Query 024888
Match_columns 261
No_of_seqs 155 out of 1080
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 16:11:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024888.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024888hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3adg_A F21M12.9 protein; HYL1, 99.9 1.3E-21 4.5E-26 145.2 10.3 70 28-97 2-72 (73)
2 3adj_A F21M12.9 protein; HYL1, 99.9 1.3E-21 4.5E-26 146.5 8.7 70 29-98 4-74 (76)
3 3adl_A RISC-loading complex su 99.8 7.8E-21 2.7E-25 146.9 9.9 74 25-99 11-85 (88)
4 1di2_A XLRBPA, double stranded 99.8 4.7E-21 1.6E-25 140.6 8.3 67 30-97 1-68 (69)
5 1qu6_A Protein kinase PKR; dsR 99.8 3.5E-21 1.2E-25 164.5 7.5 134 27-167 11-172 (179)
6 2khx_A Ribonuclease 3; drosha, 99.8 6.5E-21 2.2E-25 146.3 8.1 71 29-99 1-77 (85)
7 2cpn_A TAR RNA-binding protein 99.8 1.5E-20 5E-25 145.5 9.9 71 27-98 14-85 (89)
8 1uhz_A Staufen (RNA binding pr 99.8 1.9E-20 6.5E-25 144.8 9.8 71 27-98 4-75 (89)
9 1o0w_A Ribonuclease III, RNAse 99.8 1.6E-20 5.3E-25 168.1 10.6 99 1-99 149-250 (252)
10 1ekz_A DSRBDIII, maternal effe 99.8 5.7E-21 1.9E-25 142.8 5.8 70 27-98 5-75 (76)
11 2nug_A Ribonuclease III, RNAse 99.8 1.2E-20 4E-25 165.4 8.2 97 1-98 117-219 (221)
12 2dix_A Interferon-inducible do 99.8 3.5E-20 1.2E-24 141.6 8.8 70 27-98 6-76 (84)
13 2l2n_A Hyponastic leave 1; DSR 99.8 4E-20 1.4E-24 146.5 8.8 75 25-99 13-88 (103)
14 3llh_A RISC-loading complex su 99.8 6.9E-20 2.4E-24 141.6 8.8 72 26-99 11-83 (90)
15 3n3w_A Ribonuclease III; nucle 99.8 3.7E-21 1.3E-25 172.5 1.6 98 1-98 147-247 (248)
16 1x49_A Interferon-induced, dou 99.8 7.2E-20 2.5E-24 143.7 8.4 73 27-100 12-85 (97)
17 2b7t_A Double-stranded RNA-spe 99.8 8E-20 2.7E-24 135.7 7.5 68 28-98 3-71 (73)
18 1whq_A RNA helicase A; double- 99.8 5.9E-20 2E-24 144.8 6.3 71 28-99 5-76 (99)
19 1x47_A DGCR8 protein; structur 99.8 3.6E-19 1.2E-23 139.9 10.8 76 27-104 14-90 (98)
20 1t4n_A Ribonuclease III; DSRBD 99.8 3.6E-20 1.2E-24 145.4 4.9 71 26-97 3-74 (94)
21 1x48_A Interferon-induced, dou 99.8 2.4E-19 8.3E-24 138.3 9.0 70 28-99 5-75 (88)
22 2a11_A Ribonuclease III, RNAse 99.8 1.3E-20 4.3E-25 167.2 1.4 99 1-99 132-232 (242)
23 2dmy_A Spermatid perinuclear R 99.8 6.3E-19 2.2E-23 138.2 9.5 71 26-99 13-84 (97)
24 1uil_A Double-stranded RNA-bin 99.8 4.2E-19 1.4E-23 142.9 8.2 70 29-99 26-100 (113)
25 2ljh_A Double-stranded RNA-spe 99.8 1E-18 3.4E-23 141.4 8.9 77 26-108 34-111 (114)
26 1t4o_A Ribonuclease III; RNT1P 99.8 4E-19 1.4E-23 144.5 6.3 70 27-97 6-76 (117)
27 1whn_A Hypothetical protein ri 99.8 4.9E-18 1.7E-22 139.8 12.4 74 27-102 24-98 (128)
28 2l33_A Interleukin enhancer-bi 99.7 1.9E-18 6.7E-23 134.6 7.8 70 28-100 13-83 (91)
29 2yt4_A Protein DGCR8; DSRBD, R 99.7 8.5E-18 2.9E-22 149.7 11.0 136 27-167 20-198 (232)
30 2b7v_A Double-stranded RNA-spe 99.7 2.1E-17 7.3E-22 121.8 7.9 66 27-98 2-68 (71)
31 3p1x_A Interleukin enhancer-bi 99.6 2.6E-16 8.9E-21 117.7 7.9 65 32-99 7-72 (75)
32 2l3j_A Double-stranded RNA-spe 99.6 2.2E-15 7.5E-20 134.2 11.5 68 28-98 3-71 (236)
33 3rv0_A K. polysporus DCR1; RNA 99.6 6.9E-17 2.4E-21 151.4 1.2 97 1-102 217-324 (341)
34 1qu6_A Protein kinase PKR; dsR 99.5 3.8E-15 1.3E-19 127.1 6.3 93 7-100 71-174 (179)
35 2l3j_A Double-stranded RNA-spe 99.5 4.8E-14 1.7E-18 125.5 9.2 65 28-98 160-225 (236)
36 3c4b_A Endoribonuclease dicer; 99.5 4.1E-14 1.4E-18 126.5 5.4 93 1-98 169-263 (265)
37 2yt4_A Protein DGCR8; DSRBD, R 99.4 1.6E-13 5.6E-18 122.0 6.3 68 28-99 129-199 (232)
38 2qvw_A GLP_546_48378_50642; di 96.3 0.00073 2.5E-08 69.2 0.4 70 1-99 416-498 (756)
39 2kou_A Dicer-like protein 4; A 94.3 0.078 2.7E-06 41.3 5.8 70 29-100 4-82 (102)
40 3htx_A HEN1; HEN1, small RNA m 93.7 0.11 3.6E-06 54.5 7.1 70 29-102 17-99 (950)
41 3adg_A F21M12.9 protein; HYL1, 86.6 0.31 1.1E-05 35.0 2.1 49 116-164 21-70 (73)
42 1x47_A DGCR8 protein; structur 84.6 0.39 1.3E-05 36.9 1.8 51 116-167 34-84 (98)
43 1uil_A Double-stranded RNA-bin 84.2 0.45 1.5E-05 37.5 2.1 55 116-170 43-102 (113)
44 3p1x_A Interleukin enhancer-bi 83.9 0.27 9.3E-06 35.8 0.6 54 115-169 19-73 (75)
45 2b7t_A Double-stranded RNA-spe 81.9 0.23 8E-06 35.8 -0.4 49 115-164 19-68 (73)
46 2db2_A KIAA0890 protein; DSRM 81.0 1.9 6.6E-05 34.7 4.6 68 27-98 15-89 (119)
47 3adj_A F21M12.9 protein; HYL1, 80.0 0.77 2.6E-05 33.3 1.9 50 116-165 22-72 (76)
48 2l2n_A Hyponastic leave 1; DSR 79.8 0.84 2.9E-05 35.3 2.1 53 115-167 34-87 (103)
49 2khx_A Ribonuclease 3; drosha, 79.7 0.69 2.4E-05 34.6 1.5 52 115-166 23-75 (85)
50 1whq_A RNA helicase A; double- 77.6 0.58 2E-05 36.1 0.5 46 115-166 22-74 (99)
51 2dix_A Interferon-inducible do 74.8 1 3.6E-05 33.3 1.3 50 116-166 25-75 (84)
52 1whn_A Hypothetical protein ri 74.0 1.4 4.7E-05 35.6 1.9 48 116-165 44-92 (128)
53 2ljh_A Double-stranded RNA-spe 73.7 0.93 3.2E-05 36.0 0.8 49 116-165 50-99 (114)
54 1di2_A XLRBPA, double stranded 73.4 0.71 2.4E-05 32.6 0.1 49 115-164 17-66 (69)
55 1ekz_A DSRBDIII, maternal effe 73.2 0.92 3.1E-05 32.7 0.6 48 116-164 24-72 (76)
56 2b7v_A Double-stranded RNA-spe 71.9 0.83 2.8E-05 32.5 0.1 50 115-165 16-66 (71)
57 1x49_A Interferon-induced, dou 70.2 2.3 7.8E-05 32.5 2.3 28 139-166 49-82 (97)
58 1t4n_A Ribonuclease III; DSRBD 69.2 1.3 4.3E-05 34.3 0.6 18 147-164 55-72 (94)
59 2l33_A Interleukin enhancer-bi 69.2 0.99 3.4E-05 34.4 0.0 52 115-167 29-81 (91)
60 2dmy_A Spermatid perinuclear R 68.8 1.2 4.2E-05 33.9 0.5 50 115-165 31-81 (97)
61 3llh_A RISC-loading complex su 65.8 1.2 4.1E-05 33.4 -0.1 23 145-167 60-82 (90)
62 2cpn_A TAR RNA-binding protein 65.1 1.4 4.8E-05 33.1 0.1 49 116-165 34-83 (89)
63 3adl_A RISC-loading complex su 63.3 1.6 5.4E-05 32.8 0.1 21 145-165 62-82 (88)
64 1uhz_A Staufen (RNA binding pr 59.0 2.1 7.2E-05 32.1 0.1 49 116-165 24-73 (89)
65 1t4o_A Ribonuclease III; RNT1P 58.4 2.5 8.4E-05 33.9 0.5 18 147-164 57-74 (117)
66 1x48_A Interferon-induced, dou 51.5 2.9 0.0001 31.2 -0.2 18 148-165 55-72 (88)
67 2a11_A Ribonuclease III, RNAse 47.9 3.8 0.00013 35.4 0.0 53 115-167 179-231 (242)
68 1o0w_A Ribonuclease III, RNAse 39.6 6.8 0.00023 34.2 0.3 52 115-166 196-248 (252)
69 2nug_A Ribonuclease III, RNAse 30.2 11 0.00038 32.0 0.1 50 115-165 167-217 (221)
70 3n3w_A Ribonuclease III; nucle 29.0 12 0.0004 32.8 0.0 51 115-165 194-245 (248)
71 2eki_A DRG 1, developmentally- 28.6 21 0.00072 27.4 1.4 23 223-245 8-39 (93)
72 3hvz_A Uncharacterized protein 27.9 17 0.00057 26.7 0.7 21 225-245 6-27 (78)
73 1nh8_A ATP phosphoribosyltrans 23.1 40 0.0014 30.9 2.4 17 240-256 255-272 (304)
No 1
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=99.86 E-value=1.3e-21 Score=145.20 Aligned_cols=70 Identities=40% Similarity=0.475 Sum_probs=66.3
Q ss_pred CCChHHHHHHHHHHcCCCCCcEEecccCCCCCCcEEEEEEECCEEeecccC-CCHHHHHHHHHHHHHHHhh
Q 024888 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGA-KSKKQAEMSAAKVAYMRLK 97 (261)
Q Consensus 28 ~~n~KS~LQEl~Qk~~~~~P~Y~~~~sGp~H~~~Ftv~V~V~g~~~g~G~G-~SKKeAEq~AAk~AL~~L~ 97 (261)
..|||+.||||||++++.+|.|++..+||+|.+.|+|.|.|+|..++.|.| +|||+|||+||+.||+.|.
T Consensus 2 ~~d~Kt~LqE~~q~~~~~~p~Y~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~~sKK~Aeq~AA~~al~~L~ 72 (73)
T 3adg_A 2 SHVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELA 72 (73)
T ss_dssp CCSHHHHHHHHHHHTTCCCCEEEEEEESSTTSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcCCCCCEEEEEeECCCCCCeEEEEEEECCEEEEeeeccCCHHHHHHHHHHHHHHHhh
Confidence 479999999999999999999998556999999999999999999999999 9999999999999999885
No 2
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=99.85 E-value=1.3e-21 Score=146.51 Aligned_cols=70 Identities=40% Similarity=0.640 Sum_probs=66.8
Q ss_pred CChHHHHHHHHHHcCCCCCcEEe-cccCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhhC
Q 024888 29 VLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98 (261)
Q Consensus 29 ~n~KS~LQEl~Qk~~~~~P~Y~~-~~sGp~H~~~Ftv~V~V~g~~~g~G~G~SKKeAEq~AAk~AL~~L~~ 98 (261)
.|||+.||||||++++.+|.|++ ..+||+|.+.|+|.|.|+|..++.|.|+|||+|||+||+.||+.|..
T Consensus 4 ~n~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~ 74 (76)
T 3adj_A 4 GLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQS 74 (76)
T ss_dssp HHHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEEEECCCBSSHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHHHhh
Confidence 58999999999999999999998 67899999999999999999999999999999999999999999874
No 3
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=99.84 E-value=7.8e-21 Score=146.85 Aligned_cols=74 Identities=27% Similarity=0.309 Sum_probs=68.3
Q ss_pred cCCCCChHHHHHHHHHHcCCCCCcEEe-cccCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhhCC
Q 024888 25 EDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP 99 (261)
Q Consensus 25 ~~~~~n~KS~LQEl~Qk~~~~~P~Y~~-~~sGp~H~~~Ftv~V~V~g~~~g~G~G~SKKeAEq~AAk~AL~~L~~~ 99 (261)
.....|||+.||||||++++.+|.|++ ..+||+|.+.|+|.|.|+|. ++.|.|+|||+|||+||+.||+.|...
T Consensus 11 ~~~~~d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 85 (88)
T 3adl_A 11 VPRGSHEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVHTV 85 (88)
T ss_dssp CCTTCCHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHHcc
Confidence 445689999999999999999999998 67899999999999999998 999999999999999999999999753
No 4
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=99.84 E-value=4.7e-21 Score=140.59 Aligned_cols=67 Identities=30% Similarity=0.376 Sum_probs=63.9
Q ss_pred ChHHHHHHHHHHcCCCCCcEEe-cccCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhh
Q 024888 30 LYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 97 (261)
Q Consensus 30 n~KS~LQEl~Qk~~~~~P~Y~~-~~sGp~H~~~Ftv~V~V~g~~~g~G~G~SKKeAEq~AAk~AL~~L~ 97 (261)
.||+.||||||++++.+|.|++ ..+||+|.+.|+|.|.|+|. ++.|.|+|||+|||.||+.||+.|.
T Consensus 1 ~p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G~sKK~Aeq~AA~~al~~L~ 68 (69)
T 1di2_A 1 MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF-VETGSGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp CHHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEeecCCHHHHHHHHHHHHHHHHh
Confidence 4899999999999999999998 67899999999999999998 9999999999999999999999986
No 5
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=99.83 E-value=3.5e-21 Score=164.54 Aligned_cols=134 Identities=19% Similarity=0.242 Sum_probs=96.7
Q ss_pred CCCChHHHHHHHHHHcCCCCCcEEe-cccCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhhCCCCCCCC
Q 024888 27 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGP 105 (261)
Q Consensus 27 ~~~n~KS~LQEl~Qk~~~~~P~Y~~-~~sGp~H~~~Ftv~V~V~g~~~g~G~G~SKKeAEq~AAk~AL~~L~~~~~~~~~ 105 (261)
...|||+.||||||++++. |.|++ ..+||+|.+.|++.|.|+|..++.|.|+|||+|||+||+.||+.|.........
T Consensus 11 ~~~n~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~~~~~~~p 89 (179)
T 1qu6_A 11 SAGFFMEELNTYRQKQGVV-LKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILNKEKKAVSP 89 (179)
T ss_dssp SSCSHHHHHHHHHHHHTCC-CEEEEEESCBTTTBCCEEEEEESSSSCCCEEECCSSHHHHHHHHHHHHHHHHSCCSCCSC
T ss_pred CCCCHHHHHHHHHHhCCCC-CeEEEeeccCCCCCCeEEEEEEECCEEEEecCCCCHHHHHHHHHHHHHHHHhcccccCCC
Confidence 3479999999999999986 89998 578999999999999999998999999999999999999999999864321110
Q ss_pred C--ccC----------C---------CcccCccccccccCcCccccccccccccceeecCCCCC------CcchHHHHhh
Q 024888 106 A--LVS----------P---------DIQAQADYSSSSLQSNVTADLHHNIQTAGRLVFNPNSM------PKVQAEEIRE 158 (261)
Q Consensus 106 ~--~~~----------~---------~~~~~p~ft~~~~~~~~t~~~~~~~~~~~~~~~~~~~~------~kk~aee~~a 158 (261)
. .+. + -+...++|.......+....|. +.|.+++..| +||+|++.||
T Consensus 90 ~~~~~~~~~e~~~~~n~~~~L~E~~qk~~~~~~Y~~~~~G~~h~~~F~------~~v~v~~~~~~~g~g~sKK~Ak~~AA 163 (179)
T 1qu6_A 90 LLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQCASGVHGPEGFH------YKCKMGQKEYSIGTGSTKQEAKQLAA 163 (179)
T ss_dssp SSCCCSCSSCCCCCCCCHHHHHHHHHHSCCEEEEEEEEECSSSSSEEE------EEEEEETTBCCEEEESSHHHHHHHHH
T ss_pred ccCCCCCcccccCCCCHHHHHHHHHHhcCCcceEEecCcCCCCCCeEE------EEEEECCEEEeeEEECCHHHHHHHHH
Confidence 0 000 0 0001145554322222222232 3444555444 4999999999
Q ss_pred hcccccccc
Q 024888 159 LTTVNTEVA 167 (261)
Q Consensus 159 ~~~~~~~~~ 167 (261)
..++..+..
T Consensus 164 ~~al~~L~~ 172 (179)
T 1qu6_A 164 KLAYLQILS 172 (179)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999998766
No 6
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=99.83 E-value=6.5e-21 Score=146.32 Aligned_cols=71 Identities=32% Similarity=0.321 Sum_probs=65.6
Q ss_pred CChHHHHHHHHHHc-----CCCCCcEEe-cccCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhhCC
Q 024888 29 VLYKNVLQELAQKE-----AYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP 99 (261)
Q Consensus 29 ~n~KS~LQEl~Qk~-----~~~~P~Y~~-~~sGp~H~~~Ftv~V~V~g~~~g~G~G~SKKeAEq~AAk~AL~~L~~~ 99 (261)
+|||+.||||||++ ++..|.|++ ..+||+|.+.|+|.|.|+|..++.|.|+|||+|||+||+.||+.|...
T Consensus 1 ~d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~G~G~SKK~AEq~AA~~AL~~L~~~ 77 (85)
T 2khx_A 1 NDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNFP 77 (85)
T ss_dssp CCSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECCCEEESSHHHHHHHHHHHHHTTCCSS
T ss_pred CCHHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhHh
Confidence 58999999999984 677899998 678999999999999999999999999999999999999999988654
No 7
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.83 E-value=1.5e-20 Score=145.47 Aligned_cols=71 Identities=28% Similarity=0.338 Sum_probs=67.2
Q ss_pred CCCChHHHHHHHHHHcCCCCCcEEe-cccCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhhC
Q 024888 27 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98 (261)
Q Consensus 27 ~~~n~KS~LQEl~Qk~~~~~P~Y~~-~~sGp~H~~~Ftv~V~V~g~~~g~G~G~SKKeAEq~AAk~AL~~L~~ 98 (261)
...|||+.||||||++++.+|.|++ ..+||+|.+.|+|.|+|+|. ++.|.|+|||+|||.||+.||+.|..
T Consensus 14 ~~~d~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~ 85 (89)
T 2cpn_A 14 SECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVSG 85 (89)
T ss_dssp CCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCE-EEEeeeCCHHHHHHHHHHHHHHHHHh
Confidence 3689999999999999999999998 67899999999999999998 99999999999999999999999974
No 8
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.83 E-value=1.9e-20 Score=144.83 Aligned_cols=71 Identities=25% Similarity=0.251 Sum_probs=66.8
Q ss_pred CCCChHHHHHHHHHHcCCCCCcEEe-cccCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhhC
Q 024888 27 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98 (261)
Q Consensus 27 ~~~n~KS~LQEl~Qk~~~~~P~Y~~-~~sGp~H~~~Ftv~V~V~g~~~g~G~G~SKKeAEq~AAk~AL~~L~~ 98 (261)
...|||+.||||||++++.+|.|++ ..+||+|.+.|+|.|.|+|. ++.|.|+|||+|||+||+.||+.|..
T Consensus 4 ~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~ 75 (89)
T 1uhz_A 4 GSSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE-VATGTGPNKKIAKKNAAEAMLLQLGY 75 (89)
T ss_dssp SSSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHhc
Confidence 3579999999999999999999998 67899999999999999996 89999999999999999999999974
No 9
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=99.83 E-value=1.6e-20 Score=168.10 Aligned_cols=99 Identities=25% Similarity=0.378 Sum_probs=89.5
Q ss_pred CchhcHHHHHHHHHHHHhhhhcccc--CCCCChHHHHHHHHHHcCCCCCcEEe-cccCCCCCCcEEEEEEECCEEeeccc
Q 024888 1 MLEKQIELLRSMQRSQLSMMFTNQE--DDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQG 77 (261)
Q Consensus 1 ~LD~Gle~ar~fV~kll~~~l~~~~--~~~~n~KS~LQEl~Qk~~~~~P~Y~~-~~sGp~H~~~Ftv~V~V~g~~~g~G~ 77 (261)
|||+|++.+++||.++|.+.+.... ....|||+.||||||++++..|.|++ ..+||+|.+.|+|.|.|+|..++.|.
T Consensus 149 yld~g~~~~~~~i~~~~~~~~~~~~~~~~~~dpkt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~ 228 (252)
T 1o0w_A 149 YLDQGYEKIKELFEQEFEFYIEKIMKGEMLFDYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGK 228 (252)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEE
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHhhhcccccCHHHHHHHHHHHcCCCCceEEEEeeeCCCCCCeEEEEEEECCEEEEEEe
Confidence 6899999999999999998877643 24679999999999999999999998 57899999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhCC
Q 024888 78 AKSKKQAEMSAAKVAYMRLKEP 99 (261)
Q Consensus 78 G~SKKeAEq~AAk~AL~~L~~~ 99 (261)
|.|||+|||.||+.||+.|...
T Consensus 229 G~SKK~Aeq~AA~~AL~~L~~~ 250 (252)
T 1o0w_A 229 GRTKKEAEKEAARIAYEKLLKE 250 (252)
T ss_dssp ESSHHHHHHHHHHHHHHHHC--
T ss_pred eCCHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999754
No 10
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=99.82 E-value=5.7e-21 Score=142.75 Aligned_cols=70 Identities=19% Similarity=0.323 Sum_probs=65.9
Q ss_pred CCCChHHHHHHHHHHcCCCCCcEEe-cccCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhhC
Q 024888 27 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98 (261)
Q Consensus 27 ~~~n~KS~LQEl~Qk~~~~~P~Y~~-~~sGp~H~~~Ftv~V~V~g~~~g~G~G~SKKeAEq~AAk~AL~~L~~ 98 (261)
...|||+.||||||++++. |.|++ ..+||+|.+.|+|.|.|+| .++.|.|+|||+|||.||+.||+.|..
T Consensus 5 ~~~d~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~-~~~~G~G~sKK~Aeq~AA~~aL~~L~~ 75 (76)
T 1ekz_A 5 DKKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGS-IVTEGEGNGKKVSKKRAAEKMLVELQK 75 (76)
T ss_dssp CCSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETT-EEEEECCCSTTSSSHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHcCCC-CEEEEEEeECCCCCCcEEEEEEECC-EEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence 4689999999999999998 99998 6789999999999999999 889999999999999999999999864
No 11
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=99.82 E-value=1.2e-20 Score=165.37 Aligned_cols=97 Identities=24% Similarity=0.232 Sum_probs=88.1
Q ss_pred CchhcHHH--HHHHHHHHHhhhhc-ccc--CCCCChHHHHHHHHHHcCCCCCcEEe-cccCCCCCCcEEEEEEECCEEee
Q 024888 1 MLEKQIEL--LRSMQRSQLSMMFT-NQE--DDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFS 74 (261)
Q Consensus 1 ~LD~Gle~--ar~fV~kll~~~l~-~~~--~~~~n~KS~LQEl~Qk~~~~~P~Y~~-~~sGp~H~~~Ftv~V~V~g~~~g 74 (261)
|||+|++. +++||.+++.+.+. .+. ....|||+.||||||++++..|.|++ ..+||+|.+.|+|.|.|+|. ++
T Consensus 117 yld~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~~-~~ 195 (221)
T 2nug_A 117 YIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RT 195 (221)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE-EE
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHhhhhhccccccCHHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEECCE-EE
Confidence 58999999 99999999988777 532 33589999999999999999999998 67899999999999999999 99
Q ss_pred cccCCCHHHHHHHHHHHHHHHhhC
Q 024888 75 GQGAKSKKQAEMSAAKVAYMRLKE 98 (261)
Q Consensus 75 ~G~G~SKKeAEq~AAk~AL~~L~~ 98 (261)
.|.|.|||+|||.||+.||+.|..
T Consensus 196 ~G~G~skK~Ae~~AA~~AL~~L~~ 219 (221)
T 2nug_A 196 LGEGKSKKEAEQRAAEELIKLLEE 219 (221)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHC-
T ss_pred EEecCCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999973
No 12
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.82 E-value=3.5e-20 Score=141.60 Aligned_cols=70 Identities=33% Similarity=0.388 Sum_probs=65.4
Q ss_pred CCCChHHHHHHHHHHcCCCCCcEEe-cccCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhhC
Q 024888 27 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98 (261)
Q Consensus 27 ~~~n~KS~LQEl~Qk~~~~~P~Y~~-~~sGp~H~~~Ftv~V~V~g~~~g~G~G~SKKeAEq~AAk~AL~~L~~ 98 (261)
...|||+.||||||+++ ..|.|++ ..+||+|.++|+|.|.|+| .++.|.|+|||+|||+||+.||+.|..
T Consensus 6 ~~~d~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~h~~~F~~~v~v~~-~~~~G~G~SKK~Aeq~AA~~aL~~L~~ 76 (84)
T 2dix_A 6 SGKTPIQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGD-ITCTGEGTSKKLAKHRAAEAAINILKA 76 (84)
T ss_dssp CCCCHHHHHHHHHHHTT-CCCEEEEEEEECSSSSCEEEEEEEETT-EEEEECSSCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcC-CCCeEEEEEeECCCCCCeEEEEEEECC-EEEEeeeCCHHHHHHHHHHHHHHHHhc
Confidence 35899999999999998 6899998 6789999999999999999 889999999999999999999999973
No 13
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=99.81 E-value=4e-20 Score=146.51 Aligned_cols=75 Identities=36% Similarity=0.449 Sum_probs=65.6
Q ss_pred cCCCCChHHHHHHHHHHcCCCCCcEEecccCCCCCCcEEEEEEECCEEeecccC-CCHHHHHHHHHHHHHHHhhCC
Q 024888 25 EDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGA-KSKKQAEMSAAKVAYMRLKEP 99 (261)
Q Consensus 25 ~~~~~n~KS~LQEl~Qk~~~~~P~Y~~~~sGp~H~~~Ftv~V~V~g~~~g~G~G-~SKKeAEq~AAk~AL~~L~~~ 99 (261)
.....|||+.||||||++++.+|.|++..+||+|.+.|++.|.|+|..++.|.| +|||+|||+||+.||+.|...
T Consensus 13 ~~~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~G~G~~SKK~Aeq~AA~~AL~~L~~~ 88 (103)
T 2l2n_A 13 VSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELAKS 88 (103)
T ss_dssp ------CTTHHHHHHHHTTCCCCEEEEEEESCSSSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHcCCCCCeEEEEeEcCCCCCeEEEEEEECCEEEEEeecCCCHHHHHHHHHHHHHHHHhcc
Confidence 345789999999999999999999998656999999999999999999999999 999999999999999999853
No 14
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=99.81 E-value=6.9e-20 Score=141.61 Aligned_cols=72 Identities=33% Similarity=0.411 Sum_probs=59.2
Q ss_pred CCCCChHHHHHHHHHHcCCCCCcEEe-cccCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhhCC
Q 024888 26 DDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP 99 (261)
Q Consensus 26 ~~~~n~KS~LQEl~Qk~~~~~P~Y~~-~~sGp~H~~~Ftv~V~V~g~~~g~G~G~SKKeAEq~AAk~AL~~L~~~ 99 (261)
...+|||+.||||||+++. .|.|++ ..+||+|+++|++.|.|+|. ++.|.|+|||+|||.||+.||+.|...
T Consensus 11 ~~~kd~Ks~LqE~~q~~~~-~p~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~aL~~L~~~ 83 (90)
T 3llh_A 11 NPGKTPISLLQEYGTRIGK-TPVYDLLKAEGQAHQPNFTFRVTVGDT-SCTGQGPSKKAAKHKAAEVALKHLKGG 83 (90)
T ss_dssp --CCCHHHHHHHHHHHTTC-CCEEEEEEEC-----CCEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHC--
T ss_pred ccCCCHHHHHHHHHHhcCC-CCEEEEEEeECCCCCCcEEEEEEECCE-EEEEEeCCHHHHHHHHHHHHHHHHHhc
Confidence 3578999999999999875 799998 68899999999999999997 688999999999999999999999754
No 15
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=99.80 E-value=3.7e-21 Score=172.49 Aligned_cols=98 Identities=28% Similarity=0.328 Sum_probs=20.6
Q ss_pred CchhcHHHHHHHHHHHHhhhhccccC--CCCChHHHHHHHHHHcCCCCCcEEe-cccCCCCCCcEEEEEEECCEEeeccc
Q 024888 1 MLEKQIELLRSMQRSQLSMMFTNQED--DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQG 77 (261)
Q Consensus 1 ~LD~Gle~ar~fV~kll~~~l~~~~~--~~~n~KS~LQEl~Qk~~~~~P~Y~~-~~sGp~H~~~Ftv~V~V~g~~~g~G~ 77 (261)
|||+|++.|++||.++|.+.+..+.. ...|||+.||||||++++..|.|++ ..+||+|.+.|+|.|+|+|..++.|.
T Consensus 147 yld~G~~~~~~~i~~~~~~~l~~~~~~~~~~dpks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~ 226 (248)
T 3n3w_A 147 HLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAI 226 (248)
T ss_dssp HHHHCHHHHHHHHHHHHHHHCC----------------------------------------------------------
T ss_pred HHHCChHHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEee
Confidence 68999999999999999998876443 4689999999999999999999998 57899999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhC
Q 024888 78 AKSKKQAEMSAAKVAYMRLKE 98 (261)
Q Consensus 78 G~SKKeAEq~AAk~AL~~L~~ 98 (261)
|.|||+|||.||+.||+.|..
T Consensus 227 G~SKK~Aeq~AA~~AL~~L~~ 247 (248)
T 3n3w_A 227 AGSKKEAQQMAAKIALEKLGA 247 (248)
T ss_dssp ---------------------
T ss_pred eCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999998864
No 16
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.80 E-value=7.2e-20 Score=143.74 Aligned_cols=73 Identities=27% Similarity=0.338 Sum_probs=67.7
Q ss_pred CCCChHHHHHHHHHHcCCCCCcEEe-cccCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhhCCC
Q 024888 27 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 100 (261)
Q Consensus 27 ~~~n~KS~LQEl~Qk~~~~~P~Y~~-~~sGp~H~~~Ftv~V~V~g~~~g~G~G~SKKeAEq~AAk~AL~~L~~~~ 100 (261)
...|||+.||||||++++. |.|++ ..+||+|.+.|+|.|.|+|..++.|.|+|||+|||.||+.||+.|....
T Consensus 12 ~~~n~Kt~LqE~~Q~~~~~-p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~ 85 (97)
T 1x49_A 12 TPGFYMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILDNEN 85 (97)
T ss_dssp CTTHHHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCCEEESSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHcCCC-CeEEEEEeeCCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHHhhc
Confidence 4589999999999999996 89997 6789999999999999999999999999999999999999999998543
No 17
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=99.80 E-value=8e-20 Score=135.68 Aligned_cols=68 Identities=38% Similarity=0.487 Sum_probs=63.1
Q ss_pred CCChHHHHHHHHHHcCCCCCcEEe-cccCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhhC
Q 024888 28 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98 (261)
Q Consensus 28 ~~n~KS~LQEl~Qk~~~~~P~Y~~-~~sGp~H~~~Ftv~V~V~g~~~g~G~G~SKKeAEq~AAk~AL~~L~~ 98 (261)
..|||+.||||||+ +..|.|++ ..+||+|+++|++.|.|+|..+ .|.|+|||+|||+||+.||+.|.+
T Consensus 3 ~~d~Ks~Lqe~~q~--~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~ 71 (73)
T 2b7t_A 3 PVLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQ 71 (73)
T ss_dssp SSSSHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHcC--CCCceEEEEEeeCCCCCCeEEEEEEECCEEE-EeecCCHHHHHHHHHHHHHHHHhc
Confidence 47999999999996 77899998 6789999999999999999887 899999999999999999999875
No 18
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=99.79 E-value=5.9e-20 Score=144.82 Aligned_cols=71 Identities=25% Similarity=0.259 Sum_probs=66.6
Q ss_pred CCChHHHHHHHHHHcCCCCCcEEecccCCCCCCcEEEEEEECC-EEeecccCCCHHHHHHHHHHHHHHHhhCC
Q 024888 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGG-EVFSGQGAKSKKQAEMSAAKVAYMRLKEP 99 (261)
Q Consensus 28 ~~n~KS~LQEl~Qk~~~~~P~Y~~~~sGp~H~~~Ftv~V~V~g-~~~g~G~G~SKKeAEq~AAk~AL~~L~~~ 99 (261)
..|||+.||||||++ +..|.|++..+||+|.++|+|.|.|+| ..++.|.|+|||+|||+||+.||+.|...
T Consensus 5 ~~d~Kt~LqE~~Qk~-~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 76 (99)
T 1whq_A 5 SSGIKNFLYAWCGKR-KMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRI 76 (99)
T ss_dssp CCSSHHHHHHHHHHT-TCCCEEEEEEEECSSSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHC-CCCCeEEEeeecCCCCCeEEEEEEECCeEEEEEeccCCHHHHHHHHHHHHHHHHHhh
Confidence 479999999999999 889999997789999999999999999 68999999999999999999999999853
No 19
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.79 E-value=3.6e-19 Score=139.87 Aligned_cols=76 Identities=26% Similarity=0.250 Sum_probs=70.2
Q ss_pred CCCChHHHHHHHHHHcCCCCCcEEe-cccCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhhCCCCCCC
Q 024888 27 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQG 104 (261)
Q Consensus 27 ~~~n~KS~LQEl~Qk~~~~~P~Y~~-~~sGp~H~~~Ftv~V~V~g~~~g~G~G~SKKeAEq~AAk~AL~~L~~~~~~~~ 104 (261)
..+|||+.||||||++++.+|.|++ ..+||+ +.|+|.|.|+|..++.|.|+|||+|||+||+.||+.|.....++.
T Consensus 14 ~~kd~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~--~~F~~~V~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~~~~ 90 (98)
T 1x47_A 14 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPDFVKQT 90 (98)
T ss_dssp TCCCHHHHHHHHHHHHTCSCCEEEEEECSSSS--CCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHCSSSSCCC
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEEeECCC--CcEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 5789999999999999999999998 568998 999999999999999999999999999999999999987666654
No 20
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=99.79 E-value=3.6e-20 Score=145.45 Aligned_cols=71 Identities=21% Similarity=0.112 Sum_probs=64.6
Q ss_pred CCCCChHHHHHHHHHHcCCCCCcEEecccCCCCCCcEEEEEEECCE-EeecccCCCHHHHHHHHHHHHHHHhh
Q 024888 26 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGE-VFSGQGAKSKKQAEMSAAKVAYMRLK 97 (261)
Q Consensus 26 ~~~~n~KS~LQEl~Qk~~~~~P~Y~~~~sGp~H~~~Ftv~V~V~g~-~~g~G~G~SKKeAEq~AAk~AL~~L~ 97 (261)
....|||+.||||+|+. ...|.|++..+||+|++.|+|.|.|+|. .++.|.|+|||+|||+||+.||+.|.
T Consensus 3 ~~~~D~KT~LQE~~Q~~-~~~p~Y~v~~~GpdH~k~F~v~v~i~~~~~~g~G~G~SKK~AEQ~AA~~AL~~l~ 74 (94)
T 1t4n_A 3 KLDMNAKRQLYSLIGYA-SLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKK 74 (94)
T ss_dssp SSCHHHHHHHHHHTCSS-SSCCEEEECCCCSSSCCSEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHCHH
T ss_pred CCCCCchHHHHHHHcCC-CCCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 34579999999999997 4689999965699999999999999999 89999999999999999999998775
No 21
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.79 E-value=2.4e-19 Score=138.26 Aligned_cols=70 Identities=26% Similarity=0.427 Sum_probs=65.7
Q ss_pred CCChHHHHHHHHHHcCCCCCcEEecccCCCCCC-cEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhhCC
Q 024888 28 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAP-TFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP 99 (261)
Q Consensus 28 ~~n~KS~LQEl~Qk~~~~~P~Y~~~~sGp~H~~-~Ftv~V~V~g~~~g~G~G~SKKeAEq~AAk~AL~~L~~~ 99 (261)
..|||+.||||||++++.+ .|+ ..+||+|.+ +|+|.|.|+|..++.|.|+|||+|||.||+.||+.|...
T Consensus 5 ~~d~Kt~LqE~~Q~~~~~~-~Y~-~~~Gp~H~~~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 75 (88)
T 1x48_A 5 SSGYIGLVNSFAQKKKLSV-NYE-QCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKS 75 (88)
T ss_dssp SSCHHHHHHHHHHHTTCCE-EEE-ECCCSSSSSCCEEEEEEESSCEEEEEEESSHHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHcCCCC-eeE-EeeCCCCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhc
Confidence 4799999999999999965 999 888999999 799999999999999999999999999999999999864
No 22
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=99.79 E-value=1.3e-20 Score=167.21 Aligned_cols=99 Identities=24% Similarity=0.319 Sum_probs=21.9
Q ss_pred CchhcHHHHHHHHHHHHhhhhccccC--CCCChHHHHHHHHHHcCCCCCcEEecccCCCCCCcEEEEEEECCEEeecccC
Q 024888 1 MLEKQIELLRSMQRSQLSMMFTNQED--DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGA 78 (261)
Q Consensus 1 ~LD~Gle~ar~fV~kll~~~l~~~~~--~~~n~KS~LQEl~Qk~~~~~P~Y~~~~sGp~H~~~Ftv~V~V~g~~~g~G~G 78 (261)
|||+|++.+++||.++|.+.+..... ...|||+.||||||++++..|.|++..+||+|.+.|+|.|+|+|..++.|.|
T Consensus 132 yld~g~~~~~~~i~~~~~~~~~~~~~~~~~~dpkt~Lqe~~q~~~~~~p~Y~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G 211 (242)
T 2a11_A 132 YLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVG 211 (242)
T ss_dssp HHHHCHHHHHHHHHHHTHHHHHHTTC------------------------------------------------------
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHhhhccccCChHHHHHHHHHHhCCCCCeEEEeccCCCCCCeEEEEEEECCEEEEEeee
Confidence 68999999999999999887776433 4679999999999999999999998559999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhCC
Q 024888 79 KSKKQAEMSAAKVAYMRLKEP 99 (261)
Q Consensus 79 ~SKKeAEq~AAk~AL~~L~~~ 99 (261)
.|||+||+.||+.||+.|...
T Consensus 212 ~skk~Ae~~AA~~AL~~L~~~ 232 (242)
T 2a11_A 212 RSKKEAEQKAAAAAWKALEVL 232 (242)
T ss_dssp ---------------------
T ss_pred CCHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999754
No 23
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.78 E-value=6.3e-19 Score=138.16 Aligned_cols=71 Identities=30% Similarity=0.395 Sum_probs=65.3
Q ss_pred CCCCChHHHHHHHHHHcCCCCCcEEe-cccCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhhCC
Q 024888 26 DDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP 99 (261)
Q Consensus 26 ~~~~n~KS~LQEl~Qk~~~~~P~Y~~-~~sGp~H~~~Ftv~V~V~g~~~g~G~G~SKKeAEq~AAk~AL~~L~~~ 99 (261)
....|||+.||||||++ ..|.|++ ..+||+|.++|++.|.|+|..+ .|.|+|||+|||+||+.||+.|...
T Consensus 13 ~~~~d~Kt~LqE~~Q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~aL~~L~~~ 84 (97)
T 2dmy_A 13 SKAIDLMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMGYP 84 (97)
T ss_dssp CCSSSCTHHHHHHHHHS--CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHhcC--CCceEEEEEeeCCCCCCeEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHhCCC
Confidence 35689999999999995 6899998 5689999999999999999998 8999999999999999999999754
No 24
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=99.77 E-value=4.2e-19 Score=142.94 Aligned_cols=70 Identities=26% Similarity=0.297 Sum_probs=65.9
Q ss_pred CChHHHHHHHHHHcCCCCCcEEecccCCCCCCcEEEEEEE-----CCEEeecccCCCHHHHHHHHHHHHHHHhhCC
Q 024888 29 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEV-----GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP 99 (261)
Q Consensus 29 ~n~KS~LQEl~Qk~~~~~P~Y~~~~sGp~H~~~Ftv~V~V-----~g~~~g~G~G~SKKeAEq~AAk~AL~~L~~~ 99 (261)
.|||+.||||||++++ .|.|++...||+|.++|+|.|.| +|..++.|.|+|||+|||.||+.||+.|...
T Consensus 26 ~d~Kt~LqE~~Qk~~~-~p~Y~~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G~G~SKK~AEq~AA~~AL~~L~~~ 100 (113)
T 1uil_A 26 ENAKARLNQYFQKEKI-QGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHL 100 (113)
T ss_dssp HHHHHHHHHHHHHSCC-CCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCC-CCeEEEeeECCCCCCcEEEEEEEeeeccCCEEEEEEeeCCHHHHHHHHHHHHHHHHHhc
Confidence 5999999999999999 99999878899999999999999 6888999999999999999999999999754
No 25
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=99.76 E-value=1e-18 Score=141.44 Aligned_cols=77 Identities=27% Similarity=0.321 Sum_probs=68.1
Q ss_pred CCCCChHHHHHHHHHHcCCCCCcEEe-cccCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhhCCCCCCC
Q 024888 26 DDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQG 104 (261)
Q Consensus 26 ~~~~n~KS~LQEl~Qk~~~~~P~Y~~-~~sGp~H~~~Ftv~V~V~g~~~g~G~G~SKKeAEq~AAk~AL~~L~~~~~~~~ 104 (261)
...+|||+.||||||+ |.|++ ..+||+|+++|++.|.|+|..| .|.|+|||+|||+||+.||+.|........
T Consensus 34 ~~~kd~Ks~LQE~~q~-----p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~~~~~~~ 107 (114)
T 2ljh_A 34 PQPKNTVAMLNELRHG-----LIYKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALRSFIQFKDGAV 107 (114)
T ss_dssp CCCSCHHHHHHHHCSC-----CEEEEEEEECCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCCCTTCCC
T ss_pred CCCCCHHHHHHHHccC-----CeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 3568999999999984 89998 6789999999999999999999 999999999999999999999997665555
Q ss_pred CCcc
Q 024888 105 PALV 108 (261)
Q Consensus 105 ~~~~ 108 (261)
++++
T Consensus 108 y~p~ 111 (114)
T 2ljh_A 108 LSPL 111 (114)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 5444
No 26
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=99.76 E-value=4e-19 Score=144.52 Aligned_cols=70 Identities=21% Similarity=0.111 Sum_probs=63.8
Q ss_pred CCCChHHHHHHHHHHcCCCCCcEEecccCCCCCCcEEEEEEECCE-EeecccCCCHHHHHHHHHHHHHHHhh
Q 024888 27 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGE-VFSGQGAKSKKQAEMSAAKVAYMRLK 97 (261)
Q Consensus 27 ~~~n~KS~LQEl~Qk~~~~~P~Y~~~~sGp~H~~~Ftv~V~V~g~-~~g~G~G~SKKeAEq~AAk~AL~~L~ 97 (261)
...|||+.||||+|+. ...|.|++..+||+|++.|+|.|.|+|. .++.|.|+|||+|||+||+.||+.+.
T Consensus 6 ~~~D~KT~LQE~~Q~~-~~~P~Y~vv~~GPdH~k~F~v~V~i~g~~~~g~G~G~SKK~AEQ~AA~~AL~~l~ 76 (117)
T 1t4o_A 6 LDMNAKRQLYSLIGYA-SLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKK 76 (117)
T ss_dssp CCTTHHHHHHHHHCCG-GGCCEEEEEECCCSSCCCEEEEEECTTCCEEEEEEESSHHHHHHHHHHHHHHCHH
T ss_pred CCCCchHHHHHHHcCC-CCCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 4579999999999995 4789999854599999999999999999 89999999999999999999998765
No 27
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.76 E-value=4.9e-18 Score=139.78 Aligned_cols=74 Identities=31% Similarity=0.306 Sum_probs=67.9
Q ss_pred CCCChHHHHHHHHHHcCCCCCcEEecccCCCCCCcEEEEEEECCEEeecccC-CCHHHHHHHHHHHHHHHhhCCCCC
Q 024888 27 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGA-KSKKQAEMSAAKVAYMRLKEPNPS 102 (261)
Q Consensus 27 ~~~n~KS~LQEl~Qk~~~~~P~Y~~~~sGp~H~~~Ftv~V~V~g~~~g~G~G-~SKKeAEq~AAk~AL~~L~~~~~~ 102 (261)
...|||+.||||||++++.+|.|++... +|.+.|+|.|.|+|..|+.|.| +|||+|||+||+.||+.|.....+
T Consensus 24 ~~~d~Kt~LQE~~Qk~~~~~P~Y~~v~~--~H~~~F~v~V~v~g~~~g~G~G~~SKK~AEQ~AA~~AL~~L~~~~~~ 98 (128)
T 1whn_A 24 PQITPKMCLLEWCRREKLPQPVYETVQR--TIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGLPEGR 98 (128)
T ss_dssp TTCCHHHHHHHHHHHTTCCCCCCCEEEC--SSSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHHHHHHTCSSST
T ss_pred cCCCHHHHHHHHHHHcCCCCCeEEEEee--cCCCcEEEEEEECCEEEEEEeccCCHHHHHHHHHHHHHHHHhccccc
Confidence 4689999999999999999999998655 9999999999999999999999 999999999999999999865443
No 28
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=99.75 E-value=1.9e-18 Score=134.56 Aligned_cols=70 Identities=33% Similarity=0.344 Sum_probs=64.2
Q ss_pred CCChHHHHHHHHHHcCCCCCcEEe-cccCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhhCCC
Q 024888 28 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 100 (261)
Q Consensus 28 ~~n~KS~LQEl~Qk~~~~~P~Y~~-~~sGp~H~~~Ftv~V~V~g~~~g~G~G~SKKeAEq~AAk~AL~~L~~~~ 100 (261)
..++|+.||||||+++ .|.|++ ..+||+|+++|+|.|.|+|..+ .|.|+|||+|||+||+.||+.|....
T Consensus 13 ~~~~K~~LqEl~Qk~~--~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~~~ 83 (91)
T 2l33_A 13 TKHGKNPVMELNEKRR--GLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFPDT 83 (91)
T ss_dssp CSSTTCHHHHHHHHCS--SCEEEEEEEEECSSCEEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCCCC
T ss_pred ccCCCCHHHHHHHhCC--CCeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHhhcC
Confidence 3689999999999988 889998 6789999999999999999987 89999999999999999999997543
No 29
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=99.73 E-value=8.5e-18 Score=149.66 Aligned_cols=136 Identities=18% Similarity=0.118 Sum_probs=96.5
Q ss_pred CCCChHHHHHHHHHHcCCCCCcEEe-cccCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhhCCCCCCCC
Q 024888 27 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGP 105 (261)
Q Consensus 27 ~~~n~KS~LQEl~Qk~~~~~P~Y~~-~~sGp~H~~~Ftv~V~V~g~~~g~G~G~SKKeAEq~AAk~AL~~L~~~~~~~~~ 105 (261)
..+|||+.||||||++++..|.|++ ..+||+ +.|+|.|.|+|..|+.|.|+|||+|||+||+.||+.|.........
T Consensus 20 ~~kd~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~--~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~aL~~L~~~~~~~~~ 97 (232)
T 2yt4_A 20 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPDFVKQTS 97 (232)
T ss_dssp TTSCHHHHHHHHHHHTTCCCCEEEEEECSCTT--SCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHSTTTTTC--
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEeeECCC--CcEEEEEEECCEEEeecCCCCHHHHHHHHHHHHHHHHHhhccccCC
Confidence 5689999999999999999999998 578998 9999999999999999999999999999999999999864221100
Q ss_pred C----------cc-----CC------------------------CcccCcccc--cc-ccCcCccccccccccccceeec
Q 024888 106 A----------LV-----SP------------------------DIQAQADYS--SS-SLQSNVTADLHHNIQTAGRLVF 143 (261)
Q Consensus 106 ~----------~~-----~~------------------------~~~~~p~ft--~~-~~~~~~t~~~~~~~~~~~~~~~ 143 (261)
. .+ .. -....|.|. +. ....++..-|..... .++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~kt~LqE~~~~~~~~p~Y~~~~~~~~Gp~h~~~F~~~v~---~~~~ 174 (232)
T 2yt4_A 98 EEKPKDSEELEYFNHISIEDSRVYELTSKAGLLSPYQILHECLKRNHGMGDTSIKFEVVPGKNQKSEYVMACG---KHTV 174 (232)
T ss_dssp ------CCGGGGGGGSBTTCTTHHHHHHHHTCCCHHHHHHHHHHTSSSCCCEEEECC------CCEEEEEEET---TEEE
T ss_pred ccccccccchhhcccccccCCcccccccccCCCChhHHHHHHHHcCCCCCceEEEEeecCCCCCCCEEEEEEE---EEEE
Confidence 0 00 00 001236776 33 233444444433322 3344
Q ss_pred CCCCCCcchHHHHhhhcccccccc
Q 024888 144 NPNSMPKVQAEEIRELTTVNTEVA 167 (261)
Q Consensus 144 ~~~~~~kk~aee~~a~~~~~~~~~ 167 (261)
.|..-+||+||+.||.+++..+.+
T Consensus 175 ~G~G~sKK~Aeq~AA~~aL~~L~~ 198 (232)
T 2yt4_A 175 RGWCKNKRVGKQLASQKILQLLHP 198 (232)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHST
T ss_pred EEEeCCHHHHHHHHHHHHHHHHHh
Confidence 555556999999999999987654
No 30
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=99.71 E-value=2.1e-17 Score=121.82 Aligned_cols=66 Identities=33% Similarity=0.383 Sum_probs=60.1
Q ss_pred CCCChHHHHHHHHHHcCCCCCcEEe-cccCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhhC
Q 024888 27 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98 (261)
Q Consensus 27 ~~~n~KS~LQEl~Qk~~~~~P~Y~~-~~sGp~H~~~Ftv~V~V~g~~~g~G~G~SKKeAEq~AAk~AL~~L~~ 98 (261)
..+|||+.|||| ...|.|++ ..+||+|.+.|++.|.|+|..+ .|.|+|||+|||+||+.||+.|..
T Consensus 2 ~~knp~s~L~E~-----~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G~G~SKK~Aeq~AA~~al~~L~~ 68 (71)
T 2b7v_A 2 SGKNPVMILNEL-----RPGLKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFN 68 (71)
T ss_dssp CSSCHHHHHHHH-----CCSCEEEEEECCCCTTTCCEEEEEECSSCEE-EEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHh-----CCCCEEEEEEeECCCCCceEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHHHh
Confidence 368999999999 36899997 6789999999999999999876 799999999999999999998864
No 31
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=99.65 E-value=2.6e-16 Score=117.74 Aligned_cols=65 Identities=35% Similarity=0.399 Sum_probs=55.4
Q ss_pred HHHHHHHHHHcCCCCCcEEe-cccCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhhCC
Q 024888 32 KNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP 99 (261)
Q Consensus 32 KS~LQEl~Qk~~~~~P~Y~~-~~sGp~H~~~Ftv~V~V~g~~~g~G~G~SKKeAEq~AAk~AL~~L~~~ 99 (261)
|+.|++|+|.. ..|.|++ ..+||+|+++|++.|.|+|..+ .|.|+|||+|||+||+.||+.|...
T Consensus 7 K~pl~~L~q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~~ 72 (75)
T 3p1x_A 7 KNPVMELNEKR--RGLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFPD 72 (75)
T ss_dssp CCHHHHHHHHS--TTCCEEEEEEESCTTSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHcC--CCCEEEEEEeeCCCCCceEEEEEEECCEEE-EEEECCHHHHHHHHHHHHHHHHHcc
Confidence 34445555543 5789998 5789999999999999999998 8999999999999999999999754
No 32
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=99.61 E-value=2.2e-15 Score=134.17 Aligned_cols=68 Identities=38% Similarity=0.487 Sum_probs=62.0
Q ss_pred CCChHHHHHHHHHHcCCCCCcEEe-cccCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhhC
Q 024888 28 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98 (261)
Q Consensus 28 ~~n~KS~LQEl~Qk~~~~~P~Y~~-~~sGp~H~~~Ftv~V~V~g~~~g~G~G~SKKeAEq~AAk~AL~~L~~ 98 (261)
..|||+.|++|++. +..|.|++ ..+||+|.++|++.|.|+|..+ .|.|+|||+|||+||+.||+.|..
T Consensus 3 ~~~~K~~l~~l~e~--~~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~l~~ 71 (236)
T 2l3j_A 3 PVLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQ 71 (236)
T ss_dssp CCCTHHHHHHHHHH--CSSCEEEEEEEESCTTSCEEEEEEEETTEEE-EEEESHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCcCHHHHHhhc--CCCceEEEEeccCCCCCCeEEEEEEECCEEE-EEecCChHHHHHHHHHHHHHHHHh
Confidence 36899999999976 46799998 5789999999999999999886 899999999999999999999975
No 33
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=99.61 E-value=6.9e-17 Score=151.41 Aligned_cols=97 Identities=15% Similarity=0.111 Sum_probs=21.1
Q ss_pred Cchh---cHHHHHHHHHHHHhhhhcccc------CCCCChHHHHHHHHHHcCCCC-CcEEe-cccCCCCCCcEEEEEEEC
Q 024888 1 MLEK---QIELLRSMQRSQLSMMFTNQE------DDSVLYKNVLQELAQKEAYAL-PVYNT-KQSGESHAPTFVSTVEVG 69 (261)
Q Consensus 1 ~LD~---Gle~ar~fV~kll~~~l~~~~------~~~~n~KS~LQEl~Qk~~~~~-P~Y~~-~~sGp~H~~~Ftv~V~V~ 69 (261)
|||+ |++.|++||.++|.+.+..+. ....|||+.||||||+++++. |.|++ ...|| |+|.|+|+
T Consensus 217 ylD~~~~G~~~a~~fi~~l~~~~l~~~~~~~~~~~~~~d~Kt~LqE~~Q~~~~~~~~~Y~~~~~~Gp-----F~v~v~i~ 291 (341)
T 3rv0_A 217 VIDRFGTEFLDIKEWLEELSEKKLAKSSQMVIKEPLNKNAKNELAELLQINKLGHKLHYRKLTEMPP-----FRVEVKIG 291 (341)
T ss_dssp HHHHCSSTTHHHHHHHHHHTHHHHHCGGGC--------------------------------------------------
T ss_pred hhcCccCCHHHHHHHHHHHHHHHHHHHhhhhhccccccCHHHHHHHHHHHcCCCCCceEEEEeccCC-----EEEEEEEC
Confidence 5788 999999999999998876532 235899999999999998765 59998 56676 99999999
Q ss_pred CEEeecccCCCHHHHHHHHHHHHHHHhhCCCCC
Q 024888 70 GEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPS 102 (261)
Q Consensus 70 g~~~g~G~G~SKKeAEq~AAk~AL~~L~~~~~~ 102 (261)
|..++.|.|.|||+|||.||+.||+.|....+-
T Consensus 292 ~~~~g~G~G~SKK~AEq~AA~~AL~~L~~~~k~ 324 (341)
T 3rv0_A 292 DILLDEAEGNSIREAEHRAAMKVLENDELLRKY 324 (341)
T ss_dssp ---------------------------------
T ss_pred CEEEEEEEeCCHHHHHHHHHHHHHHHhhhhhhh
Confidence 999999999999999999999999999865433
No 34
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=99.55 E-value=3.8e-15 Score=127.12 Aligned_cols=93 Identities=18% Similarity=0.184 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHhhhhc--c----c-----cCCCCChHHHHHHHHHHcCCCCCcEEecccCCCCCCcEEEEEEECCEEeec
Q 024888 7 ELLRSMQRSQLSMMFT--N----Q-----EDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSG 75 (261)
Q Consensus 7 e~ar~fV~kll~~~l~--~----~-----~~~~~n~KS~LQEl~Qk~~~~~P~Y~~~~sGp~H~~~Ftv~V~V~g~~~g~ 75 (261)
.+|+..+..+...... . . .....|||++||||||++++.+ .|++..+||+|.+.|++.|.|+|..|+.
T Consensus 71 ~AA~~al~~L~~~~~~~~p~~~~~~~~~e~~~~~n~~~~L~E~~qk~~~~~-~Y~~~~~G~~h~~~F~~~v~v~~~~~~~ 149 (179)
T 1qu6_A 71 AAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTV-NYEQCASGVHGPEGFHYKCKMGQKEYSI 149 (179)
T ss_dssp HHHHHHHHHHHSCCSCCSCSSCCCSCSSCCCCCCCCHHHHHHHHHHSCCEE-EEEEEEECSSSSSEEEEEEEEETTBCCE
T ss_pred HHHHHHHHHHhcccccCCCccCCCCCcccccCCCCHHHHHHHHHHhcCCcc-eEEecCcCCCCCCeEEEEEEECCEEEee
Confidence 5677777766533211 0 0 1135799999999999999976 9998888999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHHHhhCCC
Q 024888 76 QGAKSKKQAEMSAAKVAYMRLKEPN 100 (261)
Q Consensus 76 G~G~SKKeAEq~AAk~AL~~L~~~~ 100 (261)
|.|.|||+||+.||+.||..|....
T Consensus 150 g~g~sKK~Ak~~AA~~al~~L~~~~ 174 (179)
T 1qu6_A 150 GTGSTKQEAKQLAAKLAYLQILSEE 174 (179)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHCC
T ss_pred EEECCHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999997543
No 35
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=99.50 E-value=4.8e-14 Score=125.51 Aligned_cols=65 Identities=34% Similarity=0.386 Sum_probs=60.2
Q ss_pred CCChHHHHHHHHHHcCCCCCcEEe-cccCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhhC
Q 024888 28 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98 (261)
Q Consensus 28 ~~n~KS~LQEl~Qk~~~~~P~Y~~-~~sGp~H~~~Ftv~V~V~g~~~g~G~G~SKKeAEq~AAk~AL~~L~~ 98 (261)
..|||++|||| +..|.|++ ..+||+|.++|++.|.|+|..+ .|.|+|||+|||.||+.||+.|..
T Consensus 160 ~~d~ks~LqE~-----~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G~G~sKK~Aeq~AA~~al~~L~~ 225 (236)
T 2l3j_A 160 GKNPVMILNEL-----RPGLKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFN 225 (236)
T ss_dssp SCCHHHHHHHH-----CCCEEEEEECCSSSSSSCCEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHhc-----CCCCcEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHcc
Confidence 47999999999 56899997 6789999999999999999987 899999999999999999999974
No 36
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=99.45 E-value=4.1e-14 Score=126.54 Aligned_cols=93 Identities=17% Similarity=0.159 Sum_probs=72.7
Q ss_pred CchhcH--HHHHHHHHHHHhhhhccccCCCCChHHHHHHHHHHcCCCCCcEEecccCCCCCCcEEEEEEECCEEeecccC
Q 024888 1 MLEKQI--ELLRSMQRSQLSMMFTNQEDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGA 78 (261)
Q Consensus 1 ~LD~Gl--e~ar~fV~kll~~~l~~~~~~~~n~KS~LQEl~Qk~~~~~P~Y~~~~sGp~H~~~Ftv~V~V~g~~~g~G~G 78 (261)
|||+|+ +.+++||.++|.+.++.... .+||+.||||.|.... .+.|. ..|+.|.+.|+|.|.|+|..++.|.|
T Consensus 169 ylD~G~~~~~~~~~i~~~~~~~i~~~~~--~~~k~~l~el~~~~~~-~~~~~--~~~~~~~~~f~v~v~v~~~~~~~G~G 243 (265)
T 3c4b_A 169 YMDSGMSLEVVWQVYYPMMQPLIEKFSA--NVPRSPVRELLEMEPE-TAKFS--PAERTYDGKVRVTVEVVGKGKFKGVG 243 (265)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHHHHH--HSCCCHHHHHHHHCTT-TEEEC--CCEECTTSCEEEEEEETTTEEEEEEE
T ss_pred eeecCCCHHHHHHHHHHHHHHHHHhHhh--cCCCCHHHHHHHhccC-Cceee--eccccCCCcEEEEEEEecceEEEEee
Confidence 689999 88999999999887765322 3455556666555432 23333 34567999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhC
Q 024888 79 KSKKQAEMSAAKVAYMRLKE 98 (261)
Q Consensus 79 ~SKKeAEq~AAk~AL~~L~~ 98 (261)
+|||+|||.||+.||+.|..
T Consensus 244 ~SkK~Aeq~AA~~AL~~l~~ 263 (265)
T 3c4b_A 244 RSYRIAKSAAARRALRSLKA 263 (265)
T ss_dssp SSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999863
No 37
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=99.41 E-value=1.6e-13 Score=122.01 Aligned_cols=68 Identities=13% Similarity=0.073 Sum_probs=55.7
Q ss_pred CCChHHHHHHHHHHcCCCCCcEE--e-cccCCCCCCcEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHHhhCC
Q 024888 28 SVLYKNVLQELAQKEAYALPVYN--T-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP 99 (261)
Q Consensus 28 ~~n~KS~LQEl~Qk~~~~~P~Y~--~-~~sGp~H~~~Ftv~V~V~g~~~g~G~G~SKKeAEq~AAk~AL~~L~~~ 99 (261)
..|||+.||| ||++++++|.|+ + ...||+|.+.|++.|. ..++.|.|+|||+|||.||+.||+.|...
T Consensus 129 ~~d~kt~LqE-~~~~~~~~p~Y~~~~~~~~Gp~h~~~F~~~v~---~~~~~G~G~sKK~Aeq~AA~~aL~~L~~~ 199 (232)
T 2yt4_A 129 LLSPYQILHE-CLKRNHGMGDTSIKFEVVPGKNQKSEYVMACG---KHTVRGWCKNKRVGKQLASQKILQLLHPH 199 (232)
T ss_dssp CCCHHHHHHH-HHHTSSSCCCEEEECC------CCEEEEEEET---TEEEEEEESSHHHHHHHHHHHHHHHHSTT
T ss_pred CCChhHHHHH-HHHcCCCCCceEEEEeecCCCCCCCEEEEEEE---EEEEEEEeCCHHHHHHHHHHHHHHHHHhh
Confidence 4699999999 999999999999 5 5789999999999886 34678899999999999999999999754
No 38
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=96.30 E-value=0.00073 Score=69.18 Aligned_cols=70 Identities=10% Similarity=-0.066 Sum_probs=53.1
Q ss_pred Cch-hcHHHHHHHHHHHHhhhhcccc--CCCCCh-HHHHHHHHHHcCCCCCcEEecccCCCCCCcEEEEEEECCEEeecc
Q 024888 1 MLE-KQIELLRSMQRSQLSMMFTNQE--DDSVLY-KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQ 76 (261)
Q Consensus 1 ~LD-~Gle~ar~fV~kll~~~l~~~~--~~~~n~-KS~LQEl~Qk~~~~~P~Y~~~~sGp~H~~~Ftv~V~V~g~~~g~G 76 (261)
||| .|++.|++|+.++|.+.+.... ...+|| |+.||||+|+++. +.|
T Consensus 416 ylD~~G~~~a~~~v~~~~~~~~~~~~~~~~~~Dp~Kt~LqE~~q~~~i-----------------------------a~~ 466 (756)
T 2qvw_A 416 FTGPNGIYGCEEFLAKTLMSPEHSKTVGSACPDAVTKASKRVCMGEAG-----------------------------AHE 466 (756)
T ss_dssp HHSTTHHHHHHHHHHHHHBCGGGSCC---CCCHHHHHHHHHHHTSCCC-----------------------------HHH
T ss_pred cccccChHHHHHHHHHHHHhhhhcccccccccCchHHHHHHHHhccch-----------------------------hhh
Confidence 589 9999999999999998877643 345789 9999999985442 234
Q ss_pred cCCCHHHHH---------HHHHHHHHHHhhCC
Q 024888 77 GAKSKKQAE---------MSAAKVAYMRLKEP 99 (261)
Q Consensus 77 ~G~SKKeAE---------q~AAk~AL~~L~~~ 99 (261)
.+.+.+.|+ ..||+.||+.|...
T Consensus 467 v~~~~~~ak~~~~~~~~~~~aa~~aL~~l~~~ 498 (756)
T 2qvw_A 467 FRSLVDYACEQGISVFCSSRVSTMFLERLRDI 498 (756)
T ss_dssp HHHHHHHTTTTTCCCBSSSHHHHHHHHHHHHS
T ss_pred hhhhhhHHhhhccccchhhHHHHHHHHhhccc
Confidence 555666666 57999999887653
No 39
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=94.29 E-value=0.078 Score=41.35 Aligned_cols=70 Identities=11% Similarity=0.069 Sum_probs=48.0
Q ss_pred CChHHHHHHHHHHcC-----CCCCcEEecccCCCCCCcEEEEEEECCE----EeecccCCCHHHHHHHHHHHHHHHhhCC
Q 024888 29 VLYKNVLQELAQKEA-----YALPVYNTKQSGESHAPTFVSTVEVGGE----VFSGQGAKSKKQAEMSAAKVAYMRLKEP 99 (261)
Q Consensus 29 ~n~KS~LQEl~Qk~~-----~~~P~Y~~~~sGp~H~~~Ftv~V~V~g~----~~g~G~G~SKKeAEq~AAk~AL~~L~~~ 99 (261)
.+.+++|+.||++.- ...|.|.+.... .....| |+|.+-.. .+.+..-.|||.|++.||-+|+..|.+.
T Consensus 4 ~sAi~lL~~yC~~Lp~d~~~~~~P~~~~~~~~-~~~~~~-c~v~LP~~splr~i~g~~~~sk~~AK~sAAf~Ac~~L~~~ 81 (102)
T 2kou_A 4 GSSISMMYKYCSRLPHDEFFQPKPEFQFKPVD-EFGGTI-CRITLPANAPISEIESSLLPSTEAAKKDACLKAVHELHNL 81 (102)
T ss_dssp SHHHHHHHHHHTTSSSCTTCCSSCEEEEEECC-GGGCEE-EEEECCTTCSSCCEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccccCccceEEEeEee-cCCCeE-EEEECCCCCCCCeeeCCccccHHHHHHHHHHHHHHHHHHC
Confidence 467899999999963 256899863211 112466 88876541 1222234999999999999999999764
Q ss_pred C
Q 024888 100 N 100 (261)
Q Consensus 100 ~ 100 (261)
+
T Consensus 82 G 82 (102)
T 2kou_A 82 G 82 (102)
T ss_dssp C
T ss_pred C
Confidence 3
No 40
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=93.73 E-value=0.11 Score=54.53 Aligned_cols=70 Identities=20% Similarity=0.224 Sum_probs=51.1
Q ss_pred CChHHHHHHHHHHcCCCCCcEEecc--c----C------CCCCC-cEEEEEEECCEEeecccCCCHHHHHHHHHHHHHHH
Q 024888 29 VLYKNVLQELAQKEAYALPVYNTKQ--S----G------ESHAP-TFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMR 95 (261)
Q Consensus 29 ~n~KS~LQEl~Qk~~~~~P~Y~~~~--s----G------p~H~~-~Ftv~V~V~g~~~g~G~G~SKKeAEq~AAk~AL~~ 95 (261)
..||..+++ +.|- .+.|++++ + | |...| .|.|.+.+-+.....+..+-||+|||.||+.||++
T Consensus 17 ~~pk~~~~q---~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~lp~~~~~~~~~~~kkd~eq~aa~~al~~ 92 (950)
T 3htx_A 17 PTPKAIIHQ---KFGA-KASYTVEEVHDSSQSGCPGLAIPQKGPCLYRCHLQLPEFSVVSNVFKKKKDSEQSAAELALDK 92 (950)
T ss_dssp CCCHHHHHH---TTGG-GSEEEEEEECCSCSCCCTTCCSCCCCCCEEEEEEECSSCEEECCCBSCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHH---HhCc-ceeeeehhhhcccCCCCCccccCCCCCeeEEEEeeCCCceEecchhhccccHHHHHHHHHHHH
Confidence 478887754 3332 36898731 1 1 22333 79999999887777789999999999999999999
Q ss_pred hhCCCCC
Q 024888 96 LKEPNPS 102 (261)
Q Consensus 96 L~~~~~~ 102 (261)
|+.....
T Consensus 93 ~g~~~~~ 99 (950)
T 3htx_A 93 LGIRPQN 99 (950)
T ss_dssp TTSTTTS
T ss_pred hCCCccc
Confidence 9985433
No 41
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=86.63 E-value=0.31 Score=35.01 Aligned_cols=49 Identities=8% Similarity=0.012 Sum_probs=32.6
Q ss_pred ccccccccCcCccccccccccccceeecCCCC-CCcchHHHHhhhccccc
Q 024888 116 ADYSSSSLQSNVTADLHHNIQTAGRLVFNPNS-MPKVQAEEIRELTTVNT 164 (261)
Q Consensus 116 p~ft~~~~~~~~t~~~~~~~~~~~~~~~~~~~-~~kk~aee~~a~~~~~~ 164 (261)
|.|.+.....++...|...+...+.++..|.. -+||+||+.||+.++..
T Consensus 21 p~Y~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~~sKK~Aeq~AA~~al~~ 70 (73)
T 3adg_A 21 PVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRE 70 (73)
T ss_dssp CEEEEEEESSTTSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHH
T ss_pred CEEEEEeECCCCCCeEEEEEEECCEEEEeeeccCCHHHHHHHHHHHHHHH
Confidence 56666544445555565555555555555666 57999999999998763
No 42
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=84.58 E-value=0.39 Score=36.89 Aligned_cols=51 Identities=10% Similarity=0.031 Sum_probs=29.8
Q ss_pred ccccccccCcCccccccccccccceeecCCCCCCcchHHHHhhhcccccccc
Q 024888 116 ADYSSSSLQSNVTADLHHNIQTAGRLVFNPNSMPKVQAEEIRELTTVNTEVA 167 (261)
Q Consensus 116 p~ft~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~kk~aee~~a~~~~~~~~~ 167 (261)
|.|.+.....+. ..|...+.....++..|..-+||+||+.||+.++..+.+
T Consensus 34 P~Y~~~~~~Gp~-~~F~~~V~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~ 84 (98)
T 1x47_A 34 PVYNFFECENPS-EPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIP 84 (98)
T ss_dssp CEEEEEECSSSS-CCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHCS
T ss_pred CeEEEEEeECCC-CcEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHh
Confidence 566655433222 444333333333333333345999999999999987654
No 43
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=84.21 E-value=0.45 Score=37.54 Aligned_cols=55 Identities=11% Similarity=0.065 Sum_probs=32.2
Q ss_pred ccccccccCcCccccccccccc-----cceeecCCCCCCcchHHHHhhhccccccccCCC
Q 024888 116 ADYSSSSLQSNVTADLHHNIQT-----AGRLVFNPNSMPKVQAEEIRELTTVNTEVAGYD 170 (261)
Q Consensus 116 p~ft~~~~~~~~t~~~~~~~~~-----~~~~~~~~~~~~kk~aee~~a~~~~~~~~~~~~ 170 (261)
|.|.+.....++...|...+.. ...++..+..-+||+||+.||+.++..+.....
T Consensus 43 p~Y~~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G~G~SKK~AEq~AA~~AL~~L~~~~~ 102 (113)
T 1uil_A 43 GEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHLGV 102 (113)
T ss_dssp CCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHHHTS
T ss_pred CeEEEeeECCCCCCcEEEEEEEeeeccCCEEEEEEeeCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4565333333444444443333 233333455556999999999999987654333
No 44
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=83.88 E-value=0.27 Score=35.82 Aligned_cols=54 Identities=11% Similarity=0.089 Sum_probs=32.2
Q ss_pred Cccccccc-cCcCccccccccccccceeecCCCCCCcchHHHHhhhccccccccCC
Q 024888 115 QADYSSSS-LQSNVTADLHHNIQTAGRLVFNPNSMPKVQAEEIRELTTVNTEVAGY 169 (261)
Q Consensus 115 ~p~ft~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~kk~aee~~a~~~~~~~~~~~ 169 (261)
.|.|.+.. ...++...|...+...+.++ .|...+||+||+.||+.++..+..++
T Consensus 19 ~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~~~ 73 (75)
T 3p1x_A 19 GLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFPDT 73 (75)
T ss_dssp TCCEEEEEEESCTTSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCTTC
T ss_pred CCEEEEEEeeCCCCCceEEEEEEECCEEE-EEEECCHHHHHHHHHHHHHHHHHccC
Confidence 45676553 33344444444444433333 34444599999999999998766543
No 45
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=81.91 E-value=0.23 Score=35.76 Aligned_cols=49 Identities=10% Similarity=0.062 Sum_probs=28.7
Q ss_pred Cccccccc-cCcCccccccccccccceeecCCCCCCcchHHHHhhhccccc
Q 024888 115 QADYSSSS-LQSNVTADLHHNIQTAGRLVFNPNSMPKVQAEEIRELTTVNT 164 (261)
Q Consensus 115 ~p~ft~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~kk~aee~~a~~~~~~ 164 (261)
.|.|.+.. ...++...|...+...+.+. .|..-+||+||+.||+.++..
T Consensus 19 ~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~ 68 (73)
T 2b7t_A 19 GLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRS 68 (73)
T ss_dssp CCEEEEEEEECSSSSCEEEEEEESSSSEE-EEEESSHHHHHHHHHHHHHHH
T ss_pred CceEEEEEeeCCCCCCeEEEEEEECCEEE-EeecCCHHHHHHHHHHHHHHH
Confidence 35666543 23344444544444433332 344445999999999999874
No 46
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.98 E-value=1.9 Score=34.66 Aligned_cols=68 Identities=22% Similarity=0.112 Sum_probs=43.7
Q ss_pred CCCChHHHHHHHHHHcCC-----CCCcEEecccCCCCCCcEEEEEEEC--CEEeecccCCCHHHHHHHHHHHHHHHhhC
Q 024888 27 DSVLYKNVLQELAQKEAY-----ALPVYNTKQSGESHAPTFVSTVEVG--GEVFSGQGAKSKKQAEMSAAKVAYMRLKE 98 (261)
Q Consensus 27 ~~~n~KS~LQEl~Qk~~~-----~~P~Y~~~~sGp~H~~~Ftv~V~V~--g~~~g~G~G~SKKeAEq~AAk~AL~~L~~ 98 (261)
....||++|..-.|+--. ..-.|-. .+|. ++=.|++++. ...--.|.|+.|-+||..||-.|+++|+.
T Consensus 15 ~Fp~PKnLL~~ViqrA~~ss~~kd~l~~~~-t~g~---k~K~~tl~l~WP~~mef~a~G~rK~eAE~kAAA~AC~kLK~ 89 (119)
T 2db2_A 15 EFPQPKNLLNSVIGRALGISHAKDKLVYVH-TNGP---KKKKVTLHIKWPKSVEVEGYGSKKIDAERQAAAAACQLFKG 89 (119)
T ss_dssp TCSCHHHHHHHHHHHHTTHHHHHHHEEEEE-CCSS---SSEEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHHccCchhhheeEEe-ecCC---ceeEEEEEecCCCcEEEEeeccchHHHHHHHHHHHHHHHHH
Confidence 456899999988877321 1112222 2232 3334555444 32223578999999999999999998875
No 47
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=80.05 E-value=0.77 Score=33.26 Aligned_cols=50 Identities=12% Similarity=0.032 Sum_probs=30.6
Q ss_pred ccccccc-cCcCccccccccccccceeecCCCCCCcchHHHHhhhcccccc
Q 024888 116 ADYSSSS-LQSNVTADLHHNIQTAGRLVFNPNSMPKVQAEEIRELTTVNTE 165 (261)
Q Consensus 116 p~ft~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~kk~aee~~a~~~~~~~ 165 (261)
|.|.... ...++...|...+...+.++..|..-+||+||+.||+.++..+
T Consensus 22 p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L 72 (76)
T 3adj_A 22 PLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAI 72 (76)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEETTEEEECCCBSSHHHHHHHHHHHHHHHH
T ss_pred CeEEEeeccCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHHH
Confidence 5666543 2334445454444444444445555569999999999988744
No 48
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=79.80 E-value=0.84 Score=35.29 Aligned_cols=53 Identities=8% Similarity=-0.008 Sum_probs=35.4
Q ss_pred CccccccccCcCccccccccccccceeecCCCC-CCcchHHHHhhhcccccccc
Q 024888 115 QADYSSSSLQSNVTADLHHNIQTAGRLVFNPNS-MPKVQAEEIRELTTVNTEVA 167 (261)
Q Consensus 115 ~p~ft~~~~~~~~t~~~~~~~~~~~~~~~~~~~-~~kk~aee~~a~~~~~~~~~ 167 (261)
.|.|.+.....++...|...+...+.++..|.. -+||+||+.||+.++..+..
T Consensus 34 ~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~G~G~~SKK~Aeq~AA~~AL~~L~~ 87 (103)
T 2l2n_A 34 TPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELAK 87 (103)
T ss_dssp CCEEEEEEESCSSSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeEcCCCCCeEEEEEEECCEEEEEeecCCCHHHHHHHHHHHHHHHHhc
Confidence 367766654445555555555555555555666 57999999999999986643
No 49
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=79.71 E-value=0.69 Score=34.56 Aligned_cols=52 Identities=10% Similarity=-0.023 Sum_probs=28.2
Q ss_pred Cccccccc-cCcCccccccccccccceeecCCCCCCcchHHHHhhhccccccc
Q 024888 115 QADYSSSS-LQSNVTADLHHNIQTAGRLVFNPNSMPKVQAEEIRELTTVNTEV 166 (261)
Q Consensus 115 ~p~ft~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~kk~aee~~a~~~~~~~~ 166 (261)
.|.|.+.. ...+....|...+-..+.++-.|..-+||+||+.||+.++..+.
T Consensus 23 ~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~G~G~SKK~AEq~AA~~AL~~L~ 75 (85)
T 2khx_A 23 IPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYN 75 (85)
T ss_dssp CCCEEECCCCCSSSCCCEEEEEEETTEECCCEEESSHHHHHHHHHHHHHTTCC
T ss_pred CceEEEEEeECCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHh
Confidence 35666543 22333333433333322222233333499999999999998653
No 50
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=77.60 E-value=0.58 Score=36.07 Aligned_cols=46 Identities=15% Similarity=0.081 Sum_probs=28.2
Q ss_pred CccccccccCcCccccccccccccceeecCC-CCC------CcchHHHHhhhccccccc
Q 024888 115 QADYSSSSLQSNVTADLHHNIQTAGRLVFNP-NSM------PKVQAEEIRELTTVNTEV 166 (261)
Q Consensus 115 ~p~ft~~~~~~~~t~~~~~~~~~~~~~~~~~-~~~------~kk~aee~~a~~~~~~~~ 166 (261)
.|.|.+.....++...|. +.|.+++ ..+ +||+||+.||+.++..+.
T Consensus 22 ~P~Y~~~~~Gp~H~~~F~------~~V~v~g~~~~~~G~G~SKK~Aeq~AA~~AL~~L~ 74 (99)
T 1whq_A 22 TPAYEIRAVGNKNRQKFM------CEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLV 74 (99)
T ss_dssp CCEEEEEEEECSSSEEEE------EEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEeeecCCCCCeEE------EEEEECCeEEEEEeccCCHHHHHHHHHHHHHHHHH
Confidence 367776332333444443 4444555 333 399999999999998653
No 51
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=74.83 E-value=1 Score=33.32 Aligned_cols=50 Identities=8% Similarity=0.032 Sum_probs=29.2
Q ss_pred ccccccc-cCcCccccccccccccceeecCCCCCCcchHHHHhhhccccccc
Q 024888 116 ADYSSSS-LQSNVTADLHHNIQTAGRLVFNPNSMPKVQAEEIRELTTVNTEV 166 (261)
Q Consensus 116 p~ft~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~kk~aee~~a~~~~~~~~ 166 (261)
|.|.... ...++...|...+.... ++..|..-+||+||+.||+.++..+.
T Consensus 25 p~Y~~~~~~Gp~h~~~F~~~v~v~~-~~~~G~G~SKK~Aeq~AA~~aL~~L~ 75 (84)
T 2dix_A 25 PVYECERSDVQIHVPTFTFRVTVGD-ITCTGEGTSKKLAKHRAAEAAINILK 75 (84)
T ss_dssp CEEEEEEEECSSSSCEEEEEEEETT-EEEEECSSCTTHHHHHHHHHHHHHHH
T ss_pred CeEEEEEeECCCCCCeEEEEEEECC-EEEEeeeCCHHHHHHHHHHHHHHHHh
Confidence 5666532 23334444443333333 33344444599999999999998653
No 52
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=74.04 E-value=1.4 Score=35.63 Aligned_cols=48 Identities=10% Similarity=0.074 Sum_probs=29.8
Q ss_pred ccccccccCcCccccccccccccceeecCCCC-CCcchHHHHhhhcccccc
Q 024888 116 ADYSSSSLQSNVTADLHHNIQTAGRLVFNPNS-MPKVQAEEIRELTTVNTE 165 (261)
Q Consensus 116 p~ft~~~~~~~~t~~~~~~~~~~~~~~~~~~~-~~kk~aee~~a~~~~~~~ 165 (261)
|.|.+... ++...|...+.....++-.|.. -+||+||+.||+.++..+
T Consensus 44 P~Y~~v~~--~H~~~F~v~V~v~g~~~g~G~G~~SKK~AEQ~AA~~AL~~L 92 (128)
T 1whn_A 44 PVYETVQR--TIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQ 92 (128)
T ss_dssp CCCCEEEC--SSSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHHHHHH
T ss_pred CeEEEEee--cCCCcEEEEEEECCEEEEEEeccCCHHHHHHHHHHHHHHHH
Confidence 55655443 3444444444444444444555 569999999999999865
No 53
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=73.66 E-value=0.93 Score=36.03 Aligned_cols=49 Identities=12% Similarity=-0.015 Sum_probs=30.7
Q ss_pred ccccccc-cCcCccccccccccccceeecCCCCCCcchHHHHhhhcccccc
Q 024888 116 ADYSSSS-LQSNVTADLHHNIQTAGRLVFNPNSMPKVQAEEIRELTTVNTE 165 (261)
Q Consensus 116 p~ft~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~kk~aee~~a~~~~~~~ 165 (261)
|.|.... ...+....|...+...+.++ .|..-+||+||+.||+.++..+
T Consensus 50 p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L 99 (114)
T 2ljh_A 50 LIYKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALRSF 99 (114)
T ss_dssp CEEEEEEEECCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHH
Confidence 6776543 33344455544444444444 4545569999999999999854
No 54
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=73.40 E-value=0.71 Score=32.65 Aligned_cols=49 Identities=8% Similarity=0.059 Sum_probs=27.4
Q ss_pred Cccccccc-cCcCccccccccccccceeecCCCCCCcchHHHHhhhccccc
Q 024888 115 QADYSSSS-LQSNVTADLHHNIQTAGRLVFNPNSMPKVQAEEIRELTTVNT 164 (261)
Q Consensus 115 ~p~ft~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~kk~aee~~a~~~~~~ 164 (261)
.|.|.+.. ...++...|...+...+. +..|..-+||+||+.||+.++..
T Consensus 17 ~p~Y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G~sKK~Aeq~AA~~al~~ 66 (69)
T 1di2_A 17 LPEYTVAQESGPPHKREFTITCRVETF-VETGSGTSKQVAKRVAAEKLLTK 66 (69)
T ss_dssp CCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEeECCCCCCeEEEEEEECCE-EEEeecCCHHHHHHHHHHHHHHH
Confidence 36776543 333444444333333332 22333345999999999988763
No 55
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=73.17 E-value=0.92 Score=32.73 Aligned_cols=48 Identities=4% Similarity=-0.049 Sum_probs=28.1
Q ss_pred ccccccc-cCcCccccccccccccceeecCCCCCCcchHHHHhhhccccc
Q 024888 116 ADYSSSS-LQSNVTADLHHNIQTAGRLVFNPNSMPKVQAEEIRELTTVNT 164 (261)
Q Consensus 116 p~ft~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~kk~aee~~a~~~~~~ 164 (261)
|.|.+.. ...++.+.|.+.+...+ ++..|..-+||+||+.||+.++..
T Consensus 24 p~Y~~~~~~Gp~h~~~F~~~v~i~~-~~~~G~G~sKK~Aeq~AA~~aL~~ 72 (76)
T 1ekz_A 24 VHFKVLREEGPAHMKNFITACIVGS-IVTEGEGNGKKVSKKRAAEKMLVE 72 (76)
T ss_dssp CEEEESSSCCSSSCSCSSEEEEETT-EEEEECCCSTTSSSHHHHHHHHHH
T ss_pred CEEEEEEeECCCCCCcEEEEEEECC-EEEEEeeCCHHHHHHHHHHHHHHH
Confidence 5665432 23334444444444433 334455556999999999998864
No 56
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=71.92 E-value=0.83 Score=32.55 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=27.9
Q ss_pred Cccccccc-cCcCccccccccccccceeecCCCCCCcchHHHHhhhcccccc
Q 024888 115 QADYSSSS-LQSNVTADLHHNIQTAGRLVFNPNSMPKVQAEEIRELTTVNTE 165 (261)
Q Consensus 115 ~p~ft~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~kk~aee~~a~~~~~~~ 165 (261)
.|.|.... ...++...|...+...+.+ +.|..-+||+||+.||+.++..+
T Consensus 16 ~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~-~~G~G~SKK~Aeq~AA~~al~~L 66 (71)
T 2b7v_A 16 GLKYDFLSESGESHAKSFVMSVVVDGQF-FEGSGRNKKLAKARAAQSALATV 66 (71)
T ss_dssp SCEEEEEECCCCTTTCCEEEEEECSSCE-EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEeECCCCCceEEEEEEECCEE-EEEeeCCHHHHHHHHHHHHHHHH
Confidence 35665432 2233344443333333332 23444459999999999988754
No 57
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=70.23 E-value=2.3 Score=32.48 Aligned_cols=28 Identities=11% Similarity=0.095 Sum_probs=20.5
Q ss_pred ceeecCCCCC------CcchHHHHhhhccccccc
Q 024888 139 GRLVFNPNSM------PKVQAEEIRELTTVNTEV 166 (261)
Q Consensus 139 ~~~~~~~~~~------~kk~aee~~a~~~~~~~~ 166 (261)
+.|.+++..+ +||+||+.||+.++..+.
T Consensus 49 v~v~i~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~ 82 (97)
T 1x49_A 49 FQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILD 82 (97)
T ss_dssp EEEEESSCCCCCEEESSHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHH
Confidence 4445555444 399999999999998654
No 58
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=69.24 E-value=1.3 Score=34.25 Aligned_cols=18 Identities=6% Similarity=-0.212 Sum_probs=14.9
Q ss_pred CCCcchHHHHhhhccccc
Q 024888 147 SMPKVQAEEIRELTTVNT 164 (261)
Q Consensus 147 ~~~kk~aee~~a~~~~~~ 164 (261)
.-+||+||+.||+.++..
T Consensus 55 G~SKK~AEQ~AA~~AL~~ 72 (94)
T 1t4n_A 55 GRNIKIAGIRAAENALRD 72 (94)
T ss_dssp ESSHHHHHHHHHHHHHHC
T ss_pred eCCHHHHHHHHHHHHHHH
Confidence 335999999999998874
No 59
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=69.15 E-value=0.99 Score=34.39 Aligned_cols=52 Identities=12% Similarity=0.104 Sum_probs=32.4
Q ss_pred Cccccccc-cCcCccccccccccccceeecCCCCCCcchHHHHhhhcccccccc
Q 024888 115 QADYSSSS-LQSNVTADLHHNIQTAGRLVFNPNSMPKVQAEEIRELTTVNTEVA 167 (261)
Q Consensus 115 ~p~ft~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~kk~aee~~a~~~~~~~~~ 167 (261)
.|.|.+.. ...+....|...+...+.+. .|..-+||+||+.||+.++..+.+
T Consensus 29 ~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~ 81 (91)
T 2l33_A 29 GLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFP 81 (91)
T ss_dssp SCEEEEEEEEECSSCEEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCC
T ss_pred CCeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHhh
Confidence 46676543 33344455544444444442 444456999999999999986654
No 60
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=68.80 E-value=1.2 Score=33.90 Aligned_cols=50 Identities=10% Similarity=0.044 Sum_probs=30.3
Q ss_pred Cccccccc-cCcCccccccccccccceeecCCCCCCcchHHHHhhhcccccc
Q 024888 115 QADYSSSS-LQSNVTADLHHNIQTAGRLVFNPNSMPKVQAEEIRELTTVNTE 165 (261)
Q Consensus 115 ~p~ft~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~kk~aee~~a~~~~~~~ 165 (261)
.|.|.+.. ...++...|...+.....+. .|..-+||+||+.||+.++..+
T Consensus 31 ~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~aL~~L 81 (97)
T 2dmy_A 31 GLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAM 81 (97)
T ss_dssp SCCCEEEEEESCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEeeCCCCCCeEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHh
Confidence 46676543 33444455544444434332 4444459999999999999854
No 61
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=65.81 E-value=1.2 Score=33.42 Aligned_cols=23 Identities=9% Similarity=-0.052 Sum_probs=17.5
Q ss_pred CCCCCcchHHHHhhhcccccccc
Q 024888 145 PNSMPKVQAEEIRELTTVNTEVA 167 (261)
Q Consensus 145 ~~~~~kk~aee~~a~~~~~~~~~ 167 (261)
|..-+||+||+.||+.++..+..
T Consensus 60 G~G~SKK~Aeq~AA~~aL~~L~~ 82 (90)
T 3llh_A 60 GQGPSKKAAKHKAAEVALKHLKG 82 (90)
T ss_dssp EEESSHHHHHHHHHHHHHHHHC-
T ss_pred EEeCCHHHHHHHHHHHHHHHHHh
Confidence 33445999999999999986544
No 62
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=65.09 E-value=1.4 Score=33.12 Aligned_cols=49 Identities=6% Similarity=-0.007 Sum_probs=27.6
Q ss_pred ccccccc-cCcCccccccccccccceeecCCCCCCcchHHHHhhhcccccc
Q 024888 116 ADYSSSS-LQSNVTADLHHNIQTAGRLVFNPNSMPKVQAEEIRELTTVNTE 165 (261)
Q Consensus 116 p~ft~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~kk~aee~~a~~~~~~~ 165 (261)
|.|.+.. ...++...|...+..... +..|..-+||+||+.||+.++..+
T Consensus 34 P~Y~~~~~~Gp~h~~~F~~~v~i~g~-~~~G~G~SKK~Aeq~AA~~AL~~L 83 (89)
T 2cpn_A 34 PEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRV 83 (89)
T ss_dssp CEEEEEEEECCSSSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeeECCCCCCeEEEEEEECCE-EEEeeeCCHHHHHHHHHHHHHHHH
Confidence 5666542 233344444333333332 223333449999999999998754
No 63
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=63.32 E-value=1.6 Score=32.82 Aligned_cols=21 Identities=10% Similarity=-0.077 Sum_probs=16.4
Q ss_pred CCCCCcchHHHHhhhcccccc
Q 024888 145 PNSMPKVQAEEIRELTTVNTE 165 (261)
Q Consensus 145 ~~~~~kk~aee~~a~~~~~~~ 165 (261)
|..-+||+||+.||+.++..+
T Consensus 62 G~G~SKK~Aeq~AA~~AL~~L 82 (88)
T 3adl_A 62 GSGTSKKLAKRNAAAKMLLRV 82 (88)
T ss_dssp EEESSHHHHHHHHHHHHHHHH
T ss_pred EeeCCHHHHHHHHHHHHHHHH
Confidence 334459999999999998754
No 64
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=59.03 E-value=2.1 Score=32.13 Aligned_cols=49 Identities=12% Similarity=0.006 Sum_probs=27.3
Q ss_pred ccccccc-cCcCccccccccccccceeecCCCCCCcchHHHHhhhcccccc
Q 024888 116 ADYSSSS-LQSNVTADLHHNIQTAGRLVFNPNSMPKVQAEEIRELTTVNTE 165 (261)
Q Consensus 116 p~ft~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~kk~aee~~a~~~~~~~ 165 (261)
|.|.+.. ...++...|...+..... +..|..-+||+||+.||+.++..+
T Consensus 24 P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L 73 (89)
T 1uhz_A 24 PDYILLSERGMPRRREFVMQVKVGNE-VATGTGPNKKIAKKNAAEAMLLQL 73 (89)
T ss_dssp CEEEEEEEESCSTTCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHH
Confidence 5666543 223333434333333222 223334459999999999999865
No 65
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=58.43 E-value=2.5 Score=33.95 Aligned_cols=18 Identities=6% Similarity=-0.212 Sum_probs=15.2
Q ss_pred CCCcchHHHHhhhccccc
Q 024888 147 SMPKVQAEEIRELTTVNT 164 (261)
Q Consensus 147 ~~~kk~aee~~a~~~~~~ 164 (261)
.-+||+||+.||+.++..
T Consensus 57 G~SKK~AEQ~AA~~AL~~ 74 (117)
T 1t4o_A 57 GRNIKIAGIRAAENALRD 74 (117)
T ss_dssp ESSHHHHHHHHHHHHHHC
T ss_pred eCCHHHHHHHHHHHHHHH
Confidence 335999999999999886
No 66
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=51.45 E-value=2.9 Score=31.22 Aligned_cols=18 Identities=11% Similarity=0.148 Sum_probs=15.5
Q ss_pred CCcchHHHHhhhcccccc
Q 024888 148 MPKVQAEEIRELTTVNTE 165 (261)
Q Consensus 148 ~~kk~aee~~a~~~~~~~ 165 (261)
-+||+||+.||+.++..+
T Consensus 55 ~SKK~Aeq~AA~~AL~~L 72 (88)
T 1x48_A 55 VTKQEAKQLAAKEAYQKL 72 (88)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 349999999999999865
No 67
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=47.90 E-value=3.8 Score=35.41 Aligned_cols=53 Identities=9% Similarity=-0.006 Sum_probs=0.0
Q ss_pred CccccccccCcCccccccccccccceeecCCCCCCcchHHHHhhhcccccccc
Q 024888 115 QADYSSSSLQSNVTADLHHNIQTAGRLVFNPNSMPKVQAEEIRELTTVNTEVA 167 (261)
Q Consensus 115 ~p~ft~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~kk~aee~~a~~~~~~~~~ 167 (261)
.|.|.+.....++...+.+.+-..+.++..|..-+||+||+.||+.+++.+..
T Consensus 179 ~p~Y~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~skk~Ae~~AA~~AL~~L~~ 231 (242)
T 2a11_A 179 APSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEV 231 (242)
T ss_dssp -----------------------------------------------------
T ss_pred CCeEEEeccCCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHhh
Confidence 48887765333444445444444444334444445999999999999986543
No 68
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=39.58 E-value=6.8 Score=34.20 Aligned_cols=52 Identities=10% Similarity=0.091 Sum_probs=32.2
Q ss_pred Cccccccc-cCcCccccccccccccceeecCCCCCCcchHHHHhhhccccccc
Q 024888 115 QADYSSSS-LQSNVTADLHHNIQTAGRLVFNPNSMPKVQAEEIRELTTVNTEV 166 (261)
Q Consensus 115 ~p~ft~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~kk~aee~~a~~~~~~~~ 166 (261)
.|.|.+.. ...+..+.+.+.+...+.++..|...+||+||+.||+.+++.+.
T Consensus 196 ~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~ 248 (252)
T 1o0w_A 196 PPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKLL 248 (252)
T ss_dssp CCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CceEEEEeeeCCCCCCeEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHh
Confidence 47887654 23334444544444444444444444699999999999987543
No 69
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=30.18 E-value=11 Score=31.98 Aligned_cols=50 Identities=10% Similarity=0.015 Sum_probs=28.6
Q ss_pred Ccccccccc-CcCccccccccccccceeecCCCCCCcchHHHHhhhcccccc
Q 024888 115 QADYSSSSL-QSNVTADLHHNIQTAGRLVFNPNSMPKVQAEEIRELTTVNTE 165 (261)
Q Consensus 115 ~p~ft~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~kk~aee~~a~~~~~~~ 165 (261)
.|.|..... ..++...+.+.+...+. +..|..-+||+||+.||+.++..+
T Consensus 167 ~p~Y~~~~~~G~~h~~~F~v~v~v~~~-~~~G~G~skK~Ae~~AA~~AL~~L 217 (221)
T 2nug_A 167 RPEYRLISVEGPHHKKKFIVEAKIKEY-RTLGEGKSKKEAEQRAAEELIKLL 217 (221)
T ss_dssp CCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEeeCCCCCceEEEEEEECCE-EEEEecCCHHHHHHHHHHHHHHHh
Confidence 378876532 22333444333333333 333333449999999999998743
No 70
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=28.95 E-value=12 Score=32.78 Aligned_cols=51 Identities=8% Similarity=0.119 Sum_probs=0.0
Q ss_pred Ccccccccc-CcCccccccccccccceeecCCCCCCcchHHHHhhhcccccc
Q 024888 115 QADYSSSSL-QSNVTADLHHNIQTAGRLVFNPNSMPKVQAEEIRELTTVNTE 165 (261)
Q Consensus 115 ~p~ft~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~kk~aee~~a~~~~~~~ 165 (261)
.|.|.+... ..+..+.+.+.+...+.++..|...+||+||+.||+.+++.+
T Consensus 194 ~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L 245 (248)
T 3n3w_A 194 TPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKL 245 (248)
T ss_dssp ----------------------------------------------------
T ss_pred CCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHH
Confidence 377876532 222333343333333333334444459999999999998744
No 71
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=28.58 E-value=21 Score=27.40 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=16.2
Q ss_pred ceeeEEEecCCCC--------ccc-CCCceee
Q 024888 223 TCKIIRVRPNRPN--------MKF-PEGSSVL 245 (261)
Q Consensus 223 ~~~~~~~~~~~~~--------~~~-p~g~tvl 245 (261)
..+.|+|||..+. +.+ |.|+||+
T Consensus 8 ~L~lIrVYtk~~G~~pd~~dpviL~~~GsTv~ 39 (93)
T 2eki_A 8 YLKLVRIYTKPKGQLPDYTSPVVLPYSRTTVE 39 (93)
T ss_dssp SCCEEEEEECCTTSCCCSSSCEEEETTSCCHH
T ss_pred hcCeEEEEeCCCCCCCCCCCCEEEecCCCCHH
Confidence 3478999994332 677 8888875
No 72
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=27.95 E-value=17 Score=26.65 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=16.5
Q ss_pred eeEEEe-cCCCCcccCCCceee
Q 024888 225 KIIRVR-PNRPNMKFPEGSSVL 245 (261)
Q Consensus 225 ~~~~~~-~~~~~~~~p~g~tvl 245 (261)
++|.|+ |.+--+.||+|+|++
T Consensus 6 ~~i~v~tP~G~~~~lp~GaT~~ 27 (78)
T 3hvz_A 6 EEVFVFTPKGDVISLPIGSTVI 27 (78)
T ss_dssp CEEEEECTTSCEEEEETTCBHH
T ss_pred ceEEEECCCCCEEEecCCCCHH
Confidence 456666 678888899999986
No 73
>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protei structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A*
Probab=23.05 E-value=40 Score=30.93 Aligned_cols=17 Identities=29% Similarity=0.560 Sum_probs=14.2
Q ss_pred CCceeee-cCCcEEEEec
Q 024888 240 EGSSVLH-RDNQWVAWTD 256 (261)
Q Consensus 240 ~g~tvl~-~~~~wva~~~ 256 (261)
++-||.| .|+.||||..
T Consensus 255 ~~PTVspL~~~~wvAV~~ 272 (304)
T 1nh8_A 255 ESPTIAPLADPDWVAIRA 272 (304)
T ss_dssp SSCEEEECSSTTEEEEEE
T ss_pred CCCeeeecCCCCeEEEEE
Confidence 4779999 8888999863
Done!