BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024888
(261 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224150739|ref|XP_002337003.1| predicted protein [Populus trichocarpa]
gi|222837556|gb|EEE75921.1| predicted protein [Populus trichocarpa]
Length = 330
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 98/271 (36%), Positives = 136/271 (50%), Gaps = 68/271 (25%)
Query: 25 EDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQA 84
E+D YK++LQELAQ+E LP Y T +SGE+H PTFVS VE+ GE+F+GQGAK+KKQA
Sbjct: 77 EEDGFGYKSLLQELAQREGCGLPTYWTDKSGEAHVPTFVSKVEIEGEIFTGQGAKTKKQA 136
Query: 85 EMSAAKVAYMRLKEPNPSQGPALVSPDIQAQ----------------------ADYSSSS 122
EMSAAK+AY L++ SQ P +S Q Q +S S+
Sbjct: 137 EMSAAKIAYTALQQRYSSQSPGFLSTSSQFQEAPRSSPLSPARQSQEAVQSETPQFSVSN 196
Query: 123 LQSNVTADLHHNIQTAGRLVFNPNSMPKV-----QAEEIRELTTV---NTEVA--GYD-- 170
L++ +TA L NIQ PK+ QAEE R + V N +A G D
Sbjct: 197 LRAGLTAYLQQNIQ------------PKLPVSNEQAEEYRANSVVSNHNPSIASPGQDSC 244
Query: 171 ---LSQFPQPEFSSSS----DLSASSGVEKGMPSSSLPLECTVDPRVDPIAQSVRADGRT 223
S P P + SS DL++SS +PS S P ++ + + +R
Sbjct: 245 SAMASITPSPAAAISSSPKHDLTSSS-----LPSDS-PTNLATSSSIEFMVRGIR----- 293
Query: 224 CKIIRVRPNRPNMKFPEGSSVLH-RDNQWVA 253
+ + P+ M +P GS+VL D++W A
Sbjct: 294 ---VLMHPSGTKMTYPAGSTVLPISDDKWAA 321
Score = 43.5 bits (101), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQ 76
L+KN LQ AQK + LPVY+ ++ G HA F V V G+ + Q
Sbjct: 4 LFKNQLQTYAQKRNFTLPVYSCERVGPPHASRFKCKVTVNGQTYESQ 50
>gi|296085908|emb|CBI31232.3| unnamed protein product [Vitis vinifera]
Length = 494
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/126 (52%), Positives = 82/126 (65%), Gaps = 2/126 (1%)
Query: 24 QEDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQ 83
QEDD +YKN+LQE+A+KE Y LPVY+T++SG SH PTF+STVE+ GE F GQ AK+KK
Sbjct: 231 QEDDYGVYKNLLQEMARKEGYQLPVYSTEKSGVSHMPTFLSTVEIEGETFVGQKAKTKKL 290
Query: 84 AEMSAAKVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNV--TADLHHNIQTAGRL 141
AEM+AAK AY LKE + +SP Q SSS S TADL NI + L
Sbjct: 291 AEMNAAKAAYTHLKERRSNLNHKSLSPSGQELRGVESSSFNSESSGTADLQQNIISKLTL 350
Query: 142 VFNPNS 147
V P++
Sbjct: 351 VLKPSA 356
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFS-GQGAKSKKQAEMSA 88
+ K LQEL ++ + P Y+T++ G H PTF++TV VGG FS A+S K+A+ +A
Sbjct: 1 MNKTRLQELCHRKRWNPPEYSTRKDGPPHNPTFIATVSVGGLSFSTDHPARSSKEAQSNA 60
Query: 89 AKVAYMRLKEPNP 101
A +A L +P P
Sbjct: 61 AGLAIQYLTDPKP 73
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
LYK LQ AQK LP+Y+ + G SH F S V + + + S + K AE +A
Sbjct: 158 LYKTQLQTYAQKRNLPLPMYSFESIGPSHNCRFKSKVTIEEQTYESPDFFPTLKDAEHAA 217
Query: 89 AKVAYMRL 96
AK+A M L
Sbjct: 218 AKLALMSL 225
>gi|359481028|ref|XP_002270719.2| PREDICTED: uncharacterized protein LOC100243264 [Vitis vinifera]
Length = 495
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/124 (51%), Positives = 80/124 (64%), Gaps = 2/124 (1%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
DD +YKN+LQE+A+KE Y LPVY+T++SG SH PTF+STVE+ GE F GQ AK+KK AE
Sbjct: 234 DDYGVYKNLLQEMARKEGYQLPVYSTEKSGVSHMPTFLSTVEIEGETFVGQKAKTKKLAE 293
Query: 86 MSAAKVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNV--TADLHHNIQTAGRLVF 143
M+AAK AY LKE + +SP Q SSS S TADL NI + LV
Sbjct: 294 MNAAKAAYTHLKERRSNLNHKSLSPSGQELRGVESSSFNSESSGTADLQQNIISKLTLVL 353
Query: 144 NPNS 147
P++
Sbjct: 354 KPSA 357
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 32 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFS-GQGAKSKKQAEMSAAK 90
K LQEL ++ + P Y+T++ G H PTF++TV VGG FS A+S K+A+ +AA
Sbjct: 12 KTRLQELCHRKRWNPPEYSTRKDGPPHNPTFIATVSVGGLSFSTDHPARSSKEAQSNAAG 71
Query: 91 VAYMRLKEPNP 101
+A L +P P
Sbjct: 72 LAIQYLTDPKP 82
>gi|224125924|ref|XP_002319709.1| predicted protein [Populus trichocarpa]
gi|222858085|gb|EEE95632.1| predicted protein [Populus trichocarpa]
Length = 240
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/83 (59%), Positives = 65/83 (78%), Gaps = 4/83 (4%)
Query: 16 QLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSG 75
++S +F ++ YKN+LQELAQ+E LP Y+T +SGE+H PTF+STVE+ GE+F+G
Sbjct: 161 EVSFLFMDESG----YKNLLQELAQREGCGLPTYSTNKSGEAHVPTFISTVEIEGEIFTG 216
Query: 76 QGAKSKKQAEMSAAKVAYMRLKE 98
QGAK+KKQAEMSAAK AY LK+
Sbjct: 217 QGAKTKKQAEMSAAKTAYTALKQ 239
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YK+ LQEL Q+ A+ LP Y + + G++H P F++TV V F S + + K+A+ A
Sbjct: 1 MYKSKLQELCQQRAWELPTYESSRQGQAHNPRFLATVTVNNISFHSPSPSNTSKKAQNDA 60
Query: 89 AKVAY 93
AK+AY
Sbjct: 61 AKLAY 65
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF 73
D L+K+ LQ AQK +ALPVY+ ++ G H+ F V V G+ F
Sbjct: 83 DMQRLFKSQLQTYAQKRNFALPVYSCERVGPPHSSRFKCKVTVNGQTF 130
>gi|255569490|ref|XP_002525712.1| double-stranded RNA binding protein, putative [Ricinus communis]
gi|223535012|gb|EEF36695.1| double-stranded RNA binding protein, putative [Ricinus communis]
Length = 280
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 124/292 (42%), Gaps = 87/292 (29%)
Query: 27 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 86
D YKN+LQELAQKE Y LP Y+T GESH PTF STVEV GE F+GQ ++KKQAE
Sbjct: 3 DEFAYKNLLQELAQKEGYGLPSYSTVTFGESHKPTFASTVEVKGEFFTGQQTRTKKQAEF 62
Query: 87 SAAKVAYMRLKEPNPSQGPAL--------------------------------------- 107
+AAKVAY LK+ N Q +
Sbjct: 63 NAAKVAYKALKQRNSKQSSTVLLPSNTSHQPVGSCSGNSSQSLMASSLSNLKQRPITSLG 122
Query: 108 --------VSPDIQAQ--ADYSSSSLQSNVTADLHHNIQ--TAGRLVFNPNSMPKVQAEE 155
+SP Q Q ++SSS +S++ A L N+Q GR QAEE
Sbjct: 123 NSRQSAQSLSPPHQKQKVVQFTSSSSRSDLAAYLKQNVQPRMPGR---------DKQAEE 173
Query: 156 IRELTTVNTEVAGYDLSQFPQPEFSSSSDLSASSGVEKGMPSSSLPLECTVDPRVDPIAQ 215
RE+ V++ P +S++ +S + P S ++ P P+
Sbjct: 174 DREIAEVSSA-----------PPTTSANVISCDPHIASAGPESCCKKNISLSP--CPLIF 220
Query: 216 SVRADGRTCKI-------------IRVRPNRPNMKFPEGSSVL-HRDNQWVA 253
S+ + I + V P NM +P GS+VL D+ WVA
Sbjct: 221 SLPDSAVSSSIEHPTGKNMLLHNKVTVHPRGTNMTYPPGSTVLPMSDDNWVA 272
>gi|147856819|emb|CAN79168.1| hypothetical protein VITISV_028064 [Vitis vinifera]
Length = 292
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 60/74 (81%)
Query: 25 EDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQA 84
+DD +YKN+LQE+A+KE Y LPVY+T++SG SH PTF+STVE+ GE F GQ AK+KK A
Sbjct: 217 KDDYGVYKNLLQEMARKEGYQLPVYSTEKSGVSHMPTFLSTVEIEGETFVGQKAKTKKLA 276
Query: 85 EMSAAKVAYMRLKE 98
EM+AAK AY LKE
Sbjct: 277 EMNAAKAAYTHLKE 290
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 32 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFS-GQGAKSKKQAEMSAAK 90
K LQEL ++ + P Y+T++ G H PTF +TV VGG FS A+S K+A+ +AA
Sbjct: 12 KTRLQELCHRKRWNPPEYSTRKDGPPHNPTFXATVSVGGLSFSTDHPARSSKEAQSNAAG 71
Query: 91 VAYMRLKEPNP 101
+A L +P P
Sbjct: 72 LAIQYLTDPKP 82
>gi|238480134|ref|NP_001154686.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
gi|197267565|dbj|BAG69145.1| dsRNA-binding protein [Arabidopsis thaliana]
gi|332646874|gb|AEE80395.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
Length = 329
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 129/251 (51%), Gaps = 32/251 (12%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
V YKN+LQE+AQKE+ LP Y T SG SHAPTF STVE G+VFSG+ AK+KK AEMSA
Sbjct: 81 VAYKNLLQEIAQKESSLLPFYATATSGPSHAPTFTSTVEFAGKVFSGEEAKTKKLAEMSA 140
Query: 89 AKVAYMRLKEPNPSQ--GPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGRLVFNPN 146
AKVA+M +K N +Q P L S + Q D +S+ S ++H Q + ++V P+
Sbjct: 141 AKVAFMSIKNGNSNQTGSPTLPS---ERQEDVNSNVKSS--PQEIHS--QPSSKVVMTPD 193
Query: 147 SMP---KVQAEEIRELTTVNTEVAGYDLSQFPQPEFS------SSSDLSASSGVEKGMPS 197
+ KV +E +L A +PE S+ A++G+++ + +
Sbjct: 194 TPSKGIKVNEDEFPDLHDAPASNAKEINVALNEPENPTNDGTLSALTTDAANGIKRNIAA 253
Query: 198 SS--LPLE----------CTVD--PRVDPIAQSVRADGRTCKIIRVRPNRPNMKFPEGSS 243
S +P C VD + I + T + + RP P + P+ +
Sbjct: 254 CSSWMPQNPTNDGSETSSCVVDESEKKKLIMGTGHLSIPTGQHVVCRPWNPEITLPQDAE 313
Query: 244 VLHRDNQWVAW 254
+L RD++++A+
Sbjct: 314 MLFRDDKFIAY 324
Score = 43.9 bits (102), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YK LQ A + LPVY ++ G HAP F V G+ F S + + K AE +A
Sbjct: 4 VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63
Query: 89 AKVAYMRLKEPNP 101
AK+A L +P
Sbjct: 64 AKIAVASLTPQSP 76
>gi|7362760|emb|CAB83130.1| putative protein [Arabidopsis thaliana]
Length = 345
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 88/277 (31%), Positives = 136/277 (49%), Gaps = 58/277 (20%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
V YKN+LQE+AQKE+ LP Y T SG SHAPTF STVE G+VFSG+ AK+KK AEMSA
Sbjct: 71 VAYKNLLQEIAQKESSLLPFYATATSGPSHAPTFTSTVEFAGKVFSGEEAKTKKLAEMSA 130
Query: 89 AKVAYMRLKEPNPSQ--GPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGRLVFNPN 146
AKVA+M +K N +Q P L S + Q D +S+ S ++H Q + ++V P+
Sbjct: 131 AKVAFMSIKNGNSNQTGSPTLPS---ERQEDVNSNVKSS--PQEIHS--QPSSKVVMTPD 183
Query: 147 SMP---KVQAEEIRELTTV---NTEVAGYDLSQFPQPEFSSSSDLSASSGVEKGMPSSSL 200
+ KV +E +L N + L++ P + + G++ + SSSL
Sbjct: 184 TPSKGIKVNEDEFPDLHDAPASNAKEINVALNEPENPTNDGTLSALTTDGMKMNIASSSL 243
Query: 201 PLE------CTVD-PRVDPIAQSVRA-----------DG---RTCKI------------- 226
P+ T++ P + I +++ A DG +C +
Sbjct: 244 PIPHNPTNVITLNAPAANGIKRNIAACSSWMPQNPTNDGSETSSCVVDESEKKKLIMGTG 303
Query: 227 ---------IRVRPNRPNMKFPEGSSVLHRDNQWVAW 254
+ RP P + P+ + +L RD++++A+
Sbjct: 304 HLSIPTGQHVVCRPWNPEITLPQDAEMLFRDDKFIAY 340
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YK LQ A + LPVY ++ G HAP F V G+ F S + + K AE +A
Sbjct: 4 VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63
Query: 89 AKVA 92
AK+A
Sbjct: 64 AKIA 67
>gi|22331912|ref|NP_191839.2| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
gi|42572769|ref|NP_974480.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
gi|75244610|sp|Q8H1D4.1|DRB4_ARATH RecName: Full=Double-stranded RNA-binding protein 4; AltName:
Full=dsRNA-binding protein 4; Short=AtDRB4
gi|23297784|gb|AAN13025.1| unknown protein [Arabidopsis thaliana]
gi|332646872|gb|AEE80393.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
gi|332646873|gb|AEE80394.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
Length = 355
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 137/281 (48%), Gaps = 58/281 (20%)
Query: 25 EDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQA 84
E V YKN+LQE+AQKE+ LP Y T SG SHAPTF STVE G+VFSG+ AK+KK A
Sbjct: 77 EGIDVAYKNLLQEIAQKESSLLPFYATATSGPSHAPTFTSTVEFAGKVFSGEEAKTKKLA 136
Query: 85 EMSAAKVAYMRLKEPNPSQ--GPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGRLV 142
EMSAAKVA+M +K N +Q P L S + Q D +S+ S ++H Q + ++V
Sbjct: 137 EMSAAKVAFMSIKNGNSNQTGSPTLPS---ERQEDVNSNVKSS--PQEIHS--QPSSKVV 189
Query: 143 FNPNSMP---KVQAEEIRELTTV---NTEVAGYDLSQFPQPEFSSSSDLSASSGVEKGMP 196
P++ KV +E +L N + L++ P + + G++ +
Sbjct: 190 MTPDTPSKGIKVNEDEFPDLHDAPASNAKEINVALNEPENPTNDGTLSALTTDGMKMNIA 249
Query: 197 SSSLPLE------CTVD-PRVDPIAQSVRA-----------DG---RTCKI--------- 226
SSSLP+ T++ P + I +++ A DG +C +
Sbjct: 250 SSSLPIPHNPTNVITLNAPAANGIKRNIAACSSWMPQNPTNDGSETSSCVVDESEKKKLI 309
Query: 227 -------------IRVRPNRPNMKFPEGSSVLHRDNQWVAW 254
+ RP P + P+ + +L RD++++A+
Sbjct: 310 MGTGHLSIPTGQHVVCRPWNPEITLPQDAEMLFRDDKFIAY 350
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YK LQ A + LPVY ++ G HAP F V G+ F S + + K AE +A
Sbjct: 4 VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63
Query: 89 AKVAYMRLKEPNP 101
AK+A L +P
Sbjct: 64 AKIAVASLTPQSP 76
>gi|18389232|gb|AAL67059.1| unknown protein [Arabidopsis thaliana]
Length = 355
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 137/281 (48%), Gaps = 58/281 (20%)
Query: 25 EDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQA 84
E V YKN+LQE+AQKE+ LP Y T SG SHAPTF STVE G+VFSG+ AK+KK A
Sbjct: 77 EGIDVAYKNLLQEIAQKESSLLPFYATATSGPSHAPTFTSTVEFAGKVFSGEEAKTKKLA 136
Query: 85 EMSAAKVAYMRLKEPNPSQ--GPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGRLV 142
EMSAAKVA+M +K N +Q P L S + Q D +S+ S ++H Q + ++V
Sbjct: 137 EMSAAKVAFMSIKNGNSNQTGSPTLPS---ERQEDVNSNVKSS--PQEIHS--QPSSKVV 189
Query: 143 FNPNSMP---KVQAEEIRELTTV---NTEVAGYDLSQFPQPEFSSSSDLSASSGVEKGMP 196
P++ KV +E +L N + L++ P + + G++ +
Sbjct: 190 VTPDTPSKGIKVNEDEFPDLHDAPASNAKEINVALNEPENPTNDGTLSALTTDGMKMNIA 249
Query: 197 SSSLPLE------CTVD-PRVDPIAQSVRA-----------DG---RTCKI--------- 226
SSSLP+ T++ P + I +++ A DG +C +
Sbjct: 250 SSSLPIPHNPTNVITLNAPAANGIKRNIAACSSWMPQNPTNDGSETSSCVVDESEKKKLI 309
Query: 227 -------------IRVRPNRPNMKFPEGSSVLHRDNQWVAW 254
+ RP P + P+ + +L RD++++A+
Sbjct: 310 MGTGHLSIPTGQHVVCRPWNPEITLPQDAEMLFRDDKFIAY 350
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YK LQ A + LPVY ++ G HAP F V G+ F S + + K AE +A
Sbjct: 4 VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63
Query: 89 AKVAYMRLKEPNP 101
AK+A L +P
Sbjct: 64 AKIAVASLTPQSP 76
>gi|449446736|ref|XP_004141127.1| PREDICTED: uncharacterized protein LOC101222879 [Cucumis sativus]
Length = 446
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/76 (65%), Positives = 59/76 (77%), Gaps = 1/76 (1%)
Query: 24 QED-DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKK 82
QED DS LYKN+LQE+AQK LP Y+T QSGE H P FVSTV+VG E F G+ +++KK
Sbjct: 276 QEDSDSGLYKNLLQEMAQKGGLGLPAYSTSQSGEVHVPVFVSTVKVGEENFEGKPSRTKK 335
Query: 83 QAEMSAAKVAYMRLKE 98
QAEMSAAKVAY +KE
Sbjct: 336 QAEMSAAKVAYFTIKE 351
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
++K LQEL +++Y LP Y+ + G+ H P F +TV V G+ F S +KS KQA+ A
Sbjct: 1 MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDA 60
Query: 89 AKVAYMRLKEPNPSQGPALVSP 110
AK+A+ P+ Q P + P
Sbjct: 61 AKLAFDFFSLPSLPQPPEQLCP 82
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 106/259 (40%), Gaps = 55/259 (21%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
LYKN LQ +QK LP+Y ++ G HA F VE+ G+ + S + + K AE +
Sbjct: 203 LYKNKLQNFSQKRGLTLPMYTCERDGPPHASRFRCKVEIDGKTYESLEFHGTLKDAENAV 262
Query: 89 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNVTADL---------HHNIQTAG 139
AKVA M L + AQ D S S L N+ ++ ++ +G
Sbjct: 263 AKVALMSLCQDG-------------AQED-SDSGLYKNLLQEMAQKGGLGLPAYSTSQSG 308
Query: 140 RL---VFNPNSMPKVQAEEIR---ELTTVNTEVAGYDLSQFPQPEFSSSSDLSASSGVEK 193
+ VF S KV E T E++ ++ F + + S S K
Sbjct: 309 EVHVPVF--VSTVKVGEENFEGKPSRTKKQAEMSAAKVAYF------TIKEGSQSISTRK 360
Query: 194 GMPSSSLPLECTVDPRVDP--IAQSVRADGRTCKIIR--------------VRPNRPNMK 237
PS L LE D +AQ ++ +I+ V P +PNM
Sbjct: 361 RAPSCDLALEIPRDIATSSHNVAQPGQSKDYVSRIVSRLEAGKSSSSKRIFVCPRQPNMT 420
Query: 238 FPEGSSVLH-RDNQWVAWT 255
P+ SSVL D+QWVA++
Sbjct: 421 IPKESSVLPISDDQWVAFS 439
>gi|449527097|ref|XP_004170549.1| PREDICTED: double-stranded RNA-binding protein 4-like [Cucumis
sativus]
Length = 247
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/76 (65%), Positives = 59/76 (77%), Gaps = 1/76 (1%)
Query: 24 QED-DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKK 82
QED DS LYKN+LQE+AQK LP Y+T QSGE H P FVSTV+VG E F G+ +++KK
Sbjct: 77 QEDSDSGLYKNLLQEMAQKGGLGLPAYSTSQSGEVHVPVFVSTVKVGEENFEGKPSRTKK 136
Query: 83 QAEMSAAKVAYMRLKE 98
QAEMSAAKVAY +KE
Sbjct: 137 QAEMSAAKVAYFTIKE 152
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 104/257 (40%), Gaps = 51/257 (19%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
LYKN LQ +QK LP+Y ++ G HA F VE+ G+ + S + + K AE +
Sbjct: 4 LYKNKLQNFSQKRGLTLPMYTCERDGPPHASRFRCKVEIDGKTYESLEFHGTLKDAENAV 63
Query: 89 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGRLVFNPNSM 148
AKVA M L + AQ D S S L N+ L Q G +
Sbjct: 64 AKVALMSLCQDG-------------AQED-SDSGLYKNL---LQEMAQKGG---LGLPAY 103
Query: 149 PKVQAEEIRELTTVNT-EVAGYDLSQFP-----QPEFSSS-------SDLSASSGVEKGM 195
Q+ E+ V+T +V + P Q E S++ + S S K
Sbjct: 104 STSQSGEVHVPVFVSTVKVGEENFEGKPSRTKKQAEMSAAKVAYFTIKEGSQSISTRKRA 163
Query: 196 PSSSLPLECTVD---------------PRVDPIAQSVRA-DGRTCKIIRVRPNRPNMKFP 239
PS L LE D V I + A + K I V P +PNM P
Sbjct: 164 PSCDLALEVPRDIATSSHNVAQPGQSKDYVSRIVSRLEAGKSSSSKRIFVCPRQPNMTIP 223
Query: 240 EGSSVL-HRDNQWVAWT 255
+ SSVL D+QWVA++
Sbjct: 224 KESSVLPISDDQWVAFS 240
>gi|224146035|ref|XP_002325855.1| predicted protein [Populus trichocarpa]
gi|222862730|gb|EEF00237.1| predicted protein [Populus trichocarpa]
Length = 281
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 61/77 (79%)
Query: 17 LSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQ 76
+S++ E+D YKN+LQ++AQ+E LP Y T++SGE+HAPTF+STVE+ G F+G+
Sbjct: 200 MSLLPNGVEEDESGYKNLLQDMAQREGCGLPTYFTEKSGEAHAPTFISTVEIDGVNFTGK 259
Query: 77 GAKSKKQAEMSAAKVAY 93
A++KKQAEMSAAK+AY
Sbjct: 260 EARNKKQAEMSAAKIAY 276
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEV-FSGQGAKSKKQAEMSA 88
+YK+ LQ+L+Q+ + +P Y + G+ H+P F +TV V + + + S K+A+ +A
Sbjct: 1 MYKSKLQQLSQQRGWEIPKYEVTKEGQEHSPHFYATVTVDATLFSTPFPSSSSKKAQNAA 60
Query: 89 AKVAY 93
AK+A+
Sbjct: 61 AKLAH 65
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF 73
L+KN LQ AQK + PVY+ ++ G HA F V V G+ +
Sbjct: 135 LFKNQLQTYAQKRNFTRPVYSCERVGPPHAIRFKCKVTVNGQTY 178
>gi|297821192|ref|XP_002878479.1| double-stranded RNA-binding domain (dsrbd)-containing protein 4
[Arabidopsis lyrata subsp. lyrata]
gi|297324317|gb|EFH54738.1| double-stranded RNA-binding domain (dsrbd)-containing protein 4
[Arabidopsis lyrata subsp. lyrata]
Length = 343
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 76/126 (60%), Gaps = 9/126 (7%)
Query: 37 ELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
++AQKE LPVY T SG SH+PTF+STVE G+VF+G AK+KK AEMSAAK+A+M +
Sbjct: 79 KIAQKENSMLPVYATATSGPSHSPTFISTVEFAGKVFTGDEAKTKKLAEMSAAKIAFMSI 138
Query: 97 KEPNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGRLVFNPNS---MPKVQA 153
K N +Q SP + + ++S SNV + L ++V P++ + KV
Sbjct: 139 KNGNSNQ---TSSPSLSCERQEAAS---SNVKSSLQEIHSQPSKVVMTPDAPSKLMKVSE 192
Query: 154 EEIREL 159
+E +L
Sbjct: 193 DEFPDL 198
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YK LQ A K LPVY ++ G HAP F V G+ F S + + K AE +A
Sbjct: 4 VYKGQLQAYALKHNLELPVYANEREGPPHAPRFRCKVTFCGQTFQSLEFFPTLKSAEHAA 63
Query: 89 AKVAYMRLKEPNP 101
AK+A L +P
Sbjct: 64 AKIALASLTPQSP 76
>gi|224104957|ref|XP_002313634.1| predicted protein [Populus trichocarpa]
gi|222850042|gb|EEE87589.1| predicted protein [Populus trichocarpa]
Length = 484
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 67/120 (55%), Gaps = 7/120 (5%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
DDS YKN LQELAQ+E ++PVY +SG H PTF S VE+ GE F G+ KSKK+AE
Sbjct: 196 DDSGFYKNALQELAQREDLSMPVYKIIKSGALHMPTFFSYVEIEGEKFYGKAGKSKKEAE 255
Query: 86 MSAAKVAYMRLKE----PNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGRL 141
+ +A+ AY L E N P SPD + S+ L +L +++ G+L
Sbjct: 256 LKSARAAYTVLMERALNRNAESDPPNFSPD---ETLNSTPGLDMTTAVNLQQHLKQNGQL 312
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 32 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSAAK 90
K LQE+ K + LP Y+ + G H P F ++V V G F S KS K A AAK
Sbjct: 3 KTKLQEVCHKRQWGLPKYSAMKDGPDHTPCFKASVYVNGISFHSSASCKSSKDAHNDAAK 62
Query: 91 VAYMRLKEPNP 101
+A++ P P
Sbjct: 63 MAFLHFTSPPP 73
>gi|414880296|tpg|DAA57427.1| TPA: hypothetical protein ZEAMMB73_801819 [Zea mays]
Length = 459
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 122/282 (43%), Gaps = 63/282 (22%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 87
SV YKN+LQEL QKE + LP+YNT +++ FVSTVE+ G F G+ +KKQAEM+
Sbjct: 175 SVNYKNLLQELVQKEGFPLPIYNTASDVSNYSAAFVSTVEIHGVTFHGKPGNTKKQAEMN 234
Query: 88 AAKVAYMRLKEPNPSQGPA------------------------------LVSPDIQAQAD 117
AAK A+ K N G + L P + +A
Sbjct: 235 AAKSAFEHFKNINHDAGSSGSANPLPVAATKQSVDGNTLRAKLEVNKSHLAEPSTEVEAI 294
Query: 118 YSSSSLQS------NVTADLHHNIQTAGRLVFNPNSMP--------KVQ----AEEIREL 159
YSS+ + ++ ++ + +L SM KV AE I E
Sbjct: 295 YSSTEVDKLPLPGPSMDIEVMDSTLEVDKLPLPERSMDVKVVNSSLKVDKLHFAEPITEA 354
Query: 160 TTVNTEVAGYDLSQFPQPEFSSSSDLSASSGVEKGMPSSSLPLECTVDPRVDPIAQS--- 216
+++ + D P+P SSS L + V S P+ T+ P + + +
Sbjct: 355 EVIHSSLQ-VDEPLIPKPGMSSS--LENTPAVN----GHSAPISPTITPTLISVPTATMP 407
Query: 217 VRADGRTCKI----IRVRPNRPNMKFPEGSSVLH-RDNQWVA 253
V D C + I+V P +M PEG++VL DNQWVA
Sbjct: 408 VSNDRCGCYMSTNRIQVYPRHTDMVIPEGAAVLPISDNQWVA 449
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSG--QGAKSKKQAEMS 87
+YK+ LQEL QK +A P+Y + G +HAP F +TV V GE FS +G KS K+A
Sbjct: 1 MYKSRLQELCQKRRWAPPLYEPTREGPAHAPLFRATVVVNGERFSSRDEGEKSLKEAYNL 60
Query: 88 AAKVAYMRL 96
AA A+ L
Sbjct: 61 AAMAAFDNL 69
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSAA 89
YK+ LQ AQK LP Y G HAP F S V + G+ F S + + K+AE AA
Sbjct: 95 YKSQLQIYAQKRGKLLPSYRPIHGGSLHAPLFKSEVTIDGQTFESPEYCHTMKEAETVAA 154
Query: 90 KVAYMRL-KEPNPSQ 103
KVA M L +E NP+Q
Sbjct: 155 KVALMSLPQEANPTQ 169
>gi|414880297|tpg|DAA57428.1| TPA: hypothetical protein ZEAMMB73_801819 [Zea mays]
Length = 472
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 122/282 (43%), Gaps = 63/282 (22%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 87
SV YKN+LQEL QKE + LP+YNT +++ FVSTVE+ G F G+ +KKQAEM+
Sbjct: 175 SVNYKNLLQELVQKEGFPLPIYNTASDVSNYSAAFVSTVEIHGVTFHGKPGNTKKQAEMN 234
Query: 88 AAKVAYMRLKEPNPSQGPA------------------------------LVSPDIQAQAD 117
AAK A+ K N G + L P + +A
Sbjct: 235 AAKSAFEHFKNINHDAGSSGSANPLPVAATKQSVDGNTLRAKLEVNKSHLAEPSTEVEAI 294
Query: 118 YSSSSLQS------NVTADLHHNIQTAGRLVFNPNSMP--------KVQ----AEEIREL 159
YSS+ + ++ ++ + +L SM KV AE I E
Sbjct: 295 YSSTEVDKLPLPGPSMDIEVMDSTLEVDKLPLPERSMDVKVVNSSLKVDKLHFAEPITEA 354
Query: 160 TTVNTEVAGYDLSQFPQPEFSSSSDLSASSGVEKGMPSSSLPLECTVDPRVDPIAQS--- 216
+++ + D P+P SSS L + V S P+ T+ P + + +
Sbjct: 355 EVIHSSLQ-VDEPLIPKPGMSSS--LENTPAVN----GHSAPISPTITPTLISVPTATMP 407
Query: 217 VRADGRTCKI----IRVRPNRPNMKFPEGSSVLH-RDNQWVA 253
V D C + I+V P +M PEG++VL DNQWVA
Sbjct: 408 VSNDRCGCYMSTNRIQVYPRHTDMVIPEGAAVLPISDNQWVA 449
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSG--QGAKSKKQAEMS 87
+YK+ LQEL QK +A P+Y + G +HAP F +TV V GE FS +G KS K+A
Sbjct: 1 MYKSRLQELCQKRRWAPPLYEPTREGPAHAPLFRATVVVNGERFSSRDEGEKSLKEAYNL 60
Query: 88 AAKVAYMRL 96
AA A+ L
Sbjct: 61 AAMAAFDNL 69
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSAA 89
YK+ LQ AQK LP Y G HAP F S V + G+ F S + + K+AE AA
Sbjct: 95 YKSQLQIYAQKRGKLLPSYRPIHGGSLHAPLFKSEVTIDGQTFESPEYCHTMKEAETVAA 154
Query: 90 KVAYMRL-KEPNPSQ 103
KVA M L +E NP+Q
Sbjct: 155 KVALMSLPQEANPTQ 169
>gi|293336145|ref|NP_001169453.1| uncharacterized protein LOC100383324 [Zea mays]
gi|224029475|gb|ACN33813.1| unknown [Zea mays]
Length = 459
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 122/282 (43%), Gaps = 63/282 (22%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 87
SV YKN+LQEL QKE + LP+YNT +++ FVSTVE+ G F G+ +KKQAEM+
Sbjct: 175 SVNYKNLLQELVQKEGFPLPIYNTASDVSNYSAAFVSTVEIRGVTFHGKPGNTKKQAEMN 234
Query: 88 AAKVAYMRLKEPNPSQGPA------------------------------LVSPDIQAQAD 117
AAK A+ K N G + L P + +A
Sbjct: 235 AAKSAFEHFKNINHDAGSSGSANPLPVAATKQSVDGNTLRAKLEVNKSHLAEPSTEVEAI 294
Query: 118 YSSSSLQS------NVTADLHHNIQTAGRLVFNPNSMP--------KVQ----AEEIREL 159
YSS+ + ++ ++ + +L SM KV AE I E
Sbjct: 295 YSSTEVDKLPLPGPSMDIEVMDSTLEVDKLPLPERSMDVKVVNSSLKVDKLHFAEPITEA 354
Query: 160 TTVNTEVAGYDLSQFPQPEFSSSSDLSASSGVEKGMPSSSLPLECTVDPRVDPIAQS--- 216
+++ + D P+P SSS L + V S P+ T+ P + + +
Sbjct: 355 EVIHSSLQ-VDEPLIPKPGMSSS--LENTPAVN----GHSAPISPTITPTLISVPTATMP 407
Query: 217 VRADGRTCKI----IRVRPNRPNMKFPEGSSVLH-RDNQWVA 253
V D C + I+V P +M PEG++VL DNQWVA
Sbjct: 408 VSNDRCGCYMSTNRIQVYPRHTDMVIPEGAAVLPISDNQWVA 449
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSG--QGAKSKKQAEMS 87
+YK+ LQEL QK +A P+Y + G +HAP F +TV V GE FS +G KS K+A
Sbjct: 1 MYKSRLQELCQKRRWAPPLYEPTREGPAHAPLFRATVVVNGERFSSRDEGEKSLKEAYNL 60
Query: 88 AAKVAYMRL 96
AA A+ L
Sbjct: 61 AAMAAFDNL 69
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSAA 89
YK+ LQ AQK LP Y G HAP F S V + G+ F S + + K+AE AA
Sbjct: 95 YKSQLQIYAQKRGKLLPSYRPIHGGSLHAPLFKSEVTIDGQTFESPEYCHTMKEAETVAA 154
Query: 90 KVAYMRL-KEPNPSQ 103
KVA M L +E NP+Q
Sbjct: 155 KVALMSLPQEANPTQ 169
>gi|242054547|ref|XP_002456419.1| hypothetical protein SORBIDRAFT_03g035960 [Sorghum bicolor]
gi|241928394|gb|EES01539.1| hypothetical protein SORBIDRAFT_03g035960 [Sorghum bicolor]
Length = 448
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 89/309 (28%), Positives = 142/309 (45%), Gaps = 71/309 (22%)
Query: 7 ELLRSMQRSQ-----LSMMFTNQEDD--------SVLYKNVLQELAQKEAYALPVYNTKQ 53
E R+M+ ++ +++MF QE SV YKN+LQE QKE + LP Y+T
Sbjct: 140 EYCRTMKEAETAAAKVALMFLPQEAGPTQQLPLPSVSYKNLLQEFVQKEGFPLPTYDTTL 199
Query: 54 SGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGPALVSPDIQ 113
+++ F+STVE+ G F G+ +KKQAEM+AAK+A+ K+ N G A + +
Sbjct: 200 DVSNYSAAFISTVEIQGATFRGEPGNTKKQAEMNAAKIAFQHFKDINHDAGSAGSANRLP 259
Query: 114 AQADYSSSSLQSNVTADLHHNIQTAGRLVFNPNSM--------PKVQAE------EIREL 159
A ++ SL N L ++ L+ P++ P + E E+ +L
Sbjct: 260 VAA--TTQSLDGNT---LSAKLEVNKPLLAEPSTEVDKLPLLGPSMDIEVMDSTLEVDKL 314
Query: 160 T----TVNTEVAGYDLSQFPQPEFSSSSDLSASS-------------GVEKGMPSSSLPL 202
+ +++ EV D + PE S+ +++ SS VE GM SSL
Sbjct: 315 SLPEQSIDIEVLKVD--KLHSPEASTEAEVIHSSLQVDEPLIPEPSTEVE-GM-DSSLEH 370
Query: 203 ECTVDPRVDPIAQSVRA-------------DGRTCKI----IRVRPNRPNMKFPEGSSVL 245
V+ + IA ++ + D C + I+V P +M PEG+++L
Sbjct: 371 TSVVNGQAALIAPTITSTLSMSTATMPVSNDSCGCYLGTNRIQVYPRHTDMVIPEGATML 430
Query: 246 H-RDNQWVA 253
DNQWVA
Sbjct: 431 PISDNQWVA 439
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSAA 89
YKN LQE AQK LP Y G AP F S V + G+ F S + ++ K+AE +AA
Sbjct: 94 YKNQLQEYAQKRGKLLPSYRPIHGGSLRAPLFKSEVTIDGQTFESPEYCRTMKEAETAAA 153
Query: 90 KVAYMRL-KEPNPSQ 103
KVA M L +E P+Q
Sbjct: 154 KVALMFLPQEAGPTQ 168
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSG--QGAKSKKQAEMS 87
+YK+ LQEL QK +A PVY + G +H P F +TV V GE FS +G +S K+A
Sbjct: 1 MYKSRLQELCQKRRWAPPVYEPTREGPAHTPLFRATVVVNGESFSSPDEGERSVKEACNL 60
Query: 88 AAKVAYMRL 96
AA A+ L
Sbjct: 61 AAMAAFENL 69
>gi|302793885|ref|XP_002978707.1| hypothetical protein SELMODRAFT_418544 [Selaginella moellendorffii]
gi|300153516|gb|EFJ20154.1| hypothetical protein SELMODRAFT_418544 [Selaginella moellendorffii]
Length = 675
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 62/110 (56%), Gaps = 13/110 (11%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE AQ+ LP+Y T +SG H P F TV VGG +F+G+ AK+KKQAE
Sbjct: 86 DETGVYKNLLQETAQRAGVPLPIYTTVRSGPGHLPVFTCTVGVGGMIFTGEAAKTKKQAE 145
Query: 86 MSAAKVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNI 135
+AA A+ LK+ Q S++ L+S VT + N
Sbjct: 146 KNAAMTAWSSLKQ-------------YAKQGGTSATLLESEVTEEQEQNF 182
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF 73
++KN LQELAQ+ + LP Y+ + G HAP F +TV GEVF
Sbjct: 4 MFKNQLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEVF 47
>gi|302805769|ref|XP_002984635.1| hypothetical protein SELMODRAFT_120579 [Selaginella moellendorffii]
gi|300147617|gb|EFJ14280.1| hypothetical protein SELMODRAFT_120579 [Selaginella moellendorffii]
Length = 190
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 51/73 (69%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE AQ+ LP+Y T +SG H P F TV VGG +F+G+ AK+KKQAE
Sbjct: 83 DETGVYKNLLQETAQRAGVPLPIYTTVRSGPGHLPVFTCTVGVGGMIFTGEAAKTKKQAE 142
Query: 86 MSAAKVAYMRLKE 98
+AA A+ LK+
Sbjct: 143 KNAAMTAWSSLKQ 155
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF 73
++KN LQELAQ+ + LP Y+ + G HAP F +TV GEVF
Sbjct: 1 MFKNQLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEVF 44
>gi|294464151|gb|ADE77592.1| unknown [Picea sitchensis]
Length = 505
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 65/121 (53%), Gaps = 15/121 (12%)
Query: 9 LRSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEV 68
L+S+ + S+ D+S +YKN LQE AQKE P Y T +SG SH P F STV+
Sbjct: 330 LKSLTKEGFSI------DESAMYKNFLQEFAQKEGIPFPEYVTDRSGPSHIPIFKSTVKF 383
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNVT 128
G F+G+ A SKKQAE +AA A+ +K SPD + + L+ N+T
Sbjct: 384 AGTTFAGKEANSKKQAEKNAAMAAWSAVKND---------SPDSEDTNTGTKKELEQNMT 434
Query: 129 A 129
A
Sbjct: 435 A 435
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
++KN LQE+AQK +LP Y + + G HAP F +TV G F S K+ K+A+ +A
Sbjct: 1 MFKNRLQEVAQKHCVSLPEYKSTREGPDHAPRFKATVTYNGRAFESPAFCKTAKEAQNAA 60
Query: 89 AKVAYMRL-----KEPNPSQGP 105
A+ A L + P + GP
Sbjct: 61 AEFALEVLLGKAEQRPKQANGP 82
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF 73
S ++KN LQ+LA + ++LP Y++ + G H P F + V E F
Sbjct: 264 SDMHKNQLQDLALRGGFSLPSYSSTRKGPPHVPLFKAFVTFKEETF 309
>gi|357443935|ref|XP_003592245.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|357462121|ref|XP_003601342.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355481293|gb|AES62496.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355490390|gb|AES71593.1| Double-stranded RNA binding protein [Medicago truncatula]
Length = 424
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 53/75 (70%)
Query: 24 QEDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQ 83
Q+D+S K++L EL Q+E Y+ P Y T +SG H T+ STVEV G F G+ ++SKKQ
Sbjct: 193 QKDESCPSKSLLLELTQREGYSKPTYTTIESGSLHMRTYFSTVEVEGLKFHGKASRSKKQ 252
Query: 84 AEMSAAKVAYMRLKE 98
A++ AAK+AY+ LKE
Sbjct: 253 ADIDAAKIAYIALKE 267
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGA-KSKKQAEMSA 88
++K LQ+L + ++LP Y G H P+F ++V V G F+ A S K+A+ A
Sbjct: 1 MFKTKLQQLCHQRRWSLPKYTATNDGPQHKPSFNASVHVNGVTFASSDAFNSAKEAQNQA 60
Query: 89 AKVAYMRLKEP 99
A A+ P
Sbjct: 61 AMKAFRNFTSP 71
>gi|357462125|ref|XP_003601344.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355490392|gb|AES71595.1| Double-stranded RNA binding protein [Medicago truncatula]
Length = 372
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 54/79 (68%), Gaps = 2/79 (2%)
Query: 20 MFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAK 79
MF Q+D+ K++LQEL+++E ++ P Y T Q G H PTF STVEV G F G+ +K
Sbjct: 172 MF--QKDEPCPSKSLLQELSEREGFSKPTYKTTQIGPPHMPTFFSTVEVEGIGFHGKASK 229
Query: 80 SKKQAEMSAAKVAYMRLKE 98
SK +AE AAK+AY+ LKE
Sbjct: 230 SKNKAEEDAAKIAYITLKE 248
>gi|322518582|sp|B7E321.1|DRB5_ORYSJ RecName: Full=Double-stranded RNA-binding protein 5; AltName:
Full=dsRNA-binding protein 2; Short=OsDRB2; AltName:
Full=dsRNA-binding protein 5
gi|215765071|dbj|BAG86768.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 404
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 57/96 (59%)
Query: 5 QIELLRSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVS 64
++ L R R S + D++ +YKN+LQE A + LPVY T +SG H+P F S
Sbjct: 62 EVALARLSLRGPSSSLTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFSS 121
Query: 65 TVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 100
TVE+ G F+G AK+KK AE +AA A+ LK+ N
Sbjct: 122 TVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLKQSN 157
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSG-QGAKSKKQAEMSA 88
+YKN LQELAQ+ ++LP Y + G HAP F +TV GE F G + +QAE +A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 89 AKVAYMRLKEPNPS 102
A+VA RL PS
Sbjct: 61 AEVALARLSLRGPS 74
>gi|326507276|dbj|BAJ95715.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 580
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 49/73 (67%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE A + LP+Y T +SG H PTF TVE+ G +F+G K+KKQA+
Sbjct: 83 DETGIYKNLLQETAHRAGLKLPMYTTIRSGPGHTPTFTCTVELAGRIFTGSPGKTKKQAQ 142
Query: 86 MSAAKVAYMRLKE 98
+AA A+ LK+
Sbjct: 143 KNAAMAAWSELKQ 155
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSK-KQAEMSA 88
++KN LQELAQ+ + LP Y + G HAP F +TV GE F G S +QAE +A
Sbjct: 1 MFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVTFNGESFESPGFYSTLRQAEHAA 60
Query: 89 AKVAYMRLKEPNPS 102
A+VA L + PS
Sbjct: 61 AEVALNELSKRGPS 74
>gi|224146029|ref|XP_002325853.1| predicted protein [Populus trichocarpa]
gi|222862728|gb|EEF00235.1| predicted protein [Populus trichocarpa]
Length = 291
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%)
Query: 14 RSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF 73
R + Q +S Y L + ++E P Y T++SGE+HAPTF+STVE+ G F
Sbjct: 207 RFKCKFTINGQTYESREYFPTLSKAEKREGCGFPTYCTEKSGEAHAPTFISTVEIDGVSF 266
Query: 74 SGQGAKSKKQAEMSAAKVAY 93
+G+ A++KKQAEMSAAK+AY
Sbjct: 267 TGKEARTKKQAEMSAAKIAY 286
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGG-EVFSGQGAKSKKQAEMSA 88
+YK+ LQ + + + LP Y + G+ H+P F +TV V S + S K+A+ A
Sbjct: 1 MYKSNLQAVCHQRGWELPAYQVTKQGQDHSPLFSATVTVNATSFSSPSPSSSSKKAQSDA 60
Query: 89 AKVAY 93
AK+AY
Sbjct: 61 AKLAY 65
>gi|308081633|ref|NP_001183890.1| uncharacterized protein LOC100502483 [Zea mays]
gi|238015288|gb|ACR38679.1| unknown [Zea mays]
Length = 520
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 51/73 (69%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE+AQ+ LP+Y T++SG H P F TVE+ G F+G AK+KKQAE
Sbjct: 83 DETGVYKNLLQEVAQRVGAPLPLYTTERSGLGHLPVFTCTVELAGITFAGDPAKNKKQAE 142
Query: 86 MSAAKVAYMRLKE 98
+AA A+ LK+
Sbjct: 143 KNAASAAWSALKQ 155
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 27/48 (56%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQG 77
+YKN LQELAQ+ + LP Y + G HAP F + V GE F G
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCLREGPDHAPRFKAAVNFNGEQFESPG 48
>gi|357146672|ref|XP_003574072.1| PREDICTED: double-stranded RNA-binding protein 6-like [Brachypodium
distachyon]
Length = 502
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 51/73 (69%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE+AQ+ LP Y T++SG H P F TVE+ G +F+G AK+KKQAE
Sbjct: 83 DETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFTCTVELAGIIFTGDHAKNKKQAE 142
Query: 86 MSAAKVAYMRLKE 98
+AA A+ LK+
Sbjct: 143 KNAASAAWASLKQ 155
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQG 77
+YKN LQELAQ+ + LP Y + G HAP F ++V GE+F G
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKASVTFNGELFESPG 48
>gi|255543655|ref|XP_002512890.1| double-stranded RNA binding protein, putative [Ricinus communis]
gi|223547901|gb|EEF49393.1| double-stranded RNA binding protein, putative [Ricinus communis]
Length = 477
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 49/72 (68%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE A + LPVY T +SG H PTF TVE+ G F+G+ AK+KKQAE
Sbjct: 86 DETGIYKNLLQETAHRAGLNLPVYTTIRSGPGHVPTFTCTVELAGMNFTGEPAKTKKQAE 145
Query: 86 MSAAKVAYMRLK 97
+AA A+ LK
Sbjct: 146 KNAAIAAWSALK 157
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
++KN LQELAQ+ + LP Y + G HAP F ++V GE+F S + +QAE +A
Sbjct: 4 MFKNQLQELAQRSCFNLPSYACVREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 63
Query: 89 AKVAYMRLKEPNPSQ 103
A+VA L PS+
Sbjct: 64 AEVALNVLSSRGPSR 78
>gi|242034167|ref|XP_002464478.1| hypothetical protein SORBIDRAFT_01g019110 [Sorghum bicolor]
gi|241918332|gb|EER91476.1| hypothetical protein SORBIDRAFT_01g019110 [Sorghum bicolor]
Length = 512
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 51/73 (69%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE+AQ+ LP+Y T++SG H P F TVE+ G F+G AK+KKQAE
Sbjct: 83 DETGVYKNLLQEVAQRVGAPLPLYTTERSGLGHLPVFTCTVELAGITFTGDPAKNKKQAE 142
Query: 86 MSAAKVAYMRLKE 98
+AA A+ LK+
Sbjct: 143 KNAASAAWSALKQ 155
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 27/48 (56%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQG 77
+YKN LQELAQ+ + LP Y + G HAP F + V GE F G
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPG 48
>gi|226494720|ref|NP_001142144.1| hypothetical protein [Zea mays]
gi|194707342|gb|ACF87755.1| unknown [Zea mays]
gi|414871035|tpg|DAA49592.1| TPA: hypothetical protein ZEAMMB73_748999 [Zea mays]
Length = 515
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 51/73 (69%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE+AQ+ LP+Y T++SG H P F TVE+ G F+G AK+KKQAE
Sbjct: 83 DETGVYKNLLQEVAQRVGAPLPLYTTERSGVGHLPVFTCTVELAGITFTGDHAKNKKQAE 142
Query: 86 MSAAKVAYMRLKE 98
+AA A+ LK+
Sbjct: 143 KNAASAAWSALKQ 155
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 27/48 (56%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQG 77
+YKN LQELAQ+ + LP Y + G HAP F + V GE F G
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCLREGPDHAPRFKAAVNFNGEQFESPG 48
>gi|359488565|ref|XP_002275052.2| PREDICTED: double-stranded RNA-binding protein 5 [Vitis vinifera]
Length = 484
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE A + LPVY T +SG H P F TVE+ G F+G+ AK+KKQAE
Sbjct: 86 DETGVYKNLLQETAHRAGLNLPVYTTVRSGPGHVPVFTCTVELAGMNFTGESAKTKKQAE 145
Query: 86 MSAAKVAYMRLKE-PN 100
+AA A+ LK PN
Sbjct: 146 KNAAIAAWSALKRVPN 161
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
++KN LQELAQ+ + LP Y + G HAP F ++V GE+F S + +QAE +A
Sbjct: 4 MFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 63
Query: 89 AKVAYMRLKEPNPSQ 103
A+VA L PS+
Sbjct: 64 AEVALNVLSTRGPSR 78
>gi|242083576|ref|XP_002442213.1| hypothetical protein SORBIDRAFT_08g016430 [Sorghum bicolor]
gi|241942906|gb|EES16051.1| hypothetical protein SORBIDRAFT_08g016430 [Sorghum bicolor]
Length = 198
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 52/72 (72%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 87
S+ YKN +QE+AQKE +LPVYNT + + ++ + S+V++ GE+F G+ SKKQAEM+
Sbjct: 115 SLSYKNFIQEIAQKEGISLPVYNTVPTNKENSTAYKSSVQIKGEIFEGEPGTSKKQAEMN 174
Query: 88 AAKVAYMRLKEP 99
AAK+AY L P
Sbjct: 175 AAKIAYHHLALP 186
>gi|147820257|emb|CAN71476.1| hypothetical protein VITISV_038619 [Vitis vinifera]
Length = 552
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE A + LPVY T +SG H P F TVE+ G F+G+ AK+KKQAE
Sbjct: 154 DETGVYKNLLQETAHRAGLNLPVYTTVRSGPGHVPVFTCTVELAGMNFTGESAKTKKQAE 213
Query: 86 MSAAKVAYMRLKE-PN 100
+AA A+ LK PN
Sbjct: 214 KNAAIAAWSALKRVPN 229
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
++KN LQELAQ+ + LP Y + G HAP F ++V GE+F S + +QAE +A
Sbjct: 72 MFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 131
Query: 89 AKVAYMRLKEPNPSQ 103
A+VA L PS+
Sbjct: 132 AEVALNVLSTRGPSR 146
>gi|296082307|emb|CBI21312.3| unnamed protein product [Vitis vinifera]
Length = 481
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE A + LPVY T +SG H P F TVE+ G F+G+ AK+KKQAE
Sbjct: 83 DETGVYKNLLQETAHRAGLNLPVYTTVRSGPGHVPVFTCTVELAGMNFTGESAKTKKQAE 142
Query: 86 MSAAKVAYMRLKE-PN 100
+AA A+ LK PN
Sbjct: 143 KNAAIAAWSALKRVPN 158
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
++KN LQELAQ+ + LP Y + G HAP F ++V GE+F S + +QAE +A
Sbjct: 1 MFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
Query: 89 AKVAYMRLKEPNPSQ 103
A+VA L PS+
Sbjct: 61 AEVALNVLSTRGPSR 75
>gi|168048373|ref|XP_001776641.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
gi|162671933|gb|EDQ58477.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
Length = 1053
Score = 76.3 bits (186), Expect = 1e-11, Method: Composition-based stats.
Identities = 39/79 (49%), Positives = 51/79 (64%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ + KN+LQE AQ+ +LPVY T +SG H P F TVEV FSG+ AK+KKQAE
Sbjct: 339 DETGVCKNLLQETAQRAGVSLPVYATTRSGPGHLPVFTCTVEVASMTFSGEAAKTKKQAE 398
Query: 86 MSAAKVAYMRLKEPNPSQG 104
+AA A+ LK+ S G
Sbjct: 399 KNAAMAAWSALKQCEWSSG 417
Score = 63.9 bits (154), Expect = 7e-08, Method: Composition-based stats.
Identities = 36/78 (46%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YKN LQELAQ+ + LP Y + G HAP F +TV GEVF S + +QAE +A
Sbjct: 230 MYKNQLQELAQRSCFNLPAYACIREGPDHAPRFKATVNFNGEVFESPNYCNTLRQAEHAA 289
Query: 89 AKVAYMRLKEPNPSQGPA 106
A+VA L PSQ A
Sbjct: 290 AEVALNTLSRRGPSQSLA 307
>gi|414589931|tpg|DAA40502.1| TPA: double-stranded RNA binding motif family protein [Zea mays]
Length = 354
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 56/94 (59%)
Query: 5 QIELLRSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVS 64
++ L R R + + D++ +YKN+LQE A + LP Y T +SG H+P F S
Sbjct: 62 EVALARLSLRGPSTTLAARVLDETGVYKNLLQETAHRAGLKLPAYTTVRSGPGHSPVFSS 121
Query: 65 TVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
TVE+ G F+G A++KKQAE +AA A+ LK+
Sbjct: 122 TVELAGLSFAGDPARTKKQAEKNAAMAAWSSLKQ 155
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSG-QGAKSKKQAEMSA 88
+YKN LQELAQ+ ++LP Y + G HAP F + V GE F G G + +QAE +A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFRAAVTFNGETFEGPSGCTTLRQAEHAA 60
Query: 89 AKVAYMRLKEPNPS 102
A+VA RL PS
Sbjct: 61 AEVALARLSLRGPS 74
>gi|215764986|dbj|BAG86683.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 357
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 56/94 (59%)
Query: 5 QIELLRSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVS 64
++ L R R S + D++ +YKN+LQE A + LPVY T +SG H+P F S
Sbjct: 62 EVALARLSLRGPSSSLTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFSS 121
Query: 65 TVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
TVE+ G F+G AK+KK AE +AA A+ LK+
Sbjct: 122 TVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLKQ 155
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSG-QGAKSKKQAEMSA 88
+YKN LQELAQ+ ++LP Y + G HAP F +TV GE F G + +QAE +A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 89 AKVAYMRLKEPNPS 102
A+VA RL PS
Sbjct: 61 AEVALARLSLRGPS 74
>gi|195641916|gb|ACG40426.1| double-stranded RNA binding motif family protein [Zea mays]
gi|195644492|gb|ACG41714.1| double-stranded RNA binding motif family protein [Zea mays]
Length = 352
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 56/94 (59%)
Query: 5 QIELLRSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVS 64
++ L R R + + D++ +YKN+LQE A + LP Y T +SG H+P F S
Sbjct: 62 EVALARLSLRGPSTTLAARVLDETGVYKNLLQETAHRAGLKLPAYTTVRSGPGHSPVFSS 121
Query: 65 TVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
TVE+ G F+G A++KKQAE +AA A+ LK+
Sbjct: 122 TVELAGLSFAGDPARTKKQAEKNAAMAAWSSLKQ 155
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSG-QGAKSKKQAEMSA 88
+YKN LQELAQ+ ++LP Y + G HAP F + V GE F G G + +QAE +A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFRAAVTFNGETFEGPSGCTTLRQAEHAA 60
Query: 89 AKVAYMRLKEPNPS 102
A+VA RL PS
Sbjct: 61 AEVALARLSLRGPS 74
>gi|242089535|ref|XP_002440600.1| hypothetical protein SORBIDRAFT_09g003860 [Sorghum bicolor]
gi|241945885|gb|EES19030.1| hypothetical protein SORBIDRAFT_09g003860 [Sorghum bicolor]
Length = 573
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 48/73 (65%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE A + LP+Y T +SG H P F TVE+ G+ F+G K+KKQA+
Sbjct: 83 DETGIYKNLLQETAHRAGLKLPIYTTIRSGPGHTPVFTCTVELAGKTFTGNPGKTKKQAQ 142
Query: 86 MSAAKVAYMRLKE 98
+AA A+ LK+
Sbjct: 143 KNAAMAAWSDLKQ 155
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YKN LQELAQ+ + LP Y+ + G HAP F +TV GE+F S + +QAE +A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGEMFESPAFCSTLRQAEHAA 60
Query: 89 AKVAYMRLKEPNPS 102
A+VA L + PS
Sbjct: 61 AEVALNELSKRGPS 74
>gi|224055781|ref|XP_002298650.1| predicted protein [Populus trichocarpa]
gi|222845908|gb|EEE83455.1| predicted protein [Populus trichocarpa]
Length = 357
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE A + LPVY T +SG H P F TVE+ G F+G+ AK+KKQAE
Sbjct: 83 DETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPVFTCTVELAGMNFTGEPAKTKKQAE 142
Query: 86 MSAAKVAYMRLKE-PN 100
+AA A+ LK PN
Sbjct: 143 KNAAIAAWSALKRFPN 158
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
++KN LQELAQ+ + LP Y + G HAP F ++V GE+F S + +QAE +A
Sbjct: 1 MFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
Query: 89 AKVAYMRLKEPNPSQ 103
A+VA L P++
Sbjct: 61 AEVALNVLSLRGPAR 75
>gi|326511242|dbj|BAJ87635.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 527
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 50/73 (68%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE+AQ+ LP Y T++SG H P F TVE+ G F+G AK+KKQAE
Sbjct: 83 DETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFTCTVELAGITFTGDHAKNKKQAE 142
Query: 86 MSAAKVAYMRLKE 98
+AA A+ LK+
Sbjct: 143 KNAASAAWSSLKQ 155
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 27/48 (56%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQG 77
+YKN LQELAQ+ + LP Y + G HAP F + V GE F G
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVIFNGEQFESPG 48
>gi|222641889|gb|EEE70021.1| hypothetical protein OsJ_29958 [Oryza sativa Japonica Group]
Length = 325
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 56/94 (59%)
Query: 5 QIELLRSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVS 64
++ L R R S + D++ +YKN+LQE A + LPVY T +SG H+P F S
Sbjct: 62 EVALARLSLRGPSSSLTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFSS 121
Query: 65 TVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
TVE+ G F+G AK+KK AE +AA A+ LK+
Sbjct: 122 TVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLKQ 155
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSG-QGAKSKKQAEMSA 88
+YKN LQELAQ+ ++LP Y + G HAP F +TV GE F G + +QAE +A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 89 AKVAYMRLKEPNPS 102
A+VA RL PS
Sbjct: 61 AEVALARLSLRGPS 74
>gi|222630219|gb|EEE62351.1| hypothetical protein OsJ_17140 [Oryza sativa Japonica Group]
Length = 606
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 47/73 (64%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE A + LPVY T +SG H P F TVE+ G F+G K+KKQA+
Sbjct: 96 DETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVFTCTVELAGMTFTGNPGKTKKQAQ 155
Query: 86 MSAAKVAYMRLKE 98
+AA A+ LK+
Sbjct: 156 KNAAMAAWSELKQ 168
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YKN LQELAQ+ + LP Y + G HAP F +TV GE F S + + AE +A
Sbjct: 14 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 73
Query: 89 AKVAYMRLKEPNPS 102
A+VA L + PS
Sbjct: 74 AEVALNELSKRGPS 87
>gi|387538565|gb|AFJ79551.1| double stranded RNA binding protein 3 [Oryza sativa Indica Group]
Length = 593
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 47/73 (64%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE A + LPVY T +SG H P F TVE+ G F+G K+KKQA+
Sbjct: 83 DETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVFTCTVELAGMTFTGNPGKTKKQAQ 142
Query: 86 MSAAKVAYMRLKE 98
+AA A+ LK+
Sbjct: 143 KNAAMAAWSELKQ 155
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YKN LQELAQ+ + LP Y + G HAP F +TV GE F S + + AE +A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 60
Query: 89 AKVAYMRLKEPNPS 102
A+VA L + PS
Sbjct: 61 AEVALNELSKRGPS 74
>gi|115462131|ref|NP_001054665.1| Os05g0150400 [Oryza sativa Japonica Group]
gi|122169532|sp|Q0DKP4.1|DRB2_ORYSJ RecName: Full=Double-stranded RNA-binding protein 2; AltName:
Full=dsRNA-binding protein 2; AltName:
Full=dsRNA-binding protein 3; Short=OsDRB3
gi|113578216|dbj|BAF16579.1| Os05g0150400 [Oryza sativa Japonica Group]
Length = 593
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 47/73 (64%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE A + LPVY T +SG H P F TVE+ G F+G K+KKQA+
Sbjct: 83 DETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVFTCTVELAGMTFTGNPGKTKKQAQ 142
Query: 86 MSAAKVAYMRLKE 98
+AA A+ LK+
Sbjct: 143 KNAAMAAWSELKQ 155
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YKN LQELAQ+ + LP Y + G HAP F +TV GE F S + + AE +A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 60
Query: 89 AKVAYMRLKEPNPS 102
A+VA L + PS
Sbjct: 61 AEVALNELSKRGPS 74
>gi|297746261|emb|CBI16317.3| unnamed protein product [Vitis vinifera]
Length = 280
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 50/73 (68%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE+AQ+ LP Y T +SG H P F TVE+ G F+G+ AK+KKQAE
Sbjct: 83 DETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFTGTVELAGITFTGEPAKNKKQAE 142
Query: 86 MSAAKVAYMRLKE 98
+AA A+ LK+
Sbjct: 143 KNAAMAAWSSLKQ 155
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YKN LQELAQ+ + LP Y + G HAP F +TV GE+F S + +QAE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPNYCTTLRQAEHSA 60
Query: 89 AKVAYMRLKEPNPSQ 103
A+VA L PS
Sbjct: 61 AEVALNSLSNRGPSH 75
>gi|225435325|ref|XP_002285171.1| PREDICTED: double-stranded RNA-binding protein 2-like [Vitis
vinifera]
Length = 413
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 50/73 (68%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE+AQ+ LP Y T +SG H P F TVE+ G F+G+ AK+KKQAE
Sbjct: 83 DETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFTGTVELAGITFTGEPAKNKKQAE 142
Query: 86 MSAAKVAYMRLKE 98
+AA A+ LK+
Sbjct: 143 KNAAMAAWSSLKQ 155
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YKN LQELAQ+ + LP Y + G HAP F +TV GE+F S + +QAE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPNYCTTLRQAEHSA 60
Query: 89 AKVAYMRLKEPNPSQ 103
A+VA L PS
Sbjct: 61 AEVALNSLSNRGPSH 75
>gi|168043471|ref|XP_001774208.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
gi|162674476|gb|EDQ60984.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
Length = 577
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 50/73 (68%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ + KN+LQE AQ+ +LPVY+T +SG H P F TVE+ FSG+ AK+KKQAE
Sbjct: 101 DETGVCKNLLQETAQRAGVSLPVYSTTRSGPGHLPVFTCTVELAKMTFSGEAAKTKKQAE 160
Query: 86 MSAAKVAYMRLKE 98
+AA A+ LK+
Sbjct: 161 KNAAMAAWSALKQ 173
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEM 86
+ +YKN LQELAQ+ LP Y + G HAP F +TV GE+F S + +QAE
Sbjct: 17 ACMYKNQLQELAQRSCINLPAYACIREGPDHAPRFKATVSFNGEIFESPNYCNTLRQAEH 76
Query: 87 SAAKVAYMRLKEPNPSQ 103
+AA+VA L PSQ
Sbjct: 77 AAAEVALNTLSRRGPSQ 93
>gi|297818244|ref|XP_002877005.1| dsRNA-binding protein 3 [Arabidopsis lyrata subsp. lyrata]
gi|297322843|gb|EFH53264.1| dsRNA-binding protein 3 [Arabidopsis lyrata subsp. lyrata]
Length = 356
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 50/73 (68%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE A + LPVY + +SG H PTF TVE+ G F+G+ AK+KKQAE
Sbjct: 83 DETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFSCTVELAGMSFNGESAKTKKQAE 142
Query: 86 MSAAKVAYMRLKE 98
+AA A+ L++
Sbjct: 143 KNAAIAAWFSLRK 155
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YKN LQELAQ+ + LP Y + G HAP F ++V GE+F S + +QAE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60
Query: 89 AKVAYMRLKEPNPSQ 103
A+VA L PS+
Sbjct: 61 AEVALSALSSKGPSK 75
>gi|255578155|ref|XP_002529947.1| double-stranded RNA binding protein, putative [Ricinus communis]
gi|223530577|gb|EEF32455.1| double-stranded RNA binding protein, putative [Ricinus communis]
Length = 464
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 50/73 (68%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE+AQ+ LP Y T +SG H P F TVE+ G F+G+ AK+KKQAE
Sbjct: 83 DETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHQPVFTGTVELAGITFTGEPAKNKKQAE 142
Query: 86 MSAAKVAYMRLKE 98
+AA A+ LK+
Sbjct: 143 KNAAMAAWSSLKQ 155
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YKN LQELAQ+ + LP Y + G HAP F +TV GE+F + +QAE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPHYCSTLRQAEHSA 60
Query: 89 AKVAYMRLKEPNPSQ 103
A+VA L PS
Sbjct: 61 AEVALTSLSNRGPSH 75
>gi|79420704|ref|NP_189329.3| dsRNA-binding protein 3 [Arabidopsis thaliana]
gi|145322916|ref|NP_001030779.2| dsRNA-binding protein 3 [Arabidopsis thaliana]
gi|75273549|sp|Q9LJF5.1|DRB3_ARATH RecName: Full=Double-stranded RNA-binding protein 3; AltName:
Full=dsRNA-binding protein 3; Short=AtDRB3
gi|11994159|dbj|BAB01188.1| unnamed protein product [Arabidopsis thaliana]
gi|45773934|gb|AAS76771.1| At3g26932 [Arabidopsis thaliana]
gi|62321583|dbj|BAD95129.1| putative protein [Arabidopsis thaliana]
gi|332643724|gb|AEE77245.1| dsRNA-binding protein 3 [Arabidopsis thaliana]
gi|332643725|gb|AEE77246.1| dsRNA-binding protein 3 [Arabidopsis thaliana]
Length = 359
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 50/73 (68%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE A + LPVY + +SG H PTF TVE+ G F+G+ AK+KKQAE
Sbjct: 83 DETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFSCTVELAGMSFNGESAKTKKQAE 142
Query: 86 MSAAKVAYMRLKE 98
+AA A+ L++
Sbjct: 143 KNAAIAAWFSLRK 155
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YKN LQELAQ+ ++LP Y + G HAP F ++V GE+F S + +QAE SA
Sbjct: 1 MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60
Query: 89 AKVAYMRLKEPNPSQ 103
A+VA L PS+
Sbjct: 61 AEVALSALSSKGPSK 75
>gi|125564316|gb|EAZ09696.1| hypothetical protein OsI_31979 [Oryza sativa Indica Group]
Length = 357
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 55/94 (58%)
Query: 5 QIELLRSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVS 64
++ L R R S D++ +YKN+LQE A + LPVY T +SG H+P F S
Sbjct: 62 EVALARLSLRGPSSSFTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFSS 121
Query: 65 TVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
TVE+ G F+G AK+KK AE +AA A+ LK+
Sbjct: 122 TVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLKQ 155
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSG-QGAKSKKQAEMSA 88
+YKN LQELAQ+ ++LP Y + G HAP F +TV GE F G + +QAE +A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 89 AKVAYMRLKEPNPS 102
A+VA RL PS
Sbjct: 61 AEVALARLSLRGPS 74
>gi|218184757|gb|EEC67184.1| hypothetical protein OsI_34054 [Oryza sativa Indica Group]
Length = 506
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 50/73 (68%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE+AQ+ LP Y T++SG H P F TVE+ G F+G AK+KKQAE
Sbjct: 75 DETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFTCTVELAGITFTGDPAKNKKQAE 134
Query: 86 MSAAKVAYMRLKE 98
+AA A+ L++
Sbjct: 135 KNAASAAWSSLRQ 147
>gi|226507212|ref|NP_001141877.1| hypothetical protein [Zea mays]
gi|194706274|gb|ACF87221.1| unknown [Zea mays]
gi|414589932|tpg|DAA40503.1| TPA: hypothetical protein ZEAMMB73_809711 [Zea mays]
Length = 392
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 56/94 (59%)
Query: 5 QIELLRSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVS 64
++ L R R + + D++ +YKN+LQE A + LP Y T +SG H+P F S
Sbjct: 62 EVALARLSLRGPSTTLAARVLDETGVYKNLLQETAHRAGLKLPAYTTVRSGPGHSPVFSS 121
Query: 65 TVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
TVE+ G F+G A++KKQAE +AA A+ LK+
Sbjct: 122 TVELAGLSFAGDPARTKKQAEKNAAMAAWSSLKQ 155
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSG-QGAKSKKQAEMSA 88
+YKN LQELAQ+ ++LP Y + G HAP F + V GE F G G + +QAE +A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFRAAVTFNGETFEGPSGCTTLRQAEHAA 60
Query: 89 AKVAYMRLKEPNPS 102
A+VA RL PS
Sbjct: 61 AEVALARLSLRGPS 74
>gi|147853140|emb|CAN80689.1| hypothetical protein VITISV_005501 [Vitis vinifera]
Length = 403
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 50/73 (68%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE+AQ+ LP Y T +SG H P F TVE+ G F+G+ AK+KKQAE
Sbjct: 83 DETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFTGTVELAGITFTGEPAKNKKQAE 142
Query: 86 MSAAKVAYMRLKE 98
+AA A+ LK+
Sbjct: 143 KNAAMAAWSSLKQ 155
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YKN LQELAQ+ + LP Y + G HAP F +TV GE+F S + +QAE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPNYCTTLRQAEHSA 60
Query: 89 AKVAYMRLKEPNPSQ 103
A+VA L PS
Sbjct: 61 AEVALNSLSNRGPSH 75
>gi|359487919|ref|XP_002271134.2| PREDICTED: double-stranded RNA-binding protein 2 [Vitis vinifera]
Length = 532
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 49/73 (67%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE A + LPVY T +SG H P F TVE+ G F+G+ AK+KKQA+
Sbjct: 83 DETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPVFSCTVEIAGMSFTGEAAKTKKQAQ 142
Query: 86 MSAAKVAYMRLKE 98
+AA A+ L++
Sbjct: 143 KNAAMTAWSALRK 155
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YKN LQELAQ+ + LP Y+ + G HAP F +TV GE F S + +QAE +A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGETFESPSFCSTLRQAEHAA 60
Query: 89 AKVAYMRLKEPNPSQG 104
A+VA L PS+
Sbjct: 61 AEVALNTLANRGPSKA 76
>gi|298204936|emb|CBI34243.3| unnamed protein product [Vitis vinifera]
Length = 551
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 49/73 (67%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE A + LPVY T +SG H P F TVE+ G F+G+ AK+KKQA+
Sbjct: 83 DETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPVFSCTVEIAGMSFTGEAAKTKKQAQ 142
Query: 86 MSAAKVAYMRLKE 98
+AA A+ L++
Sbjct: 143 KNAAMTAWSALRK 155
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YKN LQELAQ+ + LP Y+ + G HAP F +TV GE F S + +QAE +A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGETFESPSFCSTLRQAEHAA 60
Query: 89 AKVAYMRLKEPNPSQG 104
A+VA L PS+
Sbjct: 61 AEVALNTLANRGPSKA 76
>gi|326495676|dbj|BAJ85934.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 364
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 56/94 (59%)
Query: 5 QIELLRSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVS 64
++ L R R + + D++ +YKN+LQE A + LP Y T +SG H+P F S
Sbjct: 62 EVALARLSTRGPSTYLTARVLDETGVYKNLLQETAHRAGLKLPAYTTVRSGPGHSPVFAS 121
Query: 65 TVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
+VE+ G F+G A++KKQAE +AA A+ LK+
Sbjct: 122 SVELAGLSFAGDAARTKKQAEKNAAMTAWSALKQ 155
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSG-QGAKSKKQAEMSA 88
+YKN LQELAQ+ ++LP Y + G HAP F +TV GE F G + +QAE +A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFHGPTCCTTLRQAEHAA 60
Query: 89 AKVAYMRLKEPNPS 102
A+VA RL PS
Sbjct: 61 AEVALARLSTRGPS 74
>gi|224143644|ref|XP_002336064.1| predicted protein [Populus trichocarpa]
gi|222869865|gb|EEF06996.1| predicted protein [Populus trichocarpa]
Length = 61
Score = 75.5 bits (184), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/56 (62%), Positives = 47/56 (83%)
Query: 38 LAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAY 93
+AQ+E LP Y T++SGE+HAPTF+STVE+ G +F+G+ A++KKQAEMSAAK AY
Sbjct: 1 MAQREGCGLPTYFTEKSGEAHAPTFISTVEIDGVIFTGKEARTKKQAEMSAAKTAY 56
>gi|226498844|ref|NP_001146621.1| uncharacterized protein LOC100280218 [Zea mays]
gi|219888055|gb|ACL54402.1| unknown [Zea mays]
gi|224029829|gb|ACN33990.1| unknown [Zea mays]
gi|413917729|gb|AFW57661.1| hypothetical protein ZEAMMB73_615083 [Zea mays]
gi|413917730|gb|AFW57662.1| hypothetical protein ZEAMMB73_615083 [Zea mays]
Length = 289
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 56/96 (58%), Gaps = 6/96 (6%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE A + LP+Y T +SG H P F TVE+ G+ F+G K+KKQA+
Sbjct: 83 DETGIYKNLLQETAHRAGLKLPIYTTIRSGPGHTPVFACTVELAGKAFTGNPGKTKKQAQ 142
Query: 86 MSAAKVAYMRLK------EPNPSQGPALVSPDIQAQ 115
+AA A+ LK EP+ S P ++Q Q
Sbjct: 143 KNAAMAAWSELKKLPRVGEPSSSSCPPDQDDEVQEQ 178
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YKN LQELAQ+ + LP Y+ + G HAP F +TV GE+F S + +QAE +A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGEMFESPVFCSTLRQAEHAA 60
Query: 89 AKVAYMRLKEPNPS 102
A+VA L + PS
Sbjct: 61 AEVALNELSKRGPS 74
>gi|115482562|ref|NP_001064874.1| Os10g0480500 [Oryza sativa Japonica Group]
gi|75261835|sp|Q9AV50.1|DRB6_ORYSJ RecName: Full=Double-stranded RNA-binding protein 6; AltName:
Full=dsRNA-binding protein 5; Short=OsDRB5; AltName:
Full=dsRNA-binding protein 6
gi|13384384|gb|AAK21352.1|AC024594_16 putative extensin [Oryza sativa Japonica Group]
gi|31432702|gb|AAP54300.1| Double-stranded RNA binding motif family protein, expressed [Oryza
sativa Japonica Group]
gi|113639483|dbj|BAF26788.1| Os10g0480500 [Oryza sativa Japonica Group]
gi|125575161|gb|EAZ16445.1| hypothetical protein OsJ_31914 [Oryza sativa Japonica Group]
gi|215694820|dbj|BAG90011.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 514
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 50/73 (68%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE+AQ+ LP Y T++SG H P F TVE+ G F+G AK+KKQAE
Sbjct: 83 DETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFTCTVELAGITFTGDPAKNKKQAE 142
Query: 86 MSAAKVAYMRLKE 98
+AA A+ L++
Sbjct: 143 KNAASAAWSSLRQ 155
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 27/48 (56%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQG 77
+YKN LQELAQ+ + LP Y + G HAP F + V GE F G
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPG 48
>gi|302790644|ref|XP_002977089.1| hypothetical protein SELMODRAFT_106185 [Selaginella moellendorffii]
gi|300155065|gb|EFJ21698.1| hypothetical protein SELMODRAFT_106185 [Selaginella moellendorffii]
Length = 299
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 49/69 (71%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
L KNVLQE AQ+ ++LP+Y + +G SH F +TVE+GG ++ G AKSKK+AE+ AA
Sbjct: 87 LCKNVLQEYAQRNGFSLPIYQIEITGPSHNSVFAATVEIGGVLYKGGTAKSKKEAEVKAA 146
Query: 90 KVAYMRLKE 98
+ A + +KE
Sbjct: 147 RTAILAIKE 155
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YK+ LQE AQK + +P Y++ + G H P F ++VEV G + S G + K AE SA
Sbjct: 1 MYKSQLQEFAQKSGWTVPQYDSIKQGLPHLPRFQASVEVNGVKYESEDGFPNLKAAEHSA 60
Query: 89 AKVA 92
AK A
Sbjct: 61 AKKA 64
>gi|102139807|gb|ABF69992.1| double-stranded RNA-binding (DsRBD) domain-containing protein [Musa
acuminata]
Length = 610
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 47/73 (64%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE A + LPVY T +SG H P F TVE+ G F+G AK+KKQA+
Sbjct: 83 DETGIYKNLLQETAHRAGLKLPVYTTVRSGPGHTPIFTCTVELAGMSFTGDPAKTKKQAQ 142
Query: 86 MSAAKVAYMRLKE 98
+AA A+ LK
Sbjct: 143 KNAAMAAWSALKH 155
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YKN LQELAQ+ + LP Y + + G HAP F +TV GE F S + +QAE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYASIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHSA 60
Query: 89 AKVAYMRLKEPNPSQ 103
A+VA L + PS+
Sbjct: 61 AEVALNTLSKRGPSR 75
>gi|356539370|ref|XP_003538171.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 411
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 51/73 (69%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE+AQ+ LP Y T +SG H P F TVE+ G +F+G+ AK+KKQAE
Sbjct: 83 DETGVYKNLLQEIAQRVGAPLPQYFTFRSGLGHLPVFTGTVELAGIMFTGEPAKNKKQAE 142
Query: 86 MSAAKVAYMRLKE 98
+AA A+ LK+
Sbjct: 143 KNAAMAAWSSLKQ 155
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YKN LQELAQ+ + LP Y + G HAP F +TV GE+F S + +QAE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
Query: 89 AKVAYMRLKEPNPSQ 103
A+VA L PS
Sbjct: 61 AEVALNSLSNRAPSH 75
>gi|359806420|ref|NP_001241242.1| uncharacterized protein LOC100812728 [Glycine max]
gi|255644888|gb|ACU22944.1| unknown [Glycine max]
Length = 401
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 51/73 (69%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE+AQ+ LP Y T +SG H P F TVE+ G +F+G+ AK+KKQAE
Sbjct: 83 DETGVYKNLLQEIAQRVGAPLPQYFTFRSGLGHLPVFTGTVELAGIMFTGEPAKNKKQAE 142
Query: 86 MSAAKVAYMRLKE 98
+AA A+ LK+
Sbjct: 143 KNAAMAAWSSLKQ 155
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YKN LQELAQ+ + LP Y + G HAP F +TV GE+F S + +QAE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
Query: 89 AKVAYMRLKEPNPSQ 103
A+VA L PS
Sbjct: 61 AEVALNSLSNRAPSH 75
>gi|297822435|ref|XP_002879100.1| dsRNA-binding protein 2 [Arabidopsis lyrata subsp. lyrata]
gi|297324939|gb|EFH55359.1| dsRNA-binding protein 2 [Arabidopsis lyrata subsp. lyrata]
Length = 436
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 49/73 (67%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE+AQ+ LP Y T +SG H P F TVE+ G F+G AK+KKQAE
Sbjct: 83 DETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFTGTVELAGITFTGDPAKNKKQAE 142
Query: 86 MSAAKVAYMRLKE 98
+AA A+ LK+
Sbjct: 143 KNAAMAAWSSLKQ 155
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YKN LQELAQ+ + LP Y + G HAP F +TV GE+F S Q + +QAE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60
Query: 89 AKVAYMRLKEPNPSQ 103
A+VA L PS
Sbjct: 61 AEVALNALSNRGPSH 75
>gi|9759153|dbj|BAB09709.1| unnamed protein product [Arabidopsis thaliana]
Length = 384
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 52/83 (62%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE A + LP+Y + +SG H P F TVE+ G F+G+ AK+KKQAE
Sbjct: 83 DETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFSCTVELAGMTFTGESAKTKKQAE 142
Query: 86 MSAAKVAYMRLKEPNPSQGPALV 108
+AA A+ LK+ + A V
Sbjct: 143 KNAAIAAWSSLKKKKEQEAVARV 165
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YKN LQELAQ+ + LP Y + G HAP F ++V GE+F S + +QAE +A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60
Query: 89 AKVAYMRLKEPNPSQ 103
A+V+ L PS+
Sbjct: 61 AEVSLNVLSSRVPSK 75
>gi|18401724|ref|NP_565672.1| dsRNA-binding protein 2 [Arabidopsis thaliana]
gi|75266001|sp|Q9SKN2.1|DRB2_ARATH RecName: Full=Double-stranded RNA-binding protein 2; AltName:
Full=dsRNA-binding protein 2; Short=AtDRB2
gi|4432839|gb|AAD20688.1| expressed protein [Arabidopsis thaliana]
gi|14334606|gb|AAK59481.1| unknown protein [Arabidopsis thaliana]
gi|17065634|gb|AAL33811.1| unknown protein [Arabidopsis thaliana]
gi|330253020|gb|AEC08114.1| dsRNA-binding protein 2 [Arabidopsis thaliana]
Length = 434
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 49/73 (67%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE+AQ+ LP Y T +SG H P F TVE+ G F+G AK+KKQAE
Sbjct: 83 DETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFTGTVELAGITFTGDPAKNKKQAE 142
Query: 86 MSAAKVAYMRLKE 98
+AA A+ LK+
Sbjct: 143 KNAAMAAWSSLKQ 155
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YKN LQELAQ+ + LP Y + G HAP F +TV GE+F S Q + +QAE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60
Query: 89 AKVAYMRLKEPNPSQ 103
A+VA L PS
Sbjct: 61 AEVALNALSNRGPSH 75
>gi|357134637|ref|XP_003568923.1| PREDICTED: double-stranded RNA-binding protein 2-like [Brachypodium
distachyon]
Length = 559
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 47/73 (64%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE A + LP Y T +SG H P F TVE+ G +F+G K+KKQA+
Sbjct: 83 DETGIYKNLLQETAHRAGLKLPEYTTIRSGPGHTPMFTCTVELAGRIFTGNPGKTKKQAQ 142
Query: 86 MSAAKVAYMRLKE 98
+AA A+ LK+
Sbjct: 143 KNAAMAAWSELKQ 155
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YKN LQELAQ+ + LP Y + G HAP F +TV GE F S + +QAE +A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGESFESPTFCSTLRQAEHAA 60
Query: 89 AKVAYMRLKEPNPS 102
A+VA L + PS
Sbjct: 61 AEVALNELSKRGPS 74
>gi|357453939|ref|XP_003597250.1| Ribonuclease [Medicago truncatula]
gi|355486298|gb|AES67501.1| Ribonuclease [Medicago truncatula]
Length = 408
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE+AQ+ LP Y T +SG H P F VE+ G F+G+ AK+KKQAE
Sbjct: 83 DETGVYKNLLQEIAQRVGAPLPQYTTYRSGLGHLPVFTGIVELAGITFTGEPAKNKKQAE 142
Query: 86 MSAAKVAYMRLKE 98
+AA A+ LK+
Sbjct: 143 KNAAMAAWSSLKQ 155
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YKN LQELAQ+ + LP Y + G HAP F +TV GE+F S + +QAE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
Query: 89 AKVAYMRLKEPNPSQ 103
A+VA L PS
Sbjct: 61 AEVALNSLSHRGPSH 75
>gi|255542426|ref|XP_002512276.1| hypothetical protein RCOM_1429110 [Ricinus communis]
gi|223548237|gb|EEF49728.1| hypothetical protein RCOM_1429110 [Ricinus communis]
Length = 568
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 48/72 (66%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE A + LPVY T +SG H P F TVE+ G F+G+ A++KKQA+
Sbjct: 83 DETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHVPVFSCTVELAGMSFTGEPARTKKQAQ 142
Query: 86 MSAAKVAYMRLK 97
+AA A+ LK
Sbjct: 143 KNAAMAAWSALK 154
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YKN LQELAQ+ + LP Y+ + G HAP F +TV GE F S + +QAE +A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGETFESPAFCSTLRQAEHAA 60
Query: 89 AKVAYMRLKEPNPSQG 104
A+VA L PS+
Sbjct: 61 AEVALNTLASRGPSRA 76
>gi|356547178|ref|XP_003541993.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 393
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE+AQ+ LP Y T +SG H P F VE+ G F+G+ AK+KKQAE
Sbjct: 83 DETGVYKNLLQEIAQRVGAPLPHYTTYRSGLGHLPVFTGIVELAGITFTGEPAKNKKQAE 142
Query: 86 MSAAKVAYMRLKE 98
+AA A+ LK+
Sbjct: 143 KNAAMAAWSALKQ 155
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YKN LQELAQ+ + LP Y + G HAP F +TV GE+F + + +QAE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFETPHYCSTLRQAEHSA 60
Query: 89 AKVAYMRLKEPNPSQ 103
A+ A L PS
Sbjct: 61 AEAALNSLSHRGPSH 75
>gi|356543448|ref|XP_003540172.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 411
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE+AQ+ LP Y T +SG H P F VE+ G F+G+ AK+KKQAE
Sbjct: 83 DETGVYKNLLQEIAQRVGAPLPHYTTYRSGLGHLPVFTGIVELAGITFTGEPAKNKKQAE 142
Query: 86 MSAAKVAYMRLKE 98
+AA A+ LK+
Sbjct: 143 KNAAMAAWSALKQ 155
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YKN LQELAQ+ + LP Y + G HAP F +TV GE+F S + +QAE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
Query: 89 AKVAYMRLKEPNPSQ 103
A+VA L PS
Sbjct: 61 AEVALNSLSHRGPSH 75
>gi|413917728|gb|AFW57660.1| hypothetical protein ZEAMMB73_615083 [Zea mays]
Length = 170
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 48/73 (65%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE A + LP+Y T +SG H P F TVE+ G+ F+G K+KKQA+
Sbjct: 83 DETGIYKNLLQETAHRAGLKLPIYTTIRSGPGHTPVFACTVELAGKAFTGNPGKTKKQAQ 142
Query: 86 MSAAKVAYMRLKE 98
+AA A+ LK+
Sbjct: 143 KNAAMAAWSELKK 155
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YKN LQELAQ+ + LP Y+ + G HAP F +TV GE+F S + +QAE +A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGEMFESPVFCSTLRQAEHAA 60
Query: 89 AKVAYMRLKEPNPS 102
A+VA L + PS
Sbjct: 61 AEVALNELSKRGPS 74
>gi|30693732|ref|NP_198923.2| dsRNA-binding protein 5 [Arabidopsis thaliana]
gi|75244423|sp|Q8GY79.1|DRB5_ARATH RecName: Full=Double-stranded RNA-binding protein 5; AltName:
Full=dsRNA-binding protein 5; Short=AtDRB5
gi|26450682|dbj|BAC42450.1| unknown protein [Arabidopsis thaliana]
gi|32189297|gb|AAP75803.1| At5g41070 [Arabidopsis thaliana]
gi|332007250|gb|AED94633.1| dsRNA-binding protein 5 [Arabidopsis thaliana]
Length = 393
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 49/73 (67%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE A + LP+Y + +SG H P F TVE+ G F+G+ AK+KKQAE
Sbjct: 83 DETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFSCTVELAGMTFTGESAKTKKQAE 142
Query: 86 MSAAKVAYMRLKE 98
+AA A+ LK+
Sbjct: 143 KNAAIAAWSSLKK 155
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YKN LQELAQ+ + LP Y + G HAP F ++V GE+F S + +QAE +A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60
Query: 89 AKVAYMRLKEPNPSQ 103
A+V+ L PS+
Sbjct: 61 AEVSLNVLSSRVPSK 75
>gi|449443363|ref|XP_004139447.1| PREDICTED: double-stranded RNA-binding protein 2-like [Cucumis
sativus]
Length = 414
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE+AQ+ LP Y T +SG H P F VE+ G F+G+ AK+KKQAE
Sbjct: 83 DETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFTGIVELAGITFTGEPAKNKKQAE 142
Query: 86 MSAAKVAYMRLKE 98
+AA A+ LK+
Sbjct: 143 KNAAMAAWSALKQ 155
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YKN LQELAQ+ + LP Y + G HAP F +TV GE+F Q + +QAE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
Query: 89 AKVAYMRL 96
A+VA L
Sbjct: 61 AEVALNAL 68
>gi|449523610|ref|XP_004168816.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-binding protein
2-like [Cucumis sativus]
Length = 414
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE+AQ+ LP Y T +SG H P F VE+ G F+G+ AK+KKQAE
Sbjct: 83 DETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFTGIVELAGITFTGEPAKNKKQAE 142
Query: 86 MSAAKVAYMRLKE 98
+AA A+ LK+
Sbjct: 143 KNAAMAAWSALKQ 155
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YKN LQELAQ+ + LP Y + G HAP F +TV GE+F Q + +QAE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
Query: 89 AKVAYMRL 96
A+VA L
Sbjct: 61 AEVALNAL 68
>gi|168043507|ref|XP_001774226.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
gi|162674494|gb|EDQ61002.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
Length = 683
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ + KN+LQE AQ+ +LPVY T +SG H P F TVEV FSG+ AK+KKQAE
Sbjct: 147 DETGVCKNLLQETAQRAGVSLPVYATTRSGPGHLPVFTCTVEVANMSFSGEAAKTKKQAE 206
Query: 86 MSAAKVAYMRLKE 98
+AA A+ +++
Sbjct: 207 KNAAMAAWSAIQQ 219
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMS 87
+YKN LQELAQ+ + LP Y + G HAP F +TV GEVF S + +QAE +
Sbjct: 64 CMYKNQLQELAQRSCFNLPAYACIREGPDHAPRFKATVNFNGEVFESPNYCNTLRQAEHA 123
Query: 88 AAKVAYMRLKEPNPSQ 103
AA+VA L PSQ
Sbjct: 124 AAEVALNTLSRRGPSQ 139
>gi|302782383|ref|XP_002972965.1| hypothetical protein SELMODRAFT_441949 [Selaginella moellendorffii]
gi|302823467|ref|XP_002993386.1| hypothetical protein SELMODRAFT_431451 [Selaginella moellendorffii]
gi|300138817|gb|EFJ05571.1| hypothetical protein SELMODRAFT_431451 [Selaginella moellendorffii]
gi|300159566|gb|EFJ26186.1| hypothetical protein SELMODRAFT_441949 [Selaginella moellendorffii]
Length = 386
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 46/73 (63%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ ++KN+LQE AQ+ LP Y T +SG H P F VEV G F+G K+KKQAE
Sbjct: 83 DETGVFKNLLQETAQRANVPLPTYTTTRSGPGHLPVFTCVVEVAGMNFTGDAGKTKKQAE 142
Query: 86 MSAAKVAYMRLKE 98
+AA A+ LK+
Sbjct: 143 KNAAMAAWATLKQ 155
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 28/44 (63%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF 73
+YKN LQELAQ+ + LP Y+ + G HAP F + V GEVF
Sbjct: 1 MYKNQLQELAQRSCFNLPAYSCIREGPDHAPRFKAAVNFNGEVF 44
>gi|297805542|ref|XP_002870655.1| dsRNA-binding protein 5 [Arabidopsis lyrata subsp. lyrata]
gi|297316491|gb|EFH46914.1| dsRNA-binding protein 5 [Arabidopsis lyrata subsp. lyrata]
Length = 394
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 48/72 (66%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE A + LP+Y + +SG H P F TVE+ G F+G+ AK+KKQAE
Sbjct: 83 DETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFSCTVELAGMSFTGESAKTKKQAE 142
Query: 86 MSAAKVAYMRLK 97
+AA A+ LK
Sbjct: 143 KNAAIAAWSSLK 154
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YKN LQELAQ+ + LP Y + G HAP F ++V GE+F S + +QAE +A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60
Query: 89 AKVAYMRLKEPNPSQ 103
A+V+ L PS+
Sbjct: 61 AEVSLNVLSSRVPSK 75
>gi|357515751|ref|XP_003628164.1| DsRNA-binding protein [Medicago truncatula]
gi|355522186|gb|AET02640.1| DsRNA-binding protein [Medicago truncatula]
Length = 96
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/50 (68%), Positives = 40/50 (80%)
Query: 47 PVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
PVY+T +SGE+H P F S VE+ GE+F+GQ AKSKK AEMSAAKVAY L
Sbjct: 41 PVYSTNKSGEAHKPIFSSQVEIKGEIFTGQEAKSKKHAEMSAAKVAYKFL 90
>gi|242092788|ref|XP_002436884.1| hypothetical protein SORBIDRAFT_10g010510 [Sorghum bicolor]
gi|241915107|gb|EER88251.1| hypothetical protein SORBIDRAFT_10g010510 [Sorghum bicolor]
Length = 243
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 49/69 (71%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 87
S+ YKN +QE+AQKE LPVYNT + + ++ + S+V++ E+F G+ SKKQAEM+
Sbjct: 160 SLSYKNFIQEIAQKEGILLPVYNTVPTNKEYSTAYKSSVQIKCEIFEGEPRTSKKQAEMN 219
Query: 88 AAKVAYMRL 96
AAK+AY L
Sbjct: 220 AAKIAYHHL 228
>gi|148907218|gb|ABR16750.1| unknown [Picea sitchensis]
Length = 388
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 49/73 (67%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
DD+ +YKN+LQE+A + +LPVY T +SG +H P F V+V G F+G+ A +KKQAE
Sbjct: 83 DDTGVYKNLLQEIAHRAGLSLPVYTTTRSGPAHLPVFKCIVDVFGTRFNGKPAATKKQAE 142
Query: 86 MSAAKVAYMRLKE 98
+ A A+ LK+
Sbjct: 143 QNTAMAAWSALKQ 155
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YKN LQELAQ+ + LP+Y + G HAP F +TV GE+F S + +QAE+ A
Sbjct: 1 MYKNQLQELAQRNCFNLPLYGCIRKGPDHAPRFRATVNFNGEIFESPNYCSTLRQAELVA 60
Query: 89 AKVAYMRLKEPNPSQGPALVSPDIQAQADY 118
A+VA L + PS +LV+ D+ Y
Sbjct: 61 AEVAVNTLSKRGPSG--SLVAKDLDDTGVY 88
>gi|297736909|emb|CBI26110.3| unnamed protein product [Vitis vinifera]
Length = 826
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 47/72 (65%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE A + LPVY T +SG H P F TV++ F+G+ AK+KKQA+
Sbjct: 83 DETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHIPVFFCTVDIAKMSFTGEPAKTKKQAQ 142
Query: 86 MSAAKVAYMRLK 97
+AA A+ LK
Sbjct: 143 KNAAMAAWSALK 154
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YKN LQELAQ+ + LP Y + G HAP F +TV GEVF S + +QAE +A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEVFESPTFCNTLRQAEHAA 60
Query: 89 AKVAYMRLKEPNPSQGPA 106
A+VA L + PS+ A
Sbjct: 61 AEVALNVLSKNGPSKALA 78
>gi|225432380|ref|XP_002276654.1| PREDICTED: double-stranded RNA-binding protein 2-like [Vitis
vinifera]
Length = 563
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 47/72 (65%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE A + LPVY T +SG H P F TV++ F+G+ AK+KKQA+
Sbjct: 83 DETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHIPVFFCTVDIAKMSFTGEPAKTKKQAQ 142
Query: 86 MSAAKVAYMRLK 97
+AA A+ LK
Sbjct: 143 KNAAMAAWSALK 154
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YKN LQELAQ+ + LP Y + G HAP F +TV GEVF S + +QAE +A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEVFESPTFCNTLRQAEHAA 60
Query: 89 AKVAYMRLKEPNPSQG 104
A+VA L + PS+
Sbjct: 61 AEVALNVLSKNGPSKA 76
>gi|357512161|ref|XP_003626369.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355501384|gb|AES82587.1| Double-stranded RNA binding protein [Medicago truncatula]
Length = 505
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 48/73 (65%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE A + LPVY T ++G H P F TVE+ G F+G A++KKQA+
Sbjct: 83 DETGVYKNLLQETAHRAGLNLPVYRTIRAGPGHVPNFYCTVEIAGMHFTGDPARTKKQAQ 142
Query: 86 MSAAKVAYMRLKE 98
+AA A+ L++
Sbjct: 143 KNAAIAAWSALRK 155
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YKN LQELAQ+ + LP Y+ + G HAP F TV GE F S + +QAE +A
Sbjct: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKVTVNFNGETFESPTFCSTLRQAEHAA 60
Query: 89 AKVAYMRLKEPNPSQ 103
A+VA L PS+
Sbjct: 61 AEVALNTLATRGPSR 75
>gi|356504084|ref|XP_003520829.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 539
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 48/73 (65%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE A + LPVY T +SG H P F TVE+ G F+G +++KKQA+
Sbjct: 83 DETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHGPNFSCTVEIAGMHFTGDPSRTKKQAQ 142
Query: 86 MSAAKVAYMRLKE 98
+AA A+ L++
Sbjct: 143 KNAAMAAWSALRK 155
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YKN LQELAQ+ + LP Y+ + G HAP F +TV GE F S + +QAE +A
Sbjct: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGETFESPTFCSTLRQAEHAA 60
Query: 89 AKVAYMRLKEPNPSQG 104
A+VA L + PS+
Sbjct: 61 AEVALNTLAKRGPSRA 76
>gi|224130800|ref|XP_002328379.1| predicted protein [Populus trichocarpa]
gi|222838094|gb|EEE76459.1| predicted protein [Populus trichocarpa]
Length = 159
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 47/72 (65%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE A + LPVY T +SG H P F VE+ G F+G+ A++KKQA+
Sbjct: 83 DETGVYKNLLQETAHRAGLKLPVYTTIRSGPGHVPVFSCNVELAGMSFTGESARTKKQAQ 142
Query: 86 MSAAKVAYMRLK 97
+AA A+ LK
Sbjct: 143 KNAAMAAWSALK 154
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSK-KQAEMSA 88
+YKN LQELAQ+ + LP Y+ + G HAP F STV GE F S + AE +A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKSTVNFNGETFESPTFYSTLRLAEHAA 60
Query: 89 AKVAYMRLKEPNPSQGPALVS 109
A+VA L PS+ AL++
Sbjct: 61 AEVALNTLASRGPSK--ALIA 79
>gi|75251129|sp|Q5N8Z0.1|DRB1_ORYSJ RecName: Full=Double-stranded RNA-binding protein 1; AltName:
Full=dsRNA-binding protein 1
gi|56785214|dbj|BAD82066.1| putative dsRNA-binding protein ODB1 [Oryza sativa Japonica Group]
Length = 441
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 8/92 (8%)
Query: 15 SQLSMMFTNQEDDS--------VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTV 66
++L++M QE S + YKN+LQELAQK ++LPVY+T G P F STV
Sbjct: 146 AKLALMSLPQEASSSEQVPVQPLSYKNLLQELAQKHGFSLPVYSTTSDGSVQVPMFKSTV 205
Query: 67 EVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
F G+ A +KKQAEM+AA+VA+ ++
Sbjct: 206 VFQDGSFQGEPANTKKQAEMNAARVAFQHFED 237
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSG--QGAKSKKQAEMS 87
+YK+ LQEL Q+ +A P Y + +G +HAP F +TV V G F A+S K+A
Sbjct: 1 MYKSRLQELCQQRRWAPPEYTHRCAGPAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNI 60
Query: 88 AAKVAY 93
AAK A+
Sbjct: 61 AAKAAF 66
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSAA 89
YK+ LQ AQK+ LP Y T + G HA F S V V G+ F S + + K+AE +AA
Sbjct: 87 YKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKSVVTVDGKAFESPEYFHTVKEAESAAA 146
Query: 90 KVAYMRL 96
K+A M L
Sbjct: 147 KLALMSL 153
>gi|357443947|ref|XP_003592251.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|357462133|ref|XP_003601348.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355481299|gb|AES62502.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355490396|gb|AES71599.1| Double-stranded RNA binding protein [Medicago truncatula]
Length = 443
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 46/67 (68%)
Query: 32 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 91
K++LQEL Q+ ++P Y + ++G H PTF STVEV G F G+ + SKK+AE AAK+
Sbjct: 245 KSLLQELTQRRYCSIPTYKSTRTGPPHMPTFFSTVEVEGVEFHGKASSSKKEAEYDAAKI 304
Query: 92 AYMRLKE 98
AY LK+
Sbjct: 305 AYKALKD 311
Score = 37.0 bits (84), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFSGQGA-KSKKQAEMS 87
+YK+ LQE + ++LP Y++ G H P+F +V V G F+ S K+A
Sbjct: 33 MYKSRLQEFCHRRKWSLPEYSSIYVDGPPHNPSFKGSVFVNGLTFTSSDIFHSSKEAHNQ 92
Query: 88 AAKVAYMRLKEP 99
AA A + P
Sbjct: 93 AAMKALLNFSYP 104
>gi|218189128|gb|EEC71555.1| hypothetical protein OsI_03907 [Oryza sativa Indica Group]
Length = 1030
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 45/68 (66%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
YKN+LQELAQK ++LPVY+T G P F STV F G+ A +KKQAEM+AA+
Sbjct: 170 YKNLLQELAQKHGFSLPVYSTTSDGSVQVPMFKSTVVFQDGSFQGEPANTKKQAEMNAAR 229
Query: 91 VAYMRLKE 98
VA+ ++
Sbjct: 230 VAFQHFED 237
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSG--QGAKSKKQAEMS 87
+YK+ LQEL Q+ +A P Y + +G +HAP F +TV V G F A+S K+A
Sbjct: 1 MYKSRLQELCQQRRWAPPEYTHRCAGLAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNI 60
Query: 88 AAKVAY 93
AAK A+
Sbjct: 61 AAKAAF 66
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSAA 89
YK+ LQ AQK+ LP Y T + G HA F S V V G+ F S + + K+AE +AA
Sbjct: 87 YKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKSVVTVDGKAFESPEYFHTVKEAESAAA 146
Query: 90 KVAYMRL 96
K+A M L
Sbjct: 147 KLALMSL 153
>gi|356514617|ref|XP_003526002.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 265
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 49/72 (68%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN++QE+AQ+ LP Y T +SG H P F+ VE+ G F+G+ AK+KKQAE
Sbjct: 83 DETGVYKNLVQEIAQRVGAPLPHYITYRSGLGHLPIFIRIVELTGITFTGEPAKNKKQAE 142
Query: 86 MSAAKVAYMRLK 97
+AA A+ LK
Sbjct: 143 KNAAMAAWSALK 154
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YKN LQELAQ+ + LP Y + + G +HAP F +T++ GE+F + + +QAE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYMSIREGPNHAPRFKATIKFNGEIFETPHYCSTLRQAEHSA 60
Query: 89 AKVAYMRLKEPNPSQGPA 106
A+V L PS A
Sbjct: 61 AEVPLNSLSHRGPSHSLA 78
>gi|358348579|ref|XP_003638322.1| Ribonuclease, partial [Medicago truncatula]
gi|355504257|gb|AES85460.1| Ribonuclease, partial [Medicago truncatula]
Length = 160
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 54/89 (60%)
Query: 32 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 91
K++LQEL Q+ ++P Y + ++G H PTF STVEV G F G+ + SKK+AE AAK+
Sbjct: 6 KSLLQELTQRRYCSIPTYKSTRTGPPHMPTFFSTVEVEGVEFHGKASSSKKEAEYDAAKI 65
Query: 92 AYMRLKEPNPSQGPALVSPDIQAQADYSS 120
AY LK+ A S + QA+ S+
Sbjct: 66 AYKALKDGGLHMYAAFSSSIKKNQAEQST 94
>gi|168061835|ref|XP_001782891.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
gi|162665613|gb|EDQ52291.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
Length = 151
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 57/89 (64%), Gaps = 3/89 (3%)
Query: 9 LRSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEV 68
L +Q++Q ++ + +S L KN+LQE AQK Y LP Y + + GE H+ F STVE+
Sbjct: 65 LDFLQKTQFKVVPVH---ESGLCKNLLQEFAQKHGYPLPQYKSVRQGEEHSLVFSSTVEI 121
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLK 97
G +SG AKSKK+AE+ AA+ A + ++
Sbjct: 122 AGVSYSGGCAKSKKEAEIKAARTALLAIQ 150
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF 73
+YK+ LQE AQK+ P Y + G SH P F STV V G +
Sbjct: 1 MYKSQLQEYAQKQGLMSPSYEYVKEGASHEPRFKSTVWVNGRGY 44
>gi|356571155|ref|XP_003553745.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 538
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 48/73 (65%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE A + LPVY T +SG H P F +VE+ G F+G +++KKQA+
Sbjct: 83 DETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHGPNFSCSVEIAGMHFTGDPSRTKKQAQ 142
Query: 86 MSAAKVAYMRLKE 98
+AA A+ L++
Sbjct: 143 KNAAMAAWSALRK 155
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YKN LQELAQ+ + LP Y+ + G HAP F +TV GE F S + +QAE +A
Sbjct: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGETFESPTFCSTLRQAEHAA 60
Query: 89 AKVAYMRLKEPNPS 102
A+VA + + PS
Sbjct: 61 AEVALNTIAKRGPS 74
>gi|222619325|gb|EEE55457.1| hypothetical protein OsJ_03618 [Oryza sativa Japonica Group]
Length = 351
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 8/92 (8%)
Query: 15 SQLSMMFTNQEDDS--------VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTV 66
++L++M QE S + YKN+LQELAQK ++LPVY+T G P F STV
Sbjct: 146 AKLALMSLPQEASSSEQVPVQPLSYKNLLQELAQKHGFSLPVYSTTSDGSVQVPMFKSTV 205
Query: 67 EVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
F G+ A +KKQAEM+AA+VA+ ++
Sbjct: 206 VFQDGSFQGEPANTKKQAEMNAARVAFQHFED 237
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSG--QGAKSKKQAEMS 87
+YK+ LQEL Q+ +A P Y + +G +HAP F +TV V G F A+S K+A
Sbjct: 1 MYKSRLQELCQQRRWAPPEYTHRCAGPAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNI 60
Query: 88 AAKVA 92
AAK A
Sbjct: 61 AAKAA 65
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSAA 89
YK+ LQ AQK+ LP Y T + G HA F S V V G+ F S + + K+AE +AA
Sbjct: 87 YKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKSVVTVDGKAFESPEYFHTVKEAESAAA 146
Query: 90 KVAYMRL 96
K+A M L
Sbjct: 147 KLALMSL 153
>gi|388495920|gb|AFK36026.1| unknown [Lotus japonicus]
Length = 170
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 48/73 (65%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE A + LPVY T +SG H P + TVE+ G F+G A++KKQA+
Sbjct: 83 DETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPNYSCTVEIAGMHFTGDPARTKKQAQ 142
Query: 86 MSAAKVAYMRLKE 98
+AA A+ L++
Sbjct: 143 KNAAMAAWSALRK 155
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YKN LQELAQ+ + LP Y+ + G HAP F +TV GE F S + +QAE +A
Sbjct: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAA 60
Query: 89 AKVAYMRLKEPNPSQGPA 106
A+VA E PS+ A
Sbjct: 61 AEVALNTFAERGPSRALA 78
>gi|40788412|dbj|BAD07039.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 397
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 48/81 (59%)
Query: 5 QIELLRSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVS 64
++ L R R S + D++ +YKN+LQE A + LPVY T +SG H+P F S
Sbjct: 85 EVALARLSLRGPSSSLTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFSS 144
Query: 65 TVEVGGEVFSGQGAKSKKQAE 85
TVE+ G F+G AK+KK AE
Sbjct: 145 TVELAGMSFAGDPAKTKKHAE 165
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 25 EDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSG-QGAKSKKQ 83
E +YKN LQELAQ+ ++LP + G HAP F +TV GE F G + +Q
Sbjct: 19 EGGGSMYKNQLQELAQRSCFSLPSNVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQ 78
Query: 84 AEMSAAKVAYMRLKEPNPS 102
AE +AA+VA RL PS
Sbjct: 79 AEHAAAEVALARLSLRGPS 97
>gi|27262835|emb|CAD59426.1| dsRNA-binding protein [Brassica oleracea var. gongylodes]
gi|27262839|emb|CAD59428.1| dsRNA-binding protein [Brassica oleracea var. gemmifera]
Length = 283
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGE-SHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
L KN+LQE AQK YA+P+Y ++S AP F TVE+GG ++G K+KK+AE+SA
Sbjct: 101 LCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAEISA 160
Query: 89 AKVAYMRLK 97
+ A + ++
Sbjct: 161 GRTALIAIQ 169
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 27 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAE 85
+ ++K+ LQE AQ+ P+Y + G SH P F STV V + S G ++K AE
Sbjct: 12 NCYVFKSRLQEYAQRYKLPTPLYEAIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAE 71
Query: 86 MSAAKVAYMRL 96
SAA+VA L
Sbjct: 72 QSAAEVALQEL 82
>gi|50511725|gb|AAT77415.1| dsRNA-binding protein LH [Brassica rapa subsp. chinensis]
Length = 274
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGE-SHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
L KN+LQE AQK YA+P+Y ++S AP F TVE+GG ++G K+KK+AE+SA
Sbjct: 101 LCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAEISA 160
Query: 89 AKVAYMRLK 97
+ A + ++
Sbjct: 161 GRTALIAIQ 169
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 27 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAE 85
+ ++K+ LQE AQ+ P+Y T + G SH P STV V + S G ++K AE
Sbjct: 12 NCYVFKSRLQEYAQRYKLPTPLYETIKEGPSHKPLIQSTVIVNDVRYDSLPGFFNRKAAE 71
Query: 86 MSAAKVAYMRL 96
SAA+VA L
Sbjct: 72 QSAAEVALQEL 82
>gi|9967526|emb|CAC05659.1| RBP2 protein [Brassica oleracea var. capitata]
Length = 283
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGE-SHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
L KN+LQE AQK YA+P+Y ++S AP F TVE+GG ++G K+KK+AE+SA
Sbjct: 101 LCKNLLQEYAQKMNYAIPLYQCQKSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAEISA 160
Query: 89 AKVAYMRLK 97
+ A + ++
Sbjct: 161 GRTALIAIQ 169
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 27 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAE 85
+ ++K+ LQE AQK P+Y T + G SH F STV V G + S G ++K AE
Sbjct: 12 NCYVFKSRLQEYAQKYKLPTPIYETVKEGPSHKSLFQSTVIVDGVRYDSLPGFFNRKAAE 71
Query: 86 MSAAKVAYMRL 96
SAA+VA L
Sbjct: 72 QSAAEVALQEL 82
>gi|27262831|emb|CAD59424.1| dsRNA-binding protein [Brassica oleracea var. acephala]
Length = 283
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGE-SHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
L KN+LQE AQK YA+P+Y ++S AP F TVE+GG ++G K+KK+AE+SA
Sbjct: 101 LCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAEISA 160
Query: 89 AKVAYMRLK 97
+ A + ++
Sbjct: 161 GRTALIAIQ 169
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 27 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAE 85
+ ++K+ LQE AQ+ P+Y + G SH P F STV V + S G ++K AE
Sbjct: 12 NCYVFKSRLQEYAQRYKLPTPLYEAIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAE 71
Query: 86 MSAAKVAYMRL 96
SAA+VA L
Sbjct: 72 QSAAEVALQEL 82
>gi|27262837|emb|CAD59427.1| dsRNA-binding protein [Brassica oleracea var. italica]
Length = 283
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGE-SHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
L KN+LQE AQK YA+P+Y ++S AP F TVE+GG ++G K+KK+AE+SA
Sbjct: 101 LCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAEISA 160
Query: 89 AKVAYMRLK 97
+ A + ++
Sbjct: 161 GRTALIAIQ 169
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 27 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAE 85
+ ++K+ LQE AQ+ P+Y + G SH P F STV V + S G ++K AE
Sbjct: 12 NCYVFKSRLQEYAQRYKLPTPLYEAIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAE 71
Query: 86 MSAAKVAYMRL 96
SAA+VA L
Sbjct: 72 QSAAEVALQEL 82
>gi|8346542|emb|CAB93934.1| BcpLH protein [Brassica rapa subsp. pekinensis]
gi|50511731|gb|AAT77418.1| dsRNA-binding protein LH-c [Brassica napus]
Length = 274
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGE-SHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
L KN+LQE AQK YA+P+Y ++S AP F TVE+GG ++G K+KK+AE+SA
Sbjct: 101 LCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAEISA 160
Query: 89 AKVAYMRLK 97
+ A + ++
Sbjct: 161 GRTALIAIQ 169
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 27 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAE 85
+ ++K+ LQE AQ+ P+Y T + G SH P F STV V + S G ++K AE
Sbjct: 12 NCYVFKSRLQEYAQRYKLPTPLYETIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAE 71
Query: 86 MSAAKVAYMRL 96
SAA+VA L
Sbjct: 72 QSAAEVALQEL 82
>gi|27262829|emb|CAD59423.1| dsRNA-binding protein [Brassica rapa subsp. rapa]
Length = 275
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGE-SHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
L KN+LQE AQK YA+P+Y ++S AP F TVE+GG ++G K+KK+AE+SA
Sbjct: 101 LCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAEISA 160
Query: 89 AKVAYMRLK 97
+ A + ++
Sbjct: 161 GRTALIAIQ 169
Score = 43.9 bits (102), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 27 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAE 85
+ ++K+ LQE AQ+ P+Y T + G SH P F STV V + S G ++K AE
Sbjct: 12 NCYVFKSRLQEYAQRYKLPTPLYETIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAE 71
Query: 86 MSAAKVAYMRL 96
SAA+VA L
Sbjct: 72 QSAAEVALQEL 82
>gi|357141254|ref|XP_003572154.1| PREDICTED: double-stranded RNA-binding protein 4-like
[Brachypodium distachyon]
Length = 281
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 27 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSK-KQAE 85
D YKN LQELAQ+ LPVY T++ G+ H P F STVEV G+ FS + K AE
Sbjct: 26 DKCNYKNRLQELAQRAHQKLPVYLTEKKGDHHQPEFRSTVEVWGDQFSSARTHGRIKDAE 85
Query: 86 MSAAKVAY 93
AA+VAY
Sbjct: 86 QDAARVAY 93
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 25 EDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFSGQGAKSKKQ 83
+ D + K++L E A K P Y+ + G S FVS+V G+ ++G+ A SKK
Sbjct: 115 DQDVLFCKSILNEFAVKTKATQPKYSVDRPQGVSPISLFVSSVVFDGKTYTGEAAVSKKD 174
Query: 84 AEMSAAKVA 92
AE AA+ A
Sbjct: 175 AEQKAARAA 183
>gi|218186287|gb|EEC68714.1| hypothetical protein OsI_37196 [Oryza sativa Indica Group]
Length = 2010
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
L KN+LQE AQK YA+P Y +S AP F+ TVE+GG + G A++KK AE+ AA
Sbjct: 1704 LCKNLLQEYAQKMNYAIPSYICTKSASGLAP-FICTVEIGGIQYIGAAARTKKDAEIKAA 1762
Query: 90 KVAYMRLK 97
+ A + ++
Sbjct: 1763 RTALLAIQ 1770
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 9/116 (7%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQA 84
++ ++K+ LQE AQK P Y+T + G SH P F STV + + S G ++K A
Sbjct: 1264 ENCYVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAA 1323
Query: 85 EMSAAKVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNVT-----ADLHHNI 135
E SAA+VA M + + P+ P +Q ++ S Q N+ AD HH++
Sbjct: 1324 EQSAAEVALMEIVKSIPANANI---PAVQETGLCNTGSQQLNLREMHREADHHHHL 1376
>gi|50511729|gb|AAT77417.1| dsRNA-binding protein LH2 [Brassica oleracea var. capitata]
Length = 278
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGE-SHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
L KN+LQE AQK YA+P+Y ++S AP F TVE+GG ++G K+K++AE+SA
Sbjct: 101 LCKNLLQEYAQKMNYAIPLYQCQKSETLGRAPQFTCTVEIGGIKYTGAATKTKREAEISA 160
Query: 89 AKVAYMRLK 97
+ A + ++
Sbjct: 161 GRTALIAIQ 169
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 27 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAE 85
+ ++K+ LQE AQK P+Y T + G SH F STV V G + S G ++K AE
Sbjct: 12 NCYVFKSRLQEYAQKYKLPTPIYETVKEGPSHKSLFQSTVIVDGVRYDSLPGFFNRKAAE 71
Query: 86 MSAAKVAYMRL 96
SAA+VA L
Sbjct: 72 QSAAEVALQEL 82
>gi|50511733|gb|AAT77419.1| dsRNA-binding protein LH2-o [Brassica napus]
Length = 277
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGE-SHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
L KN+LQE AQK YA+P+Y ++S AP F TVE+GG ++G K+K++AE+SA
Sbjct: 101 LCKNLLQEYAQKMNYAIPLYQCQKSETLGRAPQFTCTVEIGGIKYTGAATKTKREAEISA 160
Query: 89 AKVAYMRLK 97
+ A + ++
Sbjct: 161 GRTALIAIQ 169
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 27 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAE 85
+ ++K+ LQE AQK P+Y T + G SH F STV V G + S G ++K AE
Sbjct: 12 NCYVFKSRLQEYAQKYKLPTPIYETVKEGPSHKSLFQSTVIVDGVRYDSLPGFFNRKAAE 71
Query: 86 MSAAKVAYMRL 96
SAA+VA L
Sbjct: 72 QSAAEVALQEL 82
>gi|222615377|gb|EEE51509.1| hypothetical protein OsJ_32675 [Oryza sativa Japonica Group]
Length = 830
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
L KN+LQE AQK YA+P Y +S AP F+ TVE+GG + G A++KK AE+ AA
Sbjct: 475 LCKNLLQEYAQKMNYAIPSYICTKSASGLAP-FICTVEIGGIQYIGAAARTKKDAEIKAA 533
Query: 90 KVAYMRLK 97
+ A + ++
Sbjct: 534 RTALLAIQ 541
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 9/119 (7%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQA 84
++ ++K+ LQE AQK P Y+T + G SH P F STV + + S G ++K A
Sbjct: 29 ENCYVFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAA 88
Query: 85 EMSAAKVAYMRLKEPNPSQG--PALVSPDIQAQADYSSS-SLQSNV-----TADLHHNI 135
E SAA+VA M + + P+ PA+ Q + ++ S Q N+ AD HH +
Sbjct: 89 EQSAAEVALMEIVKSIPANANIPAVAHNSTQQETGLCNTGSQQLNLREMHREADHHHRL 147
>gi|27262833|emb|CAD59425.1| dsRNA-binding protein [Brassica oleracea var. botrytis]
Length = 283
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGE-SHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
L KN+LQE AQK YA+P+Y ++S AP F TVE+GG ++G K+KK+AE+S+
Sbjct: 101 LCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAEISS 160
Query: 89 AKVAYMRLK 97
+ A + ++
Sbjct: 161 GRTALIAIQ 169
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 27 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAE 85
+ ++K+ LQE AQ+ P+Y T + G SH P F STV V + S G ++K AE
Sbjct: 12 NCYVFKSRLQEYAQRYKLPTPLYETIKEGPSHKPLFQSTVIVNYVRYDSLPGFFNRKAAE 71
Query: 86 MSAAKVAYMRL 96
SAA+VA L
Sbjct: 72 QSAAEVALQGL 82
>gi|222616496|gb|EEE52628.1| hypothetical protein OsJ_34969 [Oryza sativa Japonica Group]
Length = 781
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
L KN+LQE AQK YA+P Y +S AP F+ TVE+GG + G A++KK AE+ AA
Sbjct: 475 LCKNLLQEYAQKMNYAIPSYICTKSASGLAP-FICTVEIGGIQYIGAAARTKKDAEIKAA 533
Query: 90 KVAYMRLK 97
+ A + ++
Sbjct: 534 RTALLAIQ 541
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 9/119 (7%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQA 84
++ ++K+ LQE AQK P Y+T + G SH P F STV + + S G ++K A
Sbjct: 29 ENCYVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAA 88
Query: 85 EMSAAKVAYMRLKEPNPSQG--PALVSPDIQAQADYSSS-SLQSNV-----TADLHHNI 135
E SAA+VA M + + P+ PA+V Q + ++ S Q N+ AD HH++
Sbjct: 89 EQSAAEVALMEIVKSIPANANIPAVVHNSTQQETGLCNTGSQQLNLREMHREADHHHHL 147
>gi|50511727|gb|AAT77416.1| dsRNA-binding protein LH1 [Brassica oleracea var. capitata]
Length = 283
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGE-SHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
L KN+LQE QK YA+P+Y ++S AP F TVE+GG ++G K+KK+AE+SA
Sbjct: 101 LCKNLLQEYTQKMNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAEISA 160
Query: 89 AKVAYMRLK 97
+ A + ++
Sbjct: 161 GRTALIAIQ 169
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 27 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAE 85
+ ++K+ LQE AQ+ P+Y T + G SH P F STV V + S G ++K AE
Sbjct: 12 NCYVFKSRLQEYAQRYKLPTPLYETIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAE 71
Query: 86 MSAAKVAYMRL 96
SAA+VA L
Sbjct: 72 QSAAEVALQEL 82
>gi|357155520|ref|XP_003577147.1| PREDICTED: double-stranded RNA-binding protein 8-like [Brachypodium
distachyon]
Length = 447
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
L KN+LQE AQK YA+P Y + + AP F+STVE+GG + G A++KK+AE+ AA
Sbjct: 100 LCKNLLQEYAQKMNYAIPSYISHRQASGVAP-FISTVEIGGIQYIGAAARTKKEAEIKAA 158
Query: 90 KVAYMRLK 97
+ A + ++
Sbjct: 159 RTALLAIQ 166
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQA 84
++ ++K+ LQE AQK P Y T + G SH P F S V V G + S G S+K A
Sbjct: 9 ENCYVFKSRLQEYAQKAGLPTPEYQTLKEGPSHEPVFKSAVLVDGVSYDSLPGFFSRKAA 68
Query: 85 EMSAAKVAYMRL 96
E SAA+VA M +
Sbjct: 69 EQSAAEVALMEI 80
>gi|357465225|ref|XP_003602894.1| DsRNA-binding protein [Medicago truncatula]
gi|355491942|gb|AES73145.1| DsRNA-binding protein [Medicago truncatula]
Length = 780
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 61/102 (59%), Gaps = 3/102 (2%)
Query: 5 QIELLRSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQSGE--SHAPTF 62
++ L+ + +++ T ++ L KN+LQE AQK YA+P+Y +K+ AP +
Sbjct: 77 EVALMELAKTGEVNQSITQPVHETGLCKNLLQEYAQKMNYAMPLYQSKKDDTPPGRAPLY 136
Query: 63 VSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQG 104
TV++GG ++ G AK+K++AE+ AA+ A + + + N SQ
Sbjct: 137 SCTVDIGGMLYIGGTAKTKREAEIKAARTALLAI-QTNASQA 177
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 20 MFTNQED-----DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF- 73
M T ED + ++K+ LQE AQK PVY T + G SH P+F STV + +
Sbjct: 1 MSTTNEDFQGVSNCYVFKSQLQEYAQKAGLGTPVYETTKEGPSHEPSFRSTVIMNDVRYD 60
Query: 74 SGQGAKSKKQAEMSAAKVAYMRL 96
S G ++K AE SAA+VA M L
Sbjct: 61 SLAGFFNRKAAEQSAAEVALMEL 83
>gi|115483791|ref|NP_001065557.1| Os11g0109900 [Oryza sativa Japonica Group]
gi|122221791|sp|Q0IV63.1|DRB7_ORYSJ RecName: Full=Double-stranded RNA-binding protein 7; AltName:
Full=dsRNA-binding protein 7
gi|108863922|gb|ABG22335.1| Double-stranded RNA binding motif family protein, expressed [Oryza
sativa Japonica Group]
gi|113644261|dbj|BAF27402.1| Os11g0109900 [Oryza sativa Japonica Group]
gi|215686684|dbj|BAG88937.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768461|dbj|BAH00690.1| unnamed protein product [Oryza sativa Japonica Group]
gi|387538567|gb|AFJ79552.1| double stranded RNA binding protein 1-2 [Oryza sativa Indica Group]
Length = 473
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
L KN+LQE AQK YA+P Y +S AP F+ TVE+GG + G A++KK AE+ AA
Sbjct: 118 LCKNLLQEYAQKMNYAIPSYICTKSASGLAP-FICTVEIGGIQYIGAAARTKKDAEIKAA 176
Query: 90 KVAYMRLK 97
+ A + ++
Sbjct: 177 RTALLAIQ 184
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQA 84
++ ++K+ LQE AQK P Y+T + G SH P F STV + + S G ++K A
Sbjct: 29 ENCYVFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAA 88
Query: 85 EMSAAKVAYMRL 96
E SAA+VA M +
Sbjct: 89 EQSAAEVALMEI 100
>gi|115486946|ref|NP_001065960.1| Os12g0109900 [Oryza sativa Japonica Group]
gi|122234185|sp|Q0IQN6.1|DRB8_ORYSJ RecName: Full=Double-stranded RNA-binding protein 8; AltName:
Full=dsRNA-binding protein 1; Short=OsDRB1; AltName:
Full=dsRNA-binding protein 8
gi|108862090|gb|ABG21849.1| Double-stranded RNA binding motif family protein, expressed [Oryza
sativa Japonica Group]
gi|113648467|dbj|BAF28979.1| Os12g0109900 [Oryza sativa Japonica Group]
Length = 424
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
L KN+LQE AQK YA+P Y +S AP F+ TVE+GG + G A++KK AE+ AA
Sbjct: 118 LCKNLLQEYAQKMNYAIPSYICTKSASGLAP-FICTVEIGGIQYIGAAARTKKDAEIKAA 176
Query: 90 KVAYMRLK 97
+ A + ++
Sbjct: 177 RTALLAIQ 184
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQA 84
++ ++K+ LQE AQK P Y+T + G SH P F STV + + S G ++K A
Sbjct: 29 ENCYVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAA 88
Query: 85 EMSAAKVAYMRL 96
E SAA+VA M +
Sbjct: 89 EQSAAEVALMEI 100
>gi|62912408|gb|AAY21792.1| dsRNA binding protein RBP [Oryza sativa Japonica Group]
Length = 410
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
L KN+LQE AQK YA+P Y +S AP F+ TVE+GG + G A++KK AE+ AA
Sbjct: 118 LCKNLLQEYAQKMNYAIPSYICTKSASGLAP-FICTVEIGGIQYIGAAARTKKDAEIKAA 176
Query: 90 KVAYMRLK 97
+ A + ++
Sbjct: 177 RTALLAIQ 184
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQA 84
++ ++K+ LQE AQK P Y+T + G SH P F STV + + S G ++K A
Sbjct: 29 ENCYVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAA 88
Query: 85 EMSAAKVAYMRL 96
E SAA+VA M +
Sbjct: 89 EQSAAEVALMEI 100
>gi|212276238|ref|NP_001130203.1| uncharacterized protein LOC100191297 [Zea mays]
gi|194688536|gb|ACF78352.1| unknown [Zea mays]
gi|414870581|tpg|DAA49138.1| TPA: hypothetical protein ZEAMMB73_523306 [Zea mays]
Length = 323
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 27 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKS-KKQAE 85
D ++KN LQ A++ P+Y + G+SH P F TVEVG + FS G+ S KK+AE
Sbjct: 55 DKYMHKNRLQSFAERTYKKTPIYKVESEGQSHQPKFTCTVEVGDQQFSSTGSFSRKKEAE 114
Query: 86 MSAAKVAY 93
AA+VAY
Sbjct: 115 QDAARVAY 122
Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 7 ELLRSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPT-FVST 65
E+L ++ S + F + D+V K++L E A K LP Y+ T F +
Sbjct: 123 EILTTVSESDVKEAFELIDQDAVFCKSILIEFAVKTKTTLPSYSVVCVCLKKPLTLFAAI 182
Query: 66 VEVGGEVFSGQGAKSKKQAEMSAAKV 91
V G + G+ A +KK AE +AA+V
Sbjct: 183 VVFDGNAYHGESAPNKKDAEQNAARV 208
>gi|326510101|dbj|BAJ87267.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 304
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 15 SQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF- 73
S L Q + + YK+ LQ AQK LP Y+T ++G HAP F STV + G F
Sbjct: 98 SALPPPPPPQSETQLPYKSQLQVYAQKRHKDLPSYDTIRNGPPHAPLFRSTVTIDGRTFE 157
Query: 74 SGQGAKSKKQAEMSAAKVAYMRL-KEPNPSQ 103
S Q + K+AE +AA+VA M L +E NPS+
Sbjct: 158 SPQDYHTTKEAEFAAARVALMSLSQEANPSE 188
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSAA 89
+K LQ AQK LP Y Q G SHAP F STV + G+ F S Q ++ K++E +AA
Sbjct: 207 HKLQLQIYAQKRGKQLPKYRRTQEGPSHAPLFKSTVTIDGQTFESPQYCQTIKESENAAA 266
Query: 90 KVAYMRLKEPNPSQGP 105
+A M L + S P
Sbjct: 267 NLALMSLTQEGHSSKP 282
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 25 EDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF----SGQGAKS 80
+ + ++K L +L Q+ + P Y + G +H F +TV V GEV+ G G+ +
Sbjct: 22 QSSAAMFKAQLNQLCQQRRWPAPDYAHRSEGPAHLLRFRATVAVNGEVYHSPDDGGGSGT 81
Query: 81 KKQAEMSAAKVAYMRL 96
K+A AAK A+ RL
Sbjct: 82 AKEAHNLAAKAAFERL 97
>gi|414588756|tpg|DAA39327.1| TPA: bcpLH protein [Zea mays]
Length = 1158
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
L KN+LQE AQK YA+P Y + AP FV +VE+GG ++ G A++KK+AE+ AA
Sbjct: 848 LCKNLLQEYAQKMNYAIPSYICTKQASGVAP-FVCSVEIGGILYIGAAARTKKEAEIKAA 906
Query: 90 KVAYMRLK 97
+ A + ++
Sbjct: 907 RTALLAIQ 914
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQA 84
++ ++K+ LQE AQ+ P Y+T + G SH P F STV V + S G S+K A
Sbjct: 757 ENCYVFKSRLQEYAQRVGIPTPEYHTLKEGPSHEPVFKSTVFVNNTKYESLPGFFSRKAA 816
Query: 85 EMSAAKVAYMRL 96
E SAA+VA M +
Sbjct: 817 EQSAAEVALMEI 828
>gi|356510122|ref|XP_003523789.1| PREDICTED: double-stranded RNA-binding protein 1-like [Glycine max]
Length = 359
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 5 QIELLRSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQSGE-SHAPTFV 63
++ L+ ++ + ++ T ++ L KN+LQE AQK YA+P+Y K+ A F
Sbjct: 76 EVALVELVKSNAVNQSITQPVHETGLCKNLLQEYAQKMNYAMPMYQCKKDETPGRASVFS 135
Query: 64 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 97
TV++GG ++ G AK+KK+AE+ AA+ A + ++
Sbjct: 136 CTVDIGGILYIGGAAKTKKEAEIKAARTALLAIQ 169
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 50/86 (58%), Gaps = 5/86 (5%)
Query: 20 MFTNQEDDSV----LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-S 74
M TN++ SV ++K+ LQE AQK PVY T + G SH P+F STV V + S
Sbjct: 1 MPTNEDFQSVSNCYVFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDS 60
Query: 75 GQGAKSKKQAEMSAAKVAYMRLKEPN 100
G ++K AE SAA+VA + L + N
Sbjct: 61 LPGFFNRKAAEQSAAEVALVELVKSN 86
>gi|356515734|ref|XP_003526553.1| PREDICTED: double-stranded RNA-binding protein 1-like [Glycine max]
Length = 359
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 5 QIELLRSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQSGE-SHAPTFV 63
++ L+ ++ + ++ T ++ L KN+LQE AQK YA+P+Y K+ A F
Sbjct: 76 EVALVELIKSNLVNQSITQPVHETGLCKNLLQEYAQKMNYAMPMYQCKKDETPGRASVFS 135
Query: 64 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 97
TV++GG ++ G AK+KK+AE+ AA+ A + ++
Sbjct: 136 CTVDIGGILYIGGAAKTKKEAEIKAARTALLAIQ 169
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 50/86 (58%), Gaps = 5/86 (5%)
Query: 20 MFTNQEDDSV----LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-S 74
M TN++ SV ++K+ LQE AQK PVY T + G SH P+F STV V + S
Sbjct: 1 MPTNEDFQSVSNCYVFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDS 60
Query: 75 GQGAKSKKQAEMSAAKVAYMRLKEPN 100
G ++K AE SAA+VA + L + N
Sbjct: 61 LPGFFNRKAAEQSAAEVALVELIKSN 86
>gi|255637537|gb|ACU19095.1| unknown [Glycine max]
Length = 359
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 5 QIELLRSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQSGE-SHAPTFV 63
++ L+ ++ + ++ T ++ L KN+LQE AQK YA+P+Y K+ A F
Sbjct: 76 EVALVELIKSNLVNQSITQPVHETGLCKNLLQEYAQKMNYAMPMYQCKKDETPGRASVFS 135
Query: 64 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 97
TV++GG ++ G AK+KK+AE+ AA+ A + ++
Sbjct: 136 CTVDIGGILYIGGAAKTKKEAEIKAARTALLAIQ 169
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 50/86 (58%), Gaps = 5/86 (5%)
Query: 20 MFTNQEDDSV----LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-S 74
M TN++ SV ++K+ LQE AQK PVY T + G SH P+F STV V + S
Sbjct: 1 MPTNEDFQSVSNCYVFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDS 60
Query: 75 GQGAKSKKQAEMSAAKVAYMRLKEPN 100
G ++K AE SAA+VA + L + N
Sbjct: 61 LPGFFNRKAAEQSAAEVALVELIKSN 86
>gi|125551761|gb|EAY97470.1| hypothetical protein OsI_19399 [Oryza sativa Indica Group]
Length = 787
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
L KN+LQE AQK YA+P Y + AP F+ TVE+GG + G A++KK AE+ AA
Sbjct: 470 LCKNLLQEYAQKMNYAIPSYICTKPASGLAP-FICTVEIGGIQYIGAAARTKKDAEIKAA 528
Query: 90 KVAYMRLK 97
+ A + ++
Sbjct: 529 RTALLAIQ 536
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQA 84
++ ++K+ LQE AQK P Y+T + G SH P F STV + + S G ++K A
Sbjct: 31 ENCYVFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAA 90
Query: 85 EMSAAKVAYMRLKEPNPS 102
E SAA+VA M + + P+
Sbjct: 91 EQSAAEVALMEIVKSIPA 108
>gi|449511425|ref|XP_004163953.1| PREDICTED: double-stranded RNA-binding protein 1-like [Cucumis
sativus]
Length = 351
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 5 QIELLRSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFV 63
++ L+ + S L+ + ++ L KN+LQE AQK +A+P+Y K G F
Sbjct: 76 EVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIPLYQCQKDDGPGRGSLFS 135
Query: 64 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE-PN 100
TVE+GG + G AK+KK+AE+ AA+ A + ++ PN
Sbjct: 136 CTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPN 173
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 27 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAE 85
+ ++K+ LQE AQK PVY T + G SH PTF STV V + S G ++K AE
Sbjct: 12 NCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAE 71
Query: 86 MSAAKVAYMRL 96
SAA+VA M L
Sbjct: 72 QSAAEVALMEL 82
>gi|449470070|ref|XP_004152741.1| PREDICTED: double-stranded RNA-binding protein 1-like [Cucumis
sativus]
Length = 344
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 5 QIELLRSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFV 63
++ L+ + S L+ + ++ L KN+LQE AQK +A+P+Y K G F
Sbjct: 69 EVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIPLYQCQKDDGPGRGSLFS 128
Query: 64 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE-PN 100
TVE+GG + G AK+KK+AE+ AA+ A + ++ PN
Sbjct: 129 CTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPN 166
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 27 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAE 85
+ ++K+ LQE AQK PVY T + G SH PTF STV V + S G ++K AE
Sbjct: 5 NCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAE 64
Query: 86 MSAAKVAYMRL 96
SAA+VA M L
Sbjct: 65 QSAAEVALMEL 75
>gi|226506372|ref|NP_001150455.1| LOC100284085 [Zea mays]
gi|195639400|gb|ACG39168.1| bcpLH protein [Zea mays]
Length = 434
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 6 IELLRSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVST 65
+E+ S +++ M QE + L KN+LQE AQK YA+P Y + AP FV +
Sbjct: 102 MEIAMSAPVTEIRNMPAVQE--TGLCKNLLQEYAQKMNYAIPSYICTKQASGVAP-FVCS 158
Query: 66 VEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 97
VE+GG ++ G A++KK+AE+ AA+ A + ++
Sbjct: 159 VEIGGILYIGAAARTKKEAEIKAARTALLAIQ 190
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQA 84
++ ++K+ LQE AQ+ P Y+T + G SH P F STV V + S G S+K A
Sbjct: 33 ENCYVFKSRLQEYAQRVGIPTPEYHTLKEGPSHEPVFKSTVFVNNTKYESLPGFFSRKAA 92
Query: 85 EMSAAKVAYMRL 96
E SAA+VA M +
Sbjct: 93 EQSAAEVALMEI 104
>gi|242084480|ref|XP_002442665.1| hypothetical protein SORBIDRAFT_08g000900 [Sorghum bicolor]
gi|241943358|gb|EES16503.1| hypothetical protein SORBIDRAFT_08g000900 [Sorghum bicolor]
Length = 394
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 27 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 86
++ L KN+LQE AQK YA+P Y + AP F+ TVE+GG + G A++KK+AE+
Sbjct: 121 ETGLCKNLLQEYAQKMNYAIPSYICTKQASGVAP-FICTVEIGGIQYIGAAARTKKEAEI 179
Query: 87 SAAKVAYMRLK 97
AA+ A + ++
Sbjct: 180 KAARTALLAIQ 190
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQA 84
++ ++K+ LQE AQK P Y+T + G SH P F STV V + S G S+K A
Sbjct: 33 ENCYVFKSRLQEYAQKAGLPTPEYHTLKEGPSHEPVFKSTVLVNNTTYESLPGFFSRKAA 92
Query: 85 EMSAAKVAYMRL 96
E SAA+VA M +
Sbjct: 93 EQSAAEVALMEI 104
>gi|194691820|gb|ACF79994.1| unknown [Zea mays]
gi|414870583|tpg|DAA49140.1| TPA: hypothetical protein ZEAMMB73_523306 [Zea mays]
gi|414870584|tpg|DAA49141.1| TPA: hypothetical protein ZEAMMB73_523306 [Zea mays]
Length = 266
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKS-KKQAEMSA 88
++KN LQ A++ P+Y + G+SH P F TVEVG + FS G+ S KK+AE A
Sbjct: 1 MHKNRLQSFAERTYKKTPIYKVESEGQSHQPKFTCTVEVGDQQFSSTGSFSRKKEAEQDA 60
Query: 89 AKVAY 93
A+VAY
Sbjct: 61 ARVAY 65
Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 7 ELLRSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPT-FVST 65
E+L ++ S + F + D+V K++L E A K LP Y+ T F +
Sbjct: 66 EILTTVSESDVKEAFELIDQDAVFCKSILIEFAVKTKTTLPSYSVVCVCLKKPLTLFAAI 125
Query: 66 VEVGGEVFSGQGAKSKKQAEMSAAKV 91
V G + G+ A +KK AE +AA+V
Sbjct: 126 VVFDGNAYHGESAPNKKDAEQNAARV 151
>gi|242081359|ref|XP_002445448.1| hypothetical protein SORBIDRAFT_07g019380 [Sorghum bicolor]
gi|241941798|gb|EES14943.1| hypothetical protein SORBIDRAFT_07g019380 [Sorghum bicolor]
Length = 298
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 27 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGA-KSKKQAE 85
D ++KN LQ A++ PVY + G SH P F TVEVGG+ FS G+ KK+AE
Sbjct: 44 DKYMHKNRLQSFAERTYKKPPVYKVESEGASHQPKFRCTVEVGGQQFSSAGSFDRKKEAE 103
Query: 86 MSAAKVAY 93
AA++AY
Sbjct: 104 QDAARIAY 111
Score = 37.0 bits (84), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 7 ELLRSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTV 66
E+L ++ + F + D+V K++L E A K P Y+ E F + V
Sbjct: 112 EILSAVGEDDIKEAFGLIDQDAVFCKSILNEFAVKTKTTWPSYSLVYI-EKPLTLFAAIV 170
Query: 67 EVGGEVFSGQGAKSKKQAEMSAAK 90
G ++G+ A++KK AE +AA+
Sbjct: 171 VFDGNSYTGESARNKKDAEQNAAR 194
>gi|222631053|gb|EEE63185.1| hypothetical protein OsJ_17994 [Oryza sativa Japonica Group]
Length = 787
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
L KN+LQE AQK YA+P Y + AP F+ TVE+GG + G A++KK AE+ AA
Sbjct: 470 LCKNLLQEYAQKMNYAIPSYICTKPASGLAP-FLCTVEIGGIQYIGAAARTKKDAEIKAA 528
Query: 90 KVAYMRLK 97
+ A + ++
Sbjct: 529 RTALLAIQ 536
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQA 84
++ ++K+ LQE AQK P Y+T + G SH P F STV + + S G ++K A
Sbjct: 31 ENCYVFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAA 90
Query: 85 EMSAAKVAYMRLKEPNPSQG--PALVSPDIQAQADYSSSSLQSNVTADLHHNI 135
E SAA+VA M + + P+ PA+ + + + + AD HH +
Sbjct: 91 EQSAAEVALMEIVKSIPANANIPAVQETGLCNIGSQQLNQREMHREADHHHCL 143
>gi|387538561|gb|AFJ79549.1| double stranded RNA binding protein 1-1 [Oryza sativa Indica Group]
Length = 377
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
L KN+LQE AQK YA+P Y + AP F+ TVE+GG + G A++KK AE+ AA
Sbjct: 120 LCKNLLQEYAQKMNYAIPSYICTKPASGLAP-FICTVEIGGIQYIGAAARTKKDAEIKAA 178
Query: 90 KVAYMRLK 97
+ A + ++
Sbjct: 179 RTALLAIQ 186
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQA 84
++ ++K+ LQE AQK P Y+T + G SH P F STV + + S G ++K A
Sbjct: 31 ENCYVFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAA 90
Query: 85 EMSAAKVAYMRL 96
E SAA+VA M +
Sbjct: 91 EQSAAEVALMEI 102
>gi|297849274|ref|XP_002892518.1| hypothetical protein ARALYDRAFT_471071 [Arabidopsis lyrata subsp.
lyrata]
gi|297338360|gb|EFH68777.1| hypothetical protein ARALYDRAFT_471071 [Arabidopsis lyrata subsp.
lyrata]
Length = 376
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 15 SQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVF 73
S+LS + ++ L KN+LQE AQK YA+P+Y ++ A F TVE+GG +
Sbjct: 86 SELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQRIETLGRATQFTCTVEIGGIKY 145
Query: 74 SGQGAKSKKQAEMSAAKVAYMRLK 97
+G ++KK AE+SA + A + ++
Sbjct: 146 TGAATRTKKDAEISAGRTALLAIQ 169
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 27 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAE 85
+ ++K+ LQE AQK PVY T + G SH F STV + G + S G ++K AE
Sbjct: 12 NCYVFKSRLQEYAQKYKLQTPVYETVKEGPSHKSFFQSTVILNGVRYNSLPGFFNRKAAE 71
Query: 86 MSAAKVAYMRL 96
SAA+VA L
Sbjct: 72 QSAAEVALQEL 82
>gi|115463113|ref|NP_001055156.1| Os05g0307400 [Oryza sativa Japonica Group]
gi|122169278|sp|Q0DJA3.1|DRB3_ORYSJ RecName: Full=Double-stranded RNA-binding protein 3; AltName:
Full=dsRNA-binding protein 3
gi|113578707|dbj|BAF17070.1| Os05g0307400 [Oryza sativa Japonica Group]
gi|215704133|dbj|BAG92973.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 437
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
L KN+LQE AQK YA+P Y + AP F+ TVE+GG + G A++KK AE+ AA
Sbjct: 120 LCKNLLQEYAQKMNYAIPSYICTKPASGLAP-FLCTVEIGGIQYIGAAARTKKDAEIKAA 178
Query: 90 KVAYMRLK 97
+ A + ++
Sbjct: 179 RTALLAIQ 186
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQA 84
++ ++K+ LQE AQK P Y+T + G SH P F STV + + S G ++K A
Sbjct: 31 ENCYVFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAA 90
Query: 85 EMSAAKVAYMRL 96
E SAA+VA M +
Sbjct: 91 EQSAAEVALMEI 102
>gi|18391056|ref|NP_563850.1| dsRNA-binding hyponastic leave 1 protein [Arabidopsis thaliana]
gi|75218980|sp|O04492.1|DRB1_ARATH RecName: Full=Double-stranded RNA-binding protein 1; AltName:
Full=Protein HYPONASTIC LEAVES 1; AltName:
Full=dsRNA-binding protein 1; Short=AtDRB1
gi|12247457|gb|AAG49890.1|AF276440_1 hyponastic leave 1 [Arabidopsis thaliana]
gi|2160163|gb|AAB60726.1| F21M12.9 gene product [Arabidopsis thaliana]
gi|15451102|gb|AAK96822.1| Unknown protein [Arabidopsis thaliana]
gi|20148393|gb|AAM10087.1| unknown protein [Arabidopsis thaliana]
gi|332190360|gb|AEE28481.1| dsRNA-binding hyponastic leave 1 protein [Arabidopsis thaliana]
Length = 419
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 9 LRSMQRS-QLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTV 66
LR + +S +LS + ++ L KN+LQE AQK YA+P+Y K F TV
Sbjct: 79 LRELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTV 138
Query: 67 EVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 97
E+GG ++G ++KK AE+SA + A + ++
Sbjct: 139 EIGGIKYTGAATRTKKDAEISAGRTALLAIQ 169
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 27 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAE 85
+ ++K+ LQE AQK PVY + G SH F STV + G + S G ++K AE
Sbjct: 12 NCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAE 71
Query: 86 MSAAKVAYMRL 96
SAA+VA L
Sbjct: 72 QSAAEVALREL 82
>gi|302142076|emb|CBI19279.3| unnamed protein product [Vitis vinifera]
Length = 415
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
L KN+LQE AQK YA+P+Y K A +F TVE+GG + G A++KK+AE+ A
Sbjct: 101 LCKNLLQEYAQKMNYAIPMYVCQKDESPGRAASFSCTVEIGGIRYIGAAARTKKEAEIKA 160
Query: 89 AKVAYMRLK 97
A+ A + ++
Sbjct: 161 ARTALLAIR 169
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
++K+ LQE AQK P+Y+T + G H P+F STV V + S G ++K AE SA
Sbjct: 15 VFKSRLQEYAQKVGLPTPLYDTIKEGPPHVPSFKSTVIVNDVRYDSLPGFSNRKAAEQSA 74
Query: 89 AKVAYMRL 96
A+VA + L
Sbjct: 75 AEVALVEL 82
>gi|225459069|ref|XP_002285663.1| PREDICTED: double-stranded RNA-binding protein 1 [Vitis vinifera]
gi|147781065|emb|CAN68128.1| hypothetical protein VITISV_043706 [Vitis vinifera]
Length = 400
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
L KN+LQE AQK YA+P+Y K A +F TVE+GG + G A++KK+AE+ A
Sbjct: 101 LCKNLLQEYAQKMNYAIPMYVCQKDESPGRAASFSCTVEIGGIRYIGAAARTKKEAEIKA 160
Query: 89 AKVAYMRLK 97
A+ A + ++
Sbjct: 161 ARTALLAIR 169
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
++K+ LQE AQK P+Y+T + G H P+F STV V + S G ++K AE SA
Sbjct: 15 VFKSRLQEYAQKVGLPTPLYDTIKEGPPHVPSFKSTVIVNDVRYDSLPGFSNRKAAEQSA 74
Query: 89 AKVAYMRL 96
A+VA + L
Sbjct: 75 AEVALVEL 82
>gi|356569838|ref|XP_003553102.1| PREDICTED: caltractin-like [Glycine max]
Length = 265
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 34/46 (73%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
Q+G H PTF STVEV G F G+G +SKKQ+E +A K+AY+ LKE
Sbjct: 2 QAGSPHMPTFFSTVEVEGVEFHGKGGRSKKQSEENATKIAYIALKE 47
>gi|356577458|ref|XP_003556842.1| PREDICTED: probable sugar phosphate/phosphate translocator
At5g05820-like [Glycine max]
Length = 293
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YKN LQELAQ+ + LP Y + Q G HAP F + V G++F + + +QAE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTSLQEGPDHAPRFKAIVNFNGKIFKTPHYCSTLRQAEHSA 60
Query: 89 AKVAYMRLKEPNPSQGPA 106
A+V L PS A
Sbjct: 61 AEVTLNSLTHRGPSHSLA 78
>gi|224129272|ref|XP_002328933.1| predicted protein [Populus trichocarpa]
gi|222839363|gb|EEE77700.1| predicted protein [Populus trichocarpa]
Length = 133
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
++KN LQELAQ+ + LP Y + G HAP F ++V GE+F S + +QAE +A
Sbjct: 1 MFKNQLQELAQRSCFNLPAYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
Query: 89 AKVAYMRLKEPNPSQGPA 106
A+VA L S+GPA
Sbjct: 61 AEVALNVLS----SRGPA 74
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 25 EDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFS 74
+D++ +YKN+LQE A + LP Y T +SG H P F TVE+ G F+
Sbjct: 84 KDETGIYKNLLQETAHRAGLNLPAYTTVRSGPGHVPVFTCTVELAGMNFT 133
>gi|449489595|ref|XP_004158359.1| PREDICTED: putative syntaxin-131-like [Cucumis sativus]
Length = 307
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
++K LQEL +++Y LP Y+ + G+ H P F +TV V G+ F S +KS KQA+ A
Sbjct: 1 MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDA 60
Query: 89 AKVAYMRLKEPNPSQGPALVSP 110
AK+A+ P+ Q P + P
Sbjct: 61 AKLAFDFFSLPSLPQPPEQLCP 82
>gi|227206366|dbj|BAH57238.1| AT1G09700 [Arabidopsis thaliana]
Length = 403
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 15 SQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVF 73
++LS + ++ L KN+LQE AQK YA+P+Y K F TVE+GG +
Sbjct: 70 AELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKY 129
Query: 74 SGQGAKSKKQAEMSAAKVAYMRLK 97
+G ++KK AE+SA + A + ++
Sbjct: 130 TGAATRTKKDAEISAGRTALLAIQ 153
>gi|255545990|ref|XP_002514055.1| conserved hypothetical protein [Ricinus communis]
gi|223547141|gb|EEF48638.1| conserved hypothetical protein [Ricinus communis]
Length = 361
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 30 LYKNVLQELAQKEAYALPVY-NTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
L KN+LQE AQK YA+P+Y K F TVE+GG + G AK+KK+AE+ A
Sbjct: 102 LCKNLLQEYAQKMNYAIPLYLCQKNESPGRGTLFKCTVEIGGIHYIGASAKTKKEAEIKA 161
Query: 89 AKVAYMRLK 97
A+ A + ++
Sbjct: 162 ARTALLAIQ 170
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 27 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAE 85
+ ++K+ LQE AQK+ PVY T + G SH P+F STV V + S G ++K AE
Sbjct: 13 NCYVFKSRLQEYAQKKGLPTPVYETIKEGPSHEPSFRSTVIVNDIRYDSLPGFFNRKAAE 72
Query: 86 MSAAKVAYMRL 96
SAA+VA M L
Sbjct: 73 QSAAEVALMEL 83
>gi|325971140|ref|YP_004247331.1| ribonuclease 3 [Sphaerochaeta globus str. Buddy]
gi|324026378|gb|ADY13137.1| Ribonuclease 3 [Sphaerochaeta globus str. Buddy]
Length = 248
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 8/90 (8%)
Query: 19 MMFTNQEDDSVL-------YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGG 70
M++ Q+ +VL YK LQE QK +P Y +++G H TF V+V G
Sbjct: 157 MLYLEQQIQAVLDDDYHRDYKTSLQEYMQKRWRKVPSYTLVRKTGPEHDFTFFVEVDVNG 216
Query: 71 EVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 100
+VF +KKQAE AAK+AY +L +PN
Sbjct: 217 QVFGPASGANKKQAEQMAAKLAYDQLVKPN 246
>gi|224084552|ref|XP_002307335.1| predicted protein [Populus trichocarpa]
gi|222856784|gb|EEE94331.1| predicted protein [Populus trichocarpa]
Length = 213
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 27 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
++ L KN+LQE AQK YA+P+Y K F TVE+GG + G AK+KK+AE
Sbjct: 91 ETGLCKNLLQEYAQKMNYAIPLYECQKDETPGRGLVFKCTVEIGGIRYIGASAKTKKEAE 150
Query: 86 MSAAKVAYMRLK 97
+ AA+ A + ++
Sbjct: 151 IKAARTALLAIQ 162
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 27 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAE 85
+ ++K+ LQE AQK PVY T + G SH P+F STV V + S G ++K AE
Sbjct: 5 NCYVFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVKEVRYDSLPGFFNRKAAE 64
Query: 86 MSAAKVAYMRL 96
SAA+VA + L
Sbjct: 65 QSAAEVALVEL 75
>gi|449125768|ref|ZP_21762070.1| ribonuclease 3 [Treponema denticola OTK]
gi|448939737|gb|EMB20654.1| ribonuclease 3 [Treponema denticola OTK]
Length = 246
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 50/92 (54%), Gaps = 7/92 (7%)
Query: 6 IELLRSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVS 64
+ LL S S L F + YK++LQEL QK+ +P Y K+ SG H TF
Sbjct: 153 LRLLESTIHSVLEKKFISD------YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWF 206
Query: 65 TVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+V V G+V+ K+KK+AE S AKVAY L
Sbjct: 207 SVSVNGKVYGPLSGKTKKEAEQSVAKVAYENL 238
>gi|449130794|ref|ZP_21767013.1| ribonuclease 3 [Treponema denticola SP37]
gi|448941834|gb|EMB22734.1| ribonuclease 3 [Treponema denticola SP37]
Length = 246
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 50/92 (54%), Gaps = 7/92 (7%)
Query: 6 IELLRSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVS 64
+ LL S S L F + YK++LQEL QK+ +P Y K+ SG H TF
Sbjct: 153 LRLLESTIHSVLEKKFISD------YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWF 206
Query: 65 TVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+V V G+V+ K+KK+AE S AKVAY L
Sbjct: 207 SVSVNGKVYGPLSGKTKKEAEQSVAKVAYENL 238
>gi|449117995|ref|ZP_21754410.1| ribonuclease 3 [Treponema denticola H-22]
gi|448949886|gb|EMB30710.1| ribonuclease 3 [Treponema denticola H-22]
Length = 246
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 7/89 (7%)
Query: 6 IELLRSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVS 64
++LL S S L F + YK++LQEL QK+ +P Y K+ SG H TF
Sbjct: 153 LKLLESTIHSVLEKKFISD------YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWF 206
Query: 65 TVEVGGEVFSGQGAKSKKQAEMSAAKVAY 93
+V + G+V+ K+KK+AE S AKVAY
Sbjct: 207 SVSINGKVYGPLSGKTKKEAEQSVAKVAY 235
>gi|42526537|ref|NP_971635.1| ribonuclease III [Treponema denticola ATCC 35405]
gi|422342862|ref|ZP_16423801.1| ribonuclease 3 [Treponema denticola F0402]
gi|449103044|ref|ZP_21739791.1| ribonuclease 3 [Treponema denticola AL-2]
gi|449106930|ref|ZP_21743591.1| ribonuclease 3 [Treponema denticola ASLM]
gi|449112349|ref|ZP_21748903.1| ribonuclease 3 [Treponema denticola ATCC 33521]
gi|449115432|ref|ZP_21751896.1| ribonuclease 3 [Treponema denticola ATCC 35404]
gi|451968629|ref|ZP_21921858.1| ribonuclease 3 [Treponema denticola US-Trep]
gi|81412559|sp|Q73NX5.1|RNC_TREDE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|41816730|gb|AAS11516.1| ribonuclease III [Treponema denticola ATCC 35405]
gi|325473478|gb|EGC76673.1| ribonuclease 3 [Treponema denticola F0402]
gi|448953209|gb|EMB34004.1| ribonuclease 3 [Treponema denticola ATCC 35404]
gi|448955811|gb|EMB36575.1| ribonuclease 3 [Treponema denticola ATCC 33521]
gi|448963842|gb|EMB44517.1| ribonuclease 3 [Treponema denticola ASLM]
gi|448965846|gb|EMB46507.1| ribonuclease 3 [Treponema denticola AL-2]
gi|451702642|gb|EMD57044.1| ribonuclease 3 [Treponema denticola US-Trep]
Length = 246
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 50/92 (54%), Gaps = 7/92 (7%)
Query: 6 IELLRSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVS 64
+ LL S S L F + YK++LQEL QK+ +P Y K+ SG H TF
Sbjct: 153 LRLLESTIHSVLEKKFISD------YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWF 206
Query: 65 TVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+V + G+V+ K+KK+AE S AKVAY L
Sbjct: 207 SVSINGKVYGPLSGKTKKEAEQSVAKVAYENL 238
>gi|322378529|ref|ZP_08052977.1| ribonuclease III [Helicobacter suis HS1]
gi|321149043|gb|EFX43495.1| ribonuclease III [Helicobacter suis HS1]
Length = 216
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 2 LEKQIELLRSMQRSQLSMMFTNQEDDSVL--YKNVLQELAQKEAYALPVYNTK-QSGESH 58
LE +E+++++ + L M + N ++ YK+ LQEL Q A+P+Y K +SG H
Sbjct: 114 LESGLEIIKNLIQDLLDMAYPNLSPKTLFMDYKSALQELTQARFKAIPIYALKSESGPDH 173
Query: 59 APTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNP 101
A F + + +++ A SKKQAE A+VAY +L + P
Sbjct: 174 AKQFEMQIFILNKLYGTCKAGSKKQAEQLCAQVAYKQLSKELP 216
>gi|242069681|ref|XP_002450117.1| hypothetical protein SORBIDRAFT_05g000790 [Sorghum bicolor]
gi|241935960|gb|EES09105.1| hypothetical protein SORBIDRAFT_05g000790 [Sorghum bicolor]
Length = 292
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 48/72 (66%), Gaps = 5/72 (6%)
Query: 27 DSVLYKNVLQELAQKEAYALPVY-NTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
++ L KN+LQE AQK YA+P Y TKQ+ + F+ +VE+GG ++ G A++KK AE
Sbjct: 89 ETGLCKNLLQEYAQKMNYAIPSYICTKQA----SGPFICSVEIGGILYIGAAARTKKGAE 144
Query: 86 MSAAKVAYMRLK 97
+ AA+ A + ++
Sbjct: 145 IKAARTALLAIQ 156
>gi|224067130|ref|XP_002302370.1| predicted protein [Populus trichocarpa]
gi|222844096|gb|EEE81643.1| predicted protein [Populus trichocarpa]
Length = 355
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQA 84
+++ L KN+LQE AQK YA+P+Y K F TVE+GG + G K+KK+A
Sbjct: 97 NETGLCKNLLQEYAQKMNYAIPLYECQKDETPGRGLVFKCTVEIGGIRYIGASTKTKKEA 156
Query: 85 EMSAAKVAYMRLK 97
E+ AA+ A + ++
Sbjct: 157 EIKAARTALLAIQ 169
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 20 MFTNQEDDSV----LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-S 74
M TN+ V ++K+ LQE AQK PVY T + G SH P+F STV V + S
Sbjct: 1 MLTNEGFSGVSNCYVFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVKDVRYDS 60
Query: 75 GQGAKSKKQAEMSAAKVAYMRL 96
G ++K AE SAA+VA + L
Sbjct: 61 LPGFFNRKAAEQSAAEVALVEL 82
>gi|125603259|gb|EAZ42584.1| hypothetical protein OsJ_27148 [Oryza sativa Japonica Group]
Length = 125
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSK-KQAEMSAA 89
YK+ LQE Q+ LP+Y TK GE H F STV V GE FS + K AE AA
Sbjct: 39 YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSSTFCHRRVKDAEQDAA 98
Query: 90 KVAYMRLKE 98
KVAY L E
Sbjct: 99 KVAYDTLLE 107
>gi|322379758|ref|ZP_08054068.1| ribonuclease III [Helicobacter suis HS5]
gi|321147829|gb|EFX42419.1| ribonuclease III [Helicobacter suis HS5]
Length = 224
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 2 LEKQIELLRSMQRSQLSMMFTNQEDDSVL--YKNVLQELAQKEAYALPVYNTK-QSGESH 58
LE +E+++++ + L M + N ++ YK+ LQEL Q A+P+Y K +SG H
Sbjct: 122 LESGLEIIKNLIQDLLDMAYPNLSPKTLFMDYKSALQELTQARFKAIPIYALKSESGPDH 181
Query: 59 APTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNP 101
A F + + +++ A SKKQAE A+VAY +L + P
Sbjct: 182 AKQFEMQIFILNKLYGTCKAGSKKQAEQLCAQVAYKQLSKELP 224
>gi|449109836|ref|ZP_21746469.1| ribonuclease 3 [Treponema denticola ATCC 33520]
gi|448958289|gb|EMB39022.1| ribonuclease 3 [Treponema denticola ATCC 33520]
Length = 246
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Query: 6 IELLRSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVS 64
+ LL S S L F + YK++LQEL QK+ +P Y K+ SG H TF
Sbjct: 153 LRLLESTIHSVLEKKFISD------YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWF 206
Query: 65 TVEVGGEVFSGQGAKSKKQAEMSAAKVAY 93
+V + G+V+ K+KK+AE S AKVAY
Sbjct: 207 SVSINGKVYGPLSGKTKKEAEQSVAKVAY 235
>gi|449120559|ref|ZP_21756944.1| ribonuclease 3 [Treponema denticola H1-T]
gi|449122966|ref|ZP_21759297.1| ribonuclease 3 [Treponema denticola MYR-T]
gi|448947062|gb|EMB27912.1| ribonuclease 3 [Treponema denticola MYR-T]
gi|448947954|gb|EMB28797.1| ribonuclease 3 [Treponema denticola H1-T]
Length = 246
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Query: 6 IELLRSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVS 64
+ LL S S L F + YK++LQEL QK+ +P Y K+ SG H TF
Sbjct: 153 LRLLESTIHSVLEKKFISD------YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWF 206
Query: 65 TVEVGGEVFSGQGAKSKKQAEMSAAKVAY 93
+V + G+V+ K+KK+AE S AKVAY
Sbjct: 207 SVSINGKVYGPLSGKTKKEAEQSVAKVAY 235
>gi|357131055|ref|XP_003567159.1| PREDICTED: double-stranded RNA-binding protein 1-like [Brachypodium
distachyon]
Length = 608
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMS 87
V YK+ LQ AQK +P Y++ +SG HA F +TV + G+ F S Q + K+AE +
Sbjct: 87 VDYKSQLQIYAQKRRKDIPFYHSIRSGPPHATLFKTTVTIDGQTFESPQEYHTIKEAEFA 146
Query: 88 AAKVAYMRL-KEPNPSQ 103
AA+VA M L +E NP Q
Sbjct: 147 AARVALMSLPQEANPPQ 163
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAK----SKKQAE 85
++K+ L EL ++ +A P Y + G +H P F +TV V G F + + K+A+
Sbjct: 1 MFKSRLNELCHQQRWAPPAYTHQLEGPAHTPKFRATVVVNGSEFHSPEEEAWPTTAKEAQ 60
Query: 86 MSAAKVAYMRL 96
AAK A+ L
Sbjct: 61 SLAAKAAFEHL 71
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 87
++ + Q+LA+KE L VYN +H VE G F +KKQ+EM
Sbjct: 169 TISHNRARQDLAEKEGSPLDVYNATLDDSNHFSISKEKVETQGRSFQAGPGHTKKQSEMI 228
Query: 88 AAKVAY 93
A ++A+
Sbjct: 229 ATELAF 234
>gi|449128122|ref|ZP_21764369.1| ribonuclease 3 [Treponema denticola SP33]
gi|448941455|gb|EMB22356.1| ribonuclease 3 [Treponema denticola SP33]
Length = 246
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Query: 6 IELLRSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVS 64
+ LL S S L F + YK++LQEL QK+ +P Y K+ SG H TF
Sbjct: 153 LRLLESTINSVLEKKFISD------YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWF 206
Query: 65 TVEVGGEVFSGQGAKSKKQAEMSAAKVAY 93
+V + G+V+ K+KK+AE S AKVAY
Sbjct: 207 SVSINGKVYGPLSGKTKKEAEQSVAKVAY 235
>gi|255583419|ref|XP_002532469.1| double-stranded RNA binding protein, putative [Ricinus communis]
gi|223527827|gb|EEF29925.1| double-stranded RNA binding protein, putative [Ricinus communis]
Length = 289
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 27 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKS-KKQAE 85
+ ++YKN LQE Q+++ LP+Y T G H P F STV V GE ++ S +K+AE
Sbjct: 10 EHLMYKNRLQEYTQRQSLQLPIYQTVNEGYPHDPKFRSTVLVDGEEYTSHNTFSHRKEAE 69
Query: 86 MSAAKVAYMRLKE 98
AK+A + E
Sbjct: 70 QDVAKLALTSITE 82
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 21 FTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKS 80
FT++ D+V K++L E A K +P YNT + G P FVS+ G ++G ++
Sbjct: 93 FTHE--DTVACKSILNEYAVKMQLEMPTYNTVKQG-GLFPIFVSSSVFNGVTYNGDIGRT 149
Query: 81 KKQAEMSAAKVAYMRL 96
KK+AE AA+ A + L
Sbjct: 150 KKEAEQLAARAAVLSL 165
>gi|307776249|pdb|2L2M|A Chain A, Solution Structure Of The Second Dsrbd Of Hyl1
Length = 77
Score = 53.9 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
L KN+LQE AQK YA+P+Y ++ F TVE+GG ++G ++KK AE+SA
Sbjct: 8 LCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISA 67
Query: 89 AKVAYMRLK 97
+ A + ++
Sbjct: 68 GRTALLAIQ 76
>gi|269127639|ref|YP_003301009.1| ribonuclease III [Thermomonospora curvata DSM 43183]
gi|268312597|gb|ACY98971.1| ribonuclease III [Thermomonospora curvata DSM 43183]
Length = 268
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSAA 89
+K LQEL +E +P Y+ +SG H TF +TV VGG + SG+G +SKK+AE AA
Sbjct: 180 WKTSLQELTAEEELGVPEYHVAESGPDHQKTFRATVRVGGVTYGSGEG-RSKKEAEQRAA 238
Query: 90 KVAYMRLKE 98
+ + +KE
Sbjct: 239 EATWHAIKE 247
>gi|311742943|ref|ZP_07716751.1| ribonuclease III [Aeromicrobium marinum DSM 15272]
gi|311313623|gb|EFQ83532.1| ribonuclease III [Aeromicrobium marinum DSM 15272]
Length = 232
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQE+A +P Y+ + +G HA +F + V +G VF+G +SKK+AE A+
Sbjct: 156 WKTSLQEMAAHHGLGVPRYHLEGTGPDHARSFTAEVHLGERVFAGGAGRSKKEAEQEVAE 215
Query: 91 VAYMRLKE 98
+A+ L +
Sbjct: 216 IAWRTLAD 223
>gi|296863416|pdb|3ADJ|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
Length = 76
Score = 53.5 bits (127), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
L KN+LQE AQK YA+P+Y ++ F TVE+GG ++G ++KK AE+SA
Sbjct: 5 LCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISA 64
Query: 89 AKVAYMRLK 97
+ A + ++
Sbjct: 65 GRTALLAIQ 73
>gi|9229939|dbj|BAB00641.1| dsRNA-binding protein ODB1 [Oryza sativa Japonica Group]
Length = 425
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEV-FSGQGAKSKKQAEMSA 88
L KN+LQE AQK YA+P Y +S AP F+ TVE+ E + G A++KK AE+ A
Sbjct: 118 LCKNLLQEYAQKMNYAIPSYICTKSASGLAP-FICTVEIWWEYKYIGAAARTKKDAEIKA 176
Query: 89 AKVAYMRLK 97
A+ A + ++
Sbjct: 177 ARTALLAIQ 185
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQA 84
++ ++K+ LQE AQK P Y+T + G SH P F STV + + S G ++K A
Sbjct: 29 ENCYVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAA 88
Query: 85 EMSAAKVAYMRL 96
E SAA+VA M +
Sbjct: 89 EQSAAEVALMEI 100
>gi|116787066|gb|ABK24361.1| unknown [Picea sitchensis]
Length = 346
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 32 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 91
KNVL+++A K+ P Y + GE+H PTF + VE+ G ++G A SKK A AA
Sbjct: 86 KNVLEDIALKKNMPPPSYKFSKEGEAHCPTFTAIVEINGAFYAGDPANSKKDATNKAACK 145
Query: 92 AYMRLKEPNPSQGPALVS 109
A +R +P+ Q ++++
Sbjct: 146 A-IRAIDPHYFQAESIIN 162
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF 73
++K LQE QK ++ LPVY+T G+ H P F TV V G +
Sbjct: 1 MFKGRLQEYTQKNSFPLPVYDTVNEGQDHIPRFKCTVTVNGARY 44
>gi|115476208|ref|NP_001061700.1| Os08g0384100 [Oryza sativa Japonica Group]
gi|75225116|sp|Q6YW64.1|DRB4_ORYSJ RecName: Full=Double-stranded RNA-binding protein 4; AltName:
Full=dsRNA-binding protein 4
gi|40253891|dbj|BAD05825.1| unknown protein [Oryza sativa Japonica Group]
gi|113623669|dbj|BAF23614.1| Os08g0384100 [Oryza sativa Japonica Group]
gi|387538563|gb|AFJ79550.1| double stranded RNA binding protein 1-4 [Oryza sativa Indica Group]
Length = 312
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSK-KQAEMSAA 89
YK+ LQE Q+ LP+Y TK GE H F STV V GE FS + K AE AA
Sbjct: 39 YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSSTFCHRRVKDAEQDAA 98
Query: 90 KVAYMRLKE 98
KVAY L E
Sbjct: 99 KVAYDTLLE 107
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 20 MFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAK 79
+F + D V K++L E K P Y+ ++ S P +VS+V G ++G A+
Sbjct: 118 VFELIDQDVVFSKSILHEYTTKTKTDQPEYSVTKTEGSVTP-YVSSVSFAGHTYTGGAAR 176
Query: 80 SKKQAEMSAAKVAYMRL 96
+KK AE AA+ A L
Sbjct: 177 NKKDAEQKAARAAVKSL 193
>gi|125561394|gb|EAZ06842.1| hypothetical protein OsI_29078 [Oryza sativa Indica Group]
Length = 310
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSK-KQAEMSAA 89
YK+ LQE Q+ LP+Y TK GE H F STV V GE FS + K AE AA
Sbjct: 37 YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSSTFCHRRVKDAEQDAA 96
Query: 90 KVAYMRLKE 98
KVAY L E
Sbjct: 97 KVAYDTLLE 105
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 20 MFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAK 79
+F + D V K++L E K P Y+ ++ S P +VS+V G ++G A+
Sbjct: 116 VFELIDQDVVFSKSILHEYTTKTKTDQPEYSVTKTEGSVTP-YVSSVSFAGHTYTGGAAR 174
Query: 80 SKKQAEMSAAKVAYMRL 96
+KK AE AA+ A L
Sbjct: 175 NKKDAEQKAARAAVKSL 191
>gi|150021479|ref|YP_001306833.1| ribonuclease III [Thermosipho melanesiensis BI429]
gi|149794000|gb|ABR31448.1| Ribonuclease III [Thermosipho melanesiensis BI429]
Length = 231
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
YK LQEL Q + LPVY T G F++T+++ +++S SKK AE AAK
Sbjct: 162 YKTKLQELTQDKFKQLPVYETTTVG----GKFITTLKINNKIYSKAKGSSKKDAEKLAAK 217
Query: 91 VAYMRLKEP 99
+AY +LKE
Sbjct: 218 IAYEKLKEE 226
>gi|224069354|ref|XP_002302963.1| predicted protein [Populus trichocarpa]
gi|222844689|gb|EEE82236.1| predicted protein [Populus trichocarpa]
Length = 452
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 27 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGA-KSKKQAE 85
D+++YKN LQE QK + LPVY T G +H P F STV V G + Q +K AE
Sbjct: 136 DNLMYKNRLQEYTQKSSLQLPVYQTLNEGPAHMPRFRSTVWVDGARYRSQKTFLHRKAAE 195
Query: 86 MSAAKVA 92
A +A
Sbjct: 196 QDVANLA 202
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 27 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 86
D+V K++L E A K P YNT QS P F+ST+ G ++G ++KK+AE
Sbjct: 221 DTVFCKSILNEFAVKVNREKPTYNTVQS-PGLLPVFISTLVFDGVSYTGDAGRNKKEAEQ 279
Query: 87 SAAKVAYMRL 96
AA+ + L
Sbjct: 280 LAARAVILSL 289
>gi|359488195|ref|XP_002272597.2| PREDICTED: double-stranded RNA-binding protein 4-like [Vitis
vinifera]
gi|296087161|emb|CBI33535.3| unnamed protein product [Vitis vinifera]
Length = 333
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 9/127 (7%)
Query: 27 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKS-KKQAE 85
+ +++KN LQE Q+ A LP+Y T G HAP F STV V G ++ S +K AE
Sbjct: 19 EHLMHKNRLQEYTQRSAIPLPIYQTVNEGFQHAPKFRSTVLVDGATYTSPNTFSHRKAAE 78
Query: 86 MSAAKVAYMRLKEPNPSQGPALVSPD-IQAQADYSSSSLQSNVTADLHHNIQTAG----- 139
A++A + + +G L+ D + ++ + +++ N+ + +Q G
Sbjct: 79 QDVARLALEFISKKIKDEGCPLIREDTVFCKSILNEFAVKMNLEKPTYTTVQPEGLLPVF 138
Query: 140 --RLVFN 144
LVFN
Sbjct: 139 VSSLVFN 145
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
+D+V K++L E A K P Y T Q E P FVS++ G ++G ++KK+AE
Sbjct: 103 EDTVFCKSILNEFAVKMNLEKPTYTTVQP-EGLLPVFVSSLVFNGVTYTGDAGRNKKEAE 161
Query: 86 MSAAKVAYMRL 96
AA+ + +
Sbjct: 162 QLAARTVILSI 172
>gi|117928781|ref|YP_873332.1| ribonuclease III [Acidothermus cellulolyticus 11B]
gi|117649244|gb|ABK53346.1| RNAse III [Acidothermus cellulolyticus 11B]
Length = 246
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL + +P Y+ + G H F + V +GG V+ SKK+AE AA+
Sbjct: 170 WKTSLQELTAAQHLGVPFYDLSERGPDHEKVFTAEVRIGGRVYGTGSGHSKKEAEQRAAQ 229
Query: 91 VAYMRLK 97
A++R++
Sbjct: 230 EAWLRIR 236
>gi|301058150|ref|ZP_07199202.1| ribonuclease III [delta proteobacterium NaphS2]
gi|300447782|gb|EFK11495.1| ribonuclease III [delta proteobacterium NaphS2]
Length = 236
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 31 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK++LQE Q+ LP Y T++ G +H F + V G V + KSKK+AE AA
Sbjct: 167 YKSLLQEFTQQAFKCLPQYRLTEEKGPAHDKVFCIVLAVNGIVMAEGMGKSKKEAEQHAA 226
Query: 90 KVAYMRLKE 98
K A++RL E
Sbjct: 227 KEAFLRLTE 235
>gi|357443939|ref|XP_003592247.1| hypothetical protein MTR_1g100710 [Medicago truncatula]
gi|355481295|gb|AES62498.1| hypothetical protein MTR_1g100710 [Medicago truncatula]
Length = 257
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 16/79 (20%)
Query: 20 MFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAK 79
MF Q+D+ K++LQEL+++E ++ P Y T Q + G F G+ +K
Sbjct: 172 MF--QKDEPCPSKSLLQELSEREGFSKPTYKTTQ--------------IEGIGFHGKASK 215
Query: 80 SKKQAEMSAAKVAYMRLKE 98
SK +AE AAK+AY+ LKE
Sbjct: 216 SKNKAEEDAAKIAYITLKE 234
>gi|218186280|gb|EEC68707.1| hypothetical protein OsI_37189 [Oryza sativa Indica Group]
Length = 474
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 9/119 (7%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQA 84
++ ++K+ LQE AQK P Y+T + G SH P F STV + + S G ++K A
Sbjct: 29 ENCYVFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAA 88
Query: 85 EMSAAKVAYMRLKEPNPSQG--PALVSPDIQAQADYSSS-SLQSNVT-----ADLHHNI 135
E SAA+VA M + + P+ PA+ Q + ++ S Q N+ AD HH +
Sbjct: 89 EQSAAEVALMEIVKSIPANANIPAVAHNSTQQETGLCNTGSQQLNLREMHREADHHHRL 147
>gi|374339789|ref|YP_005096525.1| ribonuclease III [Marinitoga piezophila KA3]
gi|372101323|gb|AEX85227.1| ribonuclease III [Marinitoga piezophila KA3]
Length = 240
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 31 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK LQEL QK+ P YN +Q G H TFV V++ G+V+ KSKK AE AA
Sbjct: 169 YKTRLQELTQKDLKIRPEYNLVRQDGPPHNRTFVVEVKINGKVYGKGIGKSKKVAEQLAA 228
Query: 90 KVAYMRLK 97
K A R K
Sbjct: 229 KEACERFK 236
>gi|348542300|ref|XP_003458623.1| PREDICTED: double-stranded RNA-specific editase 1-like [Oreochromis
niloticus]
Length = 714
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
+L KN L +L + + L Q+G HAP FV TVEV G+VF G G +KK+A++SA
Sbjct: 89 ILPKNALMQLNEIKP-GLQYKLLSQTGPVHAPVFVMTVEVNGQVFEGLGP-TKKKAKLSA 146
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN + + + A D++S
Sbjct: 147 AEKALCSFVQFPNALEAHVAMGRTLSAHTDFTS 179
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA FV +V V + F G G ++KK A+ AA+ A L ++P P
Sbjct: 266 ESGESHAKNFVMSVTVDSQNFQGSG-RNKKLAKTRAAQAALSALFKIQLDQTPSRQPIPR 324
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 325 EGLQLHQPQVLADA 338
>gi|50954668|ref|YP_061956.1| ribonuclease III [Leifsonia xyli subsp. xyli str. CTCB07]
gi|81391047|sp|Q6AFJ4.1|RNC_LEIXX RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|50951150|gb|AAT88851.1| ribonuclease III [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 237
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 36/65 (55%)
Query: 32 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 91
K LQE A PVY +G H+ TF +TV+VGG V + SKKQAEM+AA
Sbjct: 163 KTSLQEAAAHHGAGQPVYTVINTGPDHSKTFHATVDVGGLVTASGEGTSKKQAEMAAALS 222
Query: 92 AYMRL 96
A+ L
Sbjct: 223 AWTAL 227
>gi|227494679|ref|ZP_03924995.1| ribonuclease III [Actinomyces coleocanis DSM 15436]
gi|226831861|gb|EEH64244.1| ribonuclease III [Actinomyces coleocanis DSM 15436]
Length = 256
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
YK LQE + + P+Y + G HA F++TV VGGE+ A SKK A+ AA+
Sbjct: 174 YKTTLQEYCAEASLGEPIYEAEGFGPDHARYFIATVTVGGELVGHGQASSKKGAKSEAAR 233
Query: 91 VAYMRLKE 98
Y + +
Sbjct: 234 AGYFNITQ 241
>gi|414870580|tpg|DAA49137.1| TPA: hypothetical protein ZEAMMB73_523306 [Zea mays]
Length = 334
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 38 LAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKS-KKQAEMSAAKVAY 93
A++ P+Y + G+SH P F TVEVG + FS G+ S KK+AE AA+VAY
Sbjct: 77 FAERTYKKTPIYKVESEGQSHQPKFTCTVEVGDQQFSSTGSFSRKKEAEQDAARVAY 133
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 7 ELLRSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPT-FVST 65
E+L ++ S + F + D+V K++L E A K LP Y+ T F +
Sbjct: 134 EILTTVSESDVKEAFELIDQDAVFCKSILIEFAVKTKTTLPSYSVVCVCLKKPLTLFAAI 193
Query: 66 VEVGGEVFSGQGAKSKKQAEMSAAKV 91
V G + G+ A +KK AE +AA+V
Sbjct: 194 VVFDGNAYHGESAPNKKDAEQNAARV 219
>gi|297559194|ref|YP_003678168.1| ribonuclease III [Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
gi|296843642|gb|ADH65662.1| ribonuclease III [Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
Length = 248
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E +P Y+ +SG H TF +TV V GE + +SKK+AE AA+
Sbjct: 164 WKTSLQELTAAEMLGVPEYHVDESGPDHQKTFRATVRVAGESYGLGEGRSKKEAEQQAAE 223
Query: 91 VAYMRLK 97
A+ +K
Sbjct: 224 SAWKAIK 230
>gi|403510495|ref|YP_006642133.1| ribonuclease III [Nocardiopsis alba ATCC BAA-2165]
gi|402803356|gb|AFR10766.1| ribonuclease III [Nocardiopsis alba ATCC BAA-2165]
Length = 267
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E +P Y+ +SG H TF +TV V GE + +SKK+AE AA+
Sbjct: 164 WKTSLQELTAAEMLGVPEYHVDESGPDHQKTFRATVRVAGESYGLGEGRSKKEAEQQAAE 223
Query: 91 VAYMRLK---EPNPSQG 104
A+ ++ E + +QG
Sbjct: 224 SAWKAIRARSEQSAAQG 240
>gi|356551805|ref|XP_003544264.1| PREDICTED: uncharacterized protein LOC100798730 [Glycine max]
Length = 434
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKS-KKQAEMSA 88
+YKN LQE K PVY T G+ H+P F STV V ++ Q S KK AE A
Sbjct: 1 MYKNRLQEFTSKSGINFPVYQTINEGQDHSPKFRSTVWVADMGYTSQSTFSHKKAAEHEA 60
Query: 89 AKVAYMRLKEPNPSQGPALVS 109
A++A + + +G +LV+
Sbjct: 61 ARLALESILKRTRDEGLSLVN 81
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHA-PTFVSTVEVGGEVFSGQGAKSKKQAEM 86
S K+++ E A K P YNT Q P F++++ G ++G A++KK+AE
Sbjct: 84 SPFSKSIMNEYADKLHVEQPTYNTDQQQLGGVLPIFITSLVFNGTSYTGDPARTKKEAEQ 143
Query: 87 SAAKVAYMRL 96
SAAK A + +
Sbjct: 144 SAAKAAILSI 153
>gi|312140459|ref|YP_004007795.1| ribonuclease iii [Rhodococcus equi 103S]
gi|325675924|ref|ZP_08155607.1| ribonuclease III [Rhodococcus equi ATCC 33707]
gi|311889798|emb|CBH49115.1| ribonuclease III [Rhodococcus equi 103S]
gi|325553162|gb|EGD22841.1| ribonuclease III [Rhodococcus equi ATCC 33707]
Length = 256
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL + +P Y +G H F +TV VGG+ F +SKK+AE AA
Sbjct: 174 WKTSLQELTAERGIGVPSYEITATGPDHDKEFTATVVVGGDAFGVGVGRSKKEAEQKAAS 233
Query: 91 VAYMRLKEPNPSQGPALVSPD 111
A+ L E S +V PD
Sbjct: 234 TAWSALSEAAQS----VVLPD 250
>gi|206603814|gb|EDZ40294.1| Ribonuclease III [Leptospirillum sp. Group II '5-way CG']
Length = 247
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 22 TNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKS 80
T QED YK LQE Q+E LPVY Q G H F V + G+++ +S
Sbjct: 156 TVQEDSIQDYKTDLQEYCQRELETLPVYQVMDQRGPDHQKEFDVAVLIRGKIYGEGSGRS 215
Query: 81 KKQAEMSAAKVAYMRL 96
KK+AE AAK A RL
Sbjct: 216 KKEAEQKAAKDALSRL 231
>gi|344306623|ref|XP_003421985.1| PREDICTED: double-stranded RNA-specific editase 1-like [Loxodonta
africana]
Length = 701
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP F+ +VEV G+VF G G KK +A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFIMSVEVNGQVFEGSGPTKKKAKLHAA 135
Query: 89 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGRL 141
K ++ PN S+ + + D++S Q++ L + +T RL
Sbjct: 136 EKALRSFVQFPNASEAHLAMGRTLSVNTDFTSD--QADFPDTLFNGFETPDRL 186
Score = 37.0 bits (84), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKNFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALAAIFNLHLDQTPSRQPIPS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|217077865|ref|YP_002335583.1| ribonuclease III [Thermosipho africanus TCF52B]
gi|217037720|gb|ACJ76242.1| ribonuclease III [Thermosipho africanus TCF52B]
Length = 159
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
YK LQE+ Q LPVY+T S F++T+ + G+++S SKK++E AAK
Sbjct: 91 YKTKLQEITQDRFKQLPVYDT----VSQKNKFITTLYIDGKIYSKAEGFSKKESEKLAAK 146
Query: 91 VAYMRLKE 98
+AY +LKE
Sbjct: 147 IAYEKLKE 154
>gi|357462007|ref|XP_003601285.1| hypothetical protein MTR_3g078040 [Medicago truncatula]
gi|355490333|gb|AES71536.1| hypothetical protein MTR_3g078040 [Medicago truncatula]
Length = 343
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKS-KKQAEMSA 88
+YK+ LQ+ Q+ Y +P Y + G HA F S V +GG +GQG + +K AE
Sbjct: 43 VYKSKLQDFVQRCGYVVPAYQSINEGMQHASKFRSNVTMGGITINGQGTYARRKDAEQEI 102
Query: 89 AKVA 92
AK+A
Sbjct: 103 AKIA 106
>gi|284032688|ref|YP_003382619.1| ribonuclease III [Kribbella flavida DSM 17836]
gi|283811981|gb|ADB33820.1| ribonuclease III [Kribbella flavida DSM 17836]
Length = 249
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL + +P Y +SG HA TF + V +G + + +SKK+AE AA+
Sbjct: 170 WKTSLQELVAQLGVGVPEYVIAESGPDHAKTFEARVRIGSDTYGHGIGRSKKEAEQQAAE 229
Query: 91 VAYMRLKEPNP 101
A+ L+ +P
Sbjct: 230 TAWKALRAAHP 240
>gi|432935587|ref|XP_004082035.1| PREDICTED: double-stranded RNA-specific editase 1-like [Oryzias
latipes]
Length = 744
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV TVEV G+VF G G +KK+A+++A
Sbjct: 123 VLPKNALMQLNEIKP-GLQYKLLSQTGPVHAPVFVMTVEVNGQVFEGMGP-TKKKAKLNA 180
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + D++S
Sbjct: 181 AEKALRSFVQFPNASEAHMAMGRTLTVNTDFTS 213
>gi|403251460|ref|ZP_10917800.1| dsRNA-specific ribonuclease [actinobacterium SCGC AAA027-L06]
gi|402915220|gb|EJX36203.1| dsRNA-specific ribonuclease [actinobacterium SCGC AAA027-L06]
Length = 212
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 32 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSAAK 90
K LQELA P Y +SG H +F++T VG E F +GQG KSK++AE SAAK
Sbjct: 141 KTALQELAASLNLPSPEYEISESGPDHDKSFIATALVGSERFETGQG-KSKREAEQSAAK 199
Query: 91 VAYMRL 96
+A+ L
Sbjct: 200 LAHEHL 205
>gi|161484666|ref|NP_571685.2| adenosine deaminase, RNA-specific, B1 [Danio rerio]
Length = 720
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
+L KN L +L + + L Q+G HAP FV TVEV G++F G G +KK+A+++A
Sbjct: 93 ILPKNALMQLNEIKP-GLQYKLLSQTGPVHAPVFVMTVEVNGQLFEGSGP-TKKKAKLNA 150
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + AD++S
Sbjct: 151 AEKALRSFVQFPNASEAHLAMGRTLTVNADFTS 183
>gi|15593021|gb|AAL02181.1|AF403112_1 adenosine deaminase [Danio rerio]
gi|15593015|gb|AAL02179.1| adenosine deaminase [Danio rerio]
Length = 720
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
+L KN L +L + + L Q+G HAP FV TVEV G++F G G +KK+A+++A
Sbjct: 93 ILPKNALMQLNEIKP-GLQYKLLSQTGPVHAPVFVMTVEVNGQLFEGSGP-TKKKAKLNA 150
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + AD++S
Sbjct: 151 AEKALRSFVQFPNASEAHLAMGRTLTVNADFTS 183
>gi|419760458|ref|ZP_14286737.1| ribonuclease III [Thermosipho africanus H17ap60334]
gi|407514561|gb|EKF49376.1| ribonuclease III [Thermosipho africanus H17ap60334]
Length = 230
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
YK LQE+ Q LPVY T S F++T+ + G+++S SKK++E AAK
Sbjct: 162 YKTKLQEITQDRFKQLPVYETV----SQKNKFITTLYIDGKIYSKAEGFSKKESEKLAAK 217
Query: 91 VAYMRLKE 98
+AY +LKE
Sbjct: 218 IAYEKLKE 225
>gi|15593018|gb|AAL02180.1|AF403111_1 adenosine deaminase [Danio rerio]
gi|15593024|gb|AAL02182.1|AF403113_1 adenosine deaminase [Danio rerio]
Length = 689
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
+L KN L +L + + L Q+G HAP FV TVEV G++F G G +KK+A+++A
Sbjct: 62 ILPKNALMQLNEIKP-GLQYKLLSQTGPVHAPVFVMTVEVNGQLFEGSGP-TKKKAKLNA 119
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + AD++S
Sbjct: 120 AEKALRSFVQFPNASEAHLAMGRTLTVNADFTS 152
>gi|424866544|ref|ZP_18290379.1| Ribonuclease III [Leptospirillum sp. Group II 'C75']
gi|124515064|gb|EAY56575.1| ribonuclease III [Leptospirillum rubarum]
gi|387222846|gb|EIJ77248.1| Ribonuclease III [Leptospirillum sp. Group II 'C75']
Length = 247
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 22 TNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKS 80
T ED YK LQE Q+E LPVY Q G H F V + G+++ KS
Sbjct: 156 TVHEDSIQDYKTDLQEYCQRELETLPVYQVMDQRGPDHQKEFDVAVLIRGKIYGEGSGKS 215
Query: 81 KKQAEMSAAKVAYMRL 96
KK+AE AAK A RL
Sbjct: 216 KKEAEQKAAKDALSRL 231
>gi|381181552|ref|ZP_09890386.1| RNAse III [Treponema saccharophilum DSM 2985]
gi|380766772|gb|EIC00777.1| RNAse III [Treponema saccharophilum DSM 2985]
Length = 249
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 31 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK++LQE QK+ PVY K+SG H F TV + G + KSKK+AE +AA
Sbjct: 179 YKSLLQEWYQKKYKECPVYELVKKSGPEHDKVFWVTVHLKGASYGPAQGKSKKEAEQNAA 238
Query: 90 KVAYMRL 96
K AY L
Sbjct: 239 KAAYEEL 245
>gi|410479646|ref|YP_006767283.1| dsRNA-specific ribonuclease [Leptospirillum ferriphilum ML-04]
gi|406774898|gb|AFS54323.1| dsRNA-specific ribonuclease [Leptospirillum ferriphilum ML-04]
Length = 247
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 22 TNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKS 80
T ED YK LQE Q+E LPVY Q G H F V + G+++ KS
Sbjct: 156 TVHEDSIQDYKTDLQEYCQRELETLPVYQVMDQRGPDHQKEFDVAVLIRGKIYGEGSGKS 215
Query: 81 KKQAEMSAAKVAYMRL 96
KK+AE AAK A RL
Sbjct: 216 KKEAEQKAAKDALSRL 231
>gi|156717296|ref|NP_001096190.1| adenosine deaminase, RNA-specific, B1 [Xenopus (Silurana)
tropicalis]
gi|134024214|gb|AAI36175.1| LOC100124739 protein [Xenopus (Silurana) tropicalis]
Length = 719
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP F+ TVEV G+VF G G +KK+A+++A
Sbjct: 97 VLPKNALMQLNEIKP-GLQYKLISQTGPVHAPVFIMTVEVNGQVFEGSGP-TKKKAKLNA 154
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + D++S
Sbjct: 155 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 187
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA FV +V V E F G G ++KK A+ AA+ A L ++P PS
Sbjct: 273 ESGESHAKNFVMSVTVDNETFEGSG-RNKKLAKARAAQSALASLFNMHLDQTPSRQPIPS 331
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 332 EGLQLHLPQVLADA 345
>gi|432098534|gb|ELK28243.1| Double-stranded RNA-specific editase 1 [Myotis davidii]
Length = 674
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 67/160 (41%), Gaps = 26/160 (16%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
L KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 77 LPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVISVEVNGQVFEGSGPTKKKAKLQAAE 135
Query: 90 KVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGRLVFNPNSMP 149
K ++ PN S+ + + A D++S Q++ L + +T R
Sbjct: 136 KALRSFVQFPNASEAHLAMGRSLSANTDFTSD--QADFPDALFNGFETPDR--------- 184
Query: 150 KVQAEEIRELTTVNTEVAGYDLSQFPQPEFSSSSDLSASS 189
+EV Y S FSSS DLS S+
Sbjct: 185 --------------SEVPFYMGSNGGDDSFSSSGDLSLSA 210
>gi|148272538|ref|YP_001222099.1| ribonuclease III [Clavibacter michiganensis subsp. michiganensis
NCPPB 382]
gi|147830468|emb|CAN01403.1| ribonuclease III [Clavibacter michiganensis subsp. michiganensis
NCPPB 382]
Length = 238
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 37/66 (56%)
Query: 32 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 91
K LQE A ++ PVY+ SG H+ F + V VG V + SKKQAEM+AA
Sbjct: 168 KTALQESAARQGLPAPVYDVSDSGPDHSKRFHAVVTVGDAVRTTGEGSSKKQAEMTAALE 227
Query: 92 AYMRLK 97
A+ RL+
Sbjct: 228 AWTRLE 233
>gi|302338403|ref|YP_003803609.1| ribonuclease III [Spirochaeta smaragdinae DSM 11293]
gi|301635588|gb|ADK81015.1| ribonuclease III [Spirochaeta smaragdinae DSM 11293]
Length = 244
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 31 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK +LQE QK+ + P Y+ K++G H TF V++ G+V+ K+KK+AE AA
Sbjct: 173 YKTLLQEYVQKQFKSYPRYSLVKKTGPDHDRTFWIEVKIDGKVYGPGKGKNKKEAEQHAA 232
Query: 90 KVAYMRL 96
+AY +L
Sbjct: 233 GLAYRKL 239
>gi|414888358|tpg|DAA64372.1| TPA: hypothetical protein ZEAMMB73_304518 [Zea mays]
Length = 246
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSAA 89
YK+ LQ AQK LP Y + G AP F S V + G+ F S + + K+AE AA
Sbjct: 93 YKSQLQIYAQKRGKLLPSYRLIRVGSLGAPLFKSEVTIDGQTFESPEYCHTIKEAETVAA 152
Query: 90 KVAYMRL-KEPNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGRLVFNPNSM 148
KVA M L +E NP+Q LV D+ SN +A ++ G
Sbjct: 153 KVALMSLPQEANPTQ-QLLVGLDV------------SNYSAGFVSTVEIQGVTFHGKRGN 199
Query: 149 PKVQAE 154
K QAE
Sbjct: 200 TKKQAE 205
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSG--QGAKSKKQAEMS 87
+YK+ LQEL QK +A +Y + G +HAP F +TV V GE FS +G KS K+A
Sbjct: 1 MYKSRLQELCQKRRWASSLYEPTREGPAHAPLFHATVIVNGERFSSRDEGEKSLKEAYNL 60
Query: 88 AAKVAY 93
A A+
Sbjct: 61 TAMAAF 66
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 57 SHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 97
+++ FVSTVE+ G F G+ +KKQAEM+AAK A+ LK
Sbjct: 177 NYSAGFVSTVEIQGVTFHGKRGNTKKQAEMNAAKSAFEHLK 217
>gi|72161055|ref|YP_288712.1| ribonuclease III [Thermobifida fusca YX]
gi|90101652|sp|Q47S78.1|RNC_THEFY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|71914787|gb|AAZ54689.1| RNAse III [Thermobifida fusca YX]
Length = 240
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSAA 89
+K LQEL E +P Y ++SG H TF +TV V G+ + SG+G +SKK+AE AA
Sbjct: 164 WKTSLQELTAAELLGVPEYVVEESGPDHQKTFRATVRVAGQTYGSGEG-RSKKEAEQQAA 222
Query: 90 KVAYMRLK 97
+ A+ ++
Sbjct: 223 ESAWKAIR 230
>gi|74096351|ref|NP_001027865.1| adenosine deaminase ADAR2-b variant [Takifugu rubripes]
gi|7798622|gb|AAF69765.1| double stranded RNA adenosine deaminase RED1B [Takifugu rubripes]
gi|22506833|gb|AAM97656.1| adenosine deaminase ADAR2-b variant [Takifugu rubripes]
Length = 698
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV TVEV G++F G G +KK+A+++A
Sbjct: 74 VLPKNALMQLNEIKP-GLQYKLLSQTGPVHAPVFVMTVEVNGQIFEGMGP-TKKKAKLNA 131
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + D++S
Sbjct: 132 AEKALRSFVQFPNASEAHLAMGRTLTVNTDFTS 164
>gi|336452822|ref|YP_004607288.1| ribonuclease III [Helicobacter bizzozeronii CIII-1]
gi|335332849|emb|CCB79576.1| ribonuclease III [Helicobacter bizzozeronii CIII-1]
Length = 223
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK+ LQEL Q +P Y K +SG HA F + + +++ A SKKQAE A
Sbjct: 153 YKSALQELTQARFKVVPTYTLKNESGPDHAKQFEMQIFILNKLYGTCKASSKKQAEQLCA 212
Query: 90 KVAYMRLKE 98
+VAY +LKE
Sbjct: 213 QVAYEQLKE 221
>gi|47220235|emb|CAF99000.1| unnamed protein product [Tetraodon nigroviridis]
Length = 810
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV TVEV G++F G G +KK+A+++A
Sbjct: 175 VLPKNALMQLNEIKP-GLQYKLLSQTGPVHAPVFVMTVEVNGQIFEGMGP-TKKKAKLNA 232
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + D++S
Sbjct: 233 AEKALRSFVQFPNASEAHLAMGRTLTVNTDFTS 265
>gi|301767390|ref|XP_002919107.1| PREDICTED: double-stranded RNA-specific editase 1-like isoform 2
[Ailuropoda melanoleuca]
Length = 741
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 11/115 (9%)
Query: 30 LYKNVLQELAQKEA---YALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 86
L KN L +L + + YAL Q+G HAP FV +VEV G+VF G G +KK+A++
Sbjct: 78 LPKNALMQLNEIKPGLQYAL----LSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKL 132
Query: 87 SAAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGR 140
AA+ A + PN S+ + + A D++S Q++ L + +T R
Sbjct: 133 HAAEKALRSFVQFPNASEAHLAMGRTLSANTDFTSD--QADFPDTLFNGFETPDR 185
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|395851269|ref|XP_003798187.1| PREDICTED: double-stranded RNA-specific editase 1 [Otolemur
garnettii]
Length = 1168
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 544 VLPKNALMQLNEVKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAA 602
Query: 89 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSS 120
K ++ PN S+ + + A D++S
Sbjct: 603 EKALRSFVQFPNASEAHLAMGRTLSANTDFTS 634
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 721 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 779
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 780 EGLQLHLPQVLADA 793
>gi|302807261|ref|XP_002985343.1| hypothetical protein SELMODRAFT_446247 [Selaginella moellendorffii]
gi|300146806|gb|EFJ13473.1| hypothetical protein SELMODRAFT_446247 [Selaginella moellendorffii]
Length = 1142
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 32 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
K +LQ L Q+ +A+P Y T+ SG F+S V V G+ F G+ A+SKKQAE
Sbjct: 1066 KGILQTLVQRAGFAVPTYQTRSSGSQ----FISCVVVRGKKFIGEPAESKKQAE 1115
>gi|403736854|ref|ZP_10949815.1| ribonuclease III [Austwickia chelonae NBRC 105200]
gi|403192949|dbj|GAB76585.1| ribonuclease III [Austwickia chelonae NBRC 105200]
Length = 267
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQELA AY +P Y ++G H F + +G EV SKK+AE AA+
Sbjct: 173 WKTSLQELAASGAYGVPEYKVSENGPDHEKVFTARAVIGEEVLGEGVGHSKKEAEQRAAE 232
Query: 91 VAYMRL 96
VA+ L
Sbjct: 233 VAWTEL 238
>gi|345849801|ref|ZP_08802808.1| ribonuclease III [Streptomyces zinciresistens K42]
gi|345638782|gb|EGX60282.1| ribonuclease III [Streptomyces zinciresistens K42]
Length = 260
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 170 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 229
Query: 91 VAYMRLK 97
A++ +K
Sbjct: 230 SAWLSIK 236
>gi|27357042|gb|AAN86547.1| adenosine deaminase [Takifugu rubripes]
Length = 750
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV TVEV G++F G G +KK+A+++A
Sbjct: 126 VLPKNALMQLNEIKP-GLQYKLLSQTGPVHAPVFVMTVEVNGQIFEGMGP-TKKKAKLNA 183
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + D++S
Sbjct: 184 AEKALRSFVQFPNASEAHLAMGRTLTVNTDFTS 216
>gi|323359692|ref|YP_004226088.1| dsRNA-specific ribonuclease [Microbacterium testaceum StLB037]
gi|323276063|dbj|BAJ76208.1| dsRNA-specific ribonuclease [Microbacterium testaceum StLB037]
Length = 230
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 32 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 91
K LQE+A + + P Y+ + +G H F +TV VG V +G G+ SKKQAEM+AA
Sbjct: 163 KTSLQEIAARLSVPAPTYSVEAAGPDHDRRFTATVRVGDVVTTGTGS-SKKQAEMAAALT 221
Query: 92 AYMRL 96
A+ L
Sbjct: 222 AWREL 226
>gi|433456418|ref|ZP_20414464.1| ribonuclease III [Arthrobacter crystallopoietes BAB-32]
gi|432196294|gb|ELK52760.1| ribonuclease III [Arthrobacter crystallopoietes BAB-32]
Length = 224
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 2 LEKQIELLRSMQRSQLSMMFTNQE--DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHA 59
L IE R M +S + + E +K +QELA Y + SG HA
Sbjct: 120 LTNGIETARQMVMRLISPLLADAEALGAGTDWKTSIQELAAARKMGSVEYAVQGSGPDHA 179
Query: 60 PTFVSTVEVGGEVFSGQG-AKSKKQAEMSAAKVAYMRLK 97
TFV+T+ +GG + GQG SKK+AE AA V++ +L+
Sbjct: 180 RTFVATLHIGGVAY-GQGTGHSKKEAEQEAAAVSWRQLR 217
>gi|301767388|ref|XP_002919106.1| PREDICTED: double-stranded RNA-specific editase 1-like isoform 1
[Ailuropoda melanoleuca]
Length = 701
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 11/115 (9%)
Query: 30 LYKNVLQELAQKEA---YALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 86
L KN L +L + + YAL Q+G HAP FV +VEV G+VF G G +KK+A++
Sbjct: 78 LPKNALMQLNEIKPGLQYAL----LSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKL 132
Query: 87 SAAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGR 140
AA+ A + PN S+ + + A D++S Q++ L + +T R
Sbjct: 133 HAAEKALRSFVQFPNASEAHLAMGRTLSANTDFTSD--QADFPDTLFNGFETPDR 185
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|92097709|gb|AAI15171.1| Adarb1 protein [Danio rerio]
Length = 233
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
+L KN L +L + + L Q+G HAP FV TVEV G++F G G +KK+A+++A
Sbjct: 93 ILPKNALMQLNEIKP-GLQYKLLSQTGPVHAPVFVMTVEVNGQLFEGSGP-TKKKAKLNA 150
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + AD++S
Sbjct: 151 AEKALRSFVQFPNASEAHLAMGRTLTVNADFTS 183
>gi|255545984|ref|XP_002514052.1| conserved hypothetical protein [Ricinus communis]
gi|223547138|gb|EEF48635.1| conserved hypothetical protein [Ricinus communis]
Length = 412
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 27 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAE 85
+ ++K LQE AQK+ P+Y T + G SH P+F STV V + S G ++K AE
Sbjct: 12 NCYVFKRRLQEYAQKKGLPTPLYETIKEGPSHEPSFRSTVIVNDIRYDSLPGFLNRKAAE 71
Query: 86 MSAAKVAYMRLKE 98
SA +VA M L +
Sbjct: 72 QSAVEVALMELAK 84
>gi|281341190|gb|EFB16774.1| hypothetical protein PANDA_007702 [Ailuropoda melanoleuca]
Length = 718
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 30 LYKNVLQELAQKEA---YALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 86
L KN L +L + + YAL Q+G HAP FV +VEV G+VF G G KK
Sbjct: 68 LPKNALMQLNEIKPGLQYAL----LSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLH 123
Query: 87 SAAKVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGR 140
+A K ++ PN S+ + + A D++S Q++ L + +T R
Sbjct: 124 AAEKALRSFVQFPNASEAHLAMGRTLSANTDFTSD--QADFPDTLFNGFETPDR 175
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 244 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 302
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 303 EGLQLHLPQVLADA 316
>gi|63101747|gb|AAH95026.1| Adarb1 protein, partial [Danio rerio]
Length = 233
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
+L KN L +L + + L Q+G HAP FV TVEV G++F G G +KK+A+++A
Sbjct: 93 ILPKNALMQLNEIKP-GLQYKLLSQTGPVHAPVFVMTVEVNGQLFEGSGP-TKKKAKLNA 150
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + AD++S
Sbjct: 151 AEKALRSFVQFPNASEAHLAMGRTLTVNADFTS 183
>gi|410969853|ref|XP_003991406.1| PREDICTED: double-stranded RNA-specific editase 1 [Felis catus]
Length = 701
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 11/115 (9%)
Query: 30 LYKNVLQELAQKEA---YALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 86
L KN L +L + + YAL Q+G HAP FV +VEV G+VF G G +KK+A++
Sbjct: 78 LPKNALMQLNEIKPGLQYAL----LSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKL 132
Query: 87 SAAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGR 140
AA+ A + PN S+ + + A D++S Q++ L + +T R
Sbjct: 133 HAAEKALRSFVQFPNASEAHLAMGRTLSANTDFTSD--QADFPDTLFNGFETPDR 185
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|302795757|ref|XP_002979641.1| hypothetical protein SELMODRAFT_419303 [Selaginella moellendorffii]
gi|300152401|gb|EFJ19043.1| hypothetical protein SELMODRAFT_419303 [Selaginella moellendorffii]
Length = 1665
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 32 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
K +LQ L Q+ +A+P Y T+ SG F+S V V G+ F G+ A+SKKQAE
Sbjct: 949 KGILQTLVQRAGFAVPTYQTRSSGSQ----FISCVVVRGKKFIGEPAESKKQAE 998
>gi|400975048|ref|ZP_10802279.1| ribonuclease III [Salinibacterium sp. PAMC 21357]
Length = 233
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 37/68 (54%)
Query: 32 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 91
K LQELA K P Y + SG H+ F ++V + GEV S SKK AEM+AA
Sbjct: 164 KTSLQELAAKMGRGAPDYRIEDSGPDHSKRFHASVVLSGEVISTGIGSSKKHAEMAAALE 223
Query: 92 AYMRLKEP 99
A+ L+ P
Sbjct: 224 AWTLLQAP 231
>gi|345795485|ref|XP_544931.3| PREDICTED: double-stranded RNA-specific editase 1 [Canis lupus
familiaris]
Length = 701
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 30 LYKNVLQELAQKEA---YALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 86
L KN L +L + + YAL Q+G HAP FV +VEV G+VF G G KK
Sbjct: 78 LPKNALMQLNEIKPGLQYAL----LSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLH 133
Query: 87 SAAKVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGR 140
+A K ++ PN S+ + + A D++S Q++ L + +T R
Sbjct: 134 AAEKALRSFVQFPNASEAHLAMGRTLSANTDFTSD--QADFPDTLFNGFETPDR 185
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|335300848|ref|XP_003132836.2| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific
editase 1-like [Sus scrofa]
Length = 650
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
L KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ AA
Sbjct: 81 LPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHAA 138
Query: 90 KVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
+ A + PN S+ + + A AD++S
Sbjct: 139 EKALRSFVQFPNASEAHLAMGRTLSANADFTS 170
>gi|1657636|gb|AAB18134.1| RNA adenosine deaminase [Homo sapiens]
Length = 711
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 77 VLPKNALMQLDEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAA 135
Query: 89 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQT 137
K ++ PN S+ + + D++S Q++ L + ++T
Sbjct: 136 EKALRYFVQFPNASEAHLAMGRTLSVNTDFTSD--QADFPDTLFNGLET 182
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPVLS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|338720836|ref|XP_001489941.2| PREDICTED: double-stranded RNA-specific editase 1-like [Equus
caballus]
Length = 700
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
L KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 77 LPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAAE 135
Query: 90 KVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGR 140
K ++ PN S+ + + A D++S Q++ L + +T R
Sbjct: 136 KALRSFVQFPNASEAHLAMGRTLSANTDFTSD--QADFPDTLFNGFETPDR 184
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 253 ESGESHAKNFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 311
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 312 EGLQLHLPQVLADA 325
>gi|188585989|ref|YP_001917534.1| Ribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
gi|229564354|sp|B2A2N1.1|RNC_NATTJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|179350676|gb|ACB84946.1| Ribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 230
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Query: 7 ELLRSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVST 65
+L+ + + QLS + + D YK ++QEL Q P Y K+SG H +FV+
Sbjct: 141 QLILDLFKDQLSHIDNQRIGD---YKTMIQELVQDRYGDPPKYQIVKESGPDHDKSFVAE 197
Query: 66 VEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
V++ EV KSKK+AE +AA A+ +L
Sbjct: 198 VQINNEVVGRGSGKSKKEAEQNAAHFAFQKL 228
>gi|384101471|ref|ZP_10002510.1| ribonuclease III [Rhodococcus imtechensis RKJ300]
gi|383841025|gb|EID80320.1| ribonuclease III [Rhodococcus imtechensis RKJ300]
Length = 252
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL + +P Y +G H F +TV VGG+ +SKK+AE AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPLGVGIGRSKKEAEQKAAS 232
Query: 91 VAYMRLKEPNPSQGPALVSPDIQA 114
A+ L + GP + + D+ A
Sbjct: 233 TAWNALSD----AGPDVAADDVSA 252
>gi|432336959|ref|ZP_19588421.1| ribonuclease III [Rhodococcus wratislaviensis IFP 2016]
gi|430776123|gb|ELB91584.1| ribonuclease III [Rhodococcus wratislaviensis IFP 2016]
Length = 252
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL + +P Y +G H F +TV VGG+ +SKK+AE AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPLGVGIGRSKKEAEQKAAS 232
Query: 91 VAYMRLKEPNPSQGPALVSPDIQA 114
A+ L + GP + + D+ A
Sbjct: 233 TAWNALSD----AGPDVAADDVSA 252
>gi|419964641|ref|ZP_14480595.1| ribonuclease III [Rhodococcus opacus M213]
gi|414570036|gb|EKT80775.1| ribonuclease III [Rhodococcus opacus M213]
Length = 252
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL + +P Y +G H F +TV VGG+ +SKK+AE AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPLGVGIGRSKKEAEQKAAS 232
Query: 91 VAYMRLKEPNPSQGPALVSPDIQA 114
A+ L + GP + + D+ A
Sbjct: 233 TAWNALSD----AGPDVAADDVSA 252
>gi|111023481|ref|YP_706453.1| ribonuclease III [Rhodococcus jostii RHA1]
gi|397736918|ref|ZP_10503594.1| ribonuclease III [Rhodococcus sp. JVH1]
gi|110823011|gb|ABG98295.1| ribonuclease III [Rhodococcus jostii RHA1]
gi|396927202|gb|EJI94435.1| ribonuclease III [Rhodococcus sp. JVH1]
Length = 252
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL + +P Y +G H F +TV VGG+ +SKK+AE AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPLGVGIGRSKKEAEQKAAS 232
Query: 91 VAYMRLKEPNPSQGPALVSPDIQA 114
A+ L + GP + + D+ A
Sbjct: 233 TAWNALSD----AGPDVAADDVSA 252
>gi|330836489|ref|YP_004411130.1| RNAse III [Sphaerochaeta coccoides DSM 17374]
gi|329748392|gb|AEC01748.1| RNAse III [Sphaerochaeta coccoides DSM 17374]
Length = 256
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK +LQE+ QK + PVY + SG H TF V V G +F +KK+AE +AA
Sbjct: 181 YKTLLQEIIQKRYHKYPVYELLRTSGPEHDRTFWVQVNVVGNIFGPASGANKKEAEQNAA 240
Query: 90 KVAY 93
AY
Sbjct: 241 CAAY 244
>gi|418679683|ref|ZP_13240944.1| ribonuclease III [Leptospira kirschneri serovar Grippotyphosa str.
RM52]
gi|418684609|ref|ZP_13245793.1| ribonuclease III [Leptospira kirschneri serovar Grippotyphosa str.
Moskva]
gi|418740311|ref|ZP_13296689.1| ribonuclease III [Leptospira kirschneri serovar Valbuzzi str.
200702274]
gi|421092430|ref|ZP_15553172.1| ribonuclease III [Leptospira kirschneri str. 200802841]
gi|421128722|ref|ZP_15588933.1| ribonuclease III [Leptospira kirschneri str. 2008720114]
gi|400320125|gb|EJO67998.1| ribonuclease III [Leptospira kirschneri serovar Grippotyphosa str.
RM52]
gi|409998785|gb|EKO49499.1| ribonuclease III [Leptospira kirschneri str. 200802841]
gi|410359834|gb|EKP06874.1| ribonuclease III [Leptospira kirschneri str. 2008720114]
gi|410740809|gb|EKQ85523.1| ribonuclease III [Leptospira kirschneri serovar Grippotyphosa str.
Moskva]
gi|410752315|gb|EKR09290.1| ribonuclease III [Leptospira kirschneri serovar Valbuzzi str.
200702274]
Length = 249
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK LQE +QK LP+Y TK +SG HA TF V + + + SKK AE +AA
Sbjct: 177 YKTQLQEYSQKHFKILPLYRTKSESGPDHAKTFQVVVRIRDQWEATGSGVSKKSAEQNAA 236
Query: 90 KVAYMRLKEPN 100
K Y R+++ N
Sbjct: 237 KELYNRIRKKN 247
>gi|326670793|ref|XP_687110.5| PREDICTED: double-stranded RNA-specific editase 1-like [Danio
rerio]
Length = 750
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV TVEV G++F G G +KK+A+++A
Sbjct: 125 VLPKNALMQLNEIKP-GLQYKLLSQTGPVHAPVFVMTVEVNGQLFEGSGP-TKKKAKLNA 182
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + D++S
Sbjct: 183 AEKALRSFVQFPNASEAHLAMGRTLTVNTDFTS 215
>gi|348511509|ref|XP_003443286.1| PREDICTED: double-stranded RNA-specific editase 1-like [Oreochromis
niloticus]
Length = 747
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV TVEV G++F G G +KK+A+++A
Sbjct: 123 VLPKNALMQLNEIKP-GLQYKLLSQTGPVHAPVFVMTVEVNGQMFEGMGP-TKKKAKLNA 180
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + D++S
Sbjct: 181 AEKALRSFVQFPNASEAHLAMGRTLTVNTDFTS 213
>gi|417404003|gb|JAA48779.1| Putative trna-specific adenosine deaminase 1 [Desmodus rotundus]
Length = 701
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
L KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 78 LPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAAE 136
Query: 90 KVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGR 140
K ++ PN S+ + + A D++S Q++ L + +T R
Sbjct: 137 KALRSFVQFPNASEAHLAMGRSLSANTDFTSD--QADFPDTLFNGFETPDR 185
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 254 ESGESHAKNFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPILS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|291437029|ref|ZP_06576419.1| ribonuclease III [Streptomyces ghanaensis ATCC 14672]
gi|291339924|gb|EFE66880.1| ribonuclease III [Streptomyces ghanaensis ATCC 14672]
Length = 286
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 184 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 243
Query: 91 VAYMRLKE 98
A+ +K+
Sbjct: 244 SAWRSIKD 251
>gi|328865213|gb|EGG13599.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 760
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%)
Query: 32 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 91
KN LQE QK LP Y+ + + HA F+ V+V G ++ +KK AE AA V
Sbjct: 8 KNSLQEYCQKNKLTLPTYDVTTTCQDHAKKFMCKVKVQGHQYNSLWMDNKKDAEKHAATV 67
Query: 92 AYMRL 96
A + L
Sbjct: 68 ALVEL 72
>gi|417003249|ref|ZP_11942320.1| ribonuclease III [Anaerococcus prevotii ACS-065-V-Col13]
gi|325478725|gb|EGC81836.1| ribonuclease III [Anaerococcus prevotii ACS-065-V-Col13]
Length = 236
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 26 DDSVL--YKNVLQELAQ-KEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKK 82
DDS+ YK LQE K+ L K+ G HA TF V++G + + K+KK
Sbjct: 161 DDSIFNDYKTKLQEYHNAKDKKILKYELVKEEGPEHAKTFTMAVKLGNRILATGVGKNKK 220
Query: 83 QAEMSAAKVAYMRLKE 98
QAE AAK AY ++K+
Sbjct: 221 QAEQDAAKAAYNKIKK 236
>gi|403234829|ref|ZP_10913415.1| ribonuclease III [Bacillus sp. 10403023]
Length = 243
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK+ LQEL Q++ L Y Q G +H+ FVS V + GE KSKK+AE AA
Sbjct: 172 YKSQLQELVQRDGIGLIEYRVLQEKGPAHSREFVSRVSLNGEELGTGTGKSKKEAEQHAA 231
Query: 90 KVAYMRLK 97
++A LK
Sbjct: 232 EIALKNLK 239
>gi|424851985|ref|ZP_18276382.1| ribonuclease III [Rhodococcus opacus PD630]
gi|356666650|gb|EHI46721.1| ribonuclease III [Rhodococcus opacus PD630]
Length = 252
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL + +P Y +G H F +TV +GG+ +SKK+AE AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIIGGKPLGVGIGRSKKEAEQKAAS 232
Query: 91 VAYMRLKEPNPSQGPALVSPDIQA 114
A+ L + GP + + D+ A
Sbjct: 233 TAWNALSD----AGPDVAADDVSA 252
>gi|226365983|ref|YP_002783766.1| ribonuclease III [Rhodococcus opacus B4]
gi|226244473|dbj|BAH54821.1| ribonuclease III [Rhodococcus opacus B4]
Length = 252
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL + +P Y +G H F +TV VGG+ +SKK+AE AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPLGVGIGRSKKEAEQKAAS 232
Query: 91 VAYMRLKEPNP 101
A+ L + P
Sbjct: 233 TAWNALSDAGP 243
>gi|383782235|ref|YP_005466802.1| putative ribonuclease III [Actinoplanes missouriensis 431]
gi|381375468|dbj|BAL92286.1| putative ribonuclease III [Actinoplanes missouriensis 431]
Length = 246
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 30/55 (54%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
+K LQEL +P Y + SG HA TF + V V GE + G +SKKQAE
Sbjct: 167 WKTSLQELTAALGLGVPDYEIEDSGPDHAKTFTAWVVVAGERYGGSEGRSKKQAE 221
>gi|351707553|gb|EHB10472.1| Double-stranded RNA-specific editase 1 [Heterocephalus glaber]
Length = 744
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPCFVMSVEVNGQVFEGSGPTKKKAKLHAA 135
Query: 89 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQT 137
K ++ PN S+ + + D++S Q++ L + +T
Sbjct: 136 EKALRSFVQFPNASEAHLAMGRTLSVNTDFTSD--QADFPDTLFNGFET 182
>gi|440683448|ref|YP_007158243.1| Ribonuclease 3 [Anabaena cylindrica PCC 7122]
gi|428680567|gb|AFZ59333.1| Ribonuclease 3 [Anabaena cylindrica PCC 7122]
Length = 395
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 32 KNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSAA 89
K +LQ+ AQK + +P Y T Q +G H F VE+GG++ GQG K KK AE AA
Sbjct: 327 KGLLQQYAQKNGFDIPEYTTIQETGTDHNKEFTVQVEIGGQI-CGQGKGKRKKDAEKQAA 385
Query: 90 KVAYMRLK 97
A +L+
Sbjct: 386 ANALEKLR 393
>gi|377561842|ref|ZP_09791272.1| ribonuclease III [Gordonia otitidis NBRC 100426]
gi|377521037|dbj|GAB36437.1| ribonuclease III [Gordonia otitidis NBRC 100426]
Length = 256
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQELA + Y P Y +G H+ F + + GE ++KK+AE AA
Sbjct: 182 WKTSLQELAAERGYGPPQYQISSTGPDHSKEFTARAVIAGEELGEGVGRTKKEAEQKAAS 241
Query: 91 VAYMRLKEPNPS 102
+A+ L E PS
Sbjct: 242 LAWQALAERGPS 253
>gi|405967551|gb|EKC32699.1| Double-stranded RNA-specific editase 1 [Crassostrea gigas]
Length = 687
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 32 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 91
KN L +L + + L QSG HAPTF+ +VEV G F GQG +KK A +SAA+
Sbjct: 79 KNALMQLNEIKP-GLEFQFVAQSGPVHAPTFIMSVEVNGTKFEGQGP-TKKAARLSAAEK 136
Query: 92 AYMRLKE-PNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQT 137
A + PN S+ + + D++S + +++ L +N +T
Sbjct: 137 ALKSFVQFPNASEAHKALGRQVVNDGDFTSDNAEASNDV-LFNNFET 182
Score = 37.0 bits (84), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 34 VLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAY 93
+L EL Y K+ GESHA FV +V V G F G G ++KK A+ AA++A
Sbjct: 223 ILNELRPSLKYDF----VKEHGESHAKHFVMSVVVDGIKFEGSG-RNKKLAKSRAAQMAL 277
Query: 94 MRL 96
+L
Sbjct: 278 TKL 280
>gi|148699867|gb|EDL31814.1| adenosine deaminase, RNA-specific, B1, isoform CRA_e [Mus musculus]
Length = 717
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 83 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 140
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + D++S
Sbjct: 141 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 173
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 260 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPVLS 318
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 319 EGLQLHLPQVLADA 332
>gi|148699868|gb|EDL31815.1| adenosine deaminase, RNA-specific, B1, isoform CRA_f [Mus musculus]
Length = 707
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 83 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 140
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + D++S
Sbjct: 141 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 173
Score = 38.1 bits (87), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 260 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPVLS 318
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 319 EGLQLHLPQVLADA 332
>gi|67625743|ref|NP_570965.2| double-stranded RNA-specific editase 1 isoform 1 [Mus musculus]
gi|15529488|gb|AAL01301.1|AF403106_1 adenosine deaminase [Mus musculus]
gi|148699869|gb|EDL31816.1| adenosine deaminase, RNA-specific, B1, isoform CRA_g [Mus musculus]
gi|183396845|gb|AAI65982.1| Adenosine deaminase, RNA-specific, B1 [synthetic construct]
Length = 701
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPVLS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|13272337|gb|AAK17102.1|AF291049_1 RNA adenosine deaminase 2 [Mus musculus]
Length = 701
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAA 135
Query: 89 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSS 120
K ++ PN S+ + + D++S
Sbjct: 136 EKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPVLS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|67625747|ref|NP_001020008.1| double-stranded RNA-specific editase 1 isoform 2 [Mus musculus]
gi|68684375|sp|Q91ZS8.1|RED1_MOUSE RecName: Full=Double-stranded RNA-specific editase 1; AltName:
Full=RNA-editing deaminase 1; AltName: Full=RNA-editing
enzyme 1; AltName: Full=dsRNA adenosine deaminase
gi|15529490|gb|AAL01302.1|AF403107_1 adenosine deaminase [Mus musculus]
gi|74181126|dbj|BAE27830.1| unnamed protein product [Mus musculus]
gi|74202480|dbj|BAE24831.1| unnamed protein product [Mus musculus]
gi|148699866|gb|EDL31813.1| adenosine deaminase, RNA-specific, B1, isoform CRA_d [Mus musculus]
Length = 711
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPVLS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|1710075|sp|P51400.1|RED1_RAT RecName: Full=Double-stranded RNA-specific editase 1; AltName:
Full=RNA-editing deaminase 1; AltName: Full=RNA-editing
enzyme 1; AltName: Full=dsRNA adenosine deaminase
gi|1177853|gb|AAA96755.1| double-stranded RNA-specific editase [Rattus norvegicus]
gi|1586827|prf||2204394A RNA-editing enzyme
Length = 711
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAA 135
Query: 89 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSS 120
K ++ PN S+ + + D++S
Sbjct: 136 EKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPVLS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|161377407|ref|NP_037026.2| double-stranded RNA-specific editase 1 isoform 1 [Rattus
norvegicus]
gi|149043657|gb|EDL97108.1| adenosine deaminase, RNA-specific, B1, isoform CRA_b [Rattus
norvegicus]
Length = 711
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPVLS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|313673188|ref|YP_004051299.1| rnase iii [Calditerrivibrio nitroreducens DSM 19672]
gi|312939944|gb|ADR19136.1| RNAse III [Calditerrivibrio nitroreducens DSM 19672]
Length = 229
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK+ LQ+L QK +LP Y K ++G H TF+ + + + KSKK+AE AA
Sbjct: 158 YKSELQKLTQKIFESLPDYKVKDETGPEHDKTFIVDLYINDRYYCSGSGKSKKKAEQDAA 217
Query: 90 KVAYMRLKE 98
K A++ L E
Sbjct: 218 KKAFLMLSE 226
>gi|161377409|ref|NP_001104525.1| double-stranded RNA-specific editase 1 isoform 2 [Rattus
norvegicus]
gi|149043658|gb|EDL97109.1| adenosine deaminase, RNA-specific, B1, isoform CRA_c [Rattus
norvegicus]
Length = 701
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAA 135
Query: 89 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSS 120
K ++ PN S+ + + D++S
Sbjct: 136 EKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPVLS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|170781177|ref|YP_001709509.1| ribonuclease III [Clavibacter michiganensis subsp. sepedonicus]
gi|169155745|emb|CAQ00866.1| ribonuclease III [Clavibacter michiganensis subsp. sepedonicus]
Length = 238
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 36/66 (54%)
Query: 32 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 91
K LQE A ++ P Y+ SG H+ F + V VG V + SKKQAEM+AA
Sbjct: 168 KTALQESAARQGLPAPAYDVSDSGPDHSKRFHAVVTVGDAVRTTGEGSSKKQAEMTAALE 227
Query: 92 AYMRLK 97
A+ RL+
Sbjct: 228 AWTRLE 233
>gi|21954727|gb|AAM83099.1|AF525421_1 adenosine deaminase ADAR2 [Mus musculus]
gi|27357040|gb|AAN86546.1| adenosine deaminase [Mus musculus]
gi|148699863|gb|EDL31810.1| adenosine deaminase, RNA-specific, B1, isoform CRA_a [Mus musculus]
Length = 695
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 71 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 128
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + D++S
Sbjct: 129 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 161
Score = 37.7 bits (86), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 248 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPVLS 306
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 307 EGLQLHLPQVLADA 320
>gi|4379098|emb|CAB09392.1| RNA editing deaminase 1 [Homo sapiens]
Length = 699
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAA 135
Query: 89 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSS 120
K ++ PN S+ + + D++S
Sbjct: 136 EKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 37.0 bits (84), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALAAIFNLHLDQTPSRQPIPS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|455793316|gb|EMF45018.1| ribonuclease III [Leptospira interrogans serovar Lora str. TE 1992]
Length = 250
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK LQE +QK LP+Y TK +SG HA TF V + + + SKK AE +AA
Sbjct: 177 YKTQLQEYSQKHFKILPIYRTKSESGPDHAKTFQVVVRIRDQWEASGSGVSKKSAEQNAA 236
Query: 90 KVAYMRLKE 98
K Y R+++
Sbjct: 237 KELYNRIRK 245
>gi|15529494|gb|AAL01304.1|AF403109_1 adenosine deaminase [Mus musculus]
gi|148699864|gb|EDL31811.1| adenosine deaminase, RNA-specific, B1, isoform CRA_b [Mus musculus]
Length = 687
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 53 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAA 111
Query: 89 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSS 120
K ++ PN S+ + + D++S
Sbjct: 112 EKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 143
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 230 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPVLS 288
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 289 EGLQLHLPQVLADA 302
>gi|354476794|ref|XP_003500608.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 2
[Cricetulus griseus]
Length = 711
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G++F G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQIFEGSGP-TKKKAKLHA 134
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPVLS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|297287384|ref|XP_001118216.2| PREDICTED: double-stranded RNA-specific editase 1-like isoform 1
[Macaca mulatta]
gi|402862132|ref|XP_003895422.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 4 [Papio
anubis]
Length = 674
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|237681091|ref|NP_001153702.1| double-stranded RNA-specific editase 1 isoform 7 [Homo sapiens]
gi|71274097|dbj|BAE16329.1| adenosine deaminase acting on RNA type2d [Homo sapiens]
Length = 674
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 37.4 bits (85), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALAAIFNLHLDQTPSRQPIPS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|296270740|ref|YP_003653372.1| ribonuclease III [Thermobispora bispora DSM 43833]
gi|296093527|gb|ADG89479.1| ribonuclease III [Thermobispora bispora DSM 43833]
Length = 267
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKK 82
+K LQEL E+ +P Y+ +SG HA +FV+TV VGG+ + +SKK
Sbjct: 169 WKTSLQELTAAESLGVPEYHVDESGPDHAKSFVATVRVGGKEYGKGTGRSKK 220
>gi|407647467|ref|YP_006811226.1| ribonuclease III [Nocardia brasiliensis ATCC 700358]
gi|407310351|gb|AFU04252.1| ribonuclease III [Nocardia brasiliensis ATCC 700358]
Length = 237
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSAA 89
+K LQEL + +P Y +G H F +T +GG+ + GQG +SKK+AE AA
Sbjct: 168 WKTSLQELTAERGLGVPSYEITSTGPDHDKEFTATTMIGGQAY-GQGVGRSKKEAEQKAA 226
Query: 90 KVAYMRL 96
AY L
Sbjct: 227 GTAYQAL 233
>gi|332256658|ref|XP_003277433.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 2
[Nomascus leucogenys]
Length = 729
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 105 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAA 163
Query: 89 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSS 120
K ++ PN S+ + + D++S
Sbjct: 164 EKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 195
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 282 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPILS 340
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 341 EGLQLHLPQVLADA 354
>gi|149043656|gb|EDL97107.1| adenosine deaminase, RNA-specific, B1, isoform CRA_a [Rattus
norvegicus]
Length = 695
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 71 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAA 129
Query: 89 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSS 120
K ++ PN S+ + + D++S
Sbjct: 130 EKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 161
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 248 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPVLS 306
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 307 EGLQLHLPQVLADA 320
>gi|15529492|gb|AAL01303.1|AF403108_1 adenosine deaminase [Mus musculus]
gi|148699865|gb|EDL31812.1| adenosine deaminase, RNA-specific, B1, isoform CRA_c [Mus musculus]
Length = 677
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 53 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAA 111
Query: 89 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSS 120
K ++ PN S+ + + D++S
Sbjct: 112 EKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 143
Score = 37.7 bits (86), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 230 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPVLS 288
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 289 EGLQLHLPQVLADA 302
>gi|403271746|ref|XP_003927770.1| PREDICTED: double-stranded RNA-specific editase 1-like, partial
[Saimiri boliviensis boliviensis]
Length = 750
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 172 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAA 230
Query: 89 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQT 137
K ++ PN S+ + + D++S Q++ L + +T
Sbjct: 231 EKALRSFVQFPNASEAHLAMGRTLSVNTDFTSD--QADFPDTLFNGFET 277
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAY-----MRL-----KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A +RL ++P PS
Sbjct: 349 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLRLDQTPSRQPIPS 407
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 408 EGLQLHLPQVLADA 421
>gi|357501287|ref|XP_003620932.1| hypothetical protein MTR_6g092600 [Medicago truncatula]
gi|355495947|gb|AES77150.1| hypothetical protein MTR_6g092600 [Medicago truncatula]
Length = 75
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+Y N LQEL QK +Y LP Y T G H P F STV V F S + A + K ++
Sbjct: 1 MYTNKLQELCQKNSYPLPEYQTTHEGPLHNPLFSSTVTVKSISFTSPEPASTLKASQEFV 60
Query: 89 AKVAYMRL 96
A VA+
Sbjct: 61 AMVAFHHF 68
>gi|409400301|ref|ZP_11250411.1| ribonuclease III [Acidocella sp. MX-AZ02]
gi|409130686|gb|EKN00433.1| ribonuclease III [Acidocella sp. MX-AZ02]
Length = 223
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 32 KNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
K LQE A K LP+Y T +QSG SHAP FV V VG E + Q A +K+ AE AA+
Sbjct: 157 KTALQEWALKRGQILPLYETLEQSGPSHAPLFVVRVSVGVESATAQ-AGAKRAAEQEAAR 215
Query: 91 VAYMRL 96
+ +L
Sbjct: 216 LLLGQL 221
>gi|291613749|ref|YP_003523906.1| ribonuclease III [Sideroxydans lithotrophicus ES-1]
gi|291583861|gb|ADE11519.1| ribonuclease III [Sideroxydans lithotrophicus ES-1]
Length = 224
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 32 KNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVG--GEVFSGQGAKSKKQAEMSA 88
K +LQE Q ALP Y+ + GE+HA TFV T E+ G V G+G S++ AE A
Sbjct: 154 KTLLQEHLQSRKLALPQYHVAEIKGEAHAQTFVVTCEIAQLGLVSQGEGT-SRRIAEQIA 212
Query: 89 AKVAYMRLKE 98
A+ AY ++KE
Sbjct: 213 AERAYQQIKE 222
>gi|7669479|ref|NP_056649.1| double-stranded RNA-specific editase 1 isoform 3 [Homo sapiens]
gi|2039302|gb|AAC51242.1| dsRNA adenosine deaminase DRADA2c [Homo sapiens]
gi|119629766|gb|EAX09361.1| adenosine deaminase, RNA-specific, B1 (RED1 homolog rat), isoform
CRA_e [Homo sapiens]
Length = 714
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAA 135
Query: 89 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSS 120
K ++ PN S+ + + D++S
Sbjct: 136 EKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 37.0 bits (84), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALAAIFNLHLDQTPSRQPIPS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|332256664|ref|XP_003277436.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 5
[Nomascus leucogenys]
Length = 674
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPILS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|297287382|ref|XP_002803150.1| PREDICTED: double-stranded RNA-specific editase 1-like isoform 2
[Macaca mulatta]
Length = 740
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 116 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 173
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + D++S
Sbjct: 174 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 206
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 293 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 351
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 352 EGLQLHLPQVLADA 365
>gi|402862128|ref|XP_003895420.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 2 [Papio
anubis]
Length = 701
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|21954729|gb|AAM83100.1|AF525422_1 adenosine deaminase ADAR2 [Homo sapiens]
gi|23266659|gb|AAN10291.1| adenosine deaminase [Homo sapiens]
Length = 729
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 105 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 162
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + D++S
Sbjct: 163 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 195
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 282 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALAAIFNLHLDQTPSRQPIPS 340
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 341 EGLQLHLPQVLADA 354
>gi|119629762|gb|EAX09357.1| adenosine deaminase, RNA-specific, B1 (RED1 homolog rat), isoform
CRA_a [Homo sapiens]
Length = 729
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 105 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAA 163
Query: 89 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSS 120
K ++ PN S+ + + D++S
Sbjct: 164 EKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 195
Score = 37.0 bits (84), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 282 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALAAIFNLHLDQTPSRQPIPS 340
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 341 EGLQLHLPQVLADA 354
>gi|402862130|ref|XP_003895421.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 3 [Papio
anubis]
Length = 714
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAA 135
Query: 89 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSS 120
K ++ PN S+ + + D++S
Sbjct: 136 EKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|161377413|ref|NP_001104527.1| double-stranded RNA-specific editase 1 isoform 4 [Rattus
norvegicus]
gi|149043660|gb|EDL97111.1| adenosine deaminase, RNA-specific, B1, isoform CRA_e [Rattus
norvegicus]
Length = 677
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 53 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAA 111
Query: 89 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQT 137
K ++ PN S+ + + D++S Q++ L + +T
Sbjct: 112 EKALRSFVQFPNASEAHLAMGRTLSVNTDFTSD--QADFPDTLFNGFET 158
Score = 37.4 bits (85), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 230 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPVLS 288
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 289 EGLQLHLPQVLADA 302
>gi|119629763|gb|EAX09358.1| adenosine deaminase, RNA-specific, B1 (RED1 homolog rat), isoform
CRA_b [Homo sapiens]
Length = 700
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 37.4 bits (85), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALAAIFNLHLDQTPSRQPIPS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|24217145|ref|NP_714628.1| ribonuclease III [Leptospira interrogans serovar Lai str. 56601]
gi|45655649|ref|YP_003458.1| dsRNase III [Leptospira interrogans serovar Copenhageni str.
Fiocruz L1-130]
gi|386076104|ref|YP_005990293.1| ribonuclease 3 [Leptospira interrogans serovar Lai str. IPAV]
gi|417759749|ref|ZP_12407783.1| ribonuclease III [Leptospira interrogans str. 2002000624]
gi|417766447|ref|ZP_12414399.1| ribonuclease III [Leptospira interrogans serovar Bulgarica str.
Mallika]
gi|417772776|ref|ZP_12420664.1| ribonuclease III [Leptospira interrogans serovar Pomona str.
Pomona]
gi|417776508|ref|ZP_12424345.1| ribonuclease III [Leptospira interrogans str. 2002000621]
gi|417786880|ref|ZP_12434565.1| ribonuclease III [Leptospira interrogans str. C10069]
gi|418666248|ref|ZP_13227679.1| ribonuclease III [Leptospira interrogans serovar Pyrogenes str.
2006006960]
gi|418671381|ref|ZP_13232733.1| ribonuclease III [Leptospira interrogans str. 2002000623]
gi|418681884|ref|ZP_13243106.1| ribonuclease III [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|418691029|ref|ZP_13252136.1| ribonuclease III [Leptospira interrogans str. FPW2026]
gi|418704885|ref|ZP_13265752.1| ribonuclease III [Leptospira interrogans serovar Hebdomadis str.
R499]
gi|418710583|ref|ZP_13271353.1| ribonuclease III [Leptospira interrogans serovar Grippotyphosa str.
UI 08368]
gi|418712860|ref|ZP_13273589.1| ribonuclease III [Leptospira interrogans str. UI 08452]
gi|418725505|ref|ZP_13284123.1| ribonuclease III [Leptospira interrogans str. UI 12621]
gi|418733745|ref|ZP_13290856.1| ribonuclease III [Leptospira interrogans str. UI 12758]
gi|421086812|ref|ZP_15547660.1| ribonuclease III [Leptospira santarosai str. HAI1594]
gi|421103899|ref|ZP_15564495.1| ribonuclease III [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|421115968|ref|ZP_15576361.1| ribonuclease III [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|421119574|ref|ZP_15579894.1| ribonuclease III [Leptospira interrogans str. Brem 329]
gi|421128301|ref|ZP_15588516.1| ribonuclease III [Leptospira interrogans serovar Grippotyphosa str.
2006006986]
gi|421135834|ref|ZP_15595954.1| ribonuclease III [Leptospira interrogans serovar Grippotyphosa str.
Andaman]
gi|59798574|sp|Q75FW5.1|RNC_LEPIC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|59798588|sp|Q8EXX3.1|RNC_LEPIN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|24202183|gb|AAN51643.1| ribonuclease 3 [Leptospira interrogans serovar Lai str. 56601]
gi|45602620|gb|AAS72095.1| dsRNase III [Leptospira interrogans serovar Copenhageni str.
Fiocruz L1-130]
gi|353459766|gb|AER04310.1| ribonuclease 3 [Leptospira interrogans serovar Lai str. IPAV]
gi|400326401|gb|EJO78668.1| ribonuclease III [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|400351274|gb|EJP03514.1| ribonuclease III [Leptospira interrogans serovar Bulgarica str.
Mallika]
gi|400360065|gb|EJP16046.1| ribonuclease III [Leptospira interrogans str. FPW2026]
gi|409944497|gb|EKN90080.1| ribonuclease III [Leptospira interrogans str. 2002000624]
gi|409945453|gb|EKN95469.1| ribonuclease III [Leptospira interrogans serovar Pomona str.
Pomona]
gi|409949732|gb|EKO04265.1| ribonuclease III [Leptospira interrogans str. C10069]
gi|409961142|gb|EKO24889.1| ribonuclease III [Leptospira interrogans str. UI 12621]
gi|410012464|gb|EKO70562.1| ribonuclease III [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|410020139|gb|EKO86944.1| ribonuclease III [Leptospira interrogans serovar Grippotyphosa str.
Andaman]
gi|410347725|gb|EKO98598.1| ribonuclease III [Leptospira interrogans str. Brem 329]
gi|410366380|gb|EKP21772.1| ribonuclease III [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410430841|gb|EKP75204.1| ribonuclease III [Leptospira santarosai str. HAI1594]
gi|410434026|gb|EKP83167.1| ribonuclease III [Leptospira interrogans serovar Grippotyphosa str.
2006006986]
gi|410573717|gb|EKQ36762.1| ribonuclease III [Leptospira interrogans str. 2002000621]
gi|410581642|gb|EKQ49451.1| ribonuclease III [Leptospira interrogans str. 2002000623]
gi|410758195|gb|EKR19794.1| ribonuclease III [Leptospira interrogans serovar Pyrogenes str.
2006006960]
gi|410765498|gb|EKR36198.1| ribonuclease III [Leptospira interrogans serovar Hebdomadis str.
R499]
gi|410769172|gb|EKR44415.1| ribonuclease III [Leptospira interrogans serovar Grippotyphosa str.
UI 08368]
gi|410772926|gb|EKR52958.1| ribonuclease III [Leptospira interrogans str. UI 12758]
gi|410790629|gb|EKR84321.1| ribonuclease III [Leptospira interrogans str. UI 08452]
gi|455669787|gb|EMF34845.1| ribonuclease III [Leptospira interrogans serovar Pomona str. Fox
32256]
gi|456825599|gb|EMF73977.1| ribonuclease III [Leptospira interrogans serovar Canicola str.
LT1962]
gi|456966676|gb|EMG08210.1| ribonuclease III [Leptospira interrogans serovar Grippotyphosa str.
LT2186]
gi|456983734|gb|EMG19964.1| ribonuclease III [Leptospira interrogans serovar Copenhageni str.
LT2050]
Length = 247
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK LQE +QK LP+Y TK +SG HA TF V + + + SKK AE +AA
Sbjct: 177 YKTQLQEYSQKHFKILPIYRTKSESGPDHAKTFQVVVRIRDQWEASGSGVSKKSAEQNAA 236
Query: 90 KVAYMRLKE 98
K Y R+++
Sbjct: 237 KELYNRIRK 245
>gi|242069683|ref|XP_002450118.1| hypothetical protein SORBIDRAFT_05g000800 [Sorghum bicolor]
gi|241935961|gb|EES09106.1| hypothetical protein SORBIDRAFT_05g000800 [Sorghum bicolor]
Length = 118
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQA 84
++ ++K+ LQE AQK Y+T + G SH P F STV V + S G S+K A
Sbjct: 28 ENCYVFKSRLQEYAQKVGITTLEYHTLKEGPSHEPVFKSTVVVNNTRYESLPGFFSRKAA 87
Query: 85 EMSAAKVAYMRLKEPNPSQGPALVS 109
E SAA+VA M + PA+VS
Sbjct: 88 EQSAAEVALMEIAMSETRGIPAVVS 112
>gi|161377411|ref|NP_001104526.1| double-stranded RNA-specific editase 1 isoform 3 [Rattus
norvegicus]
gi|149043659|gb|EDL97110.1| adenosine deaminase, RNA-specific, B1, isoform CRA_d [Rattus
norvegicus]
Length = 687
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 53 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAA 111
Query: 89 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSS 120
K ++ PN S+ + + D++S
Sbjct: 112 EKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 143
Score = 37.4 bits (85), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 230 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPVLS 288
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 289 EGLQLHLPQVLADA 302
>gi|4501919|ref|NP_001103.1| double-stranded RNA-specific editase 1 isoform 1 [Homo sapiens]
gi|1707504|emb|CAA67762.1| double-stranded RNA-specific editase [Homo sapiens]
gi|1766054|gb|AAB61686.1| double stranded RNA-specific editase 1 hRED1-S [Homo sapiens]
gi|2039298|gb|AAC51240.1| dsRNA adenosine deaminase DRADA2a [Homo sapiens]
gi|71274091|dbj|BAE16326.1| adenosine deaminase acting on RNA type2a [Homo sapiens]
gi|71274093|dbj|BAE16327.1| adenosine deaminase acting on RNA type2a [Homo sapiens]
gi|71274095|dbj|BAE16328.1| adenosine deaminase acting on RNA type2a [Homo sapiens]
gi|119629764|gb|EAX09359.1| adenosine deaminase, RNA-specific, B1 (RED1 homolog rat), isoform
CRA_c [Homo sapiens]
Length = 701
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALAAIFNLHLDQTPSRQPIPS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|395752918|ref|XP_003779505.1| PREDICTED: double-stranded RNA-specific editase 1 [Pongo abelii]
Length = 729
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 105 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 162
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + D++S
Sbjct: 163 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 195
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 282 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 340
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 341 EGLQLHLPQVLADA 354
>gi|41351285|gb|AAH65545.1| Adenosine deaminase, RNA-specific, B1 (RED1 homolog rat) [Homo
sapiens]
Length = 701
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAA 135
Query: 89 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSS 120
K ++ PN S+ + + D++S
Sbjct: 136 EKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 37.0 bits (84), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALAAIFNLHLDQTPSRQPIPS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|2114493|gb|AAB58300.1| RNA editase [Homo sapiens]
Length = 741
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAA 135
Query: 89 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSS 120
K ++ PN S+ + + D++S
Sbjct: 136 EKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 37.0 bits (84), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALAAIFNLHLDQTPSRQPIPS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|47226805|emb|CAG06647.1| unnamed protein product [Tetraodon nigroviridis]
Length = 678
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G++F G G +KK+A+++A
Sbjct: 65 VLPKNALMQLNEIKP-GLQYKLLSQTGPVHAPVFVMSVEVNGQLFEGSGP-TKKKAKLNA 122
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + D++S
Sbjct: 123 AEKALRSFVQFPNASEAHMAMGRTLSVHTDFTS 155
>gi|239985464|ref|NP_001155267.1| RNA-specific adenosine deaminase B1 isoform 4 [Pan troglodytes]
Length = 674
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|7669477|ref|NP_056648.1| double-stranded RNA-specific editase 1 isoform 2 [Homo sapiens]
gi|2829669|sp|P78563.1|RED1_HUMAN RecName: Full=Double-stranded RNA-specific editase 1; AltName:
Full=RNA-editing deaminase 1; AltName: Full=RNA-editing
enzyme 1; AltName: Full=dsRNA adenosine deaminase
gi|1707502|emb|CAA67611.1| double-stranded RNA-specific editase [Homo sapiens]
gi|1766056|gb|AAB61687.1| double stranded RNA-specific editase 1 hRED1-L [Homo sapiens]
gi|2039300|gb|AAC51241.1| dsRNA adenosine deaminase DRADA2b [Homo sapiens]
gi|7717441|emb|CAB90493.1| human dsRNA adenosine deaminase DRADA2b, EC 3.5 [Homo sapiens]
gi|119629765|gb|EAX09360.1| adenosine deaminase, RNA-specific, B1 (RED1 homolog rat), isoform
CRA_d [Homo sapiens]
Length = 741
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAA 135
Query: 89 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSS 120
K ++ PN S+ + + D++S
Sbjct: 136 EKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 37.0 bits (84), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALAAIFNLHLDQTPSRQPIPS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|426393327|ref|XP_004062978.1| PREDICTED: double-stranded RNA-specific editase 1 [Gorilla gorilla
gorilla]
Length = 843
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 116 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAA 174
Query: 89 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSS 120
K ++ PN S+ + + D++S
Sbjct: 175 EKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 206
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 293 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 351
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 352 EGLQLHLPQVLADA 365
>gi|418699115|ref|ZP_13260082.1| ribonuclease III [Leptospira interrogans serovar Bataviae str.
L1111]
gi|410761975|gb|EKR28146.1| ribonuclease III [Leptospira interrogans serovar Bataviae str.
L1111]
Length = 247
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK LQE +QK LP+Y TK +SG HA TF V + + + SKK AE +AA
Sbjct: 177 YKTQLQEYSQKHFKILPIYRTKSESGPDHAKTFQVVVRIRDQWEASGSGVSKKSAEQNAA 236
Query: 90 KVAYMRLKE 98
K Y R+++
Sbjct: 237 KELYNRIRK 245
>gi|395752914|ref|XP_002830837.2| PREDICTED: double-stranded RNA-specific editase 1 isoform 2 [Pongo
abelii]
Length = 701
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|291414564|ref|XP_002723529.1| PREDICTED: RNA-specific adenosine deaminase B1 isoform 1
[Oryctolagus cuniculus]
Length = 701
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 5/114 (4%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+ F G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQAFEGSGP-TKKKAKLHA 134
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGRL 141
A+ A + PN S+ + + D++S Q++ L + +T+ R+
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSD--QADFPDTLFNGFETSDRV 186
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPIPS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|239985458|ref|NP_001122104.2| RNA-specific adenosine deaminase B1 isoform 1 [Pan troglodytes]
gi|397506713|ref|XP_003823864.1| PREDICTED: double-stranded RNA-specific editase 1-like isoform 1
[Pan paniscus]
gi|410215246|gb|JAA04842.1| adenosine deaminase, RNA-specific, B1 [Pan troglodytes]
gi|410266404|gb|JAA21168.1| adenosine deaminase, RNA-specific, B1 [Pan troglodytes]
gi|410299376|gb|JAA28288.1| adenosine deaminase, RNA-specific, B1 [Pan troglodytes]
gi|410335023|gb|JAA36458.1| adenosine deaminase, RNA-specific, B1 [Pan troglodytes]
Length = 701
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|397506717|ref|XP_003823866.1| PREDICTED: double-stranded RNA-specific editase 1-like isoform 3
[Pan paniscus]
Length = 729
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 105 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 162
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + D++S
Sbjct: 163 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 195
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 282 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 340
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 341 EGLQLHLPQVLADA 354
>gi|395752916|ref|XP_003779504.1| PREDICTED: double-stranded RNA-specific editase 1 [Pongo abelii]
Length = 741
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|402862126|ref|XP_003895419.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 1 [Papio
anubis]
gi|355560227|gb|EHH16913.1| hypothetical protein EGK_13170 [Macaca mulatta]
Length = 741
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAA 135
Query: 89 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSS 120
K ++ PN S+ + + D++S
Sbjct: 136 EKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|291241464|ref|XP_002740631.1| PREDICTED: RNA-specific adenosine deaminase B1-like [Saccoglossus
kowalevskii]
Length = 713
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + L QSG HAPTFV +VEV G++F G G KK +A
Sbjct: 92 VLPKNALMQLNEIRP-GLQFKFVSQSGPVHAPTFVMSVEVNGQMFEGIGTTKKKAKLQAA 150
Query: 89 AKVAYMRLKEPNPSQ-----GPALVSPDIQAQA 116
K ++ PN S+ G +++ D + A
Sbjct: 151 EKALRSFVQFPNASEAHRAMGRHIITSDFTSDA 183
>gi|354476792|ref|XP_003500607.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 1
[Cricetulus griseus]
gi|344241941|gb|EGV98044.1| Double-stranded RNA-specific editase 1 [Cricetulus griseus]
Length = 701
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G++F G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQIFEGSGP-TKKKAKLHA 134
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 38.1 bits (87), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPVLS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|331698524|ref|YP_004334763.1| ribonuclease 3 [Pseudonocardia dioxanivorans CB1190]
gi|326953213|gb|AEA26910.1| Ribonuclease 3 [Pseudonocardia dioxanivorans CB1190]
Length = 238
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGG-EVFSGQGAKSKKQAEMSAA 89
+K LQEL +P Y + G H TF +T VGG E+ SG G ++KK+AE AA
Sbjct: 161 WKTSLQELTAAAELGVPEYRITEDGPDHLKTFTATAVVGGRELGSGDG-RTKKEAEQKAA 219
Query: 90 KVAYMRL-KEPNPSQGPAL 107
+A+ L E + S G A+
Sbjct: 220 ALAWRTLSAEADGSVGTAV 238
>gi|239985460|ref|NP_001155265.1| RNA-specific adenosine deaminase B1 isoform 3 [Pan troglodytes]
Length = 714
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|156401537|ref|XP_001639347.1| predicted protein [Nematostella vectensis]
gi|156226475|gb|EDO47284.1| predicted protein [Nematostella vectensis]
Length = 880
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
+ YKN LQE K P+Y++K+ FV + V G F +G ++KK +E SA
Sbjct: 808 ISYKNQLQEYCDKNKKGAPIYDSKKVELQVDGKFVCDLLVDGFTFRAKGCQTKKGSEQSA 867
Query: 89 AKVAYMRL 96
A++A R
Sbjct: 868 ARIALQRF 875
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 25 EDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQ 83
+D+ + +KN LQE AQK+ +P Y +K++ +STV + F G K KKQ
Sbjct: 578 DDNFISFKNSLQEFAQKKGIPVPRYFSKKAQIG----MMSTVVISDHKFHSTGLHKDKKQ 633
Query: 84 AEMSAAKVAYMRL 96
+E +AA A +L
Sbjct: 634 SEQNAAWFALKKL 646
>gi|22506829|gb|AAM97654.1| adenosine deaminase ADAR2 variant [Homo sapiens]
Length = 701
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 37.4 bits (85), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALAAIFNLHLDQTPSRQPIPS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|355747317|gb|EHH51814.1| hypothetical protein EGM_12105 [Macaca fascicularis]
Length = 741
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|294815350|ref|ZP_06773993.1| Ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
gi|326443704|ref|ZP_08218438.1| ribonuclease III [Streptomyces clavuligerus ATCC 27064]
gi|294327949|gb|EFG09592.1| Ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
Length = 303
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 177 WKTSLQELTASEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 236
Query: 91 VAYMRLK 97
A+ ++
Sbjct: 237 SAWREIR 243
>gi|74209845|dbj|BAE23623.1| unnamed protein product [Mus musculus]
Length = 376
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 37.0 bits (84), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPVLS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|390478277|ref|XP_003735462.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 2
[Callithrix jacchus]
Length = 701
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQT 137
A+ A + PN S+ + + D++S Q++ L + +T
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSD--QADFPDTLFNGFET 182
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAY-----MRL-----KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A +RL ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLRLDQTPSRQPIPS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|421881985|ref|ZP_16313281.1| Ribonuclease III [Helicobacter bizzozeronii CCUG 35545]
gi|375315857|emb|CCF81277.1| Ribonuclease III [Helicobacter bizzozeronii CCUG 35545]
Length = 223
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK+ LQEL Q +P Y K +SG HA F + + +++ A SKKQAE A
Sbjct: 153 YKSALQELTQARFKVVPTYMLKNESGPDHAKQFEMQIFILNKLYGTCKASSKKQAEQLCA 212
Query: 90 KVAYMRLKE 98
+VAY +LK+
Sbjct: 213 QVAYEQLKQ 221
>gi|432912051|ref|XP_004078843.1| PREDICTED: double-stranded RNA-specific editase B2-like [Oryzias
latipes]
Length = 776
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 10/123 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAY--------ALPVYNTKQSGESHAPT 61
R ++R Q + + ++ K + QK A L +SG HAP
Sbjct: 124 RELKRKQSVLFGKDHHQSTLACKRSAWAVTQKNALVHLNELKPGLRYEIMSKSGPLHAPV 183
Query: 62 FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMR-LKEPNPSQGPALVSPDIQAQADYSS 120
F VEV G F G G+ +KKQA+M AA++A ++ PN SQ A++ A D+++
Sbjct: 184 FSVGVEVNGFHFEGFGS-TKKQAKMRAAELALQSFIQFPNASQAHAVMGNFTNANVDFAA 242
Query: 121 SSL 123
L
Sbjct: 243 DKL 245
>gi|379710093|ref|YP_005265298.1| RNase III [Nocardia cyriacigeorgica GUH-2]
gi|374847592|emb|CCF64662.1| RNase III [Nocardia cyriacigeorgica GUH-2]
Length = 240
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSAA 89
+K LQEL + +P Y +G H F +T +GG+ + GQG +SKK+AE AA
Sbjct: 171 WKTSLQELTAERGLGVPSYEITSTGPDHDKEFTATTVIGGQAY-GQGVGRSKKEAEQKAA 229
Query: 90 KVAYMRL 96
AY L
Sbjct: 230 GAAYQAL 236
>gi|239985462|ref|NP_001155266.1| RNA-specific adenosine deaminase B1 isoform 2 [Pan troglodytes]
gi|397506715|ref|XP_003823865.1| PREDICTED: double-stranded RNA-specific editase 1-like isoform 2
[Pan paniscus]
Length = 741
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAA 135
Query: 89 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSS 120
K ++ PN S+ + + D++S
Sbjct: 136 EKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|455651571|gb|EMF30297.1| ribonuclease III [Streptomyces gancidicus BKS 13-15]
Length = 272
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 170 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 229
Query: 91 VAYMRLK 97
A+ +K
Sbjct: 230 SAWRSIK 236
>gi|380792411|gb|AFE68081.1| double-stranded RNA-specific editase 1 isoform 2, partial [Macaca
mulatta]
Length = 475
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|54026155|ref|YP_120397.1| ribonuclease III [Nocardia farcinica IFM 10152]
gi|81373706|sp|Q5YS08.1|RNC_NOCFA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|54017663|dbj|BAD59033.1| putative RNase III [Nocardia farcinica IFM 10152]
Length = 240
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSAA 89
+K LQEL + +P Y +G H F +T +GG + GQG +SKK+AE AA
Sbjct: 171 WKTSLQELTAERGLGVPSYEISSTGPDHDKEFTATTVIGGRAY-GQGVGRSKKEAEQKAA 229
Query: 90 KVAYMRL 96
AY L
Sbjct: 230 GAAYQAL 236
>gi|254392460|ref|ZP_05007640.1| ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
gi|197706127|gb|EDY51939.1| ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
Length = 300
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 174 WKTSLQELTASEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 91 VAYMRLK 97
A+ ++
Sbjct: 234 SAWREIR 240
>gi|390478279|ref|XP_002761540.2| PREDICTED: double-stranded RNA-specific editase 1 isoform 1
[Callithrix jacchus]
Length = 782
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 116 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAA 174
Query: 89 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQT 137
K ++ PN S+ + + D++S Q++ L + +T
Sbjct: 175 EKALRSFVQFPNASEAHLAMGRTLSVNTDFTSD--QADFPDTLFNGFET 221
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAY-----MRL-----KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A +RL ++P PS
Sbjct: 293 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLRLDQTPSRQPIPS 351
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 352 EGLQLHLPQVLADA 365
>gi|386852253|ref|YP_006270266.1| ribonuclease III [Actinoplanes sp. SE50/110]
gi|359839757|gb|AEV88198.1| ribonuclease III [Actinoplanes sp. SE50/110]
Length = 245
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 38/74 (51%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL +P Y + SG HA TF + V V G + G +SKKQAE AA
Sbjct: 167 WKTSLQELTAALGLGVPDYVIEDSGPDHAKTFTAWVVVAGVRYGGSDGRSKKQAEQRAAA 226
Query: 91 VAYMRLKEPNPSQG 104
A+ L E + + G
Sbjct: 227 AAWRMLTERSEADG 240
>gi|291414566|ref|XP_002723530.1| PREDICTED: RNA-specific adenosine deaminase B1 isoform 2
[Oryctolagus cuniculus]
Length = 715
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 5/114 (4%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+ F G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQAFEGSGP-TKKKAKLHA 134
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGRL 141
A+ A + PN S+ + + D++S Q++ L + +T+ R+
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSD--QADFPDTLFNGFETSDRV 186
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPIPS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|295696065|ref|YP_003589303.1| ribonuclease III [Kyrpidia tusciae DSM 2912]
gi|295411667|gb|ADG06159.1| ribonuclease III [Kyrpidia tusciae DSM 2912]
Length = 231
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 11 SMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVG 69
++QR Q ++ DD YK +LQE QK Y T + G +H FV+ V +G
Sbjct: 148 ALQREQAPIL-----DD---YKTMLQEHVQKVGLGPLTYRITDERGPAHHREFVAQVWIG 199
Query: 70 GEVFSGQGAKSKKQAEMSAAKVAYMRL 96
G+ + +SKK+AE AA+ A M+L
Sbjct: 200 GQAYGEGSGRSKKEAEQHAAREALMKL 226
>gi|74136125|ref|NP_001027924.1| adenosine deaminase ADAR2-a variant [Takifugu rubripes]
gi|22506831|gb|AAM97655.1| adenosine deaminase ADAR2-a variant [Takifugu rubripes]
Length = 694
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
+L KN L +L + + L Q+G HAP FV +VEV G++F G G +KK+A+++A
Sbjct: 67 ILPKNALMQLNEIKP-GLQYKLLSQTGPVHAPVFVMSVEVNGQLFEGSGP-TKKKAKLNA 124
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + D++S
Sbjct: 125 AEKALRSFVQFPNASEAHMAMGRTLSVHTDFTS 157
>gi|7798624|gb|AAF69766.1| double-stranded RNA adenosine deaminase RED1A [Takifugu rubripes]
Length = 692
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
+L KN L +L + + L Q+G HAP FV +VEV G++F G G +KK+A+++A
Sbjct: 65 ILPKNALMQLNEIKP-GLQYKLLSQTGPVHAPVFVMSVEVNGQLFEGSGP-TKKKAKLNA 122
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + D++S
Sbjct: 123 AEKALRSFVQFPNASEAHMAMGRTLSVHTDFTS 155
>gi|380302783|ref|ZP_09852476.1| RNAse III [Brachybacterium squillarum M-6-3]
Length = 250
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K+ LQE+A E+ A P Y +SG H TF +TV V G V + SKK AE++AA+
Sbjct: 174 FKSRLQEIA-AESGATPAYRLSESGLEHDKTFTATVTVAGVVTASGEGHSKKDAELAAAQ 232
Query: 91 VA 92
A
Sbjct: 233 TA 234
>gi|238063283|ref|ZP_04607992.1| ribonuclease III [Micromonospora sp. ATCC 39149]
gi|237885094|gb|EEP73922.1| ribonuclease III [Micromonospora sp. ATCC 39149]
Length = 296
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL +P Y + +G H TF + V V G + G +SKK+AE AA+
Sbjct: 168 WKTSLQELTAALGLGVPEYRIEGTGPDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAAE 227
Query: 91 VAYMRLKE 98
A+ L E
Sbjct: 228 SAWRELTE 235
>gi|45383650|ref|NP_989571.1| RNA-specific adenosine deaminase B1 [Gallus gallus]
gi|161702982|ref|NP_001104544.1| RNA-specific adenosine deaminase B1 [Gallus gallus]
gi|15529498|gb|AAL01306.1|AF403115_1 adenosine deaminase [Gallus gallus]
gi|15529506|gb|AAL01310.1| adenosine deaminase [Gallus gallus]
gi|53127005|emb|CAG31002.1| hypothetical protein RCJMB04_1i12 [Gallus gallus]
Length = 701
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV VEV G+VF G G +KK+A++ A
Sbjct: 78 VLPKNALMQLNEIKP-GLQYKLLSQTGPVHAPVFVMAVEVNGQVFEGSGP-TKKKAKLHA 135
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + D++S
Sbjct: 136 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 168
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA FV V V G+ F G G ++KK A+ AA+ A L ++P PS
Sbjct: 255 ESGESHAKNFVMAVAVDGQTFEGSG-RNKKLAKARAAQSALASLFNMQLDQTPSRQPIPS 313
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 314 EGLQLHLPQVLADA 327
>gi|444513444|gb|ELV10323.1| Double-stranded RNA-specific editase 1 [Tupaia chinensis]
Length = 676
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 53 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 110
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + D++S
Sbjct: 111 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 143
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 230 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPIPS 288
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 289 EGLQLHLPQVLADA 302
>gi|15529502|gb|AAL01308.1|AF403117_1 adenosine deaminase [Gallus gallus]
gi|15529510|gb|AAL01312.1| adenosine deaminase [Gallus gallus]
Length = 680
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV VEV G+VF G G KK +A
Sbjct: 57 VLPKNALMQLNEIKP-GLQYKLLSQTGPVHAPVFVMAVEVNGQVFEGSGPTKKKAKLHAA 115
Query: 89 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSS 120
K ++ PN S+ + + D++S
Sbjct: 116 EKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 147
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA FV V V G+ F G G ++KK A+ AA+ A L ++P PS
Sbjct: 234 ESGESHAKNFVMAVAVDGQTFEGSG-RNKKLAKARAAQSALASLFNMQLDQTPSRQPIPS 292
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 293 EGLQLHLPQVLADA 306
>gi|15529496|gb|AAL01305.1|AF403114_1 adenosine deaminase [Gallus gallus]
gi|15529504|gb|AAL01309.1| adenosine deaminase [Gallus gallus]
Length = 524
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV VEV G+VF G G +KK+A++ A
Sbjct: 78 VLPKNALMQLNEIKP-GLQYKLLSQTGPVHAPVFVMAVEVNGQVFEGSGP-TKKKAKLHA 135
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + D++S
Sbjct: 136 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 168
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA FV V V G+ F G G ++KK A+ AA+ A L ++P PS
Sbjct: 255 ESGESHAKNFVMAVAVDGQTFEGSG-RNKKLAKARAAQSALASLFNMQLDQTPSRQPIPS 313
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 314 EGLQLHLPQVLADA 327
>gi|426219531|ref|XP_004003975.1| PREDICTED: double-stranded RNA-specific editase 1 [Ovis aries]
Length = 1316
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
L KN L +L + + L Q+G HAP F+ +VEV G+VF G G KK +A
Sbjct: 687 LPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFLMSVEVNGQVFEGSGPTKKKAKLHAAE 745
Query: 90 KVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGR 140
K ++ PN S+ + + AD++S Q++ L + +T R
Sbjct: 746 KALRSFVQFPNASEAHLAMGRSLSTNADFTSD--QADFPDALFNGFETPDR 794
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 869 ESGESHAKNFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 927
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 928 EGLQLHLPQVLADA 941
>gi|449507466|ref|XP_002192699.2| PREDICTED: double-stranded RNA-specific editase 1 [Taeniopygia
guttata]
Length = 699
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV VEV G+VF G G +KK+A++ A
Sbjct: 76 VLPKNALMQLNEIKP-GLQYKLLSQTGPVHAPMFVMAVEVNGQVFEGSGP-TKKKAKLHA 133
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + D++S
Sbjct: 134 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 166
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA F+ V V G+ F G G ++KK A+ AA+ A L ++P PS
Sbjct: 253 ESGESHAKNFIMAVAVDGQTFEGSG-RNKKLAKARAAQSALASLFNMQLDQTPSRQPIPS 311
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 312 EGLQLHLPQVLADA 325
>gi|15529500|gb|AAL01307.1|AF403116_1 adenosine deaminase [Gallus gallus]
gi|15529508|gb|AAL01311.1|AF403120_1 adenosine deaminase [Gallus gallus]
Length = 503
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV VEV G+VF G G +KK+A++ A
Sbjct: 57 VLPKNALMQLNEIKP-GLQYKLLSQTGPVHAPVFVMAVEVNGQVFEGSGP-TKKKAKLHA 114
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQT 137
A+ A + PN S+ + + D++S Q++ L + +T
Sbjct: 115 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSD--QADFPDTLFNGFET 162
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA FV V V G+ F G G ++KK A+ AA+ A L ++P PS
Sbjct: 234 ESGESHAKNFVMAVAVDGQTFEGSG-RNKKLAKARAAQSALASLFNMQLDQTPSRQPIPS 292
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 293 EGLQLHLPQVLADA 306
>gi|148230009|ref|NP_001088561.1| adenosine deaminase, RNA-specific, B1 [Xenopus laevis]
gi|54648473|gb|AAH84960.1| LOC495438 protein [Xenopus laevis]
Length = 699
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP F+ TVEV G+ F G G +KK+A+++A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYKLISQTGPVHAPVFIMTVEVNGQGFEGSGP-TKKKAKLNA 134
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA FV +V V E F G G ++KK A+ AA+ A L ++P PS
Sbjct: 253 ESGESHAKNFVMSVTVDNETFEGSG-RNKKLAKARAAQSALASLFNMHLDQTPSRQPIPS 311
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 312 EGLQLHLPQVLADA 325
>gi|296490897|tpg|DAA33010.1| TPA: adenosine deaminase, RNA-specific, B1 [Bos taurus]
Length = 748
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
L KN L +L + + L Q+G HAP F+ +VEV G+VF G G KK +A
Sbjct: 78 LPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFLMSVEVNGQVFEGSGPTKKKAKLHAAE 136
Query: 90 KVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGR 140
K ++ PN S+ + + AD++S Q++ L + +T R
Sbjct: 137 KALRSFVQFPNASEAHLAMGRSLSTNADFTSD--QADFPDALFNGFETPDR 185
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKNFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|310689634|pdb|2L3J|A Chain A, The Solution Structure Of The Adar2 Dsrbm-Rna Complex
Reveals A Sequence-Specific Read Out Of The Minor Groove
Length = 236
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 4 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSG-PTKKKAKLHA 61
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQT 137
A+ A + PN S+ + + D++S Q++ L + +T
Sbjct: 62 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSD--QADFPDTLFNGFET 109
>gi|189219126|ref|YP_001939767.1| Ribonuclease III [Methylacidiphilum infernorum V4]
gi|189185984|gb|ACD83169.1| Ribonuclease III [Methylacidiphilum infernorum V4]
Length = 247
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 19 MMFTNQEDDSVLYKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQG 77
M F E+ K +LQE QK+ LP+Y +SGE+H + V +V
Sbjct: 156 MRFVEHENS----KGLLQEFLQKKGTELPIYRIVLESGEAHNKWYEVEVSWKNQVLGKGS 211
Query: 78 AKSKKQAEMSAAKVAYMRL 96
KSKK+AE+ AAK A+ +L
Sbjct: 212 GKSKKEAELRAAKEAFEKL 230
>gi|116331646|ref|YP_801364.1| ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
str. JB197]
gi|418720931|ref|ZP_13280119.1| ribonuclease III [Leptospira borgpetersenii str. UI 09149]
gi|418735079|ref|ZP_13291491.1| ribonuclease III [Leptospira borgpetersenii serovar Castellonis
str. 200801910]
gi|421095924|ref|ZP_15556632.1| ribonuclease III [Leptospira borgpetersenii str. 200801926]
gi|122280610|sp|Q04R64.1|RNC_LEPBJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|116125335|gb|ABJ76606.1| Ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
str. JB197]
gi|410361339|gb|EKP12384.1| ribonuclease III [Leptospira borgpetersenii str. 200801926]
gi|410742410|gb|EKQ91158.1| ribonuclease III [Leptospira borgpetersenii str. UI 09149]
gi|410749335|gb|EKR02227.1| ribonuclease III [Leptospira borgpetersenii serovar Castellonis
str. 200801910]
gi|456886971|gb|EMF98072.1| ribonuclease III [Leptospira borgpetersenii str. 200701203]
Length = 247
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 31 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEV-FSGQGAKSKKQAEMSA 88
YK LQE +QK LPVY K +SG H+ TF +V + + SG GA SKK AE +A
Sbjct: 177 YKTQLQEYSQKHFKTLPVYRMKGESGPDHSKTFQVSVRIRDQWEASGYGA-SKKIAEQNA 235
Query: 89 AKVAYMRLK 97
AK Y+R++
Sbjct: 236 AKELYIRIR 244
>gi|358410640|ref|XP_002702377.2| PREDICTED: double-stranded RNA-specific editase 1 [Bos taurus]
gi|359062794|ref|XP_002685172.2| PREDICTED: double-stranded RNA-specific editase 1 [Bos taurus]
Length = 701
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
L KN L +L + + L Q+G HAP F+ +VEV G+VF G G KK +A
Sbjct: 78 LPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFLMSVEVNGQVFEGSGPTKKKAKLHAAE 136
Query: 90 KVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGR 140
K ++ PN S+ + + AD++S Q++ L + +T R
Sbjct: 137 KALRSFVQFPNASEAHLAMGRSLSTNADFTSD--QADFPDALFNGFETPDR 185
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKNFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|302558162|ref|ZP_07310504.1| ribonuclease III [Streptomyces griseoflavus Tu4000]
gi|302475780|gb|EFL38873.1| ribonuclease III [Streptomyces griseoflavus Tu4000]
Length = 272
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 170 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 229
Query: 91 VAYMRLK 97
A+ ++
Sbjct: 230 SAWRSIR 236
>gi|302537165|ref|ZP_07289507.1| ribonuclease III [Streptomyces sp. C]
gi|302446060|gb|EFL17876.1| ribonuclease III [Streptomyces sp. C]
Length = 273
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 174 WKTSLQELTAAEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 91 VAYMRLK 97
A+ ++
Sbjct: 234 SAWRGIR 240
>gi|227500106|ref|ZP_03930177.1| ribonuclease III [Anaerococcus tetradius ATCC 35098]
gi|227217821|gb|EEI83118.1| ribonuclease III [Anaerococcus tetradius ATCC 35098]
Length = 239
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 26 DDSVL--YKNVLQELAQ-KEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKK 82
DDS+ YK LQE K+ L TK+ G H+ TF V++G ++ + K+KK
Sbjct: 161 DDSIFNDYKTKLQEYHNAKDKKILKYELTKEEGPEHSKTFTMAVKLGNKILAYGVGKNKK 220
Query: 83 QAEMSAAKVAYMRLKEPN 100
QAE AAK A+ ++ + N
Sbjct: 221 QAEQMAAKAAFEKINKKN 238
>gi|254383289|ref|ZP_04998642.1| ribonuclease 3 [Streptomyces sp. Mg1]
gi|194342187|gb|EDX23153.1| ribonuclease 3 [Streptomyces sp. Mg1]
Length = 277
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 174 WKTSLQELTAAEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 91 VAYMRLK 97
A+ ++
Sbjct: 234 SAWRGIR 240
>gi|440696029|ref|ZP_20878532.1| ribonuclease III [Streptomyces turgidiscabies Car8]
gi|440281787|gb|ELP69332.1| ribonuclease III [Streptomyces turgidiscabies Car8]
Length = 280
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 174 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 91 VAYMRLK 97
A+ ++
Sbjct: 234 SAWRSIR 240
>gi|398338382|ref|ZP_10523085.1| ribonuclease III [Leptospira kirschneri serovar Bim str. 1051]
Length = 285
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK LQE +QK LP+Y TK +SG HA TF V + + + SKK AE +AA
Sbjct: 177 YKTQLQEYSQKHFKILPLYRTKSESGPDHAKTFQVVVRIRDQWEATGSGVSKKSAEQNAA 236
Query: 90 KVAYMRLKE 98
K Y R+++
Sbjct: 237 KELYNRIRK 245
>gi|290957120|ref|YP_003488302.1| ribonuclease III [Streptomyces scabiei 87.22]
gi|260646646|emb|CBG69743.1| putative ribonuclease III [Streptomyces scabiei 87.22]
Length = 272
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 175 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 234
Query: 91 VAYMRLK 97
A+ ++
Sbjct: 235 SAWRAIR 241
>gi|150399590|ref|YP_001323357.1| ribonuclease III [Methanococcus vannielii SB]
gi|150012293|gb|ABR54745.1| Ribonuclease III [Methanococcus vannielii SB]
Length = 227
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
YK LQE+ Q E + ++ GE H F+ V++G ++ S KSKK AE AAK
Sbjct: 159 YKTKLQEMIQSENKTVRYILLEELGEPHDKEFIVAVKIGRKIISKGVGKSKKDAERQAAK 218
Query: 91 VAYMRLKEP 99
+A ++L++
Sbjct: 219 IALLKLEKK 227
>gi|365861190|ref|ZP_09400967.1| ribonuclease III [Streptomyces sp. W007]
gi|364009341|gb|EHM30304.1| ribonuclease III [Streptomyces sp. W007]
Length = 238
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E+ +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 138 WKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 197
Query: 91 VAYMRL 96
A+ +
Sbjct: 198 SAWREI 203
>gi|440903429|gb|ELR54089.1| Double-stranded RNA-specific editase 1, partial [Bos grunniens
mutus]
Length = 745
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 5/112 (4%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
L KN L +L + + L Q+G HAP F+ +VEV G+VF G G +KK+A++ AA
Sbjct: 123 LPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFLMSVEVNGQVFEGSGP-TKKKAKLHAA 180
Query: 90 KVAYMRLKE-PNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGR 140
+ A + PN S+ + + AD++S Q++ L + +T R
Sbjct: 181 EKALRSFVQFPNASEAHLAMGRSLSTNADFTSD--QADFPDALFNGFETPDR 230
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 299 ESGESHAKNFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 357
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 358 EGLQLHLPQVLADA 371
>gi|289768866|ref|ZP_06528244.1| ribonuclease III [Streptomyces lividans TK24]
gi|418472126|ref|ZP_13041896.1| ribonuclease III [Streptomyces coelicoflavus ZG0656]
gi|384872625|sp|Q9ZBQ7.2|RNC_STRCO RecName: Full=Ribonuclease 3; AltName: Full=Antibiotic biosynthesis
protein B; Short=AbsB; AltName: Full=Ribonuclease III;
Short=RNase III
gi|289699065|gb|EFD66494.1| ribonuclease III [Streptomyces lividans TK24]
gi|371547286|gb|EHN75676.1| ribonuclease III [Streptomyces coelicoflavus ZG0656]
Length = 276
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 185 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 244
Query: 91 VAYMRLK 97
A+ ++
Sbjct: 245 SAWRSIR 251
>gi|21223928|ref|NP_629707.1| ribonuclease III [Streptomyces coelicolor A3(2)]
gi|4007731|emb|CAA22415.1| ribonuclease III [Streptomyces coelicolor A3(2)]
Length = 272
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 181 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 240
Query: 91 VAYMRLK 97
A+ ++
Sbjct: 241 SAWRSIR 247
>gi|383456226|ref|YP_005370215.1| ribonuclease III [Corallococcus coralloides DSM 2259]
gi|380734172|gb|AFE10174.1| ribonuclease III [Corallococcus coralloides DSM 2259]
Length = 260
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK +LQELA ++ P Y ++G HA F V +G V++ ++KK+AE +AA
Sbjct: 167 YKTLLQELAHEKLKLSPRYRVVAETGPEHAKVFEVEVCIGESVYARATGRNKKEAEQAAA 226
Query: 90 KVAYMRLKEPNPSQGPALVSPDIQA 114
+ RLK ++ + SPD+ A
Sbjct: 227 RTTLERLK----AEVAVVASPDVVA 247
>gi|88606764|ref|YP_505691.1| ribonuclease III [Anaplasma phagocytophilum HZ]
gi|123494405|sp|Q2GIW0.1|RNC_ANAPZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|88597827|gb|ABD43297.1| ribonuclease III [Anaplasma phagocytophilum HZ]
Length = 236
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 32 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
K LQE AQ +A+P Y +SG HAP F V V G+ G K KK AE++AAK
Sbjct: 166 KTALQEWAQGHNFAIPSYRLINKSGLEHAPVFTVEVTVNGQRVHATGCK-KKYAEIAAAK 224
Query: 91 VAYMRLKEPN 100
+ ++ + N
Sbjct: 225 LMLEKVTKQN 234
>gi|384915457|ref|ZP_10015677.1| Ribonuclease 3 [Methylacidiphilum fumariolicum SolV]
gi|384527143|emb|CCG91546.1| Ribonuclease 3 [Methylacidiphilum fumariolicum SolV]
Length = 242
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 32 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
K +LQE QK+ LPVY +SGE+H + V +V KSKK+AE+ AAK
Sbjct: 165 KGLLQEFLQKKGMELPVYRIVMESGEAHNKWYEVEVLWKNQVLGKGSGKSKKEAELRAAK 224
Query: 91 VAYMRLKEPNP 101
A+ +L P
Sbjct: 225 EAFEKLISQTP 235
>gi|408529026|emb|CCK27200.1| Ribonuclease 3 [Streptomyces davawensis JCM 4913]
Length = 263
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 174 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 91 VAYMRLK 97
A+ ++
Sbjct: 234 SAWRSIR 240
>gi|357410945|ref|YP_004922681.1| ribonuclease III [Streptomyces flavogriseus ATCC 33331]
gi|320008314|gb|ADW03164.1| ribonuclease III [Streptomyces flavogriseus ATCC 33331]
Length = 274
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E+ +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 174 WKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 91 VAY 93
A+
Sbjct: 234 SAW 236
>gi|301608714|ref|XP_002933926.1| PREDICTED: interferon-induced, double-stranded RNA-activated
protein kinase [Xenopus (Silurana) tropicalis]
Length = 534
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%)
Query: 23 NQEDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKK 82
N + S+ Y +L EL QK++++ + + G H P F EV + K+KK
Sbjct: 110 NHKMSSINYIGILNELCQKKSWSRNFRDVDRYGPDHEPKFYCVAEVNKREYPEGWGKNKK 169
Query: 83 QAEMSAAKVAYMRLKEPNP 101
QA AA +A LK NP
Sbjct: 170 QARKKAAFLALRLLKTENP 188
>gi|398782208|ref|ZP_10546026.1| ribonuclease III [Streptomyces auratus AGR0001]
gi|396996945|gb|EJJ07924.1| ribonuclease III [Streptomyces auratus AGR0001]
Length = 253
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 138 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 197
Query: 91 VAY 93
A+
Sbjct: 198 SAW 200
>gi|297202624|ref|ZP_06920021.1| ribonuclease III [Streptomyces sviceus ATCC 29083]
gi|197713199|gb|EDY57233.1| ribonuclease III [Streptomyces sviceus ATCC 29083]
Length = 272
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 170 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 229
Query: 91 VAYMRLK 97
A+ ++
Sbjct: 230 SAWRSIR 236
>gi|72009988|ref|XP_781832.1| PREDICTED: double-stranded RNA-specific editase 1-like
[Strongylocentrotus purpuratus]
Length = 696
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Query: 30 LYKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
L KN L +L E V+ T+ Q+G HAPTFV +VEV ++F G G +SKK A M A
Sbjct: 82 LPKNALMQL--NEIKPGLVFKTQSQTGPVHAPTFVVSVEVNDQLFEGTG-RSKKTARMHA 138
Query: 89 AKVAYMR-LKEPNPSQGPALVSPDIQAQADYSS 120
A++A ++ PN S + Q AD++S
Sbjct: 139 AELALKSFIQFPNASDAYQALG-RFQFNADFTS 170
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 34 VLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAY 93
+L EL + Y + ++SG+SH+ F ++ + G+ F G G ++KK A+ AA+ A
Sbjct: 238 ILNELKPGQKYEM----QEESGQSHSKNFTMSLTIDGKNFQGTG-RNKKLAKQRAAQAAL 292
Query: 94 MRLKEPNPSQGPALVSPDIQ 113
+ L + NP +++PD+Q
Sbjct: 293 IALFDMNP-----VLAPDLQ 307
>gi|329936742|ref|ZP_08286449.1| ribonuclease III [Streptomyces griseoaurantiacus M045]
gi|329303972|gb|EGG47855.1| ribonuclease III [Streptomyces griseoaurantiacus M045]
Length = 273
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 181 WKTSLQELTATEGLGVPEYLVSETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 240
Query: 91 VAYMRLK 97
A+ ++
Sbjct: 241 SAWRSIR 247
>gi|239991059|ref|ZP_04711723.1| ribonuclease III [Streptomyces roseosporus NRRL 11379]
gi|291448061|ref|ZP_06587451.1| ribonuclease III [Streptomyces roseosporus NRRL 15998]
gi|291351008|gb|EFE77912.1| ribonuclease III [Streptomyces roseosporus NRRL 15998]
Length = 274
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E+ +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 174 WKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 91 VAY 93
A+
Sbjct: 234 SAW 236
>gi|395771774|ref|ZP_10452289.1| ribonuclease III [Streptomyces acidiscabies 84-104]
Length = 263
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 170 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 229
Query: 91 VAYMRLK 97
A+ ++
Sbjct: 230 SAWRAIR 236
>gi|326776326|ref|ZP_08235591.1| ribonuclease III [Streptomyces griseus XylebKG-1]
gi|411004906|ref|ZP_11381235.1| ribonuclease III [Streptomyces globisporus C-1027]
gi|326656659|gb|EGE41505.1| ribonuclease III [Streptomyces griseus XylebKG-1]
Length = 274
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E+ +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 174 WKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 91 VAY 93
A+
Sbjct: 234 SAW 236
>gi|441178347|ref|ZP_20970023.1| ribonuclease III [Streptomyces rimosus subsp. rimosus ATCC 10970]
gi|440614520|gb|ELQ77785.1| ribonuclease III [Streptomyces rimosus subsp. rimosus ATCC 10970]
Length = 275
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 178 WKTSLQELTATEGLGVPEYMVSETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 237
Query: 91 VAY 93
A+
Sbjct: 238 SAW 240
>gi|224534577|ref|ZP_03675153.1| ribonuclease III [Borrelia spielmanii A14S]
gi|224514254|gb|EEF84572.1| ribonuclease III [Borrelia spielmanii A14S]
Length = 245
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK++LQE QK+ P Y K+ G H F + VG + S KSKK+AEM AA
Sbjct: 174 YKSLLQEYVQKKYKISPSYKLDKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAA 233
Query: 90 KVAYMRLKEPN 100
+VA +++ N
Sbjct: 234 EVALKAMEDIN 244
>gi|182435701|ref|YP_001823420.1| ribonuclease III [Streptomyces griseus subsp. griseus NBRC 13350]
gi|178464217|dbj|BAG18737.1| putative ribonuclease III [Streptomyces griseus subsp. griseus NBRC
13350]
Length = 274
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E+ +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 174 WKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 91 VAY 93
A+
Sbjct: 234 SAW 236
>gi|386854106|ref|YP_006203391.1| Ribonuclease III [Borrelia garinii BgVir]
gi|408671311|ref|YP_006871382.1| ribonuclease III [Borrelia garinii NMJW1]
gi|365194140|gb|AEW69038.1| Rnc [Borrelia garinii BgVir]
gi|407241133|gb|AFT84016.1| ribonuclease III [Borrelia garinii NMJW1]
Length = 245
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK++LQE QK+ P Y K+ G H F + VG + S KSKK+AEM AA
Sbjct: 174 YKSLLQEYVQKKYKISPSYKLDKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAA 233
Query: 90 KVAYMRLKEPN 100
+VA +++ N
Sbjct: 234 EVALKAMEDIN 244
>gi|456388603|gb|EMF54043.1| rnc protein [Streptomyces bottropensis ATCC 25435]
Length = 271
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 175 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 234
Query: 91 VAYMRLK 97
A+ ++
Sbjct: 235 SAWRAIR 241
>gi|345002305|ref|YP_004805159.1| ribonuclease III [Streptomyces sp. SirexAA-E]
gi|344317931|gb|AEN12619.1| ribonuclease III [Streptomyces sp. SirexAA-E]
Length = 274
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E+ +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 174 WKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 91 VAY 93
A+
Sbjct: 234 SAW 236
>gi|297191816|ref|ZP_06909214.1| ribonuclease III [Streptomyces pristinaespiralis ATCC 25486]
gi|197722006|gb|EDY65914.1| ribonuclease III [Streptomyces pristinaespiralis ATCC 25486]
Length = 296
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 167 WKTSLQELTAAEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 226
Query: 91 VAY 93
A+
Sbjct: 227 SAW 229
>gi|291454392|ref|ZP_06593782.1| ribonuclease III [Streptomyces albus J1074]
gi|291357341|gb|EFE84243.1| ribonuclease III [Streptomyces albus J1074]
Length = 265
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 176 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 235
Query: 91 VAYMRLK 97
A+ ++
Sbjct: 236 SAWRAIR 242
>gi|51598958|ref|YP_073146.1| ribonuclease III [Borrelia garinii PBi]
gi|219684131|ref|ZP_03539075.1| ribonuclease III [Borrelia garinii PBr]
gi|81609804|sp|Q660G7.1|RNC_BORGA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|51573529|gb|AAU07554.1| ribonuclease III [Borrelia garinii PBi]
gi|219672120|gb|EED29173.1| ribonuclease III [Borrelia garinii PBr]
Length = 245
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK++LQE QK+ P Y K+ G H F + VG + S KSKK+AEM AA
Sbjct: 174 YKSLLQEYVQKKYKISPSYKLDKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAA 233
Query: 90 KVAYMRLKEPN 100
+VA +++ N
Sbjct: 234 EVALKAMEDIN 244
>gi|365825121|ref|ZP_09367079.1| hypothetical protein HMPREF0045_00715 [Actinomyces graevenitzii
C83]
gi|365258496|gb|EHM88502.1| hypothetical protein HMPREF0045_00715 [Actinomyces graevenitzii
C83]
Length = 275
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGG-EVFSGQGAKSKKQAEMSAA 89
+K L EL P Y + G H+ F + VG E+ SG+G+ SKK AE+ AA
Sbjct: 172 WKTSLLELCNAHGLGAPNYEVEGFGPDHSRRFRACARVGDHELGSGEGS-SKKAAELVAA 230
Query: 90 KVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNVTAD 130
+ AY RL G AL + AD + SL V A+
Sbjct: 231 ESAYARLLAEKGDAGLALPGVNEALAADQAHGSLLGGVPAN 271
>gi|418693972|ref|ZP_13255019.1| ribonuclease III [Leptospira kirschneri str. H1]
gi|421108602|ref|ZP_15569138.1| ribonuclease III [Leptospira kirschneri str. H2]
gi|409958205|gb|EKO17099.1| ribonuclease III [Leptospira kirschneri str. H1]
gi|410006205|gb|EKO59965.1| ribonuclease III [Leptospira kirschneri str. H2]
Length = 249
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK LQE +QK LP+Y TK +SG HA TF V + + + SKK AE +AA
Sbjct: 177 YKTQLQEYSQKHFKILPLYRTKSESGPDHAKTFQVVVRIRDQWEATGSGVSKKSAEQNAA 236
Query: 90 KVAYMRLKE 98
K Y R+++
Sbjct: 237 KELYNRIRK 245
>gi|386382907|ref|ZP_10068467.1| ribonuclease III [Streptomyces tsukubaensis NRRL18488]
gi|385669633|gb|EIF92816.1| ribonuclease III [Streptomyces tsukubaensis NRRL18488]
Length = 285
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 179 WKTSLQELTAAEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 238
Query: 91 VAYMRL 96
A+ +
Sbjct: 239 SAWREI 244
>gi|330466266|ref|YP_004404009.1| ribonuclease iii [Verrucosispora maris AB-18-032]
gi|328809237|gb|AEB43409.1| ribonuclease iii [Verrucosispora maris AB-18-032]
Length = 287
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL +P Y + +G H TF + V V G + G +SKK+AE AA+
Sbjct: 168 WKTSLQELTAALGLGVPEYRIEGAGPDHLKTFTAWVVVAGNRYGGADGRSKKEAEQRAAE 227
Query: 91 VAYMRL 96
A+ L
Sbjct: 228 SAWRTL 233
>gi|345327639|ref|XP_001507858.2| PREDICTED: double-stranded RNA-specific editase 1-like
[Ornithorhynchus anatinus]
Length = 968
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV VEV G+ F G G KK +A
Sbjct: 76 VLPKNALMQLNEIKP-GLQYKLLSQTGPVHAPMFVMAVEVNGQAFEGTGPTKKKAKLHAA 134
Query: 89 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSS 120
K ++ PN S+ + + D++S
Sbjct: 135 EKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 166
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA FV V V G+ F G G ++KK A+ AA+ A L ++P PS
Sbjct: 253 ESGESHAKNFVMAVAVDGQNFEGSG-RNKKLAKARAAQSALASLFNMHLDQTPSRQPIPS 311
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 312 EGLQLHLPQVLADA 325
>gi|219685563|ref|ZP_03540380.1| ribonuclease III [Borrelia garinii Far04]
gi|219672962|gb|EED29984.1| ribonuclease III [Borrelia garinii Far04]
Length = 246
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK++LQE QK+ P Y K+ G H F + VG + S KSKK+AEM AA
Sbjct: 175 YKSLLQEYVQKKYKISPSYKLDKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAA 234
Query: 90 KVAYMRLKEPN 100
+VA +++ N
Sbjct: 235 EVALKAMEDIN 245
>gi|216263528|ref|ZP_03435523.1| ribonuclease III [Borrelia afzelii ACA-1]
gi|215980372|gb|EEC21193.1| ribonuclease III [Borrelia afzelii ACA-1]
Length = 245
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK++LQE QK+ P Y K+ G H F + VG + S KSKK+AEM AA
Sbjct: 174 YKSLLQEYVQKKYKISPNYKLDKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAA 233
Query: 90 KVAYMRLKEPN 100
+VA +++ N
Sbjct: 234 EVALKAMEDIN 244
>gi|408906224|emb|CCM11713.1| Ribonuclease III [Helicobacter heilmannii ASB1.4]
Length = 222
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
Query: 2 LEKQIELLRSMQRSQLSMMFTNQEDDSVL--YKNVLQELAQKEAYALPVYNTK-QSGESH 58
LE +E++R++ + L +++ + ++ YK+ LQEL Q+ +P Y K +SG H
Sbjct: 120 LESGLEVVRALMQDLLDLVYPDLSLQALFTDYKSALQELTQERFKTIPTYVLKSESGPDH 179
Query: 59 APTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
A F + + ++++ AKSKK+A+ AK A +L
Sbjct: 180 AKQFEMQIFILSKLYATCTAKSKKEAQQLCAKEALAQL 217
>gi|111115536|ref|YP_710154.1| ribonuclease III [Borrelia afzelii PKo]
gi|384207191|ref|YP_005592913.1| ribonuclease III [Borrelia afzelii PKo]
gi|123341290|sp|Q0SMF0.1|RNC_BORAP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|110890810|gb|ABH01978.1| ribonuclease III [Borrelia afzelii PKo]
gi|342857075|gb|AEL69923.1| ribonuclease III [Borrelia afzelii PKo]
Length = 245
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK++LQE QK+ P Y K+ G H F + VG + S KSKK+AEM AA
Sbjct: 174 YKSLLQEYVQKKYKISPNYKLDKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAA 233
Query: 90 KVAYMRLKEPN 100
+VA +++ N
Sbjct: 234 EVALKAMEDIN 244
>gi|359148735|ref|ZP_09181842.1| ribonuclease III [Streptomyces sp. S4]
Length = 260
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 171 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 230
Query: 91 VAYMRLK 97
A+ ++
Sbjct: 231 SAWRAIR 237
>gi|383649281|ref|ZP_09959687.1| ribonuclease III [Streptomyces chartreusis NRRL 12338]
Length = 269
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 168 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 227
Query: 91 VAY 93
A+
Sbjct: 228 SAW 230
>gi|302554407|ref|ZP_07306749.1| ribonuclease III [Streptomyces viridochromogenes DSM 40736]
gi|302472025|gb|EFL35118.1| ribonuclease III [Streptomyces viridochromogenes DSM 40736]
Length = 274
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 174 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 91 VAY 93
A+
Sbjct: 234 SAW 236
>gi|421739406|ref|ZP_16177716.1| ribonuclease III [Streptomyces sp. SM8]
gi|406692179|gb|EKC95890.1| ribonuclease III [Streptomyces sp. SM8]
Length = 260
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 171 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 230
Query: 91 VAYMRLK 97
A+ ++
Sbjct: 231 SAWRAIR 237
>gi|29829207|ref|NP_823841.1| ribonuclease III [Streptomyces avermitilis MA-4680]
gi|81719920|sp|Q82JT9.1|RNC_STRAW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|29606313|dbj|BAC70376.1| putative ribonuclease III [Streptomyces avermitilis MA-4680]
Length = 276
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 175 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 234
Query: 91 VAYMRLK 97
A+ ++
Sbjct: 235 SAWRAIR 241
>gi|294631623|ref|ZP_06710183.1| ribonuclease III [Streptomyces sp. e14]
gi|292834956|gb|EFF93305.1| ribonuclease III [Streptomyces sp. e14]
Length = 275
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 183 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 242
Query: 91 VAY 93
A+
Sbjct: 243 SAW 245
>gi|410679488|ref|YP_006931890.1| ribonuclease III [Borrelia afzelii HLJ01]
gi|408536876|gb|AFU75007.1| ribonuclease III [Borrelia afzelii HLJ01]
Length = 245
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK++LQE QK+ P Y K+ G H F + VG + S KSKK+AEM AA
Sbjct: 174 YKSLLQEYVQKKYKISPNYKLEKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAA 233
Query: 90 KVAYMRLKEPN 100
+VA +++ N
Sbjct: 234 EVALKAMEDIN 244
>gi|443623856|ref|ZP_21108344.1| putative Ribonuclease 3 [Streptomyces viridochromogenes Tue57]
gi|443342637|gb|ELS56791.1| putative Ribonuclease 3 [Streptomyces viridochromogenes Tue57]
Length = 273
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 181 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 240
Query: 91 VAY 93
A+
Sbjct: 241 SAW 243
>gi|348556433|ref|XP_003464026.1| PREDICTED: double-stranded RNA-specific editase 1, partial [Cavia
porcellus]
Length = 602
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP F+ +VEV G+VF G G KK +A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPRFLMSVEVNGQVFEGSGPTKKKAKLHAA 135
Query: 89 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSS 120
K ++ PN S+ + + D++S
Sbjct: 136 EKALRSFVQFPNASEAHLAMGRTLSMNTDFTS 167
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPVLS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|224532223|ref|ZP_03672855.1| ribonuclease III [Borrelia valaisiana VS116]
gi|224511688|gb|EEF82094.1| ribonuclease III [Borrelia valaisiana VS116]
Length = 245
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK++LQE QK+ P Y K+ G H F + VG + S KSKK+AEM AA
Sbjct: 174 YKSLLQEYIQKKYKISPSYKLDKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAA 233
Query: 90 KVAYMRLKEPN 100
+VA +++ N
Sbjct: 234 EVALKAMEDIN 244
>gi|429197323|ref|ZP_19189225.1| ribonuclease III [Streptomyces ipomoeae 91-03]
gi|428666991|gb|EKX66112.1| ribonuclease III [Streptomyces ipomoeae 91-03]
Length = 275
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 170 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 229
Query: 91 VAY 93
A+
Sbjct: 230 SAW 232
>gi|410584608|ref|ZP_11321710.1| ribonuclease III [Thermaerobacter subterraneus DSM 13965]
gi|410504194|gb|EKP93706.1| ribonuclease III [Thermaerobacter subterraneus DSM 13965]
Length = 284
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 32 KNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
K LQEL+++ P Y +G H P + V VGG + +SKK AE AA+
Sbjct: 202 KTALQELSRRLGLGEPTYRVVGAAGPEHDPRYTVEVRVGGRPLAQAVGRSKKVAEREAAR 261
Query: 91 VAYMRLKEPNPSQGPALVSPDIQAQA 116
+A L+EP GP +P+ + A
Sbjct: 262 MALAGLEEP---AGPGAAAPEREGTA 284
>gi|333997795|ref|YP_004530407.1| ribonuclease III [Treponema primitia ZAS-2]
gi|333741278|gb|AEF86768.1| ribonuclease III [Treponema primitia ZAS-2]
Length = 283
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK++LQEL Q PVY K+SG H F V V G+ F ++KK AE AA
Sbjct: 205 YKSLLQELTQGLYRNYPVYRVLKRSGPEHDRFFWIEVSVEGKTFGPGMGRNKKAAEQEAA 264
Query: 90 KVAYMRLKEPNPSQGPALVSPD 111
++AY +E ++ PA S D
Sbjct: 265 RIAY---EEIGDTKTPADSSKD 283
>gi|325000484|ref|ZP_08121596.1| RNAse III [Pseudonocardia sp. P1]
Length = 249
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL + +P Y + G H F +T VGG ++KK+AE AA+
Sbjct: 175 WKTSLQELTAAGGHGVPEYRIDEEGPDHLKVFTATAVVGGRDLGSGAGRTKKEAEQKAAE 234
Query: 91 VAYMRL 96
+A+ L
Sbjct: 235 LAWRTL 240
>gi|300797105|ref|NP_001179517.1| double-stranded RNA-specific editase B2 [Bos taurus]
Length = 734
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 87
SV KN L +L + L Q+G HAP F V+V G F G G +KK+A+M
Sbjct: 123 SVAPKNALVQLHELRP-GLQFRMVSQTGPVHAPIFAVAVDVNGLTFEGTG-PTKKKAKMR 180
Query: 88 AAKVAYMRLKE-PNPSQ---GPALVSPDIQA-QADYSSSSLQ 124
AA++A + PN Q P ++PD + QAD+ + Q
Sbjct: 181 AAELALRSFVQLPNAGQAPPAPGGMAPDFTSDQADFPDALFQ 222
>gi|453053100|gb|EMF00570.1| ribonuclease III [Streptomyces mobaraensis NBRC 13819 = DSM 40847]
Length = 275
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 138 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVEYGTGTGRSKKEAEQQAAE 197
Query: 91 VAY 93
A+
Sbjct: 198 SAW 200
>gi|405980874|ref|ZP_11039203.1| ribonuclease III [Actinomyces neuii BVS029A5]
gi|404392893|gb|EJZ87950.1| ribonuclease III [Actinomyces neuii BVS029A5]
Length = 257
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQELA + PVY + +G HA F + V G+V + A SKK A+ AA+
Sbjct: 162 WKTTLQELAAALELSSPVYESTSTGPDHARVFTAQALVDGQVVASGTASSKKLAQHEAAR 221
Query: 91 VAYMRLKEPNPSQGPALVSPDIQA 114
A L++ P D++A
Sbjct: 222 AAVEELQKRYDIHTPLGFDVDVEA 245
>gi|296481330|tpg|DAA23445.1| TPA: adenosine deaminase, RNA-specific, B2 [Bos taurus]
Length = 785
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 87
SV KN L +L + L Q+G HAP F V+V G F G G +KK+A+M
Sbjct: 123 SVAPKNALVQLHELRP-GLQFRMVSQTGPVHAPIFAVAVDVNGLTFEGTG-PTKKKAKMR 180
Query: 88 AAKVAYMRLKE-PNPSQ---GPALVSPDIQA-QADYSSSSLQ 124
AA++A + PN Q P ++PD + QAD+ + Q
Sbjct: 181 AAELALRSFVQLPNAGQAPPAPGGMAPDFTSDQADFPDALFQ 222
>gi|381397762|ref|ZP_09923171.1| Ribonuclease 3 [Microbacterium laevaniformans OR221]
gi|380774890|gb|EIC08185.1| Ribonuclease 3 [Microbacterium laevaniformans OR221]
Length = 230
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 32 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 91
K LQELA + A P Y G H F +TV VG +G G+ SKKQAEM+AA
Sbjct: 163 KTSLQELAARLTLAPPAYVISAEGPDHNRVFTATVSVGDATATGVGS-SKKQAEMAAALT 221
Query: 92 AYMRLKE 98
+ L +
Sbjct: 222 LWRTLSD 228
>gi|386842771|ref|YP_006247829.1| ribonuclease III [Streptomyces hygroscopicus subsp. jinggangensis
5008]
gi|374103072|gb|AEY91956.1| ribonuclease III [Streptomyces hygroscopicus subsp. jinggangensis
5008]
gi|451796063|gb|AGF66112.1| ribonuclease III [Streptomyces hygroscopicus subsp. jinggangensis
TL01]
Length = 274
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 170 WKTSLQELTAIEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 229
Query: 91 VAYMRLK 97
A+ ++
Sbjct: 230 SAWRAIR 236
>gi|350270970|ref|YP_004882278.1| ribonuclease III [Oscillibacter valericigenes Sjm18-20]
gi|348595812|dbj|BAK99772.1| ribonuclease III [Oscillibacter valericigenes Sjm18-20]
Length = 235
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 31 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
+K LQEL Q++A + +Y + G H TF++ V + G V G SKK+AE SAA
Sbjct: 166 FKTELQELVQRKANQVLLYRMAGEKGPDHDKTFLAEVLLNGMVIGAGGGHSKKEAEQSAA 225
Query: 90 KVAYMRLK 97
K A L+
Sbjct: 226 KAAMEELQ 233
>gi|315502406|ref|YP_004081293.1| ribonuclease III [Micromonospora sp. L5]
gi|315409025|gb|ADU07142.1| ribonuclease III [Micromonospora sp. L5]
Length = 267
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL +P Y + +G H TF + V V G + G +SKK+AE AA+
Sbjct: 168 WKTSLQELTAALGLGVPEYRIEGTGPDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAAE 227
Query: 91 VAYMRL 96
A+ L
Sbjct: 228 SAWRTL 233
>gi|302865861|ref|YP_003834498.1| ribonuclease III [Micromonospora aurantiaca ATCC 27029]
gi|302568720|gb|ADL44922.1| ribonuclease III [Micromonospora aurantiaca ATCC 27029]
Length = 267
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL +P Y + +G H TF + V V G + G +SKK+AE AA+
Sbjct: 168 WKTSLQELTAALGLGVPEYRIEGTGPDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAAE 227
Query: 91 VAYMRL 96
A+ L
Sbjct: 228 SAWRTL 233
>gi|303231076|ref|ZP_07317816.1| ribonuclease III [Veillonella atypica ACS-049-V-Sch6]
gi|401679475|ref|ZP_10811402.1| ribonuclease III [Veillonella sp. ACP1]
gi|302514207|gb|EFL56209.1| ribonuclease III [Veillonella atypica ACS-049-V-Sch6]
gi|400219409|gb|EJO50277.1| ribonuclease III [Veillonella sp. ACP1]
Length = 247
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 31 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK +LQE Q++ VY+ +SG HA TF+ V + G + KSKK AE AA
Sbjct: 177 YKTLLQEFVQRDGDKHIVYSLISESGPDHAKTFMMEVSIDGITYEAGTGKSKKIAEQHAA 236
Query: 90 KVAYMRL 96
++ RL
Sbjct: 237 QLTLERL 243
>gi|408680983|ref|YP_006880810.1| Ribonuclease III [Streptomyces venezuelae ATCC 10712]
gi|328885312|emb|CCA58551.1| Ribonuclease III [Streptomyces venezuelae ATCC 10712]
Length = 270
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E +P Y + G H TF + VGG + +SKK+AE AA+
Sbjct: 171 WKTSLQELTAAEGLGVPEYLVSEEGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 230
Query: 91 VAY 93
A+
Sbjct: 231 SAW 233
>gi|327270557|ref|XP_003220056.1| PREDICTED: double-stranded RNA-specific editase 1-like [Anolis
carolinensis]
Length = 698
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV VEV G+ F G G +KK+A++ A
Sbjct: 76 VLPKNALMQLNEIKP-GLQYKLISQTGPVHAPVFVMAVEVNGQAFEGSGP-TKKKAKLHA 133
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + D++S
Sbjct: 134 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 166
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 37/74 (50%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA FV V V G F G G ++KK A+ AA+ A L +P PS
Sbjct: 252 ESGESHAKNFVMAVSVDGHTFEGSG-RNKKLAKARAAQSALASLFNMQLDQTPSHQPIPS 310
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 311 EGLQLHLPQVLADA 324
>gi|303229664|ref|ZP_07316452.1| ribonuclease III [Veillonella atypica ACS-134-V-Col7a]
gi|302515789|gb|EFL57743.1| ribonuclease III [Veillonella atypica ACS-134-V-Col7a]
Length = 247
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 31 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK +LQE Q++ VY+ +SG HA TF+ V + G + KSKK AE AA
Sbjct: 177 YKTLLQEFVQRDGDKHIVYSLISESGPDHAKTFMMEVSIDGITYEAGTGKSKKIAEQHAA 236
Query: 90 KVAYMRL 96
++ RL
Sbjct: 237 QLTLERL 243
>gi|392374480|ref|YP_003206313.1| ribonuclease 3 [Candidatus Methylomirabilis oxyfera]
gi|258592173|emb|CBE68482.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [Candidatus
Methylomirabilis oxyfera]
Length = 246
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 32 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
K LQ LAQ +A P Y ++SG HAPTF V VG + +++++AE +AA+
Sbjct: 165 KTALQHLAQSLLHATPRYRLIRRSGAPHAPTFEVEVIVGQSPIAKGKGRNRQEAERAAAQ 224
Query: 91 VAYMRLKEPNPS 102
A L+EP+ +
Sbjct: 225 DALSSLREPSAT 236
>gi|149639721|ref|XP_001515387.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A-like [Ornithorhynchus
anatinus]
Length = 397
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 33 NVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 91
N LQELA + ++LP Y +K+SG +H F+ ++ V +G GA SKKQA+ SAA+
Sbjct: 213 NSLQELAMRCGWSLPEYTLSKESGPAHKKEFIMNCKLETYVETGTGA-SKKQAKESAAEK 271
Query: 92 AYMRLKEPNPSQGPALVSP 110
+L Q +LV P
Sbjct: 272 LLAKLHTVTAGQKKSLVKP 290
>gi|315453268|ref|YP_004073538.1| ribonuclease III [Helicobacter felis ATCC 49179]
gi|315132320|emb|CBY82948.1| ribonuclease III [Helicobacter felis ATCC 49179]
Length = 225
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK+ LQEL Q +P Y K +SG HA F + + +++ AKSKK+A+ A
Sbjct: 153 YKSALQELTQARFKVVPTYTLKSESGPDHAKQFEMQIFILDKLYGTCTAKSKKEAQQLCA 212
Query: 90 KVAYMRLK 97
++AY +L+
Sbjct: 213 QMAYQQLR 220
>gi|429759937|ref|ZP_19292431.1| ribonuclease III [Veillonella atypica KON]
gi|429178809|gb|EKY20075.1| ribonuclease III [Veillonella atypica KON]
Length = 247
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 31 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK +LQE Q++ VY+ +SG HA TF+ V + G + KSKK AE AA
Sbjct: 177 YKTLLQEFVQRDGDKHIVYSLISESGPDHAKTFMMEVSIDGITYEAGTGKSKKIAEQHAA 236
Query: 90 KVAYMRL 96
++ RL
Sbjct: 237 QLTLERL 243
>gi|225551799|ref|ZP_03772742.1| ribonuclease III [Borrelia sp. SV1]
gi|225371594|gb|EEH01021.1| ribonuclease III [Borrelia sp. SV1]
Length = 245
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK++LQE QK+ P Y K+ G H F + VG S KSKK+AEM AA
Sbjct: 174 YKSLLQEYVQKKYKISPSYKLDKEIGPDHDKVFCVELYVGENFISNGKGKSKKEAEMRAA 233
Query: 90 KVAYMRLKEPN 100
+VA ++ N
Sbjct: 234 EVALKAMENIN 244
>gi|406897689|gb|EKD41567.1| hypothetical protein ACD_73C00655G0003 [uncultured bacterium]
Length = 248
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 20 MFTNQEDDSVL--YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQ 76
+ T + +++L YK LQE++Q++ A+PVY + G H F + + ++F
Sbjct: 166 ILTQAQTENILKDYKTRLQEVSQEKFRAVPVYRLVDEKGPDHDKIFHVEIIIAQQLFGNG 225
Query: 77 GAKSKKQAEMSAAKVAYMRL 96
KSKKQAE +AA++A +L
Sbjct: 226 EGKSKKQAEQNAARMALAKL 245
>gi|153005020|ref|YP_001379345.1| ribonuclease III [Anaeromyxobacter sp. Fw109-5]
gi|152028593|gb|ABS26361.1| Ribonuclease III [Anaeromyxobacter sp. Fw109-5]
Length = 377
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
+K LQELAQ A P Y + G H+ TF E+ GEV +SKK AE +AA
Sbjct: 175 FKTQLQELAQSRVRATPRYRVVGEHGPDHSKTFEVETELRGEVVGRGTGRSKKDAEQAAA 234
Query: 90 KVAY 93
K+
Sbjct: 235 KIGL 238
>gi|332298046|ref|YP_004439968.1| ribonuclease 3 [Treponema brennaborense DSM 12168]
gi|332181149|gb|AEE16837.1| Ribonuclease 3 [Treponema brennaborense DSM 12168]
Length = 256
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 31 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK +LQE QK+ PVY K++G H TF +V + + K+KK+AE SAA
Sbjct: 185 YKTLLQEFYQKKYKECPVYELVKRTGPDHDRTFWVSVHLHSVTYGPASGKNKKEAEQSAA 244
Query: 90 KVAY 93
++A+
Sbjct: 245 RLAW 248
>gi|195941524|ref|ZP_03086906.1| ribonuclease III (rnc) [Borrelia burgdorferi 80a]
gi|216264636|ref|ZP_03436628.1| ribonuclease III [Borrelia burgdorferi 156a]
gi|218249229|ref|YP_002375205.1| ribonuclease III [Borrelia burgdorferi ZS7]
gi|221217995|ref|ZP_03589462.1| ribonuclease III [Borrelia burgdorferi 72a]
gi|223889463|ref|ZP_03624049.1| ribonuclease III [Borrelia burgdorferi 64b]
gi|224532354|ref|ZP_03672984.1| ribonuclease III [Borrelia burgdorferi WI91-23]
gi|224533390|ref|ZP_03673984.1| ribonuclease III [Borrelia burgdorferi CA-11.2a]
gi|225548949|ref|ZP_03769926.1| ribonuclease III [Borrelia burgdorferi 94a]
gi|225549922|ref|ZP_03770883.1| ribonuclease III [Borrelia burgdorferi 118a]
gi|226320458|ref|ZP_03796024.1| ribonuclease III [Borrelia burgdorferi 29805]
gi|226321403|ref|ZP_03796930.1| ribonuclease III [Borrelia burgdorferi Bol26]
gi|365992396|ref|NP_212839.2| ribonuclease III [Borrelia burgdorferi B31]
gi|387826338|ref|YP_005805791.1| ribonuclease III [Borrelia burgdorferi JD1]
gi|387827603|ref|YP_005806885.1| ribonuclease III [Borrelia burgdorferi N40]
gi|384872624|sp|O51648.2|RNC_BORBU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|215981109|gb|EEC21916.1| ribonuclease III [Borrelia burgdorferi 156a]
gi|218164417|gb|ACK74478.1| ribonuclease III [Borrelia burgdorferi ZS7]
gi|221192301|gb|EEE18521.1| ribonuclease III [Borrelia burgdorferi 72a]
gi|223885149|gb|EEF56253.1| ribonuclease III [Borrelia burgdorferi 64b]
gi|224512661|gb|EEF83032.1| ribonuclease III [Borrelia burgdorferi WI91-23]
gi|224513555|gb|EEF83912.1| ribonuclease III [Borrelia burgdorferi CA-11.2a]
gi|225369381|gb|EEG98833.1| ribonuclease III [Borrelia burgdorferi 118a]
gi|225370552|gb|EEG99988.1| ribonuclease III [Borrelia burgdorferi 94a]
gi|226233199|gb|EEH31951.1| ribonuclease III [Borrelia burgdorferi Bol26]
gi|226234100|gb|EEH32815.1| ribonuclease III [Borrelia burgdorferi 29805]
gi|312147960|gb|ADQ30619.1| ribonuclease III [Borrelia burgdorferi JD1]
gi|312148997|gb|ADQ29068.1| ribonuclease III [Borrelia burgdorferi N40]
gi|356609400|gb|AAC67040.2| ribonuclease III [Borrelia burgdorferi B31]
Length = 245
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK++LQE QK+ P Y K+ G H F + VG S KSKK+AEM AA
Sbjct: 174 YKSLLQEYVQKKYKISPSYKLDKEIGPDHDKVFCVELYVGENFISNGKGKSKKEAEMRAA 233
Query: 90 KVAYMRLKEPN 100
+VA ++ N
Sbjct: 234 EVALKAMENIN 244
>gi|449502333|ref|XP_004161611.1| PREDICTED: uncharacterized LOC101213863 [Cucumis sativus]
Length = 385
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 75/179 (41%), Gaps = 30/179 (16%)
Query: 21 FTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKS 80
F +D +L K++L E K P+Y TK + S A F ST+ G V++ ++
Sbjct: 153 FLLLREDLMLCKSILSEYTDKMGLERPIYTTKHNQGSVA-FFQSTLVFDGVVYTSDLGRT 211
Query: 81 KKQAEMSAAKVAYMRLKE--PNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTA 138
KK+AE AA+ A + L E NP AL DI A + LQ ++ +
Sbjct: 212 KKEAEQLAARAAILSLHEDATNPKSQKALG--DIIASKVRFHAMLQ---------KVKDS 260
Query: 139 GRLVFNPNSMPKVQAEEIRELTTVNTEVAGYDL---------------SQFPQPEFSSS 182
F P SMP+ E + E+ L SQF QPEFS++
Sbjct: 261 NFSQFQPKSMPENTVERVAMTVNEGKELKDAVLDGGVVCGAISEACPTSQF-QPEFSAT 318
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGG-EVFSGQGAKSKKQAEMSA 88
+YKN L E QK A+PVY T G P + STV V S ++++ AE A
Sbjct: 77 VYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDA 136
Query: 89 AKVAY 93
A+VA+
Sbjct: 137 ARVAF 141
>gi|449464150|ref|XP_004149792.1| PREDICTED: uncharacterized protein LOC101213863 [Cucumis sativus]
Length = 385
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 75/179 (41%), Gaps = 30/179 (16%)
Query: 21 FTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKS 80
F +D +L K++L E K P+Y TK + S A F ST+ G V++ ++
Sbjct: 153 FLLLREDLMLCKSILSEYTDKMGLERPIYTTKHNQGSVA-FFQSTLVFDGVVYTSDLGRT 211
Query: 81 KKQAEMSAAKVAYMRLKE--PNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTA 138
KK+AE AA+ A + L E NP AL DI A + LQ ++ +
Sbjct: 212 KKEAEQLAARAAILSLHEDATNPKSQKALG--DIIASKVRFHAMLQ---------KVKDS 260
Query: 139 GRLVFNPNSMPKVQAEEIRELTTVNTEVAGYDL---------------SQFPQPEFSSS 182
F P SMP+ E + E+ L SQF QPEFS++
Sbjct: 261 NFSQFQPKSMPENTVERVAMTVNEGKELKDAVLDGGMVCGAISEACPTSQF-QPEFSAT 318
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGG-EVFSGQGAKSKKQAEMSA 88
+YKN L E QK A+PVY T G P + STV V S ++++ AE A
Sbjct: 77 VYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDA 136
Query: 89 AKVAY 93
A+VA+
Sbjct: 137 ARVAF 141
>gi|327399771|ref|YP_004340640.1| ribonuclease 3 [Hippea maritima DSM 10411]
gi|327182400|gb|AEA34581.1| Ribonuclease 3 [Hippea maritima DSM 10411]
Length = 234
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 31 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK LQE+ QK+ LP Y K+ G+ H TF V + G + KSKK AE +AA
Sbjct: 163 YKTHLQEITQKQFGCLPEYVIVKEDGQEHNKTFYCDVMIKGVKYGFGIGKSKKDAEKNAA 222
Query: 90 KVAYMRLKEPN 100
K A +L++ +
Sbjct: 223 KEAVKKLEQND 233
>gi|359727275|ref|ZP_09265971.1| ribonuclease III [Leptospira weilii str. 2006001855]
Length = 266
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 31 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEV-FSGQGAKSKKQAEMSA 88
YK LQE +QK LPVY K +SG H+ TF +V + + SG GA SKK AE +A
Sbjct: 194 YKTQLQEYSQKHFKTLPVYRMKGESGPDHSKTFQVSVRIRDKWEASGYGA-SKKTAEQNA 252
Query: 89 AKVAYMRLK 97
AK Y++++
Sbjct: 253 AKELYIQIR 261
>gi|340624837|ref|YP_004743290.1| ribonuclease III [Methanococcus maripaludis X1]
gi|339905105|gb|AEK20547.1| ribonuclease III [Methanococcus maripaludis X1]
Length = 228
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
YK LQE + ++ N +++GE+H FV V+ G ++ KSKK+AEM AAK
Sbjct: 159 YKTKLQEFPELINKSINYVNLEETGEAHDKKFVIAVKSGRKILGKGIGKSKKEAEMKAAK 218
Query: 91 VAYMRL 96
A ++L
Sbjct: 219 NALLKL 224
>gi|417782087|ref|ZP_12429820.1| ribonuclease III [Leptospira weilii str. 2006001853]
gi|410777680|gb|EKR62325.1| ribonuclease III [Leptospira weilii str. 2006001853]
Length = 266
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 31 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEV-FSGQGAKSKKQAEMSA 88
YK LQE +QK LPVY K +SG H+ TF +V + + SG GA SKK AE +A
Sbjct: 194 YKTQLQEYSQKHFKTLPVYRMKGESGPDHSKTFQVSVRIRDKWEASGYGA-SKKTAEQNA 252
Query: 89 AKVAYMRLK 97
AK Y++++
Sbjct: 253 AKELYIQIR 261
>gi|343128004|ref|YP_004777935.1| ribonuclease III [Borrelia bissettii DN127]
gi|342222692|gb|AEL18870.1| ribonuclease III [Borrelia bissettii DN127]
Length = 245
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK++LQE QK+ P Y K+ G H F + VG S KSKK+AEM AA
Sbjct: 174 YKSLLQEYVQKKYKISPSYKLDKEIGPDHDKVFCVELYVGENFISNGKGKSKKEAEMRAA 233
Query: 90 KVAYMRLKEPN 100
+VA ++ N
Sbjct: 234 EVALKAMENIN 244
>gi|45359089|ref|NP_988646.1| ribonuclease III family protein [Methanococcus maripaludis S2]
gi|45047964|emb|CAF31082.1| Ribonuclease III family:Double-stranded RNA binding (DsRBD) domain
[Methanococcus maripaludis S2]
Length = 230
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
YK LQE + ++ N +++GE+H FV V+ G ++ KSKK+AEM AAK
Sbjct: 160 YKTKLQEFPELINKSINYVNLEETGEAHDKKFVIAVKSGRKILGKGIGKSKKEAEMKAAK 219
Query: 91 VAYMRL 96
A ++L
Sbjct: 220 NALLKL 225
>gi|386746174|ref|YP_006219391.1| ribonuclease III [Helicobacter pylori HUP-B14]
gi|384552423|gb|AFI07371.1| ribonuclease III [Helicobacter pylori HUP-B14]
Length = 239
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P+Y K+ G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPIYQLLKEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYYALQKLKE 237
>gi|456862113|gb|EMF80691.1| ribonuclease III [Leptospira weilii serovar Topaz str. LT2116]
Length = 181
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 31 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEV-FSGQGAKSKKQAEMSA 88
YK LQE +QK LPVY K +SG H+ TF +V + + SG GA SKK AE +A
Sbjct: 109 YKTQLQEYSQKHFKTLPVYRMKGESGPDHSKTFQVSVRIRDKWEASGYGA-SKKTAEQNA 167
Query: 89 AKVAYMRLK 97
AK Y++++
Sbjct: 168 AKELYIQIR 176
>gi|452205270|ref|YP_007485399.1| ribonuclease III [Dehalococcoides mccartyi BTF08]
gi|452112326|gb|AGG08057.1| ribonuclease III [Dehalococcoides mccartyi BTF08]
Length = 248
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 31 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK+ LQEL Q + P Y T SG H F++ V VF+ +SKK+AE SAA
Sbjct: 172 YKSRLQELIQAQLQLTPRYRITNFSGPEHNRLFIAEVYAEDRVFAEGSGRSKKEAEASAA 231
Query: 90 KVA 92
KVA
Sbjct: 232 KVA 234
>gi|91201952|emb|CAJ75012.1| similar to ribonuclease III [Candidatus Kuenenia stuttgartiensis]
Length = 236
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 9 LRSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVE 67
LR +++ ++ ++ NQ + YK++LQ+ +QKE P Y +Q G H +F V
Sbjct: 146 LRYLKK-EIDLVCKNQHKKN--YKSILQQYSQKEYGITPTYRLLQQIGPDHGKSFEIVVS 202
Query: 68 VGGEVFSGQGAKSKKQAEMSAAKVA 92
+ G + KSKK+AE SAAK A
Sbjct: 203 IKGSEYGRGWGKSKKEAEQSAAKEA 227
>gi|377564338|ref|ZP_09793660.1| ribonuclease III [Gordonia sputi NBRC 100414]
gi|377528520|dbj|GAB38825.1| ribonuclease III [Gordonia sputi NBRC 100414]
Length = 261
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQELA + Y P Y +G H+ F + + GE ++KK+AE AA
Sbjct: 187 WKTSLQELAAERGYGPPQYQISSTGPDHSKEFTARAVIAGEELGEGVGRTKKEAEQKAAS 246
Query: 91 VAYMRLKE 98
+A+ L E
Sbjct: 247 LAWQALTE 254
>gi|383753564|ref|YP_005432467.1| putative ribonuclease 3 [Selenomonas ruminantium subsp. lactilytica
TAM6421]
gi|381365616|dbj|BAL82444.1| putative ribonuclease 3 [Selenomonas ruminantium subsp. lactilytica
TAM6421]
Length = 240
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 16 QLSMMFTNQEDDSVL--YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEV 72
QL +F E ++L YK +LQE+ +EA Y SG H TF V + G+V
Sbjct: 153 QLMPLFRQAEQGAILKDYKTILQEVVYQEAQQTVSYELVSTSGPDHDKTFTFNVCITGKV 212
Query: 73 FSGQGAKSKKQAEMSAAKVAYMRLK 97
+SKK+AE AAK A ++L+
Sbjct: 213 MGTGTGRSKKEAEQRAAKEALVKLQ 237
>gi|195395490|ref|XP_002056369.1| GJ10909 [Drosophila virilis]
gi|194143078|gb|EDW59481.1| GJ10909 [Drosophila virilis]
Length = 851
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 34 VLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFS-GQGAKSKKQAEMSAAKV 91
VL EL K + P Y + SG SH+ F +VE+ G+ ++ QG SKK+A+++AAK+
Sbjct: 781 VLNELTSKNKWTPPQYTLRDDSGPSHSRMFRFSVEINGQTYTPAQGCNSKKEAKLNAAKL 840
Query: 92 AYMRL 96
L
Sbjct: 841 CLRAL 845
>gi|410942221|ref|ZP_11374008.1| ribonuclease III [Leptospira noguchii str. 2006001870]
gi|410782476|gb|EKR71480.1| ribonuclease III [Leptospira noguchii str. 2006001870]
Length = 247
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK LQE +QK LP+Y K +SG HA TF V++ + + SKK AE +AA
Sbjct: 177 YKTQLQEYSQKHFKILPIYRIKSESGPDHAKTFQVVVKIRDQWEAIGSGVSKKSAEQNAA 236
Query: 90 KVAYMRLKE 98
K Y R+++
Sbjct: 237 KELYNRIRK 245
>gi|359408393|ref|ZP_09200863.1| ribonuclease III [SAR116 cluster alpha proteobacterium HIMB100]
gi|356676587|gb|EHI48938.1| ribonuclease III [SAR116 cluster alpha proteobacterium HIMB100]
Length = 239
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 32 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
K+ LQE A Y P+Y+ Q+G +H P F +VEV G S +++KQAE AA+
Sbjct: 164 KSELQEWAASAKYDRPLYHLVSQTGSAHEPMFTMSVEVSGLGVSAGEGRTRKQAEREAAR 223
Query: 91 VAYMRLKEPNPSQ 103
+ N Q
Sbjct: 224 QFLLHYVHKNKGQ 236
>gi|333995527|ref|YP_004528140.1| ribonuclease III [Treponema azotonutricium ZAS-9]
gi|333737229|gb|AEF83178.1| ribonuclease III [Treponema azotonutricium ZAS-9]
Length = 228
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK++LQEL Q+ + PVY K+SG HA F V V + ++KK AE AA
Sbjct: 156 YKSLLQELCQRLYHNYPVYRLLKRSGPDHARLFWMEVIVSDIAYGPGTGRNKKTAEQEAA 215
Query: 90 KVAY 93
K+AY
Sbjct: 216 KMAY 219
>gi|238019508|ref|ZP_04599934.1| hypothetical protein VEIDISOL_01377 [Veillonella dispar ATCC 17748]
gi|237864207|gb|EEP65497.1| hypothetical protein VEIDISOL_01377 [Veillonella dispar ATCC 17748]
Length = 245
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK +LQE Q++ VY +SG HA TF VE+ G + KSKK AE AA
Sbjct: 176 YKTLLQEYVQRDGDKHTVYRLLSESGPDHAKTFHMVVEINGVTYEAGSGKSKKIAEQHAA 235
Query: 90 KVAYMRL 96
++ +L
Sbjct: 236 QLTLEKL 242
>gi|395539825|ref|XP_003771866.1| PREDICTED: double-stranded RNA-specific editase B2, partial
[Sarcophilus harrisii]
Length = 718
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 87
SV KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 97 SVTPKNALVQLHELKP-GLQYKMVSQTGPVHAPVFAVAVEVNGFTFEGTGP-TKKKAKMR 154
Query: 88 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
AA++A + PN Q + I D++S
Sbjct: 155 AAELALKSFVQFPNACQAHFAMGNGISPSTDFTS 188
>gi|334348787|ref|XP_001373773.2| PREDICTED: double-stranded RNA-specific editase B2-like
[Monodelphis domestica]
Length = 715
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 87
SV KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 93 SVTPKNALVQLHELKP-GLQYKMVSQTGPVHAPVFAVAVEVNGFTFEGTGP-TKKKAKMR 150
Query: 88 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
AA++A + PN Q + I D++S
Sbjct: 151 AAELALKSFVQFPNACQAHFAMGNGISPSTDFTS 184
>gi|269797766|ref|YP_003311666.1| ribonuclease III [Veillonella parvula DSM 2008]
gi|282849040|ref|ZP_06258429.1| ribonuclease III [Veillonella parvula ATCC 17745]
gi|294791672|ref|ZP_06756820.1| ribonuclease III [Veillonella sp. 6_1_27]
gi|294793530|ref|ZP_06758667.1| ribonuclease III [Veillonella sp. 3_1_44]
gi|269094395|gb|ACZ24386.1| ribonuclease III [Veillonella parvula DSM 2008]
gi|282581315|gb|EFB86709.1| ribonuclease III [Veillonella parvula ATCC 17745]
gi|294455100|gb|EFG23472.1| ribonuclease III [Veillonella sp. 3_1_44]
gi|294456902|gb|EFG25264.1| ribonuclease III [Veillonella sp. 6_1_27]
Length = 246
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK +LQE Q++ VY+ +SG HA TF VE+ G + KSKK AE AA
Sbjct: 176 YKTLLQEYVQRDGDKHIVYHLLSESGPDHAKTFHMEVEINGVTYEAGSGKSKKIAEQHAA 235
Query: 90 KVAYMRL 96
++ +L
Sbjct: 236 QLTLEKL 242
>gi|116327694|ref|YP_797414.1| ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
str. L550]
gi|122284510|sp|Q053L4.1|RNC_LEPBL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|116120438|gb|ABJ78481.1| Ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
str. L550]
Length = 247
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 31 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEV-FSGQGAKSKKQAEMSA 88
YK LQE +QK LPVY K +SG H+ F +V + + SG GA SKK AE +A
Sbjct: 177 YKTQLQEYSQKHFKTLPVYRMKGESGPDHSKMFQVSVRIRDQWEASGYGA-SKKIAEQNA 235
Query: 89 AKVAYMRLK 97
AK Y+R++
Sbjct: 236 AKELYIRIR 244
>gi|385678566|ref|ZP_10052494.1| ribonuclease III [Amycolatopsis sp. ATCC 39116]
Length = 230
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL +P Y + +G H F +TV V G F +KK+AE AA+
Sbjct: 155 WKTSLQELTASAGLGVPEYKVEDTGPDHRKEFSATVLVAGRDFGNGNGTTKKEAEQKAAE 214
Query: 91 VAYMRLKEPNPSQG 104
A+ L E +G
Sbjct: 215 TAWRALSEELKPEG 228
>gi|78183763|ref|YP_376197.1| ribonuclease III [Synechococcus sp. CC9902]
gi|78168057|gb|ABB25154.1| RNAse III [Synechococcus sp. CC9902]
Length = 249
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 32 KNVLQELAQKEAYALPVYNTKQSGESHA--PTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
K +LQE +Q E LP Y T + H F S VEVG + + +S+K+AE +AA
Sbjct: 166 KTMLQEWSQAEGLGLPNYTTTEQSSRHGDPERFKSRVEVGSRLSANGFGRSRKEAEQNAA 225
Query: 90 KVAYMRLKE 98
A RL++
Sbjct: 226 TEAVQRLQD 234
>gi|453078061|ref|ZP_21980795.1| ribonuclease III [Rhodococcus triatomae BKS 15-14]
gi|452757696|gb|EME16098.1| ribonuclease III [Rhodococcus triatomae BKS 15-14]
Length = 231
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL + +PVY +G H F +TV V G F ++KK+AE AA
Sbjct: 138 WKTSLQELTAERGAGVPVYEITSTGPDHDKEFTATVLVAGAPFGVGVGRTKKEAEQKAAS 197
Query: 91 VAYMRLKE 98
A+ L +
Sbjct: 198 SAWQTLTD 205
>gi|354615572|ref|ZP_09033327.1| Ribonuclease 3 [Saccharomonospora paurometabolica YIM 90007]
gi|353220077|gb|EHB84560.1| Ribonuclease 3 [Saccharomonospora paurometabolica YIM 90007]
Length = 265
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 37/87 (42%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL +P Y +G H F + V VGG +KK+AE AA+
Sbjct: 170 WKTSLQELTASAGLGVPEYKVVDTGPDHRKEFNAVVLVGGRSLGEGDGTTKKEAEQKAAE 229
Query: 91 VAYMRLKEPNPSQGPALVSPDIQAQAD 117
A+ L E S PA A AD
Sbjct: 230 SAWRALNEELRSHPPATAGDGADAPAD 256
>gi|431893769|gb|ELK03587.1| Double-stranded RNA-specific editase 1 [Pteropus alecto]
Length = 531
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 6/106 (5%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYM 94
L E+ YAL Q+G HAP FV VEV G+ F G G KK +A K
Sbjct: 3 LNEIRPGLQYAL----LSQTGPVHAPLFVVAVEVNGQAFEGAGPTKKKAKLHAAEKALRS 58
Query: 95 RLKEPNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGR 140
++ PN ++ + + A D++S Q+ L + +T R
Sbjct: 59 FVQFPNAAEAHLALGRGLPANTDFTSD--QAGFPDALFNGFETPDR 102
>gi|444731290|gb|ELW71648.1| Double-stranded RNA-specific editase B2 [Tupaia chinensis]
Length = 847
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 87
SV KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 112 SVTPKNALVQLHELKP-GLQYRMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMR 169
Query: 88 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
AA++A + PN Q + + D++S
Sbjct: 170 AAELALKSFVQFPNACQAHLAMGSGVSPCTDFTS 203
>gi|237752001|ref|ZP_04582481.1| ribonuclease III [Helicobacter winghamensis ATCC BAA-430]
gi|229376568|gb|EEO26659.1| ribonuclease III [Helicobacter winghamensis ATCC BAA-430]
Length = 223
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 2 LEKQIELLRSMQRSQLSMMFTNQEDDSVLY--KNVLQELAQKEAYALPVYNT-KQSGESH 58
LE +++ R++ + LS ++ + + +S+ Y K LQEL Q + P Y SG H
Sbjct: 124 LESGLDIARNLMHNLLSAVYPSIDLNSLFYDHKTALQELTQAKFGETPEYVLLDSSGPDH 183
Query: 59 APTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 97
F+ V++ G+ F+ KSKK+A+ AK+A LK
Sbjct: 184 NKNFLIGVKIQGKEFAKASGKSKKEAQQICAKIAIEALK 222
>gi|363420255|ref|ZP_09308349.1| ribonuclease III [Rhodococcus pyridinivorans AK37]
gi|359736051|gb|EHK85002.1| ribonuclease III [Rhodococcus pyridinivorans AK37]
Length = 267
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL + +P Y +G H F +T +GG + ++KK+AE AA
Sbjct: 174 WKTSLQELTAERGLGVPAYEITATGPDHDKEFTATALIGGNPYGTGVGRTKKEAEQKAAS 233
Query: 91 VAYMRLKEPNPSQ 103
A+ L E ++
Sbjct: 234 AAWNALTEGTAAE 246
>gi|357501283|ref|XP_003620930.1| DsRNA-binding protein [Medicago truncatula]
gi|355495945|gb|AES77148.1| DsRNA-binding protein [Medicago truncatula]
Length = 105
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 28 SVLY--KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSG-QGAKSKKQA 84
SV Y K LQEL QK +Y LP Y T G H P F STV V F+ + A + K +
Sbjct: 27 SVAYERKQKLQELCQKNSYPLPKYQTTHEGPLHNPLFSSTVTVKSISFTSPKPASTLKAS 86
Query: 85 EMSAAKVAYMRL 96
+ AA VA+
Sbjct: 87 QEFAAMVAFHHF 98
>gi|385228416|ref|YP_005788349.1| ribonuclease III [Helicobacter pylori Puno120]
gi|344334854|gb|AEN15298.1| ribonuclease III [Helicobacter pylori Puno120]
Length = 238
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 154 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 206
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 207 QDKIYATAKGKSKKEAEQQCAYYALQKLKE 236
>gi|440684120|ref|YP_007158915.1| RNAse III [Anabaena cylindrica PCC 7122]
gi|428681239|gb|AFZ60005.1| RNAse III [Anabaena cylindrica PCC 7122]
Length = 228
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 32 KNVLQELAQKEAYALP-VYNTKQ-SGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
KN QE Q+E A P Y T+Q G SHAP FV+ V V G+ + ++KK+AE AA
Sbjct: 155 KNRFQEWVQREIGANPPKYMTEQIGGPSHAPEFVAKVLVDGKEYGIGKGRNKKEAEKDAA 214
Query: 90 KVAYMRLKE 98
+ A +LK+
Sbjct: 215 EDALAKLKK 223
>gi|420460167|ref|ZP_14958966.1| ribonuclease III [Helicobacter pylori Hp A-27]
gi|393077269|gb|EJB78018.1| ribonuclease III [Helicobacter pylori Hp A-27]
Length = 239
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKIYATAKGKSKKEAEQQCAYYALQKLKE 237
>gi|193627224|ref|XP_001952647.1| PREDICTED: hypothetical protein LOC100161769 [Acyrthosiphon pisum]
Length = 732
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 34 VLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+L E K + +P +NT +SG SH TF+ TV V G + ++KK A+M AAK
Sbjct: 661 LLNEFCAKRKWDIPKFNTLDESGPSHRKTFIMTVVVNGVQYCSSRCQTKKLAKMEAAK 718
>gi|373252029|ref|ZP_09540147.1| ribonuclease III [Nesterenkonia sp. F]
Length = 227
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K +QE+A Y + SG H TF +T+ VGG +S KSKK+AE AA+
Sbjct: 146 WKTTIQEVAADRDLGDIRYVMEDSGPDHDKTFTATLTVGGVAYSSGTGKSKKEAEREAAR 205
Query: 91 VAYMRLKEPNPSQG 104
+ L +G
Sbjct: 206 LTAATLTAGEADRG 219
>gi|326382852|ref|ZP_08204542.1| ribonuclease III [Gordonia neofelifaecis NRRL B-59395]
gi|326198442|gb|EGD55626.1| ribonuclease III [Gordonia neofelifaecis NRRL B-59395]
Length = 234
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL+ + + P Y +G H F + VGG+ K+KK+AE AA+
Sbjct: 164 WKTSLQELSAERSLGQPQYQISSTGPDHNKEFTAVAVVGGDELGAGTGKTKKEAEQRAAE 223
Query: 91 VAYMRLKE 98
+A+ L+E
Sbjct: 224 LAWKALEE 231
>gi|313892793|ref|ZP_07826374.1| ribonuclease III [Veillonella sp. oral taxon 158 str. F0412]
gi|313442724|gb|EFR61135.1| ribonuclease III [Veillonella sp. oral taxon 158 str. F0412]
Length = 246
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK +LQE Q++ VY +SG HA TF VE+ G + KSKK AE AA
Sbjct: 176 YKTLLQEYVQRDGDKHIVYRLLSESGPDHAKTFHIVVEINGVTYEAGSGKSKKIAEQHAA 235
Query: 90 KVAYMRL 96
++ +L
Sbjct: 236 QLTLEKL 242
>gi|449276158|gb|EMC84820.1| Double-stranded RNA-specific editase B2, partial [Columba livia]
Length = 682
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 87
SV KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 60 SVTPKNALVQLHELKP-GLQYKMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMR 117
Query: 88 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
AA++A + PN Q + I D++S
Sbjct: 118 AAELALKSFVQFPNACQAHFAMGNCINPSTDFTS 151
>gi|326921558|ref|XP_003207024.1| PREDICTED: double-stranded RNA-specific editase B2-like [Meleagris
gallopavo]
Length = 720
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 87
SV KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 98 SVTPKNALVQLHELKP-GLQYKMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMR 155
Query: 88 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
AA++A + PN Q + I D++S
Sbjct: 156 AAELALKSFVQFPNACQAHFAMGNCINPSTDFTS 189
>gi|260881779|ref|ZP_05893556.1| ribonuclease III [Mitsuokella multacida DSM 20544]
gi|260847870|gb|EEX67877.1| ribonuclease III [Mitsuokella multacida DSM 20544]
Length = 247
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 16 QLSMMFTNQEDDSVL--YKNVLQELA-QKEAYALPVYNTKQSGESHAPTFVSTVEVGGEV 72
QL F N E ++L YK +LQE+ +KE ++ +SG HA F V V G+V
Sbjct: 156 QLRGEFENAEHGAILKDYKTILQEIVFRKEGQSIAYELVSESGPDHAKEFTFRVRVTGKV 215
Query: 73 FSGQGAKSKKQAEMSAAKVA 92
SKK+AE AA+ A
Sbjct: 216 MGEGTGHSKKEAEQHAARRA 235
>gi|333920821|ref|YP_004494402.1| ribonuclease III [Amycolicicoccus subflavus DQS3-9A1]
gi|333483042|gb|AEF41602.1| Ribonuclease III [Amycolicicoccus subflavus DQS3-9A1]
Length = 283
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL + +P Y G H F +TV V GE ++KK+AE AA
Sbjct: 214 WKTSLQELTAERGLGVPAYEVAAKGPDHDKEFTATVIVAGEDLGSGTGRTKKEAEQKAAG 273
Query: 91 VAYMRL 96
A+ L
Sbjct: 274 AAWRHL 279
>gi|302525051|ref|ZP_07277393.1| ribonuclease III [Streptomyces sp. AA4]
gi|302433946|gb|EFL05762.1| ribonuclease III [Streptomyces sp. AA4]
Length = 246
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL +P Y + SG H F +TV V G +KK+AE AA+
Sbjct: 170 WKTSLQELTASGGLGVPEYRVEDSGPDHRKEFTATVLVAGRALGEGNGTTKKEAEQKAAE 229
Query: 91 VAYMRLKE 98
A+ L E
Sbjct: 230 TAWRALSE 237
>gi|160892686|ref|ZP_02073476.1| hypothetical protein CLOL250_00216 [Clostridium sp. L2-50]
gi|156865727|gb|EDO59158.1| ribonuclease III [Clostridium sp. L2-50]
Length = 230
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 19 MMFTNQEDDSVLY--KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGE-VFSG 75
+ + E S+ Y K+ LQELAQKE L ++ G H ++VS V + GE V +G
Sbjct: 146 FLLDDVETHSLFYDAKSTLQELAQKEEKTLTYALLEEKGPDHNKSYVSEVCINGEHVATG 205
Query: 76 QGAKSKKQAEMSAAKVAYMRLKEP 99
+GA S+K +E +AA A +++K+
Sbjct: 206 EGA-SRKASEQTAAYNALLQIKKK 228
>gi|328951087|ref|YP_004368422.1| double-stranded RNA binding domain-containing protein
[Marinithermus hydrothermalis DSM 14884]
gi|328451411|gb|AEB12312.1| double-stranded RNA binding domain protein [Marinithermus
hydrothermalis DSM 14884]
Length = 158
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 32 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSAAK 90
K+ L + + A P ++T+ +G H P F+S V V G V +GQG ++K++AE AA+
Sbjct: 5 KSALIAYCRTKGLAGPEFDTRGTGPEHDPLFISDVMVNGTVVATGQG-RTKREAERIAAE 63
Query: 91 VAYMRLK 97
+AY LK
Sbjct: 64 LAYEALK 70
>gi|363729628|ref|XP_418563.3| PREDICTED: double-stranded RNA-specific editase B2 [Gallus gallus]
Length = 792
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 87
SV KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 123 SVTPKNALVQLHELKP-GLQYKMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMR 180
Query: 88 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
AA++A + PN Q + I D++S
Sbjct: 181 AAELALKSFVQFPNACQAHFAMGNCINPSTDFTS 214
>gi|421100758|ref|ZP_15561379.1| ribonuclease III [Leptospira borgpetersenii str. 200901122]
gi|410796156|gb|EKR98294.1| ribonuclease III [Leptospira borgpetersenii str. 200901122]
Length = 247
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 31 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEV-FSGQGAKSKKQAEMSA 88
YK LQE +QK LPVY K +SG H+ TF +V + + SG GA SKK AE +A
Sbjct: 177 YKTQLQEYSQKHFKTLPVYYMKGESGPDHSKTFQVSVRIRDKWEASGYGA-SKKTAEQNA 235
Query: 89 AKVAYMRLK 97
AK Y++++
Sbjct: 236 AKELYVQIR 244
>gi|308182848|ref|YP_003926975.1| ribonuclease III [Helicobacter pylori PeCan4]
gi|308065033|gb|ADO06925.1| ribonuclease III [Helicobacter pylori PeCan4]
Length = 239
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P+Y K+ G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPIYQLLKEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYQALQKLKE 237
>gi|441509918|ref|ZP_20991830.1| ribonuclease III [Gordonia aichiensis NBRC 108223]
gi|441445933|dbj|GAC49791.1| ribonuclease III [Gordonia aichiensis NBRC 108223]
Length = 261
Score = 43.9 bits (102), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQELA + Y P Y +G H+ F + + GE ++KK+AE AA
Sbjct: 187 WKTSLQELAAERGYGPPQYQISSTGPDHSKEFTARAVIAGEELGEGIGRTKKEAEQKAAS 246
Query: 91 VAYMRLKE 98
+A+ L E
Sbjct: 247 LAWQALTE 254
>gi|374314927|ref|YP_005061355.1| ribonuclease III [Sphaerochaeta pleomorpha str. Grapes]
gi|359350571|gb|AEV28345.1| ribonuclease III [Sphaerochaeta pleomorpha str. Grapes]
Length = 248
Score = 43.9 bits (102), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 31 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK LQE QK P Y K++G H TF V+V F ++KK+AE +AA
Sbjct: 176 YKTSLQEYMQKRWRKCPTYTLVKKTGPEHDFTFFVEVKVNDLSFGPAKGRNKKEAEQNAA 235
Query: 90 KVAY 93
K+AY
Sbjct: 236 KLAY 239
>gi|339320327|ref|YP_004680022.1| ribonuclease III [Candidatus Midichloria mitochondrii IricVA]
gi|338226452|gb|AEI89336.1| ribonuclease III [Candidatus Midichloria mitochondrii IricVA]
Length = 222
Score = 43.9 bits (102), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 32 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
K++LQE AQ++ ALP+Y K+ G +H+PTF +V G G KSKK+AE +AA
Sbjct: 151 KSLLQEWAQRDNGALPIYKIVKREGVAHSPTFTISVTAHDMQAIGIG-KSKKEAEQNAA 208
>gi|315924201|ref|ZP_07920427.1| ribonuclease III [Pseudoramibacter alactolyticus ATCC 23263]
gi|315622603|gb|EFV02558.1| ribonuclease III [Pseudoramibacter alactolyticus ATCC 23263]
Length = 229
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
Query: 3 EKQIELLRSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEA-YALPVYNTKQSGESHAPT 61
+K IELL ++ TN YK LQEL QK++ + + K G H T
Sbjct: 132 KKAIELLSDNIEMAIAGRLTND------YKTALQELIQKQSDHVIEYVLDKADGPEHDKT 185
Query: 62 FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA-YMRLK-EPNPSQ 103
F T+ + G++ S K+KK+AE AAK + + RL+ E +PS+
Sbjct: 186 FFVTLMINGQMSSNGRGKTKKEAEQQAAKKSLHARLRHEKSPSE 229
>gi|310689632|pdb|2L3C|A Chain A, Solution Structure Of Adar2 Dsrbm1 Bound To Lsl Rna
Length = 74
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 4 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 61
Query: 89 AKVA 92
A+ A
Sbjct: 62 AEKA 65
>gi|268318202|ref|YP_003291921.1| ribonuclease III [Rhodothermus marinus DSM 4252]
gi|262335736|gb|ACY49533.1| ribonuclease III [Rhodothermus marinus DSM 4252]
Length = 260
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK++L E AQ + P Y + G SHA TF +G A SKKQAE AA
Sbjct: 183 YKSLLLEFAQARGWPQPRYRVVAEEGPSHARTFTVEAWIGNRRLGRGTAGSKKQAEQQAA 242
Query: 90 KVAYMRLK 97
+ A RL+
Sbjct: 243 REALARLQ 250
>gi|224044691|ref|XP_002193461.1| PREDICTED: double-stranded RNA-specific editase B2 [Taeniopygia
guttata]
Length = 744
Score = 43.9 bits (102), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 87
SV KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 123 SVTPKNALVQLHELKP-GLQYKMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMR 180
Query: 88 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
AA++A + PN Q + I D++S
Sbjct: 181 AAELALKSFVQFPNACQAHFAMGNCISPSTDFTS 214
>gi|345304499|ref|YP_004826401.1| ribonuclease 3 [Rhodothermus marinus SG0.5JP17-172]
gi|345113732|gb|AEN74564.1| Ribonuclease 3 [Rhodothermus marinus SG0.5JP17-172]
Length = 260
Score = 43.9 bits (102), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK++L E AQ + P Y + G SHA TF +G A SKKQAE AA
Sbjct: 183 YKSLLLEFAQARGWPQPRYRVVAEEGPSHARTFTVEAWIGNRRLGRGTAGSKKQAEQQAA 242
Query: 90 KVAYMRLK 97
+ A RL+
Sbjct: 243 REALARLQ 250
>gi|432958614|ref|XP_004086071.1| PREDICTED: double-stranded RNA-specific editase 1-like [Oryzias
latipes]
Length = 645
Score = 43.9 bits (102), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
L KN L++L + L +QSG HAP FV VEV G F G G +KK+A++SAA
Sbjct: 55 LPKNALEQLNELRP-GLQYTLLRQSGPVHAPLFVMQVEVDGRFFQGAGL-TKKKAKLSAA 112
Query: 90 KVAYMRL 96
+ A L
Sbjct: 113 EQALQSL 119
>gi|73748788|ref|YP_308027.1| ribonuclease III [Dehalococcoides sp. CBDB1]
gi|90101624|sp|Q3ZXY9.1|RNC_DEHSC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|73660504|emb|CAI83111.1| ribonuclease III [Dehalococcoides sp. CBDB1]
Length = 237
Score = 43.9 bits (102), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 31 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK+ LQEL Q + P Y T SG H F++ V VF+ +SKK+AE +AA
Sbjct: 161 YKSRLQELIQAQLQLTPRYRITNFSGPEHNRLFIAEVYAEDRVFAEGSGRSKKEAETNAA 220
Query: 90 KVA 92
KVA
Sbjct: 221 KVA 223
>gi|93278801|pdb|2B7T|A Chain A, Structure Of Adar2 Dsrbm1
Length = 73
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 4 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 61
Query: 89 AKVA 92
A+ A
Sbjct: 62 AEKA 65
>gi|428180344|gb|EKX49212.1| hypothetical protein GUITHDRAFT_105286 [Guillardia theta CCMP2712]
Length = 336
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%)
Query: 32 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 91
K L L + + +PV+ T ++G H P F TV +G + F G +KK AE A+K
Sbjct: 83 KGNLINLCTRNSLEMPVFKTTRAGPDHEPQFSCTVTIGQQTFYGSQQPTKKLAEKEASKQ 142
Query: 92 AYMRLKE 98
A L E
Sbjct: 143 AVEGLFE 149
>gi|147669550|ref|YP_001214368.1| ribonuclease III [Dehalococcoides sp. BAV1]
gi|289432809|ref|YP_003462682.1| ribonuclease III [Dehalococcoides sp. GT]
gi|452203773|ref|YP_007483906.1| ribonuclease III [Dehalococcoides mccartyi DCMB5]
gi|146270498|gb|ABQ17490.1| RNAse III [Dehalococcoides sp. BAV1]
gi|288946529|gb|ADC74226.1| ribonuclease III [Dehalococcoides sp. GT]
gi|452110832|gb|AGG06564.1| ribonuclease III [Dehalococcoides mccartyi DCMB5]
Length = 248
Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 31 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK+ LQEL Q + P Y T SG H F++ V VF+ +SKK+AE +AA
Sbjct: 172 YKSRLQELIQAQLQLTPRYRITNFSGPEHNRLFIAEVYAEDRVFAEGSGRSKKEAETNAA 231
Query: 90 KVA 92
KVA
Sbjct: 232 KVA 234
>gi|428211293|ref|YP_007084437.1| ribonuclease III [Oscillatoria acuminata PCC 6304]
gi|427999674|gb|AFY80517.1| ribonuclease III [Oscillatoria acuminata PCC 6304]
Length = 386
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 32 KNVLQELAQKE-AYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
KN QE QK P Y T QSG H+P F V+VG EV+ +SKK+AE AA
Sbjct: 317 KNRFQEWVQKNLGPTQPKYETIAQSGPDHSPDFTVEVKVGNEVYGVGKGRSKKEAEKRAA 376
Query: 90 KVA 92
++A
Sbjct: 377 ELA 379
>gi|194744759|ref|XP_001954860.1| GF18480 [Drosophila ananassae]
gi|190627897|gb|EDV43421.1| GF18480 [Drosophila ananassae]
Length = 871
Score = 43.5 bits (101), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 34 VLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFS-GQGAKSKKQAEMSAAKV 91
VL EL K + P Y ++ +G H+ TF+ +VE+ G+ ++ +G +KK+A+++AAK+
Sbjct: 801 VLNELTSKNKWTPPHYTLRENTGPPHSRTFLFSVEINGQTYTPDRGCNNKKEAKLNAAKL 860
Query: 92 AYMRL 96
L
Sbjct: 861 CLCAL 865
>gi|224159933|ref|XP_002338148.1| predicted protein [Populus trichocarpa]
gi|222871054|gb|EEF08185.1| predicted protein [Populus trichocarpa]
Length = 83
Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQ-GAKSKKQAEMSA 88
+YK+ LQ+L+Q+ + +P + G+ H+P F +TV V +FS + S K+A+ +A
Sbjct: 1 MYKSKLQQLSQQRGWEIPTSEVTKEGQEHSPLFYATVTVDATLFSTPLPSSSSKEAQNAA 60
Query: 89 AKVAY 93
AK A+
Sbjct: 61 AKQAH 65
>gi|373857288|ref|ZP_09600030.1| ribonuclease III [Bacillus sp. 1NLA3E]
gi|372452938|gb|EHP26407.1| ribonuclease III [Bacillus sp. 1NLA3E]
Length = 260
Score = 43.5 bits (101), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK+ LQEL Q++ + Y + G +H FVS V + G+ +SKK+AE AA
Sbjct: 176 YKSQLQELVQRDGTGMIEYKVLHEKGPAHNREFVSRVSLSGDELGTGTGRSKKEAEQHAA 235
Query: 90 KVAYMRLK------EPNPSQ 103
++A +LK E NP Q
Sbjct: 236 QMALEKLKKSFIQNENNPEQ 255
>gi|303233301|ref|ZP_07319972.1| ribonuclease III [Atopobium vaginae PB189-T1-4]
gi|302480601|gb|EFL43690.1| ribonuclease III [Atopobium vaginae PB189-T1-4]
Length = 229
Score = 43.5 bits (101), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 32 KNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
K+ LQE +Q+ + +PVY ++ SG +H P F + V V GE+ SKK+++ AA+
Sbjct: 162 KSELQEFSQRIYHEMPVYELEEESGPAHLPHFTTAVYVNGELVGRGSGTSKKESQTQAAQ 221
Query: 91 VAYMRLKE 98
A +L++
Sbjct: 222 AALDKLEK 229
>gi|373498045|ref|ZP_09588560.1| ribonuclease III [Fusobacterium sp. 12_1B]
gi|404367694|ref|ZP_10973056.1| ribonuclease III [Fusobacterium ulcerans ATCC 49185]
gi|313688785|gb|EFS25620.1| ribonuclease III [Fusobacterium ulcerans ATCC 49185]
gi|371962085|gb|EHO79694.1| ribonuclease III [Fusobacterium sp. 12_1B]
Length = 235
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 11 SMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVG 69
++ Q S+ ++ +D + +K +LQE +Q+E +P Y +++G H F V++G
Sbjct: 142 ALSHIQDSIDHVDKNEDILDFKTILQEYSQREYKIIPSYEVIRETGPDHQKIFEIEVKIG 201
Query: 70 GEVFSGQGAKSKKQAEMSAAK 90
G G K+KK AE SAAK
Sbjct: 202 DRTGRGTG-KNKKSAEQSAAK 221
>gi|444374116|ref|ZP_21173423.1| ribonuclease III [Helicobacter pylori A45]
gi|443621340|gb|ELT81779.1| ribonuclease III [Helicobacter pylori A45]
Length = 239
Score = 43.5 bits (101), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 155 RTYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKIYATAKGKSKKEAEQQCAYQALQKLKE 237
>gi|224161117|ref|XP_002338294.1| predicted protein [Populus trichocarpa]
gi|222871751|gb|EEF08882.1| predicted protein [Populus trichocarpa]
Length = 196
Score = 43.5 bits (101), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGG-EVFSGQGAKSKKQAEMSA 88
+YK+ LQ + Q+ + LP Y + G+ H+P F +TV V S + S K+A+ A
Sbjct: 1 MYKSNLQAVCQQRGWELPTYQVTKQGQDHSPLFSATVTVNATSFSSPSPSSSSKKAQSEA 60
Query: 89 AKVAY 93
AK+AY
Sbjct: 61 AKLAY 65
>gi|452953036|gb|EME58459.1| ribonuclease III [Amycolatopsis decaplanina DSM 44594]
Length = 248
Score = 43.5 bits (101), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL +P Y + +G H F +TV VGG +KK+AE AA+
Sbjct: 170 WKTSLQELTASAGLGVPEYKVEDTGPDHRKEFSATVLVGGRELGYGSGTTKKEAEQKAAE 229
Query: 91 VAYMRL 96
A+ +L
Sbjct: 230 TAWRQL 235
>gi|398337618|ref|ZP_10522323.1| ribonuclease III [Leptospira kmetyi serovar Malaysia str.
Bejo-Iso9]
Length = 247
Score = 43.5 bits (101), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK LQE +QK LPVY K +SG HA F +V + + + SKK AE +AA
Sbjct: 177 YKTQLQEYSQKHFKVLPVYRMKGESGPDHAKVFQVSVRIRDKWEASGSGVSKKAAEQNAA 236
Query: 90 KVAYMRLK 97
K Y R++
Sbjct: 237 KELYNRIQ 244
>gi|386751066|ref|YP_006224286.1| ribonuclease III [Helicobacter pylori Shi417]
gi|384557324|gb|AFH97792.1| ribonuclease III [Helicobacter pylori Shi417]
Length = 239
Score = 43.5 bits (101), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKIYATAKGKSKKEAEQQCAYQALQKLKE 237
>gi|386754216|ref|YP_006227434.1| ribonuclease III [Helicobacter pylori Shi112]
gi|384560474|gb|AFI00941.1| ribonuclease III [Helicobacter pylori Shi112]
Length = 239
Score = 43.5 bits (101), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKIYATAKGKSKKEAEQQCAYQALQKLKE 237
>gi|344277900|ref|XP_003410735.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific
editase B2-like [Loxodonta africana]
Length = 757
Score = 43.5 bits (101), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 87
SV KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 135 SVTPKNALVQLHELKP-GLQYKMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMR 192
Query: 88 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
AA++A + PN Q + + D++S
Sbjct: 193 AAELALKSFVQFPNACQAHFAMGNSVSPATDFTS 226
>gi|195108151|ref|XP_001998656.1| GI24090 [Drosophila mojavensis]
gi|193915250|gb|EDW14117.1| GI24090 [Drosophila mojavensis]
Length = 873
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 34 VLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFS-GQGAKSKKQAEMSAAKV 91
VL EL K + P Y K SG SH+ F+ +VE+ G+ ++ Q +KK+A+++AAK+
Sbjct: 803 VLNELTSKNKWTPPQYTLKDDSGPSHSRMFLFSVEINGQTYTPAQACNNKKEAKLNAAKL 862
Query: 92 AYMRL 96
L
Sbjct: 863 CLRAL 867
>gi|359424778|ref|ZP_09215889.1| ribonuclease III [Gordonia amarae NBRC 15530]
gi|358239922|dbj|GAB05471.1| ribonuclease III [Gordonia amarae NBRC 15530]
Length = 274
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL+ + P Y +G H F +T VGGE +SKK+AE AA
Sbjct: 170 WKTSLQELSSERELGPPQYQITSTGPDHDKEFTATAIVGGEEMGTGVGRSKKEAEQKAAA 229
Query: 91 VAYMRLKEPNPSQGPALVSPD 111
+A+ L N + G +P+
Sbjct: 230 LAWEELN--NRATGAGDTAPE 248
>gi|384892695|ref|YP_005766788.1| ribonuclease III [Helicobacter pylori Cuz20]
gi|308061992|gb|ADO03880.1| ribonuclease III [Helicobacter pylori Cuz20]
Length = 239
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKIYATAKGKSKKEAEQQCAYQALQKLKE 237
>gi|308184450|ref|YP_003928583.1| ribonuclease III [Helicobacter pylori SJM180]
gi|308060370|gb|ADO02266.1| ribonuclease III [Helicobacter pylori SJM180]
Length = 239
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKIYATAKGKSKKEAEQQCAYQALQKLKE 237
>gi|290968970|ref|ZP_06560505.1| ribonuclease III [Megasphaera genomosp. type_1 str. 28L]
gi|335049107|ref|ZP_08542118.1| ribonuclease III [Megasphaera sp. UPII 199-6]
gi|290780926|gb|EFD93519.1| ribonuclease III [Megasphaera genomosp. type_1 str. 28L]
gi|333764552|gb|EGL41946.1| ribonuclease III [Megasphaera sp. UPII 199-6]
Length = 236
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 8 LLRSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTV 66
+LR + R L+++ D YK + QE Q++ Y+ K+SG H TF V
Sbjct: 147 ILRHL-RDYLALVENGHYDQD--YKTLFQEYIQRDGEHHITYSLCKESGPDHDKTFTMQV 203
Query: 67 EVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
G+V KSKK AE AA+ A +RL
Sbjct: 204 AADGKVLGEGCGKSKKMAEQHAARQALLRL 233
>gi|188527489|ref|YP_001910176.1| ribonuclease III [Helicobacter pylori Shi470]
gi|238691923|sp|B2UTG4.1|RNC_HELPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|188143729|gb|ACD48146.1| ribonuclease III [Helicobacter pylori Shi470]
Length = 238
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 154 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 206
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 207 QDKIYATAKGKSKKEAEQQCAYQALQKLKE 236
>gi|420501452|ref|ZP_14999996.1| ribonuclease III [Helicobacter pylori Hp P-30]
gi|393150258|gb|EJC50566.1| ribonuclease III [Helicobacter pylori Hp P-30]
Length = 239
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKIYATAKGKSKKEAEQQCAYQALQKLKE 237
>gi|425791004|ref|YP_007018921.1| ribonuclease III [Helicobacter pylori Aklavik86]
gi|425629319|gb|AFX89859.1| ribonuclease III [Helicobacter pylori Aklavik86]
Length = 238
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 154 RAYKRLDLEHLFID-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 206
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 100
++++ KSKK+AE A A +LKE
Sbjct: 207 QDKIYATAKGKSKKEAEQQCAYQALQKLKEAK 238
>gi|443673520|ref|ZP_21138582.1| Ribonuclease III [Rhodococcus sp. AW25M09]
gi|443413903|emb|CCQ16920.1| Ribonuclease III [Rhodococcus sp. AW25M09]
Length = 260
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL + A +P Y + +G H F +TV VG +SKK+AE AA
Sbjct: 179 WKTSLQELTAERALGVPAYAIESTGPDHDKEFTATVLVGESPLGVGVGRSKKEAEQKAAS 238
Query: 91 VAYMRL 96
+A+ L
Sbjct: 239 LAWNAL 244
>gi|410460645|ref|ZP_11314319.1| ribonuclease III [Bacillus azotoformans LMG 9581]
gi|409926699|gb|EKN63853.1| ribonuclease III [Bacillus azotoformans LMG 9581]
Length = 247
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 6/99 (6%)
Query: 2 LEKQIELLRSMQRSQLSM-MFTNQEDDSVLYKNVLQELAQKEAYA-LPVYNTKQSGESHA 59
L+K IE L+ + ++S +F++ D YK+ LQE+ Q+ L ++ G +H
Sbjct: 150 LDKVIEFLQKVIYPKISEGVFSHVMD----YKSQLQEIVQRNGQGSLEYLIIQEKGPAHN 205
Query: 60 PTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
FVS V + GE+ KSKK+AE AAK A LK+
Sbjct: 206 REFVSRVALNGEILGTGVGKSKKEAEQKAAKEALDELKK 244
>gi|377573013|ref|ZP_09802089.1| ribonuclease III [Mobilicoccus pelagius NBRC 104925]
gi|377538287|dbj|GAB47254.1| ribonuclease III [Mobilicoccus pelagius NBRC 104925]
Length = 295
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQELA + +P Y + G H F + VG E +SKK+AE AA
Sbjct: 175 WKTSLQELAASGGHGMPEYRVTEEGPDHEKVFTAHAVVGDEDLGTGVGRSKKEAEQQAAH 234
Query: 91 VAYMRL 96
A+ L
Sbjct: 235 TAWTEL 240
>gi|297685923|ref|XP_002820521.1| PREDICTED: double-stranded RNA-specific editase B2-like, partial
[Pongo abelii]
Length = 345
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 87
SV KN L +L + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 60 SVAPKNALVQLHELRP-GLQYRTVSQTGPVHAPVFAVAVEVNGLTFEGTG-PTKKKAKMR 117
Query: 88 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
AA++A + PN Q + D D++S
Sbjct: 118 AAELALRSFVQFPNACQAHLAMGGDPGPGTDFTS 151
>gi|229491421|ref|ZP_04385245.1| ribonuclease III [Rhodococcus erythropolis SK121]
gi|453068807|ref|ZP_21972078.1| ribonuclease III [Rhodococcus qingshengii BKS 20-40]
gi|229321706|gb|EEN87503.1| ribonuclease III [Rhodococcus erythropolis SK121]
gi|452764990|gb|EME23255.1| ribonuclease III [Rhodococcus qingshengii BKS 20-40]
Length = 257
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL + +PVY +G H F +TV + G+ +SKK+AE AA
Sbjct: 173 WKTSLQELTAEHGAGVPVYEITATGPDHDKEFTATVLISGKPLGVGVGRSKKEAEQKAAS 232
Query: 91 VAYMRLKE 98
A+ + E
Sbjct: 233 SAWKTMSE 240
>gi|397515135|ref|XP_003827815.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific
editase B2 [Pan paniscus]
Length = 739
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 87
SV KN L +L + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 123 SVAPKNALVQLHELRP-GLQYRTVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMR 180
Query: 88 AAKVAYMRLKE-PNPSQ-------GPALVSPDIQAQADYSSSSLQ 124
AA++A + PN Q GP + QAD+ + Q
Sbjct: 181 AAELALRSFVQFPNACQAHLAMGGGPGPGTDFTSDQADFPDTLFQ 225
>gi|385217430|ref|YP_005778906.1| ribonuclease III [Helicobacter pylori F16]
gi|317177479|dbj|BAJ55268.1| ribonuclease III [Helicobacter pylori F16]
Length = 239
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 100
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKIYATAKGKSKKEAEQQCAYQALQKLKEAK 239
>gi|420404699|ref|ZP_14903879.1| ribonuclease III [Helicobacter pylori CPY6271]
gi|393024569|gb|EJB25679.1| ribonuclease III [Helicobacter pylori CPY6271]
Length = 239
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 100
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKIYATAKGKSKKEAEQQCAYQALQKLKEAK 239
>gi|385225363|ref|YP_005785288.1| ribonuclease III [Helicobacter pylori 83]
gi|332673509|gb|AEE70326.1| ribonuclease III [Helicobacter pylori 83]
Length = 239
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 100
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKIYATAKGKSKKEAEQQCAYQALQKLKEAK 239
>gi|384894291|ref|YP_005768340.1| ribonuclease III [Helicobacter pylori Sat464]
gi|308063545|gb|ADO05432.1| ribonuclease III [Helicobacter pylori Sat464]
Length = 238
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 154 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 206
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 207 QDKIYATAKGKSKKEAEQQCAYQALQKLKE 236
>gi|384887681|ref|YP_005762192.1| ribonuclease III [Helicobacter pylori 52]
gi|261839511|gb|ACX99276.1| ribonuclease III [Helicobacter pylori 52]
Length = 239
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 100
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKIYATAKGKSKKEAEQQCAYQALQKLKEAK 239
>gi|426363823|ref|XP_004049032.1| PREDICTED: double-stranded RNA-specific editase B2 [Gorilla gorilla
gorilla]
Length = 739
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 87
SV KN L +L + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 123 SVAPKNALVQLHELRP-GLQYRTVSQTGPVHAPVFAVAVEVNGLTFEGTG-PTKKKAKMR 180
Query: 88 AAKVAYMRLKE-PNPSQ-------GPALVSPDIQAQADYSSSSLQ 124
AA++A + PN Q GP + QAD+ + Q
Sbjct: 181 AAELALRSFVQFPNACQAHLAMGGGPGPGTDFTSDQADFPDTLFQ 225
>gi|393909181|gb|EJD75350.1| hypothetical protein LOAG_17493 [Loa loa]
Length = 911
Score = 43.1 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 13/109 (11%)
Query: 104 GPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGRLVFNPNSMPKVQAEEIRELTTVN 163
GP +S D Q + +SSS++Q +T N++ L + N +R+ TT N
Sbjct: 749 GPTHISID-QTVSPFSSSTIQRIITTSSLPNLEATDNLSSSNN---------LRKGTTSN 798
Query: 164 TEVAGYDLSQFPQPEFSSSSDLSASSGVEKGMPSSSLPLECTVDPRVDP 212
+ +LS PQPE + SSD +S K M S+++P+ +P +P
Sbjct: 799 IVLPELELSTIPQPELTLSSDTELASHWMKDMSSTNIPVP---EPNPEP 844
>gi|384899032|ref|YP_005774411.1| ribonuclease III [Helicobacter pylori F30]
gi|317178975|dbj|BAJ56763.1| ribonuclease III [Helicobacter pylori F30]
Length = 232
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 148 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 200
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 100
++++ KSKK+AE A A +LKE
Sbjct: 201 QDKIYATAKGKSKKEAEQQCAYQALQKLKEAK 232
>gi|384896042|ref|YP_005770031.1| ribonuclease III [Helicobacter pylori 35A]
gi|315586658|gb|ADU41039.1| ribonuclease III [Helicobacter pylori 35A]
Length = 238
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 154 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 206
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 100
++++ KSKK+AE A A +LKE
Sbjct: 207 QDKIYATAKGKSKKEAEQQCAYQALQKLKEAK 238
>gi|283781424|ref|YP_003372179.1| ribonuclease III [Pirellula staleyi DSM 6068]
gi|283439877|gb|ADB18319.1| ribonuclease III [Pirellula staleyi DSM 6068]
Length = 273
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK++LQ+ AQ+E P Y+ + G H+ F + VGG+ + ++KK+AE AA
Sbjct: 197 YKSLLQQFAQRECGNTPTYHLLDEKGPDHSKCFKISASVGGKKYQAAWGRNKKEAEQRAA 256
Query: 90 KVAYMRLK 97
A +K
Sbjct: 257 NNALAEIK 264
>gi|328948083|ref|YP_004365420.1| ribonuclease 3 [Treponema succinifaciens DSM 2489]
gi|328448407|gb|AEB14123.1| Ribonuclease 3 [Treponema succinifaciens DSM 2489]
Length = 248
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 31 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK +LQE QK+ A P Y+ + +G H F +V++G V+ K+KK AE +AA
Sbjct: 179 YKTLLQEFYQKKTNACPSYSLVRTTGPDHDRIFYVSVKLGDVVYGPASGKNKKSAEQAAA 238
Query: 90 KVA 92
VA
Sbjct: 239 GVA 241
>gi|385249180|ref|YP_005777399.1| ribonuclease III [Helicobacter pylori F57]
gi|317181975|dbj|BAJ59759.1| ribonuclease III [Helicobacter pylori F57]
Length = 238
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 154 RTYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 206
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 100
++++ KSKK+AE A A +LKE
Sbjct: 207 QDKIYATAKGKSKKEAEQQCAYQALQKLKEAK 238
>gi|387782339|ref|YP_005793052.1| ribonuclease III [Helicobacter pylori 51]
gi|261838098|gb|ACX97864.1| ribonuclease III [Helicobacter pylori 51]
Length = 239
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 100
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKIYATAKGKSKKEAEQQCAYQALQKLKEAK 239
>gi|291240590|ref|XP_002740205.1| PREDICTED: RIKEN cDNA 1810030O07-like [Saccoglossus kowalevskii]
Length = 838
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 24 QEDDSVLYKNVLQELAQKEAYALPVYNTK--QSGESHAPTFVSTVEVGGEV-FSGQGA-- 78
Q DD + YKN+LQE QK + P Y + Q + T ++ +G V +S +G
Sbjct: 529 QHDDFINYKNILQEHCQKNRFDTPKYESTKIQDNPAQFTTVLTYKTLGNTVKYSSEGLTH 588
Query: 79 KSKKQAEMSAAKVAYMRL 96
+KK++E SAAKVA + L
Sbjct: 589 SNKKESEQSAAKVACLGL 606
>gi|225180933|ref|ZP_03734381.1| Ribonuclease III [Dethiobacter alkaliphilus AHT 1]
gi|225168414|gb|EEG77217.1| Ribonuclease III [Dethiobacter alkaliphilus AHT 1]
Length = 233
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 31 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK ++QE Q P Y + G H+ FV+ + + EV+ +SKK+AE AA
Sbjct: 163 YKTLMQEYTQASLATTPEYRIVAEQGPDHSKVFVAQLLLNREVYGEGSGRSKKEAEQEAA 222
Query: 90 KVAYMRLK 97
+VAY +L+
Sbjct: 223 RVAYQQLR 230
>gi|420412236|ref|ZP_14911365.1| ribonuclease III [Helicobacter pylori NQ4228]
gi|393027894|gb|EJB28982.1| ribonuclease III [Helicobacter pylori NQ4228]
Length = 239
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYYALQKLKE 237
>gi|420395321|ref|ZP_14894548.1| ribonuclease III [Helicobacter pylori CPY1124]
gi|393013757|gb|EJB14931.1| ribonuclease III [Helicobacter pylori CPY1124]
Length = 238
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 154 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 206
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 100
++++ KSKK+AE A A +LKE
Sbjct: 207 QDKIYATAKGKSKKEAEQQCAYQALQKLKEAK 238
>gi|420406849|ref|ZP_14906019.1| ribonuclease III [Helicobacter pylori CPY6311]
gi|393023686|gb|EJB24800.1| ribonuclease III [Helicobacter pylori CPY6311]
Length = 238
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 154 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 206
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 100
++++ KSKK+AE A A +LKE
Sbjct: 207 QDKIYATAKGKSKKEAEQQCAYQALQKLKEAK 238
>gi|384889296|ref|YP_005763598.1| ribonuclease III [Helicobacter pylori v225d]
gi|297379862|gb|ADI34749.1| ribonuclease III [Helicobacter pylori v225d]
Length = 238
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 154 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 206
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 100
++++ KSKK+AE A A +LKE
Sbjct: 207 QDKIYATAKGKSKKEAEQQCAYQALQKLKEAK 238
>gi|402879494|ref|XP_003903372.1| PREDICTED: double-stranded RNA-specific editase B2 [Papio anubis]
Length = 724
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 87
SV KN L +L + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 108 SVAPKNALVQLHELRP-GLQYRTVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMR 165
Query: 88 AAKVAYMRLKE-PNPSQ-------GPALVSPDIQAQADYSSSSLQ 124
AA++A + PN Q GP + QAD+ + Q
Sbjct: 166 AAELALRSFVQFPNACQAHLAMGGGPGPGTDFTSDQADFPDTLFQ 210
>gi|420401804|ref|ZP_14900995.1| ribonuclease III [Helicobacter pylori CPY6081]
gi|393017623|gb|EJB18775.1| ribonuclease III [Helicobacter pylori CPY6081]
Length = 239
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 100
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKIYATAKGKSKKEAEQQCAYQALQKLKEAK 239
>gi|425789256|ref|YP_007017176.1| ribonuclease III [Helicobacter pylori Aklavik117]
gi|425627571|gb|AFX91039.1| ribonuclease III [Helicobacter pylori Aklavik117]
Length = 238
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 154 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 206
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 100
++++ KSKK+AE A A +LKE
Sbjct: 207 QDKIYATAKGKSKKEAEQQCAYQALQKLKEAK 238
>gi|385229953|ref|YP_005789869.1| ribonuclease III [Helicobacter pylori Puno135]
gi|344336391|gb|AEN18352.1| ribonuclease III [Helicobacter pylori Puno135]
Length = 238
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 154 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 206
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 100
++++ KSKK+AE A A +LKE
Sbjct: 207 QDKIYATAKGKSKKEAEQQCAYQALQKLKEAK 238
>gi|385220515|ref|YP_005781987.1| ribonuclease III [Helicobacter pylori India7]
gi|317009322|gb|ADU79902.1| ribonuclease III [Helicobacter pylori India7]
Length = 239
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKIYATAKGKSKKEAEQQCAYQALQKLKE 237
>gi|420400256|ref|ZP_14899457.1| ribonuclease III [Helicobacter pylori CPY3281]
gi|393017201|gb|EJB18354.1| ribonuclease III [Helicobacter pylori CPY3281]
Length = 238
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 154 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 206
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 100
++++ KSKK+AE A A +LKE
Sbjct: 207 QDKIYATAKGKSKKEAEQQCAYQALQKLKEAK 238
>gi|451944546|ref|YP_007465182.1| ribonuclease III [Corynebacterium halotolerans YIM 70093 = DSM
44683]
gi|451903933|gb|AGF72820.1| ribonuclease III [Corynebacterium halotolerans YIM 70093 = DSM
44683]
Length = 249
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQE + +PVY + +G H TF +TV V G++ +KK AE +A
Sbjct: 177 WKTTLQERLAELRLDMPVYASTSTGPEHDLTFTATVSVAGQLLGTGTGPNKKLAEQESAH 236
Query: 91 VAYMRLKE 98
AY L+E
Sbjct: 237 QAYRALRE 244
>gi|420422011|ref|ZP_14921089.1| ribonuclease III [Helicobacter pylori NQ4110]
gi|393038529|gb|EJB39563.1| ribonuclease III [Helicobacter pylori NQ4110]
Length = 239
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYYALQKLKE 237
>gi|420404397|ref|ZP_14903580.1| ribonuclease III [Helicobacter pylori CPY6261]
gi|393018276|gb|EJB19427.1| ribonuclease III [Helicobacter pylori CPY6261]
Length = 238
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 154 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 206
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 100
++++ KSKK+AE A A +LKE
Sbjct: 207 QDKIYATAKGKSKKEAEQQCAYQALQKLKEAK 238
>gi|310779301|ref|YP_003967634.1| RNAse III [Ilyobacter polytropus DSM 2926]
gi|309748624|gb|ADO83286.1| RNAse III [Ilyobacter polytropus DSM 2926]
Length = 237
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 22 TNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKS 80
++ +D + +K +LQE +Q+E +P Y K+ G H +F V++ E+ ++
Sbjct: 154 IDENEDLIDFKTILQEFSQREYKVIPSYEVIKEMGPDHRKSFEIAVKINDELMGLGTGRN 213
Query: 81 KKQAEMSAAKVAYMRL 96
KK AE SAA+ A +L
Sbjct: 214 KKSAEQSAARNACRKL 229
>gi|217033708|ref|ZP_03439135.1| hypothetical protein HP9810_5g50 [Helicobacter pylori 98-10]
gi|216943897|gb|EEC23334.1| hypothetical protein HP9810_5g50 [Helicobacter pylori 98-10]
Length = 238
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 154 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 206
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 100
++++ KSKK+AE A A +LKE
Sbjct: 207 QDKIYATAKGKSKKEAEQQCAYQALQKLKEAK 238
>gi|420396496|ref|ZP_14895715.1| ribonuclease III [Helicobacter pylori CPY1313]
gi|393013354|gb|EJB14530.1| ribonuclease III [Helicobacter pylori CPY1313]
Length = 239
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 100
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKIYATAKGKSKKEAEQQCAYQALQKLKEAK 239
>gi|302342152|ref|YP_003806681.1| ribonuclease III [Desulfarculus baarsii DSM 2075]
gi|301638765|gb|ADK84087.1| ribonuclease III [Desulfarculus baarsii DSM 2075]
Length = 237
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK +LQE Q++ P Y T +SG H TF ++E+ + KSKK+AE +AA
Sbjct: 165 YKTMLQERVQEDLRLTPRYRTIDESGPDHDKTFSVSIEINDRQLAMGAGKSKKEAEQNAA 224
Query: 90 K 90
+
Sbjct: 225 R 225
>gi|150402698|ref|YP_001329992.1| ribonuclease III [Methanococcus maripaludis C7]
gi|150033728|gb|ABR65841.1| Ribonuclease III [Methanococcus maripaludis C7]
Length = 229
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
YK LQE + + N ++ GE H F+ V+ G ++ KSKK+AEM AAK
Sbjct: 159 YKTRLQEFPELNNKTIEYINLEEVGEPHDKKFIVAVKSGRKMLGKGTGKSKKEAEMKAAK 218
Query: 91 VAYMRL 96
A ++L
Sbjct: 219 NALLKL 224
>gi|420398911|ref|ZP_14898122.1| ribonuclease III [Helicobacter pylori CPY1962]
gi|393013140|gb|EJB14317.1| ribonuclease III [Helicobacter pylori CPY1962]
Length = 238
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 154 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 206
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 100
++++ KSKK+AE A A +LKE
Sbjct: 207 QDKIYATAKGKSKKEAEQQCAYQALQKLKEAK 238
>gi|187950663|gb|AAI37478.1| Adenosine deaminase, RNA-specific, B2 (RED2 homolog rat) [Homo
sapiens]
gi|187954983|gb|AAI40853.1| Adenosine deaminase, RNA-specific, B2 (RED2 homolog rat) [Homo
sapiens]
Length = 739
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 87
SV KN L +L + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 123 SVAPKNALVQLHELRP-GLQYRTVSQTGPVHAPVFAVAVEVNGLTFEGTG-PTKKKAKMR 180
Query: 88 AAKVAYMRLKE-PNPSQ-------GPALVSPDIQAQADYSSSSLQ 124
AA++A + PN Q GP + QAD+ + Q
Sbjct: 181 AAELALRSFVQFPNACQAHLAMGGGPGPGTDFTSDQADFPDTLFQ 225
>gi|386813044|ref|ZP_10100269.1| ribonuclease III rncS [planctomycete KSU-1]
gi|386405314|dbj|GAB63150.1| ribonuclease III rncS [planctomycete KSU-1]
Length = 250
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 16 QLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFS 74
++ ++ NQ + + YK++LQ+ +QKE P Y +Q G H +F V + G +
Sbjct: 149 EIDIVCKNQHEKN--YKSILQQYSQKEYGVTPSYRVLQQIGPDHGKSFEVIVLIKGNEYG 206
Query: 75 GQGAKSKKQAEMSAAK 90
KSKK+AE SAAK
Sbjct: 207 RGWGKSKKEAEQSAAK 222
>gi|385215924|ref|YP_005775881.1| ribonuclease III [Helicobacter pylori F32]
gi|317180453|dbj|BAJ58239.1| ribonuclease III [Helicobacter pylori F32]
Length = 238
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 154 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 206
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 207 QDKIYATAKGKSKKEAEQQCAYQALQKLKE 236
>gi|383858469|ref|XP_003704724.1| PREDICTED: double-stranded RNA-specific editase Adar-like
[Megachile rotundata]
Length = 621
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 14/120 (11%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYM 94
L EL Y + +Q+G +HAP F V++ G+ + G+G ++KK A+ +AA++A
Sbjct: 41 LNELKTGAVYKV----VEQTGPTHAPIFTIAVQIDGQTYEGKG-RTKKMAKHAAAELALR 95
Query: 95 RLKE----PNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGRLVFNPNSMPK 150
+ + P Q P I + D++ S+VT +H + L P S K
Sbjct: 96 NIIQFRNTPEVHQAINTCQPSIPLEPDFT-----SDVTERDNHLVNAFKTLTQEPKSTSK 150
>gi|8922077|ref|NP_061172.1| double-stranded RNA-specific editase B2 [Homo sapiens]
gi|33112436|sp|Q9NS39.1|RED2_HUMAN RecName: Full=Double-stranded RNA-specific editase B2; AltName:
Full=RNA-dependent adenosine deaminase 3; AltName:
Full=RNA-editing deaminase 2; AltName: Full=RNA-editing
enzyme 2; AltName: Full=dsRNA adenosine deaminase B2
gi|8650031|gb|AAF78094.1| double-stranded RNA specific adenosine deaminase [Homo sapiens]
gi|119606914|gb|EAW86508.1| adenosine deaminase, RNA-specific, B2 (RED2 homolog rat) [Homo
sapiens]
Length = 739
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 87
SV KN L +L + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 123 SVAPKNALVQLHELRP-GLQYRTVSQTGPVHAPVFAVAVEVNGLTFEGTG-PTKKKAKMR 180
Query: 88 AAKVAYMRLKE-PNPSQ-------GPALVSPDIQAQADYSSSSLQ 124
AA++A + PN Q GP + QAD+ + Q
Sbjct: 181 AAELALRSFVQFPNACQAHLAMGGGPGPGTDFTSDQADFPDTLFQ 225
>gi|387908031|ref|YP_006338365.1| ribonuclease III [Helicobacter pylori XZ274]
gi|387572966|gb|AFJ81674.1| ribonuclease III [Helicobacter pylori XZ274]
Length = 239
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 100
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKIYATARGKSKKEAEQQCAYQALQKLKEAK 239
>gi|335296679|ref|XP_003130894.2| PREDICTED: double-stranded RNA-specific editase B2-like [Sus
scrofa]
Length = 1000
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 51/108 (47%), Gaps = 16/108 (14%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 87
SV KN L +L + L Q+G HAP F V+V G F G G +KK+A+M
Sbjct: 389 SVAPKNALVQLHELRP-GLQYRTVSQTGPVHAPVFAVAVDVNGLTFEGTGP-TKKKAKMR 446
Query: 88 AAKVAYMRLKE-PNPSQ---------GPALVSPDIQA-QADYSSSSLQ 124
AA++A + PN Q GPA PD + QAD+ + Q
Sbjct: 447 AAELALRSFVQFPNACQAHLALGGSGGPA---PDFTSDQADFPDTLFQ 491
>gi|333024194|ref|ZP_08452258.1| putative ribonuclease III [Streptomyces sp. Tu6071]
gi|332744046|gb|EGJ74487.1| putative ribonuclease III [Streptomyces sp. Tu6071]
Length = 314
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E +P Y + G H TF + VGG + +SKK+AE AA+
Sbjct: 216 WKTSLQELTAMEGLGVPEYLVTEEGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 275
>gi|207092393|ref|ZP_03240180.1| ribonuclease III [Helicobacter pylori HPKX_438_AG0C1]
Length = 239
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 25 EDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQ 83
E SV YK LQEL Q + +P Y K+ G H F + + ++++ KSKK+
Sbjct: 163 EHLSVDYKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYIQDKMYATAKGKSKKE 222
Query: 84 AEMSAAKVAYMRLKE 98
AE A A +LKE
Sbjct: 223 AEQQCAYYALQKLKE 237
>gi|296130133|ref|YP_003637383.1| ribonuclease III [Cellulomonas flavigena DSM 20109]
gi|296021948|gb|ADG75184.1| ribonuclease III [Cellulomonas flavigena DSM 20109]
Length = 240
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 31/66 (46%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL+ P Y G HA TF ++ VGGEV +KK AE AA
Sbjct: 159 WKTSLQELSASLGLGAPYYEVTGEGPDHARTFTASAVVGGEVRGTGTGPAKKIAEQEAAS 218
Query: 91 VAYMRL 96
A+ L
Sbjct: 219 AAWTAL 224
>gi|260835858|ref|XP_002612924.1| hypothetical protein BRAFLDRAFT_227842 [Branchiostoma floridae]
gi|229298306|gb|EEN68933.1| hypothetical protein BRAFLDRAFT_227842 [Branchiostoma floridae]
Length = 280
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
L KN L +L + L QSG HAP F+ +VEV G+ F G+G +KK+A++ A
Sbjct: 36 ALPKNALMQLNELRP-GLQFKFVSQSGPVHAPEFIMSVEVNGQTFEGRGG-TKKKAKLHA 93
Query: 89 AKVA 92
A+ A
Sbjct: 94 AEQA 97
>gi|403721061|ref|ZP_10944286.1| ribonuclease III [Gordonia rhizosphera NBRC 16068]
gi|403207401|dbj|GAB88617.1| ribonuclease III [Gordonia rhizosphera NBRC 16068]
Length = 244
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSAA 89
+K LQEL+ + Y P Y +G H F + V GE GQG ++KK+AE AA
Sbjct: 172 WKTSLQELSAEGGYGPPHYQITSTGPDHNKEFTAVAVVAGESL-GQGTGRTKKEAEQKAA 230
Query: 90 KVAYMRLKE 98
+A+ L E
Sbjct: 231 ALAWQALTE 239
>gi|350567556|ref|ZP_08935966.1| ribonuclease 3 [Propionibacterium avidum ATCC 25577]
gi|348662627|gb|EGY79284.1| ribonuclease 3 [Propionibacterium avidum ATCC 25577]
Length = 259
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K VLQE ++ + P Y+ SG H + + EV G++ + +KK+AE AA+
Sbjct: 187 WKTVLQEYCAEQGFEAPRYDIVGSGPDHNRRYCARAEVDGKLHAAYTGHNKKEAEQGAAQ 246
Query: 91 VAYMRLKEP 99
+A L P
Sbjct: 247 LAVAALIPP 255
>gi|255569488|ref|XP_002525711.1| hypothetical protein RCOM_1321840 [Ricinus communis]
gi|223535011|gb|EEF36694.1| hypothetical protein RCOM_1321840 [Ricinus communis]
Length = 162
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQ-AEMSA 88
+YK LQEL ++ ++LP Y+T + G+ H P F +TV V G FS + A+ +A
Sbjct: 1 MYKTKLQELCHQKTWSLPEYSTTKVGQDHNPIFHATVIVNGYSFSSSSPSKSSKLAQNNA 60
Query: 89 AKVAY 93
AK+A+
Sbjct: 61 AKLAF 65
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF 73
LYKN+LQ AQK LP+Y+ ++ G HA F V + G+ +
Sbjct: 81 LYKNLLQSYAQKRGLPLPMYSCERQGPPHASLFKCKVTIDGKSY 124
>gi|291409122|ref|XP_002720862.1| PREDICTED: adenosine deaminase, RNA-specific, B2-like [Oryctolagus
cuniculus]
Length = 734
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 87
SV KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 112 SVTPKNALVQLHELKP-GLQYRMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMR 169
Query: 88 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
AA++A + PN Q + D++S
Sbjct: 170 AAELALKSFVQFPNACQAHLAMGSGTSPCTDFTS 203
>gi|195454350|ref|XP_002074202.1| GK12745 [Drosophila willistoni]
gi|194170287|gb|EDW85188.1| GK12745 [Drosophila willistoni]
Length = 845
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 34 VLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFS-GQGAKSKKQAEMSAAKV 91
VL EL K + P Y +Q +G +H TF+ +VE+ G+ ++ G SKK+A+++AAK+
Sbjct: 775 VLNELTSKNKWTPPQYVLQQNTGPAHMRTFLFSVEINGQKYTPSNGCNSKKEAKLNAAKL 834
Query: 92 AYMRL 96
L
Sbjct: 835 CLQAL 839
>gi|302522137|ref|ZP_07274479.1| ribonuclease III [Streptomyces sp. SPB78]
gi|302431032|gb|EFL02848.1| ribonuclease III [Streptomyces sp. SPB78]
Length = 286
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E +P Y + G H TF + VGG + +SKK+AE AA+
Sbjct: 188 WKTSLQELTAMEGLGVPEYLVTEEGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 247
>gi|257784655|ref|YP_003179872.1| ribonuclease III [Atopobium parvulum DSM 20469]
gi|257473162|gb|ACV51281.1| ribonuclease III [Atopobium parvulum DSM 20469]
Length = 243
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 28 SVLYKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGG-EVFSGQGAKSKKQAE 85
SV K+ LQE Q + A P Y +SG +H PTF + V V G +V GQG SKK AE
Sbjct: 158 SVSPKSRLQEAVQAQGKATPEYKLIGESGPAHTPTFTAVVFVDGLKVGRGQG-PSKKAAE 216
Query: 86 MSAAKVAYMRL 96
AA+ A +RL
Sbjct: 217 SEAAQDALVRL 227
>gi|403718446|ref|ZP_10943322.1| ribonuclease III [Kineosphaera limosa NBRC 100340]
gi|403208467|dbj|GAB98005.1| ribonuclease III [Kineosphaera limosa NBRC 100340]
Length = 267
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQELA ++ P Y + G H F + V + EV +SKK+AE AA+
Sbjct: 173 WKTSLQELAASGSFGSPEYRVSEEGPDHEKVFTAHVVISEEVLGDGNGRSKKEAEQKAAE 232
Query: 91 VAYMRL 96
A+ L
Sbjct: 233 QAWKEL 238
>gi|421718283|ref|ZP_16157582.1| ribonuclease III [Helicobacter pylori R038b]
gi|407221549|gb|EKE91353.1| ribonuclease III [Helicobacter pylori R038b]
Length = 239
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 100
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKIYATAKGKSKKEAEQQCAYYALQKLKEAK 239
>gi|296206058|ref|XP_002750047.1| PREDICTED: double-stranded RNA-specific editase B2 [Callithrix
jacchus]
Length = 998
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 5/110 (4%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 87
SV KN L +L + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 379 SVAPKNALVQLHELRP-GLQYRTVSQTGPVHAPVFAVAVEVNGLTFEGTG-PTKKKAKMR 436
Query: 88 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQ 136
AA++A + PN Q + D++S Q++ L H +
Sbjct: 437 AAELALRSFVQFPNACQAHLAMGGGPGPGTDFTSD--QADFPDTLFHEFE 484
>gi|318056548|ref|ZP_07975271.1| ribonuclease III [Streptomyces sp. SA3_actG]
gi|318076722|ref|ZP_07984054.1| ribonuclease III [Streptomyces sp. SA3_actF]
Length = 275
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E +P Y + G H TF + VGG + +SKK+AE AA+
Sbjct: 177 WKTSLQELTAMEGLGVPEYLVTEEGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 236
>gi|326203626|ref|ZP_08193490.1| ribonuclease III [Clostridium papyrosolvens DSM 2782]
gi|325986446|gb|EGD47278.1| ribonuclease III [Clostridium papyrosolvens DSM 2782]
Length = 236
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 31 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSA 88
YK LQEL Q+ Y+ T Q G H TFV+ V++ G V GQG SKK+AE +A
Sbjct: 167 YKTQLQELVQQNGEQQISYSVTDQFGPDHNKTFVTEVKING-VTQGQGKGHSKKEAEQNA 225
Query: 89 AKVAYMRLK 97
AK A LK
Sbjct: 226 AKDALNNLK 234
>gi|327274458|ref|XP_003221994.1| PREDICTED: double-stranded RNA-specific editase B2-like [Anolis
carolinensis]
Length = 714
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 87
SV KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 96 SVTPKNALVQLHELKP-GLQYKMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMR 153
Query: 88 AAKVAYMR-LKEPNPSQGPALVSPDIQAQADYSS 120
AA++A ++ PN Q + D++S
Sbjct: 154 AAELALKSFIQFPNACQAHFAMGNCFNPSTDFTS 187
>gi|229820101|ref|YP_002881627.1| ribonuclease III [Beutenbergia cavernae DSM 12333]
gi|229566014|gb|ACQ79865.1| ribonuclease III [Beutenbergia cavernae DSM 12333]
Length = 252
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL+ + P+Y+ G H F + V + V+ +KK AE AA+
Sbjct: 171 WKTSLQELSAELGLGAPLYDVDGVGPDHDRRFTAHVVIAERVWGSGTGSAKKHAEQEAAR 230
Query: 91 VAYMRLKE 98
AY L+E
Sbjct: 231 TAYAALRE 238
>gi|119953483|ref|YP_945692.1| ribonuclease III [Borrelia turicatae 91E135]
gi|119862254|gb|AAX18022.1| ribonuclease III [Borrelia turicatae 91E135]
Length = 244
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 4 KQIELLRSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYN-TKQSGESHAPTF 62
K ++ + + + +MF D YK++LQE QK+ P Y K+ G H F
Sbjct: 148 KTLDFVIELFEVHIRLMFN--RGDFKDYKSLLQEYVQKKYKISPTYKLAKELGPDHNKVF 205
Query: 63 VSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
+ V + S KSKK+AEM AA++A
Sbjct: 206 CVELYVNDKFISNGKGKSKKEAEMIAAEMA 235
>gi|108762302|ref|YP_631944.1| ribonuclease III [Myxococcus xanthus DK 1622]
gi|123074286|sp|Q1D5X9.1|RNC_MYXXD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|108466182|gb|ABF91367.1| ribonuclease III [Myxococcus xanthus DK 1622]
Length = 260
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK +LQE+A + P Y +SG H+ F + +G F+ +SKK+AE SAA
Sbjct: 173 YKTLLQEMAHERLKLQPRYRVVSESGPEHSKVFEVELMLGETAFARATGRSKKEAEQSAA 232
Query: 90 KVAYMRLKE 98
+ +L+E
Sbjct: 233 QATLEKLRE 241
>gi|456875951|gb|EMF91131.1| ribonuclease III [Leptospira santarosai str. ST188]
Length = 248
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 31 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEV-FSGQGAKSKKQAEMSA 88
YK LQE +QK +LPVY K +SG H+ F +V + + SG GA SKK AE +A
Sbjct: 177 YKTQLQEYSQKHFKSLPVYRIKGESGPDHSKMFQVSVRIRDKWEASGYGA-SKKTAEQNA 235
Query: 89 AKVAYMRLKE 98
AK + R+++
Sbjct: 236 AKELFNRIRK 245
>gi|365157110|ref|ZP_09353391.1| ribonuclease 3 [Bacillus smithii 7_3_47FAA]
gi|363625844|gb|EHL76855.1| ribonuclease 3 [Bacillus smithii 7_3_47FAA]
Length = 243
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
+K LQE+ Q++ + Y Q G +H FVS V + G+V +SKK+AE AA
Sbjct: 172 FKTQLQEMVQRDGNGILTYRILQEKGPAHHREFVSEVALNGQVLGVGTGRSKKEAEQRAA 231
Query: 90 KVAYMRLKE 98
+ A +LK+
Sbjct: 232 EQALSKLKQ 240
>gi|83951643|ref|ZP_00960375.1| ribonuclease III [Roseovarius nubinhibens ISM]
gi|83836649|gb|EAP75946.1| ribonuclease III [Roseovarius nubinhibens ISM]
Length = 227
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 21 FTNQEDDSVLYKNVLQELAQKEAYALPVYN-TKQSGESHAPTF--VSTVEVGGEVFSGQG 77
T E D+ K LQE AQ A P Y +SG HAP F V+ +E G E S G
Sbjct: 148 ITRVEADARDAKTALQEWAQARGLAPPRYEEVARSGPDHAPEFTIVARLETGEEAASKAG 207
Query: 78 AKSKKQAEMSAAK 90
SK+QAE +AAK
Sbjct: 208 --SKRQAEQAAAK 218
>gi|410449758|ref|ZP_11303811.1| ribonuclease III [Leptospira sp. Fiocruz LV3954]
gi|422005221|ref|ZP_16352416.1| ribonuclease III [Leptospira santarosai serovar Shermani str. LT
821]
gi|410016515|gb|EKO78594.1| ribonuclease III [Leptospira sp. Fiocruz LV3954]
gi|417256076|gb|EKT85516.1| ribonuclease III [Leptospira santarosai serovar Shermani str. LT
821]
Length = 248
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 31 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEV-FSGQGAKSKKQAEMSA 88
YK LQE +QK +LPVY K +SG H+ F +V + + SG GA SKK AE +A
Sbjct: 177 YKTQLQEYSQKHFKSLPVYRIKGESGPDHSKMFQVSVRIRDKWEASGYGA-SKKTAEQNA 235
Query: 89 AKVAYMRLKE 98
AK + R+++
Sbjct: 236 AKELFNRIRK 245
>gi|428775122|ref|YP_007166909.1| RNAse III [Halothece sp. PCC 7418]
gi|428689401|gb|AFZ42695.1| RNAse III [Halothece sp. PCC 7418]
Length = 228
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK LQE A +P Y+ +Q +G HA F V +G EV+ +SKK AE AA
Sbjct: 155 YKGQLQEWALAYCGLIPRYSIRQETGADHAKEFTVEVRIGSEVYGVGVGESKKTAEKRAA 214
Query: 90 KVA 92
K A
Sbjct: 215 KAA 217
>gi|301611383|ref|XP_002935222.1| PREDICTED: double-stranded RNA-specific editase B2-like [Xenopus
(Silurana) tropicalis]
Length = 731
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE-PNPSQGPALVSPD 111
Q+G HAP F VEV G F G G +KK+A+M AA++A + PN Q +
Sbjct: 133 QTGPVHAPVFSVAVEVNGLTFEGTGP-TKKKAKMRAAELALKSFVQFPNACQAHFAMGNC 191
Query: 112 IQAQADYSS 120
I D++S
Sbjct: 192 ISPSTDFTS 200
>gi|357392059|ref|YP_004906900.1| putative ribonuclease 3 [Kitasatospora setae KM-6054]
gi|311898536|dbj|BAJ30944.1| putative ribonuclease 3 [Kitasatospora setae KM-6054]
Length = 269
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL +P Y +SG H TF + V G+ +SKK+AE AA+
Sbjct: 182 WKTSLQELTAAVGLGVPEYVVTESGPDHEKTFTAAARVAGQDHGSGSGRSKKEAEQKAAE 241
Query: 91 VAYMRLK 97
A+ +K
Sbjct: 242 SAWRAIK 248
>gi|154505348|ref|ZP_02042086.1| hypothetical protein RUMGNA_02863 [Ruminococcus gnavus ATCC 29149]
gi|153794391|gb|EDN76811.1| ribonuclease III [Ruminococcus gnavus ATCC 29149]
Length = 252
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 19 MMFTNQEDDSVLY--KNVLQELAQKEAY-ALPVYNTKQSGESHAPTFVSTVEVGGEVFSG 75
+ T+ E+ + Y K +LQE+ Q + + + K+ G H +F V++G V+
Sbjct: 168 FILTDLENKKLFYDSKTILQEIVQADMEEGISYHLIKEEGPDHNKSFTVEVKIGETVYGT 227
Query: 76 QGAKSKKQAEMSAAKVAYMRLKEPN 100
++KK AE AA A ++LK+ N
Sbjct: 228 GSGRTKKAAEQEAAYKAILKLKKQN 252
>gi|420458504|ref|ZP_14957314.1| ribonuclease III [Helicobacter pylori Hp A-26]
gi|393076025|gb|EJB76779.1| ribonuclease III [Helicobacter pylori Hp A-26]
Length = 239
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYQALQKLKE 237
>gi|383749663|ref|YP_005424766.1| ribonuclease III [Helicobacter pylori ELS37]
gi|380874409|gb|AFF20190.1| ribonuclease III [Helicobacter pylori ELS37]
Length = 239
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYQALQKLKE 237
>gi|328955642|ref|YP_004372975.1| RNAse III [Coriobacterium glomerans PW2]
gi|328455966|gb|AEB07160.1| RNAse III [Coriobacterium glomerans PW2]
Length = 241
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 32 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSAA 89
K++LQE Q++ P Y SG +H PTF + V V G V G+G SKK+AE SAA
Sbjct: 162 KSILQERVQEDHGEPPCYKLVGMSGPAHEPTFTAVVLVDG-VRCGRGTGSSKKEAEASAA 220
Query: 90 KVAYMRL 96
+ A R+
Sbjct: 221 RDALERM 227
>gi|420427294|ref|ZP_14926339.1| ribonuclease III [Helicobacter pylori Hp A-9]
gi|393042227|gb|EJB43238.1| ribonuclease III [Helicobacter pylori Hp A-9]
Length = 239
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYQALQKLKE 237
>gi|338535028|ref|YP_004668362.1| ribonuclease III [Myxococcus fulvus HW-1]
gi|337261124|gb|AEI67284.1| ribonuclease III [Myxococcus fulvus HW-1]
Length = 257
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK +LQELA + P Y +SG H+ F + +G F+ +SKK+AE SAA
Sbjct: 170 YKTLLQELAHERLKLQPRYRVVSESGPEHSKVFEVELVLGETAFARASGRSKKEAEQSAA 229
Query: 90 KVAYMRLKE 98
+ +L++
Sbjct: 230 QATLEKLRQ 238
>gi|195037815|ref|XP_001990356.1| GH18282 [Drosophila grimshawi]
gi|193894552|gb|EDV93418.1| GH18282 [Drosophila grimshawi]
Length = 833
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 34 VLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFS-GQGAKSKKQAEMSAAKV 91
VL EL K + P Y + SG SH+ F+ +VE+ G+ ++ Q +KK+A+M+AAK+
Sbjct: 763 VLNELTSKNRWTPPQYTLRGDSGPSHSRMFLFSVEINGQSYTPAQSCNNKKEAKMNAAKL 822
Query: 92 AYMRL 96
L
Sbjct: 823 CLRAL 827
>gi|238650709|ref|YP_002916562.1| ribonuclease III [Rickettsia peacockii str. Rustic]
gi|259646552|sp|C4K1R3.1|RNC_RICPU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|238624807|gb|ACR47513.1| ribonuclease III [Rickettsia peacockii str. Rustic]
Length = 227
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 32 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
K LQE AQ + LP+Y K+ G SHA TF V+V +G G + K+AE +AA+
Sbjct: 160 KTALQEWAQASDHHLPIYRLIKREGASHASTFTVLVKVKDYEQTGTG-HAIKEAEKNAAR 218
Query: 91 VAYMRLK 97
RLK
Sbjct: 219 SLLHRLK 225
>gi|147906536|ref|NP_001091256.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Xenopus
laevis]
gi|121308150|emb|CAM07152.1| double stranded RNA activated protein kinase 1 [Xenopus laevis]
Length = 578
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
Y +L EL QK + + + G+ H P F +G E F K+KK+A+ AA
Sbjct: 119 YVGILHELCQKHTLIVTFLDERH-GQPHIPEFFCKAVIGKEEFPKAKGKNKKEAKRKAAH 177
Query: 91 VAYMRLKEPNPS 102
+A + LK P+
Sbjct: 178 LALISLKSKYPN 189
>gi|42523419|ref|NP_968799.1| ribonuclease III [Bdellovibrio bacteriovorus HD100]
gi|81617308|sp|Q6MLR5.1|RNC_BDEBA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|39575625|emb|CAE79792.1| ribonuclease III [Bdellovibrio bacteriovorus HD100]
Length = 234
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Query: 2 LEKQIELLRSMQRSQ---LSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGES 57
L+ E+ RS R + L+ ED YK LQEL QK + P Y + G
Sbjct: 131 LDGGFEVARSFIRQEFVPLADRVCGHEDFERDYKTRLQELVQKSSKETPRYEVLAEEGPP 190
Query: 58 HAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAY-MRLKEPN 100
H F+ V+V +V++ +SKK AE AAK A M+ KE N
Sbjct: 191 HDREFLVCVKVKEDVWAQGRGRSKKNAEQMAAKNALEMKYKETN 234
>gi|421711672|ref|ZP_16151015.1| ribonuclease III [Helicobacter pylori R030b]
gi|407212821|gb|EKE82683.1| ribonuclease III [Helicobacter pylori R030b]
Length = 239
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYQALQKLKE 237
>gi|300783718|ref|YP_003764009.1| ribonuclease III [Amycolatopsis mediterranei U32]
gi|384146954|ref|YP_005529770.1| ribonuclease III [Amycolatopsis mediterranei S699]
gi|399535602|ref|YP_006548264.1| ribonuclease III [Amycolatopsis mediterranei S699]
gi|299793232|gb|ADJ43607.1| ribonuclease III [Amycolatopsis mediterranei U32]
gi|340525108|gb|AEK40313.1| ribonuclease III [Amycolatopsis mediterranei S699]
gi|398316372|gb|AFO75319.1| ribonuclease III [Amycolatopsis mediterranei S699]
Length = 234
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 2 LEKQIELLRSMQRSQLSMMFTNQ--EDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHA 59
LE IE+ R + + + +K LQEL +P Y + +G H
Sbjct: 124 LEHGIEIARKLVHHLFDGLLAEAPLRGAGLDWKTSLQELTASAGLGVPEYKVEDTGPDHR 183
Query: 60 PTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
F +TV V G +KK+AE AA+ A+ L
Sbjct: 184 KEFTATVLVAGRPLGHGAGSTKKEAEQKAAETAWRSL 220
>gi|345793477|ref|XP_544281.3| PREDICTED: double-stranded RNA-specific editase B2 [Canis lupus
familiaris]
Length = 922
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 87
SV KN L +L L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 170 SVAPKNALVQLHDLRP-GLQYRMVSQTGPVHAPVFAVAVEVNGLTFEGTG-PTKKKAKMR 227
Query: 88 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
AA++A + PN Q + + D++S
Sbjct: 228 AAELALRSFVQFPNACQAQLAMGGGVGPSPDFTS 261
>gi|116748321|ref|YP_845008.1| ribonuclease III [Syntrophobacter fumaroxidans MPOB]
gi|189043370|sp|A0LGM1.1|RNC_SYNFM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|116697385|gb|ABK16573.1| RNAse III [Syntrophobacter fumaroxidans MPOB]
Length = 242
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK LQEL Q PVY ++ G H TF V + G+V +G KSKK A+ +AA
Sbjct: 168 YKTQLQELTQARYKLTPVYVLDREEGPDHDKTFHMNVVLEGQVLAGGSGKSKKDAQQAAA 227
Query: 90 KVA 92
+ A
Sbjct: 228 EKA 230
>gi|406950556|gb|EKD80794.1| hypothetical protein ACD_40C00009G0005 [uncultured bacterium]
Length = 230
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 10/91 (10%)
Query: 1 MLEKQIELLRSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYN-TKQSGESHA 59
+LEK + +Q++Q + +D+ K++LQE+AQ + P+Y +SG H
Sbjct: 140 ILEKHL-----LQKAQAVLQTETYKDN----KSLLQEIAQSRYKSTPLYTLISESGPDHD 190
Query: 60 PTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
FV VE+G E ++ KSK+ A+ AAK
Sbjct: 191 KQFVMRVEIGDESYAQGTGKSKQTAQEDAAK 221
>gi|16803845|ref|NP_465330.1| ribonuclease III [Listeria monocytogenes EGD-e]
gi|386050782|ref|YP_005968773.1| ribonuclease III [Listeria monocytogenes FSL R2-561]
gi|404284301|ref|YP_006685198.1| ribonuclease III [Listeria monocytogenes SLCC2372]
gi|405758856|ref|YP_006688132.1| ribonuclease III [Listeria monocytogenes SLCC2479]
gi|22654060|sp|Q8Y691.1|RNC_LISMO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|16411259|emb|CAC99883.1| rncS [Listeria monocytogenes EGD-e]
gi|346424628|gb|AEO26153.1| ribonuclease III [Listeria monocytogenes FSL R2-561]
gi|404233803|emb|CBY55206.1| ribonuclease III [Listeria monocytogenes SLCC2372]
gi|404236738|emb|CBY58140.1| ribonuclease III [Listeria monocytogenes SLCC2479]
Length = 229
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 86
+V YK LQE+ Q++ L Y+ ++G +H F + V V G+V ++KKQAE
Sbjct: 157 TVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQ 216
Query: 87 SAAKVAYMRL 96
SAA+ A +L
Sbjct: 217 SAAQFAINKL 226
>gi|385226898|ref|YP_005786822.1| ribonuclease III [Helicobacter pylori SNT49]
gi|344331811|gb|AEN16841.1| ribonuclease III [Helicobacter pylori SNT49]
Length = 239
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYQALQKLKE 237
>gi|416999129|ref|ZP_11939798.1| ribonuclease III [Veillonella parvula ACS-068-V-Sch12]
gi|333977282|gb|EGL78141.1| ribonuclease III [Veillonella parvula ACS-068-V-Sch12]
Length = 246
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK +LQE Q++ VY+ +SG H TF VE+ G + KSKK AE AA
Sbjct: 176 YKTLLQEYVQRDGDKHIVYHLLSESGPDHDKTFHMEVEINGVTYEAGSGKSKKIAEQHAA 235
Query: 90 KVAYMRL 96
++ +L
Sbjct: 236 QLTLEKL 242
>gi|340757909|ref|ZP_08694501.1| ribonuclease 3 [Fusobacterium varium ATCC 27725]
gi|251836195|gb|EES64732.1| ribonuclease 3 [Fusobacterium varium ATCC 27725]
Length = 235
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 18 SMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQ 76
S+ ++ +D + +K +LQE +Q+E +P Y +++G H F V +G G
Sbjct: 149 SIDHVDKNEDILDFKTILQEYSQREYKIIPSYEVIRETGPDHQKVFEIEVRIGERTGRGT 208
Query: 77 GAKSKKQAEMSAAK 90
G K+KK AE SAAK
Sbjct: 209 G-KNKKSAEQSAAK 221
>gi|163916108|gb|AAI57422.1| Double stranded RNA activated protein kinase 1 [Xenopus laevis]
Length = 578
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
Y +L EL QK + + + G+ H P F +G E F K+KK+A+ AA
Sbjct: 119 YVGILHELCQKHTLIVTFLDERH-GQPHIPEFFCKAVIGKEEFPKAKGKNKKEAKRKAAH 177
Query: 91 VAYMRLKEPNPS 102
+A + LK P+
Sbjct: 178 LALISLKSKYPN 189
>gi|422416325|ref|ZP_16493282.1| ribonuclease III [Listeria innocua FSL J1-023]
gi|313623280|gb|EFR93523.1| ribonuclease III [Listeria innocua FSL J1-023]
Length = 229
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 86
+V YK LQE+ Q++ L Y+ ++G +H +F + V V G+V ++KKQAE
Sbjct: 157 TVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKSFDAQVIVNGQVLGKGSGRTKKQAEQ 216
Query: 87 SAAKVAYMRL 96
SAA+ A +L
Sbjct: 217 SAAQFAINQL 226
>gi|426403897|ref|YP_007022868.1| ribonuclease III [Bdellovibrio bacteriovorus str. Tiberius]
gi|425860565|gb|AFY01601.1| ribonuclease III [Bdellovibrio bacteriovorus str. Tiberius]
Length = 234
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Query: 2 LEKQIELLRSMQRSQ---LSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGES 57
L+ E+ RS R + L+ ED YK LQEL QK + P Y + G
Sbjct: 131 LDGGFEVARSFIRQEFVPLADRVCGHEDFERDYKTRLQELVQKSSKETPRYEVLAEEGPP 190
Query: 58 HAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAY-MRLKEPN 100
H F+ V+V +V++ +SKK AE AAK A M+ KE N
Sbjct: 191 HDREFLVCVKVKEDVWAQGRGRSKKNAEQMAAKNALEMKYKETN 234
>gi|226374645|gb|ACO52474.1| RNA transcript variant a adenosine deaminase [Doryteuthis
opalescens]
Length = 786
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
L KN L +L + + L Q+G HAPTF VEV GEVF G G +KK+A++ AA
Sbjct: 164 LPKNALMQLNEIKP-GLEFQLMGQTGPVHAPTFNMKVEVNGEVFEGAGP-TKKKAKLQAA 221
Query: 90 KVA 92
+ A
Sbjct: 222 EKA 224
>gi|295836307|ref|ZP_06823240.1| ribonuclease III [Streptomyces sp. SPB74]
gi|295825949|gb|EFG64564.1| ribonuclease III [Streptomyces sp. SPB74]
Length = 280
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E +P Y + G H TF + VGG + +SKK+AE AA+
Sbjct: 200 WKTSLQELTAVEGLGVPEYLVTEEGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 259
>gi|269794452|ref|YP_003313907.1| RNAse III [Sanguibacter keddieii DSM 10542]
gi|269096637|gb|ACZ21073.1| RNAse III [Sanguibacter keddieii DSM 10542]
Length = 234
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSAA 89
+K LQE A + P Y ++ G HA F + V + GE+ +GQG +KK AE AA
Sbjct: 166 WKTSLQEAAAERNVGAPEYTSEGEGPDHARIFTAHVIIDGEILGTGQG-TAKKHAEQIAA 224
Query: 90 KVAYMRL 96
+ AY+ L
Sbjct: 225 EQAYVAL 231
>gi|410023898|ref|YP_006893151.1| ribonuclease III [Helicobacter pylori Rif1]
gi|410501665|ref|YP_006936192.1| ribonuclease III [Helicobacter pylori Rif2]
gi|410682185|ref|YP_006934587.1| ribonuclease III [Helicobacter pylori 26695]
gi|7531276|sp|P56118.2|RNC_HELPY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|409893826|gb|AFV41884.1| ribonuclease III [Helicobacter pylori 26695]
gi|409895555|gb|AFV43477.1| ribonuclease III [Helicobacter pylori Rif1]
gi|409897216|gb|AFV45070.1| ribonuclease III [Helicobacter pylori Rif2]
Length = 239
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYQALQKLKE 237
>gi|421719742|ref|ZP_16159026.1| ribonuclease III [Helicobacter pylori R046Wa]
gi|407221065|gb|EKE90870.1| ribonuclease III [Helicobacter pylori R046Wa]
Length = 239
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 100
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYQALQKLKEAK 239
>gi|420443654|ref|ZP_14942582.1| ribonuclease III [Helicobacter pylori Hp H-41]
gi|393061161|gb|EJB62030.1| ribonuclease III [Helicobacter pylori Hp H-41]
Length = 239
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYQALQKLKE 237
>gi|421710165|ref|ZP_16149522.1| ribonuclease III [Helicobacter pylori R018c]
gi|421723442|ref|ZP_16162696.1| ribonuclease III [Helicobacter pylori R056a]
gi|407210356|gb|EKE80235.1| ribonuclease III [Helicobacter pylori R018c]
gi|407224465|gb|EKE94241.1| ribonuclease III [Helicobacter pylori R056a]
Length = 239
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKIYATAKGKSKKEAEQQCAYQALQKLKE 237
>gi|395827514|ref|XP_003786946.1| PREDICTED: double-stranded RNA-specific editase B2 [Otolemur
garnettii]
Length = 1031
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 87
SV KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 419 SVTPKNALVQLHELKP-GLQYRTVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMR 476
Query: 88 AAKVAYMRLKE-PNPSQ 103
AA++A + PN Q
Sbjct: 477 AAELALRSFVQFPNACQ 493
>gi|348575574|ref|XP_003473563.1| PREDICTED: double-stranded RNA-specific editase B2 [Cavia
porcellus]
Length = 784
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 32 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 91
KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M AA++
Sbjct: 166 KNALVQLHELKP-GLQYRMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMRAAEL 223
Query: 92 AYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A + PN Q + D++S
Sbjct: 224 ALKSFVQFPNACQAHLAMGSSTNLCTDFTS 253
>gi|109088041|ref|XP_001118272.1| PREDICTED: double-stranded RNA-specific editase B2, partial [Macaca
mulatta]
Length = 504
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 46/101 (45%), Gaps = 10/101 (9%)
Query: 32 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 91
KN L +L + L Q+G HAP F VEV G F G G +KK+A+M AA++
Sbjct: 127 KNALVQLHELRP-GLQYRTVSQTGPVHAPVFAVAVEVNGLTFEGTG-PTKKKAKMRAAEL 184
Query: 92 AYMRLKE-PNPSQ-------GPALVSPDIQAQADYSSSSLQ 124
A + PN Q GP + QAD+ + Q
Sbjct: 185 ALRSFVQFPNACQAHLAMGGGPGPGTDFTSDQADFPDTLFQ 225
>gi|355562257|gb|EHH18851.1| Double-stranded RNA-specific editase B2 [Macaca mulatta]
Length = 614
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 46/101 (45%), Gaps = 10/101 (9%)
Query: 32 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 91
KN L +L + L Q+G HAP F VEV G F G G +KK+A+M AA++
Sbjct: 127 KNALVQLHELRP-GLQYRTVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMRAAEL 184
Query: 92 AYMRLKE-PNPSQ-------GPALVSPDIQAQADYSSSSLQ 124
A + PN Q GP + QAD+ + Q
Sbjct: 185 ALRSFVQFPNACQAHLAMGGGPGPGTDFTSDQADFPDTLFQ 225
>gi|419416411|ref|ZP_13956969.1| ribonuclease III [Helicobacter pylori P79]
gi|384375293|gb|EIE30596.1| ribonuclease III [Helicobacter pylori P79]
Length = 239
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYQALQKLKE 237
>gi|239948355|ref|ZP_04700108.1| GTP-binding protein Era [Rickettsia endosymbiont of Ixodes
scapularis]
gi|239922631|gb|EER22655.1| GTP-binding protein Era [Rickettsia endosymbiont of Ixodes
scapularis]
Length = 567
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 32 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
K LQE AQ + LP+Y K+ G +H+ TF V+V +G G S K+AE +AA+
Sbjct: 160 KTALQEWAQASDHHLPIYRLIKREGAAHSSTFTVLVKVKDYEQTGTG-HSIKEAEKNAAR 218
Query: 91 VAYMRLKEPN 100
RLK N
Sbjct: 219 SLLHRLKMTN 228
>gi|420413665|ref|ZP_14912788.1| ribonuclease III [Helicobacter pylori NQ4099]
gi|393028194|gb|EJB29281.1| ribonuclease III [Helicobacter pylori NQ4099]
Length = 239
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 100
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYQALQKLKEAK 239
>gi|309810296|ref|ZP_07704134.1| ribonuclease III [Dermacoccus sp. Ellin185]
gi|308435724|gb|EFP59518.1| ribonuclease III [Dermacoccus sp. Ellin185]
Length = 272
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQE P Y + G H F +TV V G ++KK AEM AA+
Sbjct: 176 WKTSLQEATAAAGLGAPTYVVEGEGPDHDKVFTATVLVDGRTLGAGTGRNKKSAEMIAAE 235
Query: 91 VAYMRLKE 98
A++ L++
Sbjct: 236 NAWVSLRD 243
>gi|374815505|ref|ZP_09719242.1| ribonuclease III [Treponema primitia ZAS-1]
Length = 232
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK++LQEL+Q P Y K+SG H F V V + F K+KK AE AA
Sbjct: 156 YKSLLQELSQHLYRKYPAYRLLKRSGPEHDRFFWIEVTVDDKTFGPGMGKNKKTAEQEAA 215
Query: 90 KVAY 93
++AY
Sbjct: 216 RIAY 219
>gi|308234556|ref|ZP_07665293.1| ribonuclease III [Atopobium vaginae DSM 15829]
gi|328944154|ref|ZP_08241619.1| ribonuclease III [Atopobium vaginae DSM 15829]
gi|327492123|gb|EGF23897.1| ribonuclease III [Atopobium vaginae DSM 15829]
Length = 233
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 32 KNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
K+ LQE+ QK + PVY + ++G +HAP F S V V GE+ SKK+++ AA
Sbjct: 162 KSRLQEVCQKRFHIAPVYELEDETGPAHAPQFTSAVFVDGELMGRGTGSSKKESQSIAAL 221
Query: 91 VAYMRL 96
A +L
Sbjct: 222 SALDKL 227
>gi|441206731|ref|ZP_20973264.1| ribonuclease III [Mycobacterium smegmatis MKD8]
gi|440628429|gb|ELQ90228.1| ribonuclease III [Mycobacterium smegmatis MKD8]
Length = 230
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSAA 89
+K+ LQEL P Y +G H F +TV +G E G G ++KK+AE+ AA
Sbjct: 162 WKSSLQELTAARGLGAPAYVVTSTGPDHDKEFSATVVIG-EAEYGHGVGRTKKEAELKAA 220
Query: 90 KVAYMRLKE 98
AY L E
Sbjct: 221 ASAYKTLDE 229
>gi|227833427|ref|YP_002835134.1| ribonuclease III [Corynebacterium aurimucosum ATCC 700975]
gi|262184417|ref|ZP_06043838.1| ribonuclease III [Corynebacterium aurimucosum ATCC 700975]
gi|227454443|gb|ACP33196.1| ribonuclease III [Corynebacterium aurimucosum ATCC 700975]
Length = 256
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 12 MQRSQLSMMFTNQEDDSVL------YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVST 65
+ R + +F + D++V+ +K LQEL + A+PVY+ +G H TF +
Sbjct: 151 VARGVVLKLFAAKIDNAVVSGRHMDWKTTLQELCAELKAAMPVYSATSTGPEHDQTFNAV 210
Query: 66 VEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE-PNPSQGPA 106
V G +KK AE AA+ A L+E P QG A
Sbjct: 211 ATVAGLTVGRGTGHNKKLAEQQAAEEACQALRETPLLVQGTA 252
>gi|15645286|ref|NP_207456.1| ribonuclease III [Helicobacter pylori 26695]
gi|2313785|gb|AAD07725.1| ribonuclease III (rnc) [Helicobacter pylori 26695]
Length = 240
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 156 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 208
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 100
++++ KSKK+AE A A +LKE
Sbjct: 209 QDKMYATAKGKSKKEAEQQCAYQALQKLKEAK 240
>gi|420447011|ref|ZP_14945905.1| ribonuclease III [Helicobacter pylori Hp H-43]
gi|393063984|gb|EJB64824.1| ribonuclease III [Helicobacter pylori Hp H-43]
Length = 239
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 100
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYQALQKLKEAK 239
>gi|336432239|ref|ZP_08612075.1| ribonuclease III [Lachnospiraceae bacterium 2_1_58FAA]
gi|336019179|gb|EGN48910.1| ribonuclease III [Lachnospiraceae bacterium 2_1_58FAA]
Length = 229
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 19 MMFTNQEDDSVLY--KNVLQELAQKEAY-ALPVYNTKQSGESHAPTFVSTVEVGGEVFSG 75
+ T+ E+ + Y K +LQE+ Q + + + K+ G H +F V++G V+
Sbjct: 145 FILTDLENKKLFYDSKTILQEIVQADMEEGISYHLIKEEGPDHNKSFTVEVKIGETVYGT 204
Query: 76 QGAKSKKQAEMSAAKVAYMRLKEPN 100
++KK AE AA A ++LK+ N
Sbjct: 205 GSGRTKKAAEQEAAYKAILKLKKQN 229
>gi|237785779|ref|YP_002906484.1| ribonuclease III [Corynebacterium kroppenstedtii DSM 44385]
gi|237758691|gb|ACR17941.1| ribonuclease III [Corynebacterium kroppenstedtii DSM 44385]
Length = 246
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K L E P YNT SG +H P F STV + G+V+ +KK+AE AA+
Sbjct: 181 WKTELLEKIAGRGLGEPEYNTTISGPAHDPHFTSTVSLQGKVWGHGEGHTKKEAEHHAAR 240
Query: 91 VA 92
A
Sbjct: 241 EA 242
>gi|225621561|ref|YP_002722820.1| ribonuclease III [Brachyspira hyodysenteriae WA1]
gi|225216382|gb|ACN85116.1| ribonuclease III [Brachyspira hyodysenteriae WA1]
Length = 243
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
YK + QEL QK+ P+Y + + +++ F S V V + F+ KSKK+AE +AAK
Sbjct: 163 YKTIFQELIQKKHKTSPIYKSYEYYDNNHEMFKSEVYVNDKNFALGVGKSKKEAETNAAK 222
Query: 91 VA 92
A
Sbjct: 223 KA 224
>gi|217032489|ref|ZP_03437981.1| hypothetical protein HPB128_156g19 [Helicobacter pylori B128]
gi|298736360|ref|YP_003728886.1| ribonuclease 3 [Helicobacter pylori B8]
gi|420435953|ref|ZP_14934952.1| ribonuclease III [Helicobacter pylori Hp H-27]
gi|420492689|ref|ZP_14991263.1| ribonuclease III [Helicobacter pylori Hp P-15]
gi|420497637|ref|ZP_14996197.1| ribonuclease III [Helicobacter pylori Hp P-25]
gi|420526711|ref|ZP_15025112.1| ribonuclease III [Helicobacter pylori Hp P-15b]
gi|420528023|ref|ZP_15026415.1| ribonuclease III [Helicobacter pylori Hp P-25c]
gi|420529893|ref|ZP_15028278.1| ribonuclease III [Helicobacter pylori Hp P-25d]
gi|216945835|gb|EEC24456.1| hypothetical protein HPB128_156g19 [Helicobacter pylori B128]
gi|298355550|emb|CBI66422.1| ribonuclease 3 [Helicobacter pylori B8]
gi|393051812|gb|EJB52763.1| ribonuclease III [Helicobacter pylori Hp H-27]
gi|393107128|gb|EJC07671.1| ribonuclease III [Helicobacter pylori Hp P-15]
gi|393113916|gb|EJC14434.1| ribonuclease III [Helicobacter pylori Hp P-25]
gi|393132016|gb|EJC32439.1| ribonuclease III [Helicobacter pylori Hp P-15b]
gi|393133918|gb|EJC34333.1| ribonuclease III [Helicobacter pylori Hp P-25c]
gi|393136222|gb|EJC36613.1| ribonuclease III [Helicobacter pylori Hp P-25d]
Length = 239
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYYALQKLKE 237
>gi|451337399|ref|ZP_21907944.1| Ribonuclease III [Amycolatopsis azurea DSM 43854]
gi|449419994|gb|EMD25505.1| Ribonuclease III [Amycolatopsis azurea DSM 43854]
Length = 248
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL +P Y + +G H F +TV VGG +KK+AE +A+
Sbjct: 170 WKTSLQELTASAGLGVPEYKVEDTGPDHRKEFSATVLVGGRELGYGSGTTKKEAEQKSAE 229
Query: 91 VAYMRL 96
A+ +L
Sbjct: 230 TAWRQL 235
>gi|350415252|ref|XP_003490582.1| PREDICTED: double-stranded RNA-specific editase Adar-like [Bombus
impatiens]
Length = 663
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 14/120 (11%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYM 94
L EL Y + Q+G +HAP F V++ G+ + G+G ++KK A+ +AA++A
Sbjct: 84 LNELKTGAVYKV----VDQTGPTHAPIFTIAVQIDGQTYEGKG-RTKKMAKHAAAELALR 138
Query: 95 RLKE----PNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGRLVFNPNSMPK 150
+ + P Q P I + D++ S+VT +H + L P S K
Sbjct: 139 NIIQFRNTPEVHQAINTCQPSIPLEPDFT-----SDVTERDNHLVNAFKTLTQEPKSTNK 193
>gi|410722568|ref|ZP_11361838.1| ribonuclease III [Methanobacterium sp. Maddingley MBC34]
gi|410596122|gb|EKQ50808.1| ribonuclease III [Methanobacterium sp. Maddingley MBC34]
Length = 217
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
YK+ L EL+ KE + + K+ GE H TF + GE F SKK+A+ +AAK
Sbjct: 152 YKSELHELSNKEGFCIVYDLLKEKGEPHRKTFTIAALIDGENFGTGVGGSKKEAQQNAAK 211
Query: 91 VA 92
A
Sbjct: 212 EA 213
>gi|291530279|emb|CBK95864.1| RNAse III [Eubacterium siraeum 70/3]
Length = 226
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 31 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK VLQE+ Q+ Y + +SG++H F + V + G++ KSKK+AE SAA
Sbjct: 155 YKTVLQEIIQQNPEERVTYEISDESGQAHNKQFTANVLLNGQIIGTGKGKSKKEAEQSAA 214
Query: 90 KVA 92
K A
Sbjct: 215 KEA 217
>gi|254439178|ref|ZP_05052672.1| ribonuclease III [Octadecabacter antarcticus 307]
gi|198254624|gb|EDY78938.1| ribonuclease III [Octadecabacter antarcticus 307]
Length = 229
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 21 FTNQEDDSVLYKNVLQELAQKEAYALPVY-NTKQSGESHAPTFVSTVEV---GGEVFSGQ 76
TN E D+ K LQE AQ + P Y T +SG HAP F T+EV G GQ
Sbjct: 148 ITNVEKDARDPKTALQEWAQGQGEPPPSYIETARSGPDHAPIF--TIEVRLQSGPTDIGQ 205
Query: 77 GAKSKKQAEMSAAKVAYMRLK 97
A SK+QAE +AAK R++
Sbjct: 206 -APSKRQAEQAAAKSLLERVQ 225
>gi|317121789|ref|YP_004101792.1| ribonuclease III [Thermaerobacter marianensis DSM 12885]
gi|315591769|gb|ADU51065.1| ribonuclease III [Thermaerobacter marianensis DSM 12885]
Length = 329
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 32 KNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
K LQEL+++ P Y SG H P + V VGG +SKK AE AA+
Sbjct: 233 KTALQELSRRLGLGEPSYRVIDASGPEHDPRYTVEVRVGGRPLGQAVGRSKKVAEREAAR 292
Query: 91 VAYMRLKE 98
+A L+E
Sbjct: 293 IALADLEE 300
>gi|167751472|ref|ZP_02423599.1| hypothetical protein EUBSIR_02468 [Eubacterium siraeum DSM 15702]
gi|167655280|gb|EDR99409.1| ribonuclease III [Eubacterium siraeum DSM 15702]
gi|291557094|emb|CBL34211.1| RNAse III [Eubacterium siraeum V10Sc8a]
Length = 226
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 31 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK VLQE+ Q+ Y + +SG++H F + V + G++ KSKK+AE SAA
Sbjct: 155 YKTVLQEIIQQNPEERVTYEISDESGQAHNKQFTANVLLNGQIIGTGKGKSKKEAEQSAA 214
Query: 90 KVA 92
K A
Sbjct: 215 KEA 217
>gi|351702783|gb|EHB05702.1| Double-stranded RNA-specific editase B2 [Heterocephalus glaber]
Length = 805
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 32 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 91
KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M AA++
Sbjct: 187 KNALVQLHELKP-GLQYRMVSQTGPVHAPVFAVAVEVNGFTFEGTGP-TKKKAKMHAAEL 244
Query: 92 AYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A + PN Q + D++S
Sbjct: 245 ALKSFVQFPNACQAHLAMGSGTSPCTDFTS 274
>gi|299821773|ref|ZP_07053661.1| ribonuclease III [Listeria grayi DSM 20601]
gi|299817438|gb|EFI84674.1| ribonuclease III [Listeria grayi DSM 20601]
Length = 230
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 8 LLRSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTV 66
++R ++R + T ++V +K LQE+ Q++ L Y+ ++SG +H+ F + V
Sbjct: 137 VIRFLERVIFPKIDTGAFLETVDHKTQLQEIVQRDRDVLIQYDILEESGPAHSKAFEAQV 196
Query: 67 EVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
V G++ ++KKQAE +AAK A +L
Sbjct: 197 VVNGQMLGRGEGRTKKQAEQNAAKEAINKL 226
>gi|118470776|ref|YP_886758.1| ribonuclease III [Mycobacterium smegmatis str. MC2 155]
gi|399986771|ref|YP_006567120.1| ribonuclease III [Mycobacterium smegmatis str. MC2 155]
gi|118172063|gb|ABK72959.1| ribonuclease III [Mycobacterium smegmatis str. MC2 155]
gi|399231332|gb|AFP38825.1| Ribonuclease III [Mycobacterium smegmatis str. MC2 155]
Length = 230
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSAA 89
+K+ LQEL P Y +G H F +TV +G E G G ++KK+AE+ AA
Sbjct: 162 WKSSLQELTAARGLGAPAYVVTSTGPDHDKEFSATVVIG-EAEYGHGVGRTKKEAELKAA 220
Query: 90 KVAYMRLKE 98
AY L E
Sbjct: 221 ASAYKTLDE 229
>gi|420490832|ref|ZP_14989414.1| ribonuclease III [Helicobacter pylori Hp P-13]
gi|420524677|ref|ZP_15023084.1| ribonuclease III [Helicobacter pylori Hp P-13b]
gi|393106292|gb|EJC06836.1| ribonuclease III [Helicobacter pylori Hp P-13]
gi|393130948|gb|EJC31372.1| ribonuclease III [Helicobacter pylori Hp P-13b]
Length = 239
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYYALQKLKE 237
>gi|420470518|ref|ZP_14969227.1| ribonuclease III [Helicobacter pylori Hp H-11]
gi|393085951|gb|EJB86630.1| ribonuclease III [Helicobacter pylori Hp H-11]
Length = 239
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYYALQKLKE 237
>gi|307776250|pdb|2L2N|A Chain A, Backbone 1h, 13c, And 15n Chemical Shift Assignments For
The First Dsrbd Of Protein Hyl1
Length = 103
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 27 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAE 85
+ ++K+ LQE AQK PVY + G SH F STV + G + S G ++K AE
Sbjct: 15 NCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAE 74
Query: 86 MSAAKVAYMRL 96
SAA+VA L
Sbjct: 75 QSAAEVALREL 85
>gi|425433524|ref|ZP_18814058.1| ribonuclease III [Helicobacter pylori GAM100Ai]
gi|410713866|gb|EKQ71358.1| ribonuclease III [Helicobacter pylori GAM100Ai]
Length = 240
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 156 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 208
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 209 QDKIYATAKGKSKKEAEQQCAYQALQKLKE 238
>gi|320536816|ref|ZP_08036812.1| ribonuclease III [Treponema phagedenis F0421]
gi|320146325|gb|EFW37945.1| ribonuclease III [Treponema phagedenis F0421]
Length = 243
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 31 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK+ LQEL+QK+ LP+Y K G H TF V++ + + KSKK+A + A
Sbjct: 172 YKSALQELSQKKFQILPLYTVVKAQGPDHDRTFWVEVQIHTKKYGPATGKSKKEAAQAVA 231
Query: 90 KVAY 93
++A+
Sbjct: 232 ELAW 235
>gi|289435148|ref|YP_003465020.1| ribonuclease III [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|422419421|ref|ZP_16496376.1| ribonuclease III [Listeria seeligeri FSL N1-067]
gi|422422509|ref|ZP_16499462.1| ribonuclease III [Listeria seeligeri FSL S4-171]
gi|289171392|emb|CBH27936.1| ribonuclease III [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|313632767|gb|EFR99733.1| ribonuclease III [Listeria seeligeri FSL N1-067]
gi|313637349|gb|EFS02832.1| ribonuclease III [Listeria seeligeri FSL S4-171]
Length = 230
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 27 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
++V YK LQE+ Q++ L Y+ ++G +H F + V V G+V ++KKQAE
Sbjct: 156 ETVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAE 215
Query: 86 MSAAKVAYMRL 96
SAA+ A +L
Sbjct: 216 QSAAQFAINQL 226
>gi|421714918|ref|ZP_16154236.1| ribonuclease III [Helicobacter pylori R036d]
gi|407215772|gb|EKE85610.1| ribonuclease III [Helicobacter pylori R036d]
Length = 239
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYYALQKLKE 237
>gi|420466968|ref|ZP_14965725.1| ribonuclease III [Helicobacter pylori Hp H-9]
gi|393085366|gb|EJB86054.1| ribonuclease III [Helicobacter pylori Hp H-9]
Length = 239
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYYALQKLKE 237
>gi|375094027|ref|ZP_09740292.1| ribonuclease III [Saccharomonospora marina XMU15]
gi|374654760|gb|EHR49593.1| ribonuclease III [Saccharomonospora marina XMU15]
Length = 243
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL +P Y + +G H F + V VGG +KK+AE AA+
Sbjct: 170 WKTSLQELTASAGLGVPEYKVEDTGPDHRKEFSAVVFVGGRDLGHGEGTTKKEAEQKAAE 229
Query: 91 VAYMRLKE 98
A+ L E
Sbjct: 230 FAWRELTE 237
>gi|239826585|ref|YP_002949209.1| ribonuclease III [Geobacillus sp. WCH70]
gi|259491901|sp|C5D8T6.1|RNC_GEOSW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|239806878|gb|ACS23943.1| ribonuclease III [Geobacillus sp. WCH70]
Length = 246
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
+K+ LQEL Q++ + Y+ ++ G +H FVS V + G+ KSKK+AE AA
Sbjct: 174 FKSQLQELVQRDGIGVLEYSILEEKGPAHNKEFVSRVSLNGQELGIGVGKSKKEAEQHAA 233
Query: 90 KVAYMRLK 97
++A +LK
Sbjct: 234 QMALQKLK 241
>gi|108563072|ref|YP_627388.1| ribonuclease III [Helicobacter pylori HPAG1]
gi|107836845|gb|ABF84714.1| ribonuclease III [Helicobacter pylori HPAG1]
Length = 240
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 156 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 208
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 209 QDKMYATAKGKSKKEAEQQCAYYALQKLKE 238
>gi|91205996|ref|YP_538351.1| ribonuclease III [Rickettsia bellii RML369-C]
gi|157826640|ref|YP_001495704.1| ribonuclease III [Rickettsia bellii OSU 85-389]
gi|122425284|sp|Q1RHA2.1|RNC_RICBR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|189043340|sp|A8GYE2.1|RNC_RICB8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|91069540|gb|ABE05262.1| Ribonuclease III [Rickettsia bellii RML369-C]
gi|157801944|gb|ABV78667.1| ribonuclease III [Rickettsia bellii OSU 85-389]
Length = 227
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 32 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
K LQE AQ + + +P+Y K+ G +H TF +V++ G +G+G S K+AE +AA+
Sbjct: 160 KTALQEWAQSKDHHIPIYRLIKREGVAHLSTFTVSVKINGYEQTGKG-HSIKEAEKNAAR 218
Query: 91 VAYMRLK 97
+LK
Sbjct: 219 ELLHKLK 225
>gi|226374647|gb|ACO52475.1| RNA transcript variant b adenosine deaminase [Doryteuthis
opalescens]
Length = 687
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
L KN L +L + + L Q+G HAPTF VEV GEVF G G +KK+A++ AA
Sbjct: 65 LPKNALMQLNEIKP-GLEFQLMGQTGPVHAPTFNMKVEVNGEVFEGAGP-TKKKAKLQAA 122
Query: 90 KVA 92
+ A
Sbjct: 123 EKA 125
>gi|374853052|dbj|BAL55970.1| ribonuclease III [uncultured planctomycete]
Length = 251
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 32 KNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
K++LQ LAQK+ P Y + G H+ F+ VG + F +SKK+AE AA
Sbjct: 175 KSLLQHLAQKQHGVTPKYEVVDEKGPEHSKCFLVAAVVGEQRFPPAWGRSKKEAEQKAAA 234
Query: 91 VAYMRLKE---PNPSQ 103
A RL P PSQ
Sbjct: 235 NALARLHHQPLPYPSQ 250
>gi|354464998|ref|XP_003494967.1| PREDICTED: double-stranded RNA-specific editase B2 [Cricetulus
griseus]
Length = 739
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 32 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 91
KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M AA++
Sbjct: 121 KNALVQLHELKP-GLQYRMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMRAAEM 178
Query: 92 AYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A + PN Q + + D++S
Sbjct: 179 ALKSFVQFPNAFQAHLAMGSSTSSCTDFTS 208
>gi|296127821|ref|YP_003635073.1| ribonuclease III [Brachyspira murdochii DSM 12563]
gi|296019637|gb|ADG72874.1| ribonuclease III [Brachyspira murdochii DSM 12563]
Length = 246
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK + QEL QK+ PVY + + E++ F S V V + FS KSKK+AE AA
Sbjct: 166 YKTIFQELIQKKHKTSPVYKSYEYHDENNHEMFKSEVYVNDKNFSSGIGKSKKEAETEAA 225
Query: 90 KVA 92
K A
Sbjct: 226 KKA 228
>gi|116873240|ref|YP_850021.1| ribonuclease III [Listeria welshimeri serovar 6b str. SLCC5334]
gi|123466444|sp|A0AJR0.1|RNC_LISW6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|116742118|emb|CAK21242.1| ribonuclease III [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 229
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 86
+V YK LQE+ Q++ L Y+ ++G +H F + V V G+V ++KKQAE
Sbjct: 157 TVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQ 216
Query: 87 SAAKVAYMRL 96
SAA+ A +L
Sbjct: 217 SAAQFAINQL 226
>gi|344238997|gb|EGV95100.1| Double-stranded RNA-specific editase B2 [Cricetulus griseus]
Length = 708
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 32 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 91
KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M AA++
Sbjct: 90 KNALVQLHELKP-GLQYRMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMRAAEM 147
Query: 92 AYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A + PN Q + + D++S
Sbjct: 148 ALKSFVQFPNAFQAHLAMGSSTSSCTDFTS 177
>gi|420494167|ref|ZP_14992736.1| ribonuclease III [Helicobacter pylori Hp P-16]
gi|393110968|gb|EJC11492.1| ribonuclease III [Helicobacter pylori Hp P-16]
Length = 232
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 148 RAYKRLDLEYLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 200
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 201 QDKMYATAKGKSKKEAEQQCAYYALQKLKE 230
>gi|405953593|gb|EKC21226.1| Double-stranded RNA-specific editase 1 [Crassostrea gigas]
Length = 1518
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 49 YNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
YN Q+G HAPTFV +VE+ G+ F+G G SKK A ++ A+ A
Sbjct: 1465 YNVMSQTGPVHAPTFVISVEIEGQTFTGTGT-SKKSARLATAQNA 1508
>gi|420416986|ref|ZP_14916092.1| ribonuclease III [Helicobacter pylori NQ4044]
gi|393035258|gb|EJB36304.1| ribonuclease III [Helicobacter pylori NQ4044]
Length = 239
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYYALQKLKE 237
>gi|390956281|ref|YP_006420038.1| ribonuclease III [Terriglobus roseus DSM 18391]
gi|390411199|gb|AFL86703.1| ribonuclease III [Terriglobus roseus DSM 18391]
Length = 280
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
+K+ LQEL Q A P+Y T ++ G H F V +G V + SKK A+ +AA
Sbjct: 193 WKSALQELLQARAEGQPLYRTVEEIGNDHNKRFRVEVLLGDRVLADGEGTSKKSAQQAAA 252
Query: 90 KVAY 93
+VAY
Sbjct: 253 RVAY 256
>gi|224542836|ref|ZP_03683375.1| hypothetical protein CATMIT_02028 [Catenibacterium mitsuokai DSM
15897]
gi|224524248|gb|EEF93353.1| ribonuclease III [Catenibacterium mitsuokai DSM 15897]
Length = 230
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 22 TNQEDDSVLYKNVLQELAQKEAYALPVYNTKQS-GESHAPTFVSTVEVGGEVFSGQGAKS 80
N+ DD YK LQEL Q + Y+ K S G ++AP FV V + + S
Sbjct: 150 VNEFDDITDYKTKLQELVQSDDRKTVSYHVKSSTGPANAPEFVIEVILDDMILGTGKGTS 209
Query: 81 KKQAEMSAAKVAYMRL 96
KK+AE AAK A M++
Sbjct: 210 KKRAEQHAAKDALMKM 225
>gi|37590574|gb|AAH59822.1| Adarb2 protein [Mus musculus]
Length = 701
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 87
SV KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 123 SVTPKNALVQLHELKP-GLQYRMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMR 180
Query: 88 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
AA++A + PN Q + D++S
Sbjct: 181 AAEMALKSFVQFPNAFQAHLAMGSSTSPCTDFTS 214
>gi|212639596|ref|YP_002316116.1| ribonuclease III [Anoxybacillus flavithermus WK1]
gi|226735364|sp|B7GGE9.1|RNC_ANOFW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|212561076|gb|ACJ34131.1| DsRNA-specific ribonuclease [Anoxybacillus flavithermus WK1]
Length = 238
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQS-GESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK+ LQE Q++ + Y Q G +H FVS V + GE +SKK+AE AA
Sbjct: 166 YKSQLQEFVQRDGSGVLEYKILQERGPAHNKEFVSRVSLNGEELGVGVGRSKKEAEQRAA 225
Query: 90 KVAYMRLKE 98
++A +LK+
Sbjct: 226 QMALAKLKQ 234
>gi|26337823|dbj|BAC32597.1| unnamed protein product [Mus musculus]
Length = 701
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 87
SV KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 123 SVTPKNALVQLHELKP-GLQYRMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMR 180
Query: 88 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
AA++A + PN Q + D++S
Sbjct: 181 AAEMALKSFVQFPNAFQAHLAMGSSTSPCTDFTS 214
>gi|433446059|ref|ZP_20410190.1| ribonuclease III [Anoxybacillus flavithermus TNO-09.006]
gi|432000804|gb|ELK21696.1| ribonuclease III [Anoxybacillus flavithermus TNO-09.006]
Length = 231
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQS-GESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK+ LQE Q++ + Y Q G +H FVS V + GE +SKK+AE AA
Sbjct: 159 YKSQLQEFVQRDGSGVLEYKILQERGPAHNKEFVSRVSLNGEELGVGVGRSKKEAEQRAA 218
Query: 90 KVAYMRLKE 98
++A +LK+
Sbjct: 219 QMALAKLKQ 227
>gi|208434584|ref|YP_002266250.1| ribonuclease III [Helicobacter pylori G27]
gi|226741372|sp|B5Z735.1|RNC_HELPG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|208432513|gb|ACI27384.1| ribonuclease III [Helicobacter pylori G27]
Length = 239
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYYALQKLKE 237
>gi|395645479|ref|ZP_10433339.1| ribonuclease III [Methanofollis liminatans DSM 4140]
gi|395442219|gb|EJG06976.1| ribonuclease III [Methanofollis liminatans DSM 4140]
Length = 235
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 35 LQELAQKEAYALPVY-NTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAY 93
LQE Q+E LP Y + G H PTFVS V V G + SK A+ AA+VA
Sbjct: 169 LQERLQQERLGLPEYLIVSRDGPDHDPTFVSAVTVAGHFSAFGSGGSKAGAKKEAARVAL 228
Query: 94 MRLKEPN 100
L+ P+
Sbjct: 229 EVLETPS 235
>gi|386752652|ref|YP_006225871.1| ribonuclease III [Helicobacter pylori Shi169]
gi|384558910|gb|AFH99377.1| ribonuclease III [Helicobacter pylori Shi169]
Length = 239
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP 99
++++ K+KK+AE A A +LKE
Sbjct: 208 QDKIYATAKGKNKKEAEQQCAYQALQKLKEA 238
>gi|315303706|ref|ZP_07874220.1| ribonuclease III [Listeria ivanovii FSL F6-596]
gi|313627919|gb|EFR96538.1| ribonuclease III [Listeria ivanovii FSL F6-596]
Length = 229
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 27 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
++V YK LQE+ Q++ L Y+ ++G +H F + V V G+V ++KKQAE
Sbjct: 156 ETVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAE 215
Query: 86 MSAAKVAYMRL 96
SAA+ A +L
Sbjct: 216 QSAAQFAINQL 226
>gi|47097388|ref|ZP_00234939.1| ribonuclease III [Listeria monocytogenes str. 1/2a F6854]
gi|217964043|ref|YP_002349721.1| ribonuclease III [Listeria monocytogenes HCC23]
gi|254829200|ref|ZP_05233887.1| ribonuclease III [Listeria monocytogenes FSL N3-165]
gi|254912363|ref|ZP_05262375.1| ribonuclease III [Listeria monocytogenes J2818]
gi|254936690|ref|ZP_05268387.1| ribonuclease III [Listeria monocytogenes F6900]
gi|290893065|ref|ZP_06556054.1| ribonuclease III [Listeria monocytogenes FSL J2-071]
gi|386008577|ref|YP_005926855.1| ribonuclease III [Listeria monocytogenes L99]
gi|386027184|ref|YP_005947960.1| putative ribonuclease III [Listeria monocytogenes M7]
gi|386047457|ref|YP_005965789.1| ribonuclease III [Listeria monocytogenes J0161]
gi|404408249|ref|YP_006690964.1| ribonuclease III [Listeria monocytogenes SLCC2376]
gi|404413884|ref|YP_006699471.1| ribonuclease III [Listeria monocytogenes SLCC7179]
gi|422410046|ref|ZP_16487007.1| ribonuclease III [Listeria monocytogenes FSL F2-208]
gi|422809886|ref|ZP_16858297.1| Ribonuclease III [Listeria monocytogenes FSL J1-208]
gi|254807893|sp|B8DDU8.1|RNC_LISMH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|47014236|gb|EAL05218.1| ribonuclease III [Listeria monocytogenes str. 1/2a F6854]
gi|217333313|gb|ACK39107.1| ribonuclease III [Listeria monocytogenes HCC23]
gi|258601611|gb|EEW14936.1| ribonuclease III [Listeria monocytogenes FSL N3-165]
gi|258609286|gb|EEW21894.1| ribonuclease III [Listeria monocytogenes F6900]
gi|290557425|gb|EFD90950.1| ribonuclease III [Listeria monocytogenes FSL J2-071]
gi|293590344|gb|EFF98678.1| ribonuclease III [Listeria monocytogenes J2818]
gi|307571387|emb|CAR84566.1| ribonuclease III [Listeria monocytogenes L99]
gi|313608181|gb|EFR84216.1| ribonuclease III [Listeria monocytogenes FSL F2-208]
gi|336023765|gb|AEH92902.1| putative ribonuclease III [Listeria monocytogenes M7]
gi|345534448|gb|AEO03889.1| ribonuclease III [Listeria monocytogenes J0161]
gi|378751550|gb|EHY62138.1| Ribonuclease III [Listeria monocytogenes FSL J1-208]
gi|404239583|emb|CBY60984.1| ribonuclease III [Listeria monocytogenes SLCC7179]
gi|404242398|emb|CBY63798.1| ribonuclease III [Listeria monocytogenes SLCC2376]
Length = 229
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 86
+V YK LQE+ Q++ L Y+ ++G +H F + V V G+V ++KKQAE
Sbjct: 157 TVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQ 216
Query: 87 SAAKVAYMRL 96
SAA+ A +L
Sbjct: 217 SAAQFAINQL 226
>gi|347549202|ref|YP_004855530.1| putative ribonuclease III [Listeria ivanovii subsp. ivanovii PAM
55]
gi|346982273|emb|CBW86267.1| Putative ribonuclease III [Listeria ivanovii subsp. ivanovii PAM
55]
Length = 230
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 27 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
++V YK LQE+ Q++ L Y+ ++G +H F + V V G+V ++KKQAE
Sbjct: 156 ETVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAE 215
Query: 86 MSAAKVAYMRL 96
SAA+ A +L
Sbjct: 216 QSAAQFAINQL 226
>gi|449893615|ref|ZP_21788846.1| ribonuclease III [Streptococcus mutans SF12]
gi|449994548|ref|ZP_21822594.1| ribonuclease III [Streptococcus mutans A9]
gi|449185277|gb|EMB87170.1| ribonuclease III [Streptococcus mutans A9]
gi|449255782|gb|EMC53624.1| ribonuclease III [Streptococcus mutans SF12]
Length = 231
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK LQEL Q + L Y K+SG +HA F V + E S KSKK AE AA
Sbjct: 161 YKTALQELLQVDGDVLIDYEVLKESGPAHAKCFEVAVSMNHEKLSSGTGKSKKLAEQEAA 220
Query: 90 KVAYMRLK 97
K A +L+
Sbjct: 221 KNALKKLQ 228
>gi|421712978|ref|ZP_16152309.1| ribonuclease III [Helicobacter pylori R32b]
gi|407216344|gb|EKE86181.1| ribonuclease III [Helicobacter pylori R32b]
Length = 239
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 100
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYYALQKLKEAK 239
>gi|420504304|ref|ZP_15002831.1| ribonuclease III [Helicobacter pylori Hp P-62]
gi|393154716|gb|EJC54997.1| ribonuclease III [Helicobacter pylori Hp P-62]
Length = 239
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 100
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYYALQKLKEAK 239
>gi|359687900|ref|ZP_09257901.1| ribonuclease III [Leptospira licerasiae serovar Varillal str.
MMD0835]
gi|418751524|ref|ZP_13307810.1| ribonuclease III [Leptospira licerasiae str. MMD4847]
gi|418758724|ref|ZP_13314906.1| ribonuclease III [Leptospira licerasiae serovar Varillal str. VAR
010]
gi|384114626|gb|EIE00889.1| ribonuclease III [Leptospira licerasiae serovar Varillal str. VAR
010]
gi|404274127|gb|EJZ41447.1| ribonuclease III [Leptospira licerasiae str. MMD4847]
Length = 268
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSA 88
YK+VLQE+ QK+ LP Y K+ G H TF +V + + FS +G K+KK AE A
Sbjct: 198 YKSVLQEICQKKFKLLPSYRLLKEVGPDHEKTFYVSVSIR-DKFSAEGKGKNKKFAEQDA 256
Query: 89 AKVAYMRLK 97
AK LK
Sbjct: 257 AKQLLKSLK 265
>gi|340725561|ref|XP_003401137.1| PREDICTED: double-stranded RNA-specific editase Adar-like [Bombus
terrestris]
Length = 663
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYM 94
L EL Y + Q+G +HAP F V++ G+ + G+G ++KK A+ +AA++A
Sbjct: 84 LNELKTGAVYKV----VDQTGPTHAPIFTIAVQIDGQTYEGKG-RTKKMAKHAAAELALR 138
Query: 95 RLKE----PNPSQGPALVSPDIQAQADYSS 120
+ + P Q P I + D++S
Sbjct: 139 NIIQFRNTPEVHQAINTCQPSIPLEPDFTS 168
>gi|452911420|ref|ZP_21960088.1| Ribonuclease III [Kocuria palustris PEL]
gi|452833348|gb|EME36161.1| Ribonuclease III [Kocuria palustris PEL]
Length = 241
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 17 LSMMFTNQEDDSVL-----YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGE 71
L M+ EDD V+ +K +QELA Y + +G H +F ++ +GG
Sbjct: 140 LRMIVPLLEDDFVIREGRDWKTEIQELAAMRGMGAVTYEVEGTGPDHNRSFTASCLLGGT 199
Query: 72 VFSGQGAKSKKQAEMSAAKVAY 93
V SKK+AE AA+ AY
Sbjct: 200 VHGTGPGTSKKEAERRAAESAY 221
>gi|16800985|ref|NP_471253.1| ribonuclease III [Listeria innocua Clip11262]
gi|422413349|ref|ZP_16490308.1| ribonuclease III [Listeria innocua FSL S4-378]
gi|423098714|ref|ZP_17086422.1| ribonuclease III [Listeria innocua ATCC 33091]
gi|22654065|sp|Q92AK3.1|RNC_LISIN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|16414420|emb|CAC97149.1| rncS [Listeria innocua Clip11262]
gi|313618316|gb|EFR90363.1| ribonuclease III [Listeria innocua FSL S4-378]
gi|370794541|gb|EHN62304.1| ribonuclease III [Listeria innocua ATCC 33091]
Length = 229
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 86
+V YK LQE+ Q++ L Y+ ++G +H F + V V G+V ++KKQAE
Sbjct: 157 TVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQ 216
Query: 87 SAAKVAYMRL 96
SAA+ A +L
Sbjct: 217 SAAQFAINQL 226
>gi|380024649|ref|XP_003696105.1| PREDICTED: double-stranded RNA-specific editase Adar-like [Apis
florea]
Length = 663
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYM 94
L EL Y + Q+G +HAP F V++ G+ + G+G ++KK A+ +AA++A
Sbjct: 84 LNELKSGAVYKV----VDQTGPTHAPIFTIAVQIDGQTYEGKG-RTKKMAKHAAAELALR 138
Query: 95 RLKE----PNPSQGPALVSPDIQAQADYSS 120
+ + P Q P I + D++S
Sbjct: 139 NIVQFRNTPEVHQAINTCQPSIPLEPDFTS 168
>gi|338210252|ref|YP_004654299.1| ribonuclease 3 [Runella slithyformis DSM 19594]
gi|336304065|gb|AEI47167.1| Ribonuclease 3 [Runella slithyformis DSM 19594]
Length = 248
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 20 MFTNQEDDSVL-----YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFS 74
+ T+ + D+++ +K+ L E AQ+E + ++ G H F+S V + GEVF+
Sbjct: 164 LLTHYDLDALINNNANFKSRLIEWAQREGKEVRFMIVEEKGSRHFREFISQVILSGEVFA 223
Query: 75 GQGAKSKKQAEMSAAKVA 92
SKK+AE SAA+ A
Sbjct: 224 QGSGYSKKKAEQSAAEKA 241
>gi|284802251|ref|YP_003414116.1| hypothetical protein LM5578_2007 [Listeria monocytogenes 08-5578]
gi|284995393|ref|YP_003417161.1| hypothetical protein LM5923_1958 [Listeria monocytogenes 08-5923]
gi|386044113|ref|YP_005962918.1| ribonuclease III [Listeria monocytogenes 10403S]
gi|386054060|ref|YP_005971618.1| ribonuclease III [Listeria monocytogenes Finland 1998]
gi|404411106|ref|YP_006696694.1| ribonuclease III [Listeria monocytogenes SLCC5850]
gi|284057813|gb|ADB68754.1| hypothetical protein LM5578_2007 [Listeria monocytogenes 08-5578]
gi|284060860|gb|ADB71799.1| hypothetical protein LM5923_1958 [Listeria monocytogenes 08-5923]
gi|345537347|gb|AEO06787.1| ribonuclease III [Listeria monocytogenes 10403S]
gi|346646711|gb|AEO39336.1| ribonuclease III [Listeria monocytogenes Finland 1998]
gi|404230932|emb|CBY52336.1| ribonuclease III [Listeria monocytogenes SLCC5850]
gi|441471562|emb|CCQ21317.1| Ribonuclease 3 [Listeria monocytogenes]
gi|441474693|emb|CCQ24447.1| Ribonuclease 3 [Listeria monocytogenes N53-1]
Length = 229
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 86
+V YK LQE+ Q++ L Y+ ++G +H F + V V G+V ++KKQAE
Sbjct: 157 TVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQ 216
Query: 87 SAAKVAYMRL 96
SAA+ A +L
Sbjct: 217 SAAQFAINQL 226
>gi|46908036|ref|YP_014425.1| ribonuclease III [Listeria monocytogenes serotype 4b str. F2365]
gi|47093844|ref|ZP_00231588.1| ribonuclease III [Listeria monocytogenes str. 4b H7858]
gi|226224408|ref|YP_002758515.1| ribonuclease III [Listeria monocytogenes serotype 4b str. CLIP
80459]
gi|254826153|ref|ZP_05231154.1| ribonuclease III [Listeria monocytogenes FSL J1-194]
gi|254852713|ref|ZP_05242061.1| ribonuclease III [Listeria monocytogenes FSL R2-503]
gi|254933277|ref|ZP_05266636.1| ribonuclease III [Listeria monocytogenes HPB2262]
gi|300763882|ref|ZP_07073879.1| ribonuclease III [Listeria monocytogenes FSL N1-017]
gi|386732545|ref|YP_006206041.1| ribonuclease III [Listeria monocytogenes 07PF0776]
gi|404281417|ref|YP_006682315.1| ribonuclease III [Listeria monocytogenes SLCC2755]
gi|404287234|ref|YP_006693820.1| ribonuclease III [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|405750156|ref|YP_006673622.1| ribonuclease III [Listeria monocytogenes ATCC 19117]
gi|405753031|ref|YP_006676496.1| ribonuclease III [Listeria monocytogenes SLCC2378]
gi|405755965|ref|YP_006679429.1| ribonuclease III [Listeria monocytogenes SLCC2540]
gi|406704588|ref|YP_006754942.1| ribonuclease III [Listeria monocytogenes L312]
gi|417317908|ref|ZP_12104509.1| ribonuclease III [Listeria monocytogenes J1-220]
gi|424714681|ref|YP_007015396.1| Ribonuclease 3 [Listeria monocytogenes serotype 4b str. LL195]
gi|424823566|ref|ZP_18248579.1| Ribonuclease 3 [Listeria monocytogenes str. Scott A]
gi|73917580|sp|Q71YL2.1|RNC_LISMF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|259491903|sp|C1KWA4.1|RNC_LISMC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|46881306|gb|AAT04602.1| ribonuclease III [Listeria monocytogenes serotype 4b str. F2365]
gi|47017785|gb|EAL08574.1| ribonuclease III [Listeria monocytogenes str. 4b H7858]
gi|225876870|emb|CAS05579.1| Putative ribonuclease III [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|258606034|gb|EEW18642.1| ribonuclease III [Listeria monocytogenes FSL R2-503]
gi|293584837|gb|EFF96869.1| ribonuclease III [Listeria monocytogenes HPB2262]
gi|293595393|gb|EFG03154.1| ribonuclease III [Listeria monocytogenes FSL J1-194]
gi|300515618|gb|EFK42668.1| ribonuclease III [Listeria monocytogenes FSL N1-017]
gi|328473534|gb|EGF44371.1| ribonuclease III [Listeria monocytogenes J1-220]
gi|332312246|gb|EGJ25341.1| Ribonuclease 3 [Listeria monocytogenes str. Scott A]
gi|384391303|gb|AFH80373.1| ribonuclease III [Listeria monocytogenes 07PF0776]
gi|404219356|emb|CBY70720.1| ribonuclease III [Listeria monocytogenes ATCC 19117]
gi|404222231|emb|CBY73594.1| ribonuclease III [Listeria monocytogenes SLCC2378]
gi|404225165|emb|CBY76527.1| ribonuclease III [Listeria monocytogenes SLCC2540]
gi|404228052|emb|CBY49457.1| ribonuclease III [Listeria monocytogenes SLCC2755]
gi|404246163|emb|CBY04388.1| ribonuclease III [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|406361618|emb|CBY67891.1| ribonuclease III [Listeria monocytogenes L312]
gi|424013865|emb|CCO64405.1| Ribonuclease 3 [Listeria monocytogenes serotype 4b str. LL195]
Length = 229
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 86
+V YK LQE+ Q++ L Y+ ++G +H F + V V G+V ++KKQAE
Sbjct: 157 TVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQ 216
Query: 87 SAAKVAYMRL 96
SAA+ A +L
Sbjct: 217 SAAQFAINQL 226
>gi|449672502|ref|XP_002169974.2| PREDICTED: uncharacterized protein LOC100206939 [Hydra
magnipapillata]
Length = 437
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 32 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 91
KN LQE Q+ ALP Y T + + T VSTV V G + G+ KK+AE+SAA +
Sbjct: 372 KNRLQEYCQRLKKALPQYKTALNSDK---TRVSTVIVEGVHYQGEAKVFKKEAELSAASI 428
Query: 92 A 92
A
Sbjct: 429 A 429
Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSAA 89
+K+ L ELAQK P Y T S A ++STV G F G KK AE +AA
Sbjct: 245 FKSKLNELAQKRHLGTPTYQTIYS----AGGYLSTVVFNGREFKGMSPCMKKKDAEQNAA 300
Query: 90 KVAYMRLKE-----PNPSQGPALVSP 110
VAY L P P + PA+ P
Sbjct: 301 FVAYNVLSNDLSSLP-PVKAPAVKKP 325
>gi|386856052|ref|YP_006260229.1| Double-stranded RNA binding protein [Deinococcus gobiensis I-0]
gi|379999581|gb|AFD24771.1| Double-stranded RNA binding protein [Deinococcus gobiensis I-0]
Length = 149
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 47 PVYNTKQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSAAKVAYMRL 96
PV+ + G H TF + V VGGEV GQG +SKK AE +AA+VA L
Sbjct: 19 PVFEAEAEGPPHDRTFRAQVSVGGEVL-GQGEGRSKKDAERAAAEVALRVL 68
>gi|417931381|ref|ZP_12574749.1| ribonuclease III [Propionibacterium acnes SK182B-JCVI]
gi|340776120|gb|EGR98170.1| ribonuclease III [Propionibacterium acnes SK182B-JCVI]
Length = 246
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K VLQE + + P Y SG H + + V G++ + +KK+AE AA+
Sbjct: 173 WKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDGKLHAAYTGHNKKEAEQGAAR 232
Query: 91 VAYMRLK 97
+A LK
Sbjct: 233 LAVCALK 239
>gi|405374858|ref|ZP_11029152.1| Ribonuclease III [Chondromyces apiculatus DSM 436]
gi|397086526|gb|EJJ17629.1| Ribonuclease III [Myxococcus sp. (contaminant ex DSM 436)]
Length = 260
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK +LQE+A + P Y +SG H+ F + +G F+ +SKK+AE SAA
Sbjct: 173 YKTLLQEMAHERLKLQPRYRVVSESGPEHSKVFEVELMLGDTAFARASGRSKKEAEQSAA 232
Query: 90 KVAYMRLKE 98
+ +L+E
Sbjct: 233 QATLDKLQE 241
>gi|195045715|ref|XP_001992024.1| GH24441 [Drosophila grimshawi]
gi|193892865|gb|EDV91731.1| GH24441 [Drosophila grimshawi]
Length = 633
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 34 VLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
+L EL Q Y L Q+G HAP F +VEV G+ + GQG +SKK A + AA A
Sbjct: 62 MLNELRQGLIYKL----ESQTGPVHAPLFTISVEVDGQKYMGQG-RSKKVARIEAAATA 115
>gi|320528410|ref|ZP_08029572.1| ribonuclease III [Solobacterium moorei F0204]
gi|320131324|gb|EFW23892.1| ribonuclease III [Solobacterium moorei F0204]
Length = 226
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 25 EDDSVL--YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSK 81
ED V+ YK LQE Q ++ Y ++G S+AP FV V V G V +SK
Sbjct: 150 EDVGVIHDYKTKLQEYVQSDSRQTVKYELVSETGPSNAPEFVMNVLVDGLVLGTGSGQSK 209
Query: 82 KQAEMSAAKVAYMRL 96
KQAE +AA+ A+ ++
Sbjct: 210 KQAEQNAARNAFEKM 224
>gi|312111708|ref|YP_003990024.1| ribonuclease III [Geobacillus sp. Y4.1MC1]
gi|336236083|ref|YP_004588699.1| ribonuclease III [Geobacillus thermoglucosidasius C56-YS93]
gi|423720626|ref|ZP_17694808.1| ribonuclease III [Geobacillus thermoglucosidans TNO-09.020]
gi|311216809|gb|ADP75413.1| ribonuclease III [Geobacillus sp. Y4.1MC1]
gi|335362938|gb|AEH48618.1| ribonuclease III [Geobacillus thermoglucosidasius C56-YS93]
gi|383365979|gb|EID43270.1| ribonuclease III [Geobacillus thermoglucosidans TNO-09.020]
Length = 246
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
+K+ LQEL Q++ + Y+ ++ G +H FVS V + G+ KSKK+AE AA
Sbjct: 174 FKSQLQELVQRDGIGVLEYSILEEKGPAHNKEFVSRVSLNGQELGIGVGKSKKEAEQHAA 233
Query: 90 KVAYMRLK 97
++A +LK
Sbjct: 234 QMALQKLK 241
>gi|419417861|ref|ZP_13958250.1| ribonuclease III [Helicobacter pylori NCTC 11637 = CCUG 17874]
gi|384375277|gb|EIE30581.1| ribonuclease III [Helicobacter pylori NCTC 11637 = CCUG 17874]
Length = 239
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 100
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYYALQKLKEAK 239
>gi|148700329|gb|EDL32276.1| adenosine deaminase, RNA-specific, B2, isoform CRA_a [Mus musculus]
Length = 742
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 87
SV KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 123 SVTPKNALVQLHELKP-GLQYRMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMR 180
Query: 88 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
AA++A + PN Q + D++S
Sbjct: 181 AAEMALKSFVQFPNAFQAHLAMGSSTSPCTDFTS 214
>gi|408673367|ref|YP_006873115.1| Ribonuclease 3 [Emticicia oligotrophica DSM 17448]
gi|387854991|gb|AFK03088.1| Ribonuclease 3 [Emticicia oligotrophica DSM 17448]
Length = 248
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 9 LRSMQRSQLSMMFTNQED-DSVL-----YKNVLQELAQKEAYALPVYNTKQSGESHAPTF 62
R ++ L + N D D+V+ YK++L +Q+E + +++G+ H F
Sbjct: 151 FRFTKKFILKKLLANYFDLDTVIQTNTNYKSILLSWSQQEGKRITFEIIQENGKHHHKEF 210
Query: 63 VSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
V+ V V GE S G +KK+AE AA+ A
Sbjct: 211 VAQVSVDGEAVSKGGGWNKKKAEQEAARRA 240
>gi|338721506|ref|XP_001917073.2| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific
editase B2-like [Equus caballus]
Length = 734
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 87
SV KN L +L + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 123 SVTPKNALVQLHELRP-GLQYRMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMR 180
Query: 88 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
AA++A + PN Q + D++S
Sbjct: 181 AAELALRSFVQFPNACQAHLAMGGGAGPCTDFTS 214
>gi|345324200|ref|XP_001511395.2| PREDICTED: double-stranded RNA-specific editase B2-like
[Ornithorhynchus anatinus]
Length = 893
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 87
SV KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 269 SVAPKNALVQLHELKP-GLQYRMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMR 326
Query: 88 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
AA++A + PN Q + D++S
Sbjct: 327 AAELALRSFVQFPNACQAHFAMGNGASPPTDFTS 360
>gi|302389624|ref|YP_003825445.1| RNAse III [Thermosediminibacter oceani DSM 16646]
gi|302200252|gb|ADL07822.1| RNAse III [Thermosediminibacter oceani DSM 16646]
Length = 241
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 12 MQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGG 70
M+R++ +F + YK LQE+ Q+ + YN K+ G H TF V
Sbjct: 156 MERAEKGKLFPD-------YKTALQEMLQRISPDRITYNVIKEEGPDHNKTFFVEVVWKN 208
Query: 71 EVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 100
++ KSKK+AE +AAK A LK+ N
Sbjct: 209 KILGSGCGKSKKEAEQNAAKAAIRFLKDRN 238
>gi|148277633|ref|NP_001091684.1| adenosine deaminase acting on RNA [Apis mellifera]
gi|146260809|gb|ABQ14707.1| adenosine deaminase [Apis mellifera]
Length = 620
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYM 94
L EL Y + Q+G +HAP F V++ G+ + G+G ++KK A+ +AA++A
Sbjct: 41 LNELKSGAVYKV----VDQTGPTHAPIFTIAVQIDGQTYEGKG-RTKKMAKHAAAELALR 95
Query: 95 RLKE----PNPSQGPALVSPDIQAQADYSS 120
+ + P Q P I + D++S
Sbjct: 96 NIVQFRNTPEVHQAINTCQPSIPLEPDFTS 125
>gi|8699065|gb|AAF78580.1| RNA adenosine deaminase RED2 [Mus musculus]
Length = 731
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 87
SV KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 113 SVTPKNALVQLHELKP-GLQYRMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMR 170
Query: 88 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
AA++A + PN Q + D++S
Sbjct: 171 AAEMALKSFVQFPNAFQAHLAMGSSTSPCTDFTS 204
>gi|8571466|gb|AAF76894.1|AF270495_1 RNA dependent adenosine deaminase 3 [Mus musculus]
Length = 745
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 87
SV KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 123 SVTPKNALVQLHELKP-GLQYRMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMR 180
Query: 88 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
AA++A + PN Q + D++S
Sbjct: 181 AAEMALKSFVQFPNAFQAHLAMGSSTSPCTDFTS 214
>gi|31542106|ref|NP_443209.2| double-stranded RNA-specific editase B2 [Mus musculus]
gi|33112435|sp|Q9JI20.2|RED2_MOUSE RecName: Full=Double-stranded RNA-specific editase B2; AltName:
Full=RNA-dependent adenosine deaminase 3; AltName:
Full=RNA-editing deaminase 2; AltName: Full=RNA-editing
enzyme 2; AltName: Full=dsRNA adenosine deaminase B2
gi|26329549|dbj|BAC28513.1| unnamed protein product [Mus musculus]
gi|30851427|gb|AAH52426.1| Adenosine deaminase, RNA-specific, B2 [Mus musculus]
gi|74224054|dbj|BAE23882.1| unnamed protein product [Mus musculus]
gi|74226553|dbj|BAE23939.1| unnamed protein product [Mus musculus]
gi|148700330|gb|EDL32277.1| adenosine deaminase, RNA-specific, B2, isoform CRA_b [Mus musculus]
Length = 745
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 87
SV KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 123 SVTPKNALVQLHELKP-GLQYRMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMR 180
Query: 88 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
AA++A + PN Q + D++S
Sbjct: 181 AAEMALKSFVQFPNAFQAHLAMGSSTSPCTDFTS 214
>gi|348541265|ref|XP_003458107.1| PREDICTED: double-stranded RNA-specific editase B2-like
[Oreochromis niloticus]
Length = 1080
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 51 TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMR-LKEPNPSQGPALVS 109
T ++G HAP F VEV G F G+G +KKQA+M AA+ A ++ PN SQ A +
Sbjct: 463 TSKTGPLHAPVFSVAVEVNGFHFEGRGP-TKKQAKMRAAEQALQSFIQFPNTSQAHASMG 521
Query: 110 PDIQAQADYSS 120
D+++
Sbjct: 522 NFTSTPVDFTA 532
>gi|315282805|ref|ZP_07871128.1| ribonuclease III [Listeria marthii FSL S4-120]
gi|313613534|gb|EFR87355.1| ribonuclease III [Listeria marthii FSL S4-120]
Length = 229
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 86
+V YK LQE+ Q++ L Y+ ++G +H F + V V G+V ++KKQAE
Sbjct: 157 TVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQ 216
Query: 87 SAAKVAYMRL 96
SAA+ A +L
Sbjct: 217 SAAQFAINQL 226
>gi|385799690|ref|YP_005836094.1| RNAse III [Halanaerobium praevalens DSM 2228]
gi|309389054|gb|ADO76934.1| RNAse III [Halanaerobium praevalens DSM 2228]
Length = 237
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
YK +LQE+ Q P Y + G H TF+ V++ E SGQG+ SKK+AE A
Sbjct: 167 YKTMLQEVIQDMGNFRPEYEVIDEEGPDHNKTFIVAVKMNEESLGSGQGS-SKKEAEQEA 225
Query: 89 AKVAYMRL 96
AKVA +L
Sbjct: 226 AKVALDKL 233
>gi|74148073|dbj|BAE22359.1| unnamed protein product [Mus musculus]
Length = 745
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 87
SV KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 123 SVTPKNALVQLHELKP-GLQYRMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMR 180
Query: 88 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
AA++A + PN Q + D++S
Sbjct: 181 AAEMALKSFVQFPNAFQAHLAMGSSTSPCTDFTS 214
>gi|374849967|dbj|BAL52968.1| ribonuclease III [uncultured candidate division OP1 bacterium]
gi|374856382|dbj|BAL59236.1| ribonuclease III [uncultured candidate division OP1 bacterium]
Length = 230
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQS-GESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK +LQE AQ++ + PVY S G+ H F VEV G G+G +SKK AE AA
Sbjct: 160 YKTLLQEWAQQQ-HQKPVYTLVASEGQDHCKEFTVRVEVNGFSALGKG-RSKKAAEQEAA 217
Query: 90 KVAYMRL 96
+ Y +L
Sbjct: 218 RQLYTQL 224
>gi|356511271|ref|XP_003524350.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Glycine
max]
Length = 1180
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
YKN LQ + + P Y TK+ + F STV G F GQ SKK AE SAA
Sbjct: 1083 YKNHLQAFLNRAGHDSPTYKTKELKNNQ---FRSTVIFNGLNFVGQPCSSKKLAEKSAAA 1139
Query: 91 VAYMRLK 97
A + LK
Sbjct: 1140 EALLWLK 1146
>gi|270308287|ref|YP_003330345.1| ribonuclease III [Dehalococcoides sp. VS]
gi|270154179|gb|ACZ62017.1| ribonuclease III [Dehalococcoides sp. VS]
Length = 248
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 31 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK+ LQEL Q + P Y T SG H FV+ V +V + +SKK+AE SAA
Sbjct: 172 YKSRLQELIQAQMQMTPRYRITNFSGPEHNRLFVAEVYTEDKVLAEGSGRSKKEAETSAA 231
Query: 90 KVA 92
K A
Sbjct: 232 KAA 234
>gi|450159067|ref|ZP_21879220.1| ribonuclease III [Streptococcus mutans 66-2A]
gi|449241636|gb|EMC40257.1| ribonuclease III [Streptococcus mutans 66-2A]
Length = 231
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK LQEL Q + L Y K+SG +HA F V + E S KSKK AE AA
Sbjct: 161 YKTALQELLQVDGDVLIDYEVLKESGPAHAKCFEVAVSMNHEKLSSGTGKSKKLAEQEAA 220
Query: 90 KVAYMRLK 97
K A +L+
Sbjct: 221 KNALEKLQ 228
>gi|254452330|ref|ZP_05065767.1| ribonuclease III [Octadecabacter arcticus 238]
gi|198266736|gb|EDY91006.1| ribonuclease III [Octadecabacter arcticus 238]
Length = 197
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 21 FTNQEDDSVLYKNVLQELAQKEAYALPVY-NTKQSGESHAPTFVSTVEVGGEVFSGQGAK 79
+N E+D+ K LQE AQ + P Y T +SG HAP F V + A
Sbjct: 116 ISNVEEDARDPKTALQEWAQGQGEPPPSYIETARSGPDHAPIFTIEVRLHSGATDTATAP 175
Query: 80 SKKQAEMSAAK 90
SK+QAE +AAK
Sbjct: 176 SKRQAEQAAAK 186
>gi|260800185|ref|XP_002595015.1| hypothetical protein BRAFLDRAFT_237436 [Branchiostoma floridae]
gi|229280255|gb|EEN51026.1| hypothetical protein BRAFLDRAFT_237436 [Branchiostoma floridae]
Length = 634
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 29/38 (76%), Gaps = 1/38 (2%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
QSG HAP FV +VE+ G+ F G+G ++KK+A++ AA+
Sbjct: 39 QSGPPHAPEFVMSVEMNGQTFKGRG-RTKKEAKLRAAE 75
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 14/93 (15%)
Query: 34 VLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAY 93
+L EL Y L ++GESHA FV V + G G G +SKK A++ AA+ A
Sbjct: 164 ILNELRPGLKYEL----VSETGESHAKNFVMAVTIDGRTCEGSG-RSKKLAKIRAAQAAL 218
Query: 94 MRLKE----PNPSQGPALVSPDI-----QAQAD 117
+ P+P + P L S + QA AD
Sbjct: 219 QEIFNYQFTPSPGKEPILSSEGVSSHQTQALAD 251
>gi|218780584|ref|YP_002431902.1| ribonuclease III [Desulfatibacillum alkenivorans AK-01]
gi|218761968|gb|ACL04434.1| Ribonuclease III [Desulfatibacillum alkenivorans AK-01]
Length = 535
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 31 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSA 88
YK LQE AQ + P Y ++ G H TFV+ V E F+ QG +SKK AE A
Sbjct: 463 YKTRLQEYAQSKLRITPSYELIREFGPDHEKTFVAQATVNKE-FTSQGKGRSKKAAEQDA 521
Query: 89 AKVAYMRLKEPNPS 102
A+ + L + +PS
Sbjct: 522 AREVLILLGQEDPS 535
>gi|450179695|ref|ZP_21886745.1| ribonuclease III [Streptococcus mutans 24]
gi|449248803|gb|EMC47022.1| ribonuclease III [Streptococcus mutans 24]
Length = 231
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK LQEL Q + L Y K+SG +HA F V + E S KSKK AE AA
Sbjct: 161 YKTALQELLQVDGDVLIDYEVLKESGPAHAKCFEVAVSMNHEKLSSGTGKSKKLAEQEAA 220
Query: 90 KVAYMRLK 97
K A +L+
Sbjct: 221 KNALEKLQ 228
>gi|449920226|ref|ZP_21798388.1| ribonuclease III [Streptococcus mutans 1SM1]
gi|449158830|gb|EMB62236.1| ribonuclease III [Streptococcus mutans 1SM1]
Length = 231
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK LQEL Q + L Y K+SG +HA F V + E S KSKK AE AA
Sbjct: 161 YKTALQELLQVDGDVLIDYEVLKESGPAHAKCFEVAVSMNHEKLSSGTGKSKKLAEQEAA 220
Query: 90 KVAYMRLK 97
K A +L+
Sbjct: 221 KNALEKLQ 228
>gi|418743679|ref|ZP_13300038.1| ribonuclease III [Leptospira santarosai str. CBC379]
gi|418751592|ref|ZP_13307876.1| ribonuclease III [Leptospira santarosai str. MOR084]
gi|421111669|ref|ZP_15572142.1| ribonuclease III [Leptospira santarosai str. JET]
gi|409968065|gb|EKO35878.1| ribonuclease III [Leptospira santarosai str. MOR084]
gi|410795074|gb|EKR92971.1| ribonuclease III [Leptospira santarosai str. CBC379]
gi|410802865|gb|EKS09010.1| ribonuclease III [Leptospira santarosai str. JET]
Length = 248
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK LQE +QK +LPVY K +SG H+ F +V + + + SKK AE +AA
Sbjct: 177 YKTQLQEYSQKHFKSLPVYRIKGESGPDHSKMFQVSVRIRDKWEANGYGASKKTAEQNAA 236
Query: 90 KVAYMRLKE 98
K + R+++
Sbjct: 237 KELFNRIRK 245
>gi|449876824|ref|ZP_21782982.1| ribonuclease III [Streptococcus mutans S1B]
gi|449976057|ref|ZP_21816088.1| ribonuclease III [Streptococcus mutans 11VS1]
gi|449176047|gb|EMB78414.1| ribonuclease III [Streptococcus mutans 11VS1]
gi|449251723|gb|EMC49726.1| ribonuclease III [Streptococcus mutans S1B]
Length = 231
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK LQEL Q + L Y K+SG +HA F V + E S KSKK AE AA
Sbjct: 161 YKTALQELLQVDGDVLIDYEVLKESGPAHAKCFEVAVSMNHEKLSSGTGKSKKLAEQEAA 220
Query: 90 KVAYMRLK 97
K A +L+
Sbjct: 221 KNALEKLQ 228
>gi|449958502|ref|ZP_21809787.1| ribonuclease III [Streptococcus mutans 4VF1]
gi|450139209|ref|ZP_21872433.1| ribonuclease III [Streptococcus mutans NLML1]
gi|450176818|ref|ZP_21886044.1| ribonuclease III [Streptococcus mutans SM1]
gi|449170000|gb|EMB72745.1| ribonuclease III [Streptococcus mutans 4VF1]
gi|449233214|gb|EMC32293.1| ribonuclease III [Streptococcus mutans NLML1]
gi|449244617|gb|EMC42987.1| ribonuclease III [Streptococcus mutans SM1]
Length = 231
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK LQEL Q + L Y K+SG +HA F V + E S KSKK AE AA
Sbjct: 161 YKTALQELLQVDGDVLIDYEVLKESGPAHAKCFEVAVSMNHEKLSSGTGKSKKLAEQEAA 220
Query: 90 KVAYMRLK 97
K A +L+
Sbjct: 221 KNALEKLQ 228
>gi|449930017|ref|ZP_21801928.1| ribonuclease III [Streptococcus mutans 3SN1]
gi|449163899|gb|EMB66988.1| ribonuclease III [Streptococcus mutans 3SN1]
Length = 231
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK LQEL Q + L Y K+SG +HA F V + E S KSKK AE AA
Sbjct: 161 YKTALQELLQVDGDVLIDYEVLKESGPAHAKCFEVAVSMNHEKLSSGTGKSKKLAEQEAA 220
Query: 90 KVAYMRLK 97
K A +L+
Sbjct: 221 KNALEKLQ 228
>gi|290580116|ref|YP_003484508.1| ribonuclease III [Streptococcus mutans NN2025]
gi|387785786|ref|YP_006250882.1| putative ribonuclease III [Streptococcus mutans LJ23]
gi|397650125|ref|YP_006490652.1| ribonuclease III [Streptococcus mutans GS-5]
gi|449883155|ref|ZP_21784950.1| ribonuclease III [Streptococcus mutans SA38]
gi|449886646|ref|ZP_21786331.1| ribonuclease III [Streptococcus mutans SA41]
gi|449896580|ref|ZP_21789793.1| ribonuclease III [Streptococcus mutans R221]
gi|449903105|ref|ZP_21791946.1| ribonuclease III [Streptococcus mutans M230]
gi|449910394|ref|ZP_21794689.1| ribonuclease III [Streptococcus mutans OMZ175]
gi|449915436|ref|ZP_21796285.1| ribonuclease III [Streptococcus mutans 15JP3]
gi|449923956|ref|ZP_21799326.1| ribonuclease III [Streptococcus mutans 4SM1]
gi|449936957|ref|ZP_21804303.1| ribonuclease III [Streptococcus mutans 2ST1]
gi|449942733|ref|ZP_21806143.1| ribonuclease III [Streptococcus mutans 11A1]
gi|449948097|ref|ZP_21807841.1| ribonuclease III [Streptococcus mutans 11SSST2]
gi|449965596|ref|ZP_21811915.1| ribonuclease III [Streptococcus mutans 15VF2]
gi|449969401|ref|ZP_21813219.1| ribonuclease III [Streptococcus mutans 2VS1]
gi|449981797|ref|ZP_21817972.1| ribonuclease III [Streptococcus mutans 5SM3]
gi|449985613|ref|ZP_21819761.1| ribonuclease III [Streptococcus mutans NFSM2]
gi|449988985|ref|ZP_21820855.1| ribonuclease III [Streptococcus mutans NVAB]
gi|450001131|ref|ZP_21825544.1| ribonuclease III [Streptococcus mutans N29]
gi|450004965|ref|ZP_21826386.1| ribonuclease III [Streptococcus mutans NMT4863]
gi|450009568|ref|ZP_21828167.1| ribonuclease III [Streptococcus mutans A19]
gi|450022617|ref|ZP_21830065.1| ribonuclease III [Streptococcus mutans U138]
gi|450029673|ref|ZP_21832794.1| ribonuclease III [Streptococcus mutans G123]
gi|450040444|ref|ZP_21836806.1| ribonuclease III [Streptococcus mutans T4]
gi|450045382|ref|ZP_21838444.1| ribonuclease III [Streptococcus mutans N34]
gi|450057211|ref|ZP_21842431.1| ribonuclease III [Streptococcus mutans NLML4]
gi|450062246|ref|ZP_21844215.1| ribonuclease III [Streptococcus mutans NLML5]
gi|450067623|ref|ZP_21846753.1| ribonuclease III [Streptococcus mutans NLML9]
gi|450070918|ref|ZP_21847870.1| ribonuclease III [Streptococcus mutans M2A]
gi|450076690|ref|ZP_21849975.1| ribonuclease III [Streptococcus mutans N3209]
gi|450086822|ref|ZP_21853909.1| ribonuclease III [Streptococcus mutans NV1996]
gi|450092975|ref|ZP_21856361.1| ribonuclease III [Streptococcus mutans W6]
gi|450097913|ref|ZP_21857712.1| ribonuclease III [Streptococcus mutans SF1]
gi|450111244|ref|ZP_21862577.1| ribonuclease III [Streptococcus mutans SM6]
gi|450115163|ref|ZP_21863766.1| ribonuclease III [Streptococcus mutans ST1]
gi|450120101|ref|ZP_21865491.1| ribonuclease III [Streptococcus mutans ST6]
gi|450128458|ref|ZP_21868976.1| ribonuclease III [Streptococcus mutans U2A]
gi|450132303|ref|ZP_21869976.1| ribonuclease III [Streptococcus mutans NLML8]
gi|450144543|ref|ZP_21874088.1| ribonuclease III [Streptococcus mutans 1ID3]
gi|450148952|ref|ZP_21875891.1| ribonuclease III [Streptococcus mutans 14D]
gi|450153375|ref|ZP_21877182.1| ribonuclease III [Streptococcus mutans 21]
gi|450164294|ref|ZP_21881265.1| ribonuclease III [Streptococcus mutans B]
gi|450169338|ref|ZP_21882938.1| ribonuclease III [Streptococcus mutans SM4]
gi|254997015|dbj|BAH87616.1| putative ribonuclease III [Streptococcus mutans NN2025]
gi|379132187|dbj|BAL68939.1| putative ribonuclease III [Streptococcus mutans LJ23]
gi|392603694|gb|AFM81858.1| ribonuclease III [Streptococcus mutans GS-5]
gi|449149964|gb|EMB53742.1| ribonuclease III [Streptococcus mutans 11A1]
gi|449150611|gb|EMB54371.1| ribonuclease III [Streptococcus mutans 1ID3]
gi|449153291|gb|EMB56977.1| ribonuclease III [Streptococcus mutans NLML8]
gi|449156564|gb|EMB60031.1| ribonuclease III [Streptococcus mutans 15JP3]
gi|449163527|gb|EMB66630.1| ribonuclease III [Streptococcus mutans 4SM1]
gi|449165032|gb|EMB68062.1| ribonuclease III [Streptococcus mutans 2ST1]
gi|449167960|gb|EMB70809.1| ribonuclease III [Streptococcus mutans 11SSST2]
gi|449171066|gb|EMB73743.1| ribonuclease III [Streptococcus mutans 15VF2]
gi|449174220|gb|EMB76725.1| ribonuclease III [Streptococcus mutans 2VS1]
gi|449175505|gb|EMB77915.1| ribonuclease III [Streptococcus mutans 5SM3]
gi|449178974|gb|EMB81208.1| ribonuclease III [Streptococcus mutans NFSM2]
gi|449183233|gb|EMB85225.1| ribonuclease III [Streptococcus mutans NVAB]
gi|449184921|gb|EMB86831.1| ribonuclease III [Streptococcus mutans N29]
gi|449189156|gb|EMB90833.1| ribonuclease III [Streptococcus mutans NMT4863]
gi|449190861|gb|EMB92406.1| ribonuclease III [Streptococcus mutans A19]
gi|449194139|gb|EMB95504.1| ribonuclease III [Streptococcus mutans G123]
gi|449194726|gb|EMB96073.1| ribonuclease III [Streptococcus mutans U138]
gi|449198938|gb|EMC00026.1| ribonuclease III [Streptococcus mutans T4]
gi|449200451|gb|EMC01479.1| ribonuclease III [Streptococcus mutans N34]
gi|449205570|gb|EMC06309.1| ribonuclease III [Streptococcus mutans NLML4]
gi|449206170|gb|EMC06885.1| ribonuclease III [Streptococcus mutans NLML5]
gi|449207926|gb|EMC08574.1| ribonuclease III [Streptococcus mutans NLML9]
gi|449212320|gb|EMC12693.1| ribonuclease III [Streptococcus mutans N3209]
gi|449213161|gb|EMC13504.1| ribonuclease III [Streptococcus mutans M2A]
gi|449217589|gb|EMC17630.1| ribonuclease III [Streptococcus mutans W6]
gi|449219025|gb|EMC19011.1| ribonuclease III [Streptococcus mutans NV1996]
gi|449221970|gb|EMC21712.1| ribonuclease III [Streptococcus mutans SF1]
gi|449224014|gb|EMC23670.1| ribonuclease III [Streptococcus mutans SM6]
gi|449228279|gb|EMC27654.1| ribonuclease III [Streptococcus mutans ST1]
gi|449229529|gb|EMC28839.1| ribonuclease III [Streptococcus mutans U2A]
gi|449230588|gb|EMC29840.1| ribonuclease III [Streptococcus mutans ST6]
gi|449235188|gb|EMC34160.1| ribonuclease III [Streptococcus mutans 14D]
gi|449238994|gb|EMC37730.1| ribonuclease III [Streptococcus mutans 21]
gi|449242224|gb|EMC40825.1| ribonuclease III [Streptococcus mutans B]
gi|449247478|gb|EMC45758.1| ribonuclease III [Streptococcus mutans SM4]
gi|449250176|gb|EMC48250.1| ribonuclease III [Streptococcus mutans SA38]
gi|449253905|gb|EMC51838.1| ribonuclease III [Streptococcus mutans SA41]
gi|449259703|gb|EMC57223.1| ribonuclease III [Streptococcus mutans OMZ175]
gi|449261655|gb|EMC59123.1| ribonuclease III [Streptococcus mutans M230]
gi|449261943|gb|EMC59402.1| ribonuclease III [Streptococcus mutans R221]
Length = 231
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK LQEL Q + L Y K+SG +HA F V + E S KSKK AE AA
Sbjct: 161 YKTALQELLQVDGDVLIDYEVLKESGPAHAKCFEVAVSMNHEKLSSGTGKSKKLAEQEAA 220
Query: 90 KVAYMRLK 97
K A +L+
Sbjct: 221 KNALEKLQ 228
>gi|163793042|ref|ZP_02187018.1| SsrA-binding protein [alpha proteobacterium BAL199]
gi|159181688|gb|EDP66200.1| SsrA-binding protein [alpha proteobacterium BAL199]
Length = 227
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 32 KNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
K LQE AQ LPVY T +Q+G +HAP F V V G KSK+ AE AA
Sbjct: 160 KTGLQEWAQGRRLPLPVYTTVEQTGPAHAPEFTVEVVVEGLAPQRASGKSKRLAEQLAA 218
>gi|24379904|ref|NP_721859.1| ribonuclease III [Streptococcus mutans UA159]
gi|449865592|ref|ZP_21779071.1| ribonuclease III [Streptococcus mutans U2B]
gi|449870030|ref|ZP_21780421.1| ribonuclease III [Streptococcus mutans 8ID3]
gi|450036656|ref|ZP_21835579.1| ribonuclease III [Streptococcus mutans M21]
gi|450082186|ref|ZP_21852201.1| ribonuclease III [Streptococcus mutans N66]
gi|450106671|ref|ZP_21860623.1| ribonuclease III [Streptococcus mutans SF14]
gi|81451148|sp|Q8DT66.1|RNC_STRMU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|24377882|gb|AAN59165.1|AE014983_6 putative ribonuclease III [Streptococcus mutans UA159]
gi|449157259|gb|EMB60706.1| ribonuclease III [Streptococcus mutans 8ID3]
gi|449193614|gb|EMB94994.1| ribonuclease III [Streptococcus mutans M21]
gi|449214558|gb|EMC14814.1| ribonuclease III [Streptococcus mutans N66]
gi|449223107|gb|EMC22812.1| ribonuclease III [Streptococcus mutans SF14]
gi|449264141|gb|EMC61490.1| ribonuclease III [Streptococcus mutans U2B]
Length = 231
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK LQEL Q + L Y K+SG +HA F V + E S KSKK AE AA
Sbjct: 161 YKTALQELLQVDGDVLIDYEVLKESGPAHAKCFEVAVSMNHEKLSSGTGKSKKLAEQEAA 220
Query: 90 KVAYMRLK 97
K A +L+
Sbjct: 221 KNALEKLQ 228
>gi|410456969|ref|ZP_11310816.1| ribonuclease III [Bacillus bataviensis LMG 21833]
gi|409926943|gb|EKN64094.1| ribonuclease III [Bacillus bataviensis LMG 21833]
Length = 246
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
+K+ LQEL Q++ + Y Q G +H FVS V + GE KSKK+AE AA
Sbjct: 175 FKSQLQELIQRDGTGMIEYRVLQEKGPAHNKEFVSKVSLNGEELGVGTGKSKKEAEQHAA 234
Query: 90 KVAYMRLK 97
++A LK
Sbjct: 235 QMALGVLK 242
>gi|109947401|ref|YP_664629.1| ribonuclease III [Helicobacter acinonychis str. Sheeba]
gi|122973320|sp|Q17XJ6.1|RNC_HELAH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|109714622|emb|CAJ99630.1| ribonuclease III (RNase III) [Helicobacter acinonychis str. Sheeba]
Length = 234
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Query: 2 LEKQIELLRSMQRSQLSMMF--TNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESH 58
LE ++ +R + ++ L+ + + E SV YK LQEL Q + +P Y K+ G +H
Sbjct: 133 LEAGLDKVRKIMQNLLNRAYKRLDLEHLSVDYKTALQELTQAQFCVIPTYQLLKEKGPAH 192
Query: 59 APTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 97
F + + ++++ KSKK+AE A A +LK
Sbjct: 193 HKEFEMVLYIQNQMYATAKGKSKKEAEQQCAYQALQKLK 231
>gi|336437038|ref|ZP_08616747.1| ribonuclease III [Lachnospiraceae bacterium 1_4_56FAA]
gi|336006172|gb|EGN36208.1| ribonuclease III [Lachnospiraceae bacterium 1_4_56FAA]
Length = 236
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 19 MMFTNQEDDSVLY--KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSG 75
+ ++ ED + + K +LQE+ Q + Y T + G H F E+GG +
Sbjct: 152 FILSDLEDKKLFFDSKTILQEIVQAKGKEAVNYRLTGEDGPDHNKVFSVNAEIGGVSYGS 211
Query: 76 QGAKSKKQAEMSAAKVAYMRLKE 98
+SKK AE AA A +RLK+
Sbjct: 212 GKGRSKKAAEQEAAYRAILRLKK 234
>gi|281353109|gb|EFB28693.1| hypothetical protein PANDA_013628 [Ailuropoda melanoleuca]
Length = 637
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 87
SV KN L +L L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 60 SVTPKNALVQLHDLRP-GLQYRMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMR 117
Query: 88 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
AA++A + PN Q + D++S
Sbjct: 118 AAELALRSFVQFPNACQAHLAMGSGAGPSTDFTS 151
>gi|220928138|ref|YP_002505047.1| ribonuclease III [Clostridium cellulolyticum H10]
gi|219998466|gb|ACL75067.1| ribonuclease III [Clostridium cellulolyticum H10]
Length = 236
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 31 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSA 88
YK LQEL Q+ Y+ T Q G H TF++ V++ G + G+G SKK+AE +A
Sbjct: 167 YKTQLQELVQQNGEQQITYSVTDQFGPDHNKTFITEVKINGAI-QGRGKGHSKKEAEQNA 225
Query: 89 AKVAYMRLK 97
AK A LK
Sbjct: 226 AKNALNNLK 234
>gi|296863410|pdb|3ADG|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
gi|296863411|pdb|3ADI|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
gi|296863412|pdb|3ADI|B Chain B, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
gi|296863413|pdb|3ADI|C Chain C, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
Length = 73
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEM 86
S ++K+ LQE AQK PVY + G SH F STV + G + S G ++K AE
Sbjct: 2 SHVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQ 61
Query: 87 SAAKVAYMRL 96
SAA+VA L
Sbjct: 62 SAAEVALREL 71
>gi|429730866|ref|ZP_19265512.1| ribonuclease III [Corynebacterium durum F0235]
gi|429147304|gb|EKX90334.1| ribonuclease III [Corynebacterium durum F0235]
Length = 255
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVG-GEVFSGQGAKSKKQAEMSAA 89
+K LQ L + P Y T G H F + VG E+ +G+G SKKQAE AA
Sbjct: 180 WKTALQNLVSERRLPQPEYETSSVGPDHDLVFTAIARVGEAELGTGKGP-SKKQAEQQAA 238
Query: 90 KVAYMRLKE 98
+VA+ L++
Sbjct: 239 RVAFHALRD 247
>gi|83855027|ref|ZP_00948557.1| Ribonuclease III [Sulfitobacter sp. NAS-14.1]
gi|83941550|ref|ZP_00954012.1| Ribonuclease III [Sulfitobacter sp. EE-36]
gi|83842870|gb|EAP82037.1| Ribonuclease III [Sulfitobacter sp. NAS-14.1]
gi|83847370|gb|EAP85245.1| Ribonuclease III [Sulfitobacter sp. EE-36]
Length = 228
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 32 KNVLQELAQKEAYALPVY-NTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
K LQE AQ P Y T + G HAP F T + + A SK+QAE +AAK
Sbjct: 159 KTALQEWAQARGLPPPAYVQTDRQGPDHAPVFTITARIENGASAVASAPSKRQAEQAAAK 218
Query: 91 VAYMRLKEPN 100
+L+ P+
Sbjct: 219 TLLAQLERPS 228
>gi|15892080|ref|NP_359794.1| ribonuclease III [Rickettsia conorii str. Malish 7]
gi|22654066|sp|Q92JB0.1|RNC_RICCN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|15619202|gb|AAL02695.1| ribonuclease III [Rickettsia conorii str. Malish 7]
Length = 227
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 32 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
K LQE AQ + LP+Y K+ G SH+ TF V+V +G G + K+AE +AA+
Sbjct: 160 KTALQEWAQASDHHLPIYRLIKREGASHSSTFTVLVKVKDYEQTGTG-HTIKEAEKNAAR 218
Query: 91 VAYMRLK 97
RLK
Sbjct: 219 SLLHRLK 225
>gi|420474166|ref|ZP_14972842.1| ribonuclease III [Helicobacter pylori Hp H-19]
gi|393089302|gb|EJB89942.1| ribonuclease III [Helicobacter pylori Hp H-19]
Length = 239
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYQALQKLKE 237
>gi|116515099|ref|YP_802728.1| hypothetical protein BCc_163 [Buchnera aphidicola BCc]
gi|122285505|sp|Q057R4.1|RNC_BUCCC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|116256953|gb|ABJ90635.1| ribonuclease III [Buchnera aphidicola BCc]
Length = 226
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 32 KNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGG--EVFSGQGAKSKKQAEMSA 88
K LQE Q + ++LP+Y+ Q GE+H F ++ G E+ G GA S+++AE A
Sbjct: 157 KTRLQEYLQSKHFSLPIYSIGQIYGEAHNQIFTIYCKIDGLSELLIGIGA-SRRKAEQDA 215
Query: 89 AKVAYMRL 96
A+ A +RL
Sbjct: 216 AQNALIRL 223
>gi|420451984|ref|ZP_14950834.1| ribonuclease III [Helicobacter pylori Hp A-6]
gi|393069825|gb|EJB70620.1| ribonuclease III [Helicobacter pylori Hp A-6]
Length = 239
Score = 41.2 bits (95), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYQALQKLKE 237
>gi|384515974|ref|YP_005711066.1| ribonuclease III [Corynebacterium ulcerans 809]
gi|397654323|ref|YP_006495006.1| ribonuclease III [Corynebacterium ulcerans 0102]
gi|334697175|gb|AEG81972.1| ribonuclease III [Corynebacterium ulcerans 809]
gi|393403279|dbj|BAM27771.1| ribonuclease III [Corynebacterium ulcerans 0102]
Length = 249
Score = 41.2 bits (95), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQE A + +PVY +G H+ TF + V VG +KK AE +AA
Sbjct: 177 WKTTLQERAAERKLPVPVYEASSTGPEHSQTFTAVVTVGTTALGEGVGPNKKLAEQAAAH 236
Query: 91 VAYMRLKEPNPS 102
A + L+E NP+
Sbjct: 237 KAVVFLQE-NPT 247
>gi|255521158|ref|ZP_05388395.1| ribonuclease III [Listeria monocytogenes FSL J1-175]
Length = 147
Score = 41.2 bits (95), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 86
+V YK LQE+ Q++ L Y+ ++G +H F + V V G+V ++KKQAE
Sbjct: 75 TVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQ 134
Query: 87 SAAKVAYMRL 96
SAA+ A +L
Sbjct: 135 SAAQFAINQL 144
>gi|395532085|ref|XP_003768102.1| PREDICTED: double-stranded RNA-specific adenosine deaminase
[Sarcophilus harrisii]
Length = 1151
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 59/150 (39%), Gaps = 15/150 (10%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYM 94
L E A+ +A QSG H P F+ +VGG F A SKKQ + AA A
Sbjct: 679 LFEYARSNGFAAEFKLVDQSGPPHEPKFIYQAKVGGRWFPAVSAHSKKQGKQEAADAALR 738
Query: 95 ----------RLKEPNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGRLVFN 144
R+ S+ P L + Q S S++TA + HN+ GR +
Sbjct: 739 VLIGETERAKRIGGLGISELP-LTGSTLHDQVAMLSHQCFSSLTAPIQHNL--LGRKILA 795
Query: 145 PNSMPKVQAE--EIRELTTVNTEVAGYDLS 172
M K + + T N V G +LS
Sbjct: 796 AIIMKKSDDDLGLVVSFGTGNRCVKGEELS 825
Score = 37.0 bits (84), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 33 NVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
+VL E QK Q G +H P F V++G + F A SKK A+ AA+VA
Sbjct: 562 SVLMEHVQKSGSTCEFLLISQEGPAHDPKFKYCVKMGSQTFPTMMANSKKAAKQMAAEVA 621
Query: 93 YMRL-KEPN 100
L +PN
Sbjct: 622 VKALCGDPN 630
>gi|301777794|ref|XP_002924315.1| PREDICTED: double-stranded RNA-specific editase B2-like [Ailuropoda
melanoleuca]
Length = 1006
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 87
SV KN L +L L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 423 SVTPKNALVQLHDLRP-GLQYRMVSQTGPVHAPVFAVAVEVNGLTFEGTG-PTKKKAKMR 480
Query: 88 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
AA++A + PN Q + D++S
Sbjct: 481 AAELALRSFVQFPNACQAHLAMGSGAGPSTDFTS 514
>gi|348025313|ref|YP_004765117.1| ribonuclease 3 [Megasphaera elsdenii DSM 20460]
gi|341821366|emb|CCC72290.1| ribonuclease 3 [Megasphaera elsdenii DSM 20460]
Length = 238
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQS-GESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK + QE Q+E Y +S G H TF V+V G+V K+KK AE AA
Sbjct: 167 YKTLFQEYVQQEGPQHIEYELCRSEGPDHDKTFYMEVKVNGKVLGEGSGKTKKDAEQHAA 226
Query: 90 KVAYMRLK 97
A M+LK
Sbjct: 227 HTALMKLK 234
>gi|339500023|ref|YP_004698058.1| ribonuclease 3 [Spirochaeta caldaria DSM 7334]
gi|338834372|gb|AEJ19550.1| Ribonuclease 3 [Spirochaeta caldaria DSM 7334]
Length = 249
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 6 IELLRSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVS 64
E + ++ + TNQ YK +LQE Q+ P Y K++G H F
Sbjct: 156 FEFISKYLEVEIERVVTNQHHRD--YKTLLQEKCQQLYKNYPTYTLLKRTGPDHERMFWV 213
Query: 65 TVEVGGEVFSGQGAKSKKQAEMSAAKVAY 93
V V G + K+KK+AE AAK+AY
Sbjct: 214 EVHVNGVAYGPGIGKNKKEAEQEAAKLAY 242
>gi|420487360|ref|ZP_14985964.1| ribonuclease III [Helicobacter pylori Hp P-8]
gi|420521143|ref|ZP_15019574.1| ribonuclease III [Helicobacter pylori Hp P-8b]
gi|393101937|gb|EJC02503.1| ribonuclease III [Helicobacter pylori Hp P-8]
gi|393127730|gb|EJC28175.1| ribonuclease III [Helicobacter pylori Hp P-8b]
Length = 239
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYQALQKLKE 237
>gi|385222103|ref|YP_005771236.1| ribonuclease III [Helicobacter pylori SouthAfrica7]
gi|317010882|gb|ADU84629.1| ribonuclease III [Helicobacter pylori SouthAfrica7]
Length = 234
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Query: 2 LEKQIELLRSMQRSQLSMMF--TNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESH 58
LE ++ +R + ++ L+ + + E SV YK LQEL Q + +P Y K+ G +H
Sbjct: 133 LEAGLDKVRKIMQNLLNRAYKRLDLEHLSVDYKTALQELTQAQFCVIPTYQLLKEKGPAH 192
Query: 59 APTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 97
F + + ++++ KSKK+AE A A +LK
Sbjct: 193 HKEFEMALYIQNQMYATAKGKSKKEAEQQCAYQALQKLK 231
>gi|312143881|ref|YP_003995327.1| ribonuclease III [Halanaerobium hydrogeniformans]
gi|311904532|gb|ADQ14973.1| ribonuclease III [Halanaerobium hydrogeniformans]
Length = 238
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVG-GEVFSGQGAKSKKQAEMSA 88
YK +LQE+ Q++ P Y + G H TF+ V++ + SGQG+ SKK+AE A
Sbjct: 167 YKTMLQEIIQQDGNIRPEYEVIDEKGPDHNKTFIVAVKLKENSLGSGQGS-SKKEAEQEA 225
Query: 89 AKVAYMRL 96
AK A +L
Sbjct: 226 AKFALHKL 233
>gi|88856701|ref|ZP_01131356.1| ribonuclease III [marine actinobacterium PHSC20C1]
gi|88813998|gb|EAR23865.1| ribonuclease III [marine actinobacterium PHSC20C1]
Length = 233
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%)
Query: 32 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 91
K LQELA + +P Y + SG H+ F +++ + +V + SKKQAEM+AA
Sbjct: 164 KTSLQELAAQLGRGVPDYRIEDSGPDHSKRFHASLVLSNDVIATGTGSSKKQAEMAAALE 223
Query: 92 AYMRLK 97
A+ L+
Sbjct: 224 AWTILQ 229
>gi|15611674|ref|NP_223325.1| ribonuclease III [Helicobacter pylori J99]
gi|420465360|ref|ZP_14964127.1| ribonuclease III [Helicobacter pylori Hp H-6]
gi|7531198|sp|Q9ZLH2.1|RNC_HELPJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|4155159|gb|AAD06188.1| RIBONUCLEASE III [Helicobacter pylori J99]
gi|393082847|gb|EJB83563.1| ribonuclease III [Helicobacter pylori Hp H-6]
Length = 239
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYQALQKLKE 237
>gi|386775221|ref|ZP_10097599.1| RNAse III [Brachybacterium paraconglomeratum LC44]
Length = 250
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K+ LQE+A E + VY +SG H TF +TV V G V + SKK AE++AA+
Sbjct: 174 FKSRLQEIAAAEGKDV-VYALTESGLEHQKTFTATVTVEGVVTARGDGASKKDAELAAAQ 232
>gi|357521527|ref|XP_003631052.1| ATP-dependent RNA helicase A-like protein [Medicago truncatula]
gi|355525074|gb|AET05528.1| ATP-dependent RNA helicase A-like protein [Medicago truncatula]
Length = 1214
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 32 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 91
KN LQ + + LP Y T+ E F STV G F GQ SKK AE SAA
Sbjct: 1117 KNQLQTFLSRAGHQLPTYKTQ---ELRNNQFRSTVIFNGLDFVGQPCNSKKLAEKSAAAE 1173
Query: 92 AYMRLKEPN 100
A + LK N
Sbjct: 1174 AILWLKGDN 1182
>gi|384897375|ref|YP_005772803.1| ribonuclease III [Helicobacter pylori Lithuania75]
gi|317012480|gb|ADU83088.1| ribonuclease III [Helicobacter pylori Lithuania75]
Length = 239
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYQALQKLKE 237
>gi|434381810|ref|YP_006703593.1| ribonuclease III [Brachyspira pilosicoli WesB]
gi|404430459|emb|CCG56505.1| ribonuclease III [Brachyspira pilosicoli WesB]
Length = 229
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
YK +LQE+ QK+ P Y + + E+ F V V + ++ KSKK+AE++AAK
Sbjct: 161 YKTILQEIVQKKYKITPTYKSYEYNENDNIMFKVEVYVKTKKYASGVGKSKKEAEINAAK 220
Query: 91 VA 92
A
Sbjct: 221 KA 222
>gi|350273169|ref|YP_004884482.1| ribonuclease III [Rickettsia japonica YH]
gi|348592382|dbj|BAK96343.1| ribonuclease III [Rickettsia japonica YH]
Length = 227
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 32 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
K LQE AQ + LP+Y K+ G SH+ TF V+V +G G + K+AE +AA+
Sbjct: 160 KTALQEWAQASDHHLPIYRLIKREGASHSSTFTVLVKVKDYEQTGTG-HTIKEAEKNAAR 218
Query: 91 VAYMRLK 97
RLK
Sbjct: 219 SLLHRLK 225
>gi|337291062|ref|YP_004630083.1| ribonuclease III [Corynebacterium ulcerans BR-AD22]
gi|334699368|gb|AEG84164.1| ribonuclease III [Corynebacterium ulcerans BR-AD22]
Length = 249
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQE A + +PVY +G H+ TF + V VG +KK AE +AA
Sbjct: 177 WKTTLQERAAERKLPVPVYEASSTGPEHSQTFTAVVTVGTTALGEGIGPNKKLAEQAAAH 236
Query: 91 VAYMRLKEPNPS 102
A + L+E NP+
Sbjct: 237 KAVVFLQE-NPT 247
>gi|420495956|ref|ZP_14994520.1| ribonuclease III [Helicobacter pylori Hp P-23]
gi|393112267|gb|EJC12788.1| ribonuclease III [Helicobacter pylori Hp P-23]
Length = 239
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHYKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYQALQKLKE 237
>gi|420418603|ref|ZP_14917695.1| ribonuclease III [Helicobacter pylori NQ4076]
gi|393033429|gb|EJB34492.1| ribonuclease III [Helicobacter pylori NQ4076]
Length = 239
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QNKMYATAKGKSKKEAEQQCAYQALQKLKE 237
>gi|302036171|ref|YP_003796493.1| ribonuclease III [Candidatus Nitrospira defluvii]
gi|300604235|emb|CBK40567.1| Ribonuclease III [Candidatus Nitrospira defluvii]
Length = 234
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSA 88
YK LQE+ QK +LP Y T ++SG H F + + G V G G +SKK+AE A
Sbjct: 167 YKTQLQEVCQKRYESLPQYETVRESGPDHEKVFEVELTIQG-VMRGIGRGRSKKEAEQMA 225
Query: 89 AKVAYMRL 96
AK A +L
Sbjct: 226 AKEALTQL 233
>gi|420489139|ref|ZP_14987735.1| ribonuclease III [Helicobacter pylori Hp P-11]
gi|420522816|ref|ZP_15021240.1| ribonuclease III [Helicobacter pylori Hp P-11b]
gi|393107521|gb|EJC08063.1| ribonuclease III [Helicobacter pylori Hp P-11]
gi|393129773|gb|EJC30207.1| ribonuclease III [Helicobacter pylori Hp P-11b]
Length = 239
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYQALQKLKE 237
>gi|420484013|ref|ZP_14982639.1| ribonuclease III [Helicobacter pylori Hp P-3]
gi|420514282|ref|ZP_15012755.1| ribonuclease III [Helicobacter pylori Hp P-3b]
gi|420519618|ref|ZP_15018060.1| ribonuclease III [Helicobacter pylori Hp H-5b]
gi|393100880|gb|EJC01453.1| ribonuclease III [Helicobacter pylori Hp P-3]
gi|393126682|gb|EJC27130.1| ribonuclease III [Helicobacter pylori Hp H-5b]
gi|393158745|gb|EJC59005.1| ribonuclease III [Helicobacter pylori Hp P-3b]
Length = 239
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 100
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYQALQKLKEAK 239
>gi|384891043|ref|YP_005765176.1| Ribonuclease III [Helicobacter pylori 908]
gi|385223716|ref|YP_005783642.1| Ribonuclease III [Helicobacter pylori 2017]
gi|385231567|ref|YP_005791486.1| Ribonuclease III [Helicobacter pylori 2018]
gi|307637352|gb|ADN79802.1| Ribonuclease III [Helicobacter pylori 908]
gi|325995944|gb|ADZ51349.1| Ribonuclease III [Helicobacter pylori 2018]
gi|325997538|gb|ADZ49746.1| Ribonuclease III [Helicobacter pylori 2017]
Length = 239
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 100
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYQALQKLKEAK 239
>gi|210134869|ref|YP_002301308.1| ribonuclease III [Helicobacter pylori P12]
gi|226741371|sp|B6JLQ0.1|RNC_HELP2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|210132837|gb|ACJ07828.1| ribonuclease III [Helicobacter pylori P12]
Length = 239
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYQALQKLKE 237
>gi|410963123|ref|XP_003988115.1| PREDICTED: double-stranded RNA-specific editase B2 [Felis catus]
Length = 729
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 87
SV KN L +L L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 117 SVAPKNALVQLHDLRP-GLQYRMVSQTGPVHAPVFAVAVEVNGLTFEGTG-PTKKKAKMR 174
Query: 88 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
AA++A + PN Q + D++S
Sbjct: 175 AAELALRSFVQFPNACQAQLAMGGGAGPSTDFTS 208
>gi|300869947|ref|YP_003784818.1| ribonuclease III [Brachyspira pilosicoli 95/1000]
gi|300687646|gb|ADK30317.1| ribonuclease III [Brachyspira pilosicoli 95/1000]
Length = 229
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
YK +LQE+ QK+ P Y + + E+ F V V + ++ KSKK+AE++AAK
Sbjct: 161 YKTILQEIVQKKYKITPTYKSYEYNENDNIMFKVEVYVKTKKYASGIGKSKKEAEINAAK 220
Query: 91 VA 92
A
Sbjct: 221 KA 222
>gi|420472249|ref|ZP_14970942.1| ribonuclease III [Helicobacter pylori Hp H-18]
gi|393089066|gb|EJB89707.1| ribonuclease III [Helicobacter pylori Hp H-18]
Length = 239
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYQALQKLKE 237
>gi|420468834|ref|ZP_14967563.1| ribonuclease III [Helicobacter pylori Hp H-10]
gi|393086245|gb|EJB86923.1| ribonuclease III [Helicobacter pylori Hp H-10]
Length = 239
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYQALQKLKE 237
>gi|420410198|ref|ZP_14909341.1| ribonuclease III [Helicobacter pylori NQ4200]
gi|420442141|ref|ZP_14941081.1| ribonuclease III [Helicobacter pylori Hp H-36]
gi|420477590|ref|ZP_14976245.1| ribonuclease III [Helicobacter pylori Hp H-23]
gi|393028511|gb|EJB29597.1| ribonuclease III [Helicobacter pylori NQ4200]
gi|393058631|gb|EJB59519.1| ribonuclease III [Helicobacter pylori Hp H-36]
gi|393092269|gb|EJB92890.1| ribonuclease III [Helicobacter pylori Hp H-23]
Length = 239
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYQALQKLKE 237
>gi|383482964|ref|YP_005391878.1| ribonuclease III [Rickettsia montanensis str. OSU 85-930]
gi|378935318|gb|AFC73819.1| ribonuclease III [Rickettsia montanensis str. OSU 85-930]
Length = 227
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 32 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
K LQE AQ + LP+Y K+ G SH+ TF V+V +G G + K+AE +AA+
Sbjct: 160 KTALQEWAQASDHHLPIYRLIKREGASHSSTFTVLVKVKDYEQTGTG-HAIKEAEKNAAR 218
Query: 91 VAYMRLK 97
RLK
Sbjct: 219 SLLHRLK 225
>gi|431806995|ref|YP_007233893.1| ribonuclease III [Brachyspira pilosicoli P43/6/78]
gi|430780354|gb|AGA65638.1| ribonuclease III [Brachyspira pilosicoli P43/6/78]
Length = 229
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
YK +LQE+ QK+ P Y + + E+ F V V + ++ KSKK+AE++AAK
Sbjct: 161 YKTILQEIVQKKYKITPTYKSYEYNENDNIMFKVEVYVKTKKYASGIGKSKKEAEINAAK 220
Query: 91 VA 92
A
Sbjct: 221 KA 222
>gi|385218925|ref|YP_005780400.1| ribonuclease III [Helicobacter pylori Gambia94/24]
gi|317014083|gb|ADU81519.1| ribonuclease III [Helicobacter pylori Gambia94/24]
Length = 239
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYQALQKLKE 237
>gi|420438689|ref|ZP_14937663.1| ribonuclease III [Helicobacter pylori Hp H-29]
gi|393056289|gb|EJB57201.1| ribonuclease III [Helicobacter pylori Hp H-29]
Length = 239
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYQALQKLKE 237
>gi|156373860|ref|XP_001629528.1| predicted protein [Nematostella vectensis]
gi|156216530|gb|EDO37465.1| predicted protein [Nematostella vectensis]
Length = 949
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGES---HAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 87
+K++LQE QK P Y T Q + + FVS V G+ F+G +K AE
Sbjct: 20 FKSLLQEYCQKMKIDYPSYRTSQCDDGTSKYLGHFVSNVLAVGQNFTGGYCSKRKAAEQD 79
Query: 88 AAKVAYMRLKEPNPSQGPALVS--PDIQAQADYSSSSLQSNV 127
AAK A +++ L+S P Q A YS+ S+ +N
Sbjct: 80 AAKQALKNIQQ-------TLISSTPSSQNIATYSNPSIITNT 114
Score = 37.0 bits (84), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 31 YKNVLQELAQKEAYALPVY--NTKQSGESHAPTFVSTVEVGGEVFSGQGAKS-KKQAEMS 87
YKN+LQE AQ A LP Y +T SG F++ V G + + A S KK AE +
Sbjct: 141 YKNILQEFAQGSAKLLPSYTVDTTNSG------FIAEVNFEGVRYKSKIAHSTKKAAEQN 194
Query: 88 AAKVAYMRL 96
AA+ A L
Sbjct: 195 AAESALQAL 203
>gi|420450320|ref|ZP_14949182.1| ribonuclease III [Helicobacter pylori Hp H-45]
gi|393067465|gb|EJB68275.1| ribonuclease III [Helicobacter pylori Hp H-45]
Length = 239
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYQALQKLKE 237
>gi|420448680|ref|ZP_14947560.1| ribonuclease III [Helicobacter pylori Hp H-44]
gi|420499772|ref|ZP_14998326.1| ribonuclease III [Helicobacter pylori Hp P-26]
gi|393066034|gb|EJB66862.1| ribonuclease III [Helicobacter pylori Hp H-44]
gi|393149752|gb|EJC50061.1| ribonuclease III [Helicobacter pylori Hp P-26]
Length = 239
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYQALQKLKE 237
>gi|420423650|ref|ZP_14922721.1| ribonuclease III [Helicobacter pylori Hp A-4]
gi|420428661|ref|ZP_14927696.1| ribonuclease III [Helicobacter pylori Hp A-17]
gi|420531153|ref|ZP_15029528.1| ribonuclease III [Helicobacter pylori Hp P-28b]
gi|393041372|gb|EJB42388.1| ribonuclease III [Helicobacter pylori Hp A-4]
gi|393046320|gb|EJB47300.1| ribonuclease III [Helicobacter pylori Hp A-17]
gi|393139179|gb|EJC39560.1| ribonuclease III [Helicobacter pylori Hp P-28b]
Length = 239
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYQALQKLKE 237
>gi|359420982|ref|ZP_09212913.1| ribonuclease III [Gordonia araii NBRC 100433]
gi|358243255|dbj|GAB10982.1| ribonuclease III [Gordonia araii NBRC 100433]
Length = 243
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL+ + P Y +G H F +T VGGE +SKK+AE AA+
Sbjct: 164 WKTSLQELSAARSLGPPAYLISSTGPDHDKEFTATAVVGGEELGTGIGRSKKEAEQVAAQ 223
Query: 91 VAYMRL 96
A+ L
Sbjct: 224 EAWRAL 229
>gi|34580889|ref|ZP_00142369.1| ribonuclease III [Rickettsia sibirica 246]
gi|157828029|ref|YP_001494271.1| ribonuclease III [Rickettsia rickettsii str. 'Sheila Smith']
gi|165932727|ref|YP_001649516.1| ribonuclease III [Rickettsia rickettsii str. Iowa]
gi|229586355|ref|YP_002844856.1| ribonuclease III [Rickettsia africae ESF-5]
gi|374318897|ref|YP_005065395.1| Ribonuclease III [Rickettsia slovaca 13-B]
gi|378720829|ref|YP_005285716.1| ribonuclease III [Rickettsia rickettsii str. Colombia]
gi|378722183|ref|YP_005287069.1| ribonuclease III [Rickettsia rickettsii str. Arizona]
gi|378723541|ref|YP_005288425.1| ribonuclease III [Rickettsia rickettsii str. Hauke]
gi|379016909|ref|YP_005293144.1| ribonuclease III [Rickettsia rickettsii str. Brazil]
gi|379017329|ref|YP_005293563.1| ribonuclease III [Rickettsia rickettsii str. Hino]
gi|379018660|ref|YP_005294894.1| ribonuclease III [Rickettsia rickettsii str. Hlp#2]
gi|379711897|ref|YP_005300236.1| ribonuclease III [Rickettsia philipii str. 364D]
gi|383312125|ref|YP_005364926.1| ribonuclease III [Candidatus Rickettsia amblyommii str. GAT-30V]
gi|383750794|ref|YP_005425895.1| ribonuclease III [Rickettsia slovaca str. D-CWPP]
gi|166991034|sp|A8GQT8.1|RNC_RICRS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|189043343|sp|B0BW84.1|RNC_RICRO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|259646551|sp|C3PMF3.1|RNC_RICAE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|28262274|gb|EAA25778.1| ribonuclease III [Rickettsia sibirica 246]
gi|157800510|gb|ABV75763.1| ribonuclease III [Rickettsia rickettsii str. 'Sheila Smith']
gi|165907814|gb|ABY72110.1| ribonuclease III [Rickettsia rickettsii str. Iowa]
gi|228021405|gb|ACP53113.1| Ribonuclease III [Rickettsia africae ESF-5]
gi|360041445|gb|AEV91827.1| Ribonuclease III [Rickettsia slovaca 13-B]
gi|376325433|gb|AFB22673.1| ribonuclease III [Rickettsia rickettsii str. Brazil]
gi|376325853|gb|AFB23092.1| ribonuclease III [Rickettsia rickettsii str. Colombia]
gi|376327207|gb|AFB24445.1| ribonuclease III [Rickettsia rickettsii str. Arizona]
gi|376328542|gb|AFB25779.1| ribonuclease III [Rickettsia philipii str. 364D]
gi|376329894|gb|AFB27130.1| ribonuclease III [Rickettsia rickettsii str. Hino]
gi|376331240|gb|AFB28474.1| ribonuclease III [Rickettsia rickettsii str. Hlp#2]
gi|376332556|gb|AFB29789.1| ribonuclease III [Rickettsia rickettsii str. Hauke]
gi|378930785|gb|AFC69294.1| ribonuclease III [Candidatus Rickettsia amblyommii str. GAT-30V]
gi|379773808|gb|AFD19164.1| ribonuclease III [Rickettsia slovaca str. D-CWPP]
Length = 227
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 32 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
K LQE AQ + LP+Y K+ G SH+ TF V+V +G G + K+AE +AA+
Sbjct: 160 KTALQEWAQASDHHLPIYRLIKREGASHSSTFTVLVKVKDYEQTGTG-HAIKEAEKNAAR 218
Query: 91 VAYMRLK 97
RLK
Sbjct: 219 SLLHRLK 225
>gi|420453494|ref|ZP_14952331.1| ribonuclease III [Helicobacter pylori Hp A-8]
gi|393069982|gb|EJB70775.1| ribonuclease III [Helicobacter pylori Hp A-8]
Length = 239
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYQALQKLKE 237
>gi|306836417|ref|ZP_07469394.1| ribonuclease III [Corynebacterium accolens ATCC 49726]
gi|304567698|gb|EFM43286.1| ribonuclease III [Corynebacterium accolens ATCC 49726]
Length = 256
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGG-EVFSGQGAKSKKQAEMSAA 89
+K LQEL + +PVY+ +G H TF + V G V +GQG +KK AE AA
Sbjct: 176 WKTTLQELCAELKAPMPVYSATATGPEHDQTFSAVATVAGLSVGNGQG-HNKKLAEQQAA 234
Query: 90 KVAYMRLKE-PNPSQGPA 106
+ A L+E P QG A
Sbjct: 235 QEACQTLRETPLLVQGTA 252
>gi|444909584|ref|ZP_21229775.1| Ribonuclease III [Cystobacter fuscus DSM 2262]
gi|444720533|gb|ELW61317.1| Ribonuclease III [Cystobacter fuscus DSM 2262]
Length = 255
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK LQE AQ++ P Y ++G H F V +G +V++ +SKK+AE +AA
Sbjct: 166 YKTKLQETAQEQLKVTPRYQCISEAGPDHEKVFEVQVSLGPDVYARATGRSKKEAEQNAA 225
Query: 90 KVA---YMRLKEPNPSQGPALVSP 110
A R ++P P P P
Sbjct: 226 HAALKWLARGEKPEPPDSPTDSGP 249
>gi|411120253|ref|ZP_11392629.1| ribonuclease III [Oscillatoriales cyanobacterium JSC-12]
gi|410710409|gb|EKQ67920.1| ribonuclease III [Oscillatoriales cyanobacterium JSC-12]
Length = 225
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 28 SVLYKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQ-AE 85
++ YK+ QE AQ P Y +SG HA T+V+ V V G+ F G+G KKQ AE
Sbjct: 153 AINYKSRFQEWAQANHRENPTYAIAHESGPDHAKTYVTEVFVNGK-FYGRGTGRKKQDAE 211
Query: 86 MSAAKVAYMRL 96
AA+ A RL
Sbjct: 212 KDAARDALDRL 222
>gi|420408798|ref|ZP_14907953.1| ribonuclease III [Helicobacter pylori NQ4216]
gi|393022960|gb|EJB24075.1| ribonuclease III [Helicobacter pylori NQ4216]
Length = 239
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYQALQKLKE 237
>gi|420425347|ref|ZP_14924408.1| ribonuclease III [Helicobacter pylori Hp A-5]
gi|420433932|ref|ZP_14932937.1| ribonuclease III [Helicobacter pylori Hp H-24]
gi|420445290|ref|ZP_14944204.1| ribonuclease III [Helicobacter pylori Hp H-42]
gi|420464115|ref|ZP_14962890.1| ribonuclease III [Helicobacter pylori Hp H-4]
gi|420475504|ref|ZP_14974175.1| ribonuclease III [Helicobacter pylori Hp H-21]
gi|420479230|ref|ZP_14977879.1| ribonuclease III [Helicobacter pylori Hp H-34]
gi|420485692|ref|ZP_14984310.1| ribonuclease III [Helicobacter pylori Hp P-4]
gi|420507696|ref|ZP_15006205.1| ribonuclease III [Helicobacter pylori Hp H-24b]
gi|420509278|ref|ZP_15007780.1| ribonuclease III [Helicobacter pylori Hp H-24c]
gi|420516188|ref|ZP_15014651.1| ribonuclease III [Helicobacter pylori Hp P-4c]
gi|420517890|ref|ZP_15016344.1| ribonuclease III [Helicobacter pylori Hp P-4d]
gi|420533113|ref|ZP_15031474.1| ribonuclease III [Helicobacter pylori Hp M1]
gi|420534689|ref|ZP_15033037.1| ribonuclease III [Helicobacter pylori Hp M2]
gi|420536401|ref|ZP_15034743.1| ribonuclease III [Helicobacter pylori Hp M3]
gi|420538104|ref|ZP_15036434.1| ribonuclease III [Helicobacter pylori Hp M4]
gi|420539927|ref|ZP_15038244.1| ribonuclease III [Helicobacter pylori Hp M5]
gi|420541590|ref|ZP_15039898.1| ribonuclease III [Helicobacter pylori Hp M6]
gi|420543109|ref|ZP_15041403.1| ribonuclease III [Helicobacter pylori Hp M9]
gi|393041765|gb|EJB42779.1| ribonuclease III [Helicobacter pylori Hp A-5]
gi|393050347|gb|EJB51307.1| ribonuclease III [Helicobacter pylori Hp H-24]
gi|393063484|gb|EJB64331.1| ribonuclease III [Helicobacter pylori Hp H-42]
gi|393078557|gb|EJB79297.1| ribonuclease III [Helicobacter pylori Hp H-4]
gi|393093611|gb|EJB94228.1| ribonuclease III [Helicobacter pylori Hp H-21]
gi|393095472|gb|EJB96076.1| ribonuclease III [Helicobacter pylori Hp H-34]
gi|393103827|gb|EJC04390.1| ribonuclease III [Helicobacter pylori Hp P-4]
gi|393117549|gb|EJC18050.1| ribonuclease III [Helicobacter pylori Hp H-24b]
gi|393120704|gb|EJC21193.1| ribonuclease III [Helicobacter pylori Hp H-24c]
gi|393123389|gb|EJC23858.1| ribonuclease III [Helicobacter pylori Hp P-4d]
gi|393124487|gb|EJC24955.1| ribonuclease III [Helicobacter pylori Hp P-4c]
gi|393137574|gb|EJC37957.1| ribonuclease III [Helicobacter pylori Hp M1]
gi|393141329|gb|EJC41694.1| ribonuclease III [Helicobacter pylori Hp M2]
gi|393144049|gb|EJC44393.1| ribonuclease III [Helicobacter pylori Hp M3]
gi|393145659|gb|EJC45990.1| ribonuclease III [Helicobacter pylori Hp M4]
gi|393146144|gb|EJC46473.1| ribonuclease III [Helicobacter pylori Hp M5]
gi|393148210|gb|EJC48534.1| ribonuclease III [Helicobacter pylori Hp M6]
gi|393159692|gb|EJC59942.1| ribonuclease III [Helicobacter pylori Hp M9]
Length = 239
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYQALQKLKE 237
>gi|427412473|ref|ZP_18902665.1| ribonuclease III [Veillonella ratti ACS-216-V-Col6b]
gi|425716280|gb|EKU79264.1| ribonuclease III [Veillonella ratti ACS-216-V-Col6b]
Length = 253
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK +LQE Q+E VY +SG H F V + G+ + KSKK+AE +AA
Sbjct: 176 YKTMLQEYVQQEGEKQIVYTLLSESGPDHDKIFCMEVRIEGKAYGSGTGKSKKEAEQNAA 235
Query: 90 KV 91
+V
Sbjct: 236 QV 237
>gi|420502804|ref|ZP_15001340.1| ribonuclease III [Helicobacter pylori Hp P-41]
gi|393150676|gb|EJC50981.1| ribonuclease III [Helicobacter pylori Hp P-41]
Length = 239
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYQALQKLKE 237
>gi|420480697|ref|ZP_14979340.1| ribonuclease III [Helicobacter pylori Hp P-1]
gi|420511195|ref|ZP_15009682.1| ribonuclease III [Helicobacter pylori Hp P-1b]
gi|393096713|gb|EJB97310.1| ribonuclease III [Helicobacter pylori Hp P-1]
gi|393119679|gb|EJC20169.1| ribonuclease III [Helicobacter pylori Hp P-1b]
Length = 239
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYQALQKLKE 237
>gi|254418789|ref|ZP_05032513.1| ribonuclease III [Brevundimonas sp. BAL3]
gi|196184966|gb|EDX79942.1| ribonuclease III [Brevundimonas sp. BAL3]
Length = 236
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 32 KNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGG-EVFSGQGAKSKKQAEMSAA 89
K+ LQE AQ + LP Y ++G HAPTF V V G E + QG +S+++AE +AA
Sbjct: 168 KSALQEWAQAKGRPLPTYRVADRTGSDHAPTFTIEVSVEGVEPLTAQG-RSRQEAEKAAA 226
Query: 90 KVAYMR 95
R
Sbjct: 227 TALLKR 232
>gi|317968415|ref|ZP_07969805.1| putative ribonuclease III [Synechococcus sp. CB0205]
Length = 236
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAP--TFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
+K+ LQE +Q + LP Y ++ + HA F V +G +S++QAE A
Sbjct: 163 WKSALQEWSQGQKRGLPDYRCEEVSQVHADPRRFHCQVSLGKTTLGEGWGRSRRQAEQEA 222
Query: 89 AKVAYMRLKEPNPSQG 104
A+V+ +L+ P+QG
Sbjct: 223 ARVSLEKLR---PAQG 235
>gi|157964181|ref|YP_001499005.1| ribonuclease III [Rickettsia massiliae MTU5]
gi|189043342|sp|A8F0M2.1|RNC_RICM5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|157843957|gb|ABV84458.1| Ribonuclease III [Rickettsia massiliae MTU5]
Length = 227
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 32 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
K LQE AQ + LP+Y K+ G SH+ TF V+V +G G + K+AE +AA+
Sbjct: 160 KTALQEWAQASDHHLPIYRLIKREGASHSSTFTVLVKVKDYEQTGTG-HAIKEAEKNAAR 218
Query: 91 VAYMRLK 97
RLK
Sbjct: 219 SLLHRLK 225
>gi|420506499|ref|ZP_15005014.1| ribonuclease III [Helicobacter pylori Hp P-74]
gi|393116004|gb|EJC16514.1| ribonuclease III [Helicobacter pylori Hp P-74]
Length = 239
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYQALQKLKE 237
>gi|420462032|ref|ZP_14960818.1| ribonuclease III [Helicobacter pylori Hp H-3]
gi|393079767|gb|EJB80498.1| ribonuclease III [Helicobacter pylori Hp H-3]
Length = 239
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYQALQKLKE 237
>gi|420419921|ref|ZP_14919008.1| ribonuclease III [Helicobacter pylori NQ4161]
gi|393037157|gb|EJB38193.1| ribonuclease III [Helicobacter pylori NQ4161]
Length = 239
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 100
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYQALQKLKEAK 239
>gi|386755684|ref|YP_006228901.1| ribonuclease III [Helicobacter pylori PeCan18]
gi|384561942|gb|AFI02408.1| ribonuclease III [Helicobacter pylori PeCan18]
Length = 239
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYQALQKLKE 237
>gi|420457000|ref|ZP_14955819.1| ribonuclease III [Helicobacter pylori Hp A-16]
gi|393074398|gb|EJB75158.1| ribonuclease III [Helicobacter pylori Hp A-16]
Length = 239
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYQALQKLKE 237
>gi|420430452|ref|ZP_14929480.1| ribonuclease III [Helicobacter pylori Hp A-20]
gi|420440432|ref|ZP_14939388.1| ribonuclease III [Helicobacter pylori Hp H-30]
gi|420482233|ref|ZP_14980870.1| ribonuclease III [Helicobacter pylori Hp P-2]
gi|420512656|ref|ZP_15011139.1| ribonuclease III [Helicobacter pylori Hp P-2b]
gi|393047149|gb|EJB48124.1| ribonuclease III [Helicobacter pylori Hp A-20]
gi|393056659|gb|EJB57570.1| ribonuclease III [Helicobacter pylori Hp H-30]
gi|393099467|gb|EJC00049.1| ribonuclease III [Helicobacter pylori Hp P-2]
gi|393157719|gb|EJC57980.1| ribonuclease III [Helicobacter pylori Hp P-2b]
Length = 239
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYQALQKLKE 237
>gi|379713230|ref|YP_005301568.1| ribonuclease III [Rickettsia massiliae str. AZT80]
gi|376333876|gb|AFB31108.1| ribonuclease III [Rickettsia massiliae str. AZT80]
Length = 227
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 32 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
K LQE AQ + LP+Y K+ G SH+ TF V+V +G G + K+AE +AA+
Sbjct: 160 KTALQEWAQASDHHLPIYRLIKREGASHSSTFTVLVKVKDYEQTGTG-HAIKEAEKNAAR 218
Query: 91 VAYMRLK 97
RLK
Sbjct: 219 SLLHRLK 225
>gi|383483498|ref|YP_005392411.1| ribonuclease III [Rickettsia parkeri str. Portsmouth]
gi|378935852|gb|AFC74352.1| ribonuclease III [Rickettsia parkeri str. Portsmouth]
Length = 227
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 32 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
K LQE AQ + LP+Y K+ G SH+ TF V+V +G G + K+AE +AA+
Sbjct: 160 KTALQEWAQASDHHLPIYRLIKREGASHSSTFTVLVKVKDYEQTGTG-HAIKEAEKNAAR 218
Query: 91 VAYMRLK 97
RLK
Sbjct: 219 SLLHRLK 225
>gi|383481096|ref|YP_005390011.1| ribonuclease III [Rickettsia rhipicephali str. 3-7-female6-CWPP]
gi|378933435|gb|AFC71938.1| ribonuclease III [Rickettsia rhipicephali str. 3-7-female6-CWPP]
Length = 227
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 32 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
K LQE AQ + LP+Y K+ G SH+ TF V+V +G G + K+AE +AA+
Sbjct: 160 KTALQEWAQASDHHLPIYRLIKREGASHSSTFTVLVKVKDYEQTGTG-HAIKEAEKNAAR 218
Query: 91 VAYMRLK 97
RLK
Sbjct: 219 SLLHRLK 225
>gi|296273889|ref|YP_003656520.1| ribonuclease III [Arcobacter nitrofigilis DSM 7299]
gi|296098063|gb|ADG94013.1| ribonuclease III [Arcobacter nitrofigilis DSM 7299]
Length = 223
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 8 LLRSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQS-GESHAPTFVSTV 66
L +S + L ++F++ YK LQE+ Q E ++P Y + S G H F ++
Sbjct: 139 LEKSYDKINLDVLFSD-------YKTALQEITQAEFGSIPDYKIEGSYGPDHKKEFEVSI 191
Query: 67 EVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 97
+ + + KSKK A+ + AK+A +LK
Sbjct: 192 WINNQCYGQAIGKSKKLAQQAVAKIALDKLK 222
>gi|253699690|ref|YP_003020879.1| ribonuclease III [Geobacter sp. M21]
gi|251774540|gb|ACT17121.1| ribonuclease III [Geobacter sp. M21]
Length = 232
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 32 KNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
K LQE A+ LP Y K+ SG H F V +G E+ KSKK+AE AA+
Sbjct: 163 KTELQEKARLVKGELPRYQLKEVSGPDHDKRFTVEVYLGEELMGEGVGKSKKEAEQDAAR 222
Query: 91 VAYMRLK 97
A++ LK
Sbjct: 223 AAFLLLK 229
>gi|227488592|ref|ZP_03918908.1| ribonuclease III [Corynebacterium glucuronolyticum ATCC 51867]
gi|227091486|gb|EEI26798.1| ribonuclease III [Corynebacterium glucuronolyticum ATCC 51867]
Length = 250
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 1 MLEKQIELLRSMQRSQLSMMFTNQEDDSVL--YKNVLQELAQKEAYALPVYNTKQSGESH 58
LE E R + + DS+ +K +LQE A + +P Y +G H
Sbjct: 144 FLEHGFEAARHTILTLFHEKIVHASSDSIHTDWKTLLQERAAERKLPMPEYEASFTGPDH 203
Query: 59 APTFVSTVEVGGEVF-SGQGAKSKKQAEMSAAKVAYMRLKEPNPSQ 103
F +T + G+V +GQG +KK AE AAK A L+E N ++
Sbjct: 204 DRFFTATAIIDGKVVGTGQG-HNKKAAEQLAAKQAVTVLREQNIAR 248
>gi|449497595|ref|XP_004160445.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Cucumis
sativus]
Length = 1231
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 32 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 91
KN LQ L + + P YNTKQ + F STV G F GQ SKK AE AA
Sbjct: 1118 KNQLQTLLLRAGHETPTYNTKQLRNNQ---FRSTVIFNGLNFVGQPCGSKKLAEKDAAAE 1174
Query: 92 AYMRLKEPNPSQGPAL 107
A + L+ S A+
Sbjct: 1175 ALLWLQGETHSSSQAI 1190
>gi|389866045|ref|YP_006368286.1| ribonuclease 3 [Modestobacter marinus]
gi|388488249|emb|CCH89822.1| Ribonuclease 3 [Modestobacter marinus]
Length = 242
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL + PVY+ + +G HA TF + V + G++ ++KK AE AA+
Sbjct: 166 WKTSLQELGAGQGLGAPVYDVEDTGPDHAKTFTAVVSLAGQIRGKGTGRTKKAAEQEAAE 225
Query: 91 VAYMRLKEPNPSQGPA 106
VA+ L GPA
Sbjct: 226 VAWRSLTSATDG-GPA 240
>gi|227503342|ref|ZP_03933391.1| ribonuclease III [Corynebacterium accolens ATCC 49725]
gi|227075845|gb|EEI13808.1| ribonuclease III [Corynebacterium accolens ATCC 49725]
Length = 256
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGG-EVFSGQGAKSKKQAEMSAA 89
+K LQEL + +PVY+ +G H TF + V G V +GQG +KK AE AA
Sbjct: 176 WKTTLQELCAELKAPMPVYSATATGPEHDQTFSAVATVAGLTVGNGQG-HNKKLAEQQAA 234
Query: 90 KVAYMRLKE-PNPSQGPA 106
+ A L+E P QG A
Sbjct: 235 QEACQTLRETPLLVQGTA 252
>gi|421721305|ref|ZP_16160581.1| ribonuclease III [Helicobacter pylori R055a]
gi|407225066|gb|EKE94839.1| ribonuclease III [Helicobacter pylori R055a]
Length = 239
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 100
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYHALQKLKEAK 239
>gi|77434241|gb|ABA82144.1| double-stranded RNA-binding protein, partial [Vaccinia virus]
gi|77434344|gb|ABA82147.1| double-stranded RNA-binding protein, partial [Vaccinia virus]
Length = 179
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 49 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 129 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 176
>gi|312869965|ref|ZP_07730104.1| ribonuclease III [Lactobacillus oris PB013-T2-3]
gi|417886270|ref|ZP_12530417.1| ribonuclease III [Lactobacillus oris F0423]
gi|311094550|gb|EFQ52855.1| ribonuclease III [Lactobacillus oris PB013-T2-3]
gi|341593768|gb|EGS36593.1| ribonuclease III [Lactobacillus oris F0423]
Length = 232
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFS-GQGAKSKKQ 83
D +V K LQE Q++ L Y+ ++SG + P F V G+V + GQG+ SKKQ
Sbjct: 157 DHAVDAKTSLQEFLQRDGDVLIEYHLLEESGTENNPAFHVDVAANGQVIADGQGS-SKKQ 215
Query: 84 AEMSAAKVAYMRLK 97
AEM AA+ A +L+
Sbjct: 216 AEMQAAQRALKKLR 229
>gi|227543196|ref|ZP_03973245.1| ribonuclease III [Corynebacterium glucuronolyticum ATCC 51866]
gi|227181005|gb|EEI61977.1| ribonuclease III [Corynebacterium glucuronolyticum ATCC 51866]
Length = 250
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 1 MLEKQIELLRSMQRSQLSMMFTNQEDDSVL--YKNVLQELAQKEAYALPVYNTKQSGESH 58
LE E R + + DS+ +K +LQE A + +P Y +G H
Sbjct: 144 FLEHGFETARHTILTLFHEKIVHASSDSIHTDWKTLLQERAAERKLPMPEYEASFTGPDH 203
Query: 59 APTFVSTVEVGGEVF-SGQGAKSKKQAEMSAAKVAYMRLKEPNPSQ 103
F +T + G+V +GQG +KK AE AAK A L+E N ++
Sbjct: 204 DRFFTATAIIDGKVVGTGQG-HNKKAAEQLAAKQAVTVLREQNIAR 248
>gi|450050469|ref|ZP_21840282.1| ribonuclease III [Streptococcus mutans NFSM1]
gi|449202561|gb|EMC03468.1| ribonuclease III [Streptococcus mutans NFSM1]
Length = 231
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK LQEL Q + L Y K+SG +HA F V + E S KSKK AE AA
Sbjct: 161 YKTALQELLQVDGDVLIDYEVLKESGPAHAKCFEVAVSMNYEKLSSGTGKSKKLAEQEAA 220
Query: 90 KVAYMRLK 97
K A +L+
Sbjct: 221 KNALEKLQ 228
>gi|420415037|ref|ZP_14914153.1| ribonuclease III [Helicobacter pylori NQ4053]
gi|393034004|gb|EJB35065.1| ribonuclease III [Helicobacter pylori NQ4053]
Length = 239
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPSYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 100
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYYALQKLKEAK 239
>gi|28277444|gb|AAH44344.1| Adar protein [Danio rerio]
Length = 917
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%)
Query: 34 VLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAY 93
VL E +Q+ + + T Q G SH P F+ V+VG +F A SKK A AA+ A
Sbjct: 747 VLMEHSQRSGHPIQFIKTGQEGPSHDPRFMFRVKVGERLFQEASAPSKKAARQLAAEEAV 806
Query: 94 MRL 96
L
Sbjct: 807 KEL 809
>gi|317018626|gb|ADU86891.1| E3L [Vaccinia virus]
Length = 179
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 49 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 129 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 176
>gi|114775465|ref|ZP_01451033.1| ribonuclease III [Mariprofundus ferrooxydans PV-1]
gi|114553576|gb|EAU55957.1| ribonuclease III [Mariprofundus ferrooxydans PV-1]
Length = 229
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 32 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 91
K+ LQEL Q + + LP Y G + P F +T V +V + KK AE++AA+
Sbjct: 162 KSRLQELTQGKGWGLPEYVLVDRGVGYQPRFEATCSVQEKVVGHGSGERKKLAEIAAAEQ 221
Query: 92 AYMRLKE 98
A+ +L +
Sbjct: 222 AWSKLTD 228
>gi|6969701|gb|AAF33913.1| TE3L [Vaccinia virus Tian Tan]
Length = 115
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 49 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 60 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 107
>gi|149031451|gb|EDL86441.1| adenosine deaminase, RNA-specific, B2 [Rattus norvegicus]
Length = 746
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 32 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 91
KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M AA++
Sbjct: 128 KNALVQLHELKP-GLQYRMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMRAAEM 185
Query: 92 AYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A + PN Q + D++S
Sbjct: 186 ALKSFVQFPNAFQAHLAMGSSTSPCTDFTS 215
>gi|18959240|ref|NP_579836.1| double-stranded RNA-specific editase B2 [Rattus norvegicus]
gi|33112433|sp|P97616.1|RED2_RAT RecName: Full=Double-stranded RNA-specific editase B2; AltName:
Full=RNA-dependent adenosine deaminase 3; AltName:
Full=RNA-editing deaminase 2; AltName: Full=RNA-editing
enzyme 2; AltName: Full=dsRNA adenosine deaminase B2
gi|1814270|gb|AAB41862.1| double-stranded RNA specific adenosine deaminase [Rattus
norvegicus]
Length = 746
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 32 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 91
KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M AA++
Sbjct: 128 KNALVQLHELKP-GLQYRMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMRAAEM 185
Query: 92 AYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A + PN Q + D++S
Sbjct: 186 ALKSFVQFPNAFQAHLAMGSSTSPCTDFTS 215
>gi|386748059|ref|YP_006221267.1| ribonuclease III [Helicobacter cetorum MIT 99-5656]
gi|384554301|gb|AFI06057.1| ribonuclease III [Helicobacter cetorum MIT 99-5656]
Length = 234
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+SG H F + +
Sbjct: 150 RAYKRLDLEYLFAD-------YKTALQELTQAKFGVIPKYELLKESGPDHHKEFEIALFI 202
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
+++ KSKK+AE A +LKE
Sbjct: 203 NNTIYAKAKGKSKKEAEQQCALQGLNKLKE 232
>gi|259503531|ref|ZP_05746433.1| ribonuclease III [Lactobacillus antri DSM 16041]
gi|259168609|gb|EEW53104.1| ribonuclease III [Lactobacillus antri DSM 16041]
Length = 232
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFS-GQGAKSKKQ 83
D +V K LQE Q++ L Y+ ++SG + P F V G+V + GQG+ SKKQ
Sbjct: 157 DHAVDAKTSLQEFLQRDGDVLIEYHLLEESGTENNPAFHVDVAADGQVIADGQGS-SKKQ 215
Query: 84 AEMSAAKVAYMRLK 97
AEM AA+ A +L+
Sbjct: 216 AEMQAAQRALKKLR 229
>gi|18640289|ref|NP_570445.1| CMLV055 [Camelpox virus]
gi|18482965|gb|AAL73762.1|AF438165_52 putative dsRNA-binding PKR inhibitor [Camelpox virus M-96]
gi|19717992|gb|AAG37517.1| CMP55L [Camelpox virus CMS]
Length = 190
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 49 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|449439551|ref|XP_004137549.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Cucumis
sativus]
Length = 1168
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 32 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 91
KN LQ L + + P YNTKQ + F STV G F GQ SKK AE AA
Sbjct: 1071 KNQLQTLLLRAGHETPTYNTKQLRNNQ---FRSTVIFNGLNFVGQPCGSKKLAEKDAAAE 1127
Query: 92 AYMRLKEPNPSQGPAL 107
A + L+ S A+
Sbjct: 1128 ALLWLQGETHSSSQAI 1143
>gi|417515465|gb|JAA53561.1| adenosine deaminase, RNA-specific [Sus scrofa]
Length = 1145
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 676 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 733
>gi|420431419|ref|ZP_14930438.1| ribonuclease III [Helicobacter pylori Hp H-16]
gi|393049012|gb|EJB49978.1| ribonuclease III [Helicobacter pylori Hp H-16]
Length = 239
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 100
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYQALQKLKEAK 239
>gi|167412541|gb|ABZ79975.1| double-stranded RNA binding protein [Vaccinia virus GLV-1h68]
Length = 190
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 49 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|17974965|ref|NP_536479.1| F3L [Monkeypox virus Zaire-96-I-16]
gi|17529832|gb|AAL40510.1|AF380138_52 F3L [Monkeypox virus Zaire-96-I-16]
gi|68448928|gb|AAY97050.1| double-stranded RNA binding protein [Monkeypox virus]
gi|68449129|gb|AAY97250.1| double-stranded RNA binding protein [Monkeypox virus]
gi|300872673|gb|ADK39075.1| double-stranded RNA binding protein [Monkeypox virus]
gi|323098461|gb|ADX22699.1| double-stranded RNA binding protein [Monkeypox virus]
gi|323098658|gb|ADX22895.1| double-stranded RNA binding protein [Monkeypox virus]
gi|451327734|gb|AGF36606.1| double-stranded RNA binding protein [Monkeypox virus]
gi|451327942|gb|AGF36813.1| double-stranded RNA binding protein [Monkeypox virus]
Length = 153
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 49 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 98 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 145
>gi|94483690|gb|ABF22807.1| double-stranded RNA binding protein [Variola virus]
gi|94485708|gb|ABF24815.1| double-stranded RNA binding protein [Variola virus]
gi|94487937|gb|ABF27033.1| double-stranded RNA binding protein [Variola virus]
Length = 192
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 49 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+ + G S++PTF + V++ G VF+ KSK+ A+ +AAK+A +L
Sbjct: 137 FRIESVGPSNSPTFYACVDIDGRVFNKADGKSKRDAKNNAAKLAVDKL 184
>gi|376261061|ref|YP_005147781.1| ribonuclease III [Clostridium sp. BNL1100]
gi|373945055|gb|AEY65976.1| ribonuclease III [Clostridium sp. BNL1100]
Length = 236
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 31 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSA 88
YK LQEL Q+ Y+ T Q G H TF++ V++ G GQG SKK+AE +A
Sbjct: 167 YKTQLQELVQQNGEQQISYSVTDQFGPDHNKTFITEVKINGAT-QGQGKGHSKKEAEQNA 225
Query: 89 AKVAYMRLK 97
AK A LK
Sbjct: 226 AKDALNNLK 234
>gi|325558443|gb|ADZ29822.1| double-stranded RNA binding protein [Cowpox virus]
gi|325558875|gb|ADZ30252.1| double-stranded RNA binding protein [Cowpox virus]
gi|325559087|gb|ADZ30463.1| double-stranded RNA binding protein [Cowpox virus]
Length = 190
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 49 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|325514074|gb|ADZ24068.1| double-stranded RNA binding protein [Cowpox virus]
Length = 189
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 49 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 134 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 181
>gi|313679612|ref|YP_004057351.1| double-stranded RNA binding domain-containing protein
[Oceanithermus profundus DSM 14977]
gi|313152327|gb|ADR36178.1| double-stranded RNA binding domain protein [Oceanithermus
profundus DSM 14977]
Length = 165
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 32 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSAAK 90
K+ L Q + LP + T+ +G P F+S V + GE+ +GQG +SK++AE AA+
Sbjct: 5 KSALNAYCQSKNLPLPKFETRGTGTEDDPLFISDVSLNGELLATGQG-RSKREAEKVAAE 63
Query: 91 VAYMRLK 97
+A L+
Sbjct: 64 LALELLR 70
>gi|251772101|gb|EES52671.1| Ribonuclease III [Leptospirillum ferrodiazotrophum]
Length = 254
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 31 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFS-GQGAKSKKQAEMSA 88
YK LQE Q+E LP Y T QSG H F V + + + GQG SKK+AE A
Sbjct: 169 YKTQLQEYCQRELETLPQYVITGQSGPDHQKVFEVAVRIRDKNWGEGQG-HSKKEAEQKA 227
Query: 89 AKVAYMRL 96
AK A R+
Sbjct: 228 AKSALERI 235
>gi|90660297|gb|ABD97411.1| double-stranded RNA binding protein [Cowpox virus]
gi|325558660|gb|ADZ30038.1| double-stranded RNA binding protein [Cowpox virus]
Length = 194
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 49 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 139 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 186
>gi|23238148|ref|NP_694466.1| Vp8 [Kadipiro virus]
gi|3850247|gb|AAC72049.1| Vp8 [Kadipiro virus]
Length = 302
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 32 KNVLQELAQKEAYALPVY-NTKQSGESHAPTFVSTVEVGG-EVFSGQGAKSKKQAEMSAA 89
K +LQEL K LPVY + G HAPT + G EV + A S+ QAE AA
Sbjct: 5 KGMLQELCVKRGLELPVYEKLSKVGPDHAPTITVKLTANGIEVI--EAASSRAQAEKLAA 62
Query: 90 KVAYMRLKE 98
Y ++K
Sbjct: 63 ATLYEKMKH 71
>gi|420437075|ref|ZP_14936059.1| ribonuclease III [Helicobacter pylori Hp H-28]
gi|393053389|gb|EJB54333.1| ribonuclease III [Helicobacter pylori Hp H-28]
Length = 239
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 100
++++ KSKK+AE A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYQVLQKLKEAK 239
>gi|311254196|ref|XP_003125793.1| PREDICTED: double-stranded RNA-specific adenosine deaminase,
partial [Sus scrofa]
Length = 1171
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 702 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 759
>gi|255570705|ref|XP_002526307.1| ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223534388|gb|EEF36096.1| ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 1172
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 32 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 91
K+ LQ L + YA P Y TKQ S F STVE G GQ +KK AE AA
Sbjct: 1085 KSQLQTLITRAGYAAPTYKTKQLKNSQ---FRSTVEFNGMQIMGQPCNNKKSAEKDAAAE 1141
Query: 92 AYMRLKEPNPSQGPALVS 109
A +R GP ++
Sbjct: 1142 A-LRWLMGETRTGPEYIN 1158
>gi|55140600|gb|AAV41839.1| putative double-stranded RNA binding protein [Cantagalo virus]
Length = 190
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 49 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|30519433|emb|CAD90608.1| F3L protein [Cowpox virus]
Length = 190
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 49 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|137621|sp|P21081.1|VE03_VACCC RecName: Full=Protein E3; AltName: Full=p25
gi|335388|gb|AAA48040.1| putative E3L [Vaccinia virus Copenhagen]
gi|373447483|gb|AEY72868.1| double-stranded RNA binding protein [Vaccinia virus]
Length = 190
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 49 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|373447962|gb|AEY73345.1| double-stranded RNA binding protein [Vaccinia virus]
Length = 190
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 49 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|334562985|ref|ZP_08515976.1| ribonuclease III [Corynebacterium bovis DSM 20582]
Length = 246
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 30/62 (48%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K VL E PVY T G +H TF +TV VG V +KK+AE AA+
Sbjct: 176 WKTVLLENLSGRHLGEPVYETAVEGPAHDQTFSATVTVGDRVMGSGTGHTKKEAEHHAAR 235
Query: 91 VA 92
A
Sbjct: 236 EA 237
>gi|2772689|gb|AAB96428.1| dsRNA dependent PK inhibitor [Vaccinia virus]
gi|38348925|gb|AAR17901.1| double-stranded RNA binding protein [Vaccinia virus]
gi|47088378|gb|AAT10448.1| double-stranded RNA binding protein [Vaccinia virus]
gi|90819719|gb|ABD98529.1| VACV-DUKE-067 [Vaccinia virus]
gi|160857941|emb|CAM58229.1| double-stranded RNA binding protein [Vaccinia virus Ankara]
gi|373447720|gb|AEY73104.1| double-stranded RNA binding protein [Vaccinia virus]
gi|373448675|gb|AEY74055.1| double-stranded RNA binding protein [Vaccinia virus]
gi|373449146|gb|AEY74524.1| double-stranded RNA binding protein [Vaccinia virus]
gi|373449387|gb|AEY74764.1| double-stranded RNA binding protein [Vaccinia virus]
Length = 190
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 49 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|119509571|ref|ZP_01628718.1| ribonuclease III [Nodularia spumigena CCY9414]
gi|119465760|gb|EAW46650.1| ribonuclease III [Nodularia spumigena CCY9414]
Length = 226
Score = 40.4 bits (93), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 32 KNVLQELAQ-KEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
KN QE Q K LP Y T++ G+ HAP +++ V VG +V+ A+ KK+AE AA
Sbjct: 154 KNRFQEWVQAKFGTLLPKYITERIGGQDHAPEYLAQVFVGEQVYGYGKARGKKEAEKQAA 213
Query: 90 KVA 92
+ A
Sbjct: 214 ENA 216
>gi|126178317|ref|YP_001046282.1| ribonuclease III [Methanoculleus marisnigri JR1]
gi|125861111|gb|ABN56300.1| RNAse III [Methanoculleus marisnigri JR1]
Length = 258
Score = 40.4 bits (93), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
Y+ LQE +E Y Q+G + P + + V VGG F A++K+ A M AAK
Sbjct: 190 YRGRLQEYVARENLGELEYAFLQTGPGNCPVWAARVTVGGIPFGEGEARTKQGAAMIAAK 249
Query: 91 VAYMRLK 97
A RL+
Sbjct: 250 EALARLR 256
>gi|385246973|gb|AFI49526.1| double-stranded RNA-binding protein [Buffalopox virus]
gi|385246975|gb|AFI49527.1| double-stranded RNA-binding protein [Buffalopox virus]
gi|385246977|gb|AFI49528.1| double-stranded RNA-binding protein [Buffalopox virus]
Length = 190
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 49 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|373448203|gb|AEY73585.1| double-stranded RNA binding protein [Vaccinia virus]
gi|373448434|gb|AEY73815.1| double-stranded RNA binding protein [Vaccinia virus]
gi|373448916|gb|AEY74295.1| double-stranded RNA binding protein [Vaccinia virus]
Length = 190
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 49 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|88854099|gb|ABD52517.1| double-stranded RNA-specific adenosine deaminase-like protein p25
[Vaccinia virus]
Length = 190
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 49 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|71059975|emb|CAJ18531.1| Adar [Mus musculus]
Length = 1152
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 680 LLEYARSHGFAAEFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAA 737
>gi|325557799|gb|ADZ29181.1| double-stranded RNA binding protein [Cowpox virus]
Length = 190
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 49 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|226371677|ref|NP_001139768.1| double-stranded RNA-specific adenosine deaminase isoform 3 [Mus
musculus]
gi|38372251|sp|Q99MU3.2|DSRAD_MOUSE RecName: Full=Double-stranded RNA-specific adenosine deaminase;
Short=DRADA; AltName: Full=RNA adenosine deaminase 1
gi|148683239|gb|EDL15186.1| adenosine deaminase, RNA-specific, isoform CRA_b [Mus musculus]
Length = 1178
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 680 LLEYARSHGFAAEFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAA 737
>gi|74140777|dbj|BAC40888.2| unnamed protein product [Mus musculus]
Length = 1173
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 680 LLEYARSHGFAAEFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAA 737
>gi|325558229|gb|ADZ29609.1| double-stranded RNA binding protein [Cowpox virus]
Length = 190
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 49 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|145301789|gb|ABP52434.1| double-stranded RNA-binding protein, partial [Vaccinia virus]
Length = 189
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 49 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 134 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 181
>gi|164508744|emb|CAM07147.1| double stranded RNA activated protein kinase 1 [Tetraodon
nigroviridis]
Length = 667
Score = 40.4 bits (93), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 64/133 (48%), Gaps = 15/133 (11%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
Y +++ E QK+ ++ + G SH P F + + G + K+ K+A +AA+
Sbjct: 228 YISLINEHCQKKGFSHSFVMVDRQGPSHGPQFYYQLSIDGHKYPVGEGKTAKEARQNAAQ 287
Query: 91 VAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTA------GRLVFN 144
+A+ L+ P+ S VS D+ A+A S+++ + + ++TA G
Sbjct: 288 LAWPVLQSPSCSG----VSGDVPAEASAPKSTIK-----NCENGLETAPVPVQEGVGFSK 338
Query: 145 PNSMPKVQAEEIR 157
P + PK Q+ +++
Sbjct: 339 PPATPKDQSSDVK 351
>gi|13236214|gb|AAK16102.1|AF291876_1 RNA adenosine deaminase 1 [Mus musculus]
Length = 1178
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 680 LLEYARSHGFAAEFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAA 737
>gi|27768964|gb|AAH42505.1| Adenosine deaminase, RNA-specific [Mus musculus]
Length = 1152
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 680 LLEYARSHGFAAEFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAA 737
>gi|226371679|ref|NP_062629.3| double-stranded RNA-specific adenosine deaminase isoform 1 [Mus
musculus]
gi|148683238|gb|EDL15185.1| adenosine deaminase, RNA-specific, isoform CRA_a [Mus musculus]
Length = 1152
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 680 LLEYARSHGFAAEFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAA 737
>gi|438962|gb|AAA60792.1| homolog of vaccinia virus CDS E3L (interferon resistance factor);
putative [Variola major virus]
gi|94483894|gb|ABF23010.1| double-stranded RNA binding protein [Variola virus]
gi|94484097|gb|ABF23212.1| double-stranded RNA binding protein [Variola virus]
gi|94484507|gb|ABF23620.1| double-stranded RNA binding protein [Variola virus]
gi|94484704|gb|ABF23816.1| double-stranded RNA binding protein [Variola virus]
gi|94484902|gb|ABF24013.1| double-stranded RNA binding protein [Variola virus]
gi|94485100|gb|ABF24210.1| double-stranded RNA binding protein [Variola virus]
gi|94485302|gb|ABF24411.1| double-stranded RNA binding protein [Variola virus]
gi|94485505|gb|ABF24613.1| double-stranded RNA binding protein [Variola virus]
gi|94485910|gb|ABF25016.1| double-stranded RNA binding protein [Variola virus]
gi|94486922|gb|ABF26023.1| double-stranded RNA binding protein [Variola virus]
gi|94487328|gb|ABF26427.1| double-stranded RNA binding protein [Variola virus]
gi|94487531|gb|ABF26629.1| double-stranded RNA binding protein [Variola virus]
gi|94487732|gb|ABF26829.1| double-stranded RNA binding protein [Variola virus]
gi|94488539|gb|ABF27632.1| double-stranded RNA binding protein [Variola virus]
gi|94488740|gb|ABF27832.1| double-stranded RNA binding protein [Variola virus]
gi|94488941|gb|ABF28032.1| double-stranded RNA binding protein [Variola virus]
gi|94489141|gb|ABF28231.1| double-stranded RNA binding protein [Variola virus]
gi|94489340|gb|ABF28429.1| double-stranded RNA binding protein [Variola virus]
gi|94489543|gb|ABF28631.1| double-stranded RNA binding protein [Variola virus]
gi|94489742|gb|ABF28829.1| double-stranded RNA binding protein [Variola virus]
gi|94489947|gb|ABF29033.1| double-stranded RNA binding protein [Variola virus]
gi|109724290|gb|ABG43415.1| double-stranded RNA binding protein [Variola virus]
gi|109724492|gb|ABG43616.1| double-stranded RNA binding protein [Variola virus]
gi|109724697|gb|ABG43820.1| double-stranded RNA binding protein [Variola virus]
gi|109724901|gb|ABG44023.1| double-stranded RNA binding protein [Variola virus]
gi|109726326|gb|ABG45441.1| double-stranded RNA binding protein [Variola virus]
Length = 192
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 49 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 137 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 184
>gi|56713422|gb|AAW23462.1| double-stranded RNA-specific adenosine [Vaccinia virus]
gi|56713706|gb|AAW23744.1| double-stranded RNA-specific adenosine [Vaccinia virus]
Length = 190
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 49 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|395845298|ref|XP_003795378.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
2 [Otolemur garnettii]
Length = 1136
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 667 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 724
>gi|355558514|gb|EHH15294.1| hypothetical protein EGK_01361 [Macaca mulatta]
Length = 1269
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 774 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 831
>gi|89053013|ref|YP_508464.1| ribonuclease III [Jannaschia sp. CCS1]
gi|122499604|sp|Q28V23.1|RNC_JANSC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|88862562|gb|ABD53439.1| RNAse III [Jannaschia sp. CCS1]
Length = 227
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 25 EDDSVLYKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVG-GEVFSGQGAKSKK 82
E+D+ K LQE AQ A P Y +SG HAP F V + GE Q AK+K+
Sbjct: 152 EEDARDAKTALQEWAQARGMAPPTYTEVARSGPDHAPVFRVRVTLSSGENAEAQ-AKAKR 210
Query: 83 QAEMSAAK 90
QAE AAK
Sbjct: 211 QAEQQAAK 218
>gi|9627565|ref|NP_042088.1| double-strand RNA-binding protein [Variola virus]
gi|465071|sp|P33863.1|VE03_VAR67 RecName: Full=Protein E3
gi|297225|emb|CAA48985.1| E3L [Variola virus]
gi|745160|prf||2015436AY E3L gene
Length = 190
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 49 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|384261139|ref|YP_005416325.1| RNAse III [Rhodospirillum photometricum DSM 122]
gi|378402239|emb|CCG07355.1| RNAse III [Rhodospirillum photometricum DSM 122]
Length = 252
Score = 40.4 bits (93), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 32 KNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
K LQE AQ LP Y+ + + G +H P F V V G SK+ AE +AA+
Sbjct: 182 KTALQEWAQGRGLPLPAYDEESREGPAHKPVFTVRVSVQGHGAEAASGPSKRIAEQAAAR 241
Query: 91 VAYMRL 96
RL
Sbjct: 242 CLLERL 247
>gi|344286449|ref|XP_003414970.1| PREDICTED: double-stranded RNA-specific adenosine deaminase
[Loxodonta africana]
Length = 1154
Score = 40.4 bits (93), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 685 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 742
>gi|37551503|gb|AAQ93155.1| double-stranded RNA binding protein [Vaccinia virus]
gi|373449628|gb|AEY75004.1| double-stranded RNA binding protein [Vaccinia virus]
Length = 190
Score = 40.4 bits (93), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 49 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|88900676|gb|ABD57588.1| VACV056 [Vaccinia virus]
Length = 190
Score = 40.4 bits (93), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 49 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|448825268|ref|YP_007418199.1| hypothetical protein LBA_00303 [Megavirus lba]
gi|444236453|gb|AGD92223.1| hypothetical protein LBA_00303 [Megavirus lba]
Length = 265
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 32 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTV--EVGGEVFSGQGAKSKKQAEMSAA 89
KN LQE QK +P+YN+ SG H + S++ + G+ F+ G+K+ +S
Sbjct: 24 KNKLQEYFQKNKLPIPIYNSTSSGPDHNKIWTSSIVATINGQEFTLVGSKNSNSKTISQQ 83
Query: 90 KVA 92
VA
Sbjct: 84 MVA 86
>gi|425701190|gb|AFX92352.1| hypothetical protein CE11_00322 [Megavirus courdo11]
Length = 246
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 32 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTV--EVGGEVFSGQGAKSKKQAEMSAA 89
KN LQE QK +P+YN+ SG H + S++ + G+ F+ G+K+ +S
Sbjct: 5 KNKLQEYFQKNKLPIPIYNSTSSGPDHNKIWTSSIVATINGQEFTLVGSKNSNSKTISQQ 64
Query: 90 KVA 92
VA
Sbjct: 65 MVA 67
>gi|149751348|ref|XP_001497601.1| PREDICTED: double-stranded RNA-specific adenosine deaminase [Equus
caballus]
Length = 1145
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 676 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 733
>gi|94486111|gb|ABF25216.1| double-stranded RNA binding protein [Variola virus]
gi|94486314|gb|ABF25418.1| double-stranded RNA binding protein [Variola virus]
gi|94486517|gb|ABF25620.1| double-stranded RNA binding protein [Variola virus]
gi|94486719|gb|ABF25821.1| double-stranded RNA binding protein [Variola virus]
gi|94487125|gb|ABF26225.1| double-stranded RNA binding protein [Variola virus]
gi|94490151|gb|ABF29236.1| double-stranded RNA binding protein [Variola virus]
gi|109724086|gb|ABG43212.1| double-stranded RNA binding protein [Variola virus]
gi|109725104|gb|ABG44225.1| double-stranded RNA binding protein [Variola virus]
gi|109725309|gb|ABG44429.1| double-stranded RNA binding protein [Variola virus]
gi|109725512|gb|ABG44631.1| double-stranded RNA binding protein [Variola virus]
gi|109725716|gb|ABG44834.1| double-stranded RNA binding protein [Variola virus]
gi|109725919|gb|ABG45036.1| double-stranded RNA binding protein [Variola virus]
gi|109726529|gb|ABG45643.1| double-stranded RNA binding protein [Variola virus]
Length = 190
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 49 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|544827|gb|AAB29618.1| E3L product [variola virus VAR, India-1967, Peptide, 190 aa]
Length = 190
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 49 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|395845300|ref|XP_003795379.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
3 [Otolemur garnettii]
Length = 1145
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 676 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 733
>gi|363540236|ref|YP_004894369.1| mg318 gene product [Megavirus chiliensis]
gi|350611401|gb|AEQ32845.1| hypothetical protein [Megavirus chiliensis]
Length = 246
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 32 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTV--EVGGEVFSGQGAKSKKQAEMSAA 89
KN LQE QK +P+YN+ SG H + S++ + G+ F+ G+K+ +S
Sbjct: 5 KNKLQEYFQKNKLPIPIYNSTSSGPDHNKIWTSSIVATINGQEFTLVGSKNSNSKTISQQ 64
Query: 90 KVA 92
VA
Sbjct: 65 MVA 67
>gi|226185035|dbj|BAH33139.1| probable ribonuclease III [Rhodococcus erythropolis PR4]
Length = 257
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL + +PVY +G H F +TV + + +SKK+AE AA
Sbjct: 173 WKTSLQELTAEHGAGVPVYEITATGPDHDKEFTATVLISDKPLGVGVGRSKKEAEQKAAS 232
Query: 91 VAYMRLKE 98
A+ + E
Sbjct: 233 SAWKTMSE 240
>gi|111184243|gb|ABH08163.1| HSPV060 [Horsepox virus]
Length = 190
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 49 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|94488139|gb|ABF27234.1| double-stranded RNA binding protein [Variola virus]
gi|94488339|gb|ABF27433.1| double-stranded RNA binding protein [Variola virus]
gi|109726123|gb|ABG45239.1| double-stranded RNA binding protein [Variola virus]
Length = 192
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 49 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 137 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 184
>gi|355745704|gb|EHH50329.1| hypothetical protein EGM_01140 [Macaca fascicularis]
Length = 1268
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 773 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 830
>gi|325558013|gb|ADZ29394.1| double-stranded RNA binding protein [Cowpox virus]
Length = 192
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 49 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 137 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 184
>gi|77434212|gb|ABA82143.1| double-stranded RNA-binding protein, partial [Vaccinia virus]
gi|77434276|gb|ABA82145.1| double-stranded RNA-binding protein, partial [Vaccinia virus]
gi|77434313|gb|ABA82146.1| double-stranded RNA-binding protein, partial [Vaccinia virus]
gi|77434422|gb|ABA82148.1| double-stranded RNA-binding protein, partial [Vaccinia virus]
gi|82408803|gb|ABB73195.1| double-stranded RNA-binding protein, partial [Vaccinia virus]
gi|317018624|gb|ADU86890.1| E3L [Vaccinia virus]
Length = 179
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 49 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 129 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 176
>gi|51342212|gb|AAU01256.1| MPXV-WRAIR046 [Monkeypox virus]
gi|58220516|gb|AAW67804.1| MPXV-SL-046 [Monkeypox virus]
gi|59858852|gb|AAX09147.1| MPXV-COP-046 [Monkeypox virus]
gi|68448726|gb|AAY96849.1| double-stranded RNA binding protein [Monkeypox virus]
gi|68449329|gb|AAY97449.1| double-stranded RNA binding protein [Monkeypox virus]
gi|68449528|gb|AAY97647.1| double-stranded RNA binding protein [Monkeypox virus]
Length = 153
Score = 40.4 bits (93), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 49 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 98 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 145
>gi|5830605|emb|CAB54644.1| C3L protein [Variola minor virus]
gi|94484303|gb|ABF23417.1| double-stranded RNA binding protein [Variola virus]
Length = 192
Score = 40.4 bits (93), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 49 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 137 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 184
>gi|406836554|ref|ZP_11096148.1| RNAse III [Schlesneria paludicola DSM 18645]
Length = 205
Score = 40.4 bits (93), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK++LQ+L QK P+Y + G H+ F VG + F +KK+AE AA
Sbjct: 122 YKSLLQQLVQKNQRGTPLYQLLDECGPDHSKCFKIAAVVGIDAFPPAWGPNKKEAEQRAA 181
Query: 90 KVAYMRLKEPNP 101
+ A+ L+ P
Sbjct: 182 ENAWCLLQGETP 193
>gi|395845296|ref|XP_003795377.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
1 [Otolemur garnettii]
Length = 1171
Score = 40.4 bits (93), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 676 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 733
>gi|402856394|ref|XP_003892775.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
2 [Papio anubis]
Length = 1200
Score = 40.4 bits (93), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 731 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 788
>gi|354478898|ref|XP_003501651.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
2 [Cricetulus griseus]
Length = 1148
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 676 LLEYARSHGFAAEFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAA 733
>gi|18858253|ref|NP_571671.1| double-stranded RNA-specific adenosine deaminase [Danio rerio]
gi|7770273|gb|AAF69672.1| double-stranded RNA-specific editase [Danio rerio]
Length = 1382
Score = 40.0 bits (92), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 33 NVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
+VL E +Q+ + + T Q G SH P F+ V+VG +F A SKK A AA+ A
Sbjct: 746 SVLMEHSQRSGHPIQFIKTGQEGPSHDPRFMFRVKVGERLFQEASAPSKKAARQLAAEEA 805
Query: 93 YMRL 96
L
Sbjct: 806 VKEL 809
>gi|403293613|ref|XP_003937807.1| PREDICTED: double-stranded RNA-specific adenosine deaminase
[Saimiri boliviensis boliviensis]
Length = 1182
Score = 40.0 bits (92), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 687 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 744
>gi|402856396|ref|XP_003892776.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
3 [Papio anubis]
Length = 1181
Score = 40.0 bits (92), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 712 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 769
>gi|373447244|gb|AEY72630.1| double-stranded RNA binding protein [Vaccinia virus]
Length = 190
Score = 40.0 bits (92), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 49 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|365845433|ref|ZP_09386204.1| ribonuclease III [Flavonifractor plautii ATCC 29863]
gi|373118094|ref|ZP_09532230.1| ribonuclease III [Lachnospiraceae bacterium 7_1_58FAA]
gi|364560272|gb|EHM38214.1| ribonuclease III [Flavonifractor plautii ATCC 29863]
gi|371667658|gb|EHO32777.1| ribonuclease III [Lachnospiraceae bacterium 7_1_58FAA]
Length = 225
Score = 40.0 bits (92), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 31 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSA 88
YK LQEL Q+E+ + Y G HA F V++ G + GQG +SKK+AE +A
Sbjct: 155 YKTALQELVQRESGQVLGYQLIGAEGPDHAKIFSVEVDLNG-IPIGQGRGRSKKEAEQNA 213
Query: 89 AKVAYMRLK 97
AK A +LK
Sbjct: 214 AKAAIEKLK 222
>gi|187918561|ref|YP_001884124.1| ribonuclease III [Borrelia hermsii DAH]
gi|119861409|gb|AAX17204.1| ribonuclease III [Borrelia hermsii DAH]
Length = 243
Score = 40.0 bits (92), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 31 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK++LQE QK+ P Y K+ G H F + V + S KSKK+AEM AA
Sbjct: 172 YKSLLQEYVQKKYKISPNYRLAKELGPDHNKIFCVELYVNDKFISNGKGKSKKEAEMIAA 231
Query: 90 KVA 92
++A
Sbjct: 232 EMA 234
>gi|44971411|gb|AAS49761.1| RPXV048 [Rabbitpox virus]
gi|439965905|gb|AGB75779.1| double-strand RNA-binding protein [Vaccinia virus]
Length = 190
Score = 40.0 bits (92), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 49 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|66275856|ref|YP_232941.1| double-stranded RNA binding protein [Vaccinia virus]
gi|137622|sp|P21605.1|VE03_VACCV RecName: Full=Protein E3; AltName: Full=p25
gi|335750|gb|AAB59823.1| ORF2 [Vaccinia virus]
gi|29692165|gb|AAO89338.1| double-stranded RNA binding protein [Vaccinia virus WR]
Length = 190
Score = 40.0 bits (92), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 49 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|453364526|dbj|GAC79803.1| ribonuclease III [Gordonia malaquae NBRC 108250]
Length = 242
Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL+ + P Y +G H F +T V G ++KK+AE +AA
Sbjct: 164 WKTSLQELSAERGTGQPHYQVTSTGPDHDKEFTATAVVAGRSLGEGVGRTKKEAEQNAAA 223
Query: 91 VAYMRLKEPNPSQG 104
+A+ L + +P+ G
Sbjct: 224 IAWREL-DGDPTVG 236
>gi|402856392|ref|XP_003892774.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
1 [Papio anubis]
Length = 1226
Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 731 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 788
>gi|67937802|gb|AAY83357.1| putative double-stranded RNA binding protein [Vaccinia virus]
Length = 190
Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 49 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|104642088|gb|ABF73314.1| double-stranded RNA-binding protein [Vaccinia virus]
Length = 189
Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 49 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 134 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 181
>gi|420455238|ref|ZP_14954068.1| ribonuclease III [Helicobacter pylori Hp A-14]
gi|393073588|gb|EJB74362.1| ribonuclease III [Helicobacter pylori Hp A-14]
Length = 239
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK LQEL Q + +P Y K+ G H F + + ++++ KSKK+AE A
Sbjct: 169 YKTALQELTQAQFCVIPSYQLLKEKGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCA 228
Query: 90 KVAYMRLKE 98
A +LKE
Sbjct: 229 YQALQKLKE 237
>gi|297280143|ref|XP_002801843.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like
isoform 2 [Macaca mulatta]
Length = 1225
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 730 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 787
>gi|296229005|ref|XP_002760091.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
3 [Callithrix jacchus]
Length = 1181
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 712 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 769
>gi|219968357|emb|CAO98758.1| double-stranded RNA activated protein kinase 1 [Tetraodon
nigroviridis]
Length = 667
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 64/133 (48%), Gaps = 15/133 (11%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
Y +++ E QK+ ++ + G SH P F + + G + K+ K+A +AA+
Sbjct: 228 YISLINEHCQKKGFSHSFVMVDRQGPSHGPQFYYQLSIDGHKYPVGEGKTAKEARQNAAQ 287
Query: 91 VAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTA------GRLVFN 144
+A+ L+ P+ S VS D+ A+A S+++ + + ++TA G
Sbjct: 288 LAWPVLQSPSCSG----VSGDVPAEASAPKSTIK-----NCENGLETAPVPVQEGVGFSK 338
Query: 145 PNSMPKVQAEEIR 157
P + PK Q+ +++
Sbjct: 339 PPATPKDQSSDVK 351
>gi|297280145|ref|XP_001111902.2| PREDICTED: double-stranded RNA-specific adenosine deaminase-like
isoform 1 [Macaca mulatta]
Length = 1199
Score = 40.0 bits (92), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 730 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 787
>gi|13591904|ref|NP_112268.1| double-stranded RNA-specific adenosine deaminase [Rattus
norvegicus]
gi|1706533|sp|P55266.1|DSRAD_RAT RecName: Full=Double-stranded RNA-specific adenosine deaminase;
Short=DRADA
gi|755817|gb|AAA65039.1| double-stranded RNA-specific adenosine deaminase [Rattus
norvegicus]
Length = 1175
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 677 LLEYARSHGFAAEFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAA 734
>gi|354478896|ref|XP_003501650.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
1 [Cricetulus griseus]
gi|344242007|gb|EGV98110.1| Double-stranded RNA-specific adenosine deaminase [Cricetulus
griseus]
Length = 1174
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 676 LLEYARSHGFAAEFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAA 733
>gi|149048041|gb|EDM00617.1| adenosine deaminase, RNA-specific, isoform CRA_b [Rattus
norvegicus]
Length = 1175
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 677 LLEYARSHGFAAEFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAA 734
>gi|2981097|gb|AAC06233.1| double-stranded RNA-specific adenosine deaminase [Mus musculus]
Length = 1152
Score = 40.0 bits (92), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 26/58 (44%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ AA A
Sbjct: 680 LLEYARSHGFAAEFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGRQDAADAA 737
>gi|384939262|gb|AFI33236.1| double-stranded RNA-specific adenosine deaminase isoform a [Macaca
mulatta]
Length = 1177
Score = 40.0 bits (92), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 682 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 739
>gi|417304879|ref|ZP_12091876.1| ribonuclease III [Rhodopirellula baltica WH47]
gi|327538797|gb|EGF25444.1| ribonuclease III [Rhodopirellula baltica WH47]
Length = 297
Score = 40.0 bits (92), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 31 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
+K+VLQ+ AQ+E A PVY +++G H F+ V F+ +KK AE AA
Sbjct: 217 HKSVLQQFAQRELSATPVYKLIRETGPDHRKMFLMGAMVDDRRFAPAWGNNKKDAEQRAA 276
Query: 90 KVAYMRL---KEPNPSQGP 105
A L K P S+ P
Sbjct: 277 ANALAELHNAKVPYDSEQP 295
>gi|297280147|ref|XP_002801844.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like
isoform 3 [Macaca mulatta]
Length = 1180
Score = 40.0 bits (92), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 711 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 768
>gi|296229003|ref|XP_002760090.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
2 [Callithrix jacchus]
Length = 1200
Score = 40.0 bits (92), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 731 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 788
>gi|359685221|ref|ZP_09255222.1| ribonuclease III [Leptospira santarosai str. 2000030832]
Length = 238
Score = 40.0 bits (92), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 31 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEV-FSGQGAKSKKQAEMSA 88
YK LQE +QK +LPVY K +SG H+ F +V + + SG GA SKK AE +A
Sbjct: 167 YKTQLQEYSQKHFKSLPVYRIKGESGPDHSKMFQVSVRIRDKWEASGYGA-SKKTAEQNA 225
Query: 89 AKVAYMRLKE 98
AK + ++++
Sbjct: 226 AKELFNQIRK 235
>gi|284048724|ref|YP_003399063.1| ribonuclease III [Acidaminococcus fermentans DSM 20731]
gi|283952945|gb|ADB47748.1| ribonuclease III [Acidaminococcus fermentans DSM 20731]
Length = 234
Score = 40.0 bits (92), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 31 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGG-EVFSGQGAKSKKQAEMSA 88
YK LQE+ QK+ A +Y+ G SH TFV V V G E+ G+G ++KK+AE A
Sbjct: 167 YKTRLQEVVQKDGPAEILYDQVSAEGPSHNRTFVMRVLVNGNELGKGRG-RTKKEAEQRA 225
Query: 89 AKVAYMRLK 97
A+ A L+
Sbjct: 226 AREALKALR 234
>gi|400554|gb|AAA02759.1| double-stranded RNA-binding protein [Vaccinia virus]
Length = 190
Score = 40.0 bits (92), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 49 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|395729746|ref|XP_002810146.2| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
5 [Pongo abelii]
Length = 1226
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 731 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 788
>gi|227504755|ref|ZP_03934804.1| ribonuclease III [Corynebacterium striatum ATCC 6940]
gi|227198605|gb|EEI78653.1| ribonuclease III [Corynebacterium striatum ATCC 6940]
Length = 256
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
Query: 14 RSQLSMMFTNQEDDSVL------YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVE 67
R + +F + D++V+ +K LQEL + +PVY +G H TF +
Sbjct: 153 RDVILRLFQKKIDNAVVSGRHMDWKTNLQELCAELKAPMPVYTATSTGPEHDQTFTAVAT 212
Query: 68 VGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE-PNPSQGPA 106
V G +KK AE AA+ A L+E P QG A
Sbjct: 213 VAGLTVGNGVGHNKKLAEQQAAQEACQTLRETPLLVQGTA 252
>gi|421614937|ref|ZP_16055976.1| ribonuclease III [Rhodopirellula baltica SH28]
gi|408494274|gb|EKJ98893.1| ribonuclease III [Rhodopirellula baltica SH28]
Length = 266
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 31 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
+K+VLQ+ AQ+E A PVY +++G H F+ V F+ +KK AE AA
Sbjct: 186 HKSVLQQFAQRELSATPVYKLIRETGPDHRKMFLMGAMVDDRRFAPAWGNNKKDAEQRAA 245
Query: 90 KVAYMRL---KEPNPSQGP 105
A L K P S+ P
Sbjct: 246 ANALAELHNAKVPYDSEQP 264
>gi|296229001|ref|XP_002760089.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
1 [Callithrix jacchus]
Length = 1226
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 731 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 788
>gi|194665306|ref|XP_581374.4| PREDICTED: double-stranded RNA-specific adenosine deaminase [Bos
taurus]
gi|297472608|ref|XP_002686059.1| PREDICTED: double-stranded RNA-specific adenosine deaminase [Bos
taurus]
gi|296489763|tpg|DAA31876.1| TPA: RNA adenosine deaminase-like [Bos taurus]
Length = 1149
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 680 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 737
>gi|31874703|emb|CAD98075.1| hypothetical protein [Homo sapiens]
Length = 1257
Score = 40.0 bits (92), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 762 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 819
>gi|88608789|ref|YP_506782.1| ribonuclease III [Neorickettsia sennetsu str. Miyayama]
gi|88600958|gb|ABD46426.1| ribonuclease III [Neorickettsia sennetsu str. Miyayama]
Length = 222
Score = 40.0 bits (92), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 32 KNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
K+ LQEL Q + P+YN +SG +H P F + V G+ G KSKK E +AA+
Sbjct: 153 KSTLQELLQAKGMKPPIYNVINRSGPAHLPIFEIEIRVDGKKRRATG-KSKKLGEENAAR 211
Query: 91 VAYMRLK 97
+ LK
Sbjct: 212 MMLEELK 218
>gi|440718234|ref|ZP_20898695.1| ribonuclease III [Rhodopirellula baltica SWK14]
gi|436436569|gb|ELP30300.1| ribonuclease III [Rhodopirellula baltica SWK14]
Length = 297
Score = 40.0 bits (92), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 31 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
+K+VLQ+ AQ+E A PVY +++G H F+ V F+ +KK AE AA
Sbjct: 217 HKSVLQQFAQRELSATPVYKLIRETGPDHRKMFLMGAMVDDRRFAPAWGNNKKDAEQRAA 276
Query: 90 KVAYMRL---KEPNPSQGP 105
A L K P S+ P
Sbjct: 277 ANALAELHNAKVPYDSEQP 295
>gi|332220545|ref|XP_003259416.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
3 [Nomascus leucogenys]
Length = 1234
Score = 40.0 bits (92), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 765 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 822
>gi|332220541|ref|XP_003259414.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
1 [Nomascus leucogenys]
Length = 1279
Score = 40.0 bits (92), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 784 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 841
>gi|301774246|ref|XP_002922574.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific
adenosine deaminase-like [Ailuropoda melanoleuca]
Length = 1144
Score = 40.0 bits (92), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 678 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 735
>gi|251781986|ref|YP_002996288.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
GGS_124]
gi|408401236|ref|YP_006859199.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
RE378]
gi|410494313|ref|YP_006904159.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
AC-2713]
gi|417752716|ref|ZP_12400893.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
SK1249]
gi|417928266|ref|ZP_12571654.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
SK1250]
gi|242390615|dbj|BAH81074.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
GGS_124]
gi|333771523|gb|EGL48458.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
SK1249]
gi|340766140|gb|EGR88666.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
SK1250]
gi|407967464|dbj|BAM60702.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
RE378]
gi|410439473|emb|CCI62101.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
AC-2713]
Length = 230
Score = 40.0 bits (92), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 31 YKNVLQELAQ-KEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK LQEL Q K A+ + G +HA F V V EV S KSKK AE AA
Sbjct: 161 YKTCLQELLQSKGDIAIDYQVISEKGPAHAKQFEVAVFVNEEVLSKGLGKSKKMAEQDAA 220
Query: 90 KVAYMRLKE 98
K A ++L E
Sbjct: 221 KNALVQLSE 229
>gi|421716750|ref|ZP_16156059.1| ribonuclease III [Helicobacter pylori R037c]
gi|407219971|gb|EKE89782.1| ribonuclease III [Helicobacter pylori R037c]
Length = 239
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 100
++++ KSKK+AE A +LKE
Sbjct: 208 QDKIYATAKGKSKKEAEQQCAYQVLQKLKEAK 239
>gi|383411201|gb|AFH28814.1| double-stranded RNA-specific adenosine deaminase isoform a [Macaca
mulatta]
Length = 1177
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 682 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 739
>gi|332220543|ref|XP_003259415.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
2 [Nomascus leucogenys]
Length = 1253
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 784 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 841
>gi|159905527|ref|YP_001549189.1| ribonuclease III [Methanococcus maripaludis C6]
gi|159887020|gb|ABX01957.1| Ribonuclease III [Methanococcus maripaludis C6]
Length = 229
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
YK LQE + ++ N +++GE H FV V+ ++ KSKK+AEM AAK
Sbjct: 159 YKTKLQEFPELINKSINYVNLEEAGEPHDKKFVVAVKQDRKILGKGIGKSKKEAEMKAAK 218
Query: 91 VAYMRL 96
A ++L
Sbjct: 219 NALLKL 224
>gi|32473407|ref|NP_866401.1| ribonuclease III [Rhodopirellula baltica SH 1]
gi|32398087|emb|CAD78182.1| ribonuclease III [Rhodopirellula baltica SH 1]
Length = 297
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 31 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
+K+VLQ+ AQ+E A PVY +++G H F+ V F+ +KK AE AA
Sbjct: 217 HKSVLQQFAQRELSATPVYKLIRETGPDHRKMFLMGAMVDDRRFAPAWGNNKKDAEQRAA 276
Query: 90 KVAYMRL---KEPNPSQGP 105
A L K P S+ P
Sbjct: 277 ANALAELHNAKVPYDSEQP 295
>gi|397492942|ref|XP_003817378.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific
adenosine deaminase [Pan paniscus]
Length = 1194
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 725 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 782
>gi|348579304|ref|XP_003475420.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific
adenosine deaminase-like [Cavia porcellus]
Length = 1137
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 665 LLEYARSHGFAAEFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 722
>gi|39997326|ref|NP_953277.1| ribonuclease III [Geobacter sulfurreducens PCA]
gi|409912670|ref|YP_006891135.1| ribonuclease III [Geobacter sulfurreducens KN400]
gi|81701827|sp|Q74AX1.1|RNC_GEOSL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|39984217|gb|AAR35604.1| ribonuclease III [Geobacter sulfurreducens PCA]
gi|298506263|gb|ADI84986.1| ribonuclease III [Geobacter sulfurreducens KN400]
Length = 248
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 31 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSA 88
+K QELAQ + LP Y SG +H F VG E GQG +SKK+AE +A
Sbjct: 173 FKTDFQELAQAQYGGLPRYVLVDTSGPAHDLRFTVAAYVG-ERLLGQGTGRSKKEAEQAA 231
Query: 89 AKVAYMRLKEPNPSQGP 105
A+ RL+ S P
Sbjct: 232 ARQCLERLETGRCSAAP 248
>gi|260578984|ref|ZP_05846886.1| ribonuclease III [Corynebacterium jeikeium ATCC 43734]
gi|258602849|gb|EEW16124.1| ribonuclease III [Corynebacterium jeikeium ATCC 43734]
Length = 244
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K VL E LP Y + G H TF +TV + V G+G +KK AE +AAK
Sbjct: 176 WKTVLLEKLSDMKLPLPTYEVRGEGPEHDKTFYATVTIEDLVTHGEG-HTKKVAEHAAAK 234
Query: 91 VAYMRLKE 98
A +L E
Sbjct: 235 QAVQKLNE 242
>gi|2326526|emb|CAA55968.1| IFI-4 [Homo sapiens]
Length = 1226
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 731 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 788
>gi|428209032|ref|YP_007093385.1| RNAse III [Chroococcidiopsis thermalis PCC 7203]
gi|428010953|gb|AFY89516.1| RNAse III [Chroococcidiopsis thermalis PCC 7203]
Length = 237
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAP--TFVSTVEVGGEVFSGQG-AKSKKQAEMS 87
YK LQE Q + LP Y ++S + H F + V + G + GQG +SKK AE +
Sbjct: 166 YKAALQEWTQAQFKILPEYRVRESLQPHGAFERFSAEVWLQGRLL-GQGTGRSKKDAEQA 224
Query: 88 AAKVAYM 94
AA+VA++
Sbjct: 225 AAQVAFI 231
>gi|269958484|ref|YP_003328271.1| ribonuclease 3 [Anaplasma centrale str. Israel]
gi|269848313|gb|ACZ48957.1| ribonuclease 3 [Anaplasma centrale str. Israel]
Length = 249
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 32 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGE-VFSGQGAKSKKQAEMSAA 89
K LQE Q + +P+Y +SG H P F V + G G G+ SKK AE AA
Sbjct: 167 KTALQEWVQSRGWTVPLYKLVSKSGPEHKPVFAVEVSIQGHGSILGTGS-SKKLAEQEAA 225
Query: 90 KVAYMRLKE 98
K+ R+ E
Sbjct: 226 KLMLKRITE 234
>gi|449133751|ref|ZP_21769275.1| ribonuclease III [Rhodopirellula europaea 6C]
gi|448887627|gb|EMB17992.1| ribonuclease III [Rhodopirellula europaea 6C]
Length = 296
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 31 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
+K+VLQ+ AQ+E A PVY +++G H F+ V F+ +KK AE AA
Sbjct: 216 HKSVLQQFAQRELSATPVYKLIRETGPDHRKMFLMGAMVDDRRFAPAWGNNKKDAEQRAA 275
Query: 90 KVAYMRL---KEPNPSQGP 105
A L K P S+ P
Sbjct: 276 ANALAELHNAKVPYDSEQP 294
>gi|426331791|ref|XP_004026877.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
1 [Gorilla gorilla gorilla]
Length = 1226
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 731 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 788
>gi|426218981|ref|XP_004003711.1| PREDICTED: double-stranded RNA-specific adenosine deaminase [Ovis
aries]
Length = 1155
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 686 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 743
>gi|34364836|emb|CAE45853.1| hypothetical protein [Homo sapiens]
Length = 1278
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 762 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 819
>gi|422758515|ref|ZP_16812277.1| ribonuclease III [Streptococcus dysgalactiae subsp. dysgalactiae
ATCC 27957]
gi|322411350|gb|EFY02258.1| ribonuclease III [Streptococcus dysgalactiae subsp. dysgalactiae
ATCC 27957]
Length = 230
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 31 YKNVLQELAQ-KEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK LQEL Q K A+ + G +HA F V V EV S KSKK AE AA
Sbjct: 161 YKTCLQELLQSKGDIAIDYQVISEKGPAHAKQFEVAVFVNEEVLSKGLGKSKKMAEQDAA 220
Query: 90 KVAYMRLKE 98
K A ++L E
Sbjct: 221 KNALVQLSE 229
>gi|254693019|gb|ACT79359.1| RE17094p [Drosophila melanogaster]
Length = 392
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 34 VLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
+L EL Y L Q+G HAP F +VEV G+ + GQG +SKK A + AA A
Sbjct: 61 MLNELRHGLIYKL----ESQTGPVHAPLFTISVEVDGQKYLGQG-RSKKVARIEAAATA 114
>gi|386763622|ref|NP_001245471.1| adenosine deaminase acting on RNA, isoform K [Drosophila
melanogaster]
gi|386763630|ref|NP_001245475.1| adenosine deaminase acting on RNA, isoform D [Drosophila
melanogaster]
gi|240268596|gb|ACS52172.1| ADARe2 [Drosophila melanogaster]
gi|260166757|gb|ACX32990.1| LD32961p [Drosophila melanogaster]
gi|383293143|gb|AFH07185.1| adenosine deaminase acting on RNA, isoform K [Drosophila
melanogaster]
gi|383293147|gb|AFH07189.1| adenosine deaminase acting on RNA, isoform D [Drosophila
melanogaster]
Length = 392
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 34 VLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
+L EL Y L Q+G HAP F +VEV G+ + GQG +SKK A + AA A
Sbjct: 61 MLNELRHGLIYKL----ESQTGPVHAPLFTISVEVDGQKYLGQG-RSKKVARIEAAATA 114
>gi|203284601|ref|YP_002222341.1| ribonuclease III [Borrelia duttonii Ly]
gi|203288135|ref|YP_002223150.1| ribonuclease III [Borrelia recurrentis A1]
gi|386859939|ref|YP_006272645.1| ribonuclease 3 [Borrelia crocidurae str. Achema]
gi|201084044|gb|ACH93635.1| ribonuclease III [Borrelia duttonii Ly]
gi|201085355|gb|ACH94929.1| ribonuclease III [Borrelia recurrentis A1]
gi|384934820|gb|AFI31493.1| Ribonuclease 3 [Borrelia crocidurae str. Achema]
Length = 243
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 31 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK++LQE QK+ P Y K+ G H F + V + S KSKK+AEM AA
Sbjct: 172 YKSLLQEYVQKKYKISPSYKLAKELGPDHNKIFCVELYVNDKFVSNGKGKSKKEAEMIAA 231
Query: 90 KVA 92
++A
Sbjct: 232 EMA 234
>gi|62089368|dbj|BAD93128.1| adenosine deaminase, RNA-specific isoform ADAR-a variant [Homo
sapiens]
Length = 1244
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 749 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 806
>gi|70166852|ref|NP_001102.2| double-stranded RNA-specific adenosine deaminase isoform a [Homo
sapiens]
gi|577170|gb|AAB06697.1| double-stranded RNA adenosine deaminase [Homo sapiens]
gi|23398522|gb|AAH38227.1| Adenosine deaminase, RNA-specific [Homo sapiens]
gi|119573571|gb|EAW53186.1| adenosine deaminase, RNA-specific, isoform CRA_d [Homo sapiens]
gi|157928608|gb|ABW03600.1| adenosine deaminase, RNA-specific [synthetic construct]
gi|157929250|gb|ABW03910.1| adenosine deaminase, RNA-specific [synthetic construct]
Length = 1226
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 731 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 788
>gi|915284|gb|AAC13782.1| p136 [Homo sapiens]
gi|2795791|gb|AAB97118.1| RNA adenosine deaminase [Homo sapiens]
Length = 1226
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 731 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 788
>gi|313104303|sp|P55265.4|DSRAD_HUMAN RecName: Full=Double-stranded RNA-specific adenosine deaminase;
Short=DRADA; AltName: Full=136 kDa double-stranded
RNA-binding protein; Short=p136; AltName:
Full=Interferon-inducible protein 4; Short=IFI-4;
AltName: Full=K88DSRBP
Length = 1226
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 731 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 788
>gi|2795790|gb|AAB97117.1| RNA adenosine deaminase [Homo sapiens]
Length = 1181
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 712 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 769
>gi|77416567|sp|Q7UGZ7.2|RNC_RHOBA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
Length = 266
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 31 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
+K+VLQ+ AQ+E A PVY +++G H F+ V F+ +KK AE AA
Sbjct: 186 HKSVLQQFAQRELSATPVYKLIRETGPDHRKMFLMGAMVDDRRFAPAWGNNKKDAEQRAA 245
Query: 90 KVAYMRL---KEPNPSQGP 105
A L K P S+ P
Sbjct: 246 ANALAELHNAKVPYDSEQP 264
>gi|410222682|gb|JAA08560.1| adenosine deaminase, RNA-specific [Pan troglodytes]
gi|410263176|gb|JAA19554.1| adenosine deaminase, RNA-specific [Pan troglodytes]
gi|410334879|gb|JAA36386.1| adenosine deaminase, RNA-specific [Pan troglodytes]
Length = 1226
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 731 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 788
>gi|432110996|gb|ELK34468.1| Double-stranded RNA-specific editase B2 [Myotis davidii]
Length = 347
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 87
S+ KN L +L + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 86 SMTPKNALVQLHELRP-GLQYRMVSQTGPVHAPVFAVAVEVNGLTFEGTG-PTKKKAKMR 143
Query: 88 AAKVA 92
AA++A
Sbjct: 144 AAELA 148
>gi|2795789|gb|AAB97116.1| RNA adenosine deaminase [Homo sapiens]
Length = 1200
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 731 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 788
>gi|70166944|ref|NP_056655.2| double-stranded RNA-specific adenosine deaminase isoform b [Homo
sapiens]
gi|119573575|gb|EAW53190.1| adenosine deaminase, RNA-specific, isoform CRA_f [Homo sapiens]
Length = 1200
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 731 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 788
>gi|426331795|ref|XP_004026879.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
3 [Gorilla gorilla gorilla]
Length = 1181
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 712 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 769
>gi|12711291|emb|CAA67170.1| dsRNA adenosine deaminase [Homo sapiens]
Length = 1221
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 726 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 783
>gi|256832889|ref|YP_003161616.1| ribonuclease III [Jonesia denitrificans DSM 20603]
gi|256686420|gb|ACV09313.1| ribonuclease III [Jonesia denitrificans DSM 20603]
Length = 241
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSAA 89
+K +QEL + Y P Y+ G HA F STV + + SG+G SKK AE AA
Sbjct: 166 WKTAIQELCAQLGYPQPTYDFTSQGPDHARVFTSTVVIEDRRYGSGEG-TSKKLAEQQAA 224
Query: 90 KVAY-MRLKEPNPSQG 104
+Y + + E + +QG
Sbjct: 225 HRSYDVLVAERDAAQG 240
>gi|70167032|ref|NP_056656.2| double-stranded RNA-specific adenosine deaminase isoform c [Homo
sapiens]
gi|119573570|gb|EAW53185.1| adenosine deaminase, RNA-specific, isoform CRA_c [Homo sapiens]
Length = 1181
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 712 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 769
>gi|410299060|gb|JAA28130.1| adenosine deaminase, RNA-specific [Pan troglodytes]
Length = 1226
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 731 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 788
>gi|291277478|ref|YP_003517250.1| ribonuclease III [Helicobacter mustelae 12198]
gi|290964672|emb|CBG40527.1| ribonuclease III [Helicobacter mustelae 12198]
Length = 223
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK LQEL Q + +P Y ++ G H F +V + + ++ SKK A+ + A
Sbjct: 152 YKTALQELTQAHFHEIPKYELLEEIGPDHCKKFKVSVYIQNQEYAKAIGTSKKSAQQNCA 211
Query: 90 KVAYMRLKE 98
K+AY ++ E
Sbjct: 212 KIAYQKIME 220
>gi|240268594|gb|ACS52171.1| ADARe1 [Drosophila melanogaster]
Length = 355
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 34 VLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
+L EL Y L Q+G HAP F +VEV G+ + GQG +SKK A + AA A
Sbjct: 61 MLNELRHGLIYKL----ESQTGPVHAPLFTISVEVDGQKYLGQG-RSKKVARIEAAATA 114
>gi|169342696|ref|ZP_02863737.1| ribonuclease III [Clostridium perfringens C str. JGS1495]
gi|169299202|gb|EDS81272.1| ribonuclease III [Clostridium perfringens C str. JGS1495]
Length = 237
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 31 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAK-SKKQAEMSA 88
+K LQE+ QK VYN K G H F + + + EV GQG SKK++E +A
Sbjct: 161 FKTRLQEVLQKNGEVNIVYNLVKHEGPPHRRKFFTDLLINNEVM-GQGVGFSKKESEQNA 219
Query: 89 AKVAYMRLKE 98
AK A RL E
Sbjct: 220 AKAALQRLGE 229
>gi|74188545|dbj|BAE28026.1| unnamed protein product [Mus musculus]
Length = 930
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 432 LLEYARSHGFAAEFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAA 489
>gi|157825292|ref|YP_001493012.1| ribonuclease III [Rickettsia akari str. Hartford]
gi|189043339|sp|A8GM79.1|RNC_RICAH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|157799250|gb|ABV74504.1| ribonuclease III [Rickettsia akari str. Hartford]
Length = 227
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 32 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
K LQE AQ ++ LP+Y K+ G +H+ TF V+V +G G S K+AE +AA+
Sbjct: 160 KTALQEWAQASSHHLPIYRLIKREGAAHSSTFTVLVKVKDYEQTGTG-HSIKEAEKNAAR 218
Query: 91 VAYMRLKE 98
RL++
Sbjct: 219 DLLHRLQD 226
>gi|426331793|ref|XP_004026878.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
2 [Gorilla gorilla gorilla]
Length = 1200
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 731 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 788
>gi|403383371|ref|ZP_10925428.1| ribonuclease 3 [Kurthia sp. JC30]
Length = 251
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 20 MFTNQEDDSVLYKNVLQELAQK-EAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGA 78
MF++ D +K+ LQE+ Q+ + AL K++G +H TFVS V + G+
Sbjct: 170 MFSHVMD----FKSQLQEMVQQANSGALQYTIIKENGPAHNRTFVSQVMLNGKELGVGNG 225
Query: 79 KSKKQAEMSAAKVAYMRLKE 98
KSKK+AE AA+ A + LK+
Sbjct: 226 KSKKEAEQKAAQSAMVALKK 245
>gi|338738021|ref|YP_004674983.1| ribonuclease III [Hyphomicrobium sp. MC1]
gi|337758584|emb|CCB64409.1| ribonuclease III [Hyphomicrobium sp. MC1]
Length = 235
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEV-FSGQGAKSKKQAE 85
+V K+ LQE AQ + ALP Y ++G HAP F + V + G G+GA SK+ AE
Sbjct: 157 TVDAKSALQEWAQGQGLALPRYTVVARNGPDHAPRFTAEVLIAGRAPAQGEGA-SKRIAE 215
Query: 86 MSAAKVAYMR 95
+AA R
Sbjct: 216 QAAASALLTR 225
>gi|226371684|ref|NP_001033676.2| double-stranded RNA-specific adenosine deaminase isoform 2 [Mus
musculus]
Length = 930
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 432 LLEYARSHGFAAEFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAA 489
>gi|68536283|ref|YP_250988.1| ribonuclease III [Corynebacterium jeikeium K411]
gi|90101621|sp|Q4JUY7.1|RNC_CORJK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|68263882|emb|CAI37370.1| ribonuclease III [Corynebacterium jeikeium K411]
Length = 244
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K VL E LP Y + G H TF +TV + V G+G +KK AE +AAK
Sbjct: 176 WKTVLLEKLSDMKLPLPTYEVRGEGPEHDKTFYATVTIEDLVTHGEG-HTKKVAEHAAAK 234
Query: 91 VAYMRLKE 98
A +L E
Sbjct: 235 QAVQKLNE 242
>gi|307179783|gb|EFN67973.1| Double-stranded RNA-specific editase Adar [Camponotus floridanus]
Length = 1657
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYM 94
L EL Y + Q+G +HAP F V++ G+ + G+G ++KK A+ +AA++A
Sbjct: 1080 LNELKTGATYKV----VGQTGPTHAPIFTIAVQIDGQTYEGKG-RTKKMAKHAAAELALR 1134
Query: 95 RLKE----PNPSQGPALVSPDIQAQADYSS 120
+ + P Q P + + D++S
Sbjct: 1135 NIIQFRNTPEVHQAINTCQPVVPLEPDFTS 1164
>gi|221044884|dbj|BAH14119.1| unnamed protein product [Homo sapiens]
Length = 970
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 731 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 788
>gi|110801795|ref|YP_699005.1| ribonuclease III [Clostridium perfringens SM101]
gi|110682296|gb|ABG85666.1| ribonuclease III [Clostridium perfringens SM101]
Length = 241
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 31 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAK-SKKQAEMSA 88
+K LQE+ QK VYN K G H F + + + EV GQG SKK++E +A
Sbjct: 165 FKTRLQEVLQKNGEVNIVYNLVKHEGPPHRRKFFTDLLINNEVM-GQGVGFSKKESEQNA 223
Query: 89 AKVAYMRLKE 98
AK A RL E
Sbjct: 224 AKAALQRLGE 233
>gi|315221419|ref|ZP_07863340.1| ribonuclease III [Streptococcus anginosus F0211]
gi|315189538|gb|EFU23232.1| ribonuclease III [Streptococcus anginosus F0211]
Length = 232
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 31 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGE-VFSGQGAKSKKQAEMSA 88
YK LQEL Q VY T +SG +HA F V V G V GQG +SKK AE A
Sbjct: 161 YKTKLQELLQVNGDVEIVYQVTSESGPAHAKEFAVAVSVDGRTVGQGQG-RSKKLAEQEA 219
Query: 89 AKVAY 93
AK A+
Sbjct: 220 AKNAF 224
>gi|261377909|ref|ZP_05982482.1| ribonuclease III [Neisseria cinerea ATCC 14685]
gi|269145767|gb|EEZ72185.1| ribonuclease III [Neisseria cinerea ATCC 14685]
Length = 239
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
Query: 21 FTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVG--GEVFSGQG 77
F NQE D K LQE Q +ALP Y +Q G ++ FV + ++G G V +G
Sbjct: 154 FQNQEKDG---KTALQEALQARRFALPKYRIEEQIGHANDSMFVISCDLGELGFVCRAKG 210
Query: 78 AKSKKQAEMSAAKVA 92
S+K AE SAAK A
Sbjct: 211 T-SRKAAEQSAAKEA 224
>gi|442321139|ref|YP_007361160.1| ribonuclease III [Myxococcus stipitatus DSM 14675]
gi|441488781|gb|AGC45476.1| ribonuclease III [Myxococcus stipitatus DSM 14675]
Length = 257
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK +LQE+A ++ P Y ++G H+ F + +G + +SKK+AE SAA
Sbjct: 162 YKTLLQEMAHEKLKLSPRYRVVSEAGPEHSKVFEVELTLGDAPLARASGRSKKEAEQSAA 221
Query: 90 KVAYMRLKE---PNPSQG---PALVSPDI 112
+ RLK P G PA +P++
Sbjct: 222 QATLERLKREAAATPEAGGEAPAAPTPEV 250
>gi|13272339|gb|AAK17103.1|AF291050_1 RNA adenosine deaminase 1 [Mus musculus]
Length = 1152
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 26/58 (44%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ AA A
Sbjct: 680 LLEYARSHGFAAEFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGXQDAADAA 737
>gi|410987074|ref|XP_003999833.1| PREDICTED: double-stranded RNA-specific adenosine deaminase [Felis
catus]
Length = 1083
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 640 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 697
>gi|386763624|ref|NP_001245472.1| adenosine deaminase acting on RNA, isoform L [Drosophila
melanogaster]
gi|383293144|gb|AFH07186.1| adenosine deaminase acting on RNA, isoform L [Drosophila
melanogaster]
Length = 370
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 34 VLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
+L EL Y L Q+G HAP F +VEV G+ + GQG +SKK A + AA A
Sbjct: 61 MLNELRHGLIYKL----ESQTGPVHAPLFTISVEVDGQKYLGQG-RSKKVARIEAAATA 114
>gi|386763620|ref|NP_001245470.1| adenosine deaminase acting on RNA, isoform J [Drosophila
melanogaster]
gi|383293142|gb|AFH07184.1| adenosine deaminase acting on RNA, isoform J [Drosophila
melanogaster]
Length = 389
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 34 VLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
+L EL Y L Q+G HAP F +VEV G+ + GQG +SKK A + AA A
Sbjct: 58 MLNELRHGLIYKL----ESQTGPVHAPLFTISVEVDGQKYLGQG-RSKKVARIEAAATA 111
>gi|197119571|ref|YP_002139998.1| ribonuclease III [Geobacter bemidjiensis Bem]
gi|197088931|gb|ACH40202.1| ribonuclease III [Geobacter bemidjiensis Bem]
Length = 232
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 32 KNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
K LQE A+ LP Y KQ +G H F V +G E+ ++KK+AE AA+
Sbjct: 163 KTELQETARLFKGELPRYQLKQVTGPDHDKRFTVEVYLGEELMGEGVGRTKKEAEQDAAR 222
Query: 91 VAYMRLK 97
A++ LK
Sbjct: 223 AAFLLLK 229
>gi|431892377|gb|ELK02817.1| Double-stranded RNA-specific adenosine deaminase [Pteropus alecto]
Length = 1039
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 28/62 (45%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYM 94
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 570 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALR 629
Query: 95 RL 96
L
Sbjct: 630 VL 631
>gi|298571391|gb|ADI87733.1| RNase III [uncultured Nitrospirae bacterium MY3-5B]
Length = 263
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 31 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK LQE++QK +LP Y +SG H FV V + G+ K+KK A+ +AA
Sbjct: 175 YKTELQEISQKLFSSLPEYKLVLESGNDHDKDFVYEVYLDGKCMGTGSGKNKKTAQSAAA 234
Query: 90 KVAYMRLKEPNPSQGPA 106
+A L P + A
Sbjct: 235 CMALETLGNPKSIESSA 251
>gi|291397874|ref|XP_002715382.1| PREDICTED: adenosine deaminase, RNA-specific [Oryctolagus
cuniculus]
Length = 1150
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 678 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 735
>gi|149183216|ref|ZP_01861662.1| ribonuclease III [Bacillus sp. SG-1]
gi|148849081|gb|EDL63285.1| ribonuclease III [Bacillus sp. SG-1]
Length = 249
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
+K+ LQEL Q+++ Y Q G +H FVS V + GE +SKK+AE AA
Sbjct: 176 FKSQLQELVQRDSAGTIEYGILQEKGPAHNREFVSRVCLNGEELGIGTGRSKKEAEQHAA 235
Query: 90 KVAYMRLK 97
++A +LK
Sbjct: 236 QMALEKLK 243
>gi|332024427|gb|EGI64625.1| Double-stranded RNA-specific editase Adar [Acromyrmex echinatior]
Length = 673
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 49 YNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE----PNPSQ 103
YN Q+G +HAP F V++ G+ + G+G ++KK A+ +AA++A + + P Q
Sbjct: 109 YNVVGQTGPTHAPIFTIAVQIDGQTYEGKG-RTKKMAKHAAAELALRNIVQFRNTPEVHQ 167
Query: 104 GPALVSPDIQAQADYSS 120
P + + D++S
Sbjct: 168 AINTCQPVVPLEPDFTS 184
>gi|380786015|gb|AFE64883.1| double-stranded RNA-specific adenosine deaminase isoform d [Macaca
mulatta]
Length = 931
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 436 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 493
>gi|312088759|ref|XP_003145984.1| hypothetical protein LOAG_10412 [Loa loa]
Length = 689
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 104 GPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGRLVFNPNSMPKVQAEEIRELTTVN 163
GP +S D Q + +SSS++Q +T N++ L + N +R+ TT N
Sbjct: 527 GPTHISID-QTVSPFSSSTIQRIITTSSLPNLEATDNLSSSNN---------LRKGTTSN 576
Query: 164 TEVAGYDLSQFPQPEFSSSSDLSASSGVEKGMPSSSLPL 202
+ +LS PQPE + SSD +S K M S+++P+
Sbjct: 577 IVLPELELSTIPQPELTLSSDTELASHWMKDMSSTNIPV 615
>gi|85724778|ref|NP_001033821.1| adenosine deaminase acting on RNA, isoform C [Drosophila
melanogaster]
gi|84798392|gb|ABC67164.1| adenosine deaminase acting on RNA, isoform C [Drosophila
melanogaster]
gi|294712595|gb|ADF29633.1| SD06892p [Drosophila melanogaster]
Length = 186
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 34 VLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
+L EL Y L Q+G HAP F +VEV G+ + GQG +SKK A + AA A
Sbjct: 61 MLNELRHGLIYKL----ESQTGPVHAPLFTISVEVDGQKYLGQG-RSKKVARIEAAATA 114
>gi|371943592|gb|AEX61420.1| hypothetical protein c7_L354 [Megavirus courdo7]
Length = 246
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 32 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTV--EVGGEVFSGQGAKSKKQAEMSAA 89
KN LQE QK +P+YN+ SG H + S++ + G+ F+ G+K+ +S
Sbjct: 5 KNKLQEYFQKNKLPIPIYNSISSGPDHNKIWTSSIVATINGQEFTLVGSKNSNSKTISQQ 64
Query: 90 KVA 92
VA
Sbjct: 65 MVA 67
>gi|356527870|ref|XP_003532529.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Glycine
max]
Length = 1177
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
YKN LQ + + P Y TK+ + F +TV G F GQ SKK AE SAA
Sbjct: 1080 YKNHLQAFLNRAGHDSPTYKTKELKNNQ---FRTTVVFNGLNFVGQPCSSKKLAEKSAAA 1136
Query: 91 VAYMRLK 97
A + +K
Sbjct: 1137 EALLWIK 1143
>gi|386316522|ref|YP_006012686.1| ribonuclease III, partial [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|323126809|gb|ADX24106.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
ATCC 12394]
Length = 151
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 31 YKNVLQELAQ-KEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK LQEL Q K A+ + G +HA F V V EV S KSKK AE AA
Sbjct: 82 YKTCLQELLQSKGDIAIDYQVISEKGPAHAKQFEVAVFVNEEVLSKGLGKSKKMAEQDAA 141
Query: 90 KVAYMRLKE 98
K A ++L E
Sbjct: 142 KNALVQLSE 150
>gi|439871|gb|AAA69690.1| ribonuclease [Coxiella burnetii]
Length = 233
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 32 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAK-SKKQAEMSAAK 90
K++LQE Q LP Y K +GE+HA TF V G +G ++++AE AAK
Sbjct: 155 KSLLQEWLQARRLPLPTYEVKITGEAHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAK 214
Query: 91 VAYMRLKEPNPSQG 104
++ L + G
Sbjct: 215 -RFLELLDDGKGDG 227
>gi|61218669|sp|Q9NII1.2|ADAR_DROME RecName: Full=Double-stranded RNA-specific editase Adar; AltName:
Full=Adenosine deaminase that act on RNA; AltName:
Full=Pre-mRNA adenosine deaminase; AltName:
Full=RNA-editing deaminase 1; AltName: Full=RNA-editing
enzyme 1; AltName: Full=dADAR; AltName: Full=dsRNA
adenosine deaminase
Length = 676
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 34 VLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
+L EL Y L Q+G HAP F +VEV G+ + GQG +SKK A + AA A
Sbjct: 68 MLNELRHGLIYKL----ESQTGPVHAPLFTISVEVDGQKYLGQG-RSKKVARIEAAATA 121
>gi|328952899|ref|YP_004370233.1| ribonuclease 3 [Desulfobacca acetoxidans DSM 11109]
gi|328453223|gb|AEB09052.1| Ribonuclease 3 [Desulfobacca acetoxidans DSM 11109]
Length = 231
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 14 RSQLSMMF----TNQEDDSVL--YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTV 66
R + ++F T ED + + +K +LQE AQK P Y +G +HA TF V
Sbjct: 139 RGVVKLLFQASLTRLEDKASMQDFKTLLQEYAQKNLKVTPTYRVVTATGPAHARTFEVEV 198
Query: 67 EVGGEVFS-GQGAKSKKQAEMSAAKVA 92
+ + + GQG KSKKQA AA++A
Sbjct: 199 WLADQPWGRGQG-KSKKQAAQEAARLA 224
>gi|444721725|gb|ELW62445.1| Double-stranded RNA-specific adenosine deaminase [Tupaia chinensis]
Length = 1234
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 28/62 (45%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYM 94
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 751 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALR 810
Query: 95 RL 96
L
Sbjct: 811 VL 812
>gi|385246979|gb|AFI49529.1| double-stranded RNA-binding protein [Buffalopox virus]
Length = 190
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 49 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|195133919|ref|XP_002011386.1| GI16028 [Drosophila mojavensis]
gi|193907361|gb|EDW06228.1| GI16028 [Drosophila mojavensis]
Length = 633
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 34 VLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
+L EL Y L Q+G HAP F +VEV G+ + GQG +SKK A + AA A
Sbjct: 62 MLNELRHGLIYKL----ESQTGPVHAPLFTISVEVDGQKYMGQG-RSKKVARIEAAATA 115
>gi|4164311|emb|CAA22774.1| EG:BACN35H14.1 [Drosophila melanogaster]
Length = 653
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 34 VLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
+L EL Y L Q+G HAP F +VEV G+ + GQG +SKK A + AA A
Sbjct: 61 MLNELRHGLIYKL----ESQTGPVHAPLFTISVEVDGQKYLGQG-RSKKVARIEAAATA 114
>gi|32266198|ref|NP_860230.1| ribonuclease III [Helicobacter hepaticus ATCC 51449]
gi|81666107|sp|Q7VIA9.1|RNC_HELHP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|32262248|gb|AAP77296.1| ribonuclease III [Helicobacter hepaticus ATCC 51449]
Length = 240
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Query: 2 LEKQIELLRSMQRSQLSMMFTNQEDDSVL--YKNVLQELAQKEAYALPVYN-TKQSGESH 58
LE + ++S+ L + + DS+ YK LQE+ Q +P Y +SG H
Sbjct: 130 LESSLTYVQSIIYDLLEYNYIKIDLDSLFMDYKTALQEITQAFYGEIPTYTLISESGPDH 189
Query: 59 APTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+F + V G+ ++ SKK+A+ +A++AY +L
Sbjct: 190 KKSFEIALSVQGKEYARASGNSKKEAQQKSAQIAYKKL 227
>gi|108804222|ref|YP_644159.1| RNAse III [Rubrobacter xylanophilus DSM 9941]
gi|108765465|gb|ABG04347.1| RNAse III [Rubrobacter xylanophilus DSM 9941]
Length = 233
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGG-EVFSGQGAKSKKQAEMSA 88
+K +LQE Q E P Y + G H P F+S V V G EV +G+G+ S KQ+E +A
Sbjct: 152 WKTLLQETLQAEGLR-PTYRVISKQGPPHRPVFISGVSVDGEEVATGRGS-SIKQSEQAA 209
Query: 89 AKVA 92
A+ A
Sbjct: 210 ARAA 213
>gi|2326524|emb|CAA55967.1| IFI-4 [Homo sapiens]
gi|12711292|emb|CAA67169.1| dsRNA adenosine deaminase [Homo sapiens]
Length = 931
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 436 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 493
>gi|332810381|ref|XP_513841.3| PREDICTED: double-stranded RNA-specific adenosine deaminase [Pan
troglodytes]
Length = 931
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 436 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 493
>gi|195403581|ref|XP_002060356.1| GJ18414 [Drosophila virilis]
gi|194147402|gb|EDW63114.1| GJ18414 [Drosophila virilis]
Length = 633
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 34 VLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
+L EL Y L Q+G HAP F +VEV G+ + GQG +SKK A + AA A
Sbjct: 62 MLNELRHGLIYKL----ESQTGPVHAPLFTISVEVDGQKYMGQG-RSKKVARIEAAATA 115
>gi|386749829|ref|YP_006223036.1| ribonuclease III [Helicobacter cetorum MIT 00-7128]
gi|384556072|gb|AFI04406.1| ribonuclease III [Helicobacter cetorum MIT 00-7128]
Length = 234
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y ++G H F + +
Sbjct: 150 RAYKRLDLEYLFAD-------YKTALQELTQAKFGIIPKYELISENGPDHHKEFEIALLI 202
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
+++ KSKK A+ A +A+ +LKE
Sbjct: 203 NDTIYAKAKGKSKKDAQQQCALIAFNQLKE 232
>gi|114770106|ref|ZP_01447644.1| Ribonuclease III [Rhodobacterales bacterium HTCC2255]
gi|114548943|gb|EAU51826.1| Ribonuclease III [alpha proteobacterium HTCC2255]
Length = 226
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 2 LEKQIELLRSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVY-NTKQSGESHAP 60
L+ E+ R M S N D+ K +LQE AQ + P Y +SG HAP
Sbjct: 129 LDAGFEIARDMVIRLWSNHIDNAAHDARDSKTILQEWAQAKKLPTPKYIEVDRSGPDHAP 188
Query: 61 TFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
F T+EV E +GQ AK++ Q++ +A++ A
Sbjct: 189 IF--TIEVSIE--TGQSAKAQAQSKRAASQDA 216
>gi|70167113|ref|NP_001020278.1| double-stranded RNA-specific adenosine deaminase isoform d [Homo
sapiens]
gi|301601658|ref|NP_001180424.1| double-stranded RNA-specific adenosine deaminase isoform d [Homo
sapiens]
gi|119573568|gb|EAW53183.1| adenosine deaminase, RNA-specific, isoform CRA_a [Homo sapiens]
gi|119573572|gb|EAW53187.1| adenosine deaminase, RNA-specific, isoform CRA_a [Homo sapiens]
Length = 931
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 436 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 493
>gi|24639162|ref|NP_569940.2| adenosine deaminase acting on RNA, isoform A [Drosophila
melanogaster]
gi|386763618|ref|NP_001245469.1| adenosine deaminase acting on RNA, isoform I [Drosophila
melanogaster]
gi|13448047|gb|AAK26850.1| pre-mRNA adenosine deaminase [Drosophila melanogaster]
gi|22831515|gb|AAF45665.2| adenosine deaminase acting on RNA, isoform A [Drosophila
melanogaster]
gi|383293141|gb|AFH07183.1| adenosine deaminase acting on RNA, isoform I [Drosophila
melanogaster]
Length = 632
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 34 VLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
+L EL Y L Q+G HAP F +VEV G+ + GQG +SKK A + AA A
Sbjct: 61 MLNELRHGLIYKL----ESQTGPVHAPLFTISVEVDGQKYLGQG-RSKKVARIEAAATA 114
>gi|336117263|ref|YP_004572030.1| ribonuclease III [Microlunatus phosphovorus NM-1]
gi|334685042|dbj|BAK34627.1| ribonuclease III [Microlunatus phosphovorus NM-1]
Length = 233
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFS 74
+K LQE+A + +PVY +SG HA TF +TV VG + +
Sbjct: 166 WKTSLQEVASLGGHGVPVYVVSESGPDHAKTFSATVVVGDQTYG 209
>gi|119573569|gb|EAW53184.1| adenosine deaminase, RNA-specific, isoform CRA_b [Homo sapiens]
gi|119573574|gb|EAW53189.1| adenosine deaminase, RNA-specific, isoform CRA_b [Homo sapiens]
Length = 886
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 35 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 92
L E A+ +A QSG H P FV +VGG F A SKKQ + AA A
Sbjct: 417 LLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAA 474
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.310 0.124 0.344
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,848,404,185
Number of Sequences: 23463169
Number of extensions: 148182612
Number of successful extensions: 349347
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 1260
Number of HSP's that attempted gapping in prelim test: 347189
Number of HSP's gapped (non-prelim): 2861
length of query: 261
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 122
effective length of database: 9,097,814,876
effective search space: 1109933414872
effective search space used: 1109933414872
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 75 (33.5 bits)