BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024889
(261 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9BX46|RBM24_HUMAN RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1
Length = 236
Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/133 (48%), Positives = 79/133 (59%), Gaps = 10/133 (7%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DTTYTK+FVGGL + T ++R+YFE FGEI EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 88 RACADPTPFIDGRLRPATL-FSGSTQATRGPYIGSFGYQQPLPYNYQQGMVYPSYGYATY 146
RAC DP P IDGR L + G+ P +FG QQ P Q+ P++
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAKPRIMQPGF-AFGVQQLHPALIQRPFGIPAH----- 120
Query: 147 GPEYVYPQGIYNP 159
YVYPQ P
Sbjct: 121 ---YVYPQAFVQP 130
>sp|Q5ZMA3|RBM24_CHICK RNA-binding protein 24 OS=Gallus gallus GN=RBM24 PE=2 SV=2
Length = 225
Score = 111 bits (277), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/133 (47%), Positives = 79/133 (59%), Gaps = 10/133 (7%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DTTYTK+FVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 88 RACADPTPFIDGRLRPATL-FSGSTQATRGPYIGSFGYQQPLPYNYQQGMVYPSYGYATY 146
RAC DP P IDGR L + G+ P +FG QQ P Q+ P++
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAKPRIMQPGF-AFGVQQLHPALIQRPFGIPAH----- 120
Query: 147 GPEYVYPQGIYNP 159
YVYPQ P
Sbjct: 121 ---YVYPQAFVQP 130
>sp|D3Z4I3|RBM24_MOUSE RNA-binding protein 24 OS=Mus musculus GN=Rbm24 PE=3 SV=1
Length = 236
Score = 110 bits (276), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 63/133 (47%), Positives = 79/133 (59%), Gaps = 10/133 (7%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DTTYTK+FVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 88 RACADPTPFIDGRLRPATL-FSGSTQATRGPYIGSFGYQQPLPYNYQQGMVYPSYGYATY 146
RAC DP P IDGR L + G+ P +FG QQ P Q+ P++
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAKPRIMQPGF-AFGVQQLHPALIQRPFGIPAH----- 120
Query: 147 GPEYVYPQGIYNP 159
YVYPQ P
Sbjct: 121 ---YVYPQAFVQP 130
>sp|Q6GQD3|RB24A_XENLA RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-a PE=2 SV=1
Length = 225
Score = 110 bits (276), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 63/133 (47%), Positives = 79/133 (59%), Gaps = 10/133 (7%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DTTYTK+FVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 88 RACADPTPFIDGRLRPATL-FSGSTQATRGPYIGSFGYQQPLPYNYQQGMVYPSYGYATY 146
RAC DP P IDGR L + G+ P +FG QQ P Q+ P++
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAKPRIMQPGF-AFGVQQIHPALIQRPFGIPAH----- 120
Query: 147 GPEYVYPQGIYNP 159
YVYPQ P
Sbjct: 121 ---YVYPQAYVQP 130
>sp|Q6P8A7|RBM24_XENTR RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1
Length = 226
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/133 (46%), Positives = 78/133 (58%), Gaps = 10/133 (7%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DTTYTK+FVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 88 RACADPTPFIDGRLRPATL-FSGSTQATRGPYIGSFGYQQPLPYNYQQGMVYPSYGYATY 146
RAC DP P IDGR L + G+ P +FG QQ P Q+ P++
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAKPRIMQPGF-AFGVQQIHPALIQRPFGIPAH----- 120
Query: 147 GPEYVYPQGIYNP 159
YVYP P
Sbjct: 121 ---YVYPHAFVQP 130
>sp|Q5ZJX4|RBM38_CHICK RNA-binding protein 38 OS=Gallus gallus GN=RBM38 PE=2 SV=1
Length = 215
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 81/140 (57%), Gaps = 24/140 (17%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DTT+TK+FVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 7 DTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 88 RACADPTPFIDGRLRPATLFSGSTQATRGPYIGSFGYQQPLPYNYQQGM------VYPSY 141
RAC DP P IDGR L Y+G+ P + Q G ++P++
Sbjct: 67 RACKDPNPIIDGRKANVNL----------AYLGA------KPRSIQTGFTIGVQQLHPAF 110
Query: 142 GYATYG--PEYVYPQGIYNP 159
+G P YVYPQ I P
Sbjct: 111 IQRPFGLTPHYVYPQAIIQP 130
>sp|Q9H0Z9|RBM38_HUMAN RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2
Length = 239
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 80/140 (57%), Gaps = 24/140 (17%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DTT+TK+FVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 30 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89
Query: 88 RACADPTPFIDGRLRPATLFSGSTQATRGPYIGSFGYQQPLPYNYQQGM------VYPSY 141
RAC DP P IDGR L Y+G+ P + Q G ++P+
Sbjct: 90 RACKDPNPIIDGRKANVNLA----------YLGA------KPRSLQTGFAIGVQQLHPTL 133
Query: 142 GYATYG--PEYVYPQGIYNP 159
TYG P Y+YP I P
Sbjct: 134 IQRTYGLTPHYIYPPAIVQP 153
>sp|Q9I8B3|RB24B_XENLA RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-b PE=2 SV=1
Length = 224
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 81/135 (60%), Gaps = 10/135 (7%)
Query: 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81
+++ DTTYTK+FVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT
Sbjct: 1 MHTTQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMA 60
Query: 82 EPEAARRACADPTPFIDGRLRPATL-FSGSTQATRGPYIGSFGYQQPLPYNYQQGMVYPS 140
+ AA RAC DP P IDGR L + G+ P +FG QQ P +V
Sbjct: 61 DRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGF-AFGVQQIHP-----ALVQRP 114
Query: 141 YGYATYGPEYVYPQG 155
YG + YVYPQ
Sbjct: 115 YGIPAH---YVYPQA 126
>sp|Q76LC6|RBM24_DANRE RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1
Length = 230
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/133 (48%), Positives = 79/133 (59%), Gaps = 10/133 (7%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DTTYTK+FVGGL + T ++R+YFE FGEI EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAD 66
Query: 88 RACADPTPFIDGRLRPATL-FSGSTQATRGPYIGSFGYQQPLPYNYQQGMVYPSYGYATY 146
RAC DP P IDGR L + G+ P +FG Q P Q+ YG T+
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAKPRVMQPGF-TFGVPQIHPAFIQR-----PYGIPTH 120
Query: 147 GPEYVYPQGIYNP 159
YVYPQ P
Sbjct: 121 ---YVYPQAFMQP 130
>sp|Q6DIV4|RBM38_XENTR RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1
Length = 219
Score = 108 bits (269), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 78/134 (58%), Gaps = 12/134 (8%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DTT+TK+FVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 7 DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAE 66
Query: 88 RACADPTPFIDGRLRPATLFSGSTQATRGPYIGSFGYQQPLPYNYQQGMVYPSYGYATYG 147
RAC DP P IDGR L + + G QQ ++P++ +G
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAKPRNLQSAFTIGVQQ----------LHPAFIQRPFG 116
Query: 148 --PEYVYPQGIYNP 159
P+Y+YP I P
Sbjct: 117 LTPQYIYPPAIVQP 130
>sp|Q7T3I7|RBM38_XENLA RNA-binding protein 38 OS=Xenopus laevis GN=rbm38 PE=1 SV=2
Length = 214
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 77/134 (57%), Gaps = 12/134 (8%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DTT+TK+FVGGL + T ++R+YFE FG+I EAVVITD+ T +S+GYGFVT + AA
Sbjct: 7 DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTAKSRGYGFVTMSDRAAAE 66
Query: 88 RACADPTPFIDGRLRPATLFSGSTQATRGPYIGSFGYQQPLPYNYQQGMVYPSYGYATYG 147
RAC DP P IDGR L + + G QQ ++P++ +G
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAKPRNLQSAFTIGVQQ----------LHPAFIQRPFG 116
Query: 148 --PEYVYPQGIYNP 159
P+Y+YP I P
Sbjct: 117 LTPQYIYPPTIVQP 130
>sp|Q62176|RBM38_MOUSE RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE=1 SV=2
Length = 237
Score = 100 bits (250), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 87/161 (54%), Gaps = 30/161 (18%)
Query: 7 PGPGSGSSSSSGFQYLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITD 66
P P + S+ G Q DTT+TK+FVGGL + T ++R+YFE FG+I EAVVITD
Sbjct: 13 PRPSAAPSAMHGSQ------KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITD 66
Query: 67 KNTGRSKGYGFVTFREPEAARRACADPTPFIDGRLRPATLFSGSTQATRGPYIGSFGYQQ 126
+ TG+S+GYGFVT + AA RAC DP P IDGR L Y+G+
Sbjct: 67 RQTGKSRGYGFVTMADRAAADRACKDPNPIIDGRKANVNLA----------YLGA----- 111
Query: 127 PLPYNYQQGM------VYPSYGYATYG--PEYVYPQGIYNP 159
P + Q G ++P+ TYG P Y+YP I P
Sbjct: 112 -KPRSLQTGFAVGVQQLHPTLIQRTYGLTPHYIYPPAIVQP 151
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 81.6 bits (200), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 88/192 (45%), Gaps = 25/192 (13%)
Query: 5 SIPGPGSGSSSSSGFQYLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVI 64
++ G G+ S+ + SPF + K+F+GGL WET +++R YFEQFGE+L+ V+
Sbjct: 138 ALTGSGAMESNEDNAEET-SPF-NREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVM 195
Query: 65 TDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRL-------------RPATLFSG-- 109
D TGRS+G+GF+TF+ P+ + +DG++ + A +F G
Sbjct: 196 RDSTTGRSRGFGFLTFKNPKCVNEVMS-KEHHLDGKIIDPKRAIPREEQEKTAKMFVGGV 254
Query: 110 ---STQATRGPYIGSFGYQQPLPYNYQQGMVYPS-YGYATYGPEYVYPQGIYNPYQQYVP 165
T+ + FG + P +G+ TY E + P Y+
Sbjct: 255 PGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQP---YIT 311
Query: 166 IYGVPGTVNTAV 177
I+G P V A
Sbjct: 312 IHGKPVEVKRAT 323
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 46/68 (67%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL+WET E + RYF +FG+I++ VV+ + +GRS+G+GFVTF +P +
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 93 PTPFIDGR 100
+DGR
Sbjct: 68 GPHTLDGR 75
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
KVF+GGL +R +F ++G++ E V++ D+ +S+G+GF++F E + +
Sbjct: 97 KVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNE 156
Query: 93 PTPFIDGR 100
++G+
Sbjct: 157 RYINLNGK 164
>sp|Q03251|RBG8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=RBG8
PE=1 SV=1
Length = 169
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
+ FVGGLAW T E ++R F QFG+++++ +I D+ +GRS+G+GFVTF++ +A R A +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 93 PT-PFIDGRL 101
+DGR+
Sbjct: 67 MNGKELDGRV 76
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens
GN=HNRNPAB PE=1 SV=2
Length = 332
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
Query: 9 PGSGSSSSSGFQYLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKN 68
P SG+ + + +N+ + K+FVGGL+W+T + ++ YF +FGE+++ + D N
Sbjct: 46 PPSGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPN 105
Query: 69 TGRSKGYGFVTFREPEAARRACADPTPFIDGR-LRPATLFSGSTQATRGPYIGSFGYQQP 127
TGRS+G+GF+ F++ + + +DGR + P + + ++G + P
Sbjct: 106 TGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPESP 165
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 32 TKVFVGGLAWET-QSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC 90
K+FVGGL E+ E +R YF +FGEI + D + +G+ F+TF+E E ++
Sbjct: 153 KKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVL 212
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1
Length = 407
Score = 75.1 bits (183), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 45/68 (66%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL W T ET+R YF Q+GE+++ V++ DK T +S+G+GFV F++P A
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 93 PTPFIDGR 100
+DGR
Sbjct: 71 RPHTLDGR 78
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
++ K+FVGG+ +R YF++FG + E V+I D R +G+GF+TF + ++
Sbjct: 109 NSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVD 168
Query: 88 RA 89
+A
Sbjct: 169 QA 170
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2
Length = 406
Score = 75.1 bits (183), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81
+NS D K+FVGGL W T ET+R YF Q+GE+++ V++ DK T +S+G+GFV F+
Sbjct: 1 MNSAGADEI-GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFK 59
Query: 82 EPEAARRACADPTPFIDGR 100
+P A +DGR
Sbjct: 60 DPNCVGTVLASRPHTLDGR 78
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 21 YLNSPFGDTTYT-KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVT 79
+ P D++ + K+FVGG+ +R YF++FG + E V+I D R +G+GF+T
Sbjct: 101 WQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFIT 160
Query: 80 FREPEAARRA 89
F + ++ +A
Sbjct: 161 FEDEQSVDQA 170
>sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1
Length = 360
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81
+N+ GD K+FVGGL W T ET+R YF Q+GE+++ V++ DK T +S+G+GFV F+
Sbjct: 1 MNNQGGDEI-GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFK 59
Query: 82 EPEAARRACADPTPFIDGR 100
+P A +DGR
Sbjct: 60 DPNCVGTVLASRPHTLDGR 78
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%)
Query: 13 SSSSSGFQYLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRS 72
S G+Q ++ K+FVGG+ ++ YF +FG + E V+I D R
Sbjct: 95 SRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRP 154
Query: 73 KGYGFVTFREPEAARRA 89
+G+GF+TF + ++ +A
Sbjct: 155 RGFGFITFEDEQSVDQA 171
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus
GN=Hnrnpab PE=1 SV=1
Length = 285
Score = 74.3 bits (181), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
Query: 11 SGSSSSSGFQYLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTG 70
SG+ + + +N+ + K+FVGGL+W+T + ++ YF +FGE+++ + D NTG
Sbjct: 54 SGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTG 113
Query: 71 RSKGYGFVTFREPEAARRACADPTPFIDGR-LRPATLFSGSTQATRGPYIG 120
RS+G+GF+ F++ + + +DGR + P + + ++G
Sbjct: 114 RSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 164
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRA 89
K+FVGGL E E +R YF QFGEI + D + +G+ F+TF+E + ++
Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKV 216
>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1
SV=1
Length = 346
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T +++R YF +FGEI E +V+ D T RS+G+GFVTF +P + +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 93 PTPFIDGR-LRPATLF 107
P +D + + P F
Sbjct: 82 PHHELDSKTIDPKVAF 97
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 42/62 (67%)
Query: 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
T K+FVGGL+ T E +++YFEQFG++ +A+++ DK T R +G+GFVTF + +
Sbjct: 107 TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 166
Query: 89 AC 90
C
Sbjct: 167 VC 168
>sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1
SV=1
Length = 328
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T +++R YF +FGEI E +V+ D T RS+G+GFVTF +P + +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 93 PTPFIDGR-LRPATLF 107
P +D + + P F
Sbjct: 82 PHHELDSKTIDPKVAF 97
Score = 67.4 bits (163), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 42/62 (67%)
Query: 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
T K+FVGGL+ T E +++YFEQFG++ +A+++ DK T R +G+GFVTF + +
Sbjct: 107 TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 166
Query: 89 AC 90
C
Sbjct: 167 VC 168
>sp|Q9VVE5|MSIR6_DROME RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster
GN=Rbp6 PE=2 SV=3
Length = 369
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 48/68 (70%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T E++R YF ++G+I EA+V+ D T RS+G+GFVTF +P + +
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 89
Query: 93 PTPFIDGR 100
T +DG+
Sbjct: 90 GTHELDGK 97
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 41/62 (66%)
Query: 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
T K+FVGGL+ T E ++ YFEQFG I +A+++ DK T R +G+GFVTF+ + +
Sbjct: 115 TRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDK 174
Query: 89 AC 90
C
Sbjct: 175 VC 176
>sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1
Length = 157
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 43/57 (75%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRA 89
+ FVGGLAW T E++ + F QFG+I ++ +I D+ TGRS+G+GFVTF++ ++ R A
Sbjct: 7 RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDA 63
>sp|Q9SIX3|RBG1_ARATH Probable glycine-rich RNA-binding protein 1 OS=Arabidopsis
thaliana GN=RBG1 PE=2 SV=2
Length = 149
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPE 84
+ D Y + FVGGLAW T +++ R F +FGE+ ++ +I D+ TGRSKG+ FVTF++ +
Sbjct: 2 AYADNEY-RCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDED 60
Query: 85 AARRA 89
+ R A
Sbjct: 61 SMRTA 65
>sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2
SV=1
Length = 168
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
D Y + FVGGLAW T +ET+ + F FG+++++ VITD+ TGRS+G+GFVTF ++
Sbjct: 5 DVEY-RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSML 63
Query: 88 RACADPT-PFIDGR 100
A + +DGR
Sbjct: 64 DAIENMNGKELDGR 77
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2
SV=1
Length = 169
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
+ FVGGLAW T + R F QFGE++++ +I D+ TGRS+G+GFVTF++ ++ + A +
Sbjct: 7 RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDE 66
Query: 93 PT-PFIDGR 100
+DGR
Sbjct: 67 MNGKELDGR 75
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
D+ K+FVGG++WET + +R +F +GE+ +A+V+ DK TGR +G+GFV F +P
Sbjct: 2 DSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLD 61
Query: 88 RACADPTPFIDGR 100
R + ID R
Sbjct: 62 RVLQEKHS-IDTR 73
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEA 85
K+FVGGL E R+YFE +G + + ++ D+ T R +G+GFV+F +A
Sbjct: 111 KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDA 163
>sp|Q9SVM8|RBG2_ARATH Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis
thaliana GN=RBG2 PE=1 SV=1
Length = 158
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 47/69 (68%), Gaps = 4/69 (5%)
Query: 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACA 91
TK+F+GGL+W T ++R F FG++++A VI D+ TGRS+G+GFV F + AA A +
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 92 DPTPFIDGR 100
+ +DG+
Sbjct: 95 E----MDGK 99
>sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea
mays GN=RAB15 PE=1 SV=1
Length = 157
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAA 86
D Y + FVGGLAW T +E++ F +GEIL++ VITD+ TGRS+G+GFVTF +
Sbjct: 4 ADVEY-RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSM 62
Query: 87 RRACADPT-PFIDGR 100
A + +DGR
Sbjct: 63 LDAIENMNGKELDGR 77
>sp|Q9LIS2|RBG4_ARATH Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis
thaliana GN=RBG4 PE=2 SV=1
Length = 136
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 47/69 (68%), Gaps = 4/69 (5%)
Query: 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACA 91
+K+FVGGL+W T ++++ F FGE+ EA VI D+ TGRS+G+GFV+F ++A A
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 92 DPTPFIDGR 100
+ +DG+
Sbjct: 95 E----MDGK 99
>sp|Q03250|RBG7_ARATH Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana
GN=RBG7 PE=1 SV=1
Length = 176
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAA 86
GD Y + FVGGLAW T + F Q+G+++++ +I D+ TGRS+G+GFVTF++ +A
Sbjct: 4 GDVEY-RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAM 62
Query: 87 RRA 89
+ A
Sbjct: 63 KDA 65
>sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1
Length = 169
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 42/57 (73%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRA 89
+ FVGGLAW T ++ F QFGE++++ +I D+ TGRS+G+GFVTF++ ++ + A
Sbjct: 9 RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDA 65
>sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1
SV=1
Length = 362
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81
L SP K+F+GGL+W+T E +R YF QFGE+ E +V+ D T RS+G+GFVTF
Sbjct: 10 LASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM 69
Query: 82 EPEAARRACADPTPFIDGR-LRPATLF 107
+ + A +D + + P F
Sbjct: 70 DQAGVDKVLAQSRHELDSKTIDPKVAF 96
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 41/62 (66%)
Query: 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
T K+FVGGL+ T E ++ YFEQFG++ +A+++ DK T R +G+GFVTF + +
Sbjct: 106 TRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 165
Query: 89 AC 90
C
Sbjct: 166 VC 167
>sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1
Length = 166
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 41/57 (71%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRA 89
+ FVGGLAW T + F Q+GE+L++ +I D+ TGRS+G+GFVTF++ ++ + A
Sbjct: 9 RCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDA 65
>sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1
PE=2 SV=1
Length = 362
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81
L SP K+F+GGL+W+T E +R YF QFGE+ E +V+ D T RS+G+GFVTF
Sbjct: 10 LASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM 69
Query: 82 EPEAARRACADPTPFIDGR-LRPATLF 107
+ + A +D + + P F
Sbjct: 70 DQAGVDKVLAQSRHELDSKTIDPKVAF 96
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 41/62 (66%)
Query: 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
T K+FVGGL+ T E ++ YFEQFG++ +A+++ DK T R +G+GFVTF + +
Sbjct: 106 TRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 165
Query: 89 AC 90
C
Sbjct: 166 VC 167
>sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1
SV=1
Length = 362
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81
L SP K+F+GGL+W+T E +R YF QFGE+ E +V+ D T RS+G+GFVTF
Sbjct: 10 LASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM 69
Query: 82 EPEAARRACADPTPFIDGR-LRPATLF 107
+ + A +D + + P F
Sbjct: 70 DQAGVDKVLAQSRHELDSKTIDPKVAF 96
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 42/62 (67%)
Query: 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
T K+FVGGL+ T E +++YFEQFG++ +A+++ DK T R +G+GFVTF + +
Sbjct: 106 TRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 165
Query: 89 AC 90
C
Sbjct: 166 VC 167
>sp|Q6NU14|HNDLB_XENLA Heterogeneous nuclear ribonucleoprotein D-like-B OS=Xenopus laevis
GN=hnrpdl-b PE=2 SV=1
Length = 291
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 45/70 (64%)
Query: 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACA 91
+K+F+GGL+W+T + + Y +FGE+L+ + TD TGRS+G+GFV F++ + +
Sbjct: 34 SKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLE 93
Query: 92 DPTPFIDGRL 101
+DG+L
Sbjct: 94 TKEHKLDGKL 103
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
KVFVGGL+ ET E +++YF FGEI + D T +G+ FVT+ + E ++
Sbjct: 120 KVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTDEEPVQK 175
>sp|Q43472|GRP_HORVU Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare
GN=blt801 PE=1 SV=1
Length = 161
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEA 85
D Y + FVGGL W T ++++ F ++G+++++ +ITD+ TGRS+G+GFVTF EA
Sbjct: 1 MADVEY-RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEA 59
Query: 86 ARRA 89
R+A
Sbjct: 60 MRQA 63
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRA-CA 91
K+FVGGL +ET E++ + F ++G++ E VV+ D+ + RS+G+GFVTF PE A+ A A
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 92 DPTPFIDGR 100
+DGR
Sbjct: 67 MNGKSVDGR 75
>sp|Q08473|SQD_DROME RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1
SV=3
Length = 344
Score = 67.8 bits (164), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 16/145 (11%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL+WET + +R +F ++GEI V TD TGRS+G+ F+ F EA + A
Sbjct: 57 KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAA 116
Query: 93 PTPFID--------GRLRPATLFSG--STQATRGP---YIGSFG--YQQPLPYNYQQGMV 137
I+ + R +F G +T+ + Y G FG + +P++ Q+
Sbjct: 117 DEHIINSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQ- 175
Query: 138 YPSYGYATYGPEYVYPQGIYNPYQQ 162
+ + T+ E V + P Q+
Sbjct: 176 RKGFCFITFDSEQVVTDLLKTPKQK 200
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL E E ++ YF QFG I+E + DK + KG+ F+TF +
Sbjct: 137 KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKT 196
Query: 93 PTPFIDGR 100
P I G+
Sbjct: 197 PKQKIAGK 204
>sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis
thaliana GN=RBG3 PE=2 SV=1
Length = 309
Score = 67.4 bits (163), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 4/69 (5%)
Query: 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACA 91
+K+F+GG+A+ +++R F ++GE+++ VI D+ TGRS+G+GFVTF EAA A
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI- 98
Query: 92 DPTPFIDGR 100
+DGR
Sbjct: 99 ---QALDGR 104
>sp|Q640A2|HNRDL_XENTR Heterogeneous nuclear ribonucleoprotein D-like OS=Xenopus
tropicalis GN=hnrpdl PE=2 SV=1
Length = 297
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 44/69 (63%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T + + Y +FGE+++ + TD TGRS+G+GFV F++ + +
Sbjct: 27 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLET 86
Query: 93 PTPFIDGRL 101
+DG+L
Sbjct: 87 KEHKLDGKL 95
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
KVFVGGL+ ET E +++YF FGEI + D T +G+ FVT+ E ++
Sbjct: 112 KVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTGEEPVKK 167
>sp|Q7ZX83|HNDLA_XENLA Heterogeneous nuclear ribonucleoprotein D-like-A OS=Xenopus laevis
GN=hnrpdl-a PE=2 SV=1
Length = 293
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 44/69 (63%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T + + Y +FGE+L+ + TD TGRS+G+GFV F++ + +
Sbjct: 27 KMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLET 86
Query: 93 PTPFIDGRL 101
+DG+L
Sbjct: 87 NEHKLDGKL 95
Score = 44.3 bits (103), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
KVFVGGL+ ET E +++YF FGEI + D T +G+ FVT+ E ++
Sbjct: 112 KVFVGGLSPETTEEQIKQYFGGFGEIENIELPIDTKTNERRGFCFVTYTGEEPVKK 167
>sp|Q3SWU3|HNRDL_RAT Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus
GN=Hnrpdl PE=2 SV=1
Length = 322
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 46/73 (63%)
Query: 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
T+ K+F+GGL+W+T + + Y +FGE+++ + TD TGRS+G+GFV F++ + +
Sbjct: 48 TSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 107
Query: 89 ACADPTPFIDGRL 101
+DG+L
Sbjct: 108 VLELKEHKLDGKL 120
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
KVFVGGL+ +T E ++ YF FGEI + D T +G+ F+T+ + E ++
Sbjct: 137 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 192
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b
PE=1 SV=1
Length = 166
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRA-CA 91
K+F+GGL ++T E++ + F ++G+I E VV+ D+ T RS+G+GFVTF P+ A+ A A
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65
Query: 92 DPTPFIDGR 100
+DGR
Sbjct: 66 MNGKAVDGR 74
>sp|Q32P51|RA1L2_HUMAN Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens
GN=HNRNPA1L2 PE=2 SV=2
Length = 320
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 49/70 (70%), Gaps = 2/70 (2%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL++ET E++R +FEQ+G + + VV+ D NT RS+G+GFVT+ E A +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV-DAAMN 73
Query: 93 PTPF-IDGRL 101
TP +DGR+
Sbjct: 74 TTPHKVDGRV 83
Score = 57.4 bits (137), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 40/59 (67%)
Query: 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
T K+FVGG+ +T+ +R YFEQ+G+I ++TD+ +G+ +G+ FVTF + ++ +
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
>sp|Q5ZI72|HNRDL_CHICK Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus
GN=HNRPDL PE=2 SV=1
Length = 301
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 44/69 (63%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T + + Y +FGE+++ + TD TGRS+G+GFV F++ + +
Sbjct: 31 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 90
Query: 93 PTPFIDGRL 101
+DG+L
Sbjct: 91 KEHKLDGKL 99
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
KVFVGGL+ +T E ++ YF FGEI + D T +G+ F+T+ + E ++
Sbjct: 116 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 171
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens
GN=HNRNPD PE=1 SV=1
Length = 355
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 46/69 (66%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T + ++ YF +FGE+++ + D TGRS+G+GFV F+E E+ +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 93 PTPFIDGRL 101
++G++
Sbjct: 158 KEHKLNGKV 166
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
K+FVGGL+ +T E +R YF FGE+ + D T + +G+ F+TF+E E ++
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 44/69 (63%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T + + Y +FGE+++ + TD TGRS+G+GFV F++ + +
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 93 PTPFIDGRL 101
+DG+L
Sbjct: 209 KEHKLDGKL 217
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
KVFVGGL+ +T E ++ YF FGEI + D T +G+ F+T+ + E ++
Sbjct: 233 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 289
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.137 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,659,009
Number of Sequences: 539616
Number of extensions: 5465986
Number of successful extensions: 14648
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 262
Number of HSP's that attempted gapping in prelim test: 13215
Number of HSP's gapped (non-prelim): 1483
length of query: 261
length of database: 191,569,459
effective HSP length: 115
effective length of query: 146
effective length of database: 129,513,619
effective search space: 18908988374
effective search space used: 18908988374
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)