BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024887
(261 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=4 SV=1
Length = 271
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/278 (31%), Positives = 113/278 (40%), Gaps = 93/278 (33%)
Query: 44 SNLCKNCKRPGHFARECPNV--------AICHNCGLPGHIASECTTKA--------LCWN 87
S C+NC + GH+ARECP C CG GH++ EC +A C+
Sbjct: 15 STSCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAGAMTCFR 74
Query: 88 CREPGHMAGNCPNEGI--------CHTCGKAGHRARDCT------------------APP 121
C E GHM+ +CPN C+ CG+ GH +RDC A
Sbjct: 75 CGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQG 134
Query: 122 LPPGDLRLCNNCYKQGHFAADCTN---------DKACNNCRKTGHLARDCPN-------- 164
GD R C C GH + DC N D+ C C GH++RDCPN
Sbjct: 135 GYSGD-RTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDCPNGQGGYSGA 193
Query: 165 -DPICNLCNVSGHVARHCPKSGGLGDRYSGGSGARGSGGSGARGGGYRDIVCRNCQQLGH 223
D C C SGH++R CP +G S GSG D C C + GH
Sbjct: 194 GDRKCYKCGESGHMSRECPSAG------STGSG---------------DRACYKCGKPGH 232
Query: 224 MSRDCMGPLM-----------VCHNCGGRGHLAYECPS 250
+SR+C C+ CG GH++ +CPS
Sbjct: 233 ISRECPEAGGSYGGSRGGGDRTCYKCGEAGHISRDCPS 270
Score = 78.2 bits (191), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 84/175 (48%), Gaps = 31/175 (17%)
Query: 104 CHTCGKAGHRARDCTAPPLPPGDLR--LCNNCYKQGHFAADCTNDK--------ACNNCR 153
C CGK GH AR+C GD R C C ++GH + +C N+ C C
Sbjct: 18 CRNCGKEGHYARECPEADSK-GDERSTTCFRCGEEGHMSRECPNEARSGAAGAMTCFRCG 76
Query: 154 KTGHLARDCPNDPI--------CNLCNVSGHVARHCPKSGGLGDRYSGGSGARGSGGSGA 205
+ GH++RDCPN C C GH++R CP S G G R GG G + G SGA
Sbjct: 77 EAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQG-GSR--GGYGQK-RGRSGA 132
Query: 206 RGGGYRDIVCRNCQQLGHMSRDCMGPL--------MVCHNCGGRGHLAYECPSGR 252
+GG D C C GH+SRDC C+ CG GH++ +CP+G+
Sbjct: 133 QGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDCPNGQ 187
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 89/211 (42%), Gaps = 64/211 (30%)
Query: 37 SRRGYSQSNLCKNCKRPGHFARECPNVAI--------CHNCGLPGHIASECTTKA----- 83
+R G + + C C GH +R+CPN A C+ CG GH++ +C +
Sbjct: 62 ARSGAAGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRG 121
Query: 84 -------------------LCWNCREPGHMAGNCPN---------EGICHTCGKAGHRAR 115
C+ C + GH++ +CPN + C+ CG AGH +R
Sbjct: 122 GYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHISR 181
Query: 116 DC---TAPPLPPGDLRLCNNCYKQGHFAADC-------TNDKACNNCRKTGHLARDCPN- 164
DC GD R C C + GH + +C + D+AC C K GH++R+CP
Sbjct: 182 DCPNGQGGYSGAGD-RKCYKCGESGHMSRECPSAGSTGSGDRACYKCGKPGHISRECPEA 240
Query: 165 -----------DPICNLCNVSGHVARHCPKS 184
D C C +GH++R CP S
Sbjct: 241 GGSYGGSRGGGDRTCYKCGEAGHISRDCPSS 271
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 72/161 (44%), Gaps = 31/161 (19%)
Query: 25 RFSYRDAPYRRGSRRGYSQSNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKAL 84
R Y R G++ GYS C C GH +R+CPN G G+ +
Sbjct: 120 RGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPN-------GQGGYSGA---GDRT 169
Query: 85 CWNCREPGHMAGNCPN---------EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYK 135
C+ C + GH++ +CPN + C+ CG++GH +R+C + R C C K
Sbjct: 170 CYKCGDAGHISRDCPNGQGGYSGAGDRKCYKCGESGHMSRECPSAGSTGSGDRACYKCGK 229
Query: 136 QGHFAADCTN------------DKACNNCRKTGHLARDCPN 164
GH + +C D+ C C + GH++RDCP+
Sbjct: 230 PGHISRECPEAGGSYGGSRGGGDRTCYKCGEAGHISRDCPS 270
>sp|P53849|GIS2_YEAST Zinc finger protein GIS2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=GIS2 PE=1 SV=1
Length = 153
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 80/151 (52%), Gaps = 16/151 (10%)
Query: 47 CKNCKRPGHFARECPNVAICHNCGLPGHIASECTTK-----ALCWNCREPGHMAGNCPNE 101
C C + GH A +C + +C+NC PGH+ ++CT C+NC E GH+ C +
Sbjct: 6 CYVCGKIGHLAEDCDSERLCYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSECTVQ 65
Query: 102 GICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQG---HFAADCTNDKA-----CNNCR 153
C C + GH +R+C P ++ +CYK G H A DC + C C
Sbjct: 66 R-CFNCNQTGHISRECPEPKKTSRFSKV--SCYKCGGPNHMAKDCMKEDGISGLKCYTCG 122
Query: 154 KTGHLARDCPNDPICNLCNVSGHVARHCPKS 184
+ GH++RDC ND +C CN +GH+++ CPK+
Sbjct: 123 QAGHMSRDCQNDRLCYNCNETGHISKDCPKA 153
Score = 87.4 bits (215), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 70/131 (53%), Gaps = 16/131 (12%)
Query: 46 LCKNCKRPGHFARECP-----NVAICHNCGLPGHIASECTTKALCWNCREPGHMAGNCP- 99
LC NC +PGH +C C+NCG GH+ SECT + C+NC + GH++ CP
Sbjct: 24 LCYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSECTVQR-CFNCNQTGHISRECPE 82
Query: 100 -------NEGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADCTNDKACNNC 152
++ C+ CG H A+DC G C C + GH + DC ND+ C NC
Sbjct: 83 PKKTSRFSKVSCYKCGGPNHMAKDCMKEDGISG--LKCYTCGQAGHMSRDCQNDRLCYNC 140
Query: 153 RKTGHLARDCP 163
+TGH+++DCP
Sbjct: 141 NETGHISKDCP 151
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 87/179 (48%), Gaps = 35/179 (19%)
Query: 81 TKALCWNCREPGHMAGNCPNEGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFA 140
++ C+ C + GH+A +C +E +C+ C K GH DCT P + + C NC + GH
Sbjct: 2 SQKACYVCGKIGHLAEDCDSERLCYNCNKPGHVQTDCTMPRTV--EFKQCYNCGETGHVR 59
Query: 141 ADCTNDKACNNCRKTGHLARDCP--------NDPICNLCNVSGHVARHCPKSGGLGDRYS 192
++CT + C NC +TGH++R+CP + C C H+A+ C K G+
Sbjct: 60 SECTVQR-CFNCNQTGHISRECPEPKKTSRFSKVSCYKCGGPNHMAKDCMKEDGI----- 113
Query: 193 GGSGARGSGGSGARGGGYRDIVCRNCQQLGHMSRDCMGPLMVCHNCGGRGHLAYECPSG 251
SG + C C Q GHMSRDC + C+NC GH++ +CP
Sbjct: 114 ----------SGLK--------CYTCGQAGHMSRDCQNDRL-CYNCNETGHISKDCPKA 153
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 25/115 (21%)
Query: 145 NDKACNNCRKTGHLARDCPNDPICNLCNVSGHVARHCPKSGGLGDRYSGGSGARGSGGSG 204
+ KAC C K GHLA DC ++ +C CN GHV C +
Sbjct: 2 SQKACYVCGKIGHLAEDCDSERLCYNCNKPGHVQTDC---------------------TM 40
Query: 205 ARGGGYRDIVCRNCQQLGHMSRDCMGPLMVCHNCGGRGHLAYECPSGRFLDRYSR 259
R ++ C NC + GH+ +C + C NC GH++ ECP + R+S+
Sbjct: 41 PRTVEFKQ--CYNCGETGHVRSECT--VQRCFNCNQTGHISRECPEPKKTSRFSK 91
>sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 OS=Caenorhabditis elegans GN=glh-4
PE=2 SV=2
Length = 1156
Score = 89.4 bits (220), Expect = 2e-17, Method: Composition-based stats.
Identities = 46/116 (39%), Positives = 57/116 (49%), Gaps = 18/116 (15%)
Query: 66 CHNCGLPGHIASECTTKAL----CWNCREPGHMAGNCPN----EGICHTCGKAGHRARDC 117
CHNCG GHI+ EC + C NC + GH A +C G C CG GH A DC
Sbjct: 572 CHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDC 631
Query: 118 TAPPLPPGDLRLCNNCYKQGHFAADCTNDKA-------CNNCRKTGHLARDCPNDP 166
P +P G C NC ++GHFA DC N++ C C + GH +CP P
Sbjct: 632 DQPKVPRGP---CRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYECPTRP 684
Score = 75.5 bits (184), Expect = 3e-13, Method: Composition-based stats.
Identities = 51/170 (30%), Positives = 64/170 (37%), Gaps = 62/170 (36%)
Query: 104 CHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADCTNDKA----CNNCRKTGHLA 159
CH CG+ GH +++C P +P C NC + GHFA+DC + C NC GH A
Sbjct: 572 CHNCGEEGHISKECDKPKVPRFP---CRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFA 628
Query: 160 RDCPNDPICNLCNVSGHVARHCPKSGGLGDRYSGGSGARGSGGSGARGGGYRDIVCRNCQ 219
DC + RG CRNC
Sbjct: 629 VDCDQPKV-----------------------------PRGP--------------CRNCG 645
Query: 220 QLGHMSRDC------MGPLMVCHNCGGRGHLAYECPS------GRFLDRY 257
Q GH ++DC M P C C GH YECP+ G FL+ Y
Sbjct: 646 QEGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYECPTRPKDLQGNFLESY 695
Score = 63.2 bits (152), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 18/97 (18%)
Query: 47 CKNCKRPGHFARECPNVAI----CHNCGLPGHIASEC----TTKALCWNCREPGHMAGNC 98
C+NC++ GHFA +C + C NCG+ GH A +C + C NC + GH A +C
Sbjct: 595 CRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDCDQPKVPRGPCRNCGQEGHFAKDC 654
Query: 99 PNEGI-------CHTCGKAGHRARDCTAPPLPPGDLR 128
NE + C C + GH +C P P DL+
Sbjct: 655 QNERVRMEPTEPCRRCAEEGHWGYEC---PTRPKDLQ 688
Score = 44.7 bits (104), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 11/69 (15%)
Query: 191 YSGGSGARGSGGSGARGGGYRD--------IVCRNCQQLGHMSRDCMGPLM---VCHNCG 239
+ GG RG G G ++ CRNC+QLGH + DC P + C NCG
Sbjct: 563 WDGGERPRGCHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQPRVPRGPCRNCG 622
Query: 240 GRGHLAYEC 248
GH A +C
Sbjct: 623 IEGHFAVDC 631
Score = 39.7 bits (91), Expect = 0.023, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 38/97 (39%), Gaps = 26/97 (26%)
Query: 182 PKSGGLGDRYSGGS------GARGSGGSGARG-----------------GGYRDIVCRNC 218
P GLG +GG GA G G S G GG R C NC
Sbjct: 516 PSKSGLGSFNTGGGAVKSAFGAAGFGSSSNFGNGNTFGEPSDNQRGNWDGGERPRGCHNC 575
Query: 219 QQLGHMSRDCMGPLM---VCHNCGGRGHLAYECPSGR 252
+ GH+S++C P + C NC GH A +C R
Sbjct: 576 GEEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQPR 612
>sp|Q3T0Q6|CNBP_BOVIN Cellular nucleic acid-binding protein OS=Bos taurus GN=CNBP PE=2
SV=1
Length = 170
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 80/169 (47%), Gaps = 36/169 (21%)
Query: 44 SNLCKNCKRPGHFARECPNVA----------------------ICHNCGLPGHIASECTT 81
SN C C R GH+ARECP IC+ CG GH+A +C
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDL 62
Query: 82 KA-LCWNCREPGHMAGNCPN-----EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYK 135
+ C+NC GH+A +C E C+ CGK GH ARDC D + C +C +
Sbjct: 63 QEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC-----DHADEQKCYSCGE 117
Query: 136 QGHFAADCTNDKACNNCRKTGHLARDC--PNDPICNLCNVSGHVARHCP 182
GH DCT K C C +TGH+A +C ++ C C SGH+AR C
Sbjct: 118 FGHIQKDCTKVK-CYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 165
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 18/136 (13%)
Query: 42 SQSNLCKNCKRPGHFARECP-NVAICHNCGLPGHIASECTT-----KALCWNCREPGHMA 95
S ++C C GH A++C C+NCG GHIA +C + C+NC +PGH+A
Sbjct: 42 SLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLA 101
Query: 96 GNC--PNEGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADC--TNDKACNN 151
+C +E C++CG+ GH +DCT C C + GH A +C T++ C
Sbjct: 102 RDCDHADEQKCYSCGEFGHIQKDCTKVK--------CYRCGETGHVAINCSKTSEVNCYR 153
Query: 152 CRKTGHLARDCPNDPI 167
C ++GHLAR+C +
Sbjct: 154 CGESGHLARECTIEAT 169
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 41 YSQSNLCKNCKRPGHFARECPNVAICHNCGLPGHIASEC--TTKALCWNCREPGHMAGNC 98
++ C +C GH ++C V C+ CG GH+A C T++ C+ C E GH+A C
Sbjct: 106 HADEQKCYSCGEFGHIQKDCTKVK-CYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 164
Query: 99 PNEGI 103
E
Sbjct: 165 TIEAT 169
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 168 CNLCNVSGHVARHCPKSGGLGDRYSGGSGARGSGGSGARGGGYRDIVCRNCQQLGHMSRD 227
C C SGH AR CP GG G S +C C + GH+++D
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPD------ICYRCGESGHLAKD 59
Query: 228 CMGPLMVCHNCGGRGHLAYECPS 250
C C+NCG GH+A +C
Sbjct: 60 CDLQEDACYNCGRGGHIAKDCKE 82
>sp|O65639|CSP1_ARATH Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=2 SV=1
Length = 299
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 89/220 (40%), Gaps = 64/220 (29%)
Query: 47 CKNCKRPGHFARECPNVAI-------------CHNCGLPGHIASECTTKALCWNCREPGH 93
C NC GH +++C C+NCG GH A +CT+ N + G
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAG---NGDQRGA 158
Query: 94 MAGNCPNEGICHTCGKAGHRARDCTAPPLPPGDLR--------LCNNCYKQGHFAADCTN 145
G N+G C+TCG GH ARDCT + GD R C C GHFA DCT
Sbjct: 159 TKGG--NDG-CYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQ 215
Query: 146 DKACNNCRK-------------TGHLARDCPNDPI----CNLCNVSGHVARHCPKSGGLG 188
A N R GH+ARDC C C SGH+AR C +
Sbjct: 216 KVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDCDQ----- 270
Query: 189 DRYSGGSGARGSGGSGARGGGYRDIVCRNCQQLGHMSRDC 228
RGSGG G D C C + GH +R+C
Sbjct: 271 ---------RGSGGGG------NDNACYKCGKEGHFAREC 295
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 79/196 (40%), Gaps = 59/196 (30%)
Query: 85 CWNCREPGHMAGNCPNEGI-------------CHTCGKAGHRARDCTAPPLPPGDLRLCN 131
C+NC E GH++ +C G C+ CG GH ARDCT+ GD R
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAG--NGDQR--- 156
Query: 132 NCYKQGHFAADCTNDKACNNCRKTGHLARDCPNDPI---------------CNLCNVSGH 176
A + C C GH+ARDC + C C GH
Sbjct: 157 --------GATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGH 208
Query: 177 VARHCPKSGGLGDRYSGGSGARGSGGSGARGGGYRDIVCRNCQQLGHMSRDCMG---PLM 233
AR C + G+ SGG GGSG C +C +GH++RDC P
Sbjct: 209 FARDCTQKVAAGNVRSGG------GGSG---------TCYSCGGVGHIARDCATKRQPSR 253
Query: 234 VCHNCGGRGHLAYECP 249
C+ CGG GHLA +C
Sbjct: 254 GCYQCGGSGHLARDCD 269
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 62/164 (37%), Gaps = 65/164 (39%)
Query: 47 CKNCKRPGHFARECPNVAI-------------CHNCGLPGHIASECTTKAL--------- 84
C NC GHFAR+C + C+ CG GH+A +CT K++
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAV 193
Query: 85 ------CWNCREPGHMAGNCPNE-------------GICHTCGKAGHRARDCTAPPLPP- 124
C+ C + GH A +C + G C++CG GH ARDC P
Sbjct: 194 KGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSR 253
Query: 125 -----------------------GDLRLCNNCYKQGHFAADCTN 145
G+ C C K+GHFA +C++
Sbjct: 254 GCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFARECSS 297
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 27/113 (23%)
Query: 34 RRGSRRGYSQSNLCKNCKRPGHFARECP------NV-------AICHNCGLPGHIASECT 80
+RG+ +G ++ C C GHFAR+C NV C++CG GHIA +C
Sbjct: 189 QRGAVKG--GNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCA 246
Query: 81 TKAL----CWNCREPGHMAGNCP--------NEGICHTCGKAGHRARDCTAPP 121
TK C+ C GH+A +C N+ C+ CGK GH AR+C++
Sbjct: 247 TKRQPSRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFARECSSVA 299
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 73/168 (43%), Gaps = 39/168 (23%)
Query: 104 CHTCGKAGHRARDCTAPPLPPGDLRL------CNNCYKQGHFAADCTNDKACNNCRKTGH 157
C+ CG+ GH ++DC G R C NC GHFA DCT + N + G
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCT---SAGNGDQRG- 157
Query: 158 LARDCPNDPICNLCNVSGHVARHCP-KSGGLGDRYSGGSGARGSGGSGARGGGYRDIVCR 216
A ND C C GHVAR C KS G GD+ RG+ G G C
Sbjct: 158 -ATKGGNDG-CYTCGDVGHVARDCTQKSVGNGDQ-------RGAVKGGNDG-------CY 201
Query: 217 NCQQLGHMSRDCM------------GPLMVCHNCGGRGHLAYECPSGR 252
C +GH +RDC G C++CGG GH+A +C + R
Sbjct: 202 TCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKR 249
Score = 31.6 bits (70), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 14/63 (22%)
Query: 29 RDAPYRRGSRRGYSQSNLCKNCKRPGHFARECP--------NVAICHNCGLPGHIASECT 80
RD +R RG C C GH AR+C N C+ CG GH A EC+
Sbjct: 243 RDCATKRQPSRG------CYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFARECS 296
Query: 81 TKA 83
+ A
Sbjct: 297 SVA 299
>sp|O42395|CNBP_CHICK Cellular nucleic acid-binding protein OS=Gallus gallus GN=CNBP PE=2
SV=1
Length = 172
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 80/171 (46%), Gaps = 38/171 (22%)
Query: 44 SNLCKNCKRPGHFARECPNVA-----------------------ICHNCGLPGHIASECT 80
SN C C R GH+ARECP IC+ CG GH+A +C
Sbjct: 3 SNECFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDCD 62
Query: 81 TKA--LCWNCREPGHMAGNCPN-----EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNC 133
+ C+NC GH+A +C E C+ CGK GH ARDC D + C +C
Sbjct: 63 LQEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC-----DHADEQKCYSC 117
Query: 134 YKQGHFAADCTNDKACNNCRKTGHLARDC--PNDPICNLCNVSGHVARHCP 182
+ GH DCT K C C +TGH+A +C ++ C C SGH+AR C
Sbjct: 118 GEFGHIQKDCTKVK-CYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 167
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 72/137 (52%), Gaps = 19/137 (13%)
Query: 42 SQSNLCKNCKRPGHFAREC--PNVAICHNCGLPGHIASECTT-----KALCWNCREPGHM 94
S ++C C GH A++C C+NCG GHIA +C + C+NC +PGH+
Sbjct: 43 SLPDICYRCGESGHLAKDCDLQEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHL 102
Query: 95 AGNC--PNEGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADC--TNDKACN 150
A +C +E C++CG+ GH +DCT C C + GH A +C T++ C
Sbjct: 103 ARDCDHADEQKCYSCGEFGHIQKDCTKVK--------CYRCGETGHVAINCSKTSEVNCY 154
Query: 151 NCRKTGHLARDCPNDPI 167
C ++GHLAR+C +
Sbjct: 155 RCGESGHLARECTIEAT 171
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 41 YSQSNLCKNCKRPGHFARECPNVAICHNCGLPGHIASEC--TTKALCWNCREPGHMAGNC 98
++ C +C GH ++C V C+ CG GH+A C T++ C+ C E GH+A C
Sbjct: 108 HADEQKCYSCGEFGHIQKDCTKVK-CYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 166
Query: 99 PNEGI 103
E
Sbjct: 167 TIEAT 171
>sp|P36627|BYR3_SCHPO Cellular nucleic acid-binding protein homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=byr3 PE=4 SV=1
Length = 179
Score = 80.9 bits (198), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 75/154 (48%), Gaps = 19/154 (12%)
Query: 47 CKNCKRPGHFARECPNVAICHNCGLPGHIASECT---TKALCWNCREPGHMAGNCPNE-- 101
C NC GH AREC +IC+NC GH ASECT + C+ C GH+ +CP+
Sbjct: 19 CYNCGENGHQARECTKGSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPN 78
Query: 102 ----GICHTCGKAGHRARDCTAPPLPPGDL----RLCNNCY---KQGHFAADCTNDKACN 150
C+ CG+ GH ARDC G R NCY GH A DCT C
Sbjct: 79 PRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVKCY 138
Query: 151 NCRKTGHLARDC---PNDPICNLCNVSGHVARHC 181
+C K GH + +C + +C CN GH+A +C
Sbjct: 139 SCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNC 172
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 79/156 (50%), Gaps = 35/156 (22%)
Query: 104 CHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADCT---NDKACNNCRKTGHLAR 160
C+ CG+ GH+AR+CT +C NC + GH A++CT +K C C GHL R
Sbjct: 19 CYNCGENGHQARECT-------KGSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVR 71
Query: 161 DCPNDP------ICNLCNVSGHVARHCPKSGGLGDRYSGGSGARGSGGSGARGGGYR-DI 213
DCP+ P C C GH+AR C +G SG R GG+R ++
Sbjct: 72 DCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQ---------------SGGRFGGHRSNM 116
Query: 214 VCRNCQQLGHMSRDC-MGPLMVCHNCGGRGHLAYEC 248
C C GH +RDC MG + C++CG GH ++EC
Sbjct: 117 NCYACGSYGHQARDCTMG--VKCYSCGKIGHRSFEC 150
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 78/185 (42%), Gaps = 43/185 (23%)
Query: 66 CHNCGLPGHIASECTTKALCWNCREPGHMAGNCP---NEGICHTCGKAGHRARDCTAPPL 122
C+NCG GH A ECT ++C+NC + GH A C E C+ CG AGH RDC + P
Sbjct: 19 CYNCGENGHQARECTKGSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPN 78
Query: 123 PPGDLRLCNNCYKQGHFAADC-TNDKA-------------CNNCRKTGHLARDCPNDPIC 168
P C C + GH A DC TN + C C GH ARDC C
Sbjct: 79 PRQGAE-CYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVKC 137
Query: 169 NLCNVSGHVARHCPKSGGLGDRYSGGSGARGSGGSGARGGGYRDIVCRNCQQLGHMSRDC 228
C GH + C ++ S G +C C Q GH++ +C
Sbjct: 138 YSCGKIGHRSFECQQA-------SDGQ------------------LCYKCNQPGHIAVNC 172
Query: 229 MGPLM 233
P++
Sbjct: 173 TSPVI 177
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 69/152 (45%), Gaps = 33/152 (21%)
Query: 42 SQSNLCKNCKRPGHFARECP---NVAICHNCGLPGHIASECTTK------ALCWNCREPG 92
++ ++C NC + GH A EC C+ CG GH+ +C + A C+ C G
Sbjct: 33 TKGSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVG 92
Query: 93 HMAGNCPNEGI--------------CHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGH 138
H+A +C G C+ CG GH+ARDCT C +C K GH
Sbjct: 93 HIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMG-------VKCYSCGKIGH 145
Query: 139 FAADC---TNDKACNNCRKTGHLARDCPNDPI 167
+ +C ++ + C C + GH+A +C + I
Sbjct: 146 RSFECQQASDGQLCYKCNQPGHIAVNCTSPVI 177
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 34 RRGSRRGYSQSNL-CKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKA---LCWNCR 89
+ G R G +SN+ C C GH AR+C C++CG GH + EC + LC+ C
Sbjct: 104 QSGGRFGGHRSNMNCYACGSYGHQARDCTMGVKCYSCGKIGHRSFECQQASDGQLCYKCN 163
Query: 90 EPGHMAGNCPNEGI 103
+PGH+A NC + I
Sbjct: 164 QPGHIAVNCTSPVI 177
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 214 VCRNCQQLGHMSRDCMGPLM--VCHNCGGRGHLAYECPS 250
+C NC Q GH + +C P C+ CG GHL +CPS
Sbjct: 37 ICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPS 75
>sp|P62634|CNBP_RAT Cellular nucleic acid-binding protein OS=Rattus norvegicus GN=Cnbp
PE=2 SV=1
Length = 177
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 80/176 (45%), Gaps = 43/176 (24%)
Query: 44 SNLCKNCKRPGHFARECPNVA-----------------------------ICHNCGLPGH 74
SN C C R GH+ARECP IC+ CG GH
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGH 62
Query: 75 IASECTTKA-LCWNCREPGHMAGNCPN-----EGICHTCGKAGHRARDCTAPPLPPGDLR 128
+A +C + C+NC GH+A +C E C+ CGK GH ARDC D +
Sbjct: 63 LAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC-----DHADEQ 117
Query: 129 LCNNCYKQGHFAADCTNDKACNNCRKTGHLARDC--PNDPICNLCNVSGHVARHCP 182
C +C + GH DCT K C C +TGH+A +C ++ C C SGH+AR C
Sbjct: 118 KCYSCGEFGHIQKDCTKVK-CYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 172
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 18/136 (13%)
Query: 42 SQSNLCKNCKRPGHFARECP-NVAICHNCGLPGHIASECTT-----KALCWNCREPGHMA 95
S ++C C GH A++C C+NCG GHIA +C + C+NC +PGH+A
Sbjct: 49 SLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLA 108
Query: 96 GNC--PNEGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADC--TNDKACNN 151
+C +E C++CG+ GH +DCT C C + GH A +C T++ C
Sbjct: 109 RDCDHADEQKCYSCGEFGHIQKDCTKVK--------CYRCGETGHVAINCSKTSEVNCYR 160
Query: 152 CRKTGHLARDCPNDPI 167
C ++GHLAR+C +
Sbjct: 161 CGESGHLARECTIEAT 176
Score = 35.4 bits (80), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 168 CNLCNVSGHVARHCPKSGGLGDRYSGGSGARGSGGSGAR--GGGYRDIVCRNCQQLGHMS 225
C C SGH AR CP GG G + G + DI C C + GH++
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDI-CYRCGESGHLA 64
Query: 226 RDCMGPLMVCHNCGGRGHLAYECPS 250
+DC C+NCG GH+A +C
Sbjct: 65 KDCDLQEDACYNCGRGGHIAKDCKE 89
>sp|Q5R5R5|CNBP_PONAB Cellular nucleic acid-binding protein OS=Pongo abelii GN=CNBP PE=2
SV=1
Length = 177
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 80/176 (45%), Gaps = 43/176 (24%)
Query: 44 SNLCKNCKRPGHFARECPNVA-----------------------------ICHNCGLPGH 74
SN C C R GH+ARECP IC+ CG GH
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGH 62
Query: 75 IASECTTKA-LCWNCREPGHMAGNCPN-----EGICHTCGKAGHRARDCTAPPLPPGDLR 128
+A +C + C+NC GH+A +C E C+ CGK GH ARDC D +
Sbjct: 63 LAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC-----DHADEQ 117
Query: 129 LCNNCYKQGHFAADCTNDKACNNCRKTGHLARDC--PNDPICNLCNVSGHVARHCP 182
C +C + GH DCT K C C +TGH+A +C ++ C C SGH+AR C
Sbjct: 118 KCYSCGEFGHIQKDCTKVK-CYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 172
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 18/136 (13%)
Query: 42 SQSNLCKNCKRPGHFARECP-NVAICHNCGLPGHIASECTT-----KALCWNCREPGHMA 95
S ++C C GH A++C C+NCG GHIA +C + C+NC +PGH+A
Sbjct: 49 SLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLA 108
Query: 96 GNC--PNEGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADC--TNDKACNN 151
+C +E C++CG+ GH +DCT C C + GH A +C T++ C
Sbjct: 109 RDCDHADEQKCYSCGEFGHIQKDCTKVK--------CYRCGETGHVAINCSKTSEVNCYR 160
Query: 152 CRKTGHLARDCPNDPI 167
C ++GHLAR+C +
Sbjct: 161 CGESGHLARECTIEAT 176
Score = 35.4 bits (80), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 168 CNLCNVSGHVARHCPKSGGLGDRYSGGSGARGSGGSGAR--GGGYRDIVCRNCQQLGHMS 225
C C SGH AR CP GG G + G + DI C C + GH++
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDI-CYRCGESGHLA 64
Query: 226 RDCMGPLMVCHNCGGRGHLAYECPS 250
+DC C+NCG GH+A +C
Sbjct: 65 KDCDLQEDACYNCGRGGHIAKDCKE 89
>sp|P62633|CNBP_HUMAN Cellular nucleic acid-binding protein OS=Homo sapiens GN=CNBP PE=1
SV=1
Length = 177
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 80/176 (45%), Gaps = 43/176 (24%)
Query: 44 SNLCKNCKRPGHFARECPNVA-----------------------------ICHNCGLPGH 74
SN C C R GH+ARECP IC+ CG GH
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGH 62
Query: 75 IASECTTKA-LCWNCREPGHMAGNCPN-----EGICHTCGKAGHRARDCTAPPLPPGDLR 128
+A +C + C+NC GH+A +C E C+ CGK GH ARDC D +
Sbjct: 63 LAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC-----DHADEQ 117
Query: 129 LCNNCYKQGHFAADCTNDKACNNCRKTGHLARDC--PNDPICNLCNVSGHVARHCP 182
C +C + GH DCT K C C +TGH+A +C ++ C C SGH+AR C
Sbjct: 118 KCYSCGEFGHIQKDCTKVK-CYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 172
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 18/136 (13%)
Query: 42 SQSNLCKNCKRPGHFARECP-NVAICHNCGLPGHIASECTT-----KALCWNCREPGHMA 95
S ++C C GH A++C C+NCG GHIA +C + C+NC +PGH+A
Sbjct: 49 SLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLA 108
Query: 96 GNC--PNEGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADC--TNDKACNN 151
+C +E C++CG+ GH +DCT C C + GH A +C T++ C
Sbjct: 109 RDCDHADEQKCYSCGEFGHIQKDCTKVK--------CYRCGETGHVAINCSKTSEVNCYR 160
Query: 152 CRKTGHLARDCPNDPI 167
C ++GHLAR+C +
Sbjct: 161 CGESGHLARECTIEAT 176
Score = 35.4 bits (80), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 168 CNLCNVSGHVARHCPKSGGLGDRYSGGSGARGSGGSGAR--GGGYRDIVCRNCQQLGHMS 225
C C SGH AR CP GG G + G + DI C C + GH++
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDI-CYRCGESGHLA 64
Query: 226 RDCMGPLMVCHNCGGRGHLAYECPS 250
+DC C+NCG GH+A +C
Sbjct: 65 KDCDLQEDACYNCGRGGHIAKDCKE 89
>sp|P53996|CNBP_MOUSE Cellular nucleic acid-binding protein OS=Mus musculus GN=Cnbp PE=2
SV=2
Length = 178
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 80/177 (45%), Gaps = 44/177 (24%)
Query: 44 SNLCKNCKRPGHFARECPNVA-----------------------------ICHNCGLPGH 74
SN C C R GH+ARECP IC+ CG GH
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGH 62
Query: 75 IASECTTK--ALCWNCREPGHMAGNCPN-----EGICHTCGKAGHRARDCTAPPLPPGDL 127
+A +C + C+NC GH+A +C E C+ CGK GH ARDC D
Sbjct: 63 LAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC-----DHADE 117
Query: 128 RLCNNCYKQGHFAADCTNDKACNNCRKTGHLARDC--PNDPICNLCNVSGHVARHCP 182
+ C +C + GH DCT K C C +TGH+A +C ++ C C SGH+AR C
Sbjct: 118 QKCYSCGEFGHIQKDCTKVK-CYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 173
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 5/81 (6%)
Query: 47 CKNCKRPGHFAREC--PNVAICHNCGLPGHIASECTTKALCWNCREPGHMAGNC--PNEG 102
C NC +PGH AR+C + C++CG GHI +CT K C+ C E GH+A NC +E
Sbjct: 99 CYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCT-KVKCYRCGETGHVAINCSKTSEV 157
Query: 103 ICHTCGKAGHRARDCTAPPLP 123
C+ CG++GH AR+CT
Sbjct: 158 NCYRCGESGHLARECTIEATA 178
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 22/125 (17%)
Query: 42 SQSNLCKNCKRPGHFAREC--PNVAICHNCGLPGHIASECTT-----KALCWNCREPGHM 94
S ++C C GH A++C C+NCG GHIA +C + C+NC +PGH+
Sbjct: 49 SLPDICYRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHL 108
Query: 95 AGNC--PNEGICHTCGKAGHRARDCTAPPL----PPGDLRL---------CNNCYKQGHF 139
A +C +E C++CG+ GH +DCT G + + C C + GH
Sbjct: 109 ARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHL 168
Query: 140 AADCT 144
A +CT
Sbjct: 169 ARECT 173
>sp|Q8T8R1|Y3800_DROME CCHC-type zinc finger protein CG3800 OS=Drosophila melanogaster
GN=CG3800 PE=1 SV=1
Length = 165
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 73/167 (43%), Gaps = 27/167 (16%)
Query: 42 SQSNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECT------------TKALCWNCR 89
S S C C RPGHFAR+C G+ G + C+ C
Sbjct: 2 SMSATCYKCNRPGHFARDCSLGGGGGPGGVGGGGGGGGGGMRGNDGGGMRRNREKCYKCN 61
Query: 90 EPGHMAGNCPNEGI-CHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADC---TN 145
+ GH A CP E C+ C GH ++DCT P C C K GH+ +C N
Sbjct: 62 QFGHFARACPEEAERCYRCNGIGHISKDCTQADNP-----TCYRCNKTGHWVRNCPEAVN 116
Query: 146 DK-----ACNNCRKTGHLARDCP-NDPICNLCNVSGHVARHCPKSGG 186
++ +C C +TGH++++CP C C SGH+ R C + GG
Sbjct: 117 ERGPTNVSCYKCNRTGHISKNCPETSKTCYGCGKSGHLRRECDEKGG 163
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 71/174 (40%), Gaps = 47/174 (27%)
Query: 102 GICHTCGKAGHRARDCTAPPLPPG------------------------DLRLCNNCYKQG 137
C+ C + GH ARDC+ + C C + G
Sbjct: 5 ATCYKCNRPGHFARDCSLGGGGGPGGVGGGGGGGGGGMRGNDGGGMRRNREKCYKCNQFG 64
Query: 138 HFAADCTND-KACNNCRKTGHLARDCP--NDPICNLCNVSGHVARHCPKSGGLGDRYSGG 194
HFA C + + C C GH+++DC ++P C CN +GH R+CP++ + +R
Sbjct: 65 HFARACPEEAERCYRCNGIGHISKDCTQADNPTCYRCNKTGHWVRNCPEA--VNER---- 118
Query: 195 SGARGSGGSGARGGGYRDIVCRNCQQLGHMSRDCMGPLMVCHNCGGRGHLAYEC 248
G ++ C C + GH+S++C C+ CG GHL EC
Sbjct: 119 --------------GPTNVSCYKCNRTGHISKNCPETSKTCYGCGKSGHLRREC 158
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 44/114 (38%), Gaps = 34/114 (29%)
Query: 145 NDKACNNCRKTGHLARDCPNDPI-CNLCNVSGHVARHCPKSGGLGDRYSGGSGARGSGGS 203
N + C C + GH AR CP + C CN GH+++ C ++
Sbjct: 53 NREKCYKCNQFGHFARACPEEAERCYRCNGIGHISKDCTQAD------------------ 94
Query: 204 GARGGGYRDIVCRNCQQLGHMSRDC------MGPLMV-CHNCGGRGHLAYECPS 250
+ C C + GH R+C GP V C+ C GH++ CP
Sbjct: 95 --------NPTCYRCNKTGHWVRNCPEAVNERGPTNVSCYKCNRTGHISKNCPE 140
Score = 31.2 bits (69), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 215 CRNCQQLGHMSRDCMGPLMVCHNCGGRGHLAYECPSG 251
C C Q GH +R C C+ C G GH++ +C
Sbjct: 57 CYKCNQFGHFARACPEEAERCYRCNGIGHISKDCTQA 93
>sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain-containing protein 13 OS=Homo sapiens
GN=ZCCHC13 PE=2 SV=1
Length = 166
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 80 TTKALCWNCREPGHMAGNCPNEG-ICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGH 138
T C+ C E G A NC G IC+ CG++GH A+DC P + C C + GH
Sbjct: 42 TLSYTCYCCGESGRNAKNCVLLGNICYNCGRSGHIAKDCKDPKRE--RRQHCYTCGRLGH 99
Query: 139 FAADC--TNDKACNNCRKTGHLARDCPNDPICNLCNVSGHVARHCPKS 184
A DC ++ C +C K GH+ +DC C C GHVA +C K+
Sbjct: 100 LARDCDRQKEQKCYSCGKLGHIQKDCAQVK-CYRCGEIGHVAINCSKA 146
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 10/90 (11%)
Query: 45 NLCKNCKRPGHFARECPNV-----AICHNCGLPGHIASEC--TTKALCWNCREPGHMAGN 97
N+C NC R GH A++C + C+ CG GH+A +C + C++C + GH+ +
Sbjct: 65 NICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCDRQKEQKCYSCGKLGHIQKD 124
Query: 98 CPNEGICHTCGKAGHRARDCTAPPLPPGDL 127
C + C+ CG+ GH A +C+ PG L
Sbjct: 125 CA-QVKCYRCGEIGHVAINCSKA--RPGQL 151
Score = 44.3 bits (103), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 57/155 (36%), Gaps = 58/155 (37%)
Query: 103 ICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADCTNDK-----ACNNCRKTGH 157
C+ CG++G A++C +C NC + GH A DC + K C C + GH
Sbjct: 46 TCYCCGESGRNAKNCVLLG------NICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGH 99
Query: 158 LARDCPNDPICNLCNVSGHVARHCPKSGGLGDRYSGGSGARGSGGSGARGGGYRDIVCRN 217
LARDC ++ C +
Sbjct: 100 LARDCDRQ---------------------------------------------KEQKCYS 114
Query: 218 CQQLGHMSRDCMGPLMVCHNCGGRGHLAYECPSGR 252
C +LGH+ +DC + C+ CG GH+A C R
Sbjct: 115 CGKLGHIQKDC--AQVKCYRCGEIGHVAINCSKAR 147
Score = 32.0 bits (71), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 199 GSGGSGARGGGYRDIVCRNCQQLGHMSRDCMGPL----MVCHNCGGRGHLAYECPSGRFL 254
G G A+ +C NC + GH+++DC P C+ CG GHLA +C +
Sbjct: 51 GESGRNAKNCVLLGNICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCDRQKEQ 110
Query: 255 DRYS 258
YS
Sbjct: 111 KCYS 114
>sp|Q94C69|CSP3_ARATH Cold shock domain-containing protein 3 OS=Arabidopsis thaliana
GN=CSP3 PE=2 SV=1
Length = 301
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 68/203 (33%), Gaps = 67/203 (33%)
Query: 47 CKNCKRPGHFARECP-----------------NVAICHNCGLPGHIASECTTKAL----- 84
C NC GH A++C C+ CG GH A +C
Sbjct: 96 CFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGGNSGG 155
Query: 85 -------CWNCREPGHMAGNC----------------PNEGICHTCGKAGHRARDC--TA 119
C++C E GH+A +C C+ CG GH ARDC
Sbjct: 156 GGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQNG 215
Query: 120 PPLPPGDLRLCNNCYKQGHFAADCTND---------KACNNCRKTGHLARDCP------- 163
G C C GH A CT+ +AC C TGHLARDC
Sbjct: 216 GGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTGHLARDCDRRGSGSS 275
Query: 164 ----NDPICNLCNVSGHVARHCP 182
C +C GH AR C
Sbjct: 276 GGGGGSNKCFICGKEGHFARECT 298
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 44/104 (42%), Gaps = 29/104 (27%)
Query: 47 CKNCKRPGHFAREC---------PNVAICHNCGLPGHIASECTTKA---------LCWNC 88
C C GHFAR+C + C+ CG GHIA CT+K C+ C
Sbjct: 198 CYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGGGGRACYEC 257
Query: 89 REPGHMAGNCPNEGI-----------CHTCGKAGHRARDCTAPP 121
GH+A +C G C CGK GH AR+CT+
Sbjct: 258 GGTGHLARDCDRRGSGSSGGGGGSNKCFICGKEGHFARECTSVA 301
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 73/227 (32%), Gaps = 84/227 (37%)
Query: 85 CWNCREPGHMAGNCPNEGI-----------------CHTCGKAGHRARDC-----TAPPL 122
C+NC E GHMA +C C+ CG GH ARDC
Sbjct: 96 CFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGGNSGG 155
Query: 123 PPGDLRLCNNCYKQGHFAADC----------------TNDKACNNCRKTGHLARDC---- 162
G R C +C + GH A DC + C C GH ARDC
Sbjct: 156 GGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQNG 215
Query: 163 -----PNDPICNLCNVSGHVARHC----PKSGGLGDRYSGGSGARGSGGSGARGGGYRDI 213
C C GH+A+ C P GG G R
Sbjct: 216 GGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGGGGR----------------------- 252
Query: 214 VCRNCQQLGHMSRDC----------MGPLMVCHNCGGRGHLAYECPS 250
C C GH++RDC G C CG GH A EC S
Sbjct: 253 ACYECGGTGHLARDCDRRGSGSSGGGGGSNKCFICGKEGHFARECTS 299
>sp|Q9HFF2|YL92_SCHPO Uncharacterized protein C683.02c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC683.02c PE=4 SV=1
Length = 218
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 21/117 (17%)
Query: 18 DRKIRSDRFSYRDAPYRRGSRRGYSQSNLCKNCKRPGHFARECP----NVAICHNCGLPG 73
D + + R YR RR ++R ++ C C++ GH ++CP NV+IC CG
Sbjct: 54 DERQKKKRSEYR--RLRRINQR--NRDKFCFACRQQGHIVQDCPEAKDNVSICFRCGSKE 109
Query: 74 HIASECTTK-----ALCWNCREPGHMAGNC--------PNEGICHTCGKAGHRARDC 117
H + C+ K A C+ C E GH++G C P G C C H A+DC
Sbjct: 110 HSLNACSKKGPLKFAKCFICHENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDC 166
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 48/121 (39%), Gaps = 18/121 (14%)
Query: 84 LCWNCREPGHMAGNCP----NEGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHF 139
C+ CR+ GH+ +CP N IC CG H C+ P C C++ GH
Sbjct: 78 FCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKK--GPLKFAKCFICHENGHL 135
Query: 140 AADCTNDKA--------CNNCRKTGHLARDCPNDPICNLCNVS-GHVARHCPKSGGLGDR 190
+ C + C C HLA+DC N +VS GHV +G D
Sbjct: 136 SGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQ---VNKDDVSFGHVVGVAGTTGADEDV 192
Query: 191 Y 191
Y
Sbjct: 193 Y 193
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 18/96 (18%)
Query: 146 DKACNNCRKTGHLARDCP----NDPICNLCNVSGHVARHCPKSGGLG---------DRYS 192
DK C CR+ GH+ +DCP N IC C H C K G L + +
Sbjct: 76 DKFCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHENGHL 135
Query: 193 GGSGARGSGGSGARGGGYRDIVCRNCQQLGHMSRDC 228
G + G +GG C+ C + H+++DC
Sbjct: 136 SGQCEQNPKGLYPKGG-----CCKFCSSVHHLAKDC 166
>sp|Q9P795|AIR1_SCHPO Protein air1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=air1 PE=1 SV=2
Length = 315
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 59/141 (41%), Gaps = 19/141 (13%)
Query: 42 SQSNLCKNCKRPGHFARECPNVAICHNCG-LPGHIASECTTKALCWNCREPGHMAGNCPN 100
S+S +C NCK GH +++CP+V +C CG + HI+ C C NC GH+A C
Sbjct: 86 SESIVCHNCKGNGHISKDCPHV-LCTTCGAIDDHISVRCPWTKKCMNCGLLGHIAARCSE 144
Query: 101 -----EGICHTCGKAGHRARDCTAPP-----------LPPGDLR-LCNNCYKQGHFAADC 143
+C TC H + C + ++R C NC HF DC
Sbjct: 145 PRKRGPRVCRTCHTDTHTSSTCPLIWRYYVEKEHPVRIDVSEVRKFCYNCASDEHFGDDC 204
Query: 144 TNDKACNNCRKTGHLARDCPN 164
T N T +CP+
Sbjct: 205 TLPSRSNYPESTAFCEANCPS 225
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 12/94 (12%)
Query: 55 HFARECPNVAICHNCGLPGHIASECTTKALCWNC-REPGHMAGNCPNEGICHTCGKAGHR 113
+F + +CHNC GHI+ +C LC C H++ CP C CG GH
Sbjct: 80 YFGSDPSESIVCHNCKGNGHISKDC-PHVLCTTCGAIDDHISVRCPWTKKCMNCGLLGHI 138
Query: 114 ARDCTAP----PLPPGDLRLCNNCYKQGHFAADC 143
A C+ P P R+C C+ H ++ C
Sbjct: 139 AARCSEPRKRGP------RVCRTCHTDTHTSSTC 166
Score = 39.7 bits (91), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 34/117 (29%)
Query: 138 HFAADCTNDKACNNCRKTGHLARDCPNDPICNLCN-VSGHVARHCPKSGGLGDRYSGGSG 196
+F +D + C+NC+ GH+++DCP+ +C C + H++ CP +
Sbjct: 80 YFGSDPSESIVCHNCKGNGHISKDCPH-VLCTTCGAIDDHISVRCPWTKK---------- 128
Query: 197 ARGSGGSGARGGGYRDIVCRNCQQLGHMSRDCMGPLM----VCHNCGGRGHLAYECP 249
C NC LGH++ C P VC C H + CP
Sbjct: 129 ------------------CMNCGLLGHIAARCSEPRKRGPRVCRTCHTDTHTSSTCP 167
>sp|A1L2T6|ZCHC7_XENLA Zinc finger CCHC domain-containing protein 7 OS=Xenopus laevis
GN=zcchc7 PE=2 SV=2
Length = 563
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 57/138 (41%), Gaps = 26/138 (18%)
Query: 31 APYRRGSRRGYSQSNLCKNCKRPGHFARECP---NVAICHNCGLPGHIASECTTKALCWN 87
P RR +R ++ +C+NC + GH ++ CP + C CG GH + C ++ C N
Sbjct: 251 TPLRRSNRYYTDKNVVCRNCDKRGHLSKNCPVPKKLPACCLCGERGHYQNSCPSR-YCLN 309
Query: 88 CREPGHMAGNCPNEG----ICHTCGKAGHRARDC-----------TAPPLPP-------G 125
C PGH C CH C GH A C A P+
Sbjct: 310 CFLPGHFFKECIERAYWRKTCHRCSMPGHYADACPEIWRQYHLTIKAGPIKKPKSHSGQK 369
Query: 126 DLRLCNNCYKQGHFAADC 143
D+ C NC K+GH +C
Sbjct: 370 DIVYCCNCAKKGHCIYEC 387
Score = 39.7 bits (91), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 211 RDIVCRNCQQLGHMSRDCMGP--LMVCHNCGGRGHLAYECPS 250
+++VCRNC + GH+S++C P L C CG RGH CPS
Sbjct: 263 KNVVCRNCDKRGHLSKNCPVPKKLPACCLCGERGHYQNSCPS 304
Score = 38.5 bits (88), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 39/109 (35%), Gaps = 35/109 (32%)
Query: 148 ACNNCRKTGHLARDCP---NDPICNLCNVSGHVARHCPKSGGLGDRYSGGSGARGSGGSG 204
C NC K GHL+++CP P C LC GH CP RY
Sbjct: 266 VCRNCDKRGHLSKNCPVPKKLPACCLCGERGHYQNSCPS------RY------------- 306
Query: 205 ARGGGYRDIVCRNCQQLGHMSRDCMGPLM---VCHNCGGRGHLAYECPS 250
C NC GH ++C+ CH C GH A CP
Sbjct: 307 ----------CLNCFLPGHFFKECIERAYWRKTCHRCSMPGHYADACPE 345
>sp|Q8N567|ZCHC9_HUMAN Zinc finger CCHC domain-containing protein 9 OS=Homo sapiens
GN=ZCCHC9 PE=2 SV=2
Length = 271
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 54/132 (40%), Gaps = 32/132 (24%)
Query: 84 LCWNCREPGHMAGNCP--------NEGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYK 135
+C++CR+PGH +CP GIC+ CG H C A P
Sbjct: 129 VCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDP---------ALG 179
Query: 136 QGHFAADCTNDKACNNCRKTGHLARDCPNDPI--------CNLCNVSGHVARHCPKSGGL 187
+ FA C C + GHL+R CP++P C LC H+ + CP+S
Sbjct: 180 EFPFAK-------CFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPESQNS 232
Query: 188 GDRYSGGSGARG 199
+ G A+G
Sbjct: 233 ERMVTVGRWAKG 244
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 26/98 (26%)
Query: 46 LCKNCKRPGHFARECP--------NVAICHNCGLPGHIASECTTK----------ALCWN 87
+C +C++PGH +CP IC+ CG H ++C K A C+
Sbjct: 129 VCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 188
Query: 88 CREPGHMAGNCPNE--------GICHTCGKAGHRARDC 117
C E GH++ +CP+ G C CG H +DC
Sbjct: 189 CGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDC 226
>sp|Q05313|GAG_FIVWO Gag polyprotein OS=Feline immunodeficiency virus (isolate Wo)
GN=gag PE=3 SV=1
Length = 450
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 27/34 (79%)
Query: 46 LCKNCKRPGHFARECPNVAICHNCGLPGHIASEC 79
+C NCKRPGH AR+C +V C+ CG PGH+A++C
Sbjct: 376 VCFNCKRPGHLARQCRDVKKCNKCGKPGHLAAKC 409
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 17/129 (13%)
Query: 6 RSRSRSRSRSPLDRKIRSDRFSYRDAPYRRGSRRGYSQSNLCKNCKRP-GHFAREC---P 61
R ++ S +DR A + ++ S +N +CK+ H E
Sbjct: 281 RQGAKEDYSSFIDRLFAQIDQEQNTAEVKLYLKQSLSIANANADCKKAMSHLKPESTLEE 340
Query: 62 NVAICHNCGLPGH---IASECTTKA----------LCWNCREPGHMAGNCPNEGICHTCG 108
+ C G PG+ + +E TK +C+NC+ PGH+A C + C+ CG
Sbjct: 341 KLRACQEIGFPGYKMQLLAEALTKVQVVQSKGPGPVCFNCKRPGHLARQCRDVKKCNKCG 400
Query: 109 KAGHRARDC 117
K GH A C
Sbjct: 401 KPGHLAAKC 409
Score = 37.0 bits (84), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 129 LCNNCYKQGHFAADCTNDKACNNCRKTGHLARDC 162
+C NC + GH A C + K CN C K GHLA C
Sbjct: 376 VCFNCKRPGHLARQCRDVKKCNKCGKPGHLAAKC 409
Score = 36.2 bits (82), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 30/74 (40%)
Query: 112 HRARDCTAPPLPPGDLRLCNNCYKQGHFAADCTNDKACNNCRKTGHLARDCPNDPICNLC 171
+ R C P ++L + C NC++ GHLAR C + CN C
Sbjct: 340 EKLRACQEIGFPGYKMQLLAEALTKVQVVQSKGPGPVCFNCKRPGHLARQCRDVKKCNKC 399
Query: 172 NVSGHVARHCPKSG 185
GH+A C + G
Sbjct: 400 GKPGHLAAKCWQGG 413
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 214 VCRNCQQLGHMSRDCMGPLMVCHNCGGRGHLAYECPSG 251
VC NC++ GH++R C + C+ CG GHLA +C G
Sbjct: 376 VCFNCKRPGHLARQCRD-VKKCNKCGKPGHLAAKCWQG 412
>sp|P16087|GAG_FIVPE Gag polyprotein OS=Feline immunodeficiency virus (isolate Petaluma)
GN=gag PE=3 SV=1
Length = 450
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 18/89 (20%)
Query: 46 LCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKALCWNCREPGHMAGNCPNEGICH 105
+C NCK+PGH AR+C V C+ CG PGH+A++ CW GN N G
Sbjct: 376 VCFNCKKPGHLARQCREVKKCNKCGKPGHLAAK------CWQ--------GNRKNSG-NW 420
Query: 106 TCGKAG---HRARDCTAPPLPPGDLRLCN 131
G+A ++ + P PP + +L +
Sbjct: 421 KAGRAAAPVNQMQQAVMPSAPPMEEKLLD 449
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 17/129 (13%)
Query: 6 RSRSRSRSRSPLDRKIRSDRFSYRDAPYRRGSRRGYSQSNLCKNCKRP-GHFAREC---P 61
R ++ S +DR A + ++ S +N +CK+ H E
Sbjct: 281 RQGAKEDYSSFIDRLFAQIDQEQNTAEVKLYLKQSLSIANANADCKKAMSHLKPESTLEE 340
Query: 62 NVAICHNCGLPGH---IASECTTKA----------LCWNCREPGHMAGNCPNEGICHTCG 108
+ C G PG+ + +E TK +C+NC++PGH+A C C+ CG
Sbjct: 341 KLRACQEIGSPGYKMQLLAEALTKVQVVQSKGSGPVCFNCKKPGHLARQCREVKKCNKCG 400
Query: 109 KAGHRARDC 117
K GH A C
Sbjct: 401 KPGHLAAKC 409
Score = 37.7 bits (86), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 19/34 (55%)
Query: 129 LCNNCYKQGHFAADCTNDKACNNCRKTGHLARDC 162
+C NC K GH A C K CN C K GHLA C
Sbjct: 376 VCFNCKKPGHLARQCREVKKCNKCGKPGHLAAKC 409
Score = 36.2 bits (82), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 19/34 (55%)
Query: 148 ACNNCRKTGHLARDCPNDPICNLCNVSGHVARHC 181
C NC+K GHLAR C CN C GH+A C
Sbjct: 376 VCFNCKKPGHLARQCREVKKCNKCGKPGHLAAKC 409
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 214 VCRNCQQLGHMSRDCMGPLMVCHNCGGRGHLAYECPSG 251
VC NC++ GH++R C + C+ CG GHLA +C G
Sbjct: 376 VCFNCKKPGHLARQCR-EVKKCNKCGKPGHLAAKCWQG 412
>sp|P19027|GAG_FIVSD Gag polyprotein OS=Feline immunodeficiency virus (strain San Diego)
GN=gag PE=3 SV=1
Length = 450
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 27/34 (79%)
Query: 46 LCKNCKRPGHFARECPNVAICHNCGLPGHIASEC 79
+C NCK+PGH AR+C +V C+ CG PGH+A++C
Sbjct: 376 VCFNCKKPGHLARQCRDVKKCNKCGKPGHLAAKC 409
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 13/65 (20%)
Query: 66 CHNCGLPGH---IASECTTKA----------LCWNCREPGHMAGNCPNEGICHTCGKAGH 112
C G PG+ + +E TK +C+NC++PGH+A C + C+ CGK GH
Sbjct: 345 CQEIGSPGYKMQLLAEALTKVQVVQSKGSGPVCFNCKKPGHLARQCRDVKKCNKCGKPGH 404
Query: 113 RARDC 117
A C
Sbjct: 405 LAAKC 409
Score = 38.5 bits (88), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 20/34 (58%)
Query: 129 LCNNCYKQGHFAADCTNDKACNNCRKTGHLARDC 162
+C NC K GH A C + K CN C K GHLA C
Sbjct: 376 VCFNCKKPGHLARQCRDVKKCNKCGKPGHLAAKC 409
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 148 ACNNCRKTGHLARDCPNDPICNLCNVSGHVARHCPKSG 185
C NC+K GHLAR C + CN C GH+A C + G
Sbjct: 376 VCFNCKKPGHLARQCRDVKKCNKCGKPGHLAAKCWQGG 413
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 214 VCRNCQQLGHMSRDCMGPLMVCHNCGGRGHLAYECPSG 251
VC NC++ GH++R C + C+ CG GHLA +C G
Sbjct: 376 VCFNCKKPGHLARQCRD-VKKCNKCGKPGHLAAKCWQG 412
>sp|P40507|AIR1_YEAST Protein AIR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=AIR1 PE=1 SV=1
Length = 360
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 47/120 (39%), Gaps = 11/120 (9%)
Query: 47 CKNCKRPGHFARECPNVAICHNCG-LPGHIASECTTKALCWNCREPGHMAGNCPNEG--- 102
C NC + GH R CP+V IC CG + H + C +C NC GH CP++
Sbjct: 76 CNNCSQRGHLKRNCPHV-ICTYCGFMDDHYSQHCPKAIICTNCNANGHYKSQCPHKWKKV 134
Query: 103 ICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADCTNDKACNNCRKTGHLARDC 162
C C H C P + L + QG F C NC GH DC
Sbjct: 135 FCTLCNSKRHSRERC--PSIWRSYLLKTKDA-NQGDFDFQTV---FCYNCGNAGHFGDDC 188
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 49/147 (33%), Gaps = 37/147 (25%)
Query: 85 CWNCREPGHMAGNCPNEGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADCT 144
C NC + GH+ NCP+ IC CG + H++ C
Sbjct: 76 CNNCSQRGHLKRNCPH-VICTYCG-------------------------FMDDHYSQHCP 109
Query: 145 NDKACNNCRKTGHLARDCPN---DPICNLCNVSGHVARHCPKSGGLGDRYSGGSGARGSG 201
C NC GH CP+ C LCN H CP + Y + G
Sbjct: 110 KAIICTNCNANGHYKSQCPHKWKKVFCTLCNSKRHSRERCP---SIWRSYLLKTKDANQG 166
Query: 202 GSGARGGGYRDIVCRNCQQLGHMSRDC 228
++ + C NC GH DC
Sbjct: 167 -----DFDFQTVFCYNCGNAGHFGDDC 188
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 46 LCKNCKRPGHFARECPN---VAICHNCGLPGHIASECTTKALCWNCREPGHMAGNCPNEG 102
+C NC GH+ +CP+ C C H C + + + G+ +
Sbjct: 113 ICTNCNANGHYKSQCPHKWKKVFCTLCNSKRHSRERCPSIWRSYLLKTKDANQGDFDFQT 172
Query: 103 I-CHTCGKAGHRARDC 117
+ C+ CG AGH DC
Sbjct: 173 VFCYNCGNAGHFGDDC 188
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 35/93 (37%), Gaps = 21/93 (22%)
Query: 165 DPICNLCNVSGHVARHCPKS-----GGLGDRYSGGSGARGSGGSGARGGGYRDIVCRNCQ 219
+P CN C+ GH+ R+CP G + D YS + I+C NC
Sbjct: 73 EPKCNNCSQRGHLKRNCPHVICTYCGFMDDHYSQHCP--------------KAIICTNCN 118
Query: 220 QLGHMSRDC--MGPLMVCHNCGGRGHLAYECPS 250
GH C + C C + H CPS
Sbjct: 119 ANGHYKSQCPHKWKKVFCTLCNSKRHSRERCPS 151
>sp|P31821|GAG_FIVT2 Gag polyprotein OS=Feline immunodeficiency virus (isolate TM2)
GN=gag PE=3 SV=1
Length = 449
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 46 LCKNCKRPGHFARECPNVAICHNCGLPGHIASEC 79
+C NCK+PGH AR+C C+NCG PGH+A+ C
Sbjct: 376 VCFNCKKPGHLARQCKEAKRCNNCGKPGHLAANC 409
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 40 GYSQSNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKALCWNCREPGHMAGNC 98
GY L + R + P + +C NC PGH+A +C C NC +PGH+A NC
Sbjct: 352 GYKMQLLAEALTRVQTVQTKGPRL-VCFNCKKPGHLARQCKEAKRCNNCGKPGHLAANC 409
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 17/120 (14%)
Query: 15 SPLDRKIRSDRFSYRDAPYRRGSRRGYSQSNLCKNCKRP-GHFAREC---PNVAICHNCG 70
S +DR A + ++ S +N +CKR H E + C G
Sbjct: 290 SFIDRLFAQIDQEQNTAEVKLYLKQSLSIANANPDCKRAMSHLKPESTLEEKLRACQEVG 349
Query: 71 LPGH---IASECTTKA----------LCWNCREPGHMAGNCPNEGICHTCGKAGHRARDC 117
PG+ + +E T+ +C+NC++PGH+A C C+ CGK GH A +C
Sbjct: 350 SPGYKMQLLAEALTRVQTVQTKGPRLVCFNCKKPGHLARQCKEAKRCNNCGKPGHLAANC 409
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 21/34 (61%)
Query: 129 LCNNCYKQGHFAADCTNDKACNNCRKTGHLARDC 162
+C NC K GH A C K CNNC K GHLA +C
Sbjct: 376 VCFNCKKPGHLARQCKEAKRCNNCGKPGHLAANC 409
Score = 37.0 bits (84), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 148 ACNNCRKTGHLARDCPNDPICNLCNVSGHVARHCPKSG 185
C NC+K GHLAR C CN C GH+A +C + G
Sbjct: 376 VCFNCKKPGHLARQCKEAKRCNNCGKPGHLAANCWQGG 413
Score = 34.7 bits (78), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 213 IVCRNCQQLGHMSRDCMGPLMVCHNCGGRGHLAYECPSG 251
+VC NC++ GH++R C C+NCG GHLA C G
Sbjct: 375 LVCFNCKKPGHLARQC-KEAKRCNNCGKPGHLAANCWQG 412
>sp|O12158|POL_HV192 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype C (isolate 92BR025) GN=gag-pol PE=1 SV=2
Length = 1431
Score = 47.8 bits (112), Expect = 7e-05, Method: Composition-based stats.
Identities = 39/111 (35%), Positives = 46/111 (41%), Gaps = 19/111 (17%)
Query: 47 CKNCKR---PGHFARECPNVAICHNCGLPGHIA---SECTTKALCWNCREPGHMAGNC-- 98
CK R PG E + C G PGH A +E +K N NC
Sbjct: 328 CKTILRALGPGASLEEM--MTACQGVGGPGHKARVLAEAMSKV---NNTNIMMQRSNCKG 382
Query: 99 PNEGI-CHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADCTNDKA 148
P I C CGK GH AR+C AP + C C K+GH DCT +A
Sbjct: 383 PKRTIKCFNCGKEGHLARNCRAP-----RKKGCWKCGKEGHQVKDCTERQA 428
Score = 40.8 bits (94), Expect = 0.011, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 34 RRGSRRGYSQSNLCKNCKRPGHFAREC--PNVAICHNCGLPGHIASECTTK 82
+R + +G ++ C NC + GH AR C P C CG GH +CT +
Sbjct: 376 QRSNCKGPKRTIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQVKDCTER 426
Score = 39.3 bits (90), Expect = 0.025, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 208 GGYRDIVCRNCQQLGHMSRDCMGPLMV-CHNCGGRGHLAYEC 248
G R I C NC + GH++R+C P C CG GH +C
Sbjct: 382 GPKRTIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQVKDC 423
Score = 39.3 bits (90), Expect = 0.026, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 29/80 (36%), Gaps = 25/80 (31%)
Query: 104 CHTCGKAGHRAR-------------------DCTAPPLPPGDLRLCNNCYKQGHFAADC- 143
C G GH+AR +C P C NC K+GH A +C
Sbjct: 348 CQGVGGPGHKARVLAEAMSKVNNTNIMMQRSNCKGPKRTIK----CFNCGKEGHLARNCR 403
Query: 144 -TNDKACNNCRKTGHLARDC 162
K C C K GH +DC
Sbjct: 404 APRKKGCWKCGKEGHQVKDC 423
Score = 32.3 bits (72), Expect = 3.6, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 195 SGARGSGGSGARGGGYRDIVCR-NCQQLGHMSRDCMGP--LMVCHNCGGRGHLAYECPSG 251
+ +G GG G + + + + N + +C GP + C NCG GHLA C +
Sbjct: 346 TACQGVGGPGHKARVLAEAMSKVNNTNIMMQRSNCKGPKRTIKCFNCGKEGHLARNCRAP 405
Query: 252 R 252
R
Sbjct: 406 R 406
>sp|Q77373|POL_HV1AN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate ANT70) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 47.8 bits (112), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 66 CHNCGLPGHIASECTT--KALCWNCREPGHMAGNCPN--EGICHTCGKAGHRARDC---T 118
C NCG GHIA C K CW C + GH +C N + GH AR T
Sbjct: 396 CFNCGKEGHIARNCRAPRKKGCWKCGQEGHQMKDCRNGKQFFRQILASGGHEARQLCAET 455
Query: 119 APPLPPGD 126
+ P+ P D
Sbjct: 456 STPISPTD 463
Score = 41.6 bits (96), Expect = 0.006, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 104 CHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADCTNDK 147
C CGK GH AR+C AP + C C ++GH DC N K
Sbjct: 396 CFNCGKEGHIARNCRAP-----RKKGCWKCGQEGHQMKDCRNGK 434
Score = 38.9 bits (89), Expect = 0.041, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 213 IVCRNCQQLGHMSRDCMGPLMV-CHNCGGRGHLAYECPSGR 252
I C NC + GH++R+C P C CG GH +C +G+
Sbjct: 394 IKCFNCGKEGHIARNCRAPRKKGCWKCGQEGHQMKDCRNGK 434
>sp|P04584|POL_HV2RO Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype
A (isolate ROD) GN=gag-pol PE=1 SV=3
Length = 1464
Score = 47.8 bits (112), Expect = 9e-05, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 31/64 (48%), Gaps = 10/64 (15%)
Query: 66 CHNCGLPGHIASECTT--KALCWNCREPGHMAGNCPNE--GICHTCGKAGHRARDCTAPP 121
C NCG GH A +C + CW C +PGH+ NCP+ G T G G AP
Sbjct: 391 CWNCGKEGHSARQCRAPRRQGCWKCGKPGHIMTNCPDRQAGFLRT-GPLGKE-----APQ 444
Query: 122 LPPG 125
LP G
Sbjct: 445 LPRG 448
Score = 43.9 bits (102), Expect = 0.001, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 104 CHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADCTNDKACNNCRKTGHLARDCP 163
C CGK GH AR C AP + C C K GH +C + +A +TG L ++ P
Sbjct: 391 CWNCGKEGHSARQCRAP-----RRQGCWKCGKPGHIMTNCPDRQA--GFLRTGPLGKEAP 443
Query: 164 NDP 166
P
Sbjct: 444 QLP 446
Score = 42.0 bits (97), Expect = 0.004, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 47 CKNCKRPGHFAREC--PNVAICHNCGLPGHIASEC 79
C NC + GH AR+C P C CG PGHI + C
Sbjct: 391 CWNCGKEGHSARQCRAPRRQGCWKCGKPGHIMTNC 425
Score = 37.0 bits (84), Expect = 0.14, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 215 CRNCQQLGHMSRDCMGP-LMVCHNCGGRGHLAYECP 249
C NC + GH +R C P C CG GH+ CP
Sbjct: 391 CWNCGKEGHSARQCRAPRRQGCWKCGKPGHIMTNCP 426
Score = 36.6 bits (83), Expect = 0.20, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
Query: 149 CNNCRKTGHLARDC--PNDPICNLCNVSGHVARHCPKSGGLGDRYSG 193
C NC K GH AR C P C C GH+ +CP DR +G
Sbjct: 391 CWNCGKEGHSARQCRAPRRQGCWKCGKPGHIMTNCP------DRQAG 431
>sp|Q79666|POL_HV1MV Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate MVP5180) GN=gag-pol PE=3 SV=3
Length = 1446
Score = 47.4 bits (111), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 47/113 (41%), Gaps = 21/113 (18%)
Query: 104 CHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADCTNDKACNNCRKTGHLARDCP 163
C CGK GH A++C AP R C C ++GH DC N + N R+ LA
Sbjct: 396 CFNCGKEGHIAKNCRAP-----RKRGCWKCGQEGHQMKDCKNGRQANFFREV--LAS--- 445
Query: 164 NDPICNLCNVSGHVARHCPKSGGLGDRYSGGSGARGSGGSGARGGGYRDI-VC 215
GH AR + + G G+ G+ S + GG R + +C
Sbjct: 446 ----------GGHEARQLCAETSVPISPTNGGGSEGTRESESEGGSGRAVPIC 488
Score = 44.3 bits (103), Expect = 9e-04, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
Query: 66 CHNCGLPGHIASECTT--KALCWNCREPGHMAGNCPNEGICH----TCGKAGHRARDC-- 117
C NCG GHIA C K CW C + GH +C N + GH AR
Sbjct: 396 CFNCGKEGHIAKNCRAPRKRGCWKCGQEGHQMKDCKNGRQANFFREVLASGGHEARQLCA 455
Query: 118 -TAPPLPP 124
T+ P+ P
Sbjct: 456 ETSVPISP 463
Score = 39.3 bits (90), Expect = 0.032, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 213 IVCRNCQQLGHMSRDCMGPLMV-CHNCGGRGHLAYECPSGR 252
I C NC + GH++++C P C CG GH +C +GR
Sbjct: 394 IKCFNCGKEGHIAKNCRAPRKRGCWKCGQEGHQMKDCKNGR 434
>sp|P05895|POL_SIVVT Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM TYO-1) GN=gag-pol PE=3 SV=2
Length = 1467
Score = 47.4 bits (111), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 32/70 (45%), Gaps = 12/70 (17%)
Query: 204 GARGGGYRDIVCRNCQQLGHMSRDCMGPL-MVCHNCGGRGHLAYECP-----------SG 251
G RG + C NC + GHM R C P M C CG GHLA +C G
Sbjct: 393 GQRGRPRPPVKCYNCGKFGHMQRQCPEPRKMRCLKCGKPGHLAKDCRGQVNFFRVWTVDG 452
Query: 252 RFLDRYSRRY 261
+++SRRY
Sbjct: 453 GKTEKFSRRY 462
Score = 43.5 bits (101), Expect = 0.001, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 34 RRGSRRGYSQSNL-CKNCKRPGHFARECPN--VAICHNCGLPGHIASEC 79
++G +RG + + C NC + GH R+CP C CG PGH+A +C
Sbjct: 390 QQGGQRGRPRPPVKCYNCGKFGHMQRQCPEPRKMRCLKCGKPGHLAKDC 438
Score = 39.3 bits (90), Expect = 0.031, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 8/81 (9%)
Query: 66 CHNCGLPGH---IASECTTKALCWNCREPGHMAGNCPNEGICHTCGKAGHRARDCTAPPL 122
C G P + + +E N + G G C+ CGK GH R C P
Sbjct: 363 CQGVGGPSYKAKVMAEMMQNMQSQNMMQQGGQRGRPRPPVKCYNCGKFGHMQRQCPEPR- 421
Query: 123 PPGDLRLCNNCYKQGHFAADC 143
+R C C K GH A DC
Sbjct: 422 ---KMR-CLKCGKPGHLAKDC 438
Score = 35.4 bits (80), Expect = 0.39, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 149 CNNCRKTGHLARDCPNDP---ICNLCNVSGHVARHC 181
C NC K GH+ R CP +P C C GH+A+ C
Sbjct: 404 CYNCGKFGHMQRQCP-EPRKMRCLKCGKPGHLAKDC 438
Score = 33.9 bits (76), Expect = 1.2, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 29/98 (29%)
Query: 134 YKQGHFAADCTNDKACNNCRKTGHLARDCPNDPI-CNLCNVSGHVARHCPKSGGLGDRYS 192
YK A N ++ N ++ G R P P+ C C GH+ R CP+
Sbjct: 371 YKAKVMAEMMQNMQSQNMMQQGGQRGR--PRPPVKCYNCGKFGHMQRQCPEP-------- 420
Query: 193 GGSGARGSGGSGARGGGYRDIVCRNCQQLGHMSRDCMG 230
R + C C + GH+++DC G
Sbjct: 421 ------------------RKMRCLKCGKPGHLAKDCRG 440
>sp|Q1A267|POL_SIVMB Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate MB66)
GN=gag-pol PE=3 SV=4
Length = 1438
Score = 47.4 bits (111), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 45/100 (45%), Gaps = 14/100 (14%)
Query: 104 CHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADCTNDKACNNCRKTGHL----A 159
C CGK GH AR+C AP + C C ++GH +CTN++ N R+T A
Sbjct: 387 CFNCGKEGHIARNCKAP-----RRKGCWKCGQEGHQMRNCTNERQANFFRETLAFQQGKA 441
Query: 160 RDCPNDPICNLCNVSGHVARHCPKSGGLGDRYSGGSGARG 199
R+ P++ + R GG G GGS RG
Sbjct: 442 REFPSEET----RTNSSTNRELRVQGG-GTCPEGGSEERG 476
Score = 45.1 bits (105), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 66 CHNCGLPGHIASECTT--KALCWNCREPGHMAGNCPNE 101
C NCG GHIA C + CW C + GH NC NE
Sbjct: 387 CFNCGKEGHIARNCKAPRRKGCWKCGQEGHQMRNCTNE 424
Score = 43.9 bits (102), Expect = 0.001, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 85 CWNCREPGHMAGNC--PNEGICHTCGKAGHRARDCT 118
C+NC + GH+A NC P C CG+ GH+ R+CT
Sbjct: 387 CFNCGKEGHIARNCKAPRRKGCWKCGQEGHQMRNCT 422
Score = 37.7 bits (86), Expect = 0.085, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 208 GGYRDIVCRNCQQLGHMSRDCMGPLMV-CHNCGGRGHLAYECPSGR 252
G R + C NC + GH++R+C P C CG GH C + R
Sbjct: 380 GPKRIVKCFNCGKEGHIARNCKAPRRKGCWKCGQEGHQMRNCTNER 425
>sp|P12497|POL_HV1N5 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate NY5) GN=gag-pol PE=1 SV=4
Length = 1435
Score = 47.4 bits (111), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 34/78 (43%), Gaps = 25/78 (32%)
Query: 66 CHNCGLPGHIA-------SECTTKAL----------------CWNCREPGHMAGNC--PN 100
C G PGH A S+ T A C+NC + GH+A NC P
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNPATIMIQKGNFRNQRKTVKCFNCGKEGHIAKNCRAPR 409
Query: 101 EGICHTCGKAGHRARDCT 118
+ C CGK GH+ +DCT
Sbjct: 410 KKGCWKCGKEGHQMKDCT 427
Score = 39.7 bits (91), Expect = 0.023, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 34 RRGSRRGYSQSNLCKNCKRPGHFAREC--PNVAICHNCGLPGHIASECTTK 82
++G+ R ++ C NC + GH A+ C P C CG GH +CT +
Sbjct: 379 QKGNFRNQRKTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTER 429
Score = 36.6 bits (83), Expect = 0.16, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 11/83 (13%)
Query: 104 CHTCGKAGHRAR---DCTAPPLPPGDLRLCNNCYKQGHFAADCTNDKACNNCRKTGHLAR 160
C G GH+AR + + P + + ++G+F K C NC K GH+A+
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNPATIMI-----QKGNFRNQRKTVK-CFNCGKEGHIAK 403
Query: 161 DC--PNDPICNLCNVSGHVARHC 181
+C P C C GH + C
Sbjct: 404 NCRAPRKKGCWKCGKEGHQMKDC 426
Score = 34.7 bits (78), Expect = 0.69, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 211 RDIVCRNCQQLGHMSRDCMGPLMV-CHNCGGRGHLAYEC 248
+ + C NC + GH++++C P C CG GH +C
Sbjct: 388 KTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDC 426
>sp|P27980|POL_SIVVG Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM3) GN=gag-pol PE=3 SV=2
Length = 1465
Score = 47.0 bits (110), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 12/70 (17%)
Query: 204 GARGGGYRDIVCRNCQQLGHMSRDCMGPL-MVCHNCGGRGHLAYECP-----------SG 251
G RG + C NC + GHM R C P M C CG GHLA +C G
Sbjct: 393 GQRGRPRPPVKCYNCGKFGHMQRQCPEPRKMRCLKCGKPGHLAKDCRGQVNFFRVWPVDG 452
Query: 252 RFLDRYSRRY 261
++SRRY
Sbjct: 453 SETQKFSRRY 462
Score = 43.5 bits (101), Expect = 0.001, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 34 RRGSRRGYSQSNL-CKNCKRPGHFARECPN--VAICHNCGLPGHIASEC 79
++G +RG + + C NC + GH R+CP C CG PGH+A +C
Sbjct: 390 QQGGQRGRPRPPVKCYNCGKFGHMQRQCPEPRKMRCLKCGKPGHLAKDC 438
Score = 39.3 bits (90), Expect = 0.031, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 8/81 (9%)
Query: 66 CHNCGLPGH---IASECTTKALCWNCREPGHMAGNCPNEGICHTCGKAGHRARDCTAPPL 122
C G P + + +E N + G G C+ CGK GH R C P
Sbjct: 363 CQGVGGPSYKAKVMAEMMQNMQSQNMMQQGGQRGRPRPPVKCYNCGKFGHMQRQCPEPR- 421
Query: 123 PPGDLRLCNNCYKQGHFAADC 143
+R C C K GH A DC
Sbjct: 422 ---KMR-CLKCGKPGHLAKDC 438
Score = 35.4 bits (80), Expect = 0.39, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 149 CNNCRKTGHLARDCPNDP---ICNLCNVSGHVARHC 181
C NC K GH+ R CP +P C C GH+A+ C
Sbjct: 404 CYNCGKFGHMQRQCP-EPRKMRCLKCGKPGHLAKDC 438
Score = 33.9 bits (76), Expect = 1.2, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 29/98 (29%)
Query: 134 YKQGHFAADCTNDKACNNCRKTGHLARDCPNDPI-CNLCNVSGHVARHCPKSGGLGDRYS 192
YK A N ++ N ++ G R P P+ C C GH+ R CP+
Sbjct: 371 YKAKVMAEMMQNMQSQNMMQQGGQRGR--PRPPVKCYNCGKFGHMQRQCPEP-------- 420
Query: 193 GGSGARGSGGSGARGGGYRDIVCRNCQQLGHMSRDCMG 230
R + C C + GH+++DC G
Sbjct: 421 ------------------RKMRCLKCGKPGHLAKDCRG 440
>sp|P05959|POL_HV1RH Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate RF/HAT3) GN=gag-pol PE=1 SV=3
Length = 1436
Score = 47.0 bits (110), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 54 GHFARECPNVAICHNCGLPGHIASECTT--KALCWNCREPGHMAGNCPNEG 102
G+F R+ + C NCG GHIA C K CW C + GH +C NEG
Sbjct: 381 GNF-RDQRKIVKCFNCGKVGHIAKNCRAPRKKGCWKCGKEGHQMKDCTNEG 430
Score = 46.2 bits (108), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 85 CWNCREPGHMAGNC--PNEGICHTCGKAGHRARDCT 118
C+NC + GH+A NC P + C CGK GH+ +DCT
Sbjct: 392 CFNCGKVGHIAKNCRAPRKKGCWKCGKEGHQMKDCT 427
Score = 43.5 bits (101), Expect = 0.001, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 104 CHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADCTND 146
C CGK GH A++C AP + C C K+GH DCTN+
Sbjct: 392 CFNCGKVGHIAKNCRAP-----RKKGCWKCGKEGHQMKDCTNE 429
Score = 39.7 bits (91), Expect = 0.022, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 31/80 (38%), Gaps = 18/80 (22%)
Query: 104 CHTCGKAGHRAR----------DCTAPPLPPGDLR------LCNNCYKQGHFAADC--TN 145
C G H+AR + L G+ R C NC K GH A +C
Sbjct: 350 CQGVGGPSHKARILAEAMSQVTNSATIMLQKGNFRDQRKIVKCFNCGKVGHIAKNCRAPR 409
Query: 146 DKACNNCRKTGHLARDCPND 165
K C C K GH +DC N+
Sbjct: 410 KKGCWKCGKEGHQMKDCTNE 429
Score = 38.1 bits (87), Expect = 0.064, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 208 GGYRD----IVCRNCQQLGHMSRDCMGPLMV-CHNCGGRGHLAYEC 248
G +RD + C NC ++GH++++C P C CG GH +C
Sbjct: 381 GNFRDQRKIVKCFNCGKVGHIAKNCRAPRKKGCWKCGKEGHQMKDC 426
Score = 35.8 bits (81), Expect = 0.35, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 149 CNNCRKTGHLARDC--PNDPICNLCNVSGHVARHCPKSG 185
C NC K GH+A++C P C C GH + C G
Sbjct: 392 CFNCGKVGHIAKNCRAPRKKGCWKCGKEGHQMKDCTNEG 430
>sp|Q8NIW7|BBP_NEUCR Branchpoint-bridging protein OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=bpb-1 PE=3 SV=1
Length = 607
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 54/116 (46%), Gaps = 16/116 (13%)
Query: 118 TAPPLPPGDLRLCNNCYKQ-----GHFAADCTNDKACNNCRKTGHLARDCPN------DP 166
TA +P G L N ++ G D ++AC NC + GH DCP +
Sbjct: 287 TAASIPEGQNELKRNQLRELAALNGTLRDD--ENQACQNCGQIGHRKYDCPEKQNYTANI 344
Query: 167 ICNLCNVSGHVARHCP-KSGGLGDRYSGGSGARGSGGSGARGGGYRDIVCRNCQQL 221
IC +C +GH+AR CP + G R G R +G G+ GGG D V R +QL
Sbjct: 345 ICRVCGNAGHMARDCPDRQRGASWRNDGPGAGRTAGRIGSSGGG--DAVDREYEQL 398
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 214 VCRNCQQLGHMSRDCMGPL-----MVCHNCGGRGHLAYECP 249
C+NC Q+GH DC ++C CG GH+A +CP
Sbjct: 320 ACQNCGQIGHRKYDCPEKQNYTANIICRVCGNAGHMARDCP 360
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Query: 85 CWNCREPGHMAGNCPNEG------ICHTCGKAGHRARDC 117
C NC + GH +CP + IC CG AGH ARDC
Sbjct: 321 CQNCGQIGHRKYDCPEKQNYTANIICRVCGNAGHMARDC 359
>sp|Q02836|POL_SIVG1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.grivet
(isolate AGM gr-1) GN=gag-pol PE=3 SV=2
Length = 1472
Score = 46.6 bits (109), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 199 GSGGSGARGGGYRDIVCRNCQQLGHMSRDCMGPLMV-CHNCGGRGHLAYECPSGR 252
G G RG + C NC + GHM R+C P + C CG GH+A +C +G+
Sbjct: 380 GPQKKGPRG----PLKCFNCGKFGHMQRECKAPRQIKCFKCGKIGHMAKDCKNGQ 430
Score = 42.7 bits (99), Expect = 0.003, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 104 CHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADCTNDKA 148
C CGK GH R+C AP C C K GH A DC N +A
Sbjct: 392 CFNCGKFGHMQRECKAPRQIK-----CFKCGKIGHMAKDCKNGQA 431
Score = 42.0 bits (97), Expect = 0.004, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 85 CWNCREPGHMAGNC--PNEGICHTCGKAGHRARDC 117
C+NC + GHM C P + C CGK GH A+DC
Sbjct: 392 CFNCGKFGHMQRECKAPRQIKCFKCGKIGHMAKDC 426
Score = 40.4 bits (93), Expect = 0.015, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 123 PPGDLRLCNNCYKQGHFAADCTNDK--ACNNCRKTGHLARDCPN 164
P G L+ C NC K GH +C + C C K GH+A+DC N
Sbjct: 386 PRGPLK-CFNCGKFGHMQRECKAPRQIKCFKCGKIGHMAKDCKN 428
Score = 39.3 bits (90), Expect = 0.032, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 31 APYRRGSRRGYSQSNLCKNCKRPGHFAREC--PNVAICHNCGLPGHIASEC 79
P ++G R C NC + GH REC P C CG GH+A +C
Sbjct: 380 GPQKKGPRGPLK----CFNCGKFGHMQRECKAPRQIKCFKCGKIGHMAKDC 426
Score = 38.5 bits (88), Expect = 0.043, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 66 CHNCGLPGHIASECTT--KALCWNCREPGHMAGNCPN 100
C NCG GH+ EC + C+ C + GHMA +C N
Sbjct: 392 CFNCGKFGHMQRECKAPRQIKCFKCGKIGHMAKDCKN 428
>sp|O89940|POL_HV1SE Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype G (isolate SE6165) GN=gag-pol PE=3 SV=3
Length = 1433
Score = 46.6 bits (109), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 85 CWNCREPGHMAGNC--PNEGICHTCGKAGHRARDCT 118
C+NC + GH+A NC P + C CGK GH+ +DCT
Sbjct: 393 CFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCT 428
Score = 43.5 bits (101), Expect = 0.002, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 104 CHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADCTNDKA 148
C CGK GH AR+C AP + C C K+GH DCT +A
Sbjct: 393 CFNCGKEGHLARNCRAP-----RKKGCWKCGKEGHQMKDCTERQA 432
Score = 40.4 bits (93), Expect = 0.013, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 34 RRGSRRGYSQSNLCKNCKRPGHFAREC--PNVAICHNCGLPGHIASECTTK 82
+R + +G ++ C NC + GH AR C P C CG GH +CT +
Sbjct: 380 QRSNFKGPRRTIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTER 430
Score = 39.3 bits (90), Expect = 0.030, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 208 GGYRDIVCRNCQQLGHMSRDCMGPLMV-CHNCGGRGHLAYEC 248
G R I C NC + GH++R+C P C CG GH +C
Sbjct: 386 GPRRTIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDC 427
Score = 38.5 bits (88), Expect = 0.049, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 130 CNNCYKQGHFAADC--TNDKACNNCRKTGHLARDC 162
C NC K+GH A +C K C C K GH +DC
Sbjct: 393 CFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDC 427
Score = 35.8 bits (81), Expect = 0.28, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 149 CNNCRKTGHLARDC--PNDPICNLCNVSGHVARHC 181
C NC K GHLAR+C P C C GH + C
Sbjct: 393 CFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDC 427
>sp|P04588|POL_HV1MA Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype A (isolate MAL) GN=gag-pol PE=1 SV=3
Length = 1440
Score = 46.6 bits (109), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 85 CWNCREPGHMAGNC--PNEGICHTCGKAGHRARDCT 118
C+NC + GH+A NC P + C CGK GH+ +DCT
Sbjct: 398 CFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCT 433
Score = 43.5 bits (101), Expect = 0.002, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 104 CHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADCTNDKA 148
C CGK GH AR+C AP + C C K+GH DCT +A
Sbjct: 398 CFNCGKEGHLARNCRAP-----RKKGCWKCGKEGHQMKDCTERQA 437
Score = 39.7 bits (91), Expect = 0.020, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 34 RRGSRRGYSQSNLCKNCKRPGHFAREC--PNVAICHNCGLPGHIASECTTK 82
+RG+ +G + C NC + GH AR C P C CG GH +CT +
Sbjct: 386 QRGNFKGQKRIK-CFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTER 435
Score = 38.5 bits (88), Expect = 0.046, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 209 GYRDIVCRNCQQLGHMSRDCMGPLMV-CHNCGGRGHLAYEC 248
G + I C NC + GH++R+C P C CG GH +C
Sbjct: 392 GQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDC 432
Score = 38.5 bits (88), Expect = 0.049, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 130 CNNCYKQGHFAADC--TNDKACNNCRKTGHLARDC 162
C NC K+GH A +C K C C K GH +DC
Sbjct: 398 CFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDC 432
Score = 36.2 bits (82), Expect = 0.27, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 104 CHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADCTNDKACNNCRKTGHLARDC- 162
C G H+AR A + ++G+F C NC K GHLAR+C
Sbjct: 356 CQGVGGPSHKAR-VLAEAMSQATNSTAAIMMQRGNFKGQ--KRIKCFNCGKEGHLARNCR 412
Query: 163 -PNDPICNLCNVSGHVARHC 181
P C C GH + C
Sbjct: 413 APRKKGCWKCGKEGHQMKDC 432
>sp|Q75002|POL_HV1ET Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype C (isolate ETH2220) GN=gag-pol PE=3 SV=3
Length = 1439
Score = 46.6 bits (109), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 85 CWNCREPGHMAGNC--PNEGICHTCGKAGHRARDCT 118
C+NC + GH+A NC P + C CGK GH+ +DCT
Sbjct: 389 CFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCT 424
Score = 43.5 bits (101), Expect = 0.001, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 99 PNEGI-CHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADCTNDKACNNCRKT 155
P I C CGK GH AR+C AP + C C K+GH DCT +A N R+T
Sbjct: 383 PKRAIKCFNCGKEGHLARNCRAP-----RKKGCWKCGKEGHQMKDCTERQA-NFFRET 434
Score = 39.3 bits (90), Expect = 0.032, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 34 RRGSRRGYSQSNLCKNCKRPGHFAREC--PNVAICHNCGLPGHIASECTTK 82
++ + +G ++ C NC + GH AR C P C CG GH +CT +
Sbjct: 376 QKSNFKGPKRAIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTER 426
Score = 38.9 bits (89), Expect = 0.038, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 208 GGYRDIVCRNCQQLGHMSRDCMGPLMV-CHNCGGRGHLAYEC 248
G R I C NC + GH++R+C P C CG GH +C
Sbjct: 382 GPKRAIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDC 423
Score = 38.5 bits (88), Expect = 0.049, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 130 CNNCYKQGHFAADC--TNDKACNNCRKTGHLARDC 162
C NC K+GH A +C K C C K GH +DC
Sbjct: 389 CFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDC 423
Score = 35.8 bits (81), Expect = 0.28, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 149 CNNCRKTGHLARDC--PNDPICNLCNVSGHVARHC 181
C NC K GHLAR+C P C C GH + C
Sbjct: 389 CFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDC 423
>sp|Q9WC63|POL_HV1S9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype J (isolate SE9173) GN=gag-pol PE=3 SV=3
Length = 1432
Score = 46.6 bits (109), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 85 CWNCREPGHMAGNC--PNEGICHTCGKAGHRARDCT 118
C+NC + GH+A NC P + C CGK GH+ +DCT
Sbjct: 391 CFNCGKQGHIAKNCRAPRKKGCWKCGKEGHQMKDCT 426
Score = 41.6 bits (96), Expect = 0.005, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 104 CHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADCTNDKA 148
C CGK GH A++C AP + C C K+GH DCT +A
Sbjct: 391 CFNCGKQGHIAKNCRAP-----RKKGCWKCGKEGHQMKDCTERQA 430
Score = 40.4 bits (93), Expect = 0.013, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 34 RRGSRRGYSQSNLCKNCKRPGHFAREC--PNVAICHNCGLPGHIASECTTK 82
+RG+ R + + C NC + GH A+ C P C CG GH +CT +
Sbjct: 378 QRGNFRDHKRIVKCFNCGKQGHIAKNCRAPRKKGCWKCGKEGHQMKDCTER 428
Score = 37.0 bits (84), Expect = 0.15, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 208 GGYRD----IVCRNCQQLGHMSRDCMGPLMV-CHNCGGRGHLAYEC 248
G +RD + C NC + GH++++C P C CG GH +C
Sbjct: 380 GNFRDHKRIVKCFNCGKQGHIAKNCRAPRKKGCWKCGKEGHQMKDC 425
Score = 36.2 bits (82), Expect = 0.24, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 104 CHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADCTNDKACNNCRKTGHLARDC- 162
C G GH+AR A + + N ++G+F D C NC K GH+A++C
Sbjct: 350 CQGVGGPGHKAR-VLAEAM--SQVTNTNIMMQRGNFR-DHKRIVKCFNCGKQGHIAKNCR 405
Query: 163 -PNDPICNLCNVSGHVARHC 181
P C C GH + C
Sbjct: 406 APRKKGCWKCGKEGHQMKDC 425
>sp|Q9WC54|POL_HV1S2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype J (isolate SE9280) GN=gag-pol PE=3 SV=3
Length = 1432
Score = 46.6 bits (109), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 85 CWNCREPGHMAGNC--PNEGICHTCGKAGHRARDCT 118
C+NC + GH+A NC P + C CGK GH+ +DCT
Sbjct: 391 CFNCGKQGHIAKNCRAPRKKGCWKCGKEGHQMKDCT 426
Score = 41.6 bits (96), Expect = 0.005, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 104 CHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADCTNDKA 148
C CGK GH A++C AP + C C K+GH DCT +A
Sbjct: 391 CFNCGKQGHIAKNCRAP-----RKKGCWKCGKEGHQMKDCTERQA 430
Score = 40.4 bits (93), Expect = 0.013, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 34 RRGSRRGYSQSNLCKNCKRPGHFAREC--PNVAICHNCGLPGHIASECTTK 82
+RG+ R + + C NC + GH A+ C P C CG GH +CT +
Sbjct: 378 QRGNFRDHKRIVKCFNCGKQGHIAKNCRAPRKKGCWKCGKEGHQMKDCTER 428
Score = 37.0 bits (84), Expect = 0.15, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 208 GGYRD----IVCRNCQQLGHMSRDCMGPLMV-CHNCGGRGHLAYEC 248
G +RD + C NC + GH++++C P C CG GH +C
Sbjct: 380 GNFRDHKRIVKCFNCGKQGHIAKNCRAPRKKGCWKCGKEGHQMKDC 425
Score = 36.2 bits (82), Expect = 0.24, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 104 CHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADCTNDKACNNCRKTGHLARDC- 162
C G GH+AR A + + N ++G+F D C NC K GH+A++C
Sbjct: 350 CQGVGGPGHKAR-VLAEAM--SQVTNTNIMMQRGNFR-DHKRIVKCFNCGKQGHIAKNCR 405
Query: 163 -PNDPICNLCNVSGHVARHC 181
P C C GH + C
Sbjct: 406 APRKKGCWKCGKEGHQMKDC 425
>sp|P17757|POL_HV2D1 Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype
A (isolate D194) GN=gag-pol PE=3 SV=3
Length = 1462
Score = 46.6 bits (109), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Query: 66 CHNCGLPGHIASECTT--KALCWNCREPGHMAGNCPNEGICHTCGKAGHRARDCTAPPLP 123
C NCG GH A +C + CW C + GH+ NCP G G AP LP
Sbjct: 391 CWNCGKEGHSAKQCRAPRRQGCWKCGKSGHIMANCPERQAGFLDGPTGK-----AAPQLP 445
Query: 124 PG 125
G
Sbjct: 446 RG 447
Score = 41.2 bits (95), Expect = 0.008, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 19/98 (19%)
Query: 130 CNNCYKQGHFAADC--TNDKACNNCRKTGHLARDCPNDPICNLCNVSGHVARHCPK---- 183
C NC K+GH A C + C C K+GH+ +CP L +G A P+
Sbjct: 391 CWNCGKEGHSAKQCRAPRRQGCWKCGKSGHIMANCPERQAGFLDGPTGKAAPQLPRGPSS 450
Query: 184 -------------SGGLGDRYSGGSGARGSGGSGARGG 208
SG +G+ Y+ A + G +GG
Sbjct: 451 SGADTNSTPNRSSSGPVGEIYAAREKAERAEGETIQGG 488
Score = 39.3 bits (90), Expect = 0.030, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 211 RDIVCRNCQQLGHMSRDCMGP-LMVCHNCGGRGHLAYECPSGR--FLD 255
R I C NC + GH ++ C P C CG GH+ CP + FLD
Sbjct: 387 RAIRCWNCGKEGHSAKQCRAPRRQGCWKCGKSGHIMANCPERQAGFLD 434
Score = 37.0 bits (84), Expect = 0.13, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 47 CKNCKRPGHFAREC--PNVAICHNCGLPGHIASECTTK 82
C NC + GH A++C P C CG GHI + C +
Sbjct: 391 CWNCGKEGHSAKQCRAPRRQGCWKCGKSGHIMANCPER 428
>sp|P24107|POL_HV2CA Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype
A (isolate CAM2) GN=gag-pol PE=3 SV=3
Length = 1462
Score = 46.2 bits (108), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 66 CHNCGLPGHIASECTT--KALCWNCREPGHMAGNCPN 100
C NCG GH A +C + CW C +PGH+ NCP+
Sbjct: 391 CWNCGKEGHSARQCRAPRRQGCWKCGKPGHIMTNCPD 427
Score = 42.0 bits (97), Expect = 0.004, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 47 CKNCKRPGHFAREC--PNVAICHNCGLPGHIASEC 79
C NC + GH AR+C P C CG PGHI + C
Sbjct: 391 CWNCGKEGHSARQCRAPRRQGCWKCGKPGHIMTNC 425
Score = 40.0 bits (92), Expect = 0.017, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 85 CWNCREPGHMAGNC--PNEGICHTCGKAGHRARDCTAPPLPPGDLR 128
CWNC + GH A C P C CGK GH +C P G LR
Sbjct: 391 CWNCGKEGHSARQCRAPRRQGCWKCGKPGHIMTNC--PDRQAGFLR 434
Score = 39.7 bits (91), Expect = 0.024, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 211 RDIVCRNCQQLGHMSRDCMGP-LMVCHNCGGRGHLAYECP 249
R I C NC + GH +R C P C CG GH+ CP
Sbjct: 387 RTIKCWNCGKEGHSARQCRAPRRQGCWKCGKPGHIMTNCP 426
Score = 39.3 bits (90), Expect = 0.032, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 13/60 (21%)
Query: 104 CHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADCTNDKACNNCRKTGHLARDCP 163
C CGK GH AR C AP + C C K GH +C + R+ G L RD P
Sbjct: 391 CWNCGKEGHSARQCRAP-----RRQGCWKCGKPGHIMTNCPD-------RQAGFL-RDWP 437
Score = 37.7 bits (86), Expect = 0.075, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 41/116 (35%), Gaps = 27/116 (23%)
Query: 104 CHTCGKAGHRAR-------DCTAPPLPPGDLRLCNNCYKQGHFAADCTNDKACNNCRKTG 156
C G G +AR + PP P AA C NC K G
Sbjct: 352 CQGVGGPGQKARLMAEALKEAMGPPPIP-------------FAAAQQRRTIKCWNCGKEG 398
Query: 157 HLARDC--PNDPICNLCNVSGHVARHCP--KSGGLGDRYSGGSG---ARGSGGSGA 205
H AR C P C C GH+ +CP ++G L D G RG +GA
Sbjct: 399 HSARQCRAPRRQGCWKCGKPGHIMTNCPDRQAGFLRDWPLGKEAPQFPRGPSSTGA 454
>sp|Q9QBY3|POL_HV196 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype K (isolate 96CM-MP535) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 46.2 bits (108), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 85 CWNCREPGHMAGNC--PNEGICHTCGKAGHRARDCT 118
C+NC + GH+A NC P + C CGK GH+ +DCT
Sbjct: 387 CFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCT 422
Score = 43.1 bits (100), Expect = 0.002, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 104 CHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADCTNDKA 148
C CGK GH AR+C AP + C C K+GH DCT +A
Sbjct: 387 CFNCGKEGHIARNCRAP-----RKKGCWKCGKEGHQMKDCTERQA 426
Score = 42.0 bits (97), Expect = 0.005, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 34 RRGSRRGYSQSNLCKNCKRPGHFAREC--PNVAICHNCGLPGHIASECTTK 82
++G+ +G+ + C NC + GH AR C P C CG GH +CT +
Sbjct: 374 QKGNFKGHRKIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTER 424
Score = 39.3 bits (90), Expect = 0.030, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 209 GYRDIV-CRNCQQLGHMSRDCMGPLMV-CHNCGGRGHLAYEC 248
G+R IV C NC + GH++R+C P C CG GH +C
Sbjct: 380 GHRKIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDC 421
Score = 38.1 bits (87), Expect = 0.058, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 130 CNNCYKQGHFAADC--TNDKACNNCRKTGHLARDC 162
C NC K+GH A +C K C C K GH +DC
Sbjct: 387 CFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDC 421
Score = 35.0 bits (79), Expect = 0.55, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 149 CNNCRKTGHLARDC--PNDPICNLCNVSGHVARHC 181
C NC K GH+AR+C P C C GH + C
Sbjct: 387 CFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDC 421
>sp|P33458|GAG_CAEVC Gag polyprotein OS=Caprine arthritis encephalitis virus (strain
Cork) GN=gag PE=3 SV=1
Length = 441
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 27/47 (57%)
Query: 33 YRRGSRRGYSQSNLCKNCKRPGHFARECPNVAICHNCGLPGHIASEC 79
R G +G Q C NC +PGH AR+C ICHNCG GH+ EC
Sbjct: 367 LRPGKGKGNGQPQRCYNCGKPGHQARQCRQGIICHNCGKRGHMQKEC 413
Score = 39.7 bits (91), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 85 CWNCREPGHMAGNCPNEGICHTCGKAGHRARDC 117
C+NC +PGH A C ICH CGK GH ++C
Sbjct: 381 CYNCGKPGHQARQCRQGIICHNCGKRGHMQKEC 413
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 215 CRNCQQLGHMSRDCMGPLMVCHNCGGRGHLAYEC 248
C NC + GH +R C + +CHNCG RGH+ EC
Sbjct: 381 CYNCGKPGHQARQCRQGI-ICHNCGKRGHMQKEC 413
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 66 CHNCGLPGHIASECTTKALCWNCREPGHMAGNC 98
C+NCG PGH A +C +C NC + GHM C
Sbjct: 381 CYNCGKPGHQARQCRQGIICHNCGKRGHMQKEC 413
Score = 32.0 bits (71), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 130 CNNCYKQGHFAADCTNDKACNNCRKTGHLARDC 162
C NC K GH A C C+NC K GH+ ++C
Sbjct: 381 CYNCGKPGHQARQCRQGIICHNCGKRGHMQKEC 413
>sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 OS=Caenorhabditis elegans GN=glh-1
PE=1 SV=3
Length = 763
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 49/127 (38%), Gaps = 47/127 (37%)
Query: 44 SNLCKNCKRPGHFARECP------NVAICHNCGLPGHIASECTTK--------------- 82
+N C NC++PGH + +CP +C+NC PGH + ECT +
Sbjct: 157 NNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERKPREGRTGGFGGGA 216
Query: 83 -------------------------ALCWNCREPGHMAGNCPNEGI-CHTCGKAGHRARD 116
C+NC+ GH + CP C CG+ GHR+ +
Sbjct: 217 GFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNE 276
Query: 117 CTAPPLP 123
C P P
Sbjct: 277 CPNPAKP 283
Score = 34.7 bits (78), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 43/120 (35%), Gaps = 42/120 (35%)
Query: 104 CHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADCTNDK---------------- 147
C C + GHR+ DC P + R+C NC + GH + +CT ++
Sbjct: 160 CFNCQQPGHRSSDC-PEPRKEREPRVCYNCQQPGHTSRECTEERKPREGRTGGFGGGAGF 218
Query: 148 ------------------------ACNNCRKTGHLARDCPNDPI-CNLCNVSGHVARHCP 182
C NC+ GH + +CP P C C GH + CP
Sbjct: 219 GNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNECP 278
Score = 34.3 bits (77), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 215 CRNCQQLGHMSRDCMGPLM-----VCHNCGGRGHLAYECPSGR 252
C NCQQ GH S DC P VC+NC GH + EC R
Sbjct: 160 CFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEER 202
>sp|P04589|POL_HV1EL Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate ELI) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 46.2 bits (108), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 85 CWNCREPGHMAGNC--PNEGICHTCGKAGHRARDCT 118
C+NC + GH+A NC P + C CGK GH+ +DCT
Sbjct: 393 CFNCGKEGHIAKNCRAPRKKGCWRCGKEGHQLKDCT 428
Score = 41.6 bits (96), Expect = 0.006, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 14/90 (15%)
Query: 66 CHNCGLPGHIAS------ECTTKALCWNCREPGHMAGNCPNEGI-CHTCGKAGHRARDCT 118
C G P H A T ++ + G+ G P + I C CGK GH A++C
Sbjct: 350 CQGVGGPSHKARVLAEAMSQATNSVTTAMMQRGNFKG--PRKIIKCFNCGKEGHIAKNCR 407
Query: 119 APPLPPGDLRLCNNCYKQGHFAADCTNDKA 148
AP + C C K+GH DCT +A
Sbjct: 408 AP-----RKKGCWRCGKEGHQLKDCTERQA 432
Score = 39.7 bits (91), Expect = 0.020, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 27 SYRDAPYRRGSRRGYSQSNLCKNCKRPGHFAREC--PNVAICHNCGLPGHIASECTTK 82
S A +RG+ +G + C NC + GH A+ C P C CG GH +CT +
Sbjct: 373 SVTTAMMQRGNFKGPRKIIKCFNCGKEGHIAKNCRAPRKKGCWRCGKEGHQLKDCTER 430
Score = 35.0 bits (79), Expect = 0.50, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 104 CHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADCTNDKACNNCRKTGHLARDC- 162
C G H+AR A + + ++G+F K C NC K GH+A++C
Sbjct: 350 CQGVGGPSHKAR-VLAEAMSQATNSVTTAMMQRGNFKGPRKIIK-CFNCGKEGHIAKNCR 407
Query: 163 -PNDPICNLCNVSGHVARHC 181
P C C GH + C
Sbjct: 408 APRKKGCWRCGKEGHQLKDC 427
Score = 35.0 bits (79), Expect = 0.54, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 209 GYRDIV-CRNCQQLGHMSRDCMGPLMV-CHNCGGRGHLAYEC 248
G R I+ C NC + GH++++C P C CG GH +C
Sbjct: 386 GPRKIIKCFNCGKEGHIAKNCRAPRKKGCWRCGKEGHQLKDC 427
>sp|P04585|POL_HV1H2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate HXB2) GN=gag-pol PE=1 SV=4
Length = 1435
Score = 46.2 bits (108), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 39/93 (41%), Gaps = 21/93 (22%)
Query: 66 CHNCGLPGHIA-------SECTTKALCWNCREPGHMAGNCPNEGI---CHTCGKAGHRAR 115
C G PGH A S+ T A R GN N+ C CGK GH AR
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNSATIMMQR------GNFRNQRKIVKCFNCGKEGHTAR 403
Query: 116 DCTAPPLPPGDLRLCNNCYKQGHFAADCTNDKA 148
+C AP + C C K+GH DCT +A
Sbjct: 404 NCRAP-----RKKGCWKCGKEGHQMKDCTERQA 431
Score = 40.0 bits (92), Expect = 0.017, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 34 RRGSRRGYSQSNLCKNCKRPGHFAREC--PNVAICHNCGLPGHIASECTTK 82
+RG+ R + C NC + GH AR C P C CG GH +CT +
Sbjct: 379 QRGNFRNQRKIVKCFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDCTER 429
Score = 35.4 bits (80), Expect = 0.41, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 211 RDIV-CRNCQQLGHMSRDCMGPLMV-CHNCGGRGHLAYEC 248
R IV C NC + GH +R+C P C CG GH +C
Sbjct: 387 RKIVKCFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDC 426
Score = 34.3 bits (77), Expect = 0.85, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 104 CHTCGKAGHRARDCTAPPLPPGDLRLCNNC---YKQGHFAADCTNDKACNNCRKTGHLAR 160
C G GH+AR L ++ N+ ++G+F K C NC K GH AR
Sbjct: 350 CQGVGGPGHKAR-----VLAEAMSQVTNSATIMMQRGNFRNQRKIVK-CFNCGKEGHTAR 403
Query: 161 DC--PNDPICNLCNVSGHVARHC 181
+C P C C GH + C
Sbjct: 404 NCRAPRKKGCWKCGKEGHQMKDC 426
>sp|Q9IDV9|POL_HV1YB Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group N
(isolate YBF106) GN=gag-pol PE=3 SV=3
Length = 1449
Score = 46.2 bits (108), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/105 (34%), Positives = 43/105 (40%), Gaps = 13/105 (12%)
Query: 104 CHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADCTNDKACNNCRK-TGHLARDC 162
C CGK GH AR+C AP R C C ++GH DC N+ N RK L R+
Sbjct: 394 CFNCGKEGHLARNCKAP-----RRRGCWKCGQEGHQMKDCKNEGXQANFRKGLVSLQRET 448
Query: 163 PNDPICNLCNVSGHVARHCPKSGGLGDRYSGGSGARGSGGSGARG 207
P N H P + L SGG G G +G G
Sbjct: 449 RKLPPDN-----NKERAHSPATRELW--VSGGEEHTGKGDAGEPG 486
Score = 44.7 bits (104), Expect = 7e-04, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 66 CHNCGLPGHIASECTT--KALCWNCREPGHMAGNCPNEG 102
C NCG GH+A C + CW C + GH +C NEG
Sbjct: 394 CFNCGKEGHLARNCKAPRRRGCWKCGQEGHQMKDCKNEG 432
Score = 42.7 bits (99), Expect = 0.003, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 85 CWNCREPGHMAGNC--PNEGICHTCGKAGHRARDC 117
C+NC + GH+A NC P C CG+ GH+ +DC
Sbjct: 394 CFNCGKEGHLARNCKAPRRRGCWKCGQEGHQMKDC 428
Score = 37.0 bits (84), Expect = 0.14, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 208 GGYRDIVCRNCQQLGHMSRDCMGPLMV-CHNCGGRGHLAYEC 248
G + I C NC + GH++R+C P C CG GH +C
Sbjct: 387 GIRKTIKCFNCGKEGHLARNCKAPRRRGCWKCGQEGHQMKDC 428
>sp|P18096|POL_HV2BE Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype
A (isolate BEN) GN=gag-pol PE=3 SV=4
Length = 1550
Score = 46.2 bits (108), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 68 NCGLPGHIASECTT--KALCWNCREPGHMAGNCPN-EGICHTCGKAGHRARDCTAPPLPP 124
NCG GH A +C + CW C +PGH+ NCP + G G A P P
Sbjct: 393 NCGKEGHSARQCRAPRRQGCWKCGKPGHIMANCPERQAGFFRVGPTGKEASQLPRDPSPS 452
Query: 125 G 125
G
Sbjct: 453 G 453
Score = 40.4 bits (93), Expect = 0.013, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 107 CGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADCTNDKA-CNNCRKTGHLARDCPND 165
CGK GH AR C AP + C C K GH A+C +A TG A P D
Sbjct: 394 CGKEGHSARQCRAP-----RRQGCWKCGKPGHIMANCPERQAGFFRVGPTGKEASQLPRD 448
Query: 166 P 166
P
Sbjct: 449 P 449
Score = 39.3 bits (90), Expect = 0.026, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 49 NCKRPGHFAREC--PNVAICHNCGLPGHIASECTTK 82
NC + GH AR+C P C CG PGHI + C +
Sbjct: 393 NCGKEGHSARQCRAPRRQGCWKCGKPGHIMANCPER 428
Score = 35.8 bits (81), Expect = 0.33, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 86 WNCREPGHMAGNC--PNEGICHTCGKAGHRARDC 117
WNC + GH A C P C CGK GH +C
Sbjct: 392 WNCGKEGHSARQCRAPRRQGCWKCGKPGHIMANC 425
Score = 34.3 bits (77), Expect = 0.88, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 217 NCQQLGHMSRDCMGPL-MVCHNCGGRGHLAYECP 249
NC + GH +R C P C CG GH+ CP
Sbjct: 393 NCGKEGHSARQCRAPRRQGCWKCGKPGHIMANCP 426
>sp|O91080|POL_HV1YF Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group N
(isolate YBF30) GN=gag-pol PE=3 SV=3
Length = 1449
Score = 45.8 bits (107), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 85 CWNCREPGHMAGNC--PNEGICHTCGKAGHRARDC 117
C+NC + GH+A NC P G C CG+ GH+ +DC
Sbjct: 395 CFNCGKEGHLARNCKAPRRGGCWKCGQEGHQMKDC 429
Score = 45.4 bits (106), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 66 CHNCGLPGHIASECTT--KALCWNCREPGHMAGNCPNEG 102
C NCG GH+A C + CW C + GH +C NEG
Sbjct: 395 CFNCGKEGHLARNCKAPRRGGCWKCGQEGHQMKDCKNEG 433
Score = 40.4 bits (93), Expect = 0.013, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 104 CHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADCTND 146
C CGK GH AR+C AP C C ++GH DC N+
Sbjct: 395 CFNCGKEGHLARNCKAPRRGG-----CWKCGQEGHQMKDCKNE 432
Score = 37.0 bits (84), Expect = 0.15, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 149 CNNCRKTGHLARDC--PNDPICNLCNVSGHVARHCPKSG 185
C NC K GHLAR+C P C C GH + C G
Sbjct: 395 CFNCGKEGHLARNCKAPRRGGCWKCGQEGHQMKDCKNEG 433
Score = 36.6 bits (83), Expect = 0.20, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 208 GGYRDIVCRNCQQLGHMSRDCMGPLM-VCHNCGGRGHLAYEC 248
G + I C NC + GH++R+C P C CG GH +C
Sbjct: 388 GIRKPIKCFNCGKEGHLARNCKAPRRGGCWKCGQEGHQMKDC 429
>sp|P03366|POL_HV1B1 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BH10) GN=gag-pol PE=1 SV=3
Length = 1447
Score = 45.8 bits (107), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 39/93 (41%), Gaps = 21/93 (22%)
Query: 66 CHNCGLPGHIA-------SECTTKALCWNCREPGHMAGNCPNEGI---CHTCGKAGHRAR 115
C G PGH A S+ T A R GN N+ C CGK GH AR
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNTATIMMQR------GNFRNQRKMVKCFNCGKEGHTAR 403
Query: 116 DCTAPPLPPGDLRLCNNCYKQGHFAADCTNDKA 148
+C AP + C C K+GH DCT +A
Sbjct: 404 NCRAP-----RKKGCWKCGKEGHQMKDCTERQA 431
Score = 40.4 bits (93), Expect = 0.014, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 34 RRGSRRGYSQSNLCKNCKRPGHFAREC--PNVAICHNCGLPGHIASECTTK 82
+RG+ R + C NC + GH AR C P C CG GH +CT +
Sbjct: 379 QRGNFRNQRKMVKCFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDCTER 429
Score = 35.4 bits (80), Expect = 0.43, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 208 GGYRD----IVCRNCQQLGHMSRDCMGPLMV-CHNCGGRGHLAYEC 248
G +R+ + C NC + GH +R+C P C CG GH +C
Sbjct: 381 GNFRNQRKMVKCFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDC 426
Score = 34.7 bits (78), Expect = 0.75, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 104 CHTCGKAGHRARDCTAPPLPPGDLRLCNNC---YKQGHFAADCTNDKACNNCRKTGHLAR 160
C G GH+AR L ++ N ++G+F K C NC K GH AR
Sbjct: 350 CQGVGGPGHKAR-----VLAEAMSQVTNTATIMMQRGNFRNQRKMVK-CFNCGKEGHTAR 403
Query: 161 DC--PNDPICNLCNVSGHVARHC 181
+C P C C GH + C
Sbjct: 404 NCRAPRKKGCWKCGKEGHQMKDC 426
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.139 0.487
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,842,214
Number of Sequences: 539616
Number of extensions: 5205806
Number of successful extensions: 41196
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 427
Number of HSP's that attempted gapping in prelim test: 30919
Number of HSP's gapped (non-prelim): 7540
length of query: 261
length of database: 191,569,459
effective HSP length: 115
effective length of query: 146
effective length of database: 129,513,619
effective search space: 18908988374
effective search space used: 18908988374
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)