BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024888
(261 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8H1D4|DRB4_ARATH Double-stranded RNA-binding protein 4 OS=Arabidopsis thaliana
GN=DBR4 PE=1 SV=1
Length = 355
Score = 100 bits (250), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 137/281 (48%), Gaps = 58/281 (20%)
Query: 25 EDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQA 84
E V YKN+LQE+AQKE+ LP Y T SG SHAPTF STVE G+VFSG+ AK+KK A
Sbjct: 77 EGIDVAYKNLLQEIAQKESSLLPFYATATSGPSHAPTFTSTVEFAGKVFSGEEAKTKKLA 136
Query: 85 EMSAAKVAYMRLKEPNPSQ--GPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGRLV 142
EMSAAKVA+M +K N +Q P L S + Q D +S+ S ++H Q + ++V
Sbjct: 137 EMSAAKVAFMSIKNGNSNQTGSPTLPS---ERQEDVNSNVKSS--PQEIHS--QPSSKVV 189
Query: 143 FNPNSMP---KVQAEEIRELTTV---NTEVAGYDLSQFPQPEFSSSSDLSASSGVEKGMP 196
P++ KV +E +L N + L++ P + + G++ +
Sbjct: 190 MTPDTPSKGIKVNEDEFPDLHDAPASNAKEINVALNEPENPTNDGTLSALTTDGMKMNIA 249
Query: 197 SSSLPLE------CTVD-PRVDPIAQSVRA-----------DG---RTCKI--------- 226
SSSLP+ T++ P + I +++ A DG +C +
Sbjct: 250 SSSLPIPHNPTNVITLNAPAANGIKRNIAACSSWMPQNPTNDGSETSSCVVDESEKKKLI 309
Query: 227 -------------IRVRPNRPNMKFPEGSSVLHRDNQWVAW 254
+ RP P + P+ + +L RD++++A+
Sbjct: 310 MGTGHLSIPTGQHVVCRPWNPEITLPQDAEMLFRDDKFIAY 350
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YK LQ A + LPVY ++ G HAP F V G+ F S + + K AE +A
Sbjct: 4 VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63
Query: 89 AKVAYMRLKEPNP 101
AK+A L +P
Sbjct: 64 AKIAVASLTPQSP 76
>sp|B7E321|DRB5_ORYSJ Double-stranded RNA-binding protein 5 OS=Oryza sativa subsp.
japonica GN=DRB5 PE=2 SV=1
Length = 404
Score = 78.2 bits (191), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 57/96 (59%)
Query: 5 QIELLRSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVS 64
++ L R R S + D++ +YKN+LQE A + LPVY T +SG H+P F S
Sbjct: 62 EVALARLSLRGPSSSLTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFSS 121
Query: 65 TVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 100
TVE+ G F+G AK+KK AE +AA A+ LK+ N
Sbjct: 122 TVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLKQSN 157
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSG-QGAKSKKQAEMSA 88
+YKN LQELAQ+ ++LP Y + G HAP F +TV GE F G + +QAE +A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 89 AKVAYMRLKEPNPS 102
A+VA RL PS
Sbjct: 61 AEVALARLSLRGPS 74
>sp|Q0DKP4|DRB2_ORYSJ Double-stranded RNA-binding protein 2 OS=Oryza sativa subsp.
japonica GN=DRB2 PE=2 SV=1
Length = 593
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 47/73 (64%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE A + LPVY T +SG H P F TVE+ G F+G K+KKQA+
Sbjct: 83 DETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVFTCTVELAGMTFTGNPGKTKKQAQ 142
Query: 86 MSAAKVAYMRLKE 98
+AA A+ LK+
Sbjct: 143 KNAAMAAWSELKQ 155
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YKN LQELAQ+ + LP Y + G HAP F +TV GE F S + + AE +A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 60
Query: 89 AKVAYMRLKEPNPS 102
A+VA L + PS
Sbjct: 61 AEVALNELSKRGPS 74
>sp|Q9LJF5|DRB3_ARATH Double-stranded RNA-binding protein 3 OS=Arabidopsis thaliana
GN=DRB3 PE=2 SV=1
Length = 359
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 50/73 (68%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE A + LPVY + +SG H PTF TVE+ G F+G+ AK+KKQAE
Sbjct: 83 DETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFSCTVELAGMSFNGESAKTKKQAE 142
Query: 86 MSAAKVAYMRLKE 98
+AA A+ L++
Sbjct: 143 KNAAIAAWFSLRK 155
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YKN LQELAQ+ ++LP Y + G HAP F ++V GE+F S + +QAE SA
Sbjct: 1 MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60
Query: 89 AKVAYMRLKEPNPSQ 103
A+VA L PS+
Sbjct: 61 AEVALSALSSKGPSK 75
>sp|Q9AV50|DRB6_ORYSJ Double-stranded RNA-binding protein 6 OS=Oryza sativa subsp.
japonica GN=DRB6 PE=2 SV=1
Length = 514
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 50/73 (68%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE+AQ+ LP Y T++SG H P F TVE+ G F+G AK+KKQAE
Sbjct: 83 DETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFTCTVELAGITFTGDPAKNKKQAE 142
Query: 86 MSAAKVAYMRLKE 98
+AA A+ L++
Sbjct: 143 KNAASAAWSSLRQ 155
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 27/48 (56%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQG 77
+YKN LQELAQ+ + LP Y + G HAP F + V GE F G
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPG 48
>sp|Q9SKN2|DRB2_ARATH Double-stranded RNA-binding protein 2 OS=Arabidopsis thaliana
GN=DRB2 PE=1 SV=1
Length = 434
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 49/73 (67%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE+AQ+ LP Y T +SG H P F TVE+ G F+G AK+KKQAE
Sbjct: 83 DETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFTGTVELAGITFTGDPAKNKKQAE 142
Query: 86 MSAAKVAYMRLKE 98
+AA A+ LK+
Sbjct: 143 KNAAMAAWSSLKQ 155
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YKN LQELAQ+ + LP Y + G HAP F +TV GE+F S Q + +QAE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60
Query: 89 AKVAYMRLKEPNPSQ 103
A+VA L PS
Sbjct: 61 AEVALNALSNRGPSH 75
>sp|Q8GY79|DRB5_ARATH Double-stranded RNA-binding protein 5 OS=Arabidopsis thaliana
GN=DRB5 PE=1 SV=1
Length = 393
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 49/73 (67%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 85
D++ +YKN+LQE A + LP+Y + +SG H P F TVE+ G F+G+ AK+KKQAE
Sbjct: 83 DETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFSCTVELAGMTFTGESAKTKKQAE 142
Query: 86 MSAAKVAYMRLKE 98
+AA A+ LK+
Sbjct: 143 KNAAIAAWSSLKK 155
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 88
+YKN LQELAQ+ + LP Y + G HAP F ++V GE+F S + +QAE +A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60
Query: 89 AKVAYMRLKEPNPSQ 103
A+V+ L PS+
Sbjct: 61 AEVSLNVLSSRVPSK 75
>sp|Q5N8Z0|DRB1_ORYSJ Double-stranded RNA-binding protein 1 OS=Oryza sativa subsp.
japonica GN=DRB1 PE=2 SV=1
Length = 441
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 8/92 (8%)
Query: 15 SQLSMMFTNQEDDS--------VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTV 66
++L++M QE S + YKN+LQELAQK ++LPVY+T G P F STV
Sbjct: 146 AKLALMSLPQEASSSEQVPVQPLSYKNLLQELAQKHGFSLPVYSTTSDGSVQVPMFKSTV 205
Query: 67 EVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
F G+ A +KKQAEM+AA+VA+ ++
Sbjct: 206 VFQDGSFQGEPANTKKQAEMNAARVAFQHFED 237
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSG--QGAKSKKQAEMS 87
+YK+ LQEL Q+ +A P Y + +G +HAP F +TV V G F A+S K+A
Sbjct: 1 MYKSRLQELCQQRRWAPPEYTHRCAGPAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNI 60
Query: 88 AAKVAY 93
AAK A+
Sbjct: 61 AAKAAF 66
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSAA 89
YK+ LQ AQK+ LP Y T + G HA F S V V G+ F S + + K+AE +AA
Sbjct: 87 YKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKSVVTVDGKAFESPEYFHTVKEAESAAA 146
Query: 90 KVAYMRL 96
K+A M L
Sbjct: 147 KLALMSL 153
Score = 34.7 bits (78), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 214 AQSVRADGRTCKI----IRVRPNRPNMKFPEGSSVL-HRDNQWVA 253
A +V + G C + ++V P RP++ PEG++VL D+ WVA
Sbjct: 389 ASTVSSTGCGCSLLTNRVQVYPRRPDLVLPEGATVLPFSDDVWVA 433
>sp|Q0IV63|DRB7_ORYSJ Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp.
japonica GN=DRB7 PE=2 SV=1
Length = 473
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
L KN+LQE AQK YA+P Y +S AP F+ TVE+GG + G A++KK AE+ AA
Sbjct: 118 LCKNLLQEYAQKMNYAIPSYICTKSASGLAP-FICTVEIGGIQYIGAAARTKKDAEIKAA 176
Query: 90 KVAYMRLK 97
+ A + ++
Sbjct: 177 RTALLAIQ 184
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQA 84
++ ++K+ LQE AQK P Y+T + G SH P F STV + + S G ++K A
Sbjct: 29 ENCYVFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAA 88
Query: 85 EMSAAKVAYMRL 96
E SAA+VA M +
Sbjct: 89 EQSAAEVALMEI 100
>sp|Q0IQN6|DRB8_ORYSJ Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp.
japonica GN=DRB8 PE=2 SV=1
Length = 424
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
L KN+LQE AQK YA+P Y +S AP F+ TVE+GG + G A++KK AE+ AA
Sbjct: 118 LCKNLLQEYAQKMNYAIPSYICTKSASGLAP-FICTVEIGGIQYIGAAARTKKDAEIKAA 176
Query: 90 KVAYMRLK 97
+ A + ++
Sbjct: 177 RTALLAIQ 184
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQA 84
++ ++K+ LQE AQK P Y+T + G SH P F STV + + S G ++K A
Sbjct: 29 ENCYVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAA 88
Query: 85 EMSAAKVAYMRL 96
E SAA+VA M +
Sbjct: 89 EQSAAEVALMEI 100
>sp|Q0DJA3|DRB3_ORYSJ Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp.
japonica GN=DRB3 PE=2 SV=1
Length = 437
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 30 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
L KN+LQE AQK YA+P Y + AP F+ TVE+GG + G A++KK AE+ AA
Sbjct: 120 LCKNLLQEYAQKMNYAIPSYICTKPASGLAP-FLCTVEIGGIQYIGAAARTKKDAEIKAA 178
Query: 90 KVAYMRLK 97
+ A + ++
Sbjct: 179 RTALLAIQ 186
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQA 84
++ ++K+ LQE AQK P Y+T + G SH P F STV + + S G ++K A
Sbjct: 31 ENCYVFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAA 90
Query: 85 EMSAAKVAYMRL 96
E SAA+VA M +
Sbjct: 91 EQSAAEVALMEI 102
>sp|O04492|DRB1_ARATH Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana
GN=DRB1 PE=1 SV=1
Length = 419
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 9 LRSMQRS-QLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTV 66
LR + +S +LS + ++ L KN+LQE AQK YA+P+Y K F TV
Sbjct: 79 LRELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTV 138
Query: 67 EVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 97
E+GG ++G ++KK AE+SA + A + ++
Sbjct: 139 EIGGIKYTGAATRTKKDAEISAGRTALLAIQ 169
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 27 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAE 85
+ ++K+ LQE AQK PVY + G SH F STV + G + S G ++K AE
Sbjct: 12 NCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAE 71
Query: 86 MSAAKVAYMRL 96
SAA+VA L
Sbjct: 72 QSAAEVALREL 82
>sp|Q73NX5|RNC_TREDE Ribonuclease 3 OS=Treponema denticola (strain ATCC 35405 / CIP
103919 / DSM 14222) GN=rnc PE=3 SV=1
Length = 246
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 50/92 (54%), Gaps = 7/92 (7%)
Query: 6 IELLRSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVS 64
+ LL S S L F + YK++LQEL QK+ +P Y K+ SG H TF
Sbjct: 153 LRLLESTIHSVLEKKFISD------YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWF 206
Query: 65 TVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
+V + G+V+ K+KK+AE S AKVAY L
Sbjct: 207 SVSINGKVYGPLSGKTKKEAEQSVAKVAYENL 238
>sp|Q6YW64|DRB4_ORYSJ Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp.
japonica GN=DRB4 PE=2 SV=1
Length = 312
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSK-KQAEMSAA 89
YK+ LQE Q+ LP+Y TK GE H F STV V GE FS + K AE AA
Sbjct: 39 YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSSTFCHRRVKDAEQDAA 98
Query: 90 KVAYMRLKE 98
KVAY L E
Sbjct: 99 KVAYDTLLE 107
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 20 MFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAK 79
+F + D V K++L E K P Y+ ++ S P +VS+V G ++G A+
Sbjct: 118 VFELIDQDVVFSKSILHEYTTKTKTDQPEYSVTKTEGSVTP-YVSSVSFAGHTYTGGAAR 176
Query: 80 SKKQAEMSAAKVAYMRL 96
+KK AE AA+ A L
Sbjct: 177 NKKDAEQKAARAAVKSL 193
>sp|Q6AFJ4|RNC_LEIXX Ribonuclease 3 OS=Leifsonia xyli subsp. xyli (strain CTCB07) GN=rnc
PE=3 SV=1
Length = 237
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 36/65 (55%)
Query: 32 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 91
K LQE A PVY +G H+ TF +TV+VGG V + SKKQAEM+AA
Sbjct: 163 KTSLQEAAAHHGAGQPVYTVINTGPDHSKTFHATVDVGGLVTASGEGTSKKQAEMAAALS 222
Query: 92 AYMRL 96
A+ L
Sbjct: 223 AWTAL 227
>sp|Q47S78|RNC_THEFY Ribonuclease 3 OS=Thermobifida fusca (strain YX) GN=rnc PE=3 SV=1
Length = 240
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSAA 89
+K LQEL E +P Y ++SG H TF +TV V G+ + SG+G +SKK+AE AA
Sbjct: 164 WKTSLQELTAAELLGVPEYVVEESGPDHQKTFRATVRVAGQTYGSGEG-RSKKEAEQQAA 222
Query: 90 KVAYMRLK 97
+ A+ ++
Sbjct: 223 ESAWKAIR 230
>sp|B2A2N1|RNC_NATTJ Ribonuclease 3 OS=Natranaerobius thermophilus (strain ATCC BAA-1301
/ DSM 18059 / JW/NM-WN-LF) GN=rnc PE=3 SV=1
Length = 230
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Query: 7 ELLRSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVST 65
+L+ + + QLS + + D YK ++QEL Q P Y K+SG H +FV+
Sbjct: 141 QLILDLFKDQLSHIDNQRIGD---YKTMIQELVQDRYGDPPKYQIVKESGPDHDKSFVAE 197
Query: 66 VEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 96
V++ EV KSKK+AE +AA A+ +L
Sbjct: 198 VQINNEVVGRGSGKSKKEAEQNAAHFAFQKL 228
>sp|Q91ZS8|RED1_MOUSE Double-stranded RNA-specific editase 1 OS=Mus musculus GN=Adarb1
PE=1 SV=1
Length = 711
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 89 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 120
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 37.7 bits (86), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPVLS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>sp|P51400|RED1_RAT Double-stranded RNA-specific editase 1 OS=Rattus norvegicus
GN=Adarb1 PE=1 SV=1
Length = 711
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAA 135
Query: 89 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSS 120
K ++ PN S+ + + D++S
Sbjct: 136 EKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 37.7 bits (86), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPVLS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>sp|Q8EXX3|RNC_LEPIN Ribonuclease 3 OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar Lai (strain 56601) GN=rnc
PE=3 SV=1
Length = 247
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK LQE +QK LP+Y TK +SG HA TF V + + + SKK AE +AA
Sbjct: 177 YKTQLQEYSQKHFKILPIYRTKSESGPDHAKTFQVVVRIRDQWEASGSGVSKKSAEQNAA 236
Query: 90 KVAYMRLKE 98
K Y R+++
Sbjct: 237 KELYNRIRK 245
>sp|Q75FW5|RNC_LEPIC Ribonuclease 3 OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar copenhageni (strain Fiocruz
L1-130) GN=rnc PE=3 SV=1
Length = 247
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK LQE +QK LP+Y TK +SG HA TF V + + + SKK AE +AA
Sbjct: 177 YKTQLQEYSQKHFKILPIYRTKSESGPDHAKTFQVVVRIRDQWEASGSGVSKKSAEQNAA 236
Query: 90 KVAYMRLKE 98
K Y R+++
Sbjct: 237 KELYNRIRK 245
>sp|P78563|RED1_HUMAN Double-stranded RNA-specific editase 1 OS=Homo sapiens GN=ADARB1
PE=1 SV=1
Length = 741
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 88
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAA 135
Query: 89 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSS 120
K ++ PN S+ + + D++S
Sbjct: 136 EKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 53 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 102
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALAAIFNLHLDQTPSRQPIPS 312
Query: 103 QGPALVSPDIQAQA 116
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>sp|Q5YS08|RNC_NOCFA Ribonuclease 3 OS=Nocardia farcinica (strain IFM 10152) GN=rnc PE=3
SV=1
Length = 240
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSAA 89
+K LQEL + +P Y +G H F +T +GG + GQG +SKK+AE AA
Sbjct: 171 WKTSLQELTAERGLGVPSYEISSTGPDHDKEFTATTVIGGRAY-GQGVGRSKKEAEQKAA 229
Query: 90 KVAYMRL 96
AY L
Sbjct: 230 GAAYQAL 236
>sp|Q04R64|RNC_LEPBJ Ribonuclease 3 OS=Leptospira borgpetersenii serovar Hardjo-bovis
(strain JB197) GN=rnc PE=3 SV=1
Length = 247
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 31 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEV-FSGQGAKSKKQAEMSA 88
YK LQE +QK LPVY K +SG H+ TF +V + + SG GA SKK AE +A
Sbjct: 177 YKTQLQEYSQKHFKTLPVYRMKGESGPDHSKTFQVSVRIRDQWEASGYGA-SKKIAEQNA 235
Query: 89 AKVAYMRLK 97
AK Y+R++
Sbjct: 236 AKELYIRIR 244
>sp|Q9ZBQ7|RNC_STRCO Ribonuclease 3 OS=Streptomyces coelicolor (strain ATCC BAA-471 /
A3(2) / M145) GN=rnc PE=1 SV=2
Length = 276
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 185 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 244
Query: 91 VAYMRLK 97
A+ ++
Sbjct: 245 SAWRSIR 251
>sp|Q2GIW0|RNC_ANAPZ Ribonuclease 3 OS=Anaplasma phagocytophilum (strain HZ) GN=rnc PE=3
SV=1
Length = 236
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 32 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
K LQE AQ +A+P Y +SG HAP F V V G+ G K KK AE++AAK
Sbjct: 166 KTALQEWAQGHNFAIPSYRLINKSGLEHAPVFTVEVTVNGQRVHATGCK-KKYAEIAAAK 224
Query: 91 VAYMRLKEPN 100
+ ++ + N
Sbjct: 225 LMLEKVTKQN 234
>sp|Q660G7|RNC_BORGA Ribonuclease 3 OS=Borrelia garinii (strain PBi) GN=rnc PE=3 SV=1
Length = 245
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK++LQE QK+ P Y K+ G H F + VG + S KSKK+AEM AA
Sbjct: 174 YKSLLQEYVQKKYKISPSYKLDKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAA 233
Query: 90 KVAYMRLKEPN 100
+VA +++ N
Sbjct: 234 EVALKAMEDIN 244
>sp|Q0SMF0|RNC_BORAP Ribonuclease 3 OS=Borrelia afzelii (strain PKo) GN=rnc PE=3 SV=1
Length = 245
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK++LQE QK+ P Y K+ G H F + VG + S KSKK+AEM AA
Sbjct: 174 YKSLLQEYVQKKYKISPNYKLDKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAA 233
Query: 90 KVAYMRLKEPN 100
+VA +++ N
Sbjct: 234 EVALKAMEDIN 244
>sp|Q82JT9|RNC_STRAW Ribonuclease 3 OS=Streptomyces avermitilis (strain ATCC 31267 / DSM
46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680)
GN=rnc PE=3 SV=1
Length = 276
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 175 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 234
Query: 91 VAYMRLK 97
A+ ++
Sbjct: 235 SAWRAIR 241
>sp|O51648|RNC_BORBU Ribonuclease 3 OS=Borrelia burgdorferi (strain ATCC 35210 / B31 /
CIP 102532 / DSM 4680) GN=rnc PE=3 SV=2
Length = 245
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK++LQE QK+ P Y K+ G H F + VG S KSKK+AEM AA
Sbjct: 174 YKSLLQEYVQKKYKISPSYKLDKEIGPDHDKVFCVELYVGENFISNGKGKSKKEAEMRAA 233
Query: 90 KVAYMRLKEPN 100
+VA ++ N
Sbjct: 234 EVALKAMENIN 244
>sp|Q053L4|RNC_LEPBL Ribonuclease 3 OS=Leptospira borgpetersenii serovar Hardjo-bovis
(strain L550) GN=rnc PE=3 SV=1
Length = 247
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 31 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEV-FSGQGAKSKKQAEMSA 88
YK LQE +QK LPVY K +SG H+ F +V + + SG GA SKK AE +A
Sbjct: 177 YKTQLQEYSQKHFKTLPVYRMKGESGPDHSKMFQVSVRIRDQWEASGYGA-SKKIAEQNA 235
Query: 89 AKVAYMRLK 97
AK Y+R++
Sbjct: 236 AKELYIRIR 244
>sp|Q3ZXY9|RNC_DEHSC Ribonuclease 3 OS=Dehalococcoides sp. (strain CBDB1) GN=rnc PE=3
SV=1
Length = 237
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 31 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK+ LQEL Q + P Y T SG H F++ V VF+ +SKK+AE +AA
Sbjct: 161 YKSRLQELIQAQLQLTPRYRITNFSGPEHNRLFIAEVYAEDRVFAEGSGRSKKEAETNAA 220
Query: 90 KVA 92
KVA
Sbjct: 221 KVA 223
>sp|B2UTG4|RNC_HELPS Ribonuclease 3 OS=Helicobacter pylori (strain Shi470) GN=rnc PE=3
SV=1
Length = 238
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 154 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 206
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 207 QDKIYATAKGKSKKEAEQQCAYQALQKLKE 236
>sp|Q9NS39|RED2_HUMAN Double-stranded RNA-specific editase B2 OS=Homo sapiens GN=ADARB2
PE=1 SV=1
Length = 739
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 87
SV KN L +L + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 123 SVAPKNALVQLHELRP-GLQYRTVSQTGPVHAPVFAVAVEVNGLTFEGTG-PTKKKAKMR 180
Query: 88 AAKVAYMRLKE-PNPSQ-------GPALVSPDIQAQADYSSSSLQ 124
AA++A + PN Q GP + QAD+ + Q
Sbjct: 181 AAELALRSFVQFPNACQAHLAMGGGPGPGTDFTSDQADFPDTLFQ 225
>sp|Q1D5X9|RNC_MYXXD Ribonuclease 3 OS=Myxococcus xanthus (strain DK 1622) GN=rnc PE=3
SV=1
Length = 260
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK +LQE+A + P Y +SG H+ F + +G F+ +SKK+AE SAA
Sbjct: 173 YKTLLQEMAHERLKLQPRYRVVSESGPEHSKVFEVELMLGETAFARATGRSKKEAEQSAA 232
Query: 90 KVAYMRLKE 98
+ +L+E
Sbjct: 233 QATLEKLRE 241
>sp|C4K1R3|RNC_RICPU Ribonuclease 3 OS=Rickettsia peacockii (strain Rustic) GN=rnc PE=3
SV=1
Length = 227
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 32 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
K LQE AQ + LP+Y K+ G SHA TF V+V +G G + K+AE +AA+
Sbjct: 160 KTALQEWAQASDHHLPIYRLIKREGASHASTFTVLVKVKDYEQTGTG-HAIKEAEKNAAR 218
Query: 91 VAYMRLK 97
RLK
Sbjct: 219 SLLHRLK 225
>sp|Q6MLR5|RNC_BDEBA Ribonuclease 3 OS=Bdellovibrio bacteriovorus (strain ATCC 15356 /
DSM 50701 / NCIB 9529 / HD100) GN=rnc PE=3 SV=1
Length = 234
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Query: 2 LEKQIELLRSMQRSQ---LSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGES 57
L+ E+ RS R + L+ ED YK LQEL QK + P Y + G
Sbjct: 131 LDGGFEVARSFIRQEFVPLADRVCGHEDFERDYKTRLQELVQKSSKETPRYEVLAEEGPP 190
Query: 58 HAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAY-MRLKEPN 100
H F+ V+V +V++ +SKK AE AAK A M+ KE N
Sbjct: 191 HDREFLVCVKVKEDVWAQGRGRSKKNAEQMAAKNALEMKYKETN 234
>sp|A0LGM1|RNC_SYNFM Ribonuclease 3 OS=Syntrophobacter fumaroxidans (strain DSM 10017 /
MPOB) GN=rnc PE=3 SV=1
Length = 242
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK LQEL Q PVY ++ G H TF V + G+V +G KSKK A+ +AA
Sbjct: 168 YKTQLQELTQARYKLTPVYVLDREEGPDHDKTFHMNVVLEGQVLAGGSGKSKKDAQQAAA 227
Query: 90 KVA 92
+ A
Sbjct: 228 EKA 230
>sp|Q8Y691|RNC_LISMO Ribonuclease 3 OS=Listeria monocytogenes serovar 1/2a (strain ATCC
BAA-679 / EGD-e) GN=rnc PE=3 SV=1
Length = 229
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 86
+V YK LQE+ Q++ L Y+ ++G +H F + V V G+V ++KKQAE
Sbjct: 157 TVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQ 216
Query: 87 SAAKVAYMRL 96
SAA+ A +L
Sbjct: 217 SAAQFAINKL 226
>sp|P56118|RNC_HELPY Ribonuclease 3 OS=Helicobacter pylori (strain ATCC 700392 / 26695)
GN=rnc PE=3 SV=2
Length = 239
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y K+ G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYQALQKLKE 237
>sp|Q1RHA2|RNC_RICBR Ribonuclease 3 OS=Rickettsia bellii (strain RML369-C) GN=rnc PE=3
SV=1
Length = 227
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 32 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
K LQE AQ + + +P+Y K+ G +H TF +V++ G +G+G S K+AE +AA+
Sbjct: 160 KTALQEWAQSKDHHIPIYRLIKREGVAHLSTFTVSVKINGYEQTGKG-HSIKEAEKNAAR 218
Query: 91 VAYMRLK 97
+LK
Sbjct: 219 ELLHKLK 225
>sp|A8GYE2|RNC_RICB8 Ribonuclease 3 OS=Rickettsia bellii (strain OSU 85-389) GN=rnc PE=3
SV=1
Length = 227
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 32 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 90
K LQE AQ + + +P+Y K+ G +H TF +V++ G +G+G S K+AE +AA+
Sbjct: 160 KTALQEWAQSKDHHIPIYRLIKREGVAHLSTFTVSVKINGYEQTGKG-HSIKEAEKNAAR 218
Query: 91 VAYMRLK 97
+LK
Sbjct: 219 ELLHKLK 225
>sp|C5D8T6|RNC_GEOSW Ribonuclease 3 OS=Geobacillus sp. (strain WCH70) GN=rnc PE=3 SV=1
Length = 246
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
+K+ LQEL Q++ + Y+ ++ G +H FVS V + G+ KSKK+AE AA
Sbjct: 174 FKSQLQELVQRDGIGVLEYSILEEKGPAHNKEFVSRVSLNGQELGIGVGKSKKEAEQHAA 233
Query: 90 KVAYMRLK 97
++A +LK
Sbjct: 234 QMALQKLK 241
>sp|A0AJR0|RNC_LISW6 Ribonuclease 3 OS=Listeria welshimeri serovar 6b (strain ATCC 35897
/ DSM 20650 / SLCC5334) GN=rnc PE=3 SV=1
Length = 229
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 86
+V YK LQE+ Q++ L Y+ ++G +H F + V V G+V ++KKQAE
Sbjct: 157 TVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQ 216
Query: 87 SAAKVAYMRL 96
SAA+ A +L
Sbjct: 217 SAAQFAINQL 226
>sp|B7GGE9|RNC_ANOFW Ribonuclease 3 OS=Anoxybacillus flavithermus (strain DSM 21510 /
WK1) GN=rnc PE=3 SV=1
Length = 238
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 31 YKNVLQELAQKEAYALPVYNTKQS-GESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 89
YK+ LQE Q++ + Y Q G +H FVS V + GE +SKK+AE AA
Sbjct: 166 YKSQLQEFVQRDGSGVLEYKILQERGPAHNKEFVSRVSLNGEELGVGVGRSKKEAEQRAA 225
Query: 90 KVAYMRLKE 98
++A +LK+
Sbjct: 226 QMALAKLKQ 234
>sp|B5Z735|RNC_HELPG Ribonuclease 3 OS=Helicobacter pylori (strain G27) GN=rnc PE=3 SV=1
Length = 239
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 10 RSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEV 68
R+ +R L +F + YK LQEL Q + +P Y Q G H F + +
Sbjct: 155 RAYKRLDLEHLFMD-------YKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYI 207
Query: 69 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98
++++ KSKK+AE A A +LKE
Sbjct: 208 QDKMYATAKGKSKKEAEQQCAYYALQKLKE 237
>sp|B8DDU8|RNC_LISMH Ribonuclease 3 OS=Listeria monocytogenes serotype 4a (strain HCC23)
GN=rnc PE=3 SV=1
Length = 229
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 86
+V YK LQE+ Q++ L Y+ ++G +H F + V V G+V ++KKQAE
Sbjct: 157 TVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQ 216
Query: 87 SAAKVAYMRL 96
SAA+ A +L
Sbjct: 217 SAAQFAINQL 226
>sp|Q71YL2|RNC_LISMF Ribonuclease 3 OS=Listeria monocytogenes serotype 4b (strain F2365)
GN=rnc PE=3 SV=1
Length = 229
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 86
+V YK LQE+ Q++ L Y+ ++G +H F + V V G+V ++KKQAE
Sbjct: 157 TVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQ 216
Query: 87 SAAKVAYMRL 96
SAA+ A +L
Sbjct: 217 SAAQFAINQL 226
>sp|C1KWA4|RNC_LISMC Ribonuclease 3 OS=Listeria monocytogenes serotype 4b (strain
CLIP80459) GN=rnc PE=3 SV=1
Length = 229
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 86
+V YK LQE+ Q++ L Y+ ++G +H F + V V G+V ++KKQAE
Sbjct: 157 TVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQ 216
Query: 87 SAAKVAYMRL 96
SAA+ A +L
Sbjct: 217 SAAQFAINQL 226
>sp|Q92AK3|RNC_LISIN Ribonuclease 3 OS=Listeria innocua serovar 6a (strain CLIP 11262)
GN=rnc PE=3 SV=1
Length = 229
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 28 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 86
+V YK LQE+ Q++ L Y+ ++G +H F + V V G+V ++KKQAE
Sbjct: 157 TVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQ 216
Query: 87 SAAKVAYMRL 96
SAA+ A +L
Sbjct: 217 SAAQFAINQL 226
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.124 0.344
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,113,692
Number of Sequences: 539616
Number of extensions: 3538107
Number of successful extensions: 8786
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 219
Number of HSP's that attempted gapping in prelim test: 8506
Number of HSP's gapped (non-prelim): 434
length of query: 261
length of database: 191,569,459
effective HSP length: 115
effective length of query: 146
effective length of database: 129,513,619
effective search space: 18908988374
effective search space used: 18908988374
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)