHIGDDE 226 (261)
Q Consensus 155 ~L~~~-g~~i~-i~T~~~--~~~-~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~---~~~~~~~l~~~~~~~l~iGD~~ 226 (261)
+|++. ++.+. |+|+.. ..+ ..+.+.+++ ...+.....+.....+.-..+ +..++.+ .+|+=+++.||+
T Consensus 2 ~l~~~~~~~~~li~tG~H~~~~~g~~~~~~f~i-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~Pd~Vlv~GD~- 77 (346)
T PF02350_consen 2 ALQKDPGFELILIVTGQHLDPEMGDTFFEGFGI-PKPDYLLDSDSQSMAKSTGLAIIELADVLER--EKPDAVLVLGDR- 77 (346)
T ss_dssp HHHCSTTEEEEEEEECSS--CHHHHHHHHHTT---SEEEE--STTS-HHHHHHHHHHHHHHHHHH--HT-SEEEEETTS-
T ss_pred hhhhCCCCCEEEEEeCCCCCHHHHHHHHhhCCC-CCCCcccccccchHHHHHHHHHHHHHHHHHh--cCCCEEEEEcCC-
Confidence 34443 44444 557766 443 667777887 667777664442222222222 2333333 368889999997
Q ss_pred hhhh---HHHHhCCCeEEEECCC
Q 024886 227 KADK---QGANSLGIDCWLWGID 246 (261)
Q Consensus 227 ~~Di---~~a~~~G~~~i~v~~~ 246 (261)
..=+ .+|...+++.+++.-|
T Consensus 78 ~~~la~alaA~~~~ipv~HieaG 100 (346)
T PF02350_consen 78 NEALAAALAAFYLNIPVAHIEAG 100 (346)
T ss_dssp HHHHHHHHHHHHTT-EEEEES--
T ss_pred chHHHHHHHHHHhCCCEEEecCC
Confidence 4443 3556679999998776
No 352
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=36.78 E-value=2.6e+02 Score=24.70 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=12.3
Q ss_pred CeEEEEeCCchH-HHHHHHhc
Q 024886 161 VKVAVVSNFDTR-LRKLLKDL 180 (261)
Q Consensus 161 ~~i~i~T~~~~~-~~~~l~~~ 180 (261)
.+|+|+|+.... +..+++.+
T Consensus 130 ~~i~vits~~~aa~~D~~~~~ 150 (432)
T TIGR00237 130 KRVGVITSQTGAALADILHIL 150 (432)
T ss_pred CEEEEEeCCccHHHHHHHHHH
Confidence 478888876654 44444443
No 353
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=36.61 E-value=20 Score=23.19 Aligned_cols=16 Identities=31% Similarity=0.495 Sum_probs=13.5
Q ss_pred cEEEEccCCccccccc
Q 024886 51 DAVLLDAGGTLLQLAE 66 (261)
Q Consensus 51 k~iifD~DGTL~d~~~ 66 (261)
-.|+++-|||.++++.
T Consensus 40 ~~lvL~eDGT~Vd~Ee 55 (79)
T cd06538 40 SSLVLDEDGTGVDTEE 55 (79)
T ss_pred cEEEEecCCcEEccHH
Confidence 4599999999998764
No 354
>COG1834 N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]
Probab=36.40 E-value=1.4e+02 Score=24.51 Aligned_cols=65 Identities=14% Similarity=0.201 Sum_probs=30.3
Q ss_pred HHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCC
Q 024886 151 QSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVE 215 (261)
Q Consensus 151 ~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~ 215 (261)
++.+.+.++|+.|..+.-.+.- -.-+.+..++.---..+++...-...+.....++..++.+|++
T Consensus 42 ~lve~l~~~gv~V~ll~~~~~~Pd~VFt~D~~~v~~~~avl~r~~~p~R~gE~~~~~~~~~~lgi~ 107 (267)
T COG1834 42 ALVEALEKNGVEVHLLPPIEGLPDQVFTRDPGLVTGEGAVLARMGAPERRGEEEAIKETLESLGIP 107 (267)
T ss_pred HHHHHHHHCCCEEEEcCcccCCCcceEeccceeEecccEEEeccCChhhccCHHHHHHHHHHcCCc
Confidence 4556667777777777632211 1112222222111112222222333444555677777777764
No 355
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=36.40 E-value=50 Score=32.36 Aligned_cols=42 Identities=21% Similarity=0.450 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHcCCC--CCcEEEEcCCchhhhHHHHhCCCeEEE
Q 024886 201 DPRIFKAALDQMSVE--ASRTVHIGDDEKADKQGANSLGIDCWL 242 (261)
Q Consensus 201 ~~~~~~~~~~~l~~~--~~~~l~iGD~~~~Di~~a~~~G~~~i~ 242 (261)
-.+.|..-++.+|++ .+++-||.|++++-.-+|...||.+++
T Consensus 92 ~q~~yl~sl~~~gi~~~~~dirfved~we~p~lga~glgwevw~ 135 (1000)
T PRK14908 92 PQELYLESLKAIGIDLRDHDIRFVHDDWENPTIGAWGLGWEVWL 135 (1000)
T ss_pred HHHHHHHHHHHcCCCccccceeEeecCCCCCcccccccccEEEE
Confidence 346677888999986 478999999999999999999999854
No 356
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=35.99 E-value=2e+02 Score=23.51 Aligned_cols=68 Identities=19% Similarity=0.230 Sum_probs=44.8
Q ss_pred CCeEEEEeCCchH--H--HHHHHhcCcccccc-eEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHH
Q 024886 160 GVKVAVVSNFDTR--L--RKLLKDLNVIDLFD-AVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGAN 234 (261)
Q Consensus 160 g~~i~i~T~~~~~--~--~~~l~~~gl~~~f~-~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~ 234 (261)
-+.|+++|.++.+ + ..-++.+||. +. ..+++.. . .+ ..++.++++ +|..-+ ..|++.|.
T Consensus 36 ~VEVVllSRNspdTGlRv~nSI~hygL~--ItR~~ft~G~------~--~~-~Yl~af~v~----LFLSan-~~DV~~Ai 99 (264)
T PF06189_consen 36 LVEVVLLSRNSPDTGLRVFNSIRHYGLD--ITRAAFTGGE------S--PY-PYLKAFNVD----LFLSAN-EDDVQEAI 99 (264)
T ss_pred ceEEEEEecCCHHHHHHHHHhHHHhCCc--ceeeeecCCC------C--HH-HHHHHhCCc----eEeeCC-HHHHHHHH
Confidence 4788899976654 2 4456677775 33 3333222 1 12 246677876 677777 89999999
Q ss_pred hCCCeEEEE
Q 024886 235 SLGIDCWLW 243 (261)
Q Consensus 235 ~~G~~~i~v 243 (261)
.+|+.+..+
T Consensus 100 ~~G~~Aa~v 108 (264)
T PF06189_consen 100 DAGIPAATV 108 (264)
T ss_pred HcCCCcEEe
Confidence 999987655
No 357
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=35.48 E-value=30 Score=29.90 Aligned_cols=19 Identities=21% Similarity=0.090 Sum_probs=16.0
Q ss_pred cccccEEEEccCCcccccc
Q 024886 47 KKAYDAVLLDAGGTLLQLA 65 (261)
Q Consensus 47 ~~~~k~iifD~DGTL~d~~ 65 (261)
+.++.++.||||+||..-.
T Consensus 24 l~~i~~~GfdmDyTL~~Y~ 42 (424)
T KOG2469|consen 24 LENIGIVGFDMDYTLARYN 42 (424)
T ss_pred hhcCcEEeeccccchhhhc
Confidence 5579999999999998644
No 358
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=35.21 E-value=2.1e+02 Score=23.59 Aligned_cols=39 Identities=28% Similarity=0.279 Sum_probs=27.2
Q ss_pred eeCccHHHHHHHHHHCCC-eEEEEeCCchH--HHHHHHhcCc
Q 024886 144 HLPHGAYQSILLLKDAGV-KVAVVSNFDTR--LRKLLKDLNV 182 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~-~i~i~T~~~~~--~~~~l~~~gl 182 (261)
.+.+++.++++.+++.|+ .+.+.||+... ....+...|+
T Consensus 68 ll~~~l~~iv~~l~~~g~~~v~i~TNG~ll~~~~~~l~~~g~ 109 (302)
T TIGR02668 68 LLRKDLIEIIRRIKDYGIKDVSMTTNGILLEKLAKKLKEAGL 109 (302)
T ss_pred ccccCHHHHHHHHHhCCCceEEEEcCchHHHHHHHHHHHCCC
Confidence 456778889999988888 89999997532 2233444554
No 359
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=35.12 E-value=95 Score=23.50 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=23.5
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCch
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDT 171 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~ 171 (261)
.+.+.+.++++.+++.|+.+.+.||+..
T Consensus 74 ll~~~l~~li~~~~~~g~~v~i~TNg~~ 101 (191)
T TIGR02495 74 TLQAGLPDFLRKVRELGFEVKLDTNGSN 101 (191)
T ss_pred cCcHhHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4456788999999999999999999864
No 360
>PF13382 Adenine_deam_C: Adenine deaminase C-terminal domain; PDB: 3T8L_B 3T81_A 3NQB_A.
Probab=34.74 E-value=97 Score=23.46 Aligned_cols=37 Identities=14% Similarity=0.106 Sum_probs=24.3
Q ss_pred HHHcCCCCCcEEEEcCCchhhhHHHHhC----CCeEEEECCC
Q 024886 209 LDQMSVEASRTVHIGDDEKADKQGANSL----GIDCWLWGID 246 (261)
Q Consensus 209 ~~~l~~~~~~~l~iGD~~~~Di~~a~~~----G~~~i~v~~~ 246 (261)
+..+.-+..+++++|++ ..|+..|.+. |-+.+.+.++
T Consensus 58 AsS~ahDshniiviG~~-~~dm~~A~n~l~~~gGG~vvv~~g 98 (171)
T PF13382_consen 58 ASSVAHDSHNIIVIGTN-DEDMALAANRLIEMGGGIVVVDDG 98 (171)
T ss_dssp EES--TTT--EEEEESS-HHHHHHHHHHHHHTTSEEEEEETT
T ss_pred EEEcccCCCCEEEEECC-HHHHHHHHHHHHHhCCCEEEEECC
Confidence 33445567889999999 8999888654 6566677666
No 361
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=34.51 E-value=55 Score=22.82 Aligned_cols=27 Identities=11% Similarity=0.150 Sum_probs=22.7
Q ss_pred CccHHHHHHHHHHCCCeEEEEeCCchH
Q 024886 146 PHGAYQSILLLKDAGVKVAVVSNFDTR 172 (261)
Q Consensus 146 ~~g~~~~l~~L~~~g~~i~i~T~~~~~ 172 (261)
.+.+.++++.++++|.++..+|+....
T Consensus 60 t~~~~~~~~~a~~~g~~vi~iT~~~~s 86 (128)
T cd05014 60 TDELLNLLPHLKRRGAPIIAITGNPNS 86 (128)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 356888999999999999999986643
No 362
>PRK04302 triosephosphate isomerase; Provisional
Probab=34.27 E-value=2.3e+02 Score=22.26 Aligned_cols=108 Identities=19% Similarity=0.172 Sum_probs=59.3
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCcccccceEEecC--CCCCCC----CCHHHHHHHHHHcCC-CC
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISS--EVGCEK----PDPRIFKAALDQMSV-EA 216 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~~~~~l~~~gl~~~f~~i~~~~--~~~~~K----p~~~~~~~~~~~l~~-~~ 216 (261)
.++..+.+.++..++.|....+.+.....+.. +...+. +.+.... ..+.++ +.++..+.+.+.+.- ..
T Consensus 98 ~~~~e~~~~v~~a~~~Gl~~I~~v~~~~~~~~-~~~~~~----~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~ 172 (223)
T PRK04302 98 LTLADIEAVVERAKKLGLESVVCVNNPETSAA-AAALGP----DYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNP 172 (223)
T ss_pred cCHHHHHHHHHHHHHCCCeEEEEcCCHHHHHH-HhcCCC----CEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccC
Confidence 34456778888888899888877665444443 333331 2332211 122221 344555544333321 12
Q ss_pred CcEEEEcCC--chhhhHHHHhCCCeEEEECCCCCChHHHHHh
Q 024886 217 SRTVHIGDD--EKADKQGANSLGIDCWLWGIDVKTFSDVQNR 256 (261)
Q Consensus 217 ~~~l~iGD~--~~~Di~~a~~~G~~~i~v~~~~~~~~el~~~ 256 (261)
+-.+++|-+ ..++++.+...|...+++++..-..++....
T Consensus 173 ~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~~~~~~~~ 214 (223)
T PRK04302 173 DVKVLCGAGISTGEDVKAALELGADGVLLASGVVKAKDPEAA 214 (223)
T ss_pred CCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhCCcCHHHH
Confidence 223444542 2577888888999999998885555444443
No 363
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=34.25 E-value=34 Score=26.61 Aligned_cols=96 Identities=21% Similarity=0.333 Sum_probs=50.2
Q ss_pred eCccHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCcccccceEEecC-CCCCC-CC-CHHHHH------HHHHHcCCC
Q 024886 145 LPHGAYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISS-EVGCE-KP-DPRIFK------AALDQMSVE 215 (261)
Q Consensus 145 ~~~g~~~~l~~L~~~g~~i~i~T~~~~~~~~~l~~~gl~~~f~~i~~~~-~~~~~-Kp-~~~~~~------~~~~~l~~~ 215 (261)
..+...++++.+++.|.+.+++-|....+..+...+ +.+|.+..-. +.|.+ .+ .+..++ ....+.|.
T Consensus 90 ~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l---~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~- 165 (201)
T PF00834_consen 90 ATEDPKETIKYIKEAGIKAGIALNPETPVEELEPYL---DQVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKLIPENGL- 165 (201)
T ss_dssp GTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTG---CCSSEEEEESS-TTTSSB--HGGHHHHHHHHHHHHHHHTC-
T ss_pred chhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHh---hhcCEEEEEEecCCCCcccccHHHHHHHHHHHHHHHhcCC-
Confidence 345678999999999999999998665554333222 3456544322 22211 11 122333 33333342
Q ss_pred CCcEEEE-cCCchhhhHHHHhCCCeEEEECC
Q 024886 216 ASRTVHI-GDDEKADKQGANSLGIDCWLWGI 245 (261)
Q Consensus 216 ~~~~l~i-GD~~~~Di~~a~~~G~~~i~v~~ 245 (261)
.--+.| |-=....+....++|...+.+++
T Consensus 166 -~~~I~vDGGI~~~~~~~~~~aGad~~V~Gs 195 (201)
T PF00834_consen 166 -DFEIEVDGGINEENIKQLVEAGADIFVAGS 195 (201)
T ss_dssp -GSEEEEESSESTTTHHHHHHHT--EEEESH
T ss_pred -ceEEEEECCCCHHHHHHHHHcCCCEEEECH
Confidence 122333 22234667778889998877764
No 364
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=34.14 E-value=2.6e+02 Score=22.78 Aligned_cols=56 Identities=11% Similarity=0.229 Sum_probs=32.2
Q ss_pred HHHHHHCCCeEEEEeC-CchHHHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCC
Q 024886 153 ILLLKDAGVKVAVVSN-FDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSV 214 (261)
Q Consensus 153 l~~L~~~g~~i~i~T~-~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~ 214 (261)
-+.++++||.+.+++. .+.+.+..++.+ +...+|+++.... .++..-+..+.+. ++
T Consensus 24 e~~a~~~Gy~l~l~~t~~~~~~e~~i~~l-~~~~vDGiI~~s~----~~~~~~l~~~~~~-~i 80 (279)
T PF00532_consen 24 EQEAREHGYQLLLCNTGDDEEKEEYIELL-LQRRVDGIILASS----ENDDEELRRLIKS-GI 80 (279)
T ss_dssp HHHHHHTTCEEEEEEETTTHHHHHHHHHH-HHTTSSEEEEESS----SCTCHHHHHHHHT-TS
T ss_pred HHHHHHcCCEEEEecCCCchHHHHHHHHH-HhcCCCEEEEecc----cCChHHHHHHHHc-CC
Confidence 3556788999987754 344444566555 3445788877632 2223345555555 54
No 365
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=33.69 E-value=1.1e+02 Score=19.82 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=24.9
Q ss_pred HHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCccccc
Q 024886 150 YQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLF 186 (261)
Q Consensus 150 ~~~l~~L~~~g~~i~i~T~~~~~~~~~l~~~gl~~~f 186 (261)
.++.+.++++|..+.+. +.+..+...++..|+.+.+
T Consensus 60 ~~l~~~~~~~g~~v~i~-~~~~~~~~~l~~~gl~~~~ 95 (99)
T cd07043 60 LGAYKRARAAGGRLVLV-NVSPAVRRVLELTGLDRLF 95 (99)
T ss_pred HHHHHHHHHcCCeEEEE-cCCHHHHHHHHHhCcceee
Confidence 35566677788775555 4456788899999886554
No 366
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=33.39 E-value=1.4e+02 Score=19.62 Aligned_cols=94 Identities=20% Similarity=0.219 Sum_probs=55.1
Q ss_pred HHHHHCCC-eEEEEeCCchHHHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCc-hhhhH
Q 024886 154 LLLKDAGV-KVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDE-KADKQ 231 (261)
Q Consensus 154 ~~L~~~g~-~i~i~T~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~-~~Di~ 231 (261)
+.|+..|+ .+..+++ ...+...++... +|.++..-.... ....+..+.+.+. + +.-.++++++.. .....
T Consensus 16 ~~l~~~~~~~v~~~~~-~~~~~~~~~~~~----~d~iiid~~~~~-~~~~~~~~~i~~~-~-~~~~ii~~t~~~~~~~~~ 87 (112)
T PF00072_consen 16 KLLERAGYEEVTTASS-GEEALELLKKHP----PDLIIIDLELPD-GDGLELLEQIRQI-N-PSIPIIVVTDEDDSDEVQ 87 (112)
T ss_dssp HHHHHTTEEEEEEESS-HHHHHHHHHHST----ESEEEEESSSSS-SBHHHHHHHHHHH-T-TTSEEEEEESSTSHHHHH
T ss_pred HHHHhCCCCEEEEECC-HHHHHHHhcccC----ceEEEEEeeecc-ccccccccccccc-c-ccccEEEecCCCCHHHHH
Confidence 34456788 5554444 455555555554 677776654433 3344455555444 4 455677777542 34677
Q ss_pred HHHhCCCeEEEECCCCCChHHHHHhh
Q 024886 232 GANSLGIDCWLWGIDVKTFSDVQNRI 257 (261)
Q Consensus 232 ~a~~~G~~~i~v~~~~~~~~el~~~l 257 (261)
.+..+|+...+. . .-+.++|.+.|
T Consensus 88 ~~~~~g~~~~l~-k-p~~~~~l~~~i 111 (112)
T PF00072_consen 88 EALRAGADDYLS-K-PFSPEELRAAI 111 (112)
T ss_dssp HHHHTTESEEEE-S-SSSHHHHHHHH
T ss_pred HHHHCCCCEEEE-C-CCCHHHHHHhh
Confidence 788889887544 2 24578887765
No 367
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=33.30 E-value=1.4e+02 Score=19.49 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=22.9
Q ss_pred HHHHHHHHHHCCCe-EEEEeCCchH-HHHHHHhc
Q 024886 149 AYQSILLLKDAGVK-VAVVSNFDTR-LRKLLKDL 180 (261)
Q Consensus 149 ~~~~l~~L~~~g~~-i~i~T~~~~~-~~~~l~~~ 180 (261)
+.++++..+..|+. ++|+.+++.+ ...+++.+
T Consensus 7 L~~wl~~~~~lG~d~i~i~d~~s~D~t~~~l~~~ 40 (97)
T PF13704_consen 7 LPEWLAHHLALGVDHIYIYDDGSTDGTREILRAL 40 (97)
T ss_pred HHHHHHHHHHcCCCEEEEEECCCCccHHHHHHhC
Confidence 45667777777765 7888887765 67777776
No 368
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=33.11 E-value=3.2e+02 Score=23.58 Aligned_cols=39 Identities=28% Similarity=0.245 Sum_probs=26.1
Q ss_pred eeCccHHHHHHHHHHC-CCe-EEEEeCCch--HHHHHHHhcCc
Q 024886 144 HLPHGAYQSILLLKDA-GVK-VAVVSNFDT--RLRKLLKDLNV 182 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~-g~~-i~i~T~~~~--~~~~~l~~~gl 182 (261)
.+.+++.++++.+++. |+. +.+.||+.. +....+...|+
T Consensus 118 llr~dl~eli~~l~~~~gi~~i~itTNG~lL~~~~~~L~~aGl 160 (373)
T PLN02951 118 TLRKDIEDICLQLSSLKGLKTLAMTTNGITLSRKLPRLKEAGL 160 (373)
T ss_pred cchhhHHHHHHHHHhcCCCceEEEeeCcchHHHHHHHHHhCCC
Confidence 4567888999998885 774 888899753 22233444554
No 369
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=33.07 E-value=2e+02 Score=23.18 Aligned_cols=82 Identities=20% Similarity=0.264 Sum_probs=48.5
Q ss_pred CCCeEEEEeCCch----HHHHHHH-hc-CcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCch-hhhH
Q 024886 159 AGVKVAVVSNFDT----RLRKLLK-DL-NVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDEK-ADKQ 231 (261)
Q Consensus 159 ~g~~i~i~T~~~~----~~~~~l~-~~-gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~-~Di~ 231 (261)
.++.+.+++.+.+ +++.... .+ .+.+.| .|+.|. +...|-|..-.+++...|++ |++|||.+. .+-+
T Consensus 29 edI~vrv~gsGaKm~pe~~e~~~~~~~~~~~pdf-~I~isP--N~~~PGP~~ARE~l~~~~iP---~IvI~D~p~~k~kd 102 (276)
T PF01993_consen 29 EDIDVRVVGSGAKMGPEDVEEVVTKMLKEWDPDF-VIVISP--NAAAPGPTKAREMLSAKGIP---CIVISDAPTKKAKD 102 (276)
T ss_dssp SSEEEEEEEEET--SHHHHHHHHHHHHHHH--SE-EEEE-S---TTSHHHHHHHHHHHHSSS----EEEEEEGGGGGGHH
T ss_pred CCceEEEeccCCCCCHHHHHHHHHHHHHhhCCCE-EEEECC--CCCCCCcHHHHHHHHhCCCC---EEEEcCCCchhhHH
Confidence 3677888876442 2333222 22 344334 233333 34677888889999998986 899999842 2456
Q ss_pred HHHhCCCeEEEECCC
Q 024886 232 GANSLGIDCWLWGID 246 (261)
Q Consensus 232 ~a~~~G~~~i~v~~~ 246 (261)
.....|++.|.+...
T Consensus 103 ~l~~~g~GYIivk~D 117 (276)
T PF01993_consen 103 ALEEEGFGYIIVKAD 117 (276)
T ss_dssp HHHHTT-EEEEETTS
T ss_pred HHHhcCCcEEEEecC
Confidence 778889999887544
No 370
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=32.98 E-value=27 Score=22.56 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=13.1
Q ss_pred cEEEEccCCccccccc
Q 024886 51 DAVLLDAGGTLLQLAE 66 (261)
Q Consensus 51 k~iifD~DGTL~d~~~ 66 (261)
-.++++=|||.++++.
T Consensus 41 ~~lvL~eDGT~VddEe 56 (78)
T PF02017_consen 41 VRLVLEEDGTEVDDEE 56 (78)
T ss_dssp CEEEETTTTCBESSCH
T ss_pred cEEEEeCCCcEEccHH
Confidence 3588999999999764
No 371
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=32.76 E-value=59 Score=22.56 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=22.3
Q ss_pred CccHHHHHHHHHHCCCeEEEEeCCchH
Q 024886 146 PHGAYQSILLLKDAGVKVAVVSNFDTR 172 (261)
Q Consensus 146 ~~g~~~~l~~L~~~g~~i~i~T~~~~~ 172 (261)
.+++.+.++.+++.|.++..+|+.+..
T Consensus 59 t~e~~~~~~~a~~~g~~vi~iT~~~~s 85 (126)
T cd05008 59 TADTLAALRLAKEKGAKTVAITNVVGS 85 (126)
T ss_pred CHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 356788899999999999999987643
No 372
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=32.56 E-value=2.5e+02 Score=22.20 Aligned_cols=53 Identities=17% Similarity=0.203 Sum_probs=26.7
Q ss_pred HHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCChH-HHHHh
Q 024886 202 PRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFS-DVQNR 256 (261)
Q Consensus 202 ~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~-el~~~ 256 (261)
...+.+.+..+|....--+++||. ..++ +..-.|+.+++|+...++.. ++.+.
T Consensus 82 ~~~~~~~l~~~~~~~~vEfvvg~~-~e~~-~~~~~~iDF~vVDc~~~d~~~~vl~~ 135 (218)
T PF07279_consen 82 LSEYKKALGEAGLSDVVEFVVGEA-PEEV-MPGLKGIDFVVVDCKREDFAARVLRA 135 (218)
T ss_pred HHHHHHHHhhccccccceEEecCC-HHHH-HhhccCCCEEEEeCCchhHHHHHHHH
Confidence 345555555555542212335665 4554 23445666666666655544 44443
No 373
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=32.20 E-value=83 Score=25.05 Aligned_cols=35 Identities=40% Similarity=0.388 Sum_probs=26.6
Q ss_pred HHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcc
Q 024886 149 AYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVI 183 (261)
Q Consensus 149 ~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~ 183 (261)
+...+.+|++.|++|+.+|+.... +...-+.+|+.
T Consensus 28 A~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v~ 63 (274)
T COG3769 28 AAPVLLELKDAGVPVILCSSKTRAEMLYLQKSLGVQ 63 (274)
T ss_pred cchHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCC
Confidence 446778899999999999987755 66666667664
No 374
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=32.04 E-value=1.2e+02 Score=23.26 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=26.0
Q ss_pred HHHHHHHHCCCeEEEEeCCchHHHHHHHhcCcc
Q 024886 151 QSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVI 183 (261)
Q Consensus 151 ~~l~~L~~~g~~i~i~T~~~~~~~~~l~~~gl~ 183 (261)
.+...|...|++..++|. ...+...+.++|+.
T Consensus 107 ~l~~~L~~~g~~w~vfTa-T~~lr~~~~rlgl~ 138 (179)
T PF12261_consen 107 ALAQLLAQQGFEWVVFTA-TRQLRNLFRRLGLP 138 (179)
T ss_pred HHHHHHHHCCCCEEEEeC-CHHHHHHHHHcCCC
Confidence 344677889999999998 56678899999986
No 375
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=31.44 E-value=1.3e+02 Score=20.04 Aligned_cols=35 Identities=17% Similarity=0.309 Sum_probs=26.5
Q ss_pred HHHHHHHHCCCeEEEEeCCchHHHHHHHhcCccccc
Q 024886 151 QSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLF 186 (261)
Q Consensus 151 ~~l~~L~~~g~~i~i~T~~~~~~~~~l~~~gl~~~f 186 (261)
.+.+.++++|.++.++ +-+..+...++..|+.+.+
T Consensus 62 ~~~~~~~~~g~~l~l~-~~~~~v~~~l~~~gl~~~~ 96 (106)
T TIGR02886 62 GRYKKIKNEGGEVIVC-NVSPAVKRLFELSGLFKII 96 (106)
T ss_pred HHHHHHHHcCCEEEEE-eCCHHHHHHHHHhCCceEE
Confidence 5567778888887765 5466678889999987766
No 376
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=31.00 E-value=2.8e+02 Score=22.25 Aligned_cols=83 Identities=6% Similarity=0.052 Sum_probs=50.1
Q ss_pred eeeCccHHHHHHHHHHCC-CeEEEEeCCchHH----HHHHHhcCcccc-cceEEecCCCCCCCCCHHHHHHHHHHcCCCC
Q 024886 143 WHLPHGAYQSILLLKDAG-VKVAVVSNFDTRL----RKLLKDLNVIDL-FDAVVISSEVGCEKPDPRIFKAALDQMSVEA 216 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g-~~i~i~T~~~~~~----~~~l~~~gl~~~-f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~ 216 (261)
.+..-.+..+++.|+..| -+|+++|-...++ ..+++..|+.-. +...=..++....+-.++.+..++++..-+.
T Consensus 102 ~p~tt~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~ 181 (239)
T TIGR02990 102 TPVVTPSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPD 181 (239)
T ss_pred CCeeCHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCC
Confidence 455555666777777766 5899999877653 556666776411 1111111223355566777777777776666
Q ss_pred CcEEEEcCC
Q 024886 217 SRTVHIGDD 225 (261)
Q Consensus 217 ~~~l~iGD~ 225 (261)
.+.+++..+
T Consensus 182 aDAifisCT 190 (239)
T TIGR02990 182 ADALFLSCT 190 (239)
T ss_pred CCEEEEeCC
Confidence 677777665
No 377
>PRK00955 hypothetical protein; Provisional
Probab=30.92 E-value=3.2e+02 Score=25.58 Aligned_cols=110 Identities=18% Similarity=0.207 Sum_probs=60.7
Q ss_pred cHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCcccccceEEec-----------------------CCCCCCCCCHHH
Q 024886 148 GAYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVIS-----------------------SEVGCEKPDPRI 204 (261)
Q Consensus 148 g~~~~l~~L~~~g~~i~i~T~~~~~~~~~l~~~gl~~~f~~i~~~-----------------------~~~~~~Kp~~~~ 204 (261)
|+.-+-+.|.++|++++|+...+-.-..-+..+|-...|=.+.+. .......|+...
T Consensus 31 g~a~i~r~L~~~G~~v~ii~qp~~~~~~~~~~~g~P~l~~~vs~g~~dsmv~~yt~~~~~r~~d~ytpgg~~~~rpdra~ 110 (620)
T PRK00955 31 GTAIIGRVLEAEGFRVGIIAQPNWRDLEDFKKLGKPRLFFLVSAGNMDSMVNHYTASKKLRSKDAYSPGGKMGLRPDRAT 110 (620)
T ss_pred HHHHHHHHHHHCCCEEEEecCCCcCChHHHHhhCCCcEEEEeccccHHHHHhhcchhhhcccccccCCCCccCCCcchHH
Confidence 555555677888999999965321112233344433332221111 111223455544
Q ss_pred --HHHHHHHcCCCCCcEEEEcCCchhhh--------------HHHHhCCCeEEEECCCCCChHHHHHhhhc
Q 024886 205 --FKAALDQMSVEASRTVHIGDDEKADK--------------QGANSLGIDCWLWGIDVKTFSDVQNRILI 259 (261)
Q Consensus 205 --~~~~~~~l~~~~~~~l~iGD~~~~Di--------------~~a~~~G~~~i~v~~~~~~~~el~~~l~~ 259 (261)
|...++++. |+-.+++|--..+-- ......++..+..+.|..++.||++.+..
T Consensus 111 i~y~~~ik~~~--p~~~IvlGG~eaS~rr~~hyd~w~~~~~~siL~d~~aD~vv~GeGE~t~~eL~~~L~~ 179 (620)
T PRK00955 111 IVYCNKIKEAY--PDVPIIIGGIEASLRRFAHYDYWSDKVRRSILIDSGADLLVYGMGEKPIVEIARRLKA 179 (620)
T ss_pred HHHHHHHHHHC--CCCcEEeCChhhhccccccchhhhhhhhHHHhhccCCCEEEECCcHHHHHHHHHHHHc
Confidence 445555552 444577776422221 11235688899999999999999998853
No 378
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=30.77 E-value=2.5e+02 Score=21.55 Aligned_cols=93 Identities=17% Similarity=0.163 Sum_probs=53.2
Q ss_pred HHHHHHHHHHCCCeEEEE-eCCch--H-HHHHHHhcCcccccceEEecCC---CCCCCCCHHHHHHHHHHcCCCCCcEEE
Q 024886 149 AYQSILLLKDAGVKVAVV-SNFDT--R-LRKLLKDLNVIDLFDAVVISSE---VGCEKPDPRIFKAALDQMSVEASRTVH 221 (261)
Q Consensus 149 ~~~~l~~L~~~g~~i~i~-T~~~~--~-~~~~l~~~gl~~~f~~i~~~~~---~~~~Kp~~~~~~~~~~~l~~~~~~~l~ 221 (261)
..++++..++.|.++++. .+... + +... ..+|. |.+-.... .....+..+.+..+.+.+.. -.+.+
T Consensus 91 ~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~-~~~g~----d~v~~~pg~~~~~~~~~~~~~i~~l~~~~~~--~~i~v 163 (206)
T TIGR03128 91 IKGAVKAAKKHGKEVQVDLINVKDKVKRAKEL-KELGA----DYIGVHTGLDEQAKGQNPFEDLQTILKLVKE--ARVAV 163 (206)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCChHHHHHHH-HHcCC----CEEEEcCCcCcccCCCCCHHHHHHHHHhcCC--CcEEE
Confidence 467888889999999886 34322 2 2322 23344 22221111 11112234455666665543 23544
Q ss_pred EcCCchhhhHHHHhCCCeEEEECCCCC
Q 024886 222 IGDDEKADKQGANSLGIDCWLWGIDVK 248 (261)
Q Consensus 222 iGD~~~~Di~~a~~~G~~~i~v~~~~~ 248 (261)
.|-=...++.....+|...+.+++...
T Consensus 164 ~GGI~~~n~~~~~~~Ga~~v~vGsai~ 190 (206)
T TIGR03128 164 AGGINLDTIPDVIKLGPDIVIVGGAIT 190 (206)
T ss_pred ECCcCHHHHHHHHHcCCCEEEEeehhc
Confidence 565446789899999999988877744
No 379
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=30.45 E-value=1.3e+02 Score=26.12 Aligned_cols=81 Identities=7% Similarity=0.010 Sum_probs=51.8
Q ss_pred eCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEc
Q 024886 145 LPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIG 223 (261)
Q Consensus 145 ~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iG 223 (261)
-.|++..++..+.+- +++++.|.+... ...+++.++=...|...+..... .-+.+. |-.-+...+.+.+.+++|.
T Consensus 253 kRp~l~~fl~~ls~~-~~l~~ft~s~~~y~~~v~d~l~~~k~~~~~lfr~sc--~~~~G~-~ikDis~i~r~l~~viiId 328 (390)
T COG5190 253 KRPELDYFLGKLSKI-HELVYFTASVKRYADPVLDILDSDKVFSHRLFRESC--VSYLGV-YIKDISKIGRSLDKVIIID 328 (390)
T ss_pred CChHHHHHHhhhhhh-EEEEEEecchhhhcchHHHhccccceeehhhhcccc--eeccCc-hhhhHHhhccCCCceEEee
Confidence 468999999999887 999999998766 56677777644433322222211 112222 3335666678889999997
Q ss_pred CCchhh
Q 024886 224 DDEKAD 229 (261)
Q Consensus 224 D~~~~D 229 (261)
.++...
T Consensus 329 ~~p~SY 334 (390)
T COG5190 329 NSPASY 334 (390)
T ss_pred CChhhh
Confidence 664444
No 380
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=30.42 E-value=1.2e+02 Score=21.17 Aligned_cols=19 Identities=16% Similarity=0.039 Sum_probs=9.4
Q ss_pred HHHHHHHHHCCCeEEEEeC
Q 024886 150 YQSILLLKDAGVKVAVVSN 168 (261)
Q Consensus 150 ~~~l~~L~~~g~~i~i~T~ 168 (261)
.++++...+.+..++++|.
T Consensus 40 e~~~~~a~~~~~d~V~iS~ 58 (122)
T cd02071 40 EEIVEAAIQEDVDVIGLSS 58 (122)
T ss_pred HHHHHHHHHcCCCEEEEcc
Confidence 3444444455555555554
No 381
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=30.21 E-value=1e+02 Score=24.76 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=26.9
Q ss_pred HHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecC
Q 024886 151 QSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISS 193 (261)
Q Consensus 151 ~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~ 193 (261)
++++.....+..++++|+.... +..+++..++ ...|.++++-
T Consensus 26 ~~l~~~~~~~~~~v~~TGRs~~~~~~~~~~~~l-~~Pd~~I~sv 68 (247)
T PF05116_consen 26 ELLEQQARPEILFVYVTGRSLESVLRLLREYNL-PQPDYIITSV 68 (247)
T ss_dssp HHHHHHHCCGEEEEEE-SS-HHHHHHHHHHCT--EE-SEEEETT
T ss_pred HHHHHhhCCCceEEEECCCCHHHHHHHHHhCCC-CCCCEEEecC
Confidence 3444334556889999998876 7888888887 4568888774
No 382
>KOG3483 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.08 E-value=92 Score=19.82 Aligned_cols=45 Identities=22% Similarity=0.217 Sum_probs=36.4
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeE
Q 024886 195 VGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDC 240 (261)
Q Consensus 195 ~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~ 240 (261)
+..+-|-...+..+.+++.+++....+|-.+ .-.|..++.+|--.
T Consensus 33 vpestpftavlkfaaeefkvpaatsaiitnd-giginpaq~agnvf 77 (94)
T KOG3483|consen 33 VPESTPFTAVLKFAAEEFKVPAATSAIITND-GIGINPAQTAGNVF 77 (94)
T ss_pred CCCCCchHHHHHHHHHHccCCccceeEEecC-ccccCcccccccee
Confidence 3456777788999999999998888888777 68898998888544
No 383
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=30.02 E-value=3.2e+02 Score=22.66 Aligned_cols=26 Identities=23% Similarity=0.052 Sum_probs=19.4
Q ss_pred EEEcCCchhhhHHHHhCCCeEEEECC
Q 024886 220 VHIGDDEKADKQGANSLGIDCWLWGI 245 (261)
Q Consensus 220 l~iGD~~~~Di~~a~~~G~~~i~v~~ 245 (261)
++|+|....-..+|+..|++++.+.+
T Consensus 96 lVi~d~~~~~~~aA~~~~iP~i~i~~ 121 (321)
T TIGR00661 96 LIISDFEYSTVVAAKLLKIPVICISN 121 (321)
T ss_pred EEEECCchHHHHHHHhcCCCEEEEec
Confidence 45557655667799999999987765
No 384
>PF03603 DNA_III_psi: DNA polymerase III psi subunit; InterPro: IPR004615 DNA-directed DNA polymerase (2.7.7.7 from EC) catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The enzyme also has 3' to 5' exonuclease activity. It has a core composed of alpha, epsilon and theta chains, that associate with a tau subunit which allows the core dimerization to form the PolIII' complex. PolIII' associates with the gamma complex (gamma, delta, delta', psi and chi chains) and with the beta chain. This family is the psi subunit, the small subunit of the DNA polymerase III holoenzyme in Escherichia coli and related species, whose exact function is not known. It appears to have a narrow taxonomic distribution, being restricted to the gammaproteobacteria.; GO: 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication; PDB: 1EM8_B 3GLI_O 3SXU_B.
Probab=30.01 E-value=1.1e+02 Score=21.89 Aligned_cols=74 Identities=14% Similarity=0.227 Sum_probs=33.4
Q ss_pred HHHCCCeEEEEeCCchHHHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHh
Q 024886 156 LKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANS 235 (261)
Q Consensus 156 L~~~g~~i~i~T~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~ 235 (261)
|.+-|+..+.+... .-+.. .....+.+....++.+++..... .+ +|..+++.+++++++++++ + ...+.+...
T Consensus 9 LqeMGItqW~Lr~P-~~L~g-~~~i~lp~~~rLliVs~~~p~~~-~~-L~~dVLrsl~L~~~q~~~l-t--peq~~~L~~ 81 (128)
T PF03603_consen 9 LQEMGITQWQLRRP-EVLQG-EIAISLPESCRLLIVSDELPQLD-DP-LFQDVLRSLKLTPEQVLHL-T--PEQLAMLPE 81 (128)
T ss_dssp HHHCT--EEEES-G-GGTS---S-----TT--EEEE-SS---TT-SH-HHHHHHHHTT--GGGEEEE----CCGGGGS-T
T ss_pred HHHcCCCeEEeCCc-cccCC-CccccCcccceEEEEeCCCCCcc-Ch-HHHHHHHHcCCCHHHhhcc-C--HHHHhhCcC
Confidence 45556777776652 21111 11223445566677777654332 33 8888888888888888888 3 355555543
Q ss_pred C
Q 024886 236 L 236 (261)
Q Consensus 236 ~ 236 (261)
-
T Consensus 82 ~ 82 (128)
T PF03603_consen 82 D 82 (128)
T ss_dssp T
T ss_pred C
Confidence 3
No 385
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=29.92 E-value=74 Score=25.01 Aligned_cols=27 Identities=22% Similarity=0.166 Sum_probs=22.3
Q ss_pred eCcc-HHHHHHHHHHCCCeEEEEeCCch
Q 024886 145 LPHG-AYQSILLLKDAGVKVAVVSNFDT 171 (261)
Q Consensus 145 ~~~g-~~~~l~~L~~~g~~i~i~T~~~~ 171 (261)
+.++ +.++++.+++.|+.+++.||+..
T Consensus 51 lq~~fl~~l~~~~k~~gi~~~leTnG~~ 78 (213)
T PRK10076 51 MQAEFATRFLQRLRLWGVSCAIETAGDA 78 (213)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 3455 57899999999999999999854
No 386
>PF12345 DUF3641: Protein of unknown function (DUF3641) ; InterPro: IPR024521 This domain is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. It is found in association with an N-terminal radical_SAM domain (Pfam:PF04055 from PFAM).
Probab=29.63 E-value=24 Score=25.34 Aligned_cols=28 Identities=11% Similarity=0.019 Sum_probs=20.7
Q ss_pred ccCCCCccccccccEEEEccCCcccccc
Q 024886 38 LHSGVGKSVKKAYDAVLLDAGGTLLQLA 65 (261)
Q Consensus 38 ~~~~~~~~~~~~~k~iifD~DGTL~d~~ 65 (261)
.+++...+..|=-..|..|+||.|+|.+
T Consensus 58 ~fNp~~v~~vMCR~~iSV~wdG~lYDCD 85 (134)
T PF12345_consen 58 AFNPANVEGVMCRSQISVDWDGYLYDCD 85 (134)
T ss_pred hcCHHHHhhcccccceeECCCCeEeCCh
Confidence 3444445555666789999999999986
No 387
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=29.60 E-value=69 Score=19.14 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=16.1
Q ss_pred ccHHHHHHHHHHCCCeEEEEeC
Q 024886 147 HGAYQSILLLKDAGVKVAVVSN 168 (261)
Q Consensus 147 ~g~~~~l~~L~~~g~~i~i~T~ 168 (261)
|+-.+.|+.|.+.|.+|-|.+-
T Consensus 2 ~~~qegLr~L~~aG~~v~iM~~ 23 (55)
T PF05240_consen 2 PDYQEGLRRLCQAGAQVSIMTY 23 (55)
T ss_dssp HHHHHHHHHHHHTT-EEEE--H
T ss_pred cHHHHHHHHHHHCCCeEEecCc
Confidence 4567899999999999999875
No 388
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=29.58 E-value=3.2e+02 Score=23.22 Aligned_cols=80 Identities=19% Similarity=0.189 Sum_probs=41.3
Q ss_pred cHHHHHHHHHHC-CCeEEEEe-CCchHHHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEcCC
Q 024886 148 GAYQSILLLKDA-GVKVAVVS-NFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDD 225 (261)
Q Consensus 148 g~~~~l~~L~~~-g~~i~i~T-~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~ 225 (261)
.+.++|+.|.+. ++++.+.- |.+..-..+.+.+. .+ +.+...... ...-|..+++... ++||||
T Consensus 201 ~i~~~l~~L~~~~~~~vi~~~hn~p~~~~~i~~~l~--~~-~~v~~~~~l-----~~~~~l~ll~~a~------~vvgdS 266 (346)
T PF02350_consen 201 QILEALKALAERQNVPVIFPLHNNPRGSDIIIEKLK--KY-DNVRLIEPL-----GYEEYLSLLKNAD------LVVGDS 266 (346)
T ss_dssp HHHHHHHHHHHHTTEEEEEE--S-HHHHHHHHHHHT--T--TTEEEE---------HHHHHHHHHHES------EEEESS
T ss_pred HHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHhc--cc-CCEEEECCC-----CHHHHHHHHhcce------EEEEcC
Confidence 455677777665 55444443 44433333333332 11 233332222 2224555555544 689999
Q ss_pred chhhhH-HHHhCCCeEEEE
Q 024886 226 EKADKQ-GANSLGIDCWLW 243 (261)
Q Consensus 226 ~~~Di~-~a~~~G~~~i~v 243 (261)
. .|+ .|...|.+++-+
T Consensus 267 -s-GI~eEa~~lg~P~v~i 283 (346)
T PF02350_consen 267 -S-GIQEEAPSLGKPVVNI 283 (346)
T ss_dssp -H-HHHHHGGGGT--EEEC
T ss_pred -c-cHHHHHHHhCCeEEEe
Confidence 6 888 999999999887
No 389
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=29.54 E-value=99 Score=21.13 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=27.1
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCc
Q 024886 147 HGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNV 182 (261)
Q Consensus 147 ~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl 182 (261)
+...++.+.+++.|+.++.+|..+.+ +..+++..++
T Consensus 46 ~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~ 82 (124)
T PF00578_consen 46 PELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGL 82 (124)
T ss_dssp HHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTC
T ss_pred hHHHHHhhhhccceEEeeecccccccchhhhhhhhcc
Confidence 34556677777788999999887766 7888887774
No 390
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=29.47 E-value=1.8e+02 Score=23.50 Aligned_cols=8 Identities=0% Similarity=0.173 Sum_probs=3.8
Q ss_pred ceEEecCC
Q 024886 187 DAVVISSE 194 (261)
Q Consensus 187 ~~i~~~~~ 194 (261)
+.+|..|.
T Consensus 25 ~~iy~~D~ 32 (251)
T TIGR00067 25 HYIYVGDT 32 (251)
T ss_pred CEEEEecC
Confidence 44555543
No 391
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=29.29 E-value=4.5e+02 Score=26.48 Aligned_cols=55 Identities=13% Similarity=0.213 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHcCCCCCcEEEEcCCchhhh-HHHHhCCCeEEEECCC---------CCChHHHHHhh
Q 024886 201 DPRIFKAALDQMSVEASRTVHIGDDEKADK-QGANSLGIDCWLWGID---------VKTFSDVQNRI 257 (261)
Q Consensus 201 ~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di-~~a~~~G~~~i~v~~~---------~~~~~el~~~l 257 (261)
+...+..+++++|++-.....+ ++ ..++ +.+...|.+.|+=+.. +.+.+||.+.+
T Consensus 128 DK~~~k~~l~~~Gipvp~~~~v-~s-~~e~~~~~~~ig~PvVVKP~~g~gg~Gv~iv~~~eeL~~a~ 192 (1066)
T PRK05294 128 DRELFKEAMKKIGLPVPRSGIA-HS-MEEALEVAEEIGYPVIIRPSFTLGGTGGGIAYNEEELEEIV 192 (1066)
T ss_pred CHHHHHHHHHHCCcCCCCeeee-CC-HHHHHHHHHHcCCCeEEEcCCCCCCCCeEEECCHHHHHHHH
Confidence 3445778889999998888888 44 3454 4566778887654332 55777776654
No 392
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=28.99 E-value=1.4e+02 Score=22.31 Aligned_cols=57 Identities=18% Similarity=0.196 Sum_probs=32.9
Q ss_pred HHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHc
Q 024886 150 YQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQM 212 (261)
Q Consensus 150 ~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l 212 (261)
++.++..++.||+++.+|+.... +..+.+.+.- ..++.....|.+|.. ++..+....
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~----k~~vl~G~SGvGKSS--LiN~L~~~~ 59 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLKG----KTSVLLGQSGVGKSS--LINALLPEA 59 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTT----SEEEEECSTTSSHHH--HHHHHHTSS
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcC----CEEEEECCCCCCHHH--HHHHHHhhc
Confidence 45677778889999999886554 5555555421 233333444556544 565555543
No 393
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=28.80 E-value=4.2e+02 Score=23.57 Aligned_cols=84 Identities=11% Similarity=0.117 Sum_probs=47.7
Q ss_pred CCCeEEEEeCCchHHHHHHHhcCcccccceEEecCCCC-CCCCC------HHHHHHHHHHcCC------CCCcEEEEcCC
Q 024886 159 AGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVG-CEKPD------PRIFKAALDQMSV------EASRTVHIGDD 225 (261)
Q Consensus 159 ~g~~i~i~T~~~~~~~~~l~~~gl~~~f~~i~~~~~~~-~~Kp~------~~~~~~~~~~l~~------~~~~~l~iGD~ 225 (261)
.+..+++-|.+..++.... ..|. |.+..+.-.. ..||. .+.+..+.+..+- ..--++.||.=
T Consensus 299 ~~~iIGvStHs~eEl~~A~-~~ga----DYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI 373 (437)
T PRK12290 299 AGIRLGLSTHGYYELLRIV-QIQP----SYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI 373 (437)
T ss_pred CCCEEEEecCCHHHHHHHh-hcCC----CEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCc
Confidence 4567777776555543222 2332 3443332211 23331 2345444554420 12348999975
Q ss_pred chhhhHHHHhCCCeEEEECCCC
Q 024886 226 EKADKQGANSLGIDCWLWGIDV 247 (261)
Q Consensus 226 ~~~Di~~a~~~G~~~i~v~~~~ 247 (261)
...++.....+|...+.|-+..
T Consensus 374 ~~~Ni~~vl~aGa~GVAVVSAI 395 (437)
T PRK12290 374 DQSNAEQVWQCGVSSLAVVRAI 395 (437)
T ss_pred CHHHHHHHHHcCCCEEEEehHh
Confidence 5899999999999999887764
No 394
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=28.77 E-value=1.3e+02 Score=25.58 Aligned_cols=39 Identities=8% Similarity=0.011 Sum_probs=28.5
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCc---hHHHHHHHhcCc
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFD---TRLRKLLKDLNV 182 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~---~~~~~~l~~~gl 182 (261)
-+.|+..++++.+++.|+.+.+.||+. .+.-..+...|+
T Consensus 65 ll~~~~~~ii~~~~~~g~~~~l~TNG~ll~~e~~~~L~~~g~ 106 (358)
T TIGR02109 65 LARPDLVELVAHARRLGLYTNLITSGVGLTEARLDALADAGL 106 (358)
T ss_pred cccccHHHHHHHHHHcCCeEEEEeCCccCCHHHHHHHHhCCC
Confidence 456888999999999999999999975 223334444554
No 395
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=28.73 E-value=2.3e+02 Score=23.80 Aligned_cols=57 Identities=16% Similarity=0.320 Sum_probs=37.8
Q ss_pred HHHHHHHHHCCCeEEEEeCCchHH----HHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcC
Q 024886 150 YQSILLLKDAGVKVAVVSNFDTRL----RKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMS 213 (261)
Q Consensus 150 ~~~l~~L~~~g~~i~i~T~~~~~~----~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~ 213 (261)
++.-++|.++|++++++|=....+ +++.+..+.. ...+. ....||+. .|+.+.+.+.
T Consensus 63 KayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~~ve--v~~i~----~Dft~~~~-~ye~i~~~l~ 123 (312)
T KOG1014|consen 63 KAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYKVE--VRIIA----IDFTKGDE-VYEKLLEKLA 123 (312)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHhCcE--EEEEE----EecCCCch-hHHHHHHHhc
Confidence 567788999999999998655543 5666666632 22222 23567776 7888887774
No 396
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=28.73 E-value=27 Score=22.05 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCC
Q 024886 198 EKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLG 237 (261)
Q Consensus 198 ~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G 237 (261)
.-|-...+..+++++.+++..+..|-++ ...|...+.+|
T Consensus 25 ~apftaVlkfaAeeF~vp~~tsaiItnd-G~GInP~QTag 63 (76)
T PF03671_consen 25 EAPFTAVLKFAAEEFKVPPATSAIITND-GVGINPQQTAG 63 (76)
T ss_dssp TSBHHHHHHHHHHHTTS-SSSEEEEESS-S-EE-TTSBHH
T ss_pred CCchHHHHHHHHHHcCCCCceEEEEecC-Ccccccchhhh
Confidence 3455668889999999999999988777 56666555444
No 397
>PRK08236 hypothetical protein; Provisional
Probab=28.71 E-value=1.9e+02 Score=22.63 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=12.4
Q ss_pred eEEEEeCCchHHHHHHHhcC
Q 024886 162 KVAVVSNFDTRLRKLLKDLN 181 (261)
Q Consensus 162 ~i~i~T~~~~~~~~~l~~~g 181 (261)
+|.|+|..+.+.+.+++.++
T Consensus 3 ~i~vv~A~~~E~~~l~~~l~ 22 (212)
T PRK08236 3 RVLVVTAVPAERDAVLRGLG 22 (212)
T ss_pred eEEEEEecHHHHHHHHHhcc
Confidence 46666666666666665554
No 398
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=28.49 E-value=92 Score=21.03 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=25.3
Q ss_pred CCcEEEE-cCCchhhhHHHHhCCCeEEEECCCCCChHHHHHhh
Q 024886 216 ASRTVHI-GDDEKADKQGANSLGIDCWLWGIDVKTFSDVQNRI 257 (261)
Q Consensus 216 ~~~~l~i-GD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~~l 257 (261)
+...+++ ||. ..=+..|..+|+.++.+..+..--+++.+..
T Consensus 40 ~~~lvIt~gdR-~di~~~a~~~~i~~iIltg~~~~~~~v~~la 81 (105)
T PF07085_consen 40 PGDLVITPGDR-EDIQLAAIEAGIACIILTGGLEPSEEVLELA 81 (105)
T ss_dssp TTEEEEEETT--HHHHHHHCCTTECEEEEETT----HHHHHHH
T ss_pred CCeEEEEeCCc-HHHHHHHHHhCCCEEEEeCCCCCCHHHHHHH
Confidence 3667777 886 6777778888888877766655445555443
No 399
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=28.46 E-value=3.7e+02 Score=22.78 Aligned_cols=56 Identities=16% Similarity=0.157 Sum_probs=35.4
Q ss_pred ceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEc--CCchhhhHHHHhCCCeEEEECCC
Q 024886 187 DAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIG--DDEKADKQGANSLGIDCWLWGID 246 (261)
Q Consensus 187 ~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iG--D~~~~Di~~a~~~G~~~i~v~~~ 246 (261)
|.++.-..-+..+.-.+.++.+.+.+.. -.++.| .+ ..+.+.+.++|+..+.|+.+
T Consensus 110 d~i~~D~ahg~s~~~~~~i~~i~~~~p~---~~vi~GnV~t-~e~a~~l~~aGad~I~V~~G 167 (321)
T TIGR01306 110 EYITIDIAHGHSNSVINMIKHIKTHLPD---SFVIAGNVGT-PEAVRELENAGADATKVGIG 167 (321)
T ss_pred CEEEEeCccCchHHHHHHHHHHHHhCCC---CEEEEecCCC-HHHHHHHHHcCcCEEEECCC
Confidence 5555443344555555667777776632 235555 45 68888888899888877643
No 400
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=28.44 E-value=1.3e+02 Score=23.38 Aligned_cols=52 Identities=17% Similarity=0.090 Sum_probs=40.7
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCch-hhhHHHHh-CCCeEEEECCC
Q 024886 193 SEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDEK-ADKQGANS-LGIDCWLWGID 246 (261)
Q Consensus 193 ~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~-~Di~~a~~-~G~~~i~v~~~ 246 (261)
..+|.+| ..+++.+++.+.-...=.++-||-+. +|-+..++ .|.+.+.+.+|
T Consensus 20 Gp~GSGK--TaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG 73 (202)
T COG0378 20 GPPGSGK--TALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETG 73 (202)
T ss_pred CCCCcCH--HHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccC
Confidence 3455555 45899999998766666788889765 78888999 99999988888
No 401
>PRK00865 glutamate racemase; Provisional
Probab=28.35 E-value=1.9e+02 Score=23.39 Aligned_cols=62 Identities=15% Similarity=0.123 Sum_probs=32.4
Q ss_pred CeEEEEeCCchH---HHHHHHhcCcccccceEEecCCCC---CCCCCHHHHHHHHHH---cCCCCCcEEEEcCC
Q 024886 161 VKVAVVSNFDTR---LRKLLKDLNVIDLFDAVVISSEVG---CEKPDPRIFKAALDQ---MSVEASRTVHIGDD 225 (261)
Q Consensus 161 ~~i~i~T~~~~~---~~~~l~~~gl~~~f~~i~~~~~~~---~~Kp~~~~~~~~~~~---l~~~~~~~l~iGD~ 225 (261)
-+|+|+-++-.- ++.+.+.+. .-+.+|..|... ..|+..++...+.+. +.-..-++++|.-+
T Consensus 6 ~~IgvfDSGiGGLtvl~~i~~~lp---~~~~iY~~D~~~~PYG~ks~~~i~~~~~~~~~~L~~~g~d~iVIaCN 76 (261)
T PRK00865 6 APIGVFDSGVGGLTVLREIRRLLP---DEHIIYVGDTARFPYGEKSEEEIRERTLEIVEFLLEYGVKMLVIACN 76 (261)
T ss_pred CeEEEEECCccHHHHHHHHHHHCC---CCCEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 478888654422 456666653 346777776533 235555554443322 22223356666554
No 402
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=27.92 E-value=87 Score=21.79 Aligned_cols=27 Identities=11% Similarity=0.166 Sum_probs=22.2
Q ss_pred CccHHHHHHHHHHCCCeEEEEeCCchH
Q 024886 146 PHGAYQSILLLKDAGVKVAVVSNFDTR 172 (261)
Q Consensus 146 ~~g~~~~l~~L~~~g~~i~i~T~~~~~ 172 (261)
.+.+.+.++.+++.|.++..+|+....
T Consensus 60 t~~~~~~~~~a~~~g~~vi~iT~~~~s 86 (120)
T cd05710 60 TKETVAAAKFAKEKGATVIGLTDDEDS 86 (120)
T ss_pred ChHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 356788899999999999999986654
No 403
>PRK06856 DNA polymerase III subunit psi; Validated
Probab=27.69 E-value=1.1e+02 Score=21.96 Aligned_cols=71 Identities=13% Similarity=0.260 Sum_probs=39.6
Q ss_pred HHHCCCeEEEEeCCchHHHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHH
Q 024886 156 LKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGA 233 (261)
Q Consensus 156 L~~~g~~i~i~T~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a 233 (261)
|.+-|+.-+.+..... +... ....+.+....++.+++... -.++ +|.-+++.++++++++.++ + ...+.+.
T Consensus 8 LqemGItqW~Lr~P~~-L~g~-~~i~lp~~~rLliV~~~~~~-~~~~-L~~dVLrsl~L~~~q~~~l-t--~eq~~~L 78 (128)
T PRK06856 8 LQQLGITQWVLRRPGV-LQGE-IAISLPEHIRLVIVAEELPA-LTDP-LLQDVLRSLTLSPDQVLCL-T--PEQVAML 78 (128)
T ss_pred HHHcCCceEEecCccc-cCCC-ccccCCccceEEEEeCCCCc-ccCh-HHHHHHHHcCCCHHHeeee-C--HHHHhhC
Confidence 3445666666665221 1111 11233444555666665442 2233 7888888888888888887 3 3555444
No 404
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=27.67 E-value=88 Score=19.69 Aligned_cols=30 Identities=23% Similarity=0.471 Sum_probs=21.7
Q ss_pred cEEEEccCCccccccccHHHHHHHHHHHhC
Q 024886 51 DAVLLDAGGTLLQLAEPVEETYASIARKYG 80 (261)
Q Consensus 51 k~iifD~DGTL~d~~~~~~~~~~~~~~~~g 80 (261)
+-|.+|++|+-.-+......++..+..++|
T Consensus 18 ~~V~lDF~gv~~~~ssFl~eafg~l~~~~~ 47 (74)
T PF14213_consen 18 EKVVLDFEGVESITSSFLNEAFGQLVREFG 47 (74)
T ss_pred CeEEEECCCcccccHHHHHHHHHHHHHHcC
Confidence 349999999965555555567777777766
No 405
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=27.64 E-value=3.3e+02 Score=22.00 Aligned_cols=111 Identities=17% Similarity=0.170 Sum_probs=60.7
Q ss_pred eeeCccHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCcccccceEEecCCCCCC---------C-C-CHHHHHHHHHH
Q 024886 143 WHLPHGAYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCE---------K-P-DPRIFKAALDQ 211 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~---------K-p-~~~~~~~~~~~ 211 (261)
+...+...++.+.+.+. -++.+.|+. +.+..+.....-...+-.+.-..+...+ + | +.+.=..++++
T Consensus 111 ~~~v~s~~~a~~~l~~~-~~vllttGs-k~l~~f~~~~~~~r~~~RvLP~~~s~~g~~~~~iiam~gPfs~e~n~aL~~~ 188 (248)
T PRK08057 111 WIEVDDIEEAAEALAPF-RRVLLTTGR-QPLAHFAAILPEHRLLVRVLPPPEVLLGLPRAEIIALRGPFSLELERALLRQ 188 (248)
T ss_pred EEEECCHHHHHHHhhcc-CCEEEecCc-chHHHHhhcCCCCEEEEEECCCchhcCCCChhhEEEeeCCCCHHHHHHHHHH
Confidence 45567788888888666 466666664 3333232211101112111111110000 1 1 23455678888
Q ss_pred cCCCCCcEEEEcCCc----hhhhHHHHhCCCeEEEECCCC--------CChHHHHHhhh
Q 024886 212 MSVEASRTVHIGDDE----KADKQGANSLGIDCWLWGIDV--------KTFSDVQNRIL 258 (261)
Q Consensus 212 l~~~~~~~l~iGD~~----~~Di~~a~~~G~~~i~v~~~~--------~~~~el~~~l~ 258 (261)
++++ +++-=||- ..=+++|++.|++.+.+.++. .+++++.+++.
T Consensus 189 ~~i~---~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~~~~~~~~~~~~~e~~~~l~ 244 (248)
T PRK08057 189 HRID---VVVTKNSGGAGTEAKLEAARELGIPVVMIARPALPYADREFEDVAELVAWLR 244 (248)
T ss_pred cCCC---EEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCHHHHHHHHH
Confidence 8875 44443431 345789999999999998773 46677777664
No 406
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=27.55 E-value=3.2e+02 Score=21.81 Aligned_cols=95 Identities=16% Similarity=0.281 Sum_probs=50.8
Q ss_pred cHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHH------HcCCCCCcEEE
Q 024886 148 GAYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALD------QMSVEASRTVH 221 (261)
Q Consensus 148 g~~~~l~~L~~~g~~i~i~T~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~------~l~~~~~~~l~ 221 (261)
...++++.+++.|.+.+++-|....+..+...+...+++-......+.+..+=.+..++.+.+ +.+. +-.+-
T Consensus 96 ~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~--~~~Ie 173 (229)
T PRK09722 96 QAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGL--EYLIE 173 (229)
T ss_pred hHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCC--CeEEE
Confidence 466889999999999999998665543333333221222111111222222223334443333 2222 22244
Q ss_pred EcCCc--hhhhHHHHhCCCeEEEECC
Q 024886 222 IGDDE--KADKQGANSLGIDCWLWGI 245 (261)
Q Consensus 222 iGD~~--~~Di~~a~~~G~~~i~v~~ 245 (261)
| |.- ...+....++|...+.+++
T Consensus 174 V-DGGI~~~~i~~~~~aGad~~V~Gs 198 (229)
T PRK09722 174 V-DGSCNQKTYEKLMEAGADVFIVGT 198 (229)
T ss_pred E-ECCCCHHHHHHHHHcCCCEEEECh
Confidence 5 542 3456667889999887774
No 407
>PRK11508 sulfur transfer protein TusE; Provisional
Probab=27.49 E-value=2.2e+02 Score=19.81 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=26.3
Q ss_pred cEEEEccCCccccccccHHHHHHHHHHHhCCCCCHHH
Q 024886 51 DAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSAD 87 (261)
Q Consensus 51 k~iifD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~ 87 (261)
+.|-+|=+|=|+|...=..+....++++.|+.++.+.
T Consensus 7 ~~ie~D~eGfL~~~~dW~e~vA~~lA~~egieLT~~H 43 (109)
T PRK11508 7 KEIETDTEGYLKESSQWSEPLAVVIAENEGISLSPEH 43 (109)
T ss_pred EEeeeCCCCCcCChHHCCHHHHHHHHHHhCCCCCHHH
Confidence 3588899999998654334456666667788887764
No 408
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=27.40 E-value=73 Score=19.93 Aligned_cols=20 Identities=35% Similarity=0.524 Sum_probs=13.6
Q ss_pred HHHHHHHcCCCCCcEEEEcC
Q 024886 205 FKAALDQMSVEASRTVHIGD 224 (261)
Q Consensus 205 ~~~~~~~l~~~~~~~l~iGD 224 (261)
+..++++.|+.+-+++.|||
T Consensus 45 v~~~L~~~G~~~GD~V~Ig~ 64 (69)
T PF09269_consen 45 VEKALRKAGAKEGDTVRIGD 64 (69)
T ss_dssp HHHHHHTTT--TT-EEEETT
T ss_pred HHHHHHHcCCCCCCEEEEcC
Confidence 44567788999999999998
No 409
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=27.33 E-value=3.1e+02 Score=21.56 Aligned_cols=45 Identities=18% Similarity=0.122 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHcCCCCCcEEEEcCCc-hhhhHH-HHhCCCeEEEECCC
Q 024886 199 KPDPRIFKAALDQMSVEASRTVHIGDDE-KADKQG-ANSLGIDCWLWGID 246 (261)
Q Consensus 199 Kp~~~~~~~~~~~l~~~~~~~l~iGD~~-~~Di~~-a~~~G~~~i~v~~~ 246 (261)
-++.+.+..+.+..+++ +++.|+-. ..|+.. +...|+..+.+++.
T Consensus 183 g~~~~~~~~i~~~~~ip---via~GGi~s~~di~~~l~~~gadgV~vg~a 229 (232)
T TIGR03572 183 GYDLELIKTVSDAVSIP---VIALGGAGSLDDLVEVALEAGASAVAAASL 229 (232)
T ss_pred CCCHHHHHHHHhhCCCC---EEEECCCCCHHHHHHHHHHcCCCEEEEehh
Confidence 35677888888876653 88888532 467777 78899999888764
No 410
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=27.32 E-value=2e+02 Score=29.13 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=18.7
Q ss_pred HHHHHHHHHHCCCeEEEEeCCchH
Q 024886 149 AYQSILLLKDAGVKVAVVSNFDTR 172 (261)
Q Consensus 149 ~~~~l~~L~~~g~~i~i~T~~~~~ 172 (261)
+-.+|..|++.|++|-|+|-.-+-
T Consensus 688 LDKLL~rLk~~GHrVLIFSQMVRm 711 (1373)
T KOG0384|consen 688 LDKLLPRLKEGGHRVLIFSQMVRM 711 (1373)
T ss_pred HHHHHHHHhcCCceEEEhHHHHHH
Confidence 346788889999999999875443
No 411
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=27.23 E-value=2.9e+02 Score=21.18 Aligned_cols=73 Identities=19% Similarity=0.211 Sum_probs=36.5
Q ss_pred HHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCcc----------------------cccceEEecCCCCCCCCCHHHHHH
Q 024886 150 YQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVI----------------------DLFDAVVISSEVGCEKPDPRIFKA 207 (261)
Q Consensus 150 ~~~l~~L~~~g~~i~i~T~~~~~~~~~l~~~gl~----------------------~~f~~i~~~~~~~~~Kp~~~~~~~ 207 (261)
..+.+.+...|+++.+++-.......+-+..|+. .-.+ ++..|+. +.=....+..
T Consensus 36 ~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~-vliVDEa--smv~~~~~~~ 112 (196)
T PF13604_consen 36 KALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKD-VLIVDEA--SMVDSRQLAR 112 (196)
T ss_dssp HHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTS-EEEESSG--GG-BHHHHHH
T ss_pred HHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCccc-EEEEecc--cccCHHHHHH
Confidence 3455666777888888877655444444443321 0012 2233332 2224446777
Q ss_pred HHHHcCCCCCcEEEEcCC
Q 024886 208 ALDQMSVEASRTVHIGDD 225 (261)
Q Consensus 208 ~~~~l~~~~~~~l~iGD~ 225 (261)
+++...-...+++++||.
T Consensus 113 ll~~~~~~~~klilvGD~ 130 (196)
T PF13604_consen 113 LLRLAKKSGAKLILVGDP 130 (196)
T ss_dssp HHHHS-T-T-EEEEEE-T
T ss_pred HHHHHHhcCCEEEEECCc
Confidence 777776666789999996
No 412
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=27.06 E-value=3.1e+02 Score=21.51 Aligned_cols=75 Identities=17% Similarity=0.281 Sum_probs=40.6
Q ss_pred HHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCcccccceEEecCC-----CCCCCCCHHHHHHHHHHcCCCCCcEEEEcC
Q 024886 150 YQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSE-----VGCEKPDPRIFKAALDQMSVEASRTVHIGD 224 (261)
Q Consensus 150 ~~~l~~L~~~g~~i~i~T~~~~~~~~~l~~~gl~~~f~~i~~~~~-----~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD 224 (261)
.+.++.+++.+.+++.+.+........ +...-|.|+..+. .|..- ..-.|..+++++|++++ ++..|+
T Consensus 68 ~~~i~~~~~~~kpVia~~~~~~sggy~-----lasaad~I~a~p~~~vg~iGv~~-~~~~~~~ll~klGv~~~-~~~~G~ 140 (222)
T cd07018 68 RQALERFRASGKPVIAYADGYSQGQYY-----LASAADEIYLNPSGSVELTGLSA-ETLFFKGLLDKLGVEVQ-VFRVGE 140 (222)
T ss_pred HHHHHHHHHhCCeEEEEeCCCCchhhh-----hhhhCCEEEECCCceEEeeccch-hhhhHHHHHHHcCCcEE-EEEEec
Confidence 456666776777777765532211111 2222355555442 22222 22258889999999854 777887
Q ss_pred CchhhhHH
Q 024886 225 DEKADKQG 232 (261)
Q Consensus 225 ~~~~Di~~ 232 (261)
- ....+.
T Consensus 141 ~-K~~~~~ 147 (222)
T cd07018 141 Y-KSAVEP 147 (222)
T ss_pred c-ccccch
Confidence 4 443333
No 413
>PF09895 DUF2122: RecB-family nuclease (DUF2122); InterPro: IPR018665 This family of archaeal proteins include RecB nuclease-like proteins as well as proteins of no known function.
Probab=27.03 E-value=2e+02 Score=19.90 Aligned_cols=57 Identities=23% Similarity=0.182 Sum_probs=36.3
Q ss_pred CCceeeCccHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCcccccceEEecCCCCCCC
Q 024886 140 GEAWHLPHGAYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEK 199 (261)
Q Consensus 140 ~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~K 199 (261)
..+.-.+|++.++++.|+-. .++.+|........ ++.+......=.+|++.+.+..|
T Consensus 19 gk~livlpdl~DAiEvl~p~--~V~~i~~~~~~~~~-~~~~~~~~rvllVf~G~d~gfsk 75 (106)
T PF09895_consen 19 GKSLIVLPDLKDAIEVLKPD--VVYLISRSGEEEEK-LEFLKIEGRVLLVFSGSDPGFSK 75 (106)
T ss_pred CCcEEEeCCHHHHHHhcCCc--EEEEEcCccccccc-ccccCcCCcEEEEEeCCCCCCCh
Confidence 33467889999999999865 88999886655322 23333333334566666655544
No 414
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=26.89 E-value=84 Score=19.89 Aligned_cols=22 Identities=14% Similarity=0.336 Sum_probs=19.3
Q ss_pred CccHHHHHHHHHHCCCeEEEEe
Q 024886 146 PHGAYQSILLLKDAGVKVAVVS 167 (261)
Q Consensus 146 ~~g~~~~l~~L~~~g~~i~i~T 167 (261)
.+.+.++++.++++|.++..+|
T Consensus 60 t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 60 TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CHHHHHHHHHHHHcCCeEEEEe
Confidence 3668889999999999999988
No 415
>smart00455 RBD Raf-like Ras-binding domain.
Probab=26.63 E-value=68 Score=20.11 Aligned_cols=28 Identities=18% Similarity=0.058 Sum_probs=24.6
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCcEEEE
Q 024886 195 VGCEKPDPRIFKAALDQMSVEASRTVHI 222 (261)
Q Consensus 195 ~~~~Kp~~~~~~~~~~~l~~~~~~~l~i 222 (261)
+..+++-.++++.++++.|++|+++.++
T Consensus 16 vrpg~tl~e~L~~~~~kr~l~~~~~~v~ 43 (70)
T smart00455 16 VRPGKTVRDALAKALKKRGLNPECCVVR 43 (70)
T ss_pred ECCCCCHHHHHHHHHHHcCCCHHHEEEE
Confidence 4567888899999999999999998888
No 416
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=26.62 E-value=96 Score=25.67 Aligned_cols=50 Identities=22% Similarity=0.179 Sum_probs=35.6
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHH------hCCCeEEEECCC
Q 024886 196 GCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGAN------SLGIDCWLWGID 246 (261)
Q Consensus 196 ~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~------~~G~~~i~v~~~ 246 (261)
...-|.++.|..+++.+||+.++++++=|+ .+..-+++ -+|..-|.+-+|
T Consensus 69 ~~~lp~~e~fa~~~~~~GI~~d~tVVvYdd-~~~~~A~ra~W~l~~~Gh~~V~iLdG 124 (285)
T COG2897 69 PHMLPSPEQFAKLLGELGIRNDDTVVVYDD-GGGFFAARAWWLLRYLGHENVRILDG 124 (285)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCEEEEECC-CCCeehHHHHHHHHHcCCCceEEecC
Confidence 356788899999999999988777777676 56665554 457766555444
No 417
>PRK06100 DNA polymerase III subunit psi; Provisional
Probab=26.36 E-value=1.5e+02 Score=21.40 Aligned_cols=52 Identities=13% Similarity=0.259 Sum_probs=31.2
Q ss_pred cccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCe
Q 024886 184 DLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGID 239 (261)
Q Consensus 184 ~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~ 239 (261)
+....++.+++.. .-.++-+|..+++.+++++++|.++ + ...+.+...-+..
T Consensus 37 ~~~rLliV~~~~p-~~~~~~L~~dVLrsm~l~~~q~~~l-t--~eq~~~L~~~~~~ 88 (132)
T PRK06100 37 SDCKLLLVAPQCP-QNETALLFERILKSMQLELSQARHI-E--PEQLSQLGYHSLE 88 (132)
T ss_pred ccceEEEEcCCCC-CccchHHHHHHHHHcCCCHHHeeee-C--HHHHhhCCcCCCC
Confidence 3344555555533 2223337888888888888888887 3 4666555444443
No 418
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=26.35 E-value=3.2e+02 Score=21.36 Aligned_cols=71 Identities=15% Similarity=0.105 Sum_probs=41.8
Q ss_pred HHHHHHHHHHCCCeEEEEeCCchH--HHHHHHh-cCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCC--CcEEEEc
Q 024886 149 AYQSILLLKDAGVKVAVVSNFDTR--LRKLLKD-LNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEA--SRTVHIG 223 (261)
Q Consensus 149 ~~~~l~~L~~~g~~i~i~T~~~~~--~~~~l~~-~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~--~~~l~iG 223 (261)
++.+++.|+++ |+++|++|.-.. -...+.+ .|.. .-.+-+.... --+..+..++++++.... -+.++|+
T Consensus 30 ie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~~~~g~~--i~~v~TG~~C---H~da~m~~~ai~~l~~~~~~~Dll~iE 103 (202)
T COG0378 30 IEKTLRALKDE-YKIAVITGDIYTKEDADRLRKLPGEP--IIGVETGKGC---HLDASMNLEAIEELVLDFPDLDLLFIE 103 (202)
T ss_pred HHHHHHHHHhh-CCeEEEeceeechhhHHHHHhCCCCe--eEEeccCCcc---CCcHHHHHHHHHHHhhcCCcCCEEEEe
Confidence 34667888888 999999995422 3455555 4431 2222222222 134567778888876542 3788885
Q ss_pred CC
Q 024886 224 DD 225 (261)
Q Consensus 224 D~ 225 (261)
.-
T Consensus 104 s~ 105 (202)
T COG0378 104 SV 105 (202)
T ss_pred cC
Confidence 53
No 419
>PRK00973 glucose-6-phosphate isomerase; Provisional
Probab=26.31 E-value=4.7e+02 Score=23.33 Aligned_cols=83 Identities=17% Similarity=0.133 Sum_probs=49.7
Q ss_pred CeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHH---HHHcCC-CCCcEEEEcCCchhh--hHHH
Q 024886 161 VKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAA---LDQMSV-EASRTVHIGDDEKAD--KQGA 233 (261)
Q Consensus 161 ~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~---~~~l~~-~~~~~l~iGD~~~~D--i~~a 233 (261)
.+++++.|.+.. +..+++.+.... +-.++.|.......|.. .|..+ ++++|. ...++++|.|. ... -+.|
T Consensus 109 ~~l~~~~n~dp~~~~~~l~~l~~~~-Tl~iviSKSGtT~ET~~-~f~~~~~~l~~~g~~~~~~~vaiTd~-~~g~L~~~A 185 (446)
T PRK00973 109 PRVFVLDNVDPEKTASILDVIDLEK-TLFNVISKSGNTAETLA-NYLIIRGILEKLGLDPKKHLVFTTDP-EKGKLKKIA 185 (446)
T ss_pred ceEEEeCCCCHHHHHHHHHhCCccc-EEEEEEeCCCCCHHHHH-HHHHHHHHHHhcCccccceEEEEcCC-CccchHHHH
Confidence 357888887766 788888876543 33555555433333322 33333 244553 23468889883 222 4567
Q ss_pred HhCCCeEEEECCC
Q 024886 234 NSLGIDCWLWGID 246 (261)
Q Consensus 234 ~~~G~~~i~v~~~ 246 (261)
++-|+.++.+..+
T Consensus 186 ~~~g~~~f~ip~~ 198 (446)
T PRK00973 186 EKEGYRTLEIPEN 198 (446)
T ss_pred HHcCCcEEeeCCC
Confidence 8889988777665
No 420
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=26.30 E-value=2.2e+02 Score=27.10 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=29.9
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCc
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNV 182 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl 182 (261)
++-++++..|+.|++.|++++.+|+..-+ +..+.+..++
T Consensus 658 kLQ~dVk~tLElLRNAgikiWMLTGDKlETA~ciAkSs~L 697 (1051)
T KOG0210|consen 658 KLQDDVKPTLELLRNAGIKIWMLTGDKLETAICIAKSSRL 697 (1051)
T ss_pred HHhhhhHhHHHHHhhcCcEEEEEcCcchhheeeeehhccc
Confidence 45678889999999999999999996655 4555555554
No 421
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=26.18 E-value=1.8e+02 Score=19.39 Aligned_cols=36 Identities=14% Similarity=0.298 Sum_probs=25.1
Q ss_pred HHHHHHHHCCCeEEEEeCCchHHHHHHHhcCcccccc
Q 024886 151 QSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFD 187 (261)
Q Consensus 151 ~~l~~L~~~g~~i~i~T~~~~~~~~~l~~~gl~~~f~ 187 (261)
++.+.++++|..+.++ +.+..+...++..|+...++
T Consensus 66 ~~~~~~~~~~~~~~l~-~~~~~~~~~l~~~~l~~~~~ 101 (108)
T TIGR00377 66 GRYKQVRRVGGQLVLV-SVSPRVARLLDITGLLRIIP 101 (108)
T ss_pred HHHHHHHhcCCEEEEE-eCCHHHHHHHHHhChhheec
Confidence 4556667778776665 44666788899998876554
No 422
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=25.96 E-value=4.6e+02 Score=23.65 Aligned_cols=96 Identities=13% Similarity=0.124 Sum_probs=53.5
Q ss_pred CccHHHHHHHHHHCC--CeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCH-HHHHHHHHHcC--------
Q 024886 146 PHGAYQSILLLKDAG--VKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDP-RIFKAALDQMS-------- 213 (261)
Q Consensus 146 ~~g~~~~l~~L~~~g--~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~-~~~~~~~~~l~-------- 213 (261)
-|.+..+++.++..+ +..-.+ +.. ...+.+.+++......++.......+++.. ++.+.+.+..+
T Consensus 131 Cp~~v~~~~~~a~~~~~i~~~~i---d~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 207 (517)
T PRK15317 131 CPDVVQALNLMAVLNPNITHTMI---DGALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTGAAARAAEELN 207 (517)
T ss_pred cHHHHHHHHHHHHhCCCceEEEE---EchhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhccccccchhhcc
Confidence 477888888876652 332223 222 345555666553333333222233444443 34444443222
Q ss_pred -CCCCcEEEEcCCchhhhHHHHhC---CCeEEEECC
Q 024886 214 -VEASRTVHIGDDEKADKQGANSL---GIDCWLWGI 245 (261)
Q Consensus 214 -~~~~~~l~iGD~~~~Di~~a~~~---G~~~i~v~~ 245 (261)
...-++++||-. +..+.+|..+ |..++++..
T Consensus 208 ~~~~~dvvIIGgG-paGl~aA~~la~~G~~v~li~~ 242 (517)
T PRK15317 208 AKDPYDVLVVGGG-PAGAAAAIYAARKGIRTGIVAE 242 (517)
T ss_pred cCCCCCEEEECCC-HHHHHHHHHHHHCCCcEEEEec
Confidence 334589999998 8999988755 777776643
No 423
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=25.95 E-value=4.8e+02 Score=23.56 Aligned_cols=98 Identities=9% Similarity=0.064 Sum_probs=54.8
Q ss_pred eCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCCCCCCCCCHHHH-HHHHHH---------cC
Q 024886 145 LPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIF-KAALDQ---------MS 213 (261)
Q Consensus 145 ~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~-~~~~~~---------l~ 213 (261)
.-|.+..+++.+...+-.|. .+--+.. .....+.+++......++..+....+++....+ +.+.+. ..
T Consensus 131 ~Cp~~v~~~~~~a~~~p~i~-~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 209 (515)
T TIGR03140 131 NCPDVVQALNQMALLNPNIS-HTMIDGALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEETAGVEAASALEQ 209 (515)
T ss_pred CCHHHHHHHHHHHHhCCCce-EEEEEchhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhccCcccchhccc
Confidence 34778888888766532222 1112222 344556666653333333333334455544444 333322 22
Q ss_pred CCCCcEEEEcCCchhhhHHHHhC---CCeEEEEC
Q 024886 214 VEASRTVHIGDDEKADKQGANSL---GIDCWLWG 244 (261)
Q Consensus 214 ~~~~~~l~iGD~~~~Di~~a~~~---G~~~i~v~ 244 (261)
..+.++++||-. +..+.+|..+ |..++++.
T Consensus 210 ~~~~dVvIIGgG-pAGl~AA~~la~~G~~v~li~ 242 (515)
T TIGR03140 210 LDPYDVLVVGGG-PAGAAAAIYAARKGLRTAMVA 242 (515)
T ss_pred cCCCCEEEECCC-HHHHHHHHHHHHCCCcEEEEe
Confidence 456889999998 8999887665 77777664
No 424
>PRK01189 V-type ATP synthase subunit F; Provisional
Probab=25.88 E-value=2.2e+02 Score=19.46 Aligned_cols=67 Identities=15% Similarity=0.137 Sum_probs=40.8
Q ss_pred cHHHHHHHHHHCCCeEEEEeCCchH-HH-HHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCC
Q 024886 148 GAYQSILLLKDAGVKVAVVSNFDTR-LR-KLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEA 216 (261)
Q Consensus 148 g~~~~l~~L~~~g~~i~i~T~~~~~-~~-~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~ 216 (261)
.+.++++.|.+.++-+.++|..... +. ..++.+. ....-.++.-...+... .-.+-+++-+..|++.
T Consensus 33 ~~~~~~~~l~~~~~gII~iTE~~a~~i~~~~i~~~~-~~~~P~II~Ipipg~~~-~~~i~~~ik~aiGvd~ 101 (104)
T PRK01189 33 LVKKFLEIFNNPKCKYIFVSESTKNMFDKNTLRSLE-SSSKPLVVFIPLPGISE-EESIEEMAKRILGIDI 101 (104)
T ss_pred HHHHHHHHHhcCCeEEEEEEHHHHhhCCHHHHHHHh-ccCCCeEEEEeCCCCcc-chhHHHHHHHHhcccc
Confidence 3456778888888999999986655 43 5666665 33344555312222222 2346677777778864
No 425
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=25.82 E-value=1.1e+02 Score=24.07 Aligned_cols=37 Identities=27% Similarity=0.306 Sum_probs=27.0
Q ss_pred cHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCccc
Q 024886 148 GAYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVID 184 (261)
Q Consensus 148 g~~~~l~~L~~~g~~i~i~T~~~~~~~~~l~~~gl~~ 184 (261)
.+.+.+..+.+.|.+++|++++.......++.+|+..
T Consensus 21 ~~~~~i~~l~~~g~~vvvV~g~g~~~~~~~~~~~~~~ 57 (242)
T PF00696_consen 21 ELADDIALLSQLGIKVVVVHGGGSFTDELLEKYGIEP 57 (242)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHCTHTT
T ss_pred HHHHHHHHHHhCCCeEEEEECChhhcCchHHhccCCc
Confidence 3445555666789999999998777777777776543
No 426
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=25.78 E-value=69 Score=18.13 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=20.9
Q ss_pred HHHHHHHHHCCCeEEEEeCCchHH-HHHHH
Q 024886 150 YQSILLLKDAGVKVAVVSNFDTRL-RKLLK 178 (261)
Q Consensus 150 ~~~l~~L~~~g~~i~i~T~~~~~~-~~~l~ 178 (261)
.++.+.|++.|++.+=+|.+.+.+ ...|.
T Consensus 9 ~eL~~~L~~~G~~~gPIt~sTR~vy~kkL~ 38 (44)
T smart00540 9 AELRAELKQYGLPPGPITDTTRKLYEKKLR 38 (44)
T ss_pred HHHHHHHHHcCCCCCCcCcchHHHHHHHHH
Confidence 366778888888888888877763 44444
No 427
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=25.69 E-value=3.9e+02 Score=22.14 Aligned_cols=65 Identities=6% Similarity=0.014 Sum_probs=46.0
Q ss_pred cceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCChHHHHHhh
Q 024886 186 FDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFSDVQNRI 257 (261)
Q Consensus 186 f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~~l 257 (261)
.|.++...+ ..-++..-+..+++..|. ++++| ++ ..|+....-.|...|++..|..+.+.+.+-+
T Consensus 209 vD~miVVGg--~nSsNT~rL~ei~~~~~~---~t~~I-e~-~~el~~~~l~~~~~VGiTAGASTP~~li~eV 273 (280)
T TIGR00216 209 VDLMIVIGG--KNSSNTTRLYEIAEEHGP---PSYLI-ET-AEELPEEWLKGVKVVGITAGASTPDWIIEEV 273 (280)
T ss_pred CCEEEEECC--CCCchHHHHHHHHHHhCC---CEEEE-CC-hHHCCHHHhCCCCEEEEEecCCCCHHHHHHH
Confidence 455544332 234466667778888873 47889 44 6999988888888899988888887776544
No 428
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=25.64 E-value=1.4e+02 Score=25.68 Aligned_cols=39 Identities=13% Similarity=0.105 Sum_probs=28.2
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCc---hHHHHHHHhcCc
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFD---TRLRKLLKDLNV 182 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~---~~~~~~l~~~gl 182 (261)
.+.|++.++++.+++.|+.+.+.||+. .+.-..+...|+
T Consensus 74 ll~~~~~~il~~~~~~g~~~~i~TNG~ll~~~~~~~L~~~g~ 115 (378)
T PRK05301 74 LLRKDLEELVAHARELGLYTNLITSGVGLTEARLAALKDAGL 115 (378)
T ss_pred CCchhHHHHHHHHHHcCCcEEEECCCccCCHHHHHHHHHcCC
Confidence 456888899999998899999999975 223334555554
No 429
>PF13034 DUF3895: Protein of unknown function (DUF3895)
Probab=25.49 E-value=2e+02 Score=18.65 Aligned_cols=48 Identities=8% Similarity=-0.071 Sum_probs=31.0
Q ss_pred CCCchHHHHHHHHHHhh------CCceeeCccHHHHHHHHHHCCCeEEEEeCCc
Q 024886 123 GCTNDDYFEEVYEYYAK------GEAWHLPHGAYQSILLLKDAGVKVAVVSNFD 170 (261)
Q Consensus 123 ~~~~~~~~~~~~~~~~~------~~~~~~~~g~~~~l~~L~~~g~~i~i~T~~~ 170 (261)
.....++.+.+.+.... ++..++||.+-..|+.|..+|+-+.+-+.+.
T Consensus 18 ~Isa~elcE~LI~~~~~~~~rysTgKpkiY~~Vc~yLe~L~~eg~l~~i~~~~~ 71 (78)
T PF13034_consen 18 EISARELCEYLIENGGSPNKRYSTGKPKIYPYVCNYLEYLVKEGKLSFIENDGT 71 (78)
T ss_pred cccHHHHHHHHHHcCCCccccccCCCceeHHHHHHHHHHHHHCCeEEEEecCcc
Confidence 33444555555544322 3446889999999999999987555554433
No 430
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=25.39 E-value=4.1e+02 Score=22.33 Aligned_cols=40 Identities=15% Similarity=0.094 Sum_probs=27.2
Q ss_pred eeCccHHHHHHHHHHCCC--eEEEEeCCchH--HHHHHHhcCcc
Q 024886 144 HLPHGAYQSILLLKDAGV--KVAVVSNFDTR--LRKLLKDLNVI 183 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~--~i~i~T~~~~~--~~~~l~~~gl~ 183 (261)
-+.++..++++.+++.+. .+.+.||+..- ....+...|+.
T Consensus 73 llr~dl~~li~~i~~~~~l~~i~itTNG~ll~~~~~~L~~aGl~ 116 (329)
T PRK13361 73 LVRRGCDQLVARLGKLPGLEELSLTTNGSRLARFAAELADAGLK 116 (329)
T ss_pred CccccHHHHHHHHHhCCCCceEEEEeChhHHHHHHHHHHHcCCC
Confidence 456788899999988753 68899997632 33445555653
No 431
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=25.22 E-value=93 Score=23.34 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=22.3
Q ss_pred CccHHHHHHHHHHCCCeEEEEeCCchH
Q 024886 146 PHGAYQSILLLKDAGVKVAVVSNFDTR 172 (261)
Q Consensus 146 ~~g~~~~l~~L~~~g~~i~i~T~~~~~ 172 (261)
.+.+.++++.++++|.++..+|+....
T Consensus 85 t~~~i~~~~~ak~~g~~ii~IT~~~~s 111 (179)
T TIGR03127 85 TESLVTVAKKAKEIGATVAAITTNPES 111 (179)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 356788889999999999999986644
No 432
>COG3655 Predicted transcriptional regulator [Transcription]
Probab=25.21 E-value=95 Score=19.79 Aligned_cols=24 Identities=4% Similarity=0.063 Sum_probs=20.5
Q ss_pred HHHHHHHHHHcCCCCCcEEEEcCC
Q 024886 202 PRIFKAALDQMSVEASRTVHIGDD 225 (261)
Q Consensus 202 ~~~~~~~~~~l~~~~~~~l~iGD~ 225 (261)
.+.++.+|+.|.+.|.+++-+-++
T Consensus 45 ~~tL~~iC~~LeCqpgDiley~~d 68 (73)
T COG3655 45 LSTLEKICKALECQPGDILEYVPD 68 (73)
T ss_pred HHHHHHHHHHcCCChhheeEEecC
Confidence 356899999999999999998555
No 433
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region [].; GO: 0003824 catalytic activity; PDB: 2OO0_A 2ON3_A 1D7K_B 3VAB_A 2J66_A 3C5Q_A 2QGH_A 1TWI_B 1TUF_A 3N2O_A ....
Probab=25.18 E-value=1.5e+02 Score=23.68 Aligned_cols=10 Identities=20% Similarity=0.508 Sum_probs=4.9
Q ss_pred HHHHHHHHCC
Q 024886 151 QSILLLKDAG 160 (261)
Q Consensus 151 ~~l~~L~~~g 160 (261)
.+|+.+++.|
T Consensus 34 ~vl~~l~~~g 43 (251)
T PF02784_consen 34 AVLKILAEEG 43 (251)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 3445555555
No 434
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.04 E-value=3.5e+02 Score=21.42 Aligned_cols=93 Identities=10% Similarity=0.162 Sum_probs=49.4
Q ss_pred HHHHHHHhhCCceeeCccHHHHHHHHHHCC-CeEEEEeCCchHH----HHHHHhcCccc-ccceEEecCCCCCCCCCHHH
Q 024886 131 EEVYEYYAKGEAWHLPHGAYQSILLLKDAG-VKVAVVSNFDTRL----RKLLKDLNVID-LFDAVVISSEVGCEKPDPRI 204 (261)
Q Consensus 131 ~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g-~~i~i~T~~~~~~----~~~l~~~gl~~-~f~~i~~~~~~~~~Kp~~~~ 204 (261)
.++.+..++....+..--.-..++.|+..| -++.++|-...++ ..+++..|++- .|.+.=..++...++-.|..
T Consensus 88 ~ei~~~ie~~~~v~vvTts~Avv~aL~al~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~~~Lgi~dn~eigr~~P~~ 167 (238)
T COG3473 88 KEIAQRIEEAKGVPVVTTSTAVVEALNALGAQRISVLTPYIDEVNQREIEFLEANGFEIVDFKGLGITDNLEIGRQEPWA 167 (238)
T ss_pred HHHHHHHHhccCCceeechHHHHHHHHhhCcceEEEeccchhhhhhHHHHHHHhCCeEEEEeeccCCcccchhcccChHH
Confidence 333444443333343333333444444433 3788888765443 56677777640 11112122455566666666
Q ss_pred HHHHHHHcCCCCCcEEEEc
Q 024886 205 FKAALDQMSVEASRTVHIG 223 (261)
Q Consensus 205 ~~~~~~~l~~~~~~~l~iG 223 (261)
.-.+.+..-....+.+||.
T Consensus 168 ~y~lAk~~~~~~~DaiFiS 186 (238)
T COG3473 168 VYRLAKEVFTPDADAIFIS 186 (238)
T ss_pred HHHHHHHhcCCCCCeEEEE
Confidence 6666677666677788885
No 435
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=24.97 E-value=95 Score=22.95 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=30.1
Q ss_pred CccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcccccceEEecCC
Q 024886 146 PHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVIDLFDAVVISSE 194 (261)
Q Consensus 146 ~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~~~f~~i~~~~~ 194 (261)
+.++.++=+.|++.|..+.++.+...+ +..+.+..++ +.+++..+
T Consensus 52 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~V~~~~~ 97 (165)
T PF00875_consen 52 LESLADLQESLRKLGIPLLVLRGDPEEVLPELAKEYGA----TAVYFNEE 97 (165)
T ss_dssp HHHHHHHHHHHHHTTS-EEEEESSHHHHHHHHHHHHTE----SEEEEE--
T ss_pred HHHHHHHHHHHHhcCcceEEEecchHHHHHHHHHhcCc----CeeEeccc
Confidence 345666777788888999999887766 5677777774 45665544
No 436
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=24.84 E-value=4.7e+02 Score=22.85 Aligned_cols=94 Identities=15% Similarity=0.113 Sum_probs=51.6
Q ss_pred HHHHHHHHHHCCCeEEE-EeCCchHHHHHHHhcCcccccceEEecC--CCCCCCCCHHHHHHHHHHcCCCCCcEEEEcCC
Q 024886 149 AYQSILLLKDAGVKVAV-VSNFDTRLRKLLKDLNVIDLFDAVVISS--EVGCEKPDPRIFKAALDQMSVEASRTVHIGDD 225 (261)
Q Consensus 149 ~~~~l~~L~~~g~~i~i-~T~~~~~~~~~l~~~gl~~~f~~i~~~~--~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~ 225 (261)
+.++++..++.|.++++ +.|.....+ .++.+. ...|.+.... +.+...|...-+..+. +++.+ -.+.+.|-=
T Consensus 265 i~~ai~~akk~GikvgVD~lnp~tp~e-~i~~l~--~~vD~Vllht~vdp~~~~~~~~kI~~ik-k~~~~-~~I~VdGGI 339 (391)
T PRK13307 265 IEKAIHEAQKTGIYSILDMLNVEDPVK-LLESLK--VKPDVVELHRGIDEEGTEHAWGNIKEIK-KAGGK-ILVAVAGGV 339 (391)
T ss_pred HHHHHHHHHHcCCEEEEEEcCCCCHHH-HHHHhh--CCCCEEEEccccCCCcccchHHHHHHHH-HhCCC-CcEEEECCc
Confidence 56788888999999999 777442222 222221 1223332221 1221223323333333 33322 245556543
Q ss_pred chhhhHHHHhCCCeEEEECCCC
Q 024886 226 EKADKQGANSLGIDCWLWGIDV 247 (261)
Q Consensus 226 ~~~Di~~a~~~G~~~i~v~~~~ 247 (261)
...++..+..+|...+.+++..
T Consensus 340 ~~eti~~l~~aGADivVVGsaI 361 (391)
T PRK13307 340 RVENVEEALKAGADILVVGRAI 361 (391)
T ss_pred CHHHHHHHHHcCCCEEEEeHHH
Confidence 3788989999999998888773
No 437
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=24.77 E-value=1.4e+02 Score=24.08 Aligned_cols=40 Identities=15% Similarity=0.283 Sum_probs=32.6
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcc
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVI 183 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~ 183 (261)
...||-...-+.|++.|++..|+|..+.. ....++..|+.
T Consensus 71 ~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~d~l~~~g~G 111 (277)
T PRK00994 71 PAAPGPKKAREILKAAGIPCIVIGDAPGKKVKDAMEEQGLG 111 (277)
T ss_pred CCCCCchHHHHHHHhcCCCEEEEcCCCccchHHHHHhcCCc
Confidence 44678888888889999999999998865 67788888763
No 438
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=24.73 E-value=3.2e+02 Score=20.84 Aligned_cols=88 Identities=17% Similarity=0.101 Sum_probs=45.2
Q ss_pred HHHHHHHHHHC--CCeEEEEeCCchHHHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEcCC-
Q 024886 149 AYQSILLLKDA--GVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDD- 225 (261)
Q Consensus 149 ~~~~l~~L~~~--g~~i~i~T~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~- 225 (261)
+..+++.|+++ ++++.+.|..+...+...+.++ +.....+. +-..+......+++.. |+-+++++-.
T Consensus 37 ~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~--~~v~~~~~------P~D~~~~~~rfl~~~~--P~~~i~~EtEl 106 (186)
T PF04413_consen 37 ARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLP--DRVDVQYL------PLDFPWAVRRFLDHWR--PDLLIWVETEL 106 (186)
T ss_dssp HHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-G--GG-SEEE---------SSHHHHHHHHHHH----SEEEEES---
T ss_pred HHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCC--CCeEEEEe------CccCHHHHHHHHHHhC--CCEEEEEcccc
Confidence 55778888776 7888888886655444444432 22334442 2234557888888865 6777777655
Q ss_pred chhhhHHHHhCCCeEEEECCC
Q 024886 226 EKADKQGANSLGIDCWLWGID 246 (261)
Q Consensus 226 ~~~Di~~a~~~G~~~i~v~~~ 246 (261)
++|=+..+++.|++.++++-.
T Consensus 107 WPnll~~a~~~~ip~~LvNar 127 (186)
T PF04413_consen 107 WPNLLREAKRRGIPVVLVNAR 127 (186)
T ss_dssp -HHHHHH-----S-EEEEEE-
T ss_pred CHHHHHHHhhcCCCEEEEeee
Confidence 456677888889999877433
No 439
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=24.68 E-value=4.2e+02 Score=22.17 Aligned_cols=66 Identities=8% Similarity=0.043 Sum_probs=46.9
Q ss_pred ccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCChHHHHHhh
Q 024886 185 LFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFSDVQNRI 257 (261)
Q Consensus 185 ~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~~l 257 (261)
..|.++...+ ..-++..-+..+++..+. ++++|++ ..|+....-.|...|++..|..+.+.+.+-+
T Consensus 210 ~vD~miVVGg--~~SsNT~kL~~i~~~~~~---~t~~Ie~--~~el~~~~l~~~~~VGitaGASTP~~li~eV 275 (298)
T PRK01045 210 QADLVIVVGS--KNSSNSNRLREVAEEAGA---PAYLIDD--ASEIDPEWFKGVKTVGVTAGASAPEWLVQEV 275 (298)
T ss_pred hCCEEEEECC--CCCccHHHHHHHHHHHCC---CEEEECC--hHHCcHHHhcCCCEEEEEecCCCCHHHHHHH
Confidence 3565555433 234466677788888873 3788955 6999988888999999988888877666544
No 440
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=24.48 E-value=2.8e+02 Score=25.16 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCC
Q 024886 201 DPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGID 246 (261)
Q Consensus 201 ~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~ 246 (261)
+..-++..+++.+ |+ +++|+++...+ |++.|++.+.++.+
T Consensus 362 D~~ei~~~I~~~~--pd--liiGs~~er~i--a~~lgiP~~~is~P 401 (513)
T CHL00076 362 DHTEVGDMIARVE--PS--AIFGTQMERHI--GKRLDIPCGVISAP 401 (513)
T ss_pred CHHHHHHHHHhcC--CC--EEEECchhhHH--HHHhCCCEEEeecc
Confidence 3334555666654 33 78899855554 78899998777644
No 441
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=24.36 E-value=5.3e+02 Score=24.22 Aligned_cols=66 Identities=9% Similarity=0.075 Sum_probs=46.5
Q ss_pred ccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCChHHHHHhh
Q 024886 185 LFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFSDVQNRI 257 (261)
Q Consensus 185 ~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~~l 257 (261)
..|.++...+ ..-++..-+..+++..|. ++++| ++ ..|+..-.-.|...|++..|..+++.+.+-+
T Consensus 206 ~~d~~~vvGg--~~SsNt~~L~~i~~~~~~---~~~~i-e~-~~el~~~~~~~~~~vgitagaStP~~~i~~v 271 (647)
T PRK00087 206 KVDVMIVVGG--KNSSNTTKLYEICKSNCT---NTIHI-EN-AGELPEEWFKGVKIIGVTAGASTPDWIIEEV 271 (647)
T ss_pred hCCEEEEECC--CCCccHHHHHHHHHHHCC---CEEEE-CC-hHHCCHHHhCCCCEEEEEeccCCCHHHHHHH
Confidence 4566655443 234466667778888773 47889 54 6999988888889999988877777665443
No 442
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=24.30 E-value=1.1e+02 Score=19.13 Aligned_cols=20 Identities=35% Similarity=0.521 Sum_probs=17.0
Q ss_pred HHHHHHHcCCCCCcEEEEcC
Q 024886 205 FKAALDQMSVEASRTVHIGD 224 (261)
Q Consensus 205 ~~~~~~~l~~~~~~~l~iGD 224 (261)
+..++++.|+.+-+++.|||
T Consensus 45 v~~~L~~~G~~~GD~V~Ig~ 64 (69)
T TIGR03595 45 VEDALRKAGAKDGDTVRIGD 64 (69)
T ss_pred HHHHHHHcCCCCCCEEEEcc
Confidence 56678888999999999987
No 443
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=24.27 E-value=2.1e+02 Score=23.03 Aligned_cols=38 Identities=24% Similarity=0.135 Sum_probs=27.6
Q ss_pred HHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCcccccceEEe
Q 024886 150 YQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVI 191 (261)
Q Consensus 150 ~~~l~~L~~~g~~i~i~T~~~~~~~~~l~~~gl~~~f~~i~~ 191 (261)
.++++.+++.|+++++.|=++......+..+|+ |+|++
T Consensus 213 ~~~v~~~~~~g~~v~~WTVn~~~~~~~l~~~GV----dgIiT 250 (252)
T cd08574 213 AQEIREYSKANISVNLYVVNEPWLYSLLWCSGV----QSVTT 250 (252)
T ss_pred HHHHHHHHHCCCEEEEEccCCHHHHHHHHHcCC----CEEec
Confidence 478899999999999999766664445556675 55553
No 444
>KOG2826 consensus Actin-related protein Arp2/3 complex, subunit ARPC2 [Cytoskeleton]
Probab=24.14 E-value=44 Score=26.56 Aligned_cols=19 Identities=21% Similarity=0.433 Sum_probs=15.6
Q ss_pred cccccEEEEccCCcccccc
Q 024886 47 KKAYDAVLLDAGGTLLQLA 65 (261)
Q Consensus 47 ~~~~k~iifD~DGTL~d~~ 65 (261)
+..++.++-|+|||++.-.
T Consensus 28 P~sid~~vaDFDgv~yhiS 46 (301)
T KOG2826|consen 28 PESIDVTVADFDGVLYHIS 46 (301)
T ss_pred CcceeEEEeccCceEEEcc
Confidence 5568899999999998543
No 445
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=24.05 E-value=2e+02 Score=23.19 Aligned_cols=33 Identities=21% Similarity=0.171 Sum_probs=22.4
Q ss_pred HHHHHHHHHCCCeEEEEe----CCchHHHHHHHhcCc
Q 024886 150 YQSILLLKDAGVKVAVVS----NFDTRLRKLLKDLNV 182 (261)
Q Consensus 150 ~~~l~~L~~~g~~i~i~T----~~~~~~~~~l~~~gl 182 (261)
.++++.+++.|.++.+.| +.+......+..+|+
T Consensus 213 ~~~v~~~~~~Gl~v~~wT~~~~~n~~~~~~~l~~~Gv 249 (265)
T cd08564 213 EEFVKKAHENGLKVMTYFDEPVNDNEEDYKVYLELGV 249 (265)
T ss_pred HHHHHHHHHcCCEEEEecCCCCCCCHHHHHHHHHcCC
Confidence 467788888899998888 444444444556664
No 446
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=24.04 E-value=3.5e+02 Score=21.13 Aligned_cols=44 Identities=14% Similarity=0.247 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHcCCCCCcEEEEcCCc-hhhhHHHHhCC-CeEEEECCC
Q 024886 200 PDPRIFKAALDQMSVEASRTVHIGDDE-KADKQGANSLG-IDCWLWGID 246 (261)
Q Consensus 200 p~~~~~~~~~~~l~~~~~~~l~iGD~~-~~Di~~a~~~G-~~~i~v~~~ 246 (261)
++.+.+..+.+..+++ +++-|+-. ..|++.+.+.| +..+.+++.
T Consensus 177 ~d~~~i~~l~~~~~ip---via~GGi~~~~di~~~~~~g~~~gv~vg~a 222 (233)
T PRK00748 177 PNVEATRELAAAVPIP---VIASGGVSSLDDIKALKGLGAVEGVIVGRA 222 (233)
T ss_pred CCHHHHHHHHHhCCCC---EEEeCCCCCHHHHHHHHHcCCccEEEEEHH
Confidence 7788899998887643 77777421 47999999988 998888776
No 447
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=24.02 E-value=4.5e+02 Score=23.21 Aligned_cols=72 Identities=17% Similarity=0.193 Sum_probs=42.7
Q ss_pred eCCchHHHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEcCCc-hhhhHHHHhCCCeEEEECC
Q 024886 167 SNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDDE-KADKQGANSLGIDCWLWGI 245 (261)
Q Consensus 167 T~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~~-~~Di~~a~~~G~~~i~v~~ 245 (261)
.|.+..+-++|..+|.. |+.. .| .=..++..+|++|++++|.+-.. ..+|+-|...|+...-+
T Consensus 88 CN~dp~vl~~La~lG~g--fdca--------Sk----~E~~lvl~~gv~P~riIyanpcK~~s~IkyAa~~gV~~~tf-- 151 (448)
T KOG0622|consen 88 CNSDPKVLRLLASLGCG--FDCA--------SK----NELDLVLSLGVSPERIIYANPCKQVSQIKYAAKHGVSVMTF-- 151 (448)
T ss_pred eCCCHHHHHHHHHcCcc--ceec--------Ch----HHHHHHHhcCCChHHeEecCCCccHHHHHHHHHcCCeEEee--
Confidence 45556677777777753 3332 12 22345667788888888875421 36777777778776544
Q ss_pred CCCChHHHHHh
Q 024886 246 DVKTFSDVQNR 256 (261)
Q Consensus 246 ~~~~~~el~~~ 256 (261)
++..||.+.
T Consensus 152 --Dne~el~kv 160 (448)
T KOG0622|consen 152 --DNEEELEKV 160 (448)
T ss_pred --cCHHHHHHH
Confidence 344555443
No 448
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=23.98 E-value=1.1e+02 Score=21.25 Aligned_cols=26 Identities=12% Similarity=0.224 Sum_probs=21.0
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCchH
Q 024886 147 HGAYQSILLLKDAGVKVAVVSNFDTR 172 (261)
Q Consensus 147 ~g~~~~l~~L~~~g~~i~i~T~~~~~ 172 (261)
.+..+.++.+++.|.+++.+|+....
T Consensus 67 ~~~~~~~~~ak~~g~~vi~iT~~~~~ 92 (131)
T PF01380_consen 67 RELIELLRFAKERGAPVILITSNSES 92 (131)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSTTS
T ss_pred hhhhhhhHHHHhcCCeEEEEeCCCCC
Confidence 45778888899999999999976543
No 449
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=23.97 E-value=4.2e+02 Score=22.00 Aligned_cols=33 Identities=15% Similarity=0.065 Sum_probs=25.2
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh
Q 024886 147 HGAYQSILLLKDAGVKVAVVSNFDTRLRKLLKD 179 (261)
Q Consensus 147 ~g~~~~l~~L~~~g~~i~i~T~~~~~~~~~l~~ 179 (261)
.+++++++..++.|+.|+---+.+.....+++.
T Consensus 60 ~ei~ei~~yA~~~gI~vIPeid~pGH~~~~l~~ 92 (301)
T cd06565 60 EEIREIDDYAAELGIEVIPLIQTLGHLEFILKH 92 (301)
T ss_pred HHHHHHHHHHHHcCCEEEecCCCHHHHHHHHhC
Confidence 467788888888888888877777776666664
No 450
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=23.91 E-value=5.7e+02 Score=23.44 Aligned_cols=96 Identities=21% Similarity=0.230 Sum_probs=51.5
Q ss_pred ccHHHHH-HHHHHCCCeEEEEeCCchH-----HHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHH---HHcCCC-C
Q 024886 147 HGAYQSI-LLLKDAGVKVAVVSNFDTR-----LRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAAL---DQMSVE-A 216 (261)
Q Consensus 147 ~g~~~~l-~~L~~~g~~i~i~T~~~~~-----~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~---~~l~~~-~ 216 (261)
+|+.+-+ +.+++.|.++.++++.... +...++..|+. .++.++...+ ..|+ .+..+.++ .+.+.+ .
T Consensus 195 ~g~l~~l~~~l~~~g~k~~iV~d~~v~~~~~~l~~~L~~~g~~-v~~~v~p~~E--~~ks-l~~v~~~~~~l~~~~~~r~ 270 (542)
T PRK14021 195 EGAMNHLPQVLGPKPVKVALIHTQPVQRHSDRARTLLRQGGYE-VSDIVIPDAE--AGKT-IEVANGIWQRLGNEGFTRS 270 (542)
T ss_pred CChHHHHHHHHHhcCCeEEEEECccHHHHHHHHHHHHHhCCCc-eEEEEeCCCc--ccCC-HHHHHHHHHHHHhcCCCCC
Confidence 4554433 4455556778887764422 23444555552 2333322221 2232 23333333 334543 3
Q ss_pred CcEEEEcCCchhhhHHHHh----CCCeEEEECCC
Q 024886 217 SRTVHIGDDEKADKQGANS----LGIDCWLWGID 246 (261)
Q Consensus 217 ~~~l~iGD~~~~Di~~a~~----~G~~~i~v~~~ 246 (261)
+-++.||-...-|+..+.. .|++.+.|++.
T Consensus 271 D~IIAIGGGsv~D~AKfvA~~y~rGi~~i~vPTT 304 (542)
T PRK14021 271 DAIVGLGGGAATDLAGFVAATWMRGIRYVNCPTS 304 (542)
T ss_pred cEEEEEcChHHHHHHHHHHHHHHcCCCEEEeCCh
Confidence 4456688866888877766 49999988773
No 451
>TIGR03342 dsrC_tusE_dsvC sulfur relay protein, TusE/DsrC/DsvC family. Members of this protein family may be described as TusE, a partner to TusBCD in a sulfur relay system for 2-thiouridine biosynthesis, a tRNA base modification process. Other members are DsrC, a functionally similar protein in species where the sulfur relay system exists primarily for sulfur metabolism rather than tRNA base modification. Some members of this family are known explicitly as the gamma subunit of sulfite reductases.
Probab=23.74 E-value=2.6e+02 Score=19.40 Aligned_cols=37 Identities=27% Similarity=0.434 Sum_probs=26.0
Q ss_pred cEEEEccCCccccccccHHHHHHHHHHHhCCCCCHHH
Q 024886 51 DAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSAD 87 (261)
Q Consensus 51 k~iifD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~ 87 (261)
+.|-+|=+|=|.|...=..+....++++.|+.++.+.
T Consensus 6 ~~i~~D~~GfL~~~~dW~e~vA~~lA~~egieLT~~H 42 (108)
T TIGR03342 6 KEIELDEDGYLLDLDDWSEDVAEALAEEEGIELTEAH 42 (108)
T ss_pred eeeeeCCCCCcCChHHCCHHHHHHHHHHcCCCCCHHH
Confidence 4588899999998644334455666667788887764
No 452
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=23.60 E-value=91 Score=26.17 Aligned_cols=28 Identities=14% Similarity=-0.185 Sum_probs=24.4
Q ss_pred eeeCccHHHHHHHHHHCCCeEEEEeCCc
Q 024886 143 WHLPHGAYQSILLLKDAGVKVAVVSNFD 170 (261)
Q Consensus 143 ~~~~~g~~~~l~~L~~~g~~i~i~T~~~ 170 (261)
.-+.|++.++++.+++.|..+.+.||+.
T Consensus 83 PLL~pdl~eiv~~~~~~g~~v~l~TNG~ 110 (318)
T TIGR03470 83 PLLHPEIDEIVRGLVARKKFVYLCTNAL 110 (318)
T ss_pred ccccccHHHHHHHHHHcCCeEEEecCce
Confidence 3557889999999999999999999986
No 453
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=23.51 E-value=2e+02 Score=23.27 Aligned_cols=38 Identities=21% Similarity=0.109 Sum_probs=28.1
Q ss_pred HHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCcccccceEEe
Q 024886 150 YQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVI 191 (261)
Q Consensus 150 ~~~l~~L~~~g~~i~i~T~~~~~~~~~l~~~gl~~~f~~i~~ 191 (261)
.++++.+++.|.++++.|-++......+..+|+ |+|++
T Consensus 221 ~~~v~~~~~~G~~v~vWTVNd~~~~~~l~~~GV----dgIiT 258 (264)
T cd08575 221 PNLFDHLRKRGIQVYLWVLNDEEDFEEAFDLGA----DGVMT 258 (264)
T ss_pred HHHHHHHHhcCCcEEEEEECCHHHHHHHHhcCC----CEEEe
Confidence 478888999999999999766664445666774 56654
No 454
>PRK06849 hypothetical protein; Provisional
Probab=23.33 E-value=4.4e+02 Score=22.63 Aligned_cols=40 Identities=13% Similarity=0.058 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhC--CCeEEE
Q 024886 201 DPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSL--GIDCWL 242 (261)
Q Consensus 201 ~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~--G~~~i~ 242 (261)
+...+...++++|++-.+...+ ++ ..|+..+..- |.+.++
T Consensus 116 DK~~~~~~~~~~GipvP~t~~v-~~-~~~l~~~~~~~~~~P~vl 157 (389)
T PRK06849 116 NKWEFAEQARSLGLSVPKTYLI-TD-PEAIRNFMFKTPHTPYVL 157 (389)
T ss_pred CHHHHHHHHHHcCCCCCCEEEe-CC-HHHHHHHhhcCCCCcEEE
Confidence 4445777888999998888888 44 5676554332 556553
No 455
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=23.32 E-value=2.2e+02 Score=18.80 Aligned_cols=35 Identities=11% Similarity=0.145 Sum_probs=25.0
Q ss_pred HHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCccc
Q 024886 149 AYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVID 184 (261)
Q Consensus 149 ~~~~l~~L~~~g~~i~i~T~~~~~~~~~l~~~gl~~ 184 (261)
..++.+.+++.|.++.++. -...+...++..|+..
T Consensus 60 L~~l~~~~~~~g~~l~l~~-~~~~v~~~l~~~gl~~ 94 (100)
T cd06844 60 LLERSRLAEAVGGQFVLTG-ISPAVRITLTESGLDK 94 (100)
T ss_pred HHHHHHHHHHcCCEEEEEC-CCHHHHHHHHHhCchh
Confidence 3456677788888887774 4566788888888754
No 456
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=23.25 E-value=1.2e+02 Score=20.98 Aligned_cols=35 Identities=11% Similarity=0.280 Sum_probs=24.0
Q ss_pred CccHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcC
Q 024886 146 PHGAYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLN 181 (261)
Q Consensus 146 ~~g~~~~l~~L~~~g~~i~i~T~~~~~~~~~l~~~g 181 (261)
.+++.+.++.+++.|.++..+|+.. ++...-++.+
T Consensus 56 t~e~i~~~~~a~~~g~~iI~IT~~~-~l~~~~~~~~ 90 (119)
T cd05017 56 TEETLSAVEQAKERGAKIVAITSGG-KLLEMAREHG 90 (119)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCc-hHHHHHHHcC
Confidence 3567888888899999999999643 3433433333
No 457
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=23.23 E-value=1.7e+02 Score=22.74 Aligned_cols=22 Identities=5% Similarity=0.001 Sum_probs=13.3
Q ss_pred HHHHHHHHHHCCCeEEEEeCCc
Q 024886 149 AYQSILLLKDAGVKVAVVSNFD 170 (261)
Q Consensus 149 ~~~~l~~L~~~g~~i~i~T~~~ 170 (261)
+...++.|...++...|+|+..
T Consensus 31 l~~~l~~l~~~~~d~viftS~~ 52 (231)
T PF02602_consen 31 LEAALEQLPPGNYDWVIFTSPN 52 (231)
T ss_dssp HHHHHHHHTGCCSSEEEESSHH
T ss_pred HHHHHHhcccCCCCEEEEECHH
Confidence 3345555555567778887643
No 458
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=22.99 E-value=2.6e+02 Score=22.06 Aligned_cols=39 Identities=26% Similarity=0.170 Sum_probs=27.2
Q ss_pred HHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCcccccceEEe
Q 024886 149 AYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVI 191 (261)
Q Consensus 149 ~~~~l~~L~~~g~~i~i~T~~~~~~~~~l~~~gl~~~f~~i~~ 191 (261)
..++++.+++.|+++++.|=++......+..+|+ |++++
T Consensus 193 ~~~~v~~~~~~gl~v~~wTvn~~~~~~~l~~~gv----dgiiT 231 (234)
T cd08570 193 GQAFLPELKKNGKKVFVWTVNTEEDMRYAIRLGV----DGVIT 231 (234)
T ss_pred CHHHHHHHHHCCCEEEEEecCCHHHHHHHHHCCC----CEEEe
Confidence 4678899999999999999666554444445564 56554
No 459
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=22.87 E-value=3.3e+02 Score=20.40 Aligned_cols=11 Identities=27% Similarity=0.356 Sum_probs=9.0
Q ss_pred cEEEEccCCcc
Q 024886 51 DAVLLDAGGTL 61 (261)
Q Consensus 51 k~iifD~DGTL 61 (261)
=+++.|.|++.
T Consensus 25 iAvfID~~Nv~ 35 (160)
T TIGR00288 25 IGLLVDGPNML 35 (160)
T ss_pred EEEEEeCCccC
Confidence 37899999985
No 460
>PRK10765 nitroreductase A; Provisional
Probab=22.85 E-value=1.2e+02 Score=24.21 Aligned_cols=34 Identities=18% Similarity=0.144 Sum_probs=21.6
Q ss_pred hhhHHHHhCCCeEEEECCCCCChHHHHHhhhccC
Q 024886 228 ADKQGANSLGIDCWLWGIDVKTFSDVQNRILITE 261 (261)
Q Consensus 228 ~Di~~a~~~G~~~i~v~~~~~~~~el~~~l~~~~ 261 (261)
+=+-+|.+.|+++++++.-....+++.+.|..||
T Consensus 114 nl~laA~slGLGs~~ig~~~~~~~~v~~~L~LP~ 147 (240)
T PRK10765 114 NALLAAESLGLGGVYIGGLRNNIEAVTELLKLPQ 147 (240)
T ss_pred HHHHHHHHcCCCEEeeCccccCHHHHHHHhCcCC
Confidence 3445677778888777654345667777776554
No 461
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=22.75 E-value=1e+02 Score=24.99 Aligned_cols=35 Identities=17% Similarity=0.290 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhC
Q 024886 201 DPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSL 236 (261)
Q Consensus 201 ~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~ 236 (261)
+...+...+..+|++..+...|||+ ..+|..+-+.
T Consensus 22 Na~~la~~L~~~G~~v~~~~~VgD~-~~~I~~~l~~ 56 (255)
T COG1058 22 NAAFLADELTELGVDLARITTVGDN-PDRIVEALRE 56 (255)
T ss_pred hHHHHHHHHHhcCceEEEEEecCCC-HHHHHHHHHH
Confidence 5556777788889999999999998 7887665443
No 462
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=22.74 E-value=3.9e+02 Score=21.10 Aligned_cols=54 Identities=13% Similarity=0.140 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHcCCCCCcEEEEcCCc-hhhhHHHHhCCCeEEEECCC----CCChHHHHHh
Q 024886 200 PDPRIFKAALDQMSVEASRTVHIGDDE-KADKQGANSLGIDCWLWGID----VKTFSDVQNR 256 (261)
Q Consensus 200 p~~~~~~~~~~~l~~~~~~~l~iGD~~-~~Di~~a~~~G~~~i~v~~~----~~~~~el~~~ 256 (261)
++.+.+..+++..+++ +++.|+=. ..|+......|+..+.+++. ...++++.++
T Consensus 180 ~~~~~i~~i~~~~~iP---via~GGI~~~~di~~~~~~Ga~gv~vgsa~~~~~~~~~~~~~~ 238 (241)
T PRK13585 180 VNTEPVKELVDSVDIP---VIASGGVTTLDDLRALKEAGAAGVVVGSALYKGKFTLEEAIEA 238 (241)
T ss_pred CCHHHHHHHHHhCCCC---EEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhcCCcCHHHHHHH
Confidence 5667888888887654 78888754 57999999999999888766 3345555544
No 463
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=22.67 E-value=2.6e+02 Score=20.91 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=25.3
Q ss_pred HHHHHHHHHHCCCeEEEEeCCc-hHHHHHHHhcCc
Q 024886 149 AYQSILLLKDAGVKVAVVSNFD-TRLRKLLKDLNV 182 (261)
Q Consensus 149 ~~~~l~~L~~~g~~i~i~T~~~-~~~~~~l~~~gl 182 (261)
..++++.+++.|.++++.|-.+ ......+..+|+
T Consensus 138 ~~~~v~~~~~~g~~v~~wtvn~~~~~~~~l~~~Gv 172 (179)
T cd08555 138 DTELIASANKLGLLSRIWTVNDNNEIINKFLNLGV 172 (179)
T ss_pred CHHHHHHHHHCCCEEEEEeeCChHHHHHHHHHcCC
Confidence 3577888899999999999766 554445556674
No 464
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=22.62 E-value=1.1e+02 Score=21.36 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=21.0
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCchH
Q 024886 147 HGAYQSILLLKDAGVKVAVVSNFDTR 172 (261)
Q Consensus 147 ~g~~~~l~~L~~~g~~i~i~T~~~~~ 172 (261)
+.+.++++.++++|.+++++|+....
T Consensus 74 ~~~~~~~~~a~~~g~~iv~iT~~~~~ 99 (139)
T cd05013 74 KETVEAAEIAKERGAKVIAITDSANS 99 (139)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCC
Confidence 45778888899999999999986543
No 465
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=22.54 E-value=2.6e+02 Score=20.29 Aligned_cols=71 Identities=18% Similarity=0.098 Sum_probs=37.9
Q ss_pred cHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCcccccceEEecCCCCCCCCCH---HHHHHHHHHcCCCCCcEEEE
Q 024886 148 GAYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDP---RIFKAALDQMSVEASRTVHI 222 (261)
Q Consensus 148 g~~~~l~~L~~~g~~i~i~T~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~---~~~~~~~~~l~~~~~~~l~i 222 (261)
-+..++++|++.|.+..|----...-..-++.-|+. ..|.-+. .+..-|.. +-++.+.-++.-.|..|+.|
T Consensus 29 Tln~fieELkKygvttvVRVCe~TYdt~~lek~GI~-Vldw~f~---dg~ppp~qvv~~w~~l~~~~f~e~p~~cvav 102 (173)
T KOG2836|consen 29 TLNKFIEELKKYGVTTVVRVCEPTYDTTPLEKEGIT-VLDWPFD---DGAPPPNQVVDDWLSLVKTKFREEPGCCVAV 102 (173)
T ss_pred hHHHHHHHHHhcCCeEEEEecccccCCchhhhcCce-Eeecccc---cCCCCchHHHHHHHHHHHHHHhhCCCCeEEE
Confidence 456788899998876655332222223445566653 2333332 12222211 22455566677778888876
No 466
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=22.29 E-value=5e+02 Score=22.25 Aligned_cols=43 Identities=14% Similarity=0.047 Sum_probs=33.7
Q ss_pred HHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCC
Q 024886 202 PRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDV 247 (261)
Q Consensus 202 ~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~ 247 (261)
.+.+..+.+...++ ++.+|-=...++.....+|+..|.+.+..
T Consensus 283 le~l~~~~~~~~iP---v~AiGGI~~~ni~~l~~~Ga~gVAvisaI 325 (347)
T PRK02615 283 LEYLKYAAKEAPIP---WFAIGGIDKSNIPEVLQAGAKRVAVVRAI 325 (347)
T ss_pred HHHHHHHHHhCCCC---EEEECCCCHHHHHHHHHcCCcEEEEeHHH
Confidence 46677777766643 89999755899999999999998876653
No 467
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.21 E-value=3.2e+02 Score=23.30 Aligned_cols=50 Identities=12% Similarity=-0.057 Sum_probs=35.8
Q ss_pred HHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEECCCCCChHHHHHhhhc
Q 024886 207 AALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLWGIDVKTFSDVQNRILI 259 (261)
Q Consensus 207 ~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v~~~~~~~~el~~~l~~ 259 (261)
.+++.+| ..++++++= .++=++.|+..|...+.-.....+.+++++.+.+
T Consensus 187 l~Aka~G--A~~VVi~d~-~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~ 236 (354)
T KOG0024|consen 187 LVAKAMG--ASDVVITDL-VANRLELAKKFGATVTDPSSHKSSPQELAELVEK 236 (354)
T ss_pred HHHHHcC--CCcEEEeec-CHHHHHHHHHhCCeEEeeccccccHHHHHHHHHh
Confidence 4455556 577888844 4899999999999887655555567888777653
No 468
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=22.20 E-value=5.6e+02 Score=22.76 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhCCCeEEEE
Q 024886 201 DPRIFKAALDQMSVEASRTVHIGDDEKADKQGANSLGIDCWLW 243 (261)
Q Consensus 201 ~~~~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~G~~~i~v 243 (261)
++.-+...+++++.+ +++|.+ ..-..|.+.|++.+.+
T Consensus 383 d~~e~~~~i~~~~pD----l~ig~~--~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 383 NPRELLKLLLEYKAD----LLIAGG--KERYTALKLGIPFCDI 419 (456)
T ss_pred CHHHHHHHHhhcCCC----EEEEcc--chHHHHHhcCCCEEEc
Confidence 444455555555422 556664 3345666777777644
No 469
>PRK14057 epimerase; Provisional
Probab=22.16 E-value=4.4e+02 Score=21.48 Aligned_cols=98 Identities=12% Similarity=0.144 Sum_probs=52.6
Q ss_pred ccHHHHHHHHHHCCC---------eEEEEeCCchHHHHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHH------H
Q 024886 147 HGAYQSILLLKDAGV---------KVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALD------Q 211 (261)
Q Consensus 147 ~g~~~~l~~L~~~g~---------~i~i~T~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~------~ 211 (261)
+...++++.+++.|. +.+++-|....++.+...+...+++-......+.+..+=.+..++++.+ +
T Consensus 110 ~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~ 189 (254)
T PRK14057 110 IHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGD 189 (254)
T ss_pred cCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHhCCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHh
Confidence 456789999999997 5899988655544443333322222122222222222323334444433 2
Q ss_pred cCCCCCcEEEEcCC--chhhhHHHHhCCCeEEEECCCC
Q 024886 212 MSVEASRTVHIGDD--EKADKQGANSLGIDCWLWGIDV 247 (261)
Q Consensus 212 l~~~~~~~l~iGD~--~~~Di~~a~~~G~~~i~v~~~~ 247 (261)
.|. .-.+-| |. ....+.....+|...+..++..
T Consensus 190 ~~~--~~~IeV-DGGI~~~ti~~l~~aGad~~V~GSal 224 (254)
T PRK14057 190 KRE--GKIIVI-DGSLTQDQLPSLIAQGIDRVVSGSAL 224 (254)
T ss_pred cCC--CceEEE-ECCCCHHHHHHHHHCCCCEEEEChHh
Confidence 232 222444 43 2356667788999988777663
No 470
>PF07453 NUMOD1: NUMOD1 domain; InterPro: IPR010896 This helix-turn-helix-containing DNA-binding domain is found associated in homing nucleases [].
Probab=22.08 E-value=1.4e+02 Score=15.68 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=19.2
Q ss_pred cEEEEccCCccccccccHHHHHHHHHHHhCCC
Q 024886 51 DAVLLDAGGTLLQLAEPVEETYASIARKYGLN 82 (261)
Q Consensus 51 k~iifD~DGTL~d~~~~~~~~~~~~~~~~g~~ 82 (261)
++.++|+++..+..-. ...++++.+|+.
T Consensus 2 ~V~~yd~~~~~i~~F~----Si~eAa~~l~i~ 29 (37)
T PF07453_consen 2 PVYVYDLNTNEIKSFD----SIREAARYLGIS 29 (37)
T ss_pred eEEEEECCCCeEEEEc----CHHHHHHHhCCC
Confidence 5789999999975433 456666666654
No 471
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=22.02 E-value=36 Score=21.69 Aligned_cols=9 Identities=44% Similarity=0.645 Sum_probs=8.2
Q ss_pred EEccCCccc
Q 024886 54 LLDAGGTLL 62 (261)
Q Consensus 54 ifD~DGTL~ 62 (261)
=||++|.|+
T Consensus 4 RFdf~G~l~ 12 (73)
T PF08620_consen 4 RFDFDGNLL 12 (73)
T ss_pred cccCCCCEe
Confidence 499999999
No 472
>KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only]
Probab=22.00 E-value=5.2e+02 Score=22.34 Aligned_cols=32 Identities=9% Similarity=0.030 Sum_probs=25.1
Q ss_pred HHHHHHHHcCCCCCcEEEEcCCchhhhHHHHhC
Q 024886 204 IFKAALDQMSVEASRTVHIGDDEKADKQGANSL 236 (261)
Q Consensus 204 ~~~~~~~~l~~~~~~~l~iGD~~~~Di~~a~~~ 236 (261)
..+.+++.+|..+++++.+|=| .-....+..+
T Consensus 298 VvQfAI~~Lgf~~edIilygWS-IGGF~~~waA 329 (517)
T KOG1553|consen 298 VVQFAIQVLGFRQEDIILYGWS-IGGFPVAWAA 329 (517)
T ss_pred HHHHHHHHcCCCccceEEEEee-cCCchHHHHh
Confidence 3688899999999999999877 5666555544
No 473
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=21.99 E-value=3.4e+02 Score=20.18 Aligned_cols=47 Identities=23% Similarity=0.174 Sum_probs=26.9
Q ss_pred CccHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCcc-cccceEEecC
Q 024886 146 PHGAYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVI-DLFDAVVISS 193 (261)
Q Consensus 146 ~~g~~~~l~~L~~~g~~i~i~T~~~~~~~~~l~~~gl~-~~f~~i~~~~ 193 (261)
...+.++|+.++++|.+|++.-++..- ..++..+|+. ..++.++-.+
T Consensus 54 ~~~l~~~L~~~~~~gk~I~~yGA~~kg-~tlln~~g~~~~~I~~vvD~n 101 (160)
T PF08484_consen 54 KAELREFLEKLKAEGKRIAGYGAGAKG-NTLLNYFGLDNDLIDYVVDDN 101 (160)
T ss_dssp HHHHHHHHHHHHHTT--EEEE---SHH-HHHHHHHT--TTTS--EEES-
T ss_pred HHHHHHHHHHHHHcCCEEEEECcchHH-HHHHHHhCCCcceeEEEEeCC
Confidence 345778999999999999999775544 4567777873 4577776543
No 474
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=21.95 E-value=4.7e+02 Score=21.75 Aligned_cols=101 Identities=17% Similarity=0.157 Sum_probs=61.7
Q ss_pred cHHHHHHHHHHCCCeEEEEe-CCchHHHHHHHhcCcccccceEEecCCCC----C-CCCCHHHHHHHHHHcCCCCCcEEE
Q 024886 148 GAYQSILLLKDAGVKVAVVS-NFDTRLRKLLKDLNVIDLFDAVVISSEVG----C-EKPDPRIFKAALDQMSVEASRTVH 221 (261)
Q Consensus 148 g~~~~l~~L~~~g~~i~i~T-~~~~~~~~~l~~~gl~~~f~~i~~~~~~~----~-~Kp~~~~~~~~~~~l~~~~~~~l~ 221 (261)
..+++|+..+++||-+.-+- |+...++.+++...-.. -..|+...... . .+--..+...++++++++- +++
T Consensus 5 ~~~~ll~~Ake~~yAvpAfN~~nlE~~~AileaA~e~~-sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV--~lH 81 (286)
T COG0191 5 SMKELLDKAKENGYAVPAFNINNLETLQAILEAAEEEK-SPVIIQFSEGAAKYAGGADSLAHMVKALAEKYGVPV--ALH 81 (286)
T ss_pred cHHHHHHHHHHcCCceeeeeecCHHHHHHHHHHHHHhC-CCEEEEecccHHHHhchHHHHHHHHHHHHHHCCCCE--EEE
Confidence 34788999999998888774 33444677776553211 12333332211 1 1223346677888888652 344
Q ss_pred E--cCCchhhhHHHHhCCCeEEEECCCCCChHH
Q 024886 222 I--GDDEKADKQGANSLGIDCWLWGIDVKTFSD 252 (261)
Q Consensus 222 i--GD~~~~Di~~a~~~G~~~i~v~~~~~~~~e 252 (261)
- |++ ..++.-|.++|++++-++-....++|
T Consensus 82 lDHg~~-~~~~~~ai~~GFsSvMiDgS~~~~eE 113 (286)
T COG0191 82 LDHGAS-FEDCKQAIRAGFSSVMIDGSHLPFEE 113 (286)
T ss_pred CCCCCC-HHHHHHHHhcCCceEEecCCcCCHHH
Confidence 4 345 68899999999999888665444443
No 475
>PF03465 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination but this awaits experimental verification.; PDB: 3OBY_A 3E1Y_D 1DT9_A 2KTU_A 2KTV_A 3IR9_A 3E20_H 3OBW_A 3AGJ_F 3MCA_B ....
Probab=21.91 E-value=2.5e+02 Score=19.44 Aligned_cols=33 Identities=27% Similarity=0.344 Sum_probs=23.7
Q ss_pred HHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcC
Q 024886 149 AYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLN 181 (261)
Q Consensus 149 ~~~~l~~L~~~g~~i~i~T~~~~~~~~~l~~~g 181 (261)
+.++++...+.|.++.++|.....-..+++.+|
T Consensus 71 i~~l~~~a~~~g~~v~iis~~~e~G~~L~~~~g 103 (113)
T PF03465_consen 71 IEELIELAEQSGAKVEIISSEHEEGEQLLKGFG 103 (113)
T ss_dssp HHHHHHHHHHTTSEEEEE-TTSHHHHHHHHCTT
T ss_pred HHHHHHHHHHcCCEEEEEcCCCccHHHHHhcCC
Confidence 567788888899999999987665454546553
No 476
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=21.78 E-value=2.1e+02 Score=20.28 Aligned_cols=36 Identities=22% Similarity=0.195 Sum_probs=25.6
Q ss_pred ccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCc
Q 024886 147 HGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNV 182 (261)
Q Consensus 147 ~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl 182 (261)
|.+.++.+.+++.|+.++.++..+.. +..+.+..++
T Consensus 49 ~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~ 85 (149)
T cd03018 49 CALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGL 85 (149)
T ss_pred HHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCC
Confidence 44556667777778888888765554 6777887775
No 477
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=21.75 E-value=4.2e+02 Score=21.17 Aligned_cols=17 Identities=12% Similarity=-0.140 Sum_probs=8.0
Q ss_pred EEECCCCCChHHHHHhh
Q 024886 241 WLWGIDVKTFSDVQNRI 257 (261)
Q Consensus 241 i~v~~~~~~~~el~~~l 257 (261)
+++.++...-..|.+.|
T Consensus 133 vLi~rg~~~r~~L~~~L 149 (255)
T PRK05752 133 VLIMRGEGGRELLAERL 149 (255)
T ss_pred EEEEccCccHHHHHHHH
Confidence 44445544444454444
No 478
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=21.59 E-value=1.2e+02 Score=28.80 Aligned_cols=37 Identities=22% Similarity=0.238 Sum_probs=29.3
Q ss_pred eCccHHHHHHHHHH-CCCeEEEEeCCchH-HHHHHHhcC
Q 024886 145 LPHGAYQSILLLKD-AGVKVAVVSNFDTR-LRKLLKDLN 181 (261)
Q Consensus 145 ~~~g~~~~l~~L~~-~g~~i~i~T~~~~~-~~~~l~~~g 181 (261)
+.+.+.+.|+.|.+ .|..++|+|+.+.. ++.++...+
T Consensus 515 ~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l~~~~~~~~ 553 (726)
T PRK14501 515 PDKELRDLLRRLAADPNTDVAIISGRDRDTLERWFGDLP 553 (726)
T ss_pred CCHHHHHHHHHHHcCCCCeEEEEeCCCHHHHHHHhCCCC
Confidence 34678889999998 49999999998876 676666554
No 479
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=21.55 E-value=1.4e+02 Score=24.09 Aligned_cols=40 Identities=18% Similarity=0.244 Sum_probs=30.9
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcc
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVI 183 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~ 183 (261)
...||-...-+.|++.|++..|+|..+.. .+..++..|+.
T Consensus 70 ~~~PGP~~ARE~l~~~~iP~IvI~D~p~~k~kd~l~~~g~G 110 (276)
T PF01993_consen 70 AAAPGPTKAREMLSAKGIPCIVISDAPTKKAKDALEEEGFG 110 (276)
T ss_dssp TTSHHHHHHHHHHHHSSS-EEEEEEGGGGGGHHHHHHTT-E
T ss_pred CCCCCcHHHHHHHHhCCCCEEEEcCCCchhhHHHHHhcCCc
Confidence 34678888888899999999999998865 67788888763
No 480
>PLN02588 glycerol-3-phosphate acyltransferase
Probab=21.42 E-value=47 Score=29.84 Aligned_cols=20 Identities=15% Similarity=0.326 Sum_probs=16.1
Q ss_pred ccEEEEccCCccccccccHH
Q 024886 50 YDAVLLDAGGTLLQLAEPVE 69 (261)
Q Consensus 50 ~k~iifD~DGTL~d~~~~~~ 69 (261)
.+.+++|+||||+.+...++
T Consensus 50 ~~t~v~d~~g~Ll~s~s~Fp 69 (525)
T PLN02588 50 NHTLIFNVEGALLKSNSLFP 69 (525)
T ss_pred cceEEEecccceeccCCCCc
Confidence 45799999999998776544
No 481
>PRK05787 cobalt-precorrin-6Y C(5)-methyltransferase; Validated
Probab=21.38 E-value=3.8e+02 Score=20.53 Aligned_cols=92 Identities=16% Similarity=0.127 Sum_probs=54.7
Q ss_pred HCCCeEEEEeCCchHH---HHHHHhcCcccccceEEecCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEcCC-ch---hhh
Q 024886 158 DAGVKVAVVSNFDTRL---RKLLKDLNVIDLFDAVVISSEVGCEKPDPRIFKAALDQMSVEASRTVHIGDD-EK---ADK 230 (261)
Q Consensus 158 ~~g~~i~i~T~~~~~~---~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l~iGD~-~~---~Di 230 (261)
.+|.++++++.+++-+ ...+....... ++.. --|-...+..++.++|++..+..++.=+ .. .++
T Consensus 65 ~~g~~V~~l~~GDP~~~~~~~~~~~~~~~~-~~ve--------viPGiSs~~aaaa~~g~~l~~~~~is~~~~~~~~~~l 135 (210)
T PRK05787 65 AKGKNVVVLSTGDPLFSGLGKLLKVRRAVA-EDVE--------VIPGISSVQYAAARLGIDMNDVVFTTSHGRGPNFEEL 135 (210)
T ss_pred hCCCcEEEEecCCccccccHHHHHHHhccC-CCeE--------EEcCHHHHHHHHHHhCCCHHHcEEEeecCCCcchHHH
Confidence 4566788888777643 22222221111 2222 2366678999999999988887776322 11 234
Q ss_pred HHHHhCCCeEEEECCCCCChHHHHHhhh
Q 024886 231 QGANSLGIDCWLWGIDVKTFSDVQNRIL 258 (261)
Q Consensus 231 ~~a~~~G~~~i~v~~~~~~~~el~~~l~ 258 (261)
..+...+-..+.+..+.....++.+.|.
T Consensus 136 ~~~~~~~~~~v~l~~~~~~~~~i~~~L~ 163 (210)
T PRK05787 136 EDLLKNGRKVIMLPDPRFGPKEIAAELL 163 (210)
T ss_pred HHHHHcCCeEEEEcCCCCCHHHHHHHHH
Confidence 5555456666677666677888888774
No 482
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=21.31 E-value=2.7e+02 Score=23.02 Aligned_cols=38 Identities=18% Similarity=0.064 Sum_probs=26.6
Q ss_pred HHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCcccccceEEe
Q 024886 150 YQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVI 191 (261)
Q Consensus 150 ~~~l~~L~~~g~~i~i~T~~~~~~~~~l~~~gl~~~f~~i~~ 191 (261)
.++++.+++.|+++++.|=++......+..+|+ |.+++
T Consensus 251 ~~~v~~~~~~G~~v~vWTVNd~~~~~~l~~~GV----dgIiT 288 (300)
T cd08612 251 PSLFRHLQKRGIQVYGWVLNDEEEFERAFELGA----DGVMT 288 (300)
T ss_pred HHHHHHHHHCCCEEEEeecCCHHHHHHHHhcCC----CEEEe
Confidence 478889999999999999655553334444664 56664
No 483
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=21.30 E-value=1.2e+02 Score=22.66 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=22.2
Q ss_pred CccHHHHHHHHHHCCCeEEEEeCCch
Q 024886 146 PHGAYQSILLLKDAGVKVAVVSNFDT 171 (261)
Q Consensus 146 ~~g~~~~l~~L~~~g~~i~i~T~~~~ 171 (261)
.+.+.++++.++++|.+++.+|+...
T Consensus 114 t~~~i~~~~~ak~~Ga~vI~IT~~~~ 139 (177)
T cd05006 114 SPNVLKALEAAKERGMKTIALTGRDG 139 (177)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 46788999999999999999998654
No 484
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=21.17 E-value=3.6e+02 Score=20.09 Aligned_cols=89 Identities=11% Similarity=0.019 Sum_probs=51.0
Q ss_pred HHHHHHHHCCCeEEEEeCCchHHHHHHHhcCcccccceEEecCCC-CC------CCCCHHHHHHHHHHcCCCCCcEEEEc
Q 024886 151 QSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVISSEV-GC------EKPDPRIFKAALDQMSVEASRTVHIG 223 (261)
Q Consensus 151 ~~l~~L~~~g~~i~i~T~~~~~~~~~l~~~gl~~~f~~i~~~~~~-~~------~Kp~~~~~~~~~~~l~~~~~~~l~iG 223 (261)
..++.++..+..+++.+....++.... ..| .|.++.+... .. .....+.+..+.+..+ -.++..|
T Consensus 86 ~~~~~~~~~~~~~g~~~~t~~~~~~~~-~~g----~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~pv~a~G 157 (196)
T cd00564 86 AEARALLGPDLIIGVSTHSLEEALRAE-ELG----ADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVE---IPVVAIG 157 (196)
T ss_pred HHHHHHcCCCCEEEeeCCCHHHHHHHh-hcC----CCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCC---CCEEEEC
Confidence 344555556677777766444443332 234 3444433211 11 1122355666655533 3477777
Q ss_pred CCchhhhHHHHhCCCeEEEECCCC
Q 024886 224 DDEKADKQGANSLGIDCWLWGIDV 247 (261)
Q Consensus 224 D~~~~Di~~a~~~G~~~i~v~~~~ 247 (261)
--...++..+.++|...+.+++..
T Consensus 158 Gi~~~~i~~~~~~Ga~~i~~g~~i 181 (196)
T cd00564 158 GITPENAAEVLAAGADGVAVISAI 181 (196)
T ss_pred CCCHHHHHHHHHcCCCEEEEehHh
Confidence 655689999999999998887753
No 485
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=21.14 E-value=2.8e+02 Score=22.62 Aligned_cols=38 Identities=21% Similarity=0.215 Sum_probs=28.1
Q ss_pred HHHHHHHHHC-CCeEEEEeCCchHHHHHHHhcCcccccceEEe
Q 024886 150 YQSILLLKDA-GVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVI 191 (261)
Q Consensus 150 ~~~l~~L~~~-g~~i~i~T~~~~~~~~~l~~~gl~~~f~~i~~ 191 (261)
.++++.+++. |+++.+.|=++......+..+|+ |+|++
T Consensus 219 ~~~V~~~h~~~gl~V~~WTVN~~~~~~~l~~~GV----DgIiT 257 (263)
T cd08580 219 PAAVDCFRRNSKVKIVLFGINTADDYRLAKCLGA----DAVMV 257 (263)
T ss_pred HHHHHHHHhcCCcEEEEEEeCCHHHHHHHHHcCC----CEEEe
Confidence 5788899999 99999999656554445666674 67765
No 486
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=21.10 E-value=4.7e+02 Score=21.45 Aligned_cols=12 Identities=25% Similarity=0.282 Sum_probs=6.7
Q ss_pred HHHHHHHHhCCC
Q 024886 71 TYASIARKYGLN 82 (261)
Q Consensus 71 ~~~~~~~~~g~~ 82 (261)
.+.+.+++.|..
T Consensus 82 gi~~~~~~~g~~ 93 (328)
T PRK11303 82 YLERQARQRGYQ 93 (328)
T ss_pred HHHHHHHHcCCE
Confidence 445556666654
No 487
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=20.94 E-value=3.1e+02 Score=21.92 Aligned_cols=38 Identities=24% Similarity=0.283 Sum_probs=25.3
Q ss_pred HHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCcccccceEEe
Q 024886 150 YQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVI 191 (261)
Q Consensus 150 ~~~l~~L~~~g~~i~i~T~~~~~~~~~l~~~gl~~~f~~i~~ 191 (261)
.++++.+++.|+++++.|=++......+..+|+ |.|++
T Consensus 199 ~~~v~~~~~~g~~v~~WTvn~~~~~~~l~~~GV----dgIiT 236 (249)
T PRK09454 199 EARVAALKAAGLRILVYTVNDPARARELLRWGV----DCICT 236 (249)
T ss_pred HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCC----CEEEe
Confidence 467888888888888888555553344555564 55554
No 488
>TIGR00664 DNA_III_psi DNA polymerase III, psi subunit. This small subunit of the DNA polymerase III holoenzyme in E. coli and related species appearsto have a narrow taxonomic distribution. It is not found so far outside the gamma subdivision proteobacteria.
Probab=20.89 E-value=1.9e+02 Score=20.85 Aligned_cols=19 Identities=5% Similarity=0.246 Sum_probs=10.3
Q ss_pred HHHHHHHHcCCCCCcEEEE
Q 024886 204 IFKAALDQMSVEASRTVHI 222 (261)
Q Consensus 204 ~~~~~~~~l~~~~~~~l~i 222 (261)
.|.-+++.+++++++++++
T Consensus 53 L~~dILrsl~L~~~q~~~l 71 (133)
T TIGR00664 53 LLADVLLALNLKKDNCLCL 71 (133)
T ss_pred HHHHHHHHcCCCHHHeeee
Confidence 3555555555555555555
No 489
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=20.83 E-value=1.9e+02 Score=22.66 Aligned_cols=27 Identities=11% Similarity=0.000 Sum_probs=21.6
Q ss_pred eeCcc-HHHHHHHHHHCCCeEEEEeCCc
Q 024886 144 HLPHG-AYQSILLLKDAGVKVAVVSNFD 170 (261)
Q Consensus 144 ~~~~g-~~~~l~~L~~~g~~i~i~T~~~ 170 (261)
.+.++ +.++++.+++.|.++.+.||+.
T Consensus 77 ll~~~~~~~li~~~~~~g~~~~i~TNG~ 104 (235)
T TIGR02493 77 LLQPEFLSELFKACKELGIHTCLDTSGF 104 (235)
T ss_pred ccCHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 44566 4588999999999999999983
No 490
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=20.78 E-value=1.7e+02 Score=19.84 Aligned_cols=37 Identities=24% Similarity=0.482 Sum_probs=27.3
Q ss_pred HHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCccccc
Q 024886 149 AYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLF 186 (261)
Q Consensus 149 ~~~~l~~L~~~g~~i~i~T~~~~~~~~~l~~~gl~~~f 186 (261)
+.++.+.++..|.+++++ +....+...++..|+...+
T Consensus 69 L~~~~~~~~~~g~~~~l~-~~~~~v~~~l~~~~~~~~~ 105 (117)
T PF01740_consen 69 LVDIIKELRRRGVQLVLV-GLNPDVRRILERSGLIDFI 105 (117)
T ss_dssp HHHHHHHHHHTTCEEEEE-SHHHHHHHHHHHTTGHHHS
T ss_pred HHHHHHHHHHCCCEEEEE-ECCHHHHHHHHHcCCChhc
Confidence 346667788888888776 4455677789999987666
No 491
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=20.62 E-value=1.3e+02 Score=24.42 Aligned_cols=27 Identities=22% Similarity=0.043 Sum_probs=23.7
Q ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCc
Q 024886 144 HLPHGAYQSILLLKDAGVKVAVVSNFD 170 (261)
Q Consensus 144 ~~~~g~~~~l~~L~~~g~~i~i~T~~~ 170 (261)
.-+|+..++++.|++.|+++.+..+..
T Consensus 63 ~~Fpdp~~~i~~l~~~g~~~~~~~~P~ 89 (265)
T cd06589 63 GKFPNPKSMIDELHDNGVKLVLWIDPY 89 (265)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEEeChh
Confidence 458999999999999999999988754
No 492
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=20.35 E-value=4.6e+02 Score=21.05 Aligned_cols=57 Identities=18% Similarity=0.128 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHcCCCCCcEEEEcC--CchhhhHHHHhCC-CeEEEECCC----CCChHHHHHhhh
Q 024886 198 EKPDPRIFKAALDQMSVEASRTVHIGD--DEKADKQGANSLG-IDCWLWGID----VKTFSDVQNRIL 258 (261)
Q Consensus 198 ~Kp~~~~~~~~~~~l~~~~~~~l~iGD--~~~~Di~~a~~~G-~~~i~v~~~----~~~~~el~~~l~ 258 (261)
..++.+.+..+.+..++ .+++.|+ + ..|+..+...| +..+.++.. .-++.++.+.+.
T Consensus 184 ~g~~~~~~~~i~~~~~i---pvia~GGi~s-~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~~ 247 (254)
T TIGR00735 184 SGYDLELTKAVSEAVKI---PVIASGGAGK-PEHFYEAFTKGKADAALAASVFHYREITIGEVKEYLA 247 (254)
T ss_pred CCCCHHHHHHHHHhCCC---CEEEeCCCCC-HHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHHH
Confidence 44666778888887654 3788884 4 57888888877 887766443 456777766654
No 493
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=20.33 E-value=1.3e+02 Score=22.55 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=22.4
Q ss_pred CccHHHHHHHHHHCCCeEEEEeCCchH
Q 024886 146 PHGAYQSILLLKDAGVKVAVVSNFDTR 172 (261)
Q Consensus 146 ~~g~~~~l~~L~~~g~~i~i~T~~~~~ 172 (261)
.+.+.++++.+++.|.++..+|+....
T Consensus 88 t~~~i~~~~~ak~~g~~iI~IT~~~~s 114 (179)
T cd05005 88 TSSVVNAAEKAKKAGAKVVLITSNPDS 114 (179)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 356788899999999999999986644
No 494
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=20.31 E-value=2e+02 Score=19.13 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=25.8
Q ss_pred HHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCcc
Q 024886 150 YQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNVI 183 (261)
Q Consensus 150 ~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl~ 183 (261)
..+.+.|.+.|++++.-+....+ ..+.++.+|..
T Consensus 42 ~~~~~~L~~~g~P~Y~hv~~~N~~~~r~~~~lg~~ 76 (89)
T PF08444_consen 42 YHLAQYLHKLGFPFYGHVDEDNEASQRLSKSLGFI 76 (89)
T ss_pred HHHHHHHHHCCCCeEeehHhccHHHHHHHHHCCCe
Confidence 35678889999999998875544 67788888753
No 495
>PRK09482 flap endonuclease-like protein; Provisional
Probab=20.11 E-value=1.2e+02 Score=24.76 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=23.7
Q ss_pred HHHHHHcCCCCCcEE----EEcCCchhhhHHHHhCCCeE
Q 024886 206 KAALDQMSVEASRTV----HIGDDEKADKQGANSLGIDC 240 (261)
Q Consensus 206 ~~~~~~l~~~~~~~l----~iGD~~~~Di~~a~~~G~~~ 240 (261)
+.+.+++|+.|++++ .+||+ ..+|.+....|-++
T Consensus 157 ~~v~~~~Gv~P~q~~D~~aL~GD~-sDnIpGVpGIG~Kt 194 (256)
T PRK09482 157 PFIEQEFGVEPQQLPDYWGLAGIS-SSKIPGVAGIGPKS 194 (256)
T ss_pred HHHHHHhCCCHHHHHHHHHHhCCC-ccCCCCCCCcChHH
Confidence 456678898876654 78998 67787666655443
No 496
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=20.08 E-value=2.3e+02 Score=22.92 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=24.5
Q ss_pred HHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCc
Q 024886 150 YQSILLLKDAGVKVAVVSNFDTR-LRKLLKDLNV 182 (261)
Q Consensus 150 ~~~l~~L~~~g~~i~i~T~~~~~-~~~~l~~~gl 182 (261)
.++++.+++.|+++++.|=.+.. +...++.+|+
T Consensus 218 ~~~v~~~~~~G~~v~vWTVn~~~~~~~l~~~~GV 251 (258)
T cd08573 218 SAYVRYWRARGIRVIAWTVNTPTEKQYFAKTLNV 251 (258)
T ss_pred HHHHHHHHHCCCEEEEEecCCHHHHHHHHHHhCC
Confidence 47889999999999999965655 4444433776
No 497
>smart00497 IENR1 Intron encoded nuclease repeat motif. Repeat of unknown function, but possibly DNA-binding via helix-turn-helix motif (Ponting, unpublished).
Probab=20.03 E-value=1.5e+02 Score=16.76 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=19.8
Q ss_pred cEEEEccCCccccccccHHHHHHHHHHHhCCC
Q 024886 51 DAVLLDAGGTLLQLAEPVEETYASIARKYGLN 82 (261)
Q Consensus 51 k~iifD~DGTL~d~~~~~~~~~~~~~~~~g~~ 82 (261)
.+.++|.+|+++..- ....++++.+|+.
T Consensus 3 ~V~~~d~~~~~i~~f----~S~~eAa~~lg~~ 30 (53)
T smart00497 3 PVYVYDLDGNLIGEF----SSIREAAKYLGIS 30 (53)
T ss_pred cEEEEeCCCCEEEEe----cCHHHHHHHhCCC
Confidence 578899999998532 3466677777764
No 498
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=20.02 E-value=3.1e+02 Score=21.49 Aligned_cols=39 Identities=33% Similarity=0.340 Sum_probs=26.5
Q ss_pred HHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCcccccceEEe
Q 024886 149 AYQSILLLKDAGVKVAVVSNFDTRLRKLLKDLNVIDLFDAVVI 191 (261)
Q Consensus 149 ~~~~l~~L~~~g~~i~i~T~~~~~~~~~l~~~gl~~~f~~i~~ 191 (261)
-.++++.+++.|.++++.|-.+......+..+|+ |.+++
T Consensus 190 ~~~~v~~~~~~G~~v~~wTvn~~~~~~~l~~~GV----dgi~T 228 (233)
T cd08582 190 NPAFIKALRDAGLKLNVWTVDDAEDAKRLIELGV----DSITT 228 (233)
T ss_pred CHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHCCC----CEEEc
Confidence 3478888999999999999666553333444564 55554
Done!