Query 024889
Match_columns 261
No_of_seqs 272 out of 2088
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 08:13:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024889.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024889hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0149 Predicted RNA-binding 99.9 1.2E-23 2.6E-28 179.9 15.3 86 23-108 4-89 (247)
2 PLN03134 glycine-rich RNA-bind 99.8 8.1E-19 1.8E-23 143.3 13.6 83 28-110 31-114 (144)
3 TIGR01659 sex-lethal sex-letha 99.7 2.8E-17 6.1E-22 152.0 13.2 100 26-125 102-204 (346)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1E-16 2.3E-21 147.5 12.0 83 28-110 266-349 (352)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 9.3E-17 2E-21 147.8 11.2 96 30-125 2-100 (352)
6 TIGR01628 PABP-1234 polyadenyl 99.7 1.4E-15 3.1E-20 148.9 16.3 82 28-110 282-364 (562)
7 TIGR01659 sex-lethal sex-letha 99.7 4.8E-16 1E-20 143.8 11.1 81 28-108 190-271 (346)
8 PF00076 RRM_1: RNA recognitio 99.6 6.9E-16 1.5E-20 108.8 7.8 68 34-102 1-69 (70)
9 KOG0148 Apoptosis-promoting RN 99.6 1.7E-15 3.6E-20 132.3 11.3 73 28-106 161-234 (321)
10 KOG0144 RNA-binding protein CU 99.6 6.1E-16 1.3E-20 142.2 8.9 104 21-124 24-134 (510)
11 KOG0125 Ataxin 2-binding prote 99.6 5.6E-16 1.2E-20 138.3 8.4 90 25-116 90-180 (376)
12 KOG0117 Heterogeneous nuclear 99.6 1.4E-15 3E-20 140.4 9.1 93 29-125 81-175 (506)
13 TIGR01645 half-pint poly-U bin 99.6 4.4E-15 9.6E-20 145.1 10.4 78 29-106 105-183 (612)
14 KOG0113 U1 small nuclear ribon 99.6 8.4E-15 1.8E-19 129.4 9.9 90 25-114 95-185 (335)
15 TIGR01648 hnRNP-R-Q heterogene 99.6 8.6E-15 1.9E-19 142.7 10.8 76 29-105 56-133 (578)
16 TIGR01645 half-pint poly-U bin 99.6 9.4E-15 2E-19 142.9 10.1 81 29-109 202-283 (612)
17 KOG0122 Translation initiation 99.6 2E-14 4.4E-19 123.9 10.7 81 28-108 186-267 (270)
18 PF14259 RRM_6: RNA recognitio 99.6 1.5E-14 3.2E-19 102.8 7.9 68 34-102 1-69 (70)
19 KOG0148 Apoptosis-promoting RN 99.6 8.6E-15 1.9E-19 127.9 7.5 78 31-108 62-140 (321)
20 KOG0121 Nuclear cap-binding pr 99.5 9.4E-15 2E-19 114.8 6.8 84 28-111 33-117 (153)
21 TIGR01628 PABP-1234 polyadenyl 99.5 2.6E-14 5.6E-19 140.0 10.8 75 33-107 2-77 (562)
22 PLN03120 nucleic acid binding 99.5 6.9E-14 1.5E-18 123.2 9.9 74 31-108 4-78 (260)
23 KOG0144 RNA-binding protein CU 99.5 1.6E-14 3.5E-19 132.9 5.0 83 30-113 123-207 (510)
24 KOG0107 Alternative splicing f 99.5 7.7E-14 1.7E-18 115.1 8.1 79 30-113 9-88 (195)
25 TIGR01642 U2AF_lg U2 snRNP aux 99.5 2.5E-13 5.3E-18 131.2 12.1 81 28-108 292-373 (509)
26 KOG0126 Predicted RNA-binding 99.5 5.5E-15 1.2E-19 122.5 -0.2 78 29-106 33-111 (219)
27 KOG4207 Predicted splicing fac 99.5 6.8E-14 1.5E-18 118.2 6.2 81 27-107 9-90 (256)
28 smart00362 RRM_2 RNA recogniti 99.5 3.6E-13 7.9E-18 93.7 8.8 70 33-104 1-71 (72)
29 smart00360 RRM RNA recognition 99.5 3.7E-13 8E-18 93.2 8.5 69 36-104 1-70 (71)
30 COG0724 RNA-binding proteins ( 99.5 3E-13 6.4E-18 116.7 9.5 78 31-108 115-193 (306)
31 KOG0109 RNA-binding protein LA 99.5 1.2E-13 2.5E-18 121.9 6.7 85 32-124 3-88 (346)
32 TIGR01622 SF-CC1 splicing fact 99.4 4E-13 8.6E-18 128.1 10.9 80 28-107 86-165 (457)
33 TIGR01622 SF-CC1 splicing fact 99.4 3.8E-13 8.3E-18 128.2 10.6 78 31-108 186-264 (457)
34 KOG0131 Splicing factor 3b, su 99.4 1.5E-13 3.3E-18 114.0 6.6 99 27-125 5-107 (203)
35 KOG4205 RNA-binding protein mu 99.4 1.1E-13 2.4E-18 125.6 5.9 95 30-124 5-107 (311)
36 KOG0111 Cyclophilin-type pepti 99.4 9.5E-14 2.1E-18 118.3 5.0 82 29-110 8-90 (298)
37 KOG0117 Heterogeneous nuclear 99.4 6.4E-12 1.4E-16 116.4 17.2 80 27-114 255-335 (506)
38 PLN03213 repressor of silencin 99.4 5.1E-13 1.1E-17 124.9 9.3 77 27-107 6-85 (759)
39 PLN03121 nucleic acid binding 99.4 1E-12 2.2E-17 114.3 10.3 74 30-106 4-77 (243)
40 KOG0145 RNA-binding protein EL 99.4 1E-12 2.3E-17 114.5 9.7 98 27-124 37-137 (360)
41 KOG0108 mRNA cleavage and poly 99.4 7.4E-13 1.6E-17 125.0 8.6 81 32-112 19-100 (435)
42 TIGR01648 hnRNP-R-Q heterogene 99.4 3.6E-12 7.8E-17 124.5 13.1 74 29-110 231-307 (578)
43 cd00590 RRM RRM (RNA recogniti 99.4 6.8E-12 1.5E-16 87.7 9.3 71 33-104 1-72 (74)
44 KOG0127 Nucleolar protein fibr 99.4 3.1E-12 6.8E-17 120.9 9.8 88 25-112 286-380 (678)
45 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 8E-12 1.7E-16 120.6 10.7 76 28-108 272-349 (481)
46 KOG0114 Predicted RNA-binding 99.3 1.3E-11 2.9E-16 93.8 8.8 85 19-106 6-91 (124)
47 KOG0146 RNA-binding protein ET 99.3 2.1E-12 4.5E-17 113.0 4.4 85 30-115 18-104 (371)
48 smart00361 RRM_1 RNA recogniti 99.3 1.4E-11 3.1E-16 88.1 7.6 60 45-104 2-69 (70)
49 KOG0105 Alternative splicing f 99.3 1E-11 2.2E-16 103.5 7.1 80 29-111 4-84 (241)
50 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 2.3E-11 4.9E-16 117.4 10.3 72 31-108 2-76 (481)
51 KOG0146 RNA-binding protein ET 99.3 6.4E-12 1.4E-16 109.9 5.7 83 26-108 280-363 (371)
52 KOG4212 RNA-binding protein hn 99.3 1.3E-11 2.9E-16 114.0 7.8 79 30-109 43-123 (608)
53 KOG0147 Transcriptional coacti 99.3 6.8E-12 1.5E-16 118.8 5.9 79 33-111 280-359 (549)
54 KOG0145 RNA-binding protein EL 99.2 4.2E-11 9.1E-16 104.5 10.0 88 22-109 269-357 (360)
55 KOG0124 Polypyrimidine tract-b 99.2 5.3E-12 1.1E-16 114.5 4.3 75 31-105 113-188 (544)
56 KOG0127 Nucleolar protein fibr 99.2 3.2E-11 6.9E-16 114.2 8.6 79 31-110 117-196 (678)
57 KOG0130 RNA-binding protein RB 99.2 5.2E-11 1.1E-15 94.6 7.4 82 27-108 68-150 (170)
58 KOG0131 Splicing factor 3b, su 99.2 4.4E-11 9.5E-16 99.4 5.9 78 32-109 97-176 (203)
59 KOG0123 Polyadenylate-binding 99.2 9.7E-11 2.1E-15 109.3 8.4 76 31-109 76-152 (369)
60 KOG4205 RNA-binding protein mu 99.1 8.4E-11 1.8E-15 106.9 5.5 81 31-111 97-177 (311)
61 KOG4208 Nucleolar RNA-binding 99.1 3.1E-10 6.7E-15 96.1 8.0 86 25-110 43-130 (214)
62 KOG4661 Hsp27-ERE-TATA-binding 99.1 4.7E-10 1E-14 106.8 9.6 79 29-107 403-482 (940)
63 KOG0109 RNA-binding protein LA 99.1 1.8E-10 3.9E-15 101.9 6.3 79 28-114 75-154 (346)
64 PF13893 RRM_5: RNA recognitio 99.1 4.8E-10 1E-14 76.4 6.7 54 48-106 1-55 (56)
65 KOG0124 Polypyrimidine tract-b 99.1 2.8E-10 6.1E-15 103.4 7.1 78 28-105 207-285 (544)
66 KOG0226 RNA-binding proteins [ 99.1 2.1E-10 4.6E-15 99.8 5.7 82 23-104 182-264 (290)
67 KOG0132 RNA polymerase II C-te 99.0 5.8E-10 1.3E-14 109.3 8.1 77 30-112 420-497 (894)
68 KOG0153 Predicted RNA-binding 99.0 7.1E-10 1.5E-14 100.2 7.8 80 24-111 221-302 (377)
69 TIGR01642 U2AF_lg U2 snRNP aux 99.0 1E-09 2.2E-14 106.0 9.0 73 26-105 170-255 (509)
70 KOG0415 Predicted peptidyl pro 99.0 1.2E-09 2.5E-14 99.1 6.5 80 28-107 236-316 (479)
71 KOG4212 RNA-binding protein hn 98.9 2E-09 4.3E-14 99.9 7.8 77 25-106 530-607 (608)
72 KOG0533 RRM motif-containing p 98.9 9.2E-09 2E-13 90.4 8.6 89 27-116 79-168 (243)
73 KOG0116 RasGAP SH3 binding pro 98.8 4.1E-08 8.8E-13 92.6 11.8 81 30-110 287-367 (419)
74 KOG0110 RNA-binding protein (R 98.8 1.9E-08 4E-13 98.1 7.7 81 28-108 512-596 (725)
75 KOG4849 mRNA cleavage factor I 98.8 1.7E-07 3.6E-12 85.1 13.1 76 29-104 78-156 (498)
76 KOG4209 Splicing factor RNPS1, 98.7 2.3E-08 4.9E-13 87.7 7.0 84 26-110 96-180 (231)
77 KOG0123 Polyadenylate-binding 98.7 3.1E-08 6.7E-13 92.6 8.0 84 32-124 2-86 (369)
78 KOG4454 RNA binding protein (R 98.7 6.3E-09 1.4E-13 89.0 2.4 82 29-112 7-89 (267)
79 KOG4206 Spliceosomal protein s 98.7 6.7E-08 1.4E-12 83.0 8.1 77 30-109 8-89 (221)
80 KOG4660 Protein Mei2, essentia 98.6 3.7E-08 8E-13 93.9 4.6 74 25-103 69-143 (549)
81 KOG0110 RNA-binding protein (R 98.6 5.1E-08 1.1E-12 95.1 4.5 80 28-107 610-690 (725)
82 KOG1457 RNA binding protein (c 98.5 1.8E-06 4E-11 74.3 12.6 97 24-120 27-128 (284)
83 KOG1548 Transcription elongati 98.4 7.2E-07 1.6E-11 80.9 8.0 80 27-107 130-218 (382)
84 KOG4211 Splicing factor hnRNP- 98.4 7.4E-07 1.6E-11 84.1 8.0 73 27-102 6-78 (510)
85 KOG0106 Alternative splicing f 98.4 2.5E-07 5.5E-12 79.9 3.8 65 32-104 2-67 (216)
86 KOG1995 Conserved Zn-finger pr 98.3 1.6E-06 3.4E-11 79.1 6.9 90 21-110 56-154 (351)
87 KOG0151 Predicted splicing reg 98.2 3.7E-06 8.1E-11 82.4 7.8 76 26-101 169-248 (877)
88 PF04059 RRM_2: RNA recognitio 98.2 1.1E-05 2.3E-10 61.5 8.1 82 32-113 2-88 (97)
89 KOG0120 Splicing factor U2AF, 98.0 6.4E-06 1.4E-10 79.1 5.3 84 25-108 283-367 (500)
90 KOG4211 Splicing factor hnRNP- 97.9 3.5E-05 7.6E-10 73.0 7.6 73 29-102 101-174 (510)
91 KOG4210 Nuclear localization s 97.9 1.1E-05 2.4E-10 73.0 4.1 75 31-106 184-260 (285)
92 KOG1457 RNA binding protein (c 97.8 1.3E-05 2.8E-10 69.2 3.5 65 26-94 205-269 (284)
93 KOG0147 Transcriptional coacti 97.8 5.8E-06 1.3E-10 79.0 1.3 79 28-106 176-254 (549)
94 KOG0106 Alternative splicing f 97.8 2.1E-05 4.6E-10 68.0 4.3 73 25-105 93-166 (216)
95 PF14605 Nup35_RRM_2: Nup53/35 97.8 6.3E-05 1.4E-09 50.9 5.4 52 32-90 2-53 (53)
96 PF08777 RRM_3: RNA binding mo 97.8 5E-05 1.1E-09 58.7 5.4 57 32-94 2-58 (105)
97 COG5175 MOT2 Transcriptional r 97.6 0.00015 3.3E-09 65.9 6.1 75 31-105 114-198 (480)
98 KOG0105 Alternative splicing f 97.5 0.00083 1.8E-08 56.7 9.6 67 25-98 109-176 (241)
99 KOG0129 Predicted RNA-binding 97.5 0.00025 5.5E-09 67.7 7.2 66 29-94 368-434 (520)
100 KOG0129 Predicted RNA-binding 97.5 0.00035 7.5E-09 66.7 7.8 65 28-93 256-326 (520)
101 KOG1190 Polypyrimidine tract-b 97.4 0.00048 1E-08 64.2 7.5 72 31-107 297-370 (492)
102 KOG2314 Translation initiation 97.4 0.00053 1.1E-08 66.2 7.5 72 28-100 55-133 (698)
103 KOG1855 Predicted RNA-binding 97.3 0.00033 7.2E-09 65.5 4.9 76 25-100 225-313 (484)
104 KOG1190 Polypyrimidine tract-b 97.3 0.00035 7.7E-09 65.0 4.7 53 30-88 27-79 (492)
105 KOG4307 RNA binding protein RB 97.2 0.00094 2E-08 65.9 7.6 79 27-105 863-942 (944)
106 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.0029 6.2E-08 48.5 7.9 72 30-102 5-83 (100)
107 PF11608 Limkain-b1: Limkain b 97.1 0.0014 3.1E-08 48.4 5.7 65 32-106 3-73 (90)
108 KOG4206 Spliceosomal protein s 97.0 0.0019 4.2E-08 55.8 6.2 62 28-94 143-204 (221)
109 KOG2193 IGF-II mRNA-binding pr 97.0 0.00037 7.9E-09 65.2 1.8 86 32-125 2-91 (584)
110 KOG3152 TBP-binding protein, a 96.9 0.00067 1.4E-08 59.7 3.1 71 30-100 73-156 (278)
111 PF10309 DUF2414: Protein of u 96.8 0.0081 1.8E-07 41.9 7.0 57 29-93 3-62 (62)
112 KOG1548 Transcription elongati 96.6 0.0063 1.4E-07 55.8 7.0 81 27-111 261-353 (382)
113 KOG1365 RNA-binding protein Fu 96.6 0.0024 5.3E-08 59.2 4.3 74 31-105 280-357 (508)
114 KOG4676 Splicing factor, argin 96.4 0.0062 1.3E-07 56.7 5.7 82 32-113 8-92 (479)
115 KOG1996 mRNA splicing factor [ 96.3 0.011 2.3E-07 53.3 6.5 60 45-104 300-361 (378)
116 KOG0128 RNA-binding protein SA 96.3 0.00014 3.1E-09 72.8 -5.8 71 30-100 666-736 (881)
117 KOG0128 RNA-binding protein SA 96.3 0.0036 7.8E-08 63.1 3.8 69 31-100 736-805 (881)
118 KOG0120 Splicing factor U2AF, 96.3 0.01 2.2E-07 57.4 6.8 61 46-106 424-488 (500)
119 KOG0115 RNA-binding protein p5 96.3 0.0044 9.6E-08 54.6 3.7 62 32-94 32-93 (275)
120 KOG1365 RNA-binding protein Fu 96.1 0.0079 1.7E-07 55.9 4.8 69 31-100 161-233 (508)
121 KOG2591 c-Mpl binding protein, 96.1 0.13 2.7E-06 50.2 12.9 74 28-108 172-250 (684)
122 KOG1456 Heterogeneous nuclear 96.0 0.039 8.4E-07 51.3 8.5 76 26-106 282-359 (494)
123 KOG4307 RNA binding protein RB 95.9 0.0066 1.4E-07 60.2 3.5 81 24-105 427-509 (944)
124 KOG1456 Heterogeneous nuclear 95.9 0.36 7.8E-06 45.0 14.4 73 30-107 119-194 (494)
125 KOG2202 U2 snRNP splicing fact 95.8 0.0037 8.1E-08 55.1 1.1 59 47-106 84-144 (260)
126 PF08952 DUF1866: Domain of un 95.6 0.043 9.3E-07 44.8 6.4 55 47-109 52-106 (146)
127 KOG0112 Large RNA-binding prot 95.5 0.004 8.7E-08 63.1 0.3 98 26-124 367-465 (975)
128 PF08675 RNA_bind: RNA binding 94.9 0.072 1.6E-06 39.4 5.2 55 32-94 9-63 (87)
129 KOG2068 MOT2 transcription fac 94.5 0.014 3.1E-07 53.3 0.9 73 29-101 75-154 (327)
130 KOG4210 Nuclear localization s 94.5 0.032 7E-07 50.6 3.1 73 29-101 86-159 (285)
131 KOG4285 Mitotic phosphoprotein 93.2 0.31 6.7E-06 44.2 6.9 61 33-100 199-259 (350)
132 KOG0112 Large RNA-binding prot 92.9 0.11 2.4E-06 53.0 4.1 67 28-100 452-519 (975)
133 KOG2416 Acinus (induces apopto 92.9 0.1 2.3E-06 51.1 3.6 71 25-101 438-511 (718)
134 PF15023 DUF4523: Protein of u 90.9 1 2.2E-05 36.8 6.7 75 25-106 80-158 (166)
135 PF07576 BRAP2: BRCA1-associat 90.3 2.9 6.3E-05 32.5 8.7 64 33-98 15-80 (110)
136 KOG2135 Proteins containing th 89.8 0.18 3.9E-06 48.2 1.7 72 31-108 372-444 (526)
137 PF03880 DbpA: DbpA RNA bindin 89.5 1.5 3.2E-05 31.3 6.1 65 33-106 2-73 (74)
138 PF03467 Smg4_UPF3: Smg-4/UPF3 89.4 0.37 8.1E-06 40.6 3.3 72 29-100 5-84 (176)
139 KOG4660 Protein Mei2, essentia 87.5 0.83 1.8E-05 44.5 4.6 89 26-115 356-476 (549)
140 KOG2253 U1 snRNP complex, subu 86.6 0.41 8.9E-06 47.5 2.1 67 28-103 37-104 (668)
141 KOG4483 Uncharacterized conser 84.1 2.5 5.4E-05 39.9 5.8 64 30-100 390-454 (528)
142 PF04847 Calcipressin: Calcipr 80.6 4 8.7E-05 34.6 5.4 55 44-104 8-65 (184)
143 KOG4410 5-formyltetrahydrofola 77.5 7.3 0.00016 35.4 6.2 47 31-83 330-377 (396)
144 KOG0804 Cytoplasmic Zn-finger 77.2 9.1 0.0002 36.8 7.1 67 30-98 73-141 (493)
145 PF11767 SET_assoc: Histone ly 73.9 13 0.00029 26.1 5.7 44 42-94 11-54 (66)
146 KOG4454 RNA binding protein (R 73.7 0.69 1.5E-05 40.3 -1.1 65 26-91 75-143 (267)
147 KOG4574 RNA-binding protein (c 65.2 3.9 8.6E-05 42.0 1.9 56 33-94 300-355 (1007)
148 PF03468 XS: XS domain; Inter 64.8 17 0.00036 28.5 5.0 49 43-94 29-78 (116)
149 COG0724 RNA-binding proteins ( 64.3 11 0.00024 31.6 4.4 66 26-91 220-285 (306)
150 KOG4676 Splicing factor, argin 63.8 1.5 3.2E-05 41.3 -1.2 60 31-94 151-210 (479)
151 KOG2891 Surface glycoprotein [ 57.3 9.6 0.00021 34.5 2.8 73 28-100 146-254 (445)
152 KOG2318 Uncharacterized conser 56.4 49 0.0011 33.0 7.6 73 28-100 171-296 (650)
153 PF10567 Nab6_mRNP_bdg: RNA-re 52.8 25 0.00053 32.1 4.6 58 30-87 14-78 (309)
154 KOG2295 C2H2 Zn-finger protein 45.3 3.9 8.4E-05 40.2 -1.7 71 29-99 229-300 (648)
155 PF15513 DUF4651: Domain of un 43.1 59 0.0013 22.6 4.3 18 46-63 9-26 (62)
156 PF09707 Cas_Cas2CT1978: CRISP 43.0 54 0.0012 24.3 4.4 48 31-81 25-72 (86)
157 PF07292 NID: Nmi/IFP 35 domai 42.3 14 0.00031 27.6 1.2 25 28-52 49-73 (88)
158 PF11411 DNA_ligase_IV: DNA li 38.1 24 0.00053 21.8 1.6 16 41-56 19-34 (36)
159 PF04026 SpoVG: SpoVG; InterP 37.2 69 0.0015 23.6 4.2 26 57-82 2-27 (84)
160 COG5193 LHP1 La protein, small 37.0 13 0.00028 35.2 0.4 64 28-91 171-244 (438)
161 PRK10905 cell division protein 36.1 85 0.0018 29.1 5.4 62 35-97 248-310 (328)
162 PF13046 DUF3906: Protein of u 35.3 44 0.00096 23.4 2.7 34 43-78 30-63 (64)
163 PRK11558 putative ssRNA endonu 34.6 66 0.0014 24.5 3.8 49 31-82 27-75 (97)
164 smart00596 PRE_C2HC PRE_C2HC d 34.6 76 0.0016 22.6 3.9 56 46-104 2-59 (69)
165 KOG4019 Calcineurin-mediated s 33.6 22 0.00049 30.1 1.2 66 29-100 8-79 (193)
166 COG5353 Uncharacterized protei 33.6 2E+02 0.0043 23.7 6.6 54 32-85 88-154 (161)
167 PF08734 GYD: GYD domain; Int 33.2 1.8E+02 0.0039 21.4 6.0 45 45-93 22-67 (91)
168 KOG2236 Uncharacterized conser 33.2 4.7E+02 0.01 25.5 10.8 13 48-60 247-259 (483)
169 PF00398 RrnaAD: Ribosomal RNA 32.8 81 0.0017 27.8 4.8 54 30-100 96-151 (262)
170 KOG4213 RNA-binding protein La 32.8 1E+02 0.0022 26.2 5.0 50 43-93 118-170 (205)
171 PF02714 DUF221: Domain of unk 32.7 51 0.0011 29.8 3.6 19 76-94 1-19 (325)
172 PF14401 RLAN: RimK-like ATPgr 32.4 93 0.002 25.5 4.7 62 28-89 84-146 (153)
173 PF03439 Spt5-NGN: Early trans 31.8 55 0.0012 23.8 3.0 27 71-97 42-68 (84)
174 PF07530 PRE_C2HC: Associated 30.9 1.3E+02 0.0027 21.1 4.6 56 46-104 2-59 (68)
175 PRK14548 50S ribosomal protein 29.8 1.9E+02 0.004 21.3 5.5 57 33-92 22-80 (84)
176 PRK01178 rps24e 30S ribosomal 29.4 1.4E+02 0.0031 22.7 4.9 48 42-91 30-82 (99)
177 PRK11901 hypothetical protein; 28.6 1.7E+02 0.0037 27.1 6.1 57 39-97 250-308 (327)
178 PF08544 GHMP_kinases_C: GHMP 28.4 1.3E+02 0.0028 20.9 4.5 42 46-93 37-79 (85)
179 PF03875 Statherin: Statherin; 27.5 68 0.0015 20.0 2.3 11 151-161 30-40 (42)
180 PRK13259 regulatory protein Sp 26.9 1.2E+02 0.0025 23.0 4.0 26 57-82 2-27 (94)
181 PF08206 OB_RNB: Ribonuclease 26.4 9.2 0.0002 25.9 -1.9 37 72-108 7-44 (58)
182 COG5638 Uncharacterized conser 26.2 85 0.0018 30.1 3.8 40 25-64 140-184 (622)
183 PF05189 RTC_insert: RNA 3'-te 26.1 1.8E+02 0.0038 21.7 5.0 49 33-81 12-65 (103)
184 TIGR01873 cas_CT1978 CRISPR-as 26.0 60 0.0013 24.2 2.3 49 31-82 25-74 (87)
185 PF00403 HMA: Heavy-metal-asso 25.6 2E+02 0.0043 18.8 6.2 55 33-93 1-59 (62)
186 KOG0226 RNA-binding proteins [ 24.6 44 0.00095 30.0 1.5 70 28-98 93-166 (290)
187 TIGR02542 B_forsyth_147 Bacter 24.2 43 0.00093 26.5 1.2 44 40-83 83-129 (145)
188 PF14893 PNMA: PNMA 23.6 30 0.00064 32.2 0.3 25 30-54 17-41 (331)
189 KOG4008 rRNA processing protei 22.5 57 0.0012 28.9 1.8 35 26-60 35-69 (261)
190 COG4010 Uncharacterized protei 22.4 1.6E+02 0.0035 24.2 4.2 47 38-94 118-164 (170)
191 KOG0156 Cytochrome P450 CYP2 s 21.4 1.7E+02 0.0037 28.6 5.1 59 35-102 36-97 (489)
192 PRK08559 nusG transcription an 20.5 2.1E+02 0.0046 23.1 4.8 32 58-94 36-67 (153)
No 1
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.91 E-value=1.2e-23 Score=179.85 Aligned_cols=86 Identities=78% Similarity=1.283 Sum_probs=81.7
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCCCccCCeee
Q 024889 23 NSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRLR 102 (261)
Q Consensus 23 ~~~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n~~i~Gr~~ 102 (261)
+.++.|++.+|||||+|+|++.+|+||++|++||+|+|++|+.|+.|||||||+||+|+|.++|++||++.|..||||..
T Consensus 4 ~~~~~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~a 83 (247)
T KOG0149|consen 4 NNPFGDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKA 83 (247)
T ss_pred CCCCCCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCccccccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred eeeeec
Q 024889 103 PATLFS 108 (261)
Q Consensus 103 ~v~~~~ 108 (261)
.|.|+.
T Consensus 84 NcnlA~ 89 (247)
T KOG0149|consen 84 NCNLAS 89 (247)
T ss_pred ccchhh
Confidence 887754
No 2
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.80 E-value=8.1e-19 Score=143.33 Aligned_cols=83 Identities=36% Similarity=0.686 Sum_probs=76.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATL 106 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~ 106 (261)
....++|||+||+++++|++|+++|++||+|++|+|++|+.|+++||||||+|.++++|++||+.+| .+|+|+.++|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 4456799999999999999999999999999999999999999999999999999999999999998 999999888777
Q ss_pred ecCC
Q 024889 107 FSGS 110 (261)
Q Consensus 107 ~~~~ 110 (261)
...+
T Consensus 111 a~~~ 114 (144)
T PLN03134 111 ANDR 114 (144)
T ss_pred CCcC
Confidence 6543
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.73 E-value=2.8e-17 Score=151.95 Aligned_cols=100 Identities=18% Similarity=0.240 Sum_probs=85.9
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeee
Q 024889 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPA 104 (261)
Q Consensus 26 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v 104 (261)
.++...++|||+||+++++|++|+++|++||+|++|+|++|+.|+++||||||+|.++++|++||+.|+ .+|.++.++|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 455678999999999999999999999999999999999999999999999999999999999999999 8999998777
Q ss_pred eeecCCC--CCCCCCCcCCCCCC
Q 024889 105 TLFSGST--QATRGPYIGSFGYQ 125 (261)
Q Consensus 105 ~~~~~~~--~~~r~~~~~~~~~~ 125 (261)
....... .....+++++++..
T Consensus 182 ~~a~p~~~~~~~~~lfV~nLp~~ 204 (346)
T TIGR01659 182 SYARPGGESIKDTNLYVTNLPRT 204 (346)
T ss_pred ecccccccccccceeEEeCCCCc
Confidence 6543321 23345777777764
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.70 E-value=1e-16 Score=147.49 Aligned_cols=83 Identities=24% Similarity=0.365 Sum_probs=76.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATL 106 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~ 106 (261)
+....+|||+||+++++|++|+++|++||.|.+|+|++|+.|+++||||||+|.+.++|.+||+.|| ..|+||.++|..
T Consensus 266 ~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~ 345 (352)
T TIGR01661 266 DGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSF 345 (352)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3445679999999999999999999999999999999999999999999999999999999999999 899999988887
Q ss_pred ecCC
Q 024889 107 FSGS 110 (261)
Q Consensus 107 ~~~~ 110 (261)
...+
T Consensus 346 ~~~~ 349 (352)
T TIGR01661 346 KTNK 349 (352)
T ss_pred ccCC
Confidence 6654
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.70 E-value=9.3e-17 Score=147.82 Aligned_cols=96 Identities=26% Similarity=0.398 Sum_probs=82.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeeec
Q 024889 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLFS 108 (261)
Q Consensus 30 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~~ 108 (261)
..++|||+|||.+++|++|+++|++||+|.+|+|++|+.+|++||||||+|.+.++|++||+.+| ..|.|+.++++...
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 36899999999999999999999999999999999999999999999999999999999999999 89999988777654
Q ss_pred CCCC--CCCCCCcCCCCCC
Q 024889 109 GSTQ--ATRGPYIGSFGYQ 125 (261)
Q Consensus 109 ~~~~--~~r~~~~~~~~~~ 125 (261)
.... ..+.+++++++..
T Consensus 82 ~~~~~~~~~~l~v~~l~~~ 100 (352)
T TIGR01661 82 PSSDSIKGANLYVSGLPKT 100 (352)
T ss_pred ccccccccceEEECCcccc
Confidence 3322 2345666766654
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.67 E-value=1.4e-15 Score=148.87 Aligned_cols=82 Identities=30% Similarity=0.506 Sum_probs=75.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATL 106 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~ 106 (261)
....++|||+||++++++++|+++|++||.|++|+|++| .++++||||||+|.+.++|++||+++| ..|+||.+.|.+
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~ 360 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVAL 360 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEe
Confidence 445678999999999999999999999999999999999 579999999999999999999999999 899999888877
Q ss_pred ecCC
Q 024889 107 FSGS 110 (261)
Q Consensus 107 ~~~~ 110 (261)
+..+
T Consensus 361 a~~k 364 (562)
T TIGR01628 361 AQRK 364 (562)
T ss_pred ccCc
Confidence 6543
No 7
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.66 E-value=4.8e-16 Score=143.79 Aligned_cols=81 Identities=25% Similarity=0.442 Sum_probs=71.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATL 106 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~ 106 (261)
+...++|||+||+++++|++|+++|++||+|++|+|++|+.++++||||||+|.+.++|++||+.|| ..|+++.+++++
T Consensus 190 ~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V 269 (346)
T TIGR01659 190 SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTV 269 (346)
T ss_pred ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999999 778775444444
Q ss_pred ec
Q 024889 107 FS 108 (261)
Q Consensus 107 ~~ 108 (261)
.+
T Consensus 270 ~~ 271 (346)
T TIGR01659 270 RL 271 (346)
T ss_pred EE
Confidence 33
No 8
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.64 E-value=6.9e-16 Score=108.84 Aligned_cols=68 Identities=37% Similarity=0.666 Sum_probs=64.0
Q ss_pred EEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeee
Q 024889 34 VFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLR 102 (261)
Q Consensus 34 vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~ 102 (261)
|||+|||.++++++|+++|++||.|..+++..+ .+++.+++|||+|.+.++|++||+.++ ..++|+.+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~i 69 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKI 69 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCc
Confidence 799999999999999999999999999999998 569999999999999999999999888 88888854
No 9
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=1.7e-15 Score=132.32 Aligned_cols=73 Identities=36% Similarity=0.535 Sum_probs=67.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATL 106 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~ 106 (261)
..++|+|||||++..++|++||+.|+.||.|.||+|.+| +||+||.|++.|+|.+||..+| .+|.|.+.+|.+
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSW 234 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEec
Confidence 456799999999999999999999999999999999998 6899999999999999999999 999999765544
No 10
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=6.1e-16 Score=142.22 Aligned_cols=104 Identities=26% Similarity=0.443 Sum_probs=84.2
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC--CccC
Q 024889 21 YLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT--PFID 98 (261)
Q Consensus 21 ~~~~~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n--~~i~ 98 (261)
.......|.+.-|+|||-||+.++|+|||++|++||.|.+|.|++||.|+.+||||||+|.++++|.+||..++ +.|-
T Consensus 24 ~~~~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlp 103 (510)
T KOG0144|consen 24 LDHTDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLP 103 (510)
T ss_pred CCCCCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccC
Confidence 33345567788899999999999999999999999999999999999999999999999999999999999988 6777
Q ss_pred Ceeeee--eeecCCCCC---CCCCCcCCCCC
Q 024889 99 GRLRPA--TLFSGSTQA---TRGPYIGSFGY 124 (261)
Q Consensus 99 Gr~~~v--~~~~~~~~~---~r~~~~~~~~~ 124 (261)
|-...| +.+.+...+ .|++|++-+..
T Consensus 104 G~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK 134 (510)
T KOG0144|consen 104 GMHHPVQVKYADGERERIVEERKLFVGMLSK 134 (510)
T ss_pred CCCcceeecccchhhhccccchhhhhhhccc
Confidence 764433 333333222 45667765544
No 11
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.64 E-value=5.6e-16 Score=138.29 Aligned_cols=90 Identities=26% Similarity=0.479 Sum_probs=80.7
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeee
Q 024889 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRP 103 (261)
Q Consensus 25 ~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~ 103 (261)
.......++|+|.|||+...|-||+.+|++||+|++|.|+.+. .-|||||||+|++.++|++|-+++| ..|+||+++
T Consensus 90 s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIE 167 (376)
T KOG0125|consen 90 SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIE 167 (376)
T ss_pred CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEE
Confidence 3456678999999999999999999999999999999999883 6789999999999999999999999 999999999
Q ss_pred eeeecCCCCCCCC
Q 024889 104 ATLFSGSTQATRG 116 (261)
Q Consensus 104 v~~~~~~~~~~r~ 116 (261)
|.....+...+++
T Consensus 168 Vn~ATarV~n~K~ 180 (376)
T KOG0125|consen 168 VNNATARVHNKKK 180 (376)
T ss_pred EeccchhhccCCc
Confidence 9988777655443
No 12
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=1.4e-15 Score=140.42 Aligned_cols=93 Identities=27% Similarity=0.417 Sum_probs=82.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-Ccc-CCeeeeeee
Q 024889 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFI-DGRLRPATL 106 (261)
Q Consensus 29 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i-~Gr~~~v~~ 106 (261)
..-|.||||.||.++.|++|..+|++.|+|-+++||+|+.+|.+||||||+|.+.++|++||+.+| ++| .||.+.|.+
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 456899999999999999999999999999999999999999999999999999999999999999 766 788877776
Q ss_pred ecCCCCCCCCCCcCCCCCC
Q 024889 107 FSGSTQATRGPYIGSFGYQ 125 (261)
Q Consensus 107 ~~~~~~~~r~~~~~~~~~~ 125 (261)
.+. +.++|+++++..
T Consensus 161 Sva----n~RLFiG~IPK~ 175 (506)
T KOG0117|consen 161 SVA----NCRLFIGNIPKT 175 (506)
T ss_pred eee----cceeEeccCCcc
Confidence 543 456788887764
No 13
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.59 E-value=4.4e-15 Score=145.15 Aligned_cols=78 Identities=32% Similarity=0.563 Sum_probs=73.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeee
Q 024889 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATL 106 (261)
Q Consensus 29 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~ 106 (261)
...++|||+||+++++|++|+++|++||.|++|+|++|+.|+++||||||+|.+.++|++||+.+| ..|+||.++|..
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 356899999999999999999999999999999999999999999999999999999999999999 899999877653
No 14
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=8.4e-15 Score=129.40 Aligned_cols=90 Identities=31% Similarity=0.501 Sum_probs=82.2
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeee
Q 024889 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRP 103 (261)
Q Consensus 25 ~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~ 103 (261)
...++.-++|||+.|+.+++|++|++.|++||.|+.|.|++|+.||++||||||+|+++.+...|-+.-. .+|+|+.+.
T Consensus 95 ~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~ 174 (335)
T KOG0113|consen 95 NAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRIL 174 (335)
T ss_pred cccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEE
Confidence 3445677999999999999999999999999999999999999999999999999999999999999988 899999988
Q ss_pred eeeecCCCCCC
Q 024889 104 ATLFSGSTQAT 114 (261)
Q Consensus 104 v~~~~~~~~~~ 114 (261)
|.+..++..+.
T Consensus 175 VDvERgRTvkg 185 (335)
T KOG0113|consen 175 VDVERGRTVKG 185 (335)
T ss_pred EEecccccccc
Confidence 88877766544
No 15
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.58 E-value=8.6e-15 Score=142.72 Aligned_cols=76 Identities=32% Similarity=0.447 Sum_probs=68.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccC-Ceeeeee
Q 024889 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFID-GRLRPAT 105 (261)
Q Consensus 29 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~-Gr~~~v~ 105 (261)
...++|||+|||++++|++|+++|++||.|.+|+|++| .++++||||||+|.+.++|++||+.|| .+|. |+.+.+.
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 35689999999999999999999999999999999999 689999999999999999999999999 6664 6654443
No 16
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.57 E-value=9.4e-15 Score=142.86 Aligned_cols=81 Identities=19% Similarity=0.372 Sum_probs=75.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeee
Q 024889 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLF 107 (261)
Q Consensus 29 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~ 107 (261)
...++|||+||+.++++++|+++|++||+|++|+|++|+.++++||||||+|.+.++|.+||+.|| ..|+|+.++|...
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 355899999999999999999999999999999999999999999999999999999999999999 8999998777655
Q ss_pred cC
Q 024889 108 SG 109 (261)
Q Consensus 108 ~~ 109 (261)
+.
T Consensus 282 i~ 283 (612)
T TIGR01645 282 VT 283 (612)
T ss_pred CC
Confidence 43
No 17
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=2e-14 Score=123.94 Aligned_cols=81 Identities=30% Similarity=0.385 Sum_probs=74.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATL 106 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~ 106 (261)
..+.++|-|.||+.+++|++|+++|.+||.|.+|.|.+|++||.+||||||.|.++++|.+||+.|| +-++.-+++|++
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 3466789999999999999999999999999999999999999999999999999999999999999 788888888776
Q ss_pred ec
Q 024889 107 FS 108 (261)
Q Consensus 107 ~~ 108 (261)
..
T Consensus 266 sk 267 (270)
T KOG0122|consen 266 SK 267 (270)
T ss_pred cC
Confidence 54
No 18
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.56 E-value=1.5e-14 Score=102.84 Aligned_cols=68 Identities=35% Similarity=0.625 Sum_probs=62.7
Q ss_pred EEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeee
Q 024889 34 VFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLR 102 (261)
Q Consensus 34 vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~ 102 (261)
|||+|||+++++++|+++|+.+|.|.++++.++++ ++.+|+|||+|.+.++|++|++.++ ..++|+.+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l 69 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKL 69 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEc
Confidence 79999999999999999999999999999999987 9999999999999999999999999 88999853
No 19
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=8.6e-15 Score=127.88 Aligned_cols=78 Identities=40% Similarity=0.606 Sum_probs=72.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeeec
Q 024889 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLFS 108 (261)
Q Consensus 31 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~~ 108 (261)
..-||||.|..+++.|+||+.|.+||+|.+++|++|..|+++|||+||.|.++++|++||..|| .+|.+|.++..++.
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 4679999999999999999999999999999999999999999999999999999999999999 89999976655544
No 20
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=9.4e-15 Score=114.84 Aligned_cols=84 Identities=21% Similarity=0.281 Sum_probs=78.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATL 106 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~ 106 (261)
..+.++||||||+..++||.|.++|+++|+|+.|.+-.|+.+....|||||+|.+.++|+.|++.++ ..|+.+++++.+
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 3467999999999999999999999999999999999999999999999999999999999999999 999999999888
Q ss_pred ecCCC
Q 024889 107 FSGST 111 (261)
Q Consensus 107 ~~~~~ 111 (261)
..+-.
T Consensus 113 D~GF~ 117 (153)
T KOG0121|consen 113 DAGFV 117 (153)
T ss_pred cccch
Confidence 77643
No 21
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.54 E-value=2.6e-14 Score=140.01 Aligned_cols=75 Identities=29% Similarity=0.481 Sum_probs=70.9
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeee
Q 024889 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLF 107 (261)
Q Consensus 33 ~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~ 107 (261)
+||||||+.+++|++|+++|++||.|++|+|.+|+.|++++|||||+|.+.++|++||+.+| ..|+|+.+++.+.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s 77 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWS 77 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecc
Confidence 79999999999999999999999999999999999999999999999999999999999999 7799998776553
No 22
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.51 E-value=6.9e-14 Score=123.23 Aligned_cols=74 Identities=18% Similarity=0.269 Sum_probs=67.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeeec
Q 024889 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLFS 108 (261)
Q Consensus 31 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~~ 108 (261)
.++|||+||++.++|++|+++|+.||+|++|.|++|+. ++|||||+|.++++|+.||. || ..|+|+.+.|.+..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 57999999999999999999999999999999999853 57999999999999999996 66 99999988877644
No 23
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=1.6e-14 Score=132.95 Aligned_cols=83 Identities=29% Similarity=0.450 Sum_probs=72.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC--CccCCeeeeeeee
Q 024889 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT--PFIDGRLRPATLF 107 (261)
Q Consensus 30 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n--~~i~Gr~~~v~~~ 107 (261)
+.+|||||.|++.++|+|++++|++||.|++|.|++|.+ +.+|||+||+|.++|-|..||+.|| ..++|...+..++
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 468999999999999999999999999999999999986 9999999999999999999999999 6788875554444
Q ss_pred cCCCCC
Q 024889 108 SGSTQA 113 (261)
Q Consensus 108 ~~~~~~ 113 (261)
+...++
T Consensus 202 FADtqk 207 (510)
T KOG0144|consen 202 FADTQK 207 (510)
T ss_pred ecccCC
Confidence 444333
No 24
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=7.7e-14 Score=115.05 Aligned_cols=79 Identities=27% Similarity=0.420 Sum_probs=72.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeeec
Q 024889 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLFS 108 (261)
Q Consensus 30 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~~ 108 (261)
-.++||||||+..+++.||..+|.+||.|..|.|-+++ .|||||+|+|..+|++|+..|+ ..|+|..+.|++..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 47999999999999999999999999999999887664 6899999999999999999999 99999989999988
Q ss_pred CCCCC
Q 024889 109 GSTQA 113 (261)
Q Consensus 109 ~~~~~ 113 (261)
+....
T Consensus 84 G~~r~ 88 (195)
T KOG0107|consen 84 GRPRG 88 (195)
T ss_pred CCccc
Confidence 76543
No 25
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.48 E-value=2.5e-13 Score=131.16 Aligned_cols=81 Identities=21% Similarity=0.361 Sum_probs=74.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATL 106 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~ 106 (261)
....++|||+||++.+++++|+++|+.||.|+.+.|++++.+|+++|||||+|.+.++|++||+.|| ..|+|+.+.|..
T Consensus 292 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~ 371 (509)
T TIGR01642 292 LDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQR 371 (509)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3456899999999999999999999999999999999999999999999999999999999999999 889999877766
Q ss_pred ec
Q 024889 107 FS 108 (261)
Q Consensus 107 ~~ 108 (261)
..
T Consensus 372 a~ 373 (509)
T TIGR01642 372 AC 373 (509)
T ss_pred Cc
Confidence 54
No 26
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=5.5e-15 Score=122.51 Aligned_cols=78 Identities=28% Similarity=0.505 Sum_probs=73.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeee
Q 024889 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATL 106 (261)
Q Consensus 29 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~ 106 (261)
....-|||||||++.||.||..+|++||+|++|.|++|+.||+||||||++|+|..+-.-|+..+| ..|.||.++|.-
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 345689999999999999999999999999999999999999999999999999999999999999 899999877764
No 27
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.47 E-value=6.8e-14 Score=118.16 Aligned_cols=81 Identities=26% Similarity=0.462 Sum_probs=74.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
+-+..+.|-|-||...++.++|+.+|++||.|-+|.|.+|+.|+.++||+||.|.+..+|++|++.|+ .+|+|+-+.|.
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 34456789999999999999999999999999999999999999999999999999999999999999 89999977665
Q ss_pred ee
Q 024889 106 LF 107 (261)
Q Consensus 106 ~~ 107 (261)
++
T Consensus 89 ~a 90 (256)
T KOG4207|consen 89 MA 90 (256)
T ss_pred hh
Confidence 53
No 28
>smart00362 RRM_2 RNA recognition motif.
Probab=99.46 E-value=3.6e-13 Score=93.69 Aligned_cols=70 Identities=31% Similarity=0.553 Sum_probs=64.2
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeee
Q 024889 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPA 104 (261)
Q Consensus 33 ~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v 104 (261)
+|||+||+.++++++|+++|++||.|.++++..++ +.++|++||+|.+.++|++|++.++ ..++|+.+.+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999999886 7889999999999999999999999 8888876443
No 29
>smart00360 RRM RNA recognition motif.
Probab=99.46 E-value=3.7e-13 Score=93.24 Aligned_cols=69 Identities=36% Similarity=0.607 Sum_probs=63.6
Q ss_pred EcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeee
Q 024889 36 VGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPA 104 (261)
Q Consensus 36 VgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v 104 (261)
|+||++++++++|+++|++||.|.++++..++.+++++|+|||+|.+.++|++|++.++ ..++|+.+.+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 67999999999999999999999999999998889999999999999999999999999 7888875443
No 30
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.45 E-value=3e-13 Score=116.71 Aligned_cols=78 Identities=28% Similarity=0.590 Sum_probs=74.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeeec
Q 024889 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLFS 108 (261)
Q Consensus 31 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~~ 108 (261)
.++|||+||++++++++|+++|.+||.|..+.+..|+.+++++|||||+|.+.++|.+||+.++ ..|.|+.+.|....
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 6999999999999999999999999999999999999899999999999999999999999999 99999988887754
No 31
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.45 E-value=1.2e-13 Score=121.92 Aligned_cols=85 Identities=26% Similarity=0.460 Sum_probs=76.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeeecCC
Q 024889 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLFSGS 110 (261)
Q Consensus 32 ~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~~~~ 110 (261)
.+|||||||.++++.+|+.+|++||+|+||.|+++ ||||..+|+..++.||.+|+ .+|+|..++|+..+.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 58999999999999999999999999999999988 99999999999999999999 8999999999887776
Q ss_pred CCCCCCCCcCCCCC
Q 024889 111 TQATRGPYIGSFGY 124 (261)
Q Consensus 111 ~~~~r~~~~~~~~~ 124 (261)
....-+++++|+..
T Consensus 75 sk~stkl~vgNis~ 88 (346)
T KOG0109|consen 75 SKASTKLHVGNISP 88 (346)
T ss_pred CCCccccccCCCCc
Confidence 55555677776653
No 32
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.45 E-value=4e-13 Score=128.14 Aligned_cols=80 Identities=26% Similarity=0.385 Sum_probs=72.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCCCccCCeeeeeeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRLRPATLF 107 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n~~i~Gr~~~v~~~ 107 (261)
+...++|||+||+.++++++|+++|++||.|.+|+|++|+.++++||||||+|.+.++|++||...+..|.|+.+.+...
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSS 165 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeec
Confidence 44578999999999999999999999999999999999999999999999999999999999985448899987766543
No 33
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.45 E-value=3.8e-13 Score=128.24 Aligned_cols=78 Identities=32% Similarity=0.583 Sum_probs=73.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeeec
Q 024889 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLFS 108 (261)
Q Consensus 31 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~~ 108 (261)
.++|||+||+..++|++|+++|++||.|++|+|++|+.+|+++|||||+|.+.++|++||+.|| ..|.|+.+.|....
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 6899999999999999999999999999999999999999999999999999999999999999 89999988877654
No 34
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.44 E-value=1.5e-13 Score=113.97 Aligned_cols=99 Identities=22% Similarity=0.321 Sum_probs=85.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
+.....+||||||+..++|+.|.++|-+.|.|.++++.+|+.+...+|||||+|.++|+|+-||+-|| .+|-||+++|.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 34456899999999999999999999999999999999999999999999999999999999999999 89999998887
Q ss_pred eecC---CCCCCCCCCcCCCCCC
Q 024889 106 LFSG---STQATRGPYIGSFGYQ 125 (261)
Q Consensus 106 ~~~~---~~~~~r~~~~~~~~~~ 125 (261)
.... ......+.|++++...
T Consensus 85 kas~~~~nl~vganlfvgNLd~~ 107 (203)
T KOG0131|consen 85 KASAHQKNLDVGANLFVGNLDPE 107 (203)
T ss_pred ecccccccccccccccccccCcc
Confidence 7652 2222345677777653
No 35
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.44 E-value=1.1e-13 Score=125.63 Aligned_cols=95 Identities=39% Similarity=0.716 Sum_probs=83.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCCCccCCeeeeeeeecC
Q 024889 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRLRPATLFSG 109 (261)
Q Consensus 30 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n~~i~Gr~~~v~~~~~ 109 (261)
+.++||||+|+|+++||.|++.|.+||+|.+|++++|+.++++|||+||+|.+.+...++|....+.|+||.+..+.++.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 77999999999999999999999999999999999999999999999999999999999999988999999877776665
Q ss_pred CCCC--------CCCCCcCCCCC
Q 024889 110 STQA--------TRGPYIGSFGY 124 (261)
Q Consensus 110 ~~~~--------~r~~~~~~~~~ 124 (261)
+... .+++++++++.
T Consensus 85 r~~~~~~~~~~~tkkiFvGG~~~ 107 (311)
T KOG4205|consen 85 REDQTKVGRHLRTKKIFVGGLPP 107 (311)
T ss_pred cccccccccccceeEEEecCcCC
Confidence 5421 23566666654
No 36
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=9.5e-14 Score=118.30 Aligned_cols=82 Identities=28% Similarity=0.440 Sum_probs=76.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeee
Q 024889 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLF 107 (261)
Q Consensus 29 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~ 107 (261)
...++||||+|..+++|.-|...|-.||+|++|+++.|-+++++|||+||+|...|+|..||..|| .+|.||.++|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 345899999999999999999999999999999999999999999999999999999999999999 9999999888876
Q ss_pred cCC
Q 024889 108 SGS 110 (261)
Q Consensus 108 ~~~ 110 (261)
...
T Consensus 88 kP~ 90 (298)
T KOG0111|consen 88 KPE 90 (298)
T ss_pred CCc
Confidence 543
No 37
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=6.4e-12 Score=116.39 Aligned_cols=80 Identities=26% Similarity=0.376 Sum_probs=72.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
...+++.|||.||+.++|||.|+++|++||+|++|+.++| ||||+|.++++|.+|++++| ++|+|..+.|.
T Consensus 255 ~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvt 326 (506)
T KOG0117|consen 255 TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVT 326 (506)
T ss_pred hhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEE
Confidence 4567799999999999999999999999999999999887 99999999999999999999 99999999999
Q ss_pred eecCCCCCC
Q 024889 106 LFSGSTQAT 114 (261)
Q Consensus 106 ~~~~~~~~~ 114 (261)
|++....++
T Consensus 327 LAKP~~k~k 335 (506)
T KOG0117|consen 327 LAKPVDKKK 335 (506)
T ss_pred ecCChhhhc
Confidence 987654433
No 38
>PLN03213 repressor of silencing 3; Provisional
Probab=99.42 E-value=5.1e-13 Score=124.95 Aligned_cols=77 Identities=12% Similarity=0.245 Sum_probs=68.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCH--HHHHHHHhcCC-CccCCeeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP--EAARRACADPT-PFIDGRLRP 103 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~--~~A~~Ai~~~n-~~i~Gr~~~ 103 (261)
......+||||||.+++++++|+.+|..||.|.+|.|++ +|| ||||||+|.+. +++.+||..|| .++.||.++
T Consensus 6 s~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LK 81 (759)
T PLN03213 6 SGGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLR 81 (759)
T ss_pred cCCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeE
Confidence 445568999999999999999999999999999999994 467 99999999977 78999999999 889999776
Q ss_pred eeee
Q 024889 104 ATLF 107 (261)
Q Consensus 104 v~~~ 107 (261)
|..+
T Consensus 82 VNKA 85 (759)
T PLN03213 82 LEKA 85 (759)
T ss_pred Eeec
Confidence 6543
No 39
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.42 E-value=1e-12 Score=114.31 Aligned_cols=74 Identities=19% Similarity=0.157 Sum_probs=65.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCCCccCCeeeeeee
Q 024889 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRLRPATL 106 (261)
Q Consensus 30 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n~~i~Gr~~~v~~ 106 (261)
...+|||+||++.++|++|+++|+.||+|.+|+|++| ++.++||||+|+++++++.||...+..|.++.+.+..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~ 77 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITR 77 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEe
Confidence 3479999999999999999999999999999999998 4567899999999999999996555888888766554
No 40
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=1e-12 Score=114.45 Aligned_cols=98 Identities=24% Similarity=0.392 Sum_probs=83.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
.++..++|.|--||..+|+||||.+|...|+|++|++++|+.+|.+.||+||.|.++++|++||..+| ..|..|.++|+
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 36667899999999999999999999999999999999999999999999999999999999999999 88998988887
Q ss_pred eecCCCCCC--CCCCcCCCCC
Q 024889 106 LFSGSTQAT--RGPYIGSFGY 124 (261)
Q Consensus 106 ~~~~~~~~~--r~~~~~~~~~ 124 (261)
.+......- ..+++.+++.
T Consensus 117 yARPSs~~Ik~aNLYvSGlPk 137 (360)
T KOG0145|consen 117 YARPSSDSIKDANLYVSGLPK 137 (360)
T ss_pred eccCChhhhcccceEEecCCc
Confidence 665443322 3345555544
No 41
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.40 E-value=7.4e-13 Score=125.04 Aligned_cols=81 Identities=30% Similarity=0.544 Sum_probs=77.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeeecCC
Q 024889 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLFSGS 110 (261)
Q Consensus 32 ~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~~~~ 110 (261)
+.||||||+++++||+|.++|+..|.|.+++++.|++||++|||+|++|.+.+++++|++.+| .++.||.++|.....+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 899999999999999999999999999999999999999999999999999999999999999 9999999888877665
Q ss_pred CC
Q 024889 111 TQ 112 (261)
Q Consensus 111 ~~ 112 (261)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 44
No 42
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.39 E-value=3.6e-12 Score=124.50 Aligned_cols=74 Identities=24% Similarity=0.366 Sum_probs=66.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcC--CCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 29 TTYTKVFVGGLAWETQSETMRRYFEQF--GEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 29 ~~~~~vfVgnLp~~~te~~L~~~F~~~--G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
.+.++|||+||+++++|++|+++|++| |+|++|++++ +||||+|.+.++|++||+.|| .+|+|+.++|+
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~ 302 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVT 302 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 346789999999999999999999999 9999998764 499999999999999999999 99999998888
Q ss_pred eecCC
Q 024889 106 LFSGS 110 (261)
Q Consensus 106 ~~~~~ 110 (261)
+....
T Consensus 303 ~Akp~ 307 (578)
T TIGR01648 303 LAKPV 307 (578)
T ss_pred EccCC
Confidence 77553
No 43
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.35 E-value=6.8e-12 Score=87.65 Aligned_cols=71 Identities=32% Similarity=0.592 Sum_probs=64.3
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeee
Q 024889 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPA 104 (261)
Q Consensus 33 ~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v 104 (261)
+|+|+||+..+++++|+++|+.+|.|.++.+..++.+ +.+|++||+|.+.++|..|++.++ ..++|+.+.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v 72 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRV 72 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 4899999999999999999999999999999988764 779999999999999999999999 6688886554
No 44
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=3.1e-12 Score=120.88 Aligned_cols=88 Identities=34% Similarity=0.522 Sum_probs=79.7
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcC----C---Ccc
Q 024889 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP----T---PFI 97 (261)
Q Consensus 25 ~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~----n---~~i 97 (261)
.++....++|||.||+++++|++|.++|++||+|..+.|+.++.|++++|.|||.|.+..+|..||+.- . ..|
T Consensus 286 ~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll 365 (678)
T KOG0127|consen 286 RENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLL 365 (678)
T ss_pred cccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEE
Confidence 566667799999999999999999999999999999999999999999999999999999999999876 2 468
Q ss_pred CCeeeeeeeecCCCC
Q 024889 98 DGRLRPATLFSGSTQ 112 (261)
Q Consensus 98 ~Gr~~~v~~~~~~~~ 112 (261)
+||.++|.+++.+..
T Consensus 366 ~GR~Lkv~~Av~Rke 380 (678)
T KOG0127|consen 366 DGRLLKVTLAVTRKE 380 (678)
T ss_pred eccEEeeeeccchHH
Confidence 999999888877643
No 45
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.32 E-value=8e-12 Score=120.57 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=68.6
Q ss_pred CCCCcEEEEcCCCC-CCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 28 DTTYTKVFVGGLAW-ETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 28 ~~~~~~vfVgnLp~-~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
....++|||+||++ .+++++|+++|++||.|++|+|++++ ||||||+|.+.++|++||+.|| ..|+|+.++|.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 44668999999998 69999999999999999999999873 6899999999999999999999 89999988877
Q ss_pred eec
Q 024889 106 LFS 108 (261)
Q Consensus 106 ~~~ 108 (261)
...
T Consensus 347 ~s~ 349 (481)
T TIGR01649 347 PSK 349 (481)
T ss_pred Ecc
Confidence 643
No 46
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=1.3e-11 Score=93.82 Aligned_cols=85 Identities=19% Similarity=0.313 Sum_probs=72.6
Q ss_pred CCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-Ccc
Q 024889 19 FQYLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFI 97 (261)
Q Consensus 19 ~~~~~~~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i 97 (261)
....+.....+.++-|||.|||+++|.|++.++|.+||.|..|+|-.. ...+|-|||.|++..+|++||.+|+ ..+
T Consensus 6 ~~~~~~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~---k~TrGTAFVVYedi~dAk~A~dhlsg~n~ 82 (124)
T KOG0114|consen 6 KKKQNIRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT---KETRGTAFVVYEDIFDAKKACDHLSGYNV 82 (124)
T ss_pred cccCCCCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCc---cCcCceEEEEehHhhhHHHHHHHhccccc
Confidence 334455566777889999999999999999999999999999999665 4458999999999999999999999 889
Q ss_pred CCeeeeeee
Q 024889 98 DGRLRPATL 106 (261)
Q Consensus 98 ~Gr~~~v~~ 106 (261)
+++.+.|-.
T Consensus 83 ~~ryl~vly 91 (124)
T KOG0114|consen 83 DNRYLVVLY 91 (124)
T ss_pred CCceEEEEe
Confidence 999665543
No 47
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=2.1e-12 Score=112.98 Aligned_cols=85 Identities=29% Similarity=0.436 Sum_probs=71.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC--CccCCeeeeeeee
Q 024889 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT--PFIDGRLRPATLF 107 (261)
Q Consensus 30 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n--~~i~Gr~~~v~~~ 107 (261)
+++|||||.|.+.-.|||+|++|..||.|++|.+++..+ |.+|||+||+|.+..||..||..++ ..+-|......++
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 678999999999999999999999999999999999986 9999999999999999999999998 5677764333333
Q ss_pred cCCCCCCC
Q 024889 108 SGSTQATR 115 (261)
Q Consensus 108 ~~~~~~~r 115 (261)
.....+.|
T Consensus 97 ~ADTdkER 104 (371)
T KOG0146|consen 97 FADTDKER 104 (371)
T ss_pred eccchHHH
Confidence 33333443
No 48
>smart00361 RRM_1 RNA recognition motif.
Probab=99.28 E-value=1.4e-11 Score=88.14 Aligned_cols=60 Identities=32% Similarity=0.501 Sum_probs=53.6
Q ss_pred HHHHHHHHh----cCCCEEEEE-EeecCCC--CCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeee
Q 024889 45 SETMRRYFE----QFGEILEAV-VITDKNT--GRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPA 104 (261)
Q Consensus 45 e~~L~~~F~----~~G~I~~v~-v~~d~~t--g~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v 104 (261)
+++|+++|+ +||.|.++. |+.++.+ +++|||+||+|.+.++|.+||+.|| ..++||.+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678899998 999999995 7777766 9999999999999999999999999 8999997554
No 49
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=1e-11 Score=103.53 Aligned_cols=80 Identities=20% Similarity=0.327 Sum_probs=69.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeee
Q 024889 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLF 107 (261)
Q Consensus 29 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~ 107 (261)
...++|||||||.++.|.+|.++|.+||.|.+|.|..- -....||||+|++..+|+.||...+ ..++|..++|++.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 34689999999999999999999999999999988432 3346799999999999999999999 9999999898887
Q ss_pred cCCC
Q 024889 108 SGST 111 (261)
Q Consensus 108 ~~~~ 111 (261)
.+..
T Consensus 81 rggr 84 (241)
T KOG0105|consen 81 RGGR 84 (241)
T ss_pred cCCC
Confidence 6653
No 50
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.26 E-value=2.3e-11 Score=117.41 Aligned_cols=72 Identities=17% Similarity=0.219 Sum_probs=64.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcC--C-CccCCeeeeeeee
Q 024889 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP--T-PFIDGRLRPATLF 107 (261)
Q Consensus 31 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~--n-~~i~Gr~~~v~~~ 107 (261)
.+.|||+||+++++|++|+++|++||.|++|+|+++ |+||||+|.+.++|++||+.+ + ..|+|+.+.|.+.
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 478999999999999999999999999999999865 579999999999999999864 5 7899998877765
Q ss_pred c
Q 024889 108 S 108 (261)
Q Consensus 108 ~ 108 (261)
.
T Consensus 76 ~ 76 (481)
T TIGR01649 76 T 76 (481)
T ss_pred C
Confidence 3
No 51
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=6.4e-12 Score=109.93 Aligned_cols=83 Identities=27% Similarity=0.329 Sum_probs=76.3
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeee
Q 024889 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPA 104 (261)
Q Consensus 26 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v 104 (261)
.+..+.|+|||=.||.+..|.||..+|-.||.|.+.||+.|+.|+.||+|+||.|++..++..||..|| ..|+-|.++|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 456677999999999999999999999999999999999999999999999999999999999999999 7888887776
Q ss_pred eeec
Q 024889 105 TLFS 108 (261)
Q Consensus 105 ~~~~ 108 (261)
.++.
T Consensus 360 QLKR 363 (371)
T KOG0146|consen 360 QLKR 363 (371)
T ss_pred hhcC
Confidence 6644
No 52
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.25 E-value=1.3e-11 Score=114.04 Aligned_cols=79 Identities=19% Similarity=0.380 Sum_probs=72.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHH-hcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeee
Q 024889 30 TYTKVFVGGLAWETQSETMRRYF-EQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLF 107 (261)
Q Consensus 30 ~~~~vfVgnLp~~~te~~L~~~F-~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~ 107 (261)
..+.|||.|||+++.+.+|+++| ++-|+|+.|.|+.|. +|++|||+.|+|+++|.++||++.|| ++++||.+.|+..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 44669999999999999999999 688999999999997 49999999999999999999999999 9999998887765
Q ss_pred cC
Q 024889 108 SG 109 (261)
Q Consensus 108 ~~ 109 (261)
..
T Consensus 122 ~d 123 (608)
T KOG4212|consen 122 HD 123 (608)
T ss_pred Cc
Confidence 54
No 53
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.25 E-value=6.8e-12 Score=118.75 Aligned_cols=79 Identities=34% Similarity=0.624 Sum_probs=74.0
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeeecCCC
Q 024889 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLFSGST 111 (261)
Q Consensus 33 ~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~~~~~ 111 (261)
+||||||.++++|++|+.+|+.||+|..|.+++|.+||++|||+||+|.+.++|++|++.+| .+|-|+.++|.+...+.
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 39999999999999999999999999999999999899999999999999999999999999 89999998887765543
No 54
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=4.2e-11 Score=104.54 Aligned_cols=88 Identities=26% Similarity=0.355 Sum_probs=80.3
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCe
Q 024889 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGR 100 (261)
Q Consensus 22 ~~~~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr 100 (261)
.+-+..+....+|||=||..+.+|.-|..+|..||.|..|+|++|..|.++|||+||...+-+||..||..+| ..+.+|
T Consensus 269 ~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~r 348 (360)
T KOG0145|consen 269 VNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR 348 (360)
T ss_pred eccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccce
Confidence 3446667778899999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred eeeeeeecC
Q 024889 101 LRPATLFSG 109 (261)
Q Consensus 101 ~~~v~~~~~ 109 (261)
.+.|..+..
T Consensus 349 vLQVsFKtn 357 (360)
T KOG0145|consen 349 VLQVSFKTN 357 (360)
T ss_pred EEEEEEecC
Confidence 888776543
No 55
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=5.3e-12 Score=114.51 Aligned_cols=75 Identities=33% Similarity=0.595 Sum_probs=71.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 31 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
-|+||||.|.+++.||.||..|..||.|+++.+..|+.|+++|||+||+|+-+|.|.-|++.|| ..++||.++|.
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg 188 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 188 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCcccccc
Confidence 4899999999999999999999999999999999999999999999999999999999999999 89999976554
No 56
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=3.2e-11 Score=114.17 Aligned_cols=79 Identities=24% Similarity=0.440 Sum_probs=73.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeeecC
Q 024889 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLFSG 109 (261)
Q Consensus 31 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~~~ 109 (261)
..+|+|.||||.|.+.+|+.+|+.||.|.+|.|++.++ |+.+|||||.|.+..+|.+||+.+| ++|+||.+-|.+++.
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 67999999999999999999999999999999998887 6666999999999999999999999 999999988887765
Q ss_pred C
Q 024889 110 S 110 (261)
Q Consensus 110 ~ 110 (261)
.
T Consensus 196 K 196 (678)
T KOG0127|consen 196 K 196 (678)
T ss_pred c
Confidence 3
No 57
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.19 E-value=5.2e-11 Score=94.65 Aligned_cols=82 Identities=23% Similarity=0.300 Sum_probs=75.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
-..+-.-|||.++..+.+|++|.+.|..||+|+.+.|..|+.||-.|||+.|+|.+.++|.+||..+| ..|-|..+.|.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999999 88888877776
Q ss_pred eec
Q 024889 106 LFS 108 (261)
Q Consensus 106 ~~~ 108 (261)
+..
T Consensus 148 w~F 150 (170)
T KOG0130|consen 148 WCF 150 (170)
T ss_pred EEE
Confidence 643
No 58
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.16 E-value=4.4e-11 Score=99.42 Aligned_cols=78 Identities=24% Similarity=0.459 Sum_probs=71.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEEE-EEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeeecC
Q 024889 32 TKVFVGGLAWETQSETMRRYFEQFGEILE-AVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLFSG 109 (261)
Q Consensus 32 ~~vfVgnLp~~~te~~L~~~F~~~G~I~~-v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~~~ 109 (261)
.+|||+||+++++|..|.+.|+.||.|.. -++++|.+||.++||+||.|.+.+.+.+||+.|| ..++.+.+.|.....
T Consensus 97 anlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k 176 (203)
T KOG0131|consen 97 ANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFK 176 (203)
T ss_pred ccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEe
Confidence 79999999999999999999999999766 4899999999999999999999999999999999 788888888777654
No 59
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=9.7e-11 Score=109.32 Aligned_cols=76 Identities=34% Similarity=0.564 Sum_probs=67.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeeecC
Q 024889 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLFSG 109 (261)
Q Consensus 31 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~~~ 109 (261)
.+.|||.||+.+++.++|.++|+.||+|++|+|.+|.+ | +||| ||+|.++++|++||+.+| ..+.++.+-|.+...
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 34499999999999999999999999999999999975 5 9999 999999999999999999 778888765555443
No 60
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.10 E-value=8.4e-11 Score=106.86 Aligned_cols=81 Identities=32% Similarity=0.586 Sum_probs=75.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCCCccCCeeeeeeeecCC
Q 024889 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRLRPATLFSGS 110 (261)
Q Consensus 31 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n~~i~Gr~~~v~~~~~~ 110 (261)
.++||||+|+.+++|++|++.|++||.|.++.++.|..+.+.|||+||.|.+++++++++...-+.|+++.+.|+.++.+
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~pk 176 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIPK 176 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccch
Confidence 56999999999999999999999999999999999999999999999999999999999988779999998888776654
Q ss_pred C
Q 024889 111 T 111 (261)
Q Consensus 111 ~ 111 (261)
.
T Consensus 177 ~ 177 (311)
T KOG4205|consen 177 E 177 (311)
T ss_pred h
Confidence 3
No 61
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.09 E-value=3.1e-10 Score=96.07 Aligned_cols=86 Identities=24% Similarity=0.347 Sum_probs=75.5
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcC-CCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeee
Q 024889 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQF-GEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLR 102 (261)
Q Consensus 25 ~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~-G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~ 102 (261)
........-++|..++..+.|.++..+|.+| |.++.+++-|++.||.|||||||+|++++.|+.|.+.|| ..+.++++
T Consensus 43 ~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL 122 (214)
T KOG4208|consen 43 KPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLL 122 (214)
T ss_pred CCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhhee
Confidence 3445566788999999999999999999988 788888998999999999999999999999999999999 88889987
Q ss_pred eeeeecCC
Q 024889 103 PATLFSGS 110 (261)
Q Consensus 103 ~v~~~~~~ 110 (261)
.|......
T Consensus 123 ~c~vmppe 130 (214)
T KOG4208|consen 123 ECHVMPPE 130 (214)
T ss_pred eeEEeCch
Confidence 77765443
No 62
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.08 E-value=4.7e-10 Score=106.81 Aligned_cols=79 Identities=23% Similarity=0.434 Sum_probs=72.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeee
Q 024889 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLF 107 (261)
Q Consensus 29 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~ 107 (261)
...++|||.+|...+...+|+.+|++||+|+-++|+++..+--.+||+||+..+.++|.+||+.|+ .+|.||+|.|+..
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 345789999999999999999999999999999999997777789999999999999999999999 9999998777654
No 63
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.08 E-value=1.8e-10 Score=101.93 Aligned_cols=79 Identities=24% Similarity=0.420 Sum_probs=72.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATL 106 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~ 106 (261)
.+..+||+||||.+.++.+|||+.|++||.+.+|+|++| |+||.|.-.++|..||+.|+ .+++|+.+.|.+
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 446789999999999999999999999999999999988 99999999999999999999 999999999998
Q ss_pred ecCCCCCC
Q 024889 107 FSGSTQAT 114 (261)
Q Consensus 107 ~~~~~~~~ 114 (261)
...+.+.+
T Consensus 147 stsrlrta 154 (346)
T KOG0109|consen 147 STSRLRTA 154 (346)
T ss_pred eccccccC
Confidence 88776554
No 64
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.07 E-value=4.8e-10 Score=76.40 Aligned_cols=54 Identities=26% Similarity=0.525 Sum_probs=47.6
Q ss_pred HHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeee
Q 024889 48 MRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATL 106 (261)
Q Consensus 48 L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~ 106 (261)
|+++|++||+|.++++..++ ++++||+|.+.++|++|++.+| ..++|+.++|..
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSY 55 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 68999999999999997763 6899999999999999999999 889999877764
No 65
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.06 E-value=2.8e-10 Score=103.43 Aligned_cols=78 Identities=19% Similarity=0.407 Sum_probs=72.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
.....+|||..+..+.+|+||+.+|+.||+|+.|++-+++.++.+|||+|++|.+..+...||..|| ..|+|..++|-
T Consensus 207 Ak~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVG 285 (544)
T KOG0124|consen 207 AKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVG 285 (544)
T ss_pred HHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecc
Confidence 4556899999999999999999999999999999999999889999999999999999999999999 89999975443
No 66
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.06 E-value=2.1e-10 Score=99.80 Aligned_cols=82 Identities=34% Similarity=0.552 Sum_probs=75.1
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCee
Q 024889 23 NSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRL 101 (261)
Q Consensus 23 ~~~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~ 101 (261)
+-.+.++.+.+||+|.|..+++++.|-+.|.+|-.-...++++|+.||++|||+||.|.+..++.+|+.+|+ ..++.|+
T Consensus 182 sl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrp 261 (290)
T KOG0226|consen 182 SLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRP 261 (290)
T ss_pred ccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccch
Confidence 334567788999999999999999999999999999999999999999999999999999999999999999 8889886
Q ss_pred eee
Q 024889 102 RPA 104 (261)
Q Consensus 102 ~~v 104 (261)
++.
T Consensus 262 ikl 264 (290)
T KOG0226|consen 262 IKL 264 (290)
T ss_pred hHh
Confidence 554
No 67
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.03 E-value=5.8e-10 Score=109.28 Aligned_cols=77 Identities=19% Similarity=0.379 Sum_probs=68.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeeec
Q 024889 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLFS 108 (261)
Q Consensus 30 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~~ 108 (261)
-.++||||+|+..++|.||+.+|+.||+|.+|+++.. +|||||+...+.+|++|+.+|+ +.+.++.+++.+.+
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 3489999999999999999999999999999999766 6799999999999999999999 88999987777766
Q ss_pred CCCC
Q 024889 109 GSTQ 112 (261)
Q Consensus 109 ~~~~ 112 (261)
+...
T Consensus 494 g~G~ 497 (894)
T KOG0132|consen 494 GKGP 497 (894)
T ss_pred cCCc
Confidence 6443
No 68
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.02 E-value=7.1e-10 Score=100.17 Aligned_cols=80 Identities=33% Similarity=0.482 Sum_probs=68.4
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC--CccCCee
Q 024889 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT--PFIDGRL 101 (261)
Q Consensus 24 ~~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n--~~i~Gr~ 101 (261)
.|-+|...++|||++|-..++|.+|+++|.+||+|+.++++.. ++||||+|.++++|++|.++.- ..|+|+.
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~R 294 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFR 294 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceE
Confidence 4667889999999999999999999999999999999999876 4599999999999999987654 6788886
Q ss_pred eeeeeecCCC
Q 024889 102 RPATLFSGST 111 (261)
Q Consensus 102 ~~v~~~~~~~ 111 (261)
+.+. |++.
T Consensus 295 l~i~--Wg~~ 302 (377)
T KOG0153|consen 295 LKIK--WGRP 302 (377)
T ss_pred EEEE--eCCC
Confidence 5544 6654
No 69
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.01 E-value=1e-09 Score=106.03 Aligned_cols=73 Identities=19% Similarity=0.324 Sum_probs=58.3
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcC------------CCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcC
Q 024889 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQF------------GEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP 93 (261)
Q Consensus 26 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~------------G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~ 93 (261)
..+...++||||||++++++++|+++|+.+ +.|..+.+ ++.+|||||+|.+.++|++||+ |
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l 242 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-L 242 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-C
Confidence 446667899999999999999999999875 23333333 4558999999999999999995 7
Q ss_pred C-CccCCeeeeee
Q 024889 94 T-PFIDGRLRPAT 105 (261)
Q Consensus 94 n-~~i~Gr~~~v~ 105 (261)
+ ..|.|+.+++.
T Consensus 243 ~g~~~~g~~l~v~ 255 (509)
T TIGR01642 243 DSIIYSNVFLKIR 255 (509)
T ss_pred CCeEeeCceeEec
Confidence 7 78888765553
No 70
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.2e-09 Score=99.08 Aligned_cols=80 Identities=29% Similarity=0.413 Sum_probs=72.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATL 106 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~ 106 (261)
......|||-.|.+.+++++|.-+|+.||.|..|.|++|+.||.+..|+||+|.+.+++++|.-.|. ..|+.+.+-|..
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 3445789999999999999999999999999999999999999999999999999999999999888 888988766654
Q ss_pred e
Q 024889 107 F 107 (261)
Q Consensus 107 ~ 107 (261)
.
T Consensus 316 S 316 (479)
T KOG0415|consen 316 S 316 (479)
T ss_pred h
Confidence 3
No 71
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.95 E-value=2e-09 Score=99.86 Aligned_cols=77 Identities=30% Similarity=0.471 Sum_probs=69.6
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeee
Q 024889 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRP 103 (261)
Q Consensus 25 ~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~ 103 (261)
.....+.|+|||.|||.++|+..||+-|..||.|+.+.|+.. |++|| .|.|.++++|++||..|+ ..|+||.++
T Consensus 530 ~gaarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~---GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~ 604 (608)
T KOG4212|consen 530 VGAARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMEN---GKSKG--VVRFFSPEDAERACALMNGSRLDGRNIK 604 (608)
T ss_pred ccccccccEEEEecCCccccHHHHHHHHHhccceehhhhhcc---CCccc--eEEecCHHHHHHHHHHhccCcccCceee
Confidence 445667899999999999999999999999999999999654 88888 899999999999999999 899999888
Q ss_pred eee
Q 024889 104 ATL 106 (261)
Q Consensus 104 v~~ 106 (261)
|..
T Consensus 605 V~y 607 (608)
T KOG4212|consen 605 VTY 607 (608)
T ss_pred eee
Confidence 764
No 72
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.86 E-value=9.2e-09 Score=90.42 Aligned_cols=89 Identities=30% Similarity=0.431 Sum_probs=78.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
.+...++|+|.||+..+++++|+++|+.||.++.+.|-.|+. |++.|.|-|.|...++|++|++.+| ..++|+.+++.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-GRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-CCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 556668999999999999999999999999999998888874 9999999999999999999999999 89999988887
Q ss_pred eecCCCCCCCC
Q 024889 106 LFSGSTQATRG 116 (261)
Q Consensus 106 ~~~~~~~~~r~ 116 (261)
+........+.
T Consensus 158 ~i~~~~~~~r~ 168 (243)
T KOG0533|consen 158 IISSPSQSKRL 168 (243)
T ss_pred EecCccccccc
Confidence 76665544433
No 73
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.81 E-value=4.1e-08 Score=92.65 Aligned_cols=81 Identities=23% Similarity=0.322 Sum_probs=67.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCCCccCCeeeeeeeecC
Q 024889 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRLRPATLFSG 109 (261)
Q Consensus 30 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n~~i~Gr~~~v~~~~~ 109 (261)
....|||+|||.++++++|+++|++||.|++..|..-.-.++..+||||+|.+.++++.||+.--..|+++.+.|+.+..
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 34559999999999999999999999999998876543235556999999999999999999876888988777766554
Q ss_pred C
Q 024889 110 S 110 (261)
Q Consensus 110 ~ 110 (261)
.
T Consensus 367 ~ 367 (419)
T KOG0116|consen 367 G 367 (419)
T ss_pred c
Confidence 3
No 74
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.76 E-value=1.9e-08 Score=98.13 Aligned_cols=81 Identities=30% Similarity=0.491 Sum_probs=70.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCC---CcceEEEEEEcCHHHHHHHHhcCC-CccCCeeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTG---RSKGYGFVTFREPEAARRACADPT-PFIDGRLRP 103 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg---~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~ 103 (261)
....++|||.||+++++.++|..+|.+.|.|+.+.|.+.++.. .|.|||||+|.+.++|++|++.|+ +.|+|..+.
T Consensus 512 ~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~ 591 (725)
T KOG0110|consen 512 EETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLE 591 (725)
T ss_pred cccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEE
Confidence 3444559999999999999999999999999999887665422 255999999999999999999999 999999888
Q ss_pred eeeec
Q 024889 104 ATLFS 108 (261)
Q Consensus 104 v~~~~ 108 (261)
+++..
T Consensus 592 lk~S~ 596 (725)
T KOG0110|consen 592 LKISE 596 (725)
T ss_pred EEecc
Confidence 87766
No 75
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.75 E-value=1.7e-07 Score=85.13 Aligned_cols=76 Identities=18% Similarity=0.370 Sum_probs=66.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCC--CEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeee
Q 024889 29 TTYTKVFVGGLAWETQSETMRRYFEQFG--EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPA 104 (261)
Q Consensus 29 ~~~~~vfVgnLp~~~te~~L~~~F~~~G--~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v 104 (261)
...-.+|||||-|++|++||.+.+...| .|.++|++.++.+|.+|||+.|...++.+.++.++.+. .+|.|..-.|
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 3446789999999999999999887665 68889999999999999999999999999999999998 8899984333
No 76
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.74 E-value=2.3e-08 Score=87.75 Aligned_cols=84 Identities=25% Similarity=0.311 Sum_probs=76.6
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeee
Q 024889 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPA 104 (261)
Q Consensus 26 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v 104 (261)
..+.+.+.|||+|++..++.+++..+|+.||.|..+.|..|+.++.+|||+||+|.+.+.+++++. |+ ..|.|+.+.+
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 457788999999999999999999999999999999999999999999999999999999999999 77 8999998777
Q ss_pred eeecCC
Q 024889 105 TLFSGS 110 (261)
Q Consensus 105 ~~~~~~ 110 (261)
..+..+
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 765544
No 77
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=3.1e-08 Score=92.62 Aligned_cols=84 Identities=23% Similarity=0.358 Sum_probs=69.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeeecCC
Q 024889 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLFSGS 110 (261)
Q Consensus 32 ~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~~~~ 110 (261)
..|||| .+++|++|.++|+.+|.++.++|-+|. | +-|||||.|.+.++|++||.++| ..|.|+.+++.+....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468999 999999999999999999999999998 6 99999999999999999999999 8899997665543332
Q ss_pred CCCCCCCCcCCCCC
Q 024889 111 TQATRGPYIGSFGY 124 (261)
Q Consensus 111 ~~~~r~~~~~~~~~ 124 (261)
.. . .++.++..
T Consensus 76 ~~--~-~~i~nl~~ 86 (369)
T KOG0123|consen 76 PS--L-VFIKNLDE 86 (369)
T ss_pred Cc--e-eeecCCCc
Confidence 21 1 45555544
No 78
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.70 E-value=6.3e-09 Score=88.98 Aligned_cols=82 Identities=15% Similarity=0.210 Sum_probs=73.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeee
Q 024889 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLF 107 (261)
Q Consensus 29 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~ 107 (261)
+..++|||+||-..++|+.|.++|-+-|.|.+|+|..+++ ++.| |+||+|+++.++.-|++.+| ..+.++.+.++++
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 4568999999999999999999999999999999999886 6667 99999999999999999999 8899998888887
Q ss_pred cCCCC
Q 024889 108 SGSTQ 112 (261)
Q Consensus 108 ~~~~~ 112 (261)
.+...
T Consensus 85 ~G~sh 89 (267)
T KOG4454|consen 85 CGNSH 89 (267)
T ss_pred cCCCc
Confidence 77643
No 79
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.69 E-value=6.7e-08 Score=83.04 Aligned_cols=77 Identities=25% Similarity=0.389 Sum_probs=66.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHH----HHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeee
Q 024889 30 TYTKVFVGGLAWETQSETMRR----YFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPA 104 (261)
Q Consensus 30 ~~~~vfVgnLp~~~te~~L~~----~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v 104 (261)
.+.+|||.||++.+..++|++ +|++||+|.+|...+ |.+.||-|||.|.+.+.|..|+..|+ .-+-||.+++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 344999999999999999998 999999999998866 47899999999999999999999999 6778886655
Q ss_pred eeecC
Q 024889 105 TLFSG 109 (261)
Q Consensus 105 ~~~~~ 109 (261)
..+..
T Consensus 85 qyA~s 89 (221)
T KOG4206|consen 85 QYAKS 89 (221)
T ss_pred ecccC
Confidence 44433
No 80
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.60 E-value=3.7e-08 Score=93.88 Aligned_cols=74 Identities=27% Similarity=0.297 Sum_probs=64.9
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeee
Q 024889 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRP 103 (261)
Q Consensus 25 ~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~ 103 (261)
++.+...++|+|-|||..|++++|+++|+.||+|++|+. |-..+|.+||+|.|..+|++|++++| .+|-|+.++
T Consensus 69 ~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 69 SEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 444777899999999999999999999999999999655 34457999999999999999999999 888888544
No 81
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.57 E-value=5.1e-08 Score=95.15 Aligned_cols=80 Identities=24% Similarity=0.432 Sum_probs=69.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATL 106 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~ 106 (261)
+...++|+|.|||+..+..+++++|..||.|+.|+|++....+.++|||||+|-+.++|.+|+..+. +-|-||.+..++
T Consensus 610 kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEw 689 (725)
T KOG0110|consen 610 KKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEW 689 (725)
T ss_pred ccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheeh
Confidence 3447899999999999999999999999999999999875567789999999999999999999998 777788655444
Q ss_pred e
Q 024889 107 F 107 (261)
Q Consensus 107 ~ 107 (261)
+
T Consensus 690 A 690 (725)
T KOG0110|consen 690 A 690 (725)
T ss_pred h
Confidence 3
No 82
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.53 E-value=1.8e-06 Score=74.31 Aligned_cols=97 Identities=20% Similarity=0.178 Sum_probs=71.0
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEe-ecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCe-
Q 024889 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVI-TDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGR- 100 (261)
Q Consensus 24 ~~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~-~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr- 100 (261)
...+...+++|||.+||.++.-.+|..+|..|-.-+.+.|. +++.....|-++||+|.+..+|.+|++.+| ..+|=.
T Consensus 27 ~~~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~ 106 (284)
T KOG1457|consen 27 LADEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPET 106 (284)
T ss_pred ccccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeecccc
Confidence 34556679999999999999999999999988554444442 334334466899999999999999999999 666544
Q ss_pred --eeeeeeecCCCCCCCCCCcC
Q 024889 101 --LRPATLFSGSTQATRGPYIG 120 (261)
Q Consensus 101 --~~~v~~~~~~~~~~r~~~~~ 120 (261)
.+.+++++.....+|....+
T Consensus 107 ~stLhiElAKSNtK~kr~k~sg 128 (284)
T KOG1457|consen 107 GSTLHIELAKSNTKRKRRKGSG 128 (284)
T ss_pred CceeEeeehhcCcccccCCCCC
Confidence 45566666555444444333
No 83
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.43 E-value=7.2e-07 Score=80.93 Aligned_cols=80 Identities=18% Similarity=0.251 Sum_probs=71.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEE--------EEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-Ccc
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE--------AVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFI 97 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~--------v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i 97 (261)
+...++.|||.|||.++|.+++.++|+++|-|.+ |+|-++.. |..||=+.++|..+++++-||+.|+ ..+
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccc
Confidence 4566788999999999999999999999998754 88888875 9999999999999999999999999 889
Q ss_pred CCeeeeeeee
Q 024889 98 DGRLRPATLF 107 (261)
Q Consensus 98 ~Gr~~~v~~~ 107 (261)
.|+.++|..+
T Consensus 209 rg~~~rVerA 218 (382)
T KOG1548|consen 209 RGKKLRVERA 218 (382)
T ss_pred cCcEEEEehh
Confidence 9997776643
No 84
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.42 E-value=7.4e-07 Score=84.06 Aligned_cols=73 Identities=21% Similarity=0.353 Sum_probs=60.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCCCccCCeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRLR 102 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n~~i~Gr~~ 102 (261)
+..+..-|-+.+|||++|++||+++|+-+ .|+.+++.+. +|+..|-|||+|.+++++++||++....+..|-+
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYI 78 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRR--NGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYI 78 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEecc--CCCcCcceEEEeechHHHHHHHHhhHHHhCCceE
Confidence 34455677888999999999999999987 6788666655 7999999999999999999999986555666633
No 85
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.39 E-value=2.5e-07 Score=79.87 Aligned_cols=65 Identities=28% Similarity=0.593 Sum_probs=57.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeee
Q 024889 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPA 104 (261)
Q Consensus 32 ~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v 104 (261)
.+||||+|++.+.+++|.++|..||.|.+|.+.. ||+||+|.|..+|..||..+| .+|++....+
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vv 67 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVV 67 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeee
Confidence 4799999999999999999999999999997743 599999999999999999999 7788876333
No 86
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.29 E-value=1.6e-06 Score=79.09 Aligned_cols=90 Identities=24% Similarity=0.231 Sum_probs=77.5
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEE--------EEEeecCCCCCcceEEEEEEcCHHHHHHHHhc
Q 024889 21 YLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE--------AVVITDKNTGRSKGYGFVTFREPEAARRACAD 92 (261)
Q Consensus 21 ~~~~~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~--------v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~ 92 (261)
.+++......+.+|||-+|+..+++++|.++|.++|.|+. |+|-+|++|++.||-|.|.|.|...|+.||+.
T Consensus 56 ~~~~~~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~ 135 (351)
T KOG1995|consen 56 DASSMADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEW 135 (351)
T ss_pred CcCccccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhh
Confidence 3445566778899999999999999999999999998864 66778999999999999999999999999999
Q ss_pred CC-CccCCeeeeeeeecCC
Q 024889 93 PT-PFIDGRLRPATLFSGS 110 (261)
Q Consensus 93 ~n-~~i~Gr~~~v~~~~~~ 110 (261)
++ ..+.+..++|.++..+
T Consensus 136 ~agkdf~gn~ikvs~a~~r 154 (351)
T KOG1995|consen 136 FAGKDFCGNTIKVSLAERR 154 (351)
T ss_pred hccccccCCCchhhhhhhc
Confidence 99 8888877776665443
No 87
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.21 E-value=3.7e-06 Score=82.38 Aligned_cols=76 Identities=24% Similarity=0.371 Sum_probs=65.2
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecC---CCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCee
Q 024889 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDK---NTGRSKGYGFVTFREPEAARRACADPT-PFIDGRL 101 (261)
Q Consensus 26 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~---~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~ 101 (261)
.+|...++|||+||+..++|+.|...|..||.|..++|+.-+ +..+-+-|+||.|-++.+|++|++.|+ ..|....
T Consensus 169 dgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e 248 (877)
T KOG0151|consen 169 DGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYE 248 (877)
T ss_pred CCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeee
Confidence 347788999999999999999999999999999999998654 334556799999999999999999998 5666553
No 88
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.18 E-value=1.1e-05 Score=61.54 Aligned_cols=82 Identities=18% Similarity=0.174 Sum_probs=65.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhc--CCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCe--eeeeee
Q 024889 32 TKVFVGGLAWETQSETMRRYFEQ--FGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGR--LRPATL 106 (261)
Q Consensus 32 ~~vfVgnLp~~~te~~L~~~F~~--~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr--~~~v~~ 106 (261)
++|-|.|||...+.++|.+++.. .|+...+-++.|-.++.+.|||||.|.+.+.|.+-.+..+ ...... .+.+++
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999999954 3778888999998889999999999999999999988877 444321 234445
Q ss_pred ecCCCCC
Q 024889 107 FSGSTQA 113 (261)
Q Consensus 107 ~~~~~~~ 113 (261)
..++.|.
T Consensus 82 ~yAriQG 88 (97)
T PF04059_consen 82 SYARIQG 88 (97)
T ss_pred ehhHhhC
Confidence 4544443
No 89
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.03 E-value=6.4e-06 Score=79.07 Aligned_cols=84 Identities=21% Similarity=0.363 Sum_probs=74.3
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeee
Q 024889 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRP 103 (261)
Q Consensus 25 ~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~ 103 (261)
+.......++||++|+..+++++++++.+.||.++...++.|..+|-+|||+|.+|.+......||+.+| ..+.++.+.
T Consensus 283 t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lv 362 (500)
T KOG0120|consen 283 TDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLV 362 (500)
T ss_pred cCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeE
Confidence 4455667899999999999999999999999999999999999999999999999999999999999999 677777655
Q ss_pred eeeec
Q 024889 104 ATLFS 108 (261)
Q Consensus 104 v~~~~ 108 (261)
|..+.
T Consensus 363 vq~A~ 367 (500)
T KOG0120|consen 363 VQRAI 367 (500)
T ss_pred eehhh
Confidence 54443
No 90
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.90 E-value=3.5e-05 Score=72.96 Aligned_cols=73 Identities=23% Similarity=0.341 Sum_probs=59.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEE-EEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCCCccCCeee
Q 024889 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILE-AVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRLR 102 (261)
Q Consensus 29 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~-v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n~~i~Gr~~ 102 (261)
.....|-+.+||+.|+|+||.++|+-.--+.. +.++.|+ .+++.|-|||.|++.+.|++||......|.-|-+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYI 174 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGRHRENIGHRYI 174 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHHHHHhhccceE
Confidence 45567888999999999999999987744444 4455665 4889999999999999999999886667776643
No 91
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.89 E-value=1.1e-05 Score=73.02 Aligned_cols=75 Identities=28% Similarity=0.449 Sum_probs=66.8
Q ss_pred CcEEE-EcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeee
Q 024889 31 YTKVF-VGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATL 106 (261)
Q Consensus 31 ~~~vf-VgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~ 106 (261)
..++| |++|+..+++++|+++|..+|.|+.+++..++.++.++||++|+|.+......++.. . ..+.++.+.+.-
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 34555 999999999999999999999999999999999999999999999999999999998 6 788888655443
No 92
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.85 E-value=1.3e-05 Score=69.17 Aligned_cols=65 Identities=14% Similarity=0.221 Sum_probs=52.2
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC
Q 024889 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT 94 (261)
Q Consensus 26 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n 94 (261)
.......+|||.||..+|+||+|+.+|+.|-....++|- . ...-..+||+|++.+.|+.|+..+.
T Consensus 205 ~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~-~---~~g~~vaf~~~~~~~~at~am~~lq 269 (284)
T KOG1457|consen 205 SGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIR-A---RGGMPVAFADFEEIEQATDAMNHLQ 269 (284)
T ss_pred ccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEe-c---CCCcceEeecHHHHHHHHHHHHHhh
Confidence 344567899999999999999999999999776655552 2 1223589999999999999998876
No 93
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.83 E-value=5.8e-06 Score=79.01 Aligned_cols=79 Identities=24% Similarity=0.348 Sum_probs=69.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCCCccCCeeeeeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRLRPATL 106 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n~~i~Gr~~~v~~ 106 (261)
+...++||+--|...+++-+|.++|+.+|+|.+|.++.|+.++++||.++|+|.|.+..-.||...+..+.|..+.|.+
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQL 254 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecc
Confidence 4456788888899999999999999999999999999999999999999999999999999998766777777655544
No 94
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.81 E-value=2.1e-05 Score=68.03 Aligned_cols=73 Identities=22% Similarity=0.301 Sum_probs=62.8
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeee
Q 024889 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRP 103 (261)
Q Consensus 25 ~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~ 103 (261)
.....+.+.++|-+|..++.+.+|.++|..+|.+....+. ++++||+|+..+++++||..++ ..+.++.+.
T Consensus 93 ~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~--------~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~ 164 (216)
T KOG0106|consen 93 RPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR--------RNFAFVEFSEQEDAKRALEKLDGKKLNGRRIS 164 (216)
T ss_pred CCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh--------ccccceeehhhhhhhhcchhccchhhcCceee
Confidence 3446678999999999999999999999999999665552 4599999999999999999999 889998766
Q ss_pred ee
Q 024889 104 AT 105 (261)
Q Consensus 104 v~ 105 (261)
+.
T Consensus 165 ~~ 166 (216)
T KOG0106|consen 165 VE 166 (216)
T ss_pred ec
Confidence 63
No 95
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.78 E-value=6.3e-05 Score=50.93 Aligned_cols=52 Identities=23% Similarity=0.411 Sum_probs=41.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHH
Q 024889 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC 90 (261)
Q Consensus 32 ~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai 90 (261)
+.|-|.+.+.+.. ++++++|..||+|+++.+..+. -+.+|+|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~~------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPEST------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCCC------cEEEEEECCHHHHHhhC
Confidence 4677888887766 4455699999999999886333 39999999999999986
No 96
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.77 E-value=5e-05 Score=58.72 Aligned_cols=57 Identities=30% Similarity=0.446 Sum_probs=38.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC
Q 024889 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT 94 (261)
Q Consensus 32 ~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n 94 (261)
+-|.|.++...++.++|+++|+.||.|..|.+.+... -|+|.|.+.+.|++|++.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHH
Confidence 4578888999999999999999999999999877643 89999999999999998765
No 97
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.56 E-value=0.00015 Score=65.95 Aligned_cols=75 Identities=28% Similarity=0.484 Sum_probs=57.6
Q ss_pred CcEEEEcCCCCCCcHHH----H--HHHHhcCCCEEEEEEeecCCC-CCcceEE--EEEEcCHHHHHHHHhcCC-CccCCe
Q 024889 31 YTKVFVGGLAWETQSET----M--RRYFEQFGEILEAVVITDKNT-GRSKGYG--FVTFREPEAARRACADPT-PFIDGR 100 (261)
Q Consensus 31 ~~~vfVgnLp~~~te~~----L--~~~F~~~G~I~~v~v~~d~~t-g~skG~g--FV~F~~~~~A~~Ai~~~n-~~i~Gr 100 (261)
..-|||-+|+..+.+|+ | .++|.+||+|.+|.|-+...+ ....+.+ +|+|.+.|+|.+||.+.+ ..+|||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 35689999999887776 2 678999999999988654211 1122333 899999999999999999 889999
Q ss_pred eeeee
Q 024889 101 LRPAT 105 (261)
Q Consensus 101 ~~~v~ 105 (261)
.++..
T Consensus 194 ~lkat 198 (480)
T COG5175 194 VLKAT 198 (480)
T ss_pred eEeee
Confidence 65543
No 98
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.53 E-value=0.00083 Score=56.65 Aligned_cols=67 Identities=21% Similarity=0.250 Sum_probs=58.6
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccC
Q 024889 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFID 98 (261)
Q Consensus 25 ~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~ 98 (261)
+.......+|.|.+||.+.++.+|+++..+-|+|+...+.+| |.+.|+|...|+.+-||..+. .++.
T Consensus 109 ppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 109 PPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred CcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 444556679999999999999999999999999999999888 489999999999999999887 4443
No 99
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.52 E-value=0.00025 Score=67.65 Aligned_cols=66 Identities=32% Similarity=0.388 Sum_probs=60.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHh-cCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC
Q 024889 29 TTYTKVFVGGLAWETQSETMRRYFE-QFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT 94 (261)
Q Consensus 29 ~~~~~vfVgnLp~~~te~~L~~~F~-~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n 94 (261)
+..++||||+||.-++.++|-.+|+ -||.|+-+-|-+|++-+-.||-|=|+|.+..+-.+||...-
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarF 434 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARF 434 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhhe
Confidence 4568999999999999999999998 79999999999997778999999999999999999998654
No 100
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.00035 Score=66.73 Aligned_cols=65 Identities=28% Similarity=0.490 Sum_probs=49.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCC-C--CCcce---EEEEEEcCHHHHHHHHhcC
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKN-T--GRSKG---YGFVTFREPEAARRACADP 93 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~-t--g~skG---~gFV~F~~~~~A~~Ai~~~ 93 (261)
..-.++||||+|||+++|+.|.+.|..||.+. |.+....+ . --.|| |.|+.|+++.++.+-|.+.
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 33458999999999999999999999999854 55553211 1 12467 9999999999887766554
No 101
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.41 E-value=0.00048 Score=64.17 Aligned_cols=72 Identities=17% Similarity=0.258 Sum_probs=63.8
Q ss_pred CcEEEEcCCCCC-CcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeee
Q 024889 31 YTKVFVGGLAWE-TQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLF 107 (261)
Q Consensus 31 ~~~vfVgnLp~~-~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~ 107 (261)
++.|.|.||..+ +|.+.|..+|..||+|.+|+|+.++ |--|.|.+.|...|.-|++.++ +++.||++++.+.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~S 370 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLS 370 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeec
Confidence 678899999665 8999999999999999999999875 2489999999999999999999 9999988777653
No 102
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.38 E-value=0.00053 Score=66.18 Aligned_cols=72 Identities=22% Similarity=0.352 Sum_probs=59.0
Q ss_pred CCCCcEEEEcCCCCCCcH------HHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCe
Q 024889 28 DTTYTKVFVGGLAWETQS------ETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGR 100 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te------~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr 100 (261)
+.-...|+|.|+|---.. .-|.++|+++|+|+.+.++-+.+ |.++||.|++|.+..+|+.|++.+| +.|+..
T Consensus 55 eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 55 EGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred CCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 344577888888764332 34577899999999999998877 5599999999999999999999998 777765
No 103
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.28 E-value=0.00033 Score=65.50 Aligned_cols=76 Identities=21% Similarity=0.260 Sum_probs=61.8
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeec---CCC--CC--------cceEEEEEEcCHHHHHHHHh
Q 024889 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITD---KNT--GR--------SKGYGFVTFREPEAARRACA 91 (261)
Q Consensus 25 ~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d---~~t--g~--------skG~gFV~F~~~~~A~~Ai~ 91 (261)
..++-..++|.+-|||.+-.-+.|.++|..+|.|+.|+|..- ++. +. .|-|+||+|...+.|.+|.+
T Consensus 225 ~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 225 DEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred cccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 444557889999999999999999999999999999998764 222 11 25689999999999999999
Q ss_pred cCCCccCCe
Q 024889 92 DPTPFIDGR 100 (261)
Q Consensus 92 ~~n~~i~Gr 100 (261)
.+|.+-++|
T Consensus 305 ~~~~e~~wr 313 (484)
T KOG1855|consen 305 LLNPEQNWR 313 (484)
T ss_pred hhchhhhhh
Confidence 998555554
No 104
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.26 E-value=0.00035 Score=65.02 Aligned_cols=53 Identities=23% Similarity=0.405 Sum_probs=48.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHH
Q 024889 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88 (261)
Q Consensus 30 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~ 88 (261)
..+.|.++||||+++|+||.+++..||+|+.+++++.++ -+|++|.|+++|..
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvt 79 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVT 79 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhh
Confidence 567899999999999999999999999999999987654 89999999999877
No 105
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.23 E-value=0.00094 Score=65.88 Aligned_cols=79 Identities=19% Similarity=0.293 Sum_probs=63.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
.....+.|-|.|+|++++-|||.++|.-|-.+-.-.+++-.+.|+..|-|-|.|++.++|.+|...++ ..|..|.+.+.
T Consensus 863 ~~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 863 KSPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred CCCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 34555688899999999999999999998655444444434559999999999999999999999998 77877754443
No 106
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.13 E-value=0.0029 Score=48.52 Aligned_cols=72 Identities=28% Similarity=0.356 Sum_probs=47.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEE-EeecC------CCCCcceEEEEEEcCHHHHHHHHhcCCCccCCeee
Q 024889 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAV-VITDK------NTGRSKGYGFVTFREPEAARRACADPTPFIDGRLR 102 (261)
Q Consensus 30 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~-v~~d~------~tg~skG~gFV~F~~~~~A~~Ai~~~n~~i~Gr~~ 102 (261)
..+-|.|=+.|.. ....+.++|++||+|++.. +.++. ..-.....-.|+|.++.+|.+||.+....|+|..+
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 3456777788888 5577888999999998875 11110 00112348899999999999999987777877643
No 107
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.11 E-value=0.0014 Score=48.44 Aligned_cols=65 Identities=20% Similarity=0.312 Sum_probs=42.8
Q ss_pred cEEEEcCCCCCCcHHH----HHHHHhcCC-CEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 32 TKVFVGGLAWETQSET----MRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 32 ~~vfVgnLp~~~te~~----L~~~F~~~G-~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
+-|+|.|||.+.+-.. |+.+++.+| +|.+| +.+-|+|.|.+.+.|.+|.+.|+ ..+.|+.+.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 5799999999988754 566676775 55554 13589999999999999999999 67777765554
Q ss_pred e
Q 024889 106 L 106 (261)
Q Consensus 106 ~ 106 (261)
.
T Consensus 73 ~ 73 (90)
T PF11608_consen 73 F 73 (90)
T ss_dssp S
T ss_pred E
Confidence 3
No 108
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=96.97 E-value=0.0019 Score=55.83 Aligned_cols=62 Identities=26% Similarity=0.359 Sum_probs=54.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT 94 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n 94 (261)
......+|+.|||.+++.+.|..+|++|...++++++..+ ++.+||+|.++..+..|...+.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq 204 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQ 204 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhc
Confidence 3456789999999999999999999999999999998764 5799999999999888888766
No 109
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.96 E-value=0.00037 Score=65.22 Aligned_cols=86 Identities=17% Similarity=0.246 Sum_probs=68.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcC--CCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC--CccCCeeeeeeee
Q 024889 32 TKVFVGGLAWETQSETMRRYFEQF--GEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT--PFIDGRLRPATLF 107 (261)
Q Consensus 32 ~~vfVgnLp~~~te~~L~~~F~~~--G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n--~~i~Gr~~~v~~~ 107 (261)
.++|+|||.+.++.++|+.+|... +--.+ .++ ..||+||.+.|...|.+|++.++ .++.|+...+.-.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~-fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~s 73 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQ-FLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHS 73 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcc-eee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccch
Confidence 479999999999999999999643 11111 111 24799999999999999999999 6789998888888
Q ss_pred cCCCCCCCCCCcCCCCCC
Q 024889 108 SGSTQATRGPYIGSFGYQ 125 (261)
Q Consensus 108 ~~~~~~~r~~~~~~~~~~ 125 (261)
+...++.|+....+++.+
T Consensus 74 v~kkqrsrk~Qirnippq 91 (584)
T KOG2193|consen 74 VPKKQRSRKIQIRNIPPQ 91 (584)
T ss_pred hhHHHHhhhhhHhcCCHH
Confidence 877777788777777664
No 110
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.93 E-value=0.00067 Score=59.70 Aligned_cols=71 Identities=18% Similarity=0.310 Sum_probs=60.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCC--------CCcceE----EEEEEcCHHHHHHHHhcCC-Cc
Q 024889 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNT--------GRSKGY----GFVTFREPEAARRACADPT-PF 96 (261)
Q Consensus 30 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~t--------g~skG~----gFV~F~~~~~A~~Ai~~~n-~~ 96 (261)
....||+++||+.++-..||++|+.||.|-.|.|-...++ |.++.. |.|+|.+...|+++.+.|| .-
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5578999999999999999999999999999988766544 344433 4599999999999999999 78
Q ss_pred cCCe
Q 024889 97 IDGR 100 (261)
Q Consensus 97 i~Gr 100 (261)
|.|+
T Consensus 153 Iggk 156 (278)
T KOG3152|consen 153 IGGK 156 (278)
T ss_pred cCCC
Confidence 8888
No 111
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.78 E-value=0.0081 Score=41.93 Aligned_cols=57 Identities=21% Similarity=0.314 Sum_probs=46.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcC---CCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcC
Q 024889 29 TTYTKVFVGGLAWETQSETMRRYFEQF---GEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP 93 (261)
Q Consensus 29 ~~~~~vfVgnLp~~~te~~L~~~F~~~---G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~ 93 (261)
....+|+|.+++. ++.++++.+|..| .....|.|+-|. -|-|.|.+.+.|.+||..|
T Consensus 3 ~rpeavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 3 IRPEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceeceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 3457899999854 7778999999888 245688999885 5789999999999999864
No 112
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.62 E-value=0.0063 Score=55.78 Aligned_cols=81 Identities=25% Similarity=0.420 Sum_probs=62.5
Q ss_pred CCCCCcEEEEcCC----CCCCc-------HHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-
Q 024889 27 GDTTYTKVFVGGL----AWETQ-------SETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT- 94 (261)
Q Consensus 27 ~~~~~~~vfVgnL----p~~~t-------e~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n- 94 (261)
-....++|.+.|| ..+.+ +++|++-.++||.|.+|+|.-. ...|.+-|.|.+.++|..||+.|+
T Consensus 261 k~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~G 336 (382)
T KOG1548|consen 261 KARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDG 336 (382)
T ss_pred cccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcC
Confidence 3455688888887 11222 3567777899999999987532 347899999999999999999999
Q ss_pred CccCCeeeeeeeecCCC
Q 024889 95 PFIDGRLRPATLFSGST 111 (261)
Q Consensus 95 ~~i~Gr~~~v~~~~~~~ 111 (261)
..++||.+...+.-+..
T Consensus 337 R~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 337 RWFDGRQLTASIWDGKT 353 (382)
T ss_pred eeecceEEEEEEeCCcc
Confidence 89999988777765543
No 113
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.60 E-value=0.0024 Score=59.17 Aligned_cols=74 Identities=23% Similarity=0.364 Sum_probs=60.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCC-EEE--EEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 31 YTKVFVGGLAWETQSETMRRYFEQFGE-ILE--AVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 31 ~~~vfVgnLp~~~te~~L~~~F~~~G~-I~~--v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
...|-+.+||.+.+.|+|.++|..|-. |+. |.++.+. .|+..|-+||.|.++|+|..|....+ +...+|.+.|-
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvf 357 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVF 357 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEe
Confidence 457888999999999999999998864 444 6777775 49999999999999999999999888 55556655543
No 114
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.41 E-value=0.0062 Score=56.65 Aligned_cols=82 Identities=12% Similarity=0.134 Sum_probs=64.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecC---CCCCcceEEEEEEcCHHHHHHHHhcCCCccCCeeeeeeeec
Q 024889 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDK---NTGRSKGYGFVTFREPEAARRACADPTPFIDGRLRPATLFS 108 (261)
Q Consensus 32 ~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~---~tg~skG~gFV~F~~~~~A~~Ai~~~n~~i~Gr~~~v~~~~ 108 (261)
..|-|.||...++.+.++.+|.-.|+|.++.|+-+. .-....-.|||.|.|...+..|-...|..+-++.+.|..+.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 478899999999999999999999999999987632 12334569999999999999998888866666655555554
Q ss_pred CCCCC
Q 024889 109 GSTQA 113 (261)
Q Consensus 109 ~~~~~ 113 (261)
.....
T Consensus 88 ~~~~p 92 (479)
T KOG4676|consen 88 DEVIP 92 (479)
T ss_pred CCCCc
Confidence 44333
No 115
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.33 E-value=0.011 Score=53.28 Aligned_cols=60 Identities=20% Similarity=0.347 Sum_probs=48.1
Q ss_pred HHHHHHHHhcCCCEEEEEEeecCCCCCcc-eEEEEEEcCHHHHHHHHhcCC-CccCCeeeee
Q 024889 45 SETMRRYFEQFGEILEAVVITDKNTGRSK-GYGFVTFREPEAARRACADPT-PFIDGRLRPA 104 (261)
Q Consensus 45 e~~L~~~F~~~G~I~~v~v~~d~~tg~sk-G~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v 104 (261)
|+++++.+++||+|..|.|..++..-..+ ---||+|...++|.+|+..|| ..++||....
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A 361 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSA 361 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeh
Confidence 35778889999999999998876433332 347999999999999999999 7888886443
No 116
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.31 E-value=0.00014 Score=72.78 Aligned_cols=71 Identities=28% Similarity=0.392 Sum_probs=62.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCCCccCCe
Q 024889 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGR 100 (261)
Q Consensus 30 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n~~i~Gr 100 (261)
...++||.||+..+.+++|+..|..+|.|..+.+....++++.||.|+|+|.+.+++.+||+.....+.|+
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK 736 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGK 736 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhh
Confidence 34689999999999999999999999998888776556679999999999999999999999887666555
No 117
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.30 E-value=0.0036 Score=63.09 Aligned_cols=69 Identities=17% Similarity=0.255 Sum_probs=61.7
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCe
Q 024889 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGR 100 (261)
Q Consensus 31 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr 100 (261)
..+|||.|+++..|+++|+.+|.++|.++++.++..+. |+.||.+||.|.++.++.+++..+. ..+.-+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~-gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~ 805 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA-GKPKGKARVDYNTEADASRKVASVDVAGKREN 805 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhc-cccccceeccCCCcchhhhhcccchhhhhhhc
Confidence 57899999999999999999999999999999988875 9999999999999999999998876 444434
No 118
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.30 E-value=0.01 Score=57.41 Aligned_cols=61 Identities=25% Similarity=0.317 Sum_probs=48.6
Q ss_pred HHHHHHHhcCCCEEEEEEeec---CCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeee
Q 024889 46 ETMRRYFEQFGEILEAVVITD---KNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATL 106 (261)
Q Consensus 46 ~~L~~~F~~~G~I~~v~v~~d---~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~ 106 (261)
|+++.-+.+||.|..|.+.++ .+..-..|..||+|.+.+++++|.++|+ .++++|.....-
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsY 488 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASY 488 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEe
Confidence 455566678999999999887 2223456889999999999999999999 889999655443
No 119
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.26 E-value=0.0044 Score=54.64 Aligned_cols=62 Identities=26% Similarity=0.424 Sum_probs=56.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC
Q 024889 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT 94 (261)
Q Consensus 32 ~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n 94 (261)
..|+|.||...++.|.|.+.|+.||.|...++..|- .++..+-++|.|...-.+.+|+..++
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhc
Confidence 789999999999999999999999999998877774 48889999999999999999998876
No 120
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.12 E-value=0.0079 Score=55.90 Aligned_cols=69 Identities=25% Similarity=0.325 Sum_probs=52.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcC----CCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCCCccCCe
Q 024889 31 YTKVFVGGLAWETQSETMRRYFEQF----GEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGR 100 (261)
Q Consensus 31 ~~~vfVgnLp~~~te~~L~~~F~~~----G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n~~i~Gr 100 (261)
---|-..+||+++++.++.++|..- |..+.|.+++.++ |+..|-+||.|..+++|..||.+....|+.|
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd-grpTGdAFvlfa~ee~aq~aL~khrq~iGqR 233 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD-GRPTGDAFVLFACEEDAQFALRKHRQNIGQR 233 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC-CCcccceEEEecCHHHHHHHHHHHHHHHhHH
Confidence 3445567999999999999999632 2444555555444 9999999999999999999998744555554
No 121
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.11 E-value=0.13 Score=50.18 Aligned_cols=74 Identities=14% Similarity=0.183 Sum_probs=58.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHh--cCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC---CccCCeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFE--QFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT---PFIDGRLR 102 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~--~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n---~~i~Gr~~ 102 (261)
..+.|-|.+..|+..+-+|+++.+|+ .+-++.+|.+-.+. -=||+|+++.+|+.|.+.+. ++|-||.+
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 34557788899999999999999995 47788888776553 34899999999999988776 57888876
Q ss_pred eeeeec
Q 024889 103 PATLFS 108 (261)
Q Consensus 103 ~v~~~~ 108 (261)
..+++.
T Consensus 245 mARIKa 250 (684)
T KOG2591|consen 245 MARIKA 250 (684)
T ss_pred hhhhhh
Confidence 655543
No 122
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=95.98 E-value=0.039 Score=51.28 Aligned_cols=76 Identities=17% Similarity=0.191 Sum_probs=62.4
Q ss_pred CCCCCCcEEEEcCCCCC-CcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeee
Q 024889 26 FGDTTYTKVFVGGLAWE-TQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRP 103 (261)
Q Consensus 26 ~~~~~~~~vfVgnLp~~-~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~ 103 (261)
.+....+.+.|-+|+.. +..+.|..+|=.||.|.+|++++.+ .|-+.|+..|..+.++||..+| ..+-|..+.
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~ 356 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLN 356 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEE
Confidence 44556678889999875 6678899999999999999999876 4789999999999999999999 666666555
Q ss_pred eee
Q 024889 104 ATL 106 (261)
Q Consensus 104 v~~ 106 (261)
+..
T Consensus 357 v~~ 359 (494)
T KOG1456|consen 357 VCV 359 (494)
T ss_pred Eee
Confidence 544
No 123
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.93 E-value=0.0066 Score=60.16 Aligned_cols=81 Identities=19% Similarity=0.114 Sum_probs=64.5
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEE-EEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCee
Q 024889 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE-AVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRL 101 (261)
Q Consensus 24 ~~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~-v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~ 101 (261)
.++...-...|||..||..+++.++.++|...-.|++ |.|.+.+ +++.++.|||+|..++++.+|+.... +.+.-|.
T Consensus 427 vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~ 505 (944)
T KOG4307|consen 427 VPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRI 505 (944)
T ss_pred CCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceE
Confidence 3555666789999999999999999999988777777 5555554 58889999999999999888887777 6666665
Q ss_pred eeee
Q 024889 102 RPAT 105 (261)
Q Consensus 102 ~~v~ 105 (261)
++|.
T Consensus 506 irv~ 509 (944)
T KOG4307|consen 506 IRVD 509 (944)
T ss_pred EEee
Confidence 5543
No 124
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=95.89 E-value=0.36 Score=45.04 Aligned_cols=73 Identities=16% Similarity=0.181 Sum_probs=55.2
Q ss_pred CCcEEEEc--CCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeee
Q 024889 30 TYTKVFVG--GLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATL 106 (261)
Q Consensus 30 ~~~~vfVg--nLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~ 106 (261)
.++.|.+. |--..+|-|-|..+....|+|.+|.|++. +|. -|.|+|++.+.|++|.+.|| ..|-...+..++
T Consensus 119 pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrAk~alNGADIYsGCCTLKI 193 (494)
T KOG1456|consen 119 PNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRAKAALNGADIYSGCCTLKI 193 (494)
T ss_pred CCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHHHhhcccccccccceeEEE
Confidence 33444444 44456899999999999999999999875 344 68999999999999999999 666554344444
Q ss_pred e
Q 024889 107 F 107 (261)
Q Consensus 107 ~ 107 (261)
.
T Consensus 194 e 194 (494)
T KOG1456|consen 194 E 194 (494)
T ss_pred E
Confidence 3
No 125
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.79 E-value=0.0037 Score=55.06 Aligned_cols=59 Identities=31% Similarity=0.375 Sum_probs=45.8
Q ss_pred HHHHHHh-cCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeee
Q 024889 47 TMRRYFE-QFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATL 106 (261)
Q Consensus 47 ~L~~~F~-~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~ 106 (261)
+|...|+ +||+|++++|-.+.. -..+|-.+|.|..+++|++|++.+| -++.|+.+-.++
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~ 144 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAEL 144 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeee
Confidence 4444444 899999997755531 3457899999999999999999999 899999765544
No 126
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.56 E-value=0.043 Score=44.76 Aligned_cols=55 Identities=25% Similarity=0.330 Sum_probs=44.5
Q ss_pred HHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCCCccCCeeeeeeeecC
Q 024889 47 TMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRLRPATLFSG 109 (261)
Q Consensus 47 ~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n~~i~Gr~~~v~~~~~ 109 (261)
+|.+.|..||++.-++++.+ .-.|+|.+-+.|.+|+......|+|+.++++++..
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE---
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCCc
Confidence 66778889999888888766 46999999999999999888999999888887643
No 127
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.51 E-value=0.004 Score=63.10 Aligned_cols=98 Identities=18% Similarity=0.239 Sum_probs=68.8
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeee
Q 024889 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPA 104 (261)
Q Consensus 26 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v 104 (261)
.+...+++||+|||+..+++.+|+..|..+|.|.+|.|-+-+. +.-.-|+||.|.+-+.+-+|+.++. ..|..-.++.
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 3455678999999999999999999999999999998866543 4445599999999999999988877 3333222222
Q ss_pred eeecCCCCCCCCCCcCCCCC
Q 024889 105 TLFSGSTQATRGPYIGSFGY 124 (261)
Q Consensus 105 ~~~~~~~~~~r~~~~~~~~~ 124 (261)
.+-.......+..++++++.
T Consensus 446 glG~~kst~ttr~~sgglg~ 465 (975)
T KOG0112|consen 446 GLGQPKSTPTTRLQSGGLGP 465 (975)
T ss_pred cccccccccceeeccCCCCC
Confidence 22221333334445554443
No 128
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.89 E-value=0.072 Score=39.40 Aligned_cols=55 Identities=22% Similarity=0.331 Sum_probs=41.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC
Q 024889 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT 94 (261)
Q Consensus 32 ~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n 94 (261)
..||--..|.++...||.++|+.||.|. |.++.|. -|||...+++.|..++..+.
T Consensus 9 dHVFhltFPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLTFPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE--TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEeCchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 3444444999999999999999999975 6677763 79999999999998887765
No 129
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.49 E-value=0.014 Score=53.31 Aligned_cols=73 Identities=29% Similarity=0.423 Sum_probs=56.2
Q ss_pred CCCcEEEEcCCCCCCcHHHH---HHHHhcCCCEEEEEEeecCC--CCC-cceEEEEEEcCHHHHHHHHhcCC-CccCCee
Q 024889 29 TTYTKVFVGGLAWETQSETM---RRYFEQFGEILEAVVITDKN--TGR-SKGYGFVTFREPEAARRACADPT-PFIDGRL 101 (261)
Q Consensus 29 ~~~~~vfVgnLp~~~te~~L---~~~F~~~G~I~~v~v~~d~~--tg~-skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~ 101 (261)
.....+||-+|+..+.++++ .+.|.+||.|..|.+.+++. .+. ...-++|+|..+++|.+||...+ ..++|+.
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 34467888899888776655 45788999999999888762 111 12348899999999999999999 7788885
No 130
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=94.45 E-value=0.032 Score=50.58 Aligned_cols=73 Identities=19% Similarity=0.172 Sum_probs=63.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCee
Q 024889 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRL 101 (261)
Q Consensus 29 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~ 101 (261)
...+++||+++.+.+.+.++..+|...|.+..+.+........++|++.|.|...+.+..||+... ..+.++.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~ 159 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNK 159 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhcccccccc
Confidence 457899999999999999999999999998888887777779999999999999999999999877 5566553
No 131
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.22 E-value=0.31 Score=44.24 Aligned_cols=61 Identities=20% Similarity=0.299 Sum_probs=45.9
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCCCccCCe
Q 024889 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGR 100 (261)
Q Consensus 33 ~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n~~i~Gr 100 (261)
=|-|=+++..- -..|..+|++||+|++.+...+ --+-+|.|.++.+|+|||.....+|+|.
T Consensus 199 WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~n------gNwMhirYssr~~A~KALskng~ii~g~ 259 (350)
T KOG4285|consen 199 WVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPSN------GNWMHIRYSSRTHAQKALSKNGTIIDGD 259 (350)
T ss_pred eEEEeccCccc-hhHHHHHHHhhCeeeeeecCCC------CceEEEEecchhHHHHhhhhcCeeeccc
Confidence 34444666543 3567789999999998766533 2388999999999999999876778776
No 132
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=92.94 E-value=0.11 Score=53.00 Aligned_cols=67 Identities=25% Similarity=0.387 Sum_probs=57.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCe
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGR 100 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr 100 (261)
....+.+||++|..++....|...|..||.|..|.+-.. .-|++|.+.+...++.|++.|. ..|.+-
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~rgap~G~P 519 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDMRGAPLGGP 519 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHHhcCcCCCC
Confidence 445689999999999999999999999999999877443 2399999999999999999988 556554
No 133
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=92.85 E-value=0.1 Score=51.09 Aligned_cols=71 Identities=13% Similarity=0.142 Sum_probs=54.5
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhc-CCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC--CccCCee
Q 024889 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQ-FGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT--PFIDGRL 101 (261)
Q Consensus 25 ~~~~~~~~~vfVgnLp~~~te~~L~~~F~~-~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n--~~i~Gr~ 101 (261)
|.-......|+|.||-.-+|.-.|++++.+ .|.|.+. | .| +-|..|||.|.+.++|...+..|| .+-.+..
T Consensus 438 PsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-W-mD----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNP 511 (718)
T KOG2416|consen 438 PSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-W-MD----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNP 511 (718)
T ss_pred CCCCCccceEeeecccccchHHHHHHHHhhccCchHHH-H-HH----HhhcceeEecccHHHHHHHHHHHhccccCCCCC
Confidence 444556678999999999999999999984 5556665 3 33 236699999999999999999888 3444443
No 134
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=90.90 E-value=1 Score=36.80 Aligned_cols=75 Identities=17% Similarity=0.240 Sum_probs=53.6
Q ss_pred CCCCCCCcEEEEcCCCCCCc-HHHH---HHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCCCccCCe
Q 024889 25 PFGDTTYTKVFVGGLAWETQ-SETM---RRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGR 100 (261)
Q Consensus 25 ~~~~~~~~~vfVgnLp~~~t-e~~L---~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n~~i~Gr 100 (261)
...+..-.+|.|.=|..++. .+|| ...++.||.|.+|.+. | |--|.|.|+|..+|-+|+.......-|.
T Consensus 80 ~~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s~~pgt 152 (166)
T PF15023_consen 80 NTKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQSRAPGT 152 (166)
T ss_pred cCCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcCCCCCc
Confidence 44566778888887666653 2444 4455789999998763 2 2379999999999999999887666666
Q ss_pred eeeeee
Q 024889 101 LRPATL 106 (261)
Q Consensus 101 ~~~v~~ 106 (261)
...+.+
T Consensus 153 m~qCsW 158 (166)
T PF15023_consen 153 MFQCSW 158 (166)
T ss_pred eEEeec
Confidence 555443
No 135
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=90.30 E-value=2.9 Score=32.49 Aligned_cols=64 Identities=16% Similarity=0.171 Sum_probs=46.2
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcCC-CEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccC
Q 024889 33 KVFVGGLAWETQSETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFID 98 (261)
Q Consensus 33 ~vfVgnLp~~~te~~L~~~F~~~G-~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~ 98 (261)
.+.+...+..++.++|..+.+.+- .|..++|++|. ..++--+.++|++.++|++-.++.| ..++
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 334445556666677766666554 57888999984 4477889999999999999998877 4443
No 136
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=89.78 E-value=0.18 Score=48.24 Aligned_cols=72 Identities=19% Similarity=0.188 Sum_probs=53.6
Q ss_pred CcEEEEcCCCCCC-cHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCCCccCCeeeeeeeec
Q 024889 31 YTKVFVGGLAWET-QSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRLRPATLFS 108 (261)
Q Consensus 31 ~~~vfVgnLp~~~-te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n~~i~Gr~~~v~~~~ 108 (261)
.+.|-+.-.+... +-++|..+|.+||+|..|.|-... -.|.|+|.+..+|-+|-..-...|++|.+++.+..
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHN 444 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhccccceecCceeEEEEec
Confidence 3444444445543 558999999999999999885543 37899999999997777765688999987765543
No 137
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=89.53 E-value=1.5 Score=31.30 Aligned_cols=65 Identities=14% Similarity=0.173 Sum_probs=37.1
Q ss_pred EEEEc-CCCCCCcHHHHHHHHhcCC-----CEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 33 KVFVG-GLAWETQSETMRRYFEQFG-----EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 33 ~vfVg-nLp~~~te~~L~~~F~~~G-----~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
++||. +--..++..+|..++..-+ +|-.+.|..+ |.||+-... .|+++++.++ ..++|+.++++
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEE
Confidence 45554 3345677888888886543 5667777655 889988754 7788888888 88999977665
Q ss_pred e
Q 024889 106 L 106 (261)
Q Consensus 106 ~ 106 (261)
+
T Consensus 73 ~ 73 (74)
T PF03880_consen 73 R 73 (74)
T ss_dssp E
T ss_pred E
Confidence 4
No 138
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=89.45 E-value=0.37 Score=40.57 Aligned_cols=72 Identities=14% Similarity=0.121 Sum_probs=43.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhc-CCCE---EEEE--EeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-C-ccCCe
Q 024889 29 TTYTKVFVGGLAWETQSETMRRYFEQ-FGEI---LEAV--VITDKNTGRSKGYGFVTFREPEAARRACADPT-P-FIDGR 100 (261)
Q Consensus 29 ~~~~~vfVgnLp~~~te~~L~~~F~~-~G~I---~~v~--v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~-~i~Gr 100 (261)
....+|.|.+||+.+||+++.+.+.. ++.. ..+. +-.....-..-.-|+|.|.+.+++..-+..++ + .+|.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34579999999999999999886665 5554 3333 21111111234678999999999998888877 3 44554
No 139
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=87.47 E-value=0.83 Score=44.54 Aligned_cols=89 Identities=16% Similarity=0.122 Sum_probs=60.1
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhc----------------------------CCCEEEEEEeecCCCCCcceEEE
Q 024889 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQ----------------------------FGEILEAVVITDKNTGRSKGYGF 77 (261)
Q Consensus 26 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~----------------------------~G~I~~v~v~~d~~tg~skG~gF 77 (261)
..+...+++-|++|+..-...+|.++... .|+-..+-+..|=.+..+.||||
T Consensus 356 ~~~~~Rtt~~i~ni~n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAF 435 (549)
T KOG4660|consen 356 NYRDRRTTVMIKNIPNKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAF 435 (549)
T ss_pred ccccchhhhhhhccccchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeE
Confidence 34555667777787777666666665542 23333344555544567789999
Q ss_pred EEEcCHHHHHHHHhcCC-C---ccCCeeeeeeeecCCCCCCC
Q 024889 78 VTFREPEAARRACADPT-P---FIDGRLRPATLFSGSTQATR 115 (261)
Q Consensus 78 V~F~~~~~A~~Ai~~~n-~---~i~Gr~~~v~~~~~~~~~~r 115 (261)
|.|.+.+++.++.++.| . .+++ .+.+++.+.+.+.++
T Consensus 436 INm~sp~ai~~F~kAFnGk~W~~FnS-~Kia~itYArIQGk~ 476 (549)
T KOG4660|consen 436 INMTSPEAIIRFYKAFNGKKWEKFNS-EKIASITYARIQGKE 476 (549)
T ss_pred EeecCHHHHHHHHHHHcCCchhhhcc-eeeeeeehhhhhchH
Confidence 99999999988888776 2 4553 466778888777763
No 140
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=86.62 E-value=0.41 Score=47.53 Aligned_cols=67 Identities=21% Similarity=0.181 Sum_probs=57.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRP 103 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~ 103 (261)
.....+|||+|+...+.++-++.+...+|-|..++... |||.+|.+.....+|+..++ ..+++....
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~ 104 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLI 104 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhh
Confidence 44567999999999999999999999999988775533 99999999999999999988 778777433
No 141
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.05 E-value=2.5 Score=39.94 Aligned_cols=64 Identities=14% Similarity=0.141 Sum_probs=53.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCC-EEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCCCccCCe
Q 024889 30 TYTKVFVGGLAWETQSETMRRYFEQFGE-ILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGR 100 (261)
Q Consensus 30 ~~~~vfVgnLp~~~te~~L~~~F~~~G~-I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n~~i~Gr 100 (261)
-...|=|-+++.+...+||...|+.|+. -.+|+|+.|. ++|..|.+...|..||...+.+|.-|
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~kh~~lKiR 454 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLKHDWLKIR 454 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhccCceEEee
Confidence 4566778899999999999999999864 6778888875 79999999999999998866666655
No 142
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=80.62 E-value=4 Score=34.65 Aligned_cols=55 Identities=16% Similarity=0.179 Sum_probs=40.1
Q ss_pred cHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC---CccCCeeeee
Q 024889 44 QSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT---PFIDGRLRPA 104 (261)
Q Consensus 44 te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n---~~i~Gr~~~v 104 (261)
..+.|+++|..++.+....+++. -+-..|.|.+.++|.+|...++ ..+.|+.+++
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~ 65 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRV 65 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EE
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEE
Confidence 35789999999999888877765 2356899999999999999877 4577776444
No 143
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=77.47 E-value=7.3 Score=35.38 Aligned_cols=47 Identities=11% Similarity=0.130 Sum_probs=35.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCE-EEEEEeecCCCCCcceEEEEEEcCH
Q 024889 31 YTKVFVGGLAWETQSETMRRYFEQFGEI-LEAVVITDKNTGRSKGYGFVTFREP 83 (261)
Q Consensus 31 ~~~vfVgnLp~~~te~~L~~~F~~~G~I-~~v~v~~d~~tg~skG~gFV~F~~~ 83 (261)
.+-|+|+||+.++.-.||+..+.+.+.+ .++.| .-.+|-||+.|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCc
Confidence 3569999999999999999999876543 33433 22467899999764
No 144
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=77.24 E-value=9.1 Score=36.77 Aligned_cols=67 Identities=13% Similarity=0.168 Sum_probs=55.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCC-CEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccC
Q 024889 30 TYTKVFVGGLAWETQSETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFID 98 (261)
Q Consensus 30 ~~~~vfVgnLp~~~te~~L~~~F~~~G-~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~ 98 (261)
..+.|+|=.+|..++-.||..|...+- .|.++++++|. -.++=-..|+|++.++|..--++.| ..++
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 378899999999999999999987654 58999999974 2345578899999999999999887 4444
No 145
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=73.93 E-value=13 Score=26.10 Aligned_cols=44 Identities=14% Similarity=0.400 Sum_probs=33.6
Q ss_pred CCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC
Q 024889 42 ETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT 94 (261)
Q Consensus 42 ~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n 94 (261)
.++-++++..+.+|.- .+ |..|+ .|| ||.|.+.++|++|....+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~--I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~ 54 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DR--IRDDR-----TGF-YIVFNDSKEAERCFRAED 54 (66)
T ss_pred CccHHHHHHHHhcCCc-ce--EEecC-----CEE-EEEECChHHHHHHHHhcC
Confidence 4677899999999843 33 33443 244 899999999999999877
No 146
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=73.70 E-value=0.69 Score=40.32 Aligned_cols=65 Identities=28% Similarity=0.362 Sum_probs=53.4
Q ss_pred CCCCCCcEEEEcC----CCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHh
Q 024889 26 FGDTTYTKVFVGG----LAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACA 91 (261)
Q Consensus 26 ~~~~~~~~vfVgn----Lp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~ 91 (261)
++++.-.+++.|+ |+..++++.+.+.|+.-+.|..+++.++.+ |+++-++||++......-.++.
T Consensus 75 ~~~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~ 143 (267)
T KOG4454|consen 75 EEDEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALD 143 (267)
T ss_pred ccchhhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhh
Confidence 4566667889998 999999999999999999999999999986 8999999998765544444443
No 147
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=65.25 E-value=3.9 Score=42.04 Aligned_cols=56 Identities=21% Similarity=0.232 Sum_probs=48.5
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC
Q 024889 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT 94 (261)
Q Consensus 33 ~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n 94 (261)
+..+.|..-..+...|..+|.+||++.++..++|-+ .+.|+|...+.|..|++.+.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~ 355 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQ 355 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhc
Confidence 445566777888999999999999999998888854 89999999999999999877
No 148
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=64.79 E-value=17 Score=28.52 Aligned_cols=49 Identities=14% Similarity=0.217 Sum_probs=30.5
Q ss_pred CcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEc-CHHHHHHHHhcCC
Q 024889 43 TQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR-EPEAARRACADPT 94 (261)
Q Consensus 43 ~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~-~~~~A~~Ai~~~n 94 (261)
++.++|++.|..|..++ ++.+.++ ..++|++.|+|. +-.-...|+..-+
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~l~~ 78 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMRLEK 78 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHHHHH
Confidence 35589999999997764 6666664 467899999997 5555666666544
No 149
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=64.33 E-value=11 Score=31.60 Aligned_cols=66 Identities=21% Similarity=0.288 Sum_probs=46.8
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHh
Q 024889 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACA 91 (261)
Q Consensus 26 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~ 91 (261)
........+++++++..++++++...|..+|.+....+...........+.++.+.....+..++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 220 LLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred ccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhc
Confidence 445667899999999999999999999999999777776654433344455444444444444443
No 150
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=63.84 E-value=1.5 Score=41.30 Aligned_cols=60 Identities=17% Similarity=0.079 Sum_probs=50.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC
Q 024889 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT 94 (261)
Q Consensus 31 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n 94 (261)
.++|+|++|...+...++.+.|+.+|++....+-. +-..-+|-|+|........|+..++
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr~~g 210 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALRSHG 210 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHHhcc
Confidence 37899999999999999999999999988776643 3334577799999989899988776
No 151
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=57.32 E-value=9.6 Score=34.51 Aligned_cols=73 Identities=22% Similarity=0.320 Sum_probs=46.0
Q ss_pred CCCCcEEEEcCCCCC------------CcHHHHHHHHhcCCCEEEEEEee-c----CCCCCcceEEEEEE----------
Q 024889 28 DTTYTKVFVGGLAWE------------TQSETMRRYFEQFGEILEAVVIT-D----KNTGRSKGYGFVTF---------- 80 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~------------~te~~L~~~F~~~G~I~~v~v~~-d----~~tg~skG~gFV~F---------- 80 (261)
...+.+|++.+||-. -+|+.|+..|+.||+|..|.|.. | ..+|+..|.-|-.|
T Consensus 146 gerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffea 225 (445)
T KOG2891|consen 146 GERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEA 225 (445)
T ss_pred CCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHH
Confidence 344567888777642 46788999999999999988753 2 23455543333222
Q ss_pred -------cCHHHHHHHHhcCC--CccCCe
Q 024889 81 -------REPEAARRACADPT--PFIDGR 100 (261)
Q Consensus 81 -------~~~~~A~~Ai~~~n--~~i~Gr 100 (261)
..-..|..||..+. ..++++
T Consensus 226 yvqfmeykgfa~amdalr~~k~akk~d~~ 254 (445)
T KOG2891|consen 226 YVQFMEYKGFAQAMDALRGMKLAKKGDDG 254 (445)
T ss_pred HHHHHHHHhHHHHHHHHhcchHHhhcCCc
Confidence 33445666666655 455655
No 152
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.43 E-value=49 Score=32.96 Aligned_cols=73 Identities=18% Similarity=0.312 Sum_probs=54.3
Q ss_pred CCCCcEEEEcCCCCC-CcHHHHHHHHhcC----CCEEEEEEeecC----------CCCC---------------------
Q 024889 28 DTTYTKVFVGGLAWE-TQSETMRRYFEQF----GEILEAVVITDK----------NTGR--------------------- 71 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~-~te~~L~~~F~~~----G~I~~v~v~~d~----------~tg~--------------------- 71 (261)
....++|-|-||.|+ +..++|..+|..| |.|.+|.|-... .+|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456789999999997 7889999999876 689998864311 0111
Q ss_pred ---------------cc-eEEEEEEcCHHHHHHHHhcCC-CccCCe
Q 024889 72 ---------------SK-GYGFVTFREPEAARRACADPT-PFIDGR 100 (261)
Q Consensus 72 ---------------sk-G~gFV~F~~~~~A~~Ai~~~n-~~i~Gr 100 (261)
-| =||.|+|.+.+.|.+.-+.+. ..+...
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS 296 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS 296 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc
Confidence 11 378899999999999988887 555544
No 153
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=52.79 E-value=25 Score=32.10 Aligned_cols=58 Identities=14% Similarity=0.200 Sum_probs=45.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecC-------CCCCcceEEEEEEcCHHHHH
Q 024889 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDK-------NTGRSKGYGFVTFREPEAAR 87 (261)
Q Consensus 30 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~-------~tg~skG~gFV~F~~~~~A~ 87 (261)
..+.|...||..+++-.++.+.|.+||.|+.|.++.+. +..+.+....+.|-+++.+.
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CL 78 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICL 78 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHH
Confidence 45678889999999999999999999999999999875 11234567788888777654
No 154
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=45.25 E-value=3.9 Score=40.19 Aligned_cols=71 Identities=11% Similarity=0.089 Sum_probs=52.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCC
Q 024889 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDG 99 (261)
Q Consensus 29 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~G 99 (261)
...|.|||.|+.+.++-++|..+++.+--..++.+-.+-...+.+.++.|+|+---....||..+| +.+..
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 456789999999999999999999988766666665543335566788999986666666666665 44433
No 155
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=43.09 E-value=59 Score=22.63 Aligned_cols=18 Identities=39% Similarity=0.700 Sum_probs=14.9
Q ss_pred HHHHHHHhcCCCEEEEEE
Q 024889 46 ETMRRYFEQFGEILEAVV 63 (261)
Q Consensus 46 ~~L~~~F~~~G~I~~v~v 63 (261)
++||++|+..|+|.-+-+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999999876544
No 156
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=42.97 E-value=54 Score=24.31 Aligned_cols=48 Identities=23% Similarity=0.381 Sum_probs=33.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEc
Q 024889 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81 (261)
Q Consensus 31 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~ 81 (261)
..-||||+++..+.|.-...+.+..++-.-+-+..+. . ..||.|-+..
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~--n-eqG~~~~t~G 72 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDN--N-EQGFDFRTLG 72 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccC--C-CCCEEEEEeC
Confidence 3579999999999887777777655444434344442 2 6789998874
No 157
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=42.33 E-value=14 Score=27.55 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=21.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHH
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYF 52 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F 52 (261)
....++|-|.|||...+||+|++.+
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeE
Confidence 4556899999999999999999765
No 158
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=38.07 E-value=24 Score=21.82 Aligned_cols=16 Identities=13% Similarity=0.428 Sum_probs=10.3
Q ss_pred CCCcHHHHHHHHhcCC
Q 024889 41 WETQSETMRRYFEQFG 56 (261)
Q Consensus 41 ~~~te~~L~~~F~~~G 56 (261)
.++++++||+.|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4688999999998754
No 159
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=37.22 E-value=69 Score=23.60 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=21.3
Q ss_pred CEEEEEEeecCCCCCcceEEEEEEcC
Q 024889 57 EILEAVVITDKNTGRSKGYGFVTFRE 82 (261)
Q Consensus 57 ~I~~v~v~~d~~tg~skG~gFV~F~~ 82 (261)
+|++++|-.-...++.|+||-|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 47888887766569999999999987
No 160
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=37.04 E-value=13 Score=35.24 Aligned_cols=64 Identities=17% Similarity=0.145 Sum_probs=51.4
Q ss_pred CCCCcEEEEcCCCCCCcHH--------HHHHHHhc--CCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHh
Q 024889 28 DTTYTKVFVGGLAWETQSE--------TMRRYFEQ--FGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACA 91 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~--------~L~~~F~~--~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~ 91 (261)
+..-+.+|+.+...+.+++ ++...|.. .+.+..+..-+|.....++|-.|++|+..+.+.+.+.
T Consensus 171 ~~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 171 SQMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 3445678888877766555 89999987 6778888888876567889999999999999999995
No 161
>PRK10905 cell division protein DamX; Validated
Probab=36.14 E-value=85 Score=29.06 Aligned_cols=62 Identities=13% Similarity=0.134 Sum_probs=37.0
Q ss_pred EEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcc-eEEEEEEcCHHHHHHHHhcCCCcc
Q 024889 35 FVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSK-GYGFVTFREPEAARRACADPTPFI 97 (261)
Q Consensus 35 fVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~sk-G~gFV~F~~~~~A~~Ai~~~n~~i 97 (261)
|+=-|--..+++.|+++-.+.| +....+......|+.. -.-+=.|.++++|++||+.|-..|
T Consensus 248 YTLQL~A~Ss~~~l~~fakKlg-L~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa~v 310 (328)
T PRK10905 248 YTLQLSSSSNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPADV 310 (328)
T ss_pred eEEEEEecCCHHHHHHHHHHcC-CCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCHHH
Confidence 3333444456788888888774 3333343332224422 222336889999999999987444
No 162
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=35.34 E-value=44 Score=23.39 Aligned_cols=34 Identities=26% Similarity=0.371 Sum_probs=25.4
Q ss_pred CcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEE
Q 024889 43 TQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFV 78 (261)
Q Consensus 43 ~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV 78 (261)
.-|.+|.++|-+--+|+++.|...+ .-.||-|||
T Consensus 30 ~~e~eler~fl~~P~v~e~~l~EKK--ri~~G~gyV 63 (64)
T PF13046_consen 30 LVEVELERHFLPLPEVKEVALYEKK--RIRKGAGYV 63 (64)
T ss_pred HHHHHhhhhccCCCCceEEEEEEEE--eeeCCceeE
Confidence 4567888999888899999988764 334566665
No 163
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=34.63 E-value=66 Score=24.45 Aligned_cols=49 Identities=18% Similarity=0.243 Sum_probs=31.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcC
Q 024889 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRE 82 (261)
Q Consensus 31 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~ 82 (261)
..-||||+++..+.|.--..+-+.+++-.-+-+..+ +.. .||.|-++.+
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~--~~e-qG~~~~t~G~ 75 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWAT--NTE-SGFEFQTFGE 75 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcC--CCC-CCcEEEecCC
Confidence 357999999998887655555555544322323333 233 3999988875
No 164
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=34.59 E-value=76 Score=22.60 Aligned_cols=56 Identities=9% Similarity=0.113 Sum_probs=37.1
Q ss_pred HHHHHHHhcCC-CEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeee
Q 024889 46 ETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPA 104 (261)
Q Consensus 46 ~~L~~~F~~~G-~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v 104 (261)
++|++-|.+.| +++.+..++.++++..--.-||+.....+-.. -++ ..|+++...|
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~V 59 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTV 59 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEE
Confidence 46778888887 68888888887766555677888875543333 334 5566665333
No 165
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=33.62 E-value=22 Score=30.13 Aligned_cols=66 Identities=20% Similarity=0.166 Sum_probs=43.0
Q ss_pred CCCcEEEEcCCCCCCcH-----HHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCe
Q 024889 29 TTYTKVFVGGLAWETQS-----ETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGR 100 (261)
Q Consensus 29 ~~~~~vfVgnLp~~~te-----~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr 100 (261)
+-.+.+++-+++.++-. .....+|.++-+.....+++ +++..-|.|.+.+.|.+|...++ ..+.|+
T Consensus 8 dlp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~ 79 (193)
T KOG4019|consen 8 DLPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGK 79 (193)
T ss_pred cccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCC
Confidence 34456777777665432 23344555554444333433 34566788999999999999998 889888
No 166
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.59 E-value=2e+02 Score=23.73 Aligned_cols=54 Identities=15% Similarity=0.222 Sum_probs=39.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhc---CCCEEEEEEeecCCC---------CCcce-EEEEEEcCHHH
Q 024889 32 TKVFVGGLAWETQSETMRRYFEQ---FGEILEAVVITDKNT---------GRSKG-YGFVTFREPEA 85 (261)
Q Consensus 32 ~~vfVgnLp~~~te~~L~~~F~~---~G~I~~v~v~~d~~t---------g~skG-~gFV~F~~~~~ 85 (261)
.+|++.-+...++|++.++..++ -++|++|.+-+.+++ ...|. |-+|.|.+-..
T Consensus 88 ~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~ 154 (161)
T COG5353 88 GKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKE 154 (161)
T ss_pred CeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchh
Confidence 78999999999999999999965 457777776554321 22234 88888887544
No 167
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=33.19 E-value=1.8e+02 Score=21.42 Aligned_cols=45 Identities=20% Similarity=0.158 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCC-CEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcC
Q 024889 45 SETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP 93 (261)
Q Consensus 45 e~~L~~~F~~~G-~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~ 93 (261)
++.+++++++.| +++++.+.. |.--....+++.|.+.|.++.-.+
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~----G~yD~v~i~eaPD~~~a~~~~l~i 67 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTL----GEYDFVVIVEAPDDETAAAASLAI 67 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEec----CCCCEEEEEEcCCHHHHHHHHHHH
Confidence 466788888775 688787765 444568888999999888776543
No 168
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.17 E-value=4.7e+02 Score=25.53 Aligned_cols=13 Identities=31% Similarity=0.675 Sum_probs=7.2
Q ss_pred HHHHHhcCCCEEE
Q 024889 48 MRRYFEQFGEILE 60 (261)
Q Consensus 48 L~~~F~~~G~I~~ 60 (261)
|-.+|+-||.|..
T Consensus 247 lG~I~EiFGpV~~ 259 (483)
T KOG2236|consen 247 LGQIFEIFGPVKN 259 (483)
T ss_pred chhhhhhhcccCC
Confidence 4456666665543
No 169
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=32.79 E-value=81 Score=27.83 Aligned_cols=54 Identities=28% Similarity=0.437 Sum_probs=37.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHh--cCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCCCccCCe
Q 024889 30 TYTKVFVGGLAWETQSETMRRYFE--QFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGR 100 (261)
Q Consensus 30 ~~~~vfVgnLp~~~te~~L~~~F~--~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n~~i~Gr 100 (261)
...-++|||||..+++.-|.+++. .+|.+. .+.+-..|.|++.+...+....++
T Consensus 96 ~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~-----------------~~l~vq~e~a~rl~a~pg~~~~~~ 151 (262)
T PF00398_consen 96 NQPLLVVGNLPYNISSPILRKLLELYRFGRVR-----------------MVLMVQKEVAERLLAKPGSKRYSR 151 (262)
T ss_dssp SSEEEEEEEETGTGHHHHHHHHHHHGGGCEEE-----------------EEEEEEHHHHHHHHTSTTSTTCSH
T ss_pred CCceEEEEEecccchHHHHHHHhhcccccccc-----------------eEEEEehhhhhhccCCCCCCccch
Confidence 456789999999999999999986 344332 233334678888887665444444
No 170
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=32.77 E-value=1e+02 Score=26.23 Aligned_cols=50 Identities=16% Similarity=0.034 Sum_probs=34.4
Q ss_pred CcHHHHHHHHhc-CCCEEEEEEeecCCCC--CcceEEEEEEcCHHHHHHHHhcC
Q 024889 43 TQSETMRRYFEQ-FGEILEAVVITDKNTG--RSKGYGFVTFREPEAARRACADP 93 (261)
Q Consensus 43 ~te~~L~~~F~~-~G~I~~v~v~~d~~tg--~skG~gFV~F~~~~~A~~Ai~~~ 93 (261)
.+++.|.++..- -|++..+.+-+.. .+ ..+|--||.|.+.+.|.++++.-
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~~ 170 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDTH 170 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhhh
Confidence 566666665532 2577777664432 23 57899999999999999888753
No 171
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=32.65 E-value=51 Score=29.80 Aligned_cols=19 Identities=32% Similarity=0.310 Sum_probs=16.9
Q ss_pred EEEEEcCHHHHHHHHhcCC
Q 024889 76 GFVTFREPEAARRACADPT 94 (261)
Q Consensus 76 gFV~F~~~~~A~~Ai~~~n 94 (261)
|||+|++.++|+.|++...
T Consensus 1 aFVtF~~~~~a~~~~q~~~ 19 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLL 19 (325)
T ss_pred CEEEECCHHHHHHHHHHHh
Confidence 6999999999999999644
No 172
>PF14401 RLAN: RimK-like ATPgrasp N-terminal domain
Probab=32.44 E-value=93 Score=25.49 Aligned_cols=62 Identities=16% Similarity=0.232 Sum_probs=44.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCC-CEEEEEEeecCCCCCcceEEEEEEcCHHHHHHH
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRA 89 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G-~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~A 89 (261)
+.-.-+||.|.-+..--++--+++|+.|- .|.++.+.++....+-+....+...+..+.++.
T Consensus 84 ~~~~l~iyFG~~~~~~~~~lAr~lFe~F~~PlL~v~~~~~~~~w~i~~i~~~~~~~l~~~e~~ 146 (153)
T PF14401_consen 84 ERFELSIYFGQTPDPRLERLARQLFERFPCPLLEVEFVRDDGKWRISSIKPLSLSELSEEEQD 146 (153)
T ss_pred ceEEEEEEECCCCCHHHHHHHHHHHHhCCCceEEEEEEecCCcEEEeeEeecChhhCCHHHHH
Confidence 34445789998866666777799999985 688888888754456667777777665555544
No 173
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=31.79 E-value=55 Score=23.81 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=22.5
Q ss_pred CcceEEEEEEcCHHHHHHHHhcCCCcc
Q 024889 71 RSKGYGFVTFREPEAARRACADPTPFI 97 (261)
Q Consensus 71 ~skG~gFV~F~~~~~A~~Ai~~~n~~i 97 (261)
..|||-||+=.+.+++.+||..+.+..
T Consensus 42 ~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 42 SLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp TSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CCceEEEEEeCCHHHHHHHHhccccee
Confidence 369999999999999999999876433
No 174
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=30.92 E-value=1.3e+02 Score=21.15 Aligned_cols=56 Identities=13% Similarity=0.145 Sum_probs=37.1
Q ss_pred HHHHHHHhcCC-CEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeee
Q 024889 46 ETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPA 104 (261)
Q Consensus 46 ~~L~~~F~~~G-~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v 104 (261)
++|++-|...| .|.++.-++.+.+++.--.-||+.....+.. +-++ ..|++..+++
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k---~i~~Ik~l~~~~V~v 59 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNK---EIYKIKTLCGQRVKV 59 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccc---ceeehHhhCCeEEEE
Confidence 56777887777 6888888888766666678888887654422 2334 5566665333
No 175
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=29.82 E-value=1.9e+02 Score=21.31 Aligned_cols=57 Identities=11% Similarity=0.165 Sum_probs=40.4
Q ss_pred EEEEcCCCCCCcHHHHHHHHhc-CC-CEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhc
Q 024889 33 KVFVGGLAWETQSETMRRYFEQ-FG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92 (261)
Q Consensus 33 ~vfVgnLp~~~te~~L~~~F~~-~G-~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~ 92 (261)
+.|+=.++.+.+..++++.+++ |+ +|.+|..+.-+. ..-=|||++...++|.+....
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHh
Confidence 3445557888999999999976 55 577776655432 223589999988888877554
No 176
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=29.39 E-value=1.4e+02 Score=22.70 Aligned_cols=48 Identities=25% Similarity=0.399 Sum_probs=24.0
Q ss_pred CCcHHHHHHHH-hcCCCEEEEEEeecC--CCC--CcceEEEEEEcCHHHHHHHHh
Q 024889 42 ETQSETMRRYF-EQFGEILEAVVITDK--NTG--RSKGYGFVTFREPEAARRACA 91 (261)
Q Consensus 42 ~~te~~L~~~F-~~~G~I~~v~v~~d~--~tg--~skG~gFV~F~~~~~A~~Ai~ 91 (261)
..+..+|++-+ ..|+.=.+..++..- .-| +++|||.| |.+.+. .+.++
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~-~kk~E 82 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKER-ARKIE 82 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHH-HHhhC
Confidence 56777887766 456643344444331 124 45555544 444444 43443
No 177
>PRK11901 hypothetical protein; Reviewed
Probab=28.56 E-value=1.7e+02 Score=27.13 Aligned_cols=57 Identities=21% Similarity=0.288 Sum_probs=36.7
Q ss_pred CCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEE--EEEcCHHHHHHHHhcCCCcc
Q 024889 39 LAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGF--VTFREPEAARRACADPTPFI 97 (261)
Q Consensus 39 Lp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gF--V~F~~~~~A~~Ai~~~n~~i 97 (261)
|--..+++.|++|.++.+ +..+.|.+....|+. .|.. =.|.+.++|++||+.|-..|
T Consensus 250 L~Aas~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 250 LSSASRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred eecCCCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCHHH
Confidence 333456888888887774 455555554333442 2332 35789999999999987433
No 178
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=28.43 E-value=1.3e+02 Score=20.93 Aligned_cols=42 Identities=19% Similarity=0.259 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCCEEEEEEeecCCCCC-cceEEEEEEcCHHHHHHHHhcC
Q 024889 46 ETMRRYFEQFGEILEAVVITDKNTGR-SKGYGFVTFREPEAARRACADP 93 (261)
Q Consensus 46 ~~L~~~F~~~G~I~~v~v~~d~~tg~-skG~gFV~F~~~~~A~~Ai~~~ 93 (261)
+++++.++++| +.-+++. |- .-++.|+.+.+.+.++++++.+
T Consensus 37 ~~~~~~~~~~G-a~~~~~s-----GsG~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMS-----GSGGGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEE-----TTSSSSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecC-----CCCCCCeEEEEECCHHHHHHHHHHH
Confidence 45677777888 4444442 22 1358888888999988888764
No 179
>PF03875 Statherin: Statherin; InterPro: IPR005575 Statherin functions biologically to inhibit the nucleation and growth of calcium phosphate minerals. The N terminus of statherin is highly charged, the glutamic acids of which have been shown to be important in the recognition hydroxyapatite [].
Probab=27.54 E-value=68 Score=20.02 Aligned_cols=11 Identities=55% Similarity=1.002 Sum_probs=4.3
Q ss_pred CCCCCCCCCcc
Q 024889 151 VYPQGIYNPYQ 161 (261)
Q Consensus 151 ~y~~~~~~py~ 161 (261)
.|||.+-.+|+
T Consensus 30 lypqpyqp~yq 40 (42)
T PF03875_consen 30 LYPQPYQPPYQ 40 (42)
T ss_pred CCCCCCCCccc
Confidence 34443333333
No 180
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=26.94 E-value=1.2e+02 Score=23.01 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=20.2
Q ss_pred CEEEEEEeecCCCCCcceEEEEEEcC
Q 024889 57 EILEAVVITDKNTGRSKGYGFVTFRE 82 (261)
Q Consensus 57 ~I~~v~v~~d~~tg~skG~gFV~F~~ 82 (261)
+|++|+|-.-...|+-|+||-|+|.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 47788776554458899999999986
No 181
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=26.35 E-value=9.2 Score=25.88 Aligned_cols=37 Identities=22% Similarity=0.242 Sum_probs=19.2
Q ss_pred cceEEEEEEcC-HHHHHHHHhcCCCccCCeeeeeeeec
Q 024889 72 SKGYGFVTFRE-PEAARRACADPTPFIDGRLRPATLFS 108 (261)
Q Consensus 72 skG~gFV~F~~-~~~A~~Ai~~~n~~i~Gr~~~v~~~~ 108 (261)
.+|||||.-.+ .++.--.-..|+..++|-...+++..
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A~~gD~V~v~i~~ 44 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGAMDGDKVLVRITP 44 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS-TT-EEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCCCCCCEEEEEEec
Confidence 47999999987 22221222344556667666666554
No 182
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=26.16 E-value=85 Score=30.12 Aligned_cols=40 Identities=15% Similarity=0.448 Sum_probs=31.5
Q ss_pred CCCCCCCcEEEEcCCCCC-CcHHHHHHHHhcC----CCEEEEEEe
Q 024889 25 PFGDTTYTKVFVGGLAWE-TQSETMRRYFEQF----GEILEAVVI 64 (261)
Q Consensus 25 ~~~~~~~~~vfVgnLp~~-~te~~L~~~F~~~----G~I~~v~v~ 64 (261)
|+.....++|-|-||+|+ +...+|..+|+.| |.|..|.|-
T Consensus 140 pe~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iy 184 (622)
T COG5638 140 PEEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIY 184 (622)
T ss_pred cCCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEec
Confidence 444566789999999997 7888999999876 678877764
No 183
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=26.15 E-value=1.8e+02 Score=21.75 Aligned_cols=49 Identities=18% Similarity=0.277 Sum_probs=29.1
Q ss_pred EEEEcCCCCCCcHHHH---HHHHhcCCCEEEEEE--eecCCCCCcceEEEEEEc
Q 024889 33 KVFVGGLAWETQSETM---RRYFEQFGEILEAVV--ITDKNTGRSKGYGFVTFR 81 (261)
Q Consensus 33 ~vfVgnLp~~~te~~L---~~~F~~~G~I~~v~v--~~d~~tg~skG~gFV~F~ 81 (261)
..|+.+||.++.+.++ ++.|..+..-.+|.+ ........+.|++.+.+.
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 4588999999988666 455555553333333 123345677787776654
No 184
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=26.03 E-value=60 Score=24.19 Aligned_cols=49 Identities=18% Similarity=0.279 Sum_probs=28.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhc-CCCEEEEEEeecCCCCCcceEEEEEEcC
Q 024889 31 YTKVFVGGLAWETQSETMRRYFEQ-FGEILEAVVITDKNTGRSKGYGFVTFRE 82 (261)
Q Consensus 31 ~~~vfVgnLp~~~te~~L~~~F~~-~G~I~~v~v~~d~~tg~skG~gFV~F~~ 82 (261)
..-||||+++..+.|.--..+-+. .++- .+.++.. +....||.|-++.+
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~~G-~avm~~~--~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 25 RAGVYVGGVSASVRERIWDYLAQHCPPKG-SLVITWS--SNTCPGFEFFTLGE 74 (87)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCc-cEEEEEe--CCCCCCcEEEecCC
Confidence 357999999998887544444444 2222 2222222 12345788887764
No 185
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=25.62 E-value=2e+02 Score=18.80 Aligned_cols=55 Identities=15% Similarity=0.125 Sum_probs=40.5
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCH----HHHHHHHhcC
Q 024889 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP----EAARRACADP 93 (261)
Q Consensus 33 ~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~----~~A~~Ai~~~ 93 (261)
++.|.||.-.--...+++.+.+.-.|.++.+-... +-.-|+|... ++..++|+..
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~------~~v~v~~~~~~~~~~~i~~~i~~~ 59 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET------KTVTVTYDPDKTSIEKIIEAIEKA 59 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEESTTTSCHHHHHHHHHHT
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC------CEEEEEEecCCCCHHHHHHHHHHh
Confidence 46777887777788999999999889998886553 3677777633 5666666653
No 186
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=24.63 E-value=44 Score=29.99 Aligned_cols=70 Identities=13% Similarity=0.242 Sum_probs=54.7
Q ss_pred CCCCcEEEEcCCCCCCcHHH-H--HHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccC
Q 024889 28 DTTYTKVFVGGLAWETQSET-M--RRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFID 98 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~-L--~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~ 98 (261)
+.....+|++++-..+..+- | ...|+.+-.+...++++++. +..++++|+.|.+.+...++-.+-+ +.+.
T Consensus 93 ~P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p-~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~ 166 (290)
T KOG0226|consen 93 APAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRP-QPIRPEAFESFKASDALLKAETEKEKKKIG 166 (290)
T ss_pred CcccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCC-CccCcccccCcchhhhhhhhcccccccccc
Confidence 45667788888877777665 4 67888888888889998875 8889999999998888877777666 3443
No 187
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=24.17 E-value=43 Score=26.45 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=31.2
Q ss_pred CCCCcHHHHHHHHhc---CCCEEEEEEeecCCCCCcceEEEEEEcCH
Q 024889 40 AWETQSETMRRYFEQ---FGEILEAVVITDKNTGRSKGYGFVTFREP 83 (261)
Q Consensus 40 p~~~te~~L~~~F~~---~G~I~~v~v~~d~~tg~skG~gFV~F~~~ 83 (261)
|..+|-.+||++|++ |-.|++-.|.+|-....+-..||+.|...
T Consensus 83 PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 83 PYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred ceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 557899999999963 66677767777743344556888888643
No 188
>PF14893 PNMA: PNMA
Probab=23.60 E-value=30 Score=32.20 Aligned_cols=25 Identities=8% Similarity=0.197 Sum_probs=21.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhc
Q 024889 30 TYTKVFVGGLAWETQSETMRRYFEQ 54 (261)
Q Consensus 30 ~~~~vfVgnLp~~~te~~L~~~F~~ 54 (261)
.-+.|.|.+||.+|+++++.+.+..
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHH
Confidence 3467899999999999999888753
No 189
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=22.46 E-value=57 Score=28.89 Aligned_cols=35 Identities=17% Similarity=0.357 Sum_probs=29.2
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEE
Q 024889 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60 (261)
Q Consensus 26 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~ 60 (261)
....+.+++|+-|+|..++++.|.++.+..|-+.+
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~ 69 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQE 69 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhh
Confidence 34556789999999999999999999999885443
No 190
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.42 E-value=1.6e+02 Score=24.18 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=38.0
Q ss_pred CCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC
Q 024889 38 GLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT 94 (261)
Q Consensus 38 nLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n 94 (261)
.|+..+.++.|.++.+-.|-|.+.+ -.| -.+.|.|.+...+||+++.
T Consensus 118 ~L~epl~~eRlqDi~E~hgvIiE~~-E~D---------~V~i~Gd~drVk~aLke~~ 164 (170)
T COG4010 118 HLREPLAEERLQDIAETHGVIIEFE-EYD---------LVAIYGDSDRVKKALKEIG 164 (170)
T ss_pred ecCchhHHHHHHHHHHhhheeEEee-ecc---------EEEEeccHHHHHHHHHHHH
Confidence 5788899999999999999888875 333 2567889999999998753
No 191
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=21.39 E-value=1.7e+02 Score=28.57 Aligned_cols=59 Identities=15% Similarity=0.186 Sum_probs=43.9
Q ss_pred EEcCCCCCCcH---HHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCCCccCCeee
Q 024889 35 FVGGLAWETQS---ETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRLR 102 (261)
Q Consensus 35 fVgnLp~~~te---~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n~~i~Gr~~ 102 (261)
+||||..-... ..++++=++||.|-.+++-.. -.|.-.+.+.|++|+......+.+|..
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLVKQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHHhCCccccCCCC
Confidence 58888665443 556666679999997777322 378889999999999987778888853
No 192
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=20.53 E-value=2.1e+02 Score=23.15 Aligned_cols=32 Identities=22% Similarity=0.224 Sum_probs=25.5
Q ss_pred EEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC
Q 024889 58 ILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT 94 (261)
Q Consensus 58 I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n 94 (261)
|.+|.+... .+||-||+-...+++..+|..+.
T Consensus 36 i~~i~vp~~-----fpGYVfVe~~~~~~~~~~i~~v~ 67 (153)
T PRK08559 36 IYAILAPPE-----LKGYVLVEAESKGAVEEAIRGIP 67 (153)
T ss_pred EEEEEccCC-----CCcEEEEEEEChHHHHHHHhcCC
Confidence 666655433 68999999998899999998776
Done!