Query 024889
Match_columns 261
No_of_seqs 272 out of 2088
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 16:12:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024889.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024889hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cpz_A CUG triplet repeat RNA- 99.8 1.1E-20 3.9E-25 146.2 13.0 87 24-110 18-105 (115)
2 2dgo_A Cytotoxic granule-assoc 99.8 3.5E-20 1.2E-24 143.2 15.2 87 27-113 11-98 (115)
3 4fxv_A ELAV-like protein 1; RN 99.8 8.1E-21 2.8E-25 144.1 10.3 78 30-107 18-96 (99)
4 3s8s_A Histone-lysine N-methyl 99.8 1.2E-20 4.2E-25 145.9 11.0 82 28-109 3-85 (110)
5 2cqd_A RNA-binding region cont 99.8 6.9E-20 2.4E-24 141.9 15.1 85 25-109 11-95 (116)
6 2cq0_A Eukaryotic translation 99.8 5.9E-20 2E-24 139.3 12.3 84 27-110 11-95 (103)
7 2dng_A Eukaryotic translation 99.8 9.1E-20 3.1E-24 138.3 13.2 84 26-111 10-94 (103)
8 2do4_A Squamous cell carcinoma 99.8 7.9E-20 2.7E-24 137.8 12.0 83 26-109 12-95 (100)
9 2dh8_A DAZ-associated protein 99.8 5.6E-20 1.9E-24 139.9 11.1 82 27-109 12-94 (105)
10 1x5u_A Splicing factor 3B subu 99.8 1E-19 3.5E-24 138.2 12.6 83 27-109 11-94 (105)
11 3s7r_A Heterogeneous nuclear r 99.8 6.5E-20 2.2E-24 134.7 10.8 82 25-106 5-86 (87)
12 1wi8_A EIF-4B, eukaryotic tran 99.8 9.1E-20 3.1E-24 138.6 12.0 84 27-112 11-96 (104)
13 2e5h_A Zinc finger CCHC-type a 99.8 6.1E-20 2.1E-24 136.6 10.8 81 27-107 12-93 (94)
14 2dgs_A DAZ-associated protein 99.8 1.4E-19 4.6E-24 136.3 12.5 82 28-110 7-89 (99)
15 2khc_A Testis-specific RNP-typ 99.8 1.1E-19 3.8E-24 141.0 12.1 84 24-107 33-117 (118)
16 2rs2_A Musashi-1, RNA-binding 99.8 5.5E-20 1.9E-24 141.6 10.1 87 25-111 19-105 (109)
17 1x5s_A Cold-inducible RNA-bind 99.8 8.6E-20 3E-24 138.0 10.8 83 29-111 10-93 (102)
18 2cph_A RNA binding motif prote 99.8 1.4E-19 4.9E-24 137.8 12.0 85 26-110 10-97 (107)
19 2cqg_A TDP-43, TAR DNA-binding 99.8 2.8E-19 9.6E-24 135.5 13.5 85 25-110 9-93 (103)
20 1x4a_A Splicing factor, argini 99.8 2.6E-19 8.8E-24 137.2 13.1 83 25-110 16-99 (109)
21 2dnz_A Probable RNA-binding pr 99.8 1.8E-19 6.1E-24 134.4 11.7 82 29-110 3-85 (95)
22 2cqc_A Arginine/serine-rich sp 99.8 1.3E-19 4.4E-24 135.0 10.9 81 27-107 11-92 (95)
23 2cqb_A Peptidyl-prolyl CIS-tra 99.8 5.4E-20 1.8E-24 139.1 8.8 82 29-110 10-92 (102)
24 2kxn_B Transformer-2 protein h 99.8 7.1E-20 2.4E-24 145.4 9.8 87 23-109 38-125 (129)
25 2m2b_A RNA-binding protein 10; 99.8 6.1E-20 2.1E-24 145.6 9.4 84 25-109 17-107 (131)
26 2dnm_A SRP46 splicing factor; 99.8 1E-19 3.5E-24 137.9 10.2 85 26-110 8-93 (103)
27 2d9p_A Polyadenylate-binding p 99.8 2.3E-19 7.8E-24 136.0 12.1 83 26-110 10-93 (103)
28 1whw_A Hypothetical protein ri 99.8 2.1E-19 7.3E-24 135.1 11.7 83 28-110 5-88 (99)
29 1u6f_A Tcubp1, RNA-binding pro 99.8 2.2E-19 7.4E-24 143.2 12.1 86 26-111 37-123 (139)
30 1x4h_A RNA-binding protein 28; 99.8 2.2E-19 7.4E-24 137.6 11.6 85 26-110 10-101 (111)
31 2dgp_A Bruno-like 4, RNA bindi 99.8 1.3E-19 4.6E-24 137.8 9.8 84 27-110 9-96 (106)
32 2cqp_A RNA-binding protein 12; 99.8 1E-19 3.5E-24 136.5 9.0 83 27-109 11-94 (98)
33 2do0_A HnRNP M, heterogeneous 99.8 8.7E-19 3E-23 135.0 14.4 82 27-109 11-93 (114)
34 2dnh_A Bruno-like 5, RNA bindi 99.8 4.8E-19 1.6E-23 134.5 12.7 82 28-110 12-97 (105)
35 2lxi_A RNA-binding protein 10; 99.8 4E-20 1.4E-24 138.0 6.5 78 32-109 2-82 (91)
36 4f25_A Polyadenylate-binding p 99.8 1.7E-19 5.8E-24 140.0 10.0 79 30-110 4-83 (115)
37 2cqi_A Nucleolysin TIAR; RNA r 99.8 4.5E-19 1.5E-23 134.4 12.0 84 26-111 10-94 (103)
38 1x4b_A Heterogeneous nuclear r 99.8 2.2E-19 7.4E-24 139.1 10.4 83 27-110 23-106 (116)
39 2dhg_A TRNA selenocysteine ass 99.8 5.4E-19 1.8E-23 134.0 12.4 83 27-110 5-90 (104)
40 3p5t_L Cleavage and polyadenyl 99.8 4.8E-20 1.6E-24 136.8 6.4 78 32-109 2-82 (90)
41 2cq3_A RNA-binding protein 9; 99.8 7.9E-19 2.7E-23 133.0 13.2 84 26-111 10-94 (103)
42 2div_A TRNA selenocysteine ass 99.8 4E-19 1.4E-23 133.6 11.4 73 29-101 7-81 (99)
43 3bs9_A Nucleolysin TIA-1 isofo 99.8 2.8E-19 9.7E-24 131.0 10.2 80 29-108 4-84 (87)
44 2ek1_A RNA-binding protein 12; 99.8 5.4E-20 1.8E-24 137.2 6.3 80 28-107 12-92 (95)
45 1x5t_A Splicing factor 3B subu 99.8 2.9E-19 1E-23 133.4 10.2 81 30-110 4-86 (96)
46 2cpf_A RNA binding motif prote 99.8 3.6E-19 1.2E-23 133.6 10.7 82 29-110 3-88 (98)
47 3md1_A Nuclear and cytoplasmic 99.8 4.2E-19 1.4E-23 129.0 10.7 78 32-109 2-80 (83)
48 2lkz_A RNA-binding protein 5; 99.8 5.6E-20 1.9E-24 138.7 6.2 82 27-108 5-93 (95)
49 2cpe_A RNA-binding protein EWS 99.8 3.4E-19 1.2E-23 137.2 10.7 85 26-110 10-103 (113)
50 2ywk_A Putative RNA-binding pr 99.8 2.6E-19 8.7E-24 133.5 9.6 81 26-107 11-92 (95)
51 2jrs_A RNA-binding protein 39; 99.8 4.5E-19 1.5E-23 136.3 11.3 89 21-109 16-105 (108)
52 2cq4_A RNA binding motif prote 99.8 1.2E-19 4.3E-24 140.0 8.0 83 26-109 20-103 (114)
53 1p27_B RNA-binding protein 8A; 99.8 4.6E-19 1.6E-23 134.8 10.5 83 27-109 19-102 (106)
54 1wel_A RNA-binding protein 12; 99.8 2.2E-19 7.6E-24 141.0 8.9 83 25-108 19-102 (124)
55 3mdf_A Peptidyl-prolyl CIS-tra 99.8 3.5E-19 1.2E-23 129.9 9.3 80 28-107 4-84 (85)
56 3n9u_C Cleavage and polyadenyl 99.8 4.5E-19 1.5E-23 145.3 10.8 81 28-108 52-135 (156)
57 3ns6_A Eukaryotic translation 99.8 1.5E-19 5.1E-24 137.0 7.2 81 28-108 3-91 (100)
58 2la6_A RNA-binding protein FUS 99.8 7.9E-19 2.7E-23 132.2 10.9 82 26-107 8-98 (99)
59 2fy1_A RNA-binding motif prote 99.8 1.8E-18 6.1E-23 134.6 12.9 83 27-110 3-86 (116)
60 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.3E-18 4.6E-23 141.5 12.7 85 27-111 35-120 (156)
61 2db1_A Heterogeneous nuclear r 99.8 4.1E-19 1.4E-23 138.6 9.0 79 27-107 13-95 (118)
62 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.2E-18 4.1E-23 138.5 11.7 80 27-106 59-139 (140)
63 2x1f_A MRNA 3'-END-processing 99.8 7.6E-19 2.6E-23 131.6 9.7 79 31-109 2-81 (96)
64 1p1t_A Cleavage stimulation fa 99.8 2.3E-19 8E-24 135.9 6.9 86 25-110 2-88 (104)
65 1wg5_A Heterogeneous nuclear r 99.8 2.3E-18 7.8E-23 131.2 12.5 79 28-108 12-92 (104)
66 2dgv_A HnRNP M, heterogeneous 99.8 1.9E-18 6.4E-23 128.0 11.7 81 28-110 5-86 (92)
67 1oo0_B CG8781-PA, drosophila Y 99.8 6.9E-19 2.3E-23 134.9 9.6 84 26-109 21-105 (110)
68 2fc9_A NCL protein; structure 99.8 1.3E-18 4.3E-23 131.4 10.8 80 27-110 11-91 (101)
69 2cpy_A RNA-binding protein 12; 99.8 4.9E-19 1.7E-23 137.1 8.5 80 27-108 11-92 (114)
70 2cpi_A CCR4-NOT transcription 99.8 6.8E-19 2.3E-23 135.7 9.3 82 28-109 12-100 (111)
71 2lea_A Serine/arginine-rich sp 99.8 4.6E-19 1.6E-23 141.7 8.5 89 22-110 38-127 (135)
72 1s79_A Lupus LA protein; RRM, 99.8 8.6E-19 2.9E-23 134.0 9.6 80 27-108 7-87 (103)
73 3ulh_A THO complex subunit 4; 99.8 1.5E-18 5E-23 132.2 10.9 82 26-108 24-106 (107)
74 3ucg_A Polyadenylate-binding p 99.8 1.4E-18 4.7E-23 127.8 10.2 78 30-108 5-83 (89)
75 1wez_A HnRNP H', FTP-3, hetero 99.8 1.7E-18 5.8E-23 131.9 10.9 79 28-109 12-91 (102)
76 1uaw_A Mouse-musashi-1; RNP-ty 99.8 3E-19 1E-23 127.9 6.3 76 32-107 1-76 (77)
77 1x4e_A RNA binding motif, sing 99.8 3E-19 1E-23 130.6 6.4 77 29-105 3-80 (85)
78 3ex7_B RNA-binding protein 8A; 99.8 9.3E-19 3.2E-23 137.3 9.7 88 25-112 16-104 (126)
79 4a8x_A RNA-binding protein wit 99.8 1E-18 3.5E-23 128.1 8.6 80 30-109 3-84 (88)
80 1x5o_A RNA binding motif, sing 99.8 4.8E-18 1.6E-22 130.9 12.6 75 25-100 19-94 (114)
81 2mss_A Protein (musashi1); RNA 99.8 7.1E-19 2.4E-23 125.6 7.1 73 33-106 1-74 (75)
82 3q2s_C Cleavage and polyadenyl 99.8 1.3E-18 4.3E-23 151.1 10.0 79 30-108 67-148 (229)
83 2dgw_A Probable RNA-binding pr 99.8 5E-18 1.7E-22 125.7 11.3 80 28-110 7-87 (91)
84 2dgx_A KIAA0430 protein; RRM d 99.8 2.4E-18 8.3E-23 129.1 9.7 77 30-109 8-89 (96)
85 2jwn_A Embryonic polyadenylate 99.8 3.9E-18 1.3E-22 133.4 11.2 80 29-109 34-114 (124)
86 2cq1_A PTB-like protein L; RRM 99.8 4.9E-18 1.7E-22 129.5 11.4 77 27-109 11-90 (101)
87 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.1E-18 3.7E-23 132.0 7.5 82 26-109 14-97 (100)
88 2fc8_A NCL protein; structure 99.8 4.7E-18 1.6E-22 128.3 10.8 82 27-111 11-93 (102)
89 2kn4_A Immunoglobulin G-bindin 99.8 3.2E-18 1.1E-22 139.2 10.6 85 26-110 65-150 (158)
90 1sjq_A Polypyrimidine tract-bi 99.8 3.2E-18 1.1E-22 131.5 9.5 78 26-109 11-91 (105)
91 2kt5_A RNA and export factor-b 99.8 1.3E-17 4.3E-22 130.7 13.0 82 27-109 31-113 (124)
92 2dis_A Unnamed protein product 99.8 5.7E-18 1.9E-22 129.4 10.7 81 30-110 7-92 (109)
93 1iqt_A AUF1, heterogeneous nuc 99.7 1E-18 3.5E-23 124.6 5.8 74 33-106 1-74 (75)
94 2dnn_A RNA-binding protein 12; 99.7 2.7E-18 9.1E-23 132.7 8.3 77 28-107 13-90 (109)
95 2hgl_A HNRPF protein, heteroge 99.7 2.8E-18 9.6E-23 137.7 8.6 79 27-107 40-122 (136)
96 2ki2_A SS-DNA binding protein 99.7 8.3E-19 2.8E-23 129.6 5.1 77 32-109 2-79 (90)
97 1x4c_A Splicing factor, argini 99.7 1.3E-17 4.5E-22 127.7 11.8 76 28-110 12-93 (108)
98 1wex_A Hypothetical protein (r 99.7 1E-17 3.5E-22 128.3 11.1 76 28-109 12-90 (104)
99 1wf1_A RNA-binding protein RAL 99.7 9.7E-18 3.3E-22 128.6 11.0 74 28-109 24-99 (110)
100 2krb_A Eukaryotic translation 99.7 4.1E-18 1.4E-22 123.7 8.3 71 32-104 2-80 (81)
101 2err_A Ataxin-2-binding protei 99.7 3.3E-18 1.1E-22 131.5 8.2 85 23-109 21-106 (109)
102 1fj7_A Nucleolin RBD1, protein 99.7 8.6E-19 2.9E-23 132.3 4.6 81 27-109 13-94 (101)
103 1x4d_A Matrin 3; structural ge 99.7 6.7E-18 2.3E-22 129.0 9.5 75 29-109 13-91 (102)
104 2dha_A FLJ20171 protein; RRM d 99.7 1.5E-18 5.2E-23 136.9 5.2 79 28-107 20-102 (123)
105 2lmi_A GRSF-1, G-rich sequence 99.7 3.8E-18 1.3E-22 130.6 6.9 79 27-107 7-89 (107)
106 2xs2_A Deleted in azoospermia- 99.7 4.5E-18 1.5E-22 128.6 7.1 83 25-109 3-85 (102)
107 2hgm_A HNRPF protein, heteroge 99.7 8.8E-18 3E-22 133.1 9.0 79 27-107 38-118 (126)
108 1l3k_A Heterogeneous nuclear r 99.7 1.6E-17 5.6E-22 138.1 11.1 86 25-110 7-92 (196)
109 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.7E-17 5.7E-22 136.5 10.7 87 25-111 66-153 (165)
110 1why_A Hypothetical protein ri 99.7 2.8E-17 9.7E-22 123.1 11.1 76 28-109 14-92 (97)
111 2nlw_A Eukaryotic translation 99.7 9.5E-18 3.3E-22 128.0 8.5 81 26-108 10-98 (105)
112 4f02_A Polyadenylate-binding p 99.7 1.5E-17 5.2E-22 141.8 10.6 97 29-125 13-114 (213)
113 2cpj_A Non-POU domain-containi 99.7 2.2E-17 7.5E-22 124.2 10.0 76 28-109 12-88 (99)
114 2hgn_A Heterogeneous nuclear r 99.7 3E-18 1E-22 138.0 5.5 80 26-108 41-121 (139)
115 2lcw_A RNA-binding protein FUS 99.6 4.3E-19 1.5E-23 137.5 0.0 84 27-110 3-95 (116)
116 1x4f_A Matrin 3; structural ge 99.7 1.7E-17 5.9E-22 128.8 8.9 76 28-109 22-101 (112)
117 2cpx_A Hypothetical protein FL 99.7 1.2E-17 4E-22 128.8 8.0 86 26-111 20-106 (115)
118 2e5j_A Methenyltetrahydrofolat 99.7 2.9E-17 1E-21 123.2 9.9 78 27-109 15-93 (97)
119 2dnq_A RNA-binding protein 4B; 99.7 4.7E-17 1.6E-21 120.3 10.9 75 28-110 5-80 (90)
120 2jvr_A Nucleolar protein 3; RN 99.7 7.9E-18 2.7E-22 130.5 6.9 78 28-109 25-104 (111)
121 2jvo_A Nucleolar protein 3; nu 99.7 1.7E-17 5.9E-22 127.5 8.7 79 23-109 23-102 (108)
122 2ytc_A PRE-mRNA-splicing facto 99.7 4.8E-17 1.7E-21 118.6 10.7 76 25-106 6-83 (85)
123 2j8a_A Histone-lysine N-methyl 99.7 1.3E-17 4.5E-22 131.9 7.2 78 32-109 3-95 (136)
124 2wbr_A GW182, gawky, LD47780P; 99.7 1.4E-17 4.9E-22 123.5 6.9 71 31-107 7-78 (89)
125 2ad9_A Polypyrimidine tract-bi 99.7 3.5E-17 1.2E-21 128.4 9.4 78 26-109 26-106 (119)
126 2a3j_A U1 small nuclear ribonu 99.7 4.6E-17 1.6E-21 129.0 10.1 80 28-110 26-110 (127)
127 1x4g_A Nucleolysin TIAR; struc 99.7 5.7E-17 2E-21 124.1 10.1 78 27-110 21-99 (109)
128 2dgt_A RNA-binding protein 30; 99.7 8.4E-17 2.9E-21 119.4 10.3 76 27-110 6-82 (92)
129 3r27_A HnRNP L, heterogeneous 99.7 6.6E-17 2.2E-21 123.0 9.5 77 26-108 16-95 (100)
130 1x5p_A Negative elongation fac 99.7 2.3E-16 8E-21 118.2 12.4 76 27-110 11-87 (97)
131 2hvz_A Splicing factor, argini 99.7 4.1E-17 1.4E-21 123.0 8.2 75 32-111 1-76 (101)
132 2dgu_A Heterogeneous nuclear r 99.7 1.3E-16 4.4E-21 120.9 10.8 76 28-111 8-84 (103)
133 2e5g_A U6 snRNA-specific termi 99.7 2.1E-16 7.3E-21 117.7 11.6 73 30-108 7-80 (94)
134 2f3j_A RNA and export factor b 99.7 6.9E-17 2.4E-21 134.8 9.9 81 28-109 85-166 (177)
135 2la4_A Nuclear and cytoplasmic 99.7 5.4E-17 1.8E-21 122.4 8.3 74 28-107 24-98 (101)
136 1fxl_A Paraneoplastic encephal 99.7 1.4E-16 4.8E-21 128.6 10.8 94 31-124 2-98 (167)
137 2dnl_A Cytoplasmic polyadenyla 99.7 4.1E-17 1.4E-21 126.2 7.2 74 30-105 7-83 (114)
138 2e44_A Insulin-like growth fac 99.7 1.3E-16 4.6E-21 119.0 9.2 77 29-109 13-91 (96)
139 1b7f_A Protein (SXL-lethal pro 99.7 1.1E-16 3.7E-21 129.8 9.4 95 30-124 2-99 (168)
140 2dnp_A RNA-binding protein 14; 99.7 1.6E-16 5.4E-21 117.4 9.5 76 27-110 5-81 (90)
141 3lqv_A PRE-mRNA branch site pr 99.7 1.5E-16 5.2E-21 122.7 9.7 78 29-109 6-84 (115)
142 1fjc_A Nucleolin RBD2, protein 99.7 1E-16 3.4E-21 119.6 8.4 78 27-109 12-90 (96)
143 1l3k_A Heterogeneous nuclear r 99.7 2.3E-16 8E-21 131.1 11.4 85 28-112 101-185 (196)
144 2kvi_A Nuclear polyadenylated 99.7 1.5E-16 5.1E-21 119.1 8.2 77 27-111 6-84 (96)
145 1nu4_A U1A RNA binding domain; 99.7 9.3E-17 3.2E-21 119.9 6.9 79 28-109 5-88 (97)
146 2i2y_A Fusion protein consists 99.7 1.7E-16 5.7E-21 128.2 8.8 80 25-109 67-147 (150)
147 2xnq_A Nuclear polyadenylated 99.7 3.3E-16 1.1E-20 117.9 9.8 76 26-109 17-94 (97)
148 3md3_A Nuclear and cytoplasmic 99.7 4.9E-16 1.7E-20 125.3 11.4 81 27-107 83-164 (166)
149 2qfj_A FBP-interacting repress 99.7 4.9E-16 1.7E-20 131.1 11.5 82 29-110 123-205 (216)
150 3pgw_S U1-70K; protein-RNA com 99.7 4.8E-16 1.6E-20 146.8 12.5 83 28-110 99-182 (437)
151 2qfj_A FBP-interacting repress 99.7 2.5E-16 8.4E-21 132.9 9.2 81 28-108 25-106 (216)
152 3beg_B Splicing factor, argini 99.7 1.4E-16 4.7E-21 123.6 6.9 67 28-101 13-80 (115)
153 1whx_A Hypothetical protein ri 99.7 2.2E-16 7.4E-21 121.8 7.7 77 28-110 7-84 (111)
154 2cpd_A Apobec-1 stimulating pr 99.6 9.2E-16 3.2E-20 115.2 11.0 77 26-110 10-89 (99)
155 2cqh_A IGF-II mRNA-binding pro 99.6 2.3E-16 7.8E-21 117.1 7.6 75 29-110 6-83 (93)
156 3d2w_A TAR DNA-binding protein 99.6 3.2E-16 1.1E-20 116.2 8.2 76 27-108 7-82 (89)
157 2yh0_A Splicing factor U2AF 65 99.6 9.4E-16 3.2E-20 127.6 11.8 83 27-109 110-193 (198)
158 3nmr_A Cugbp ELAV-like family 99.6 4E-16 1.4E-20 127.1 9.2 96 30-125 2-106 (175)
159 2g4b_A Splicing factor U2AF 65 99.6 5.6E-16 1.9E-20 126.2 9.9 79 29-107 92-171 (172)
160 2cjk_A Nuclear polyadenylated 99.6 4.2E-16 1.4E-20 126.3 8.9 94 30-124 2-97 (167)
161 1sjr_A Polypyrimidine tract-bi 99.6 1.1E-15 3.7E-20 126.1 11.1 78 27-108 42-122 (164)
162 2voo_A Lupus LA protein; RNA-b 99.6 1.1E-15 3.9E-20 129.1 11.2 79 30-109 108-186 (193)
163 1wf0_A TDP-43, TAR DNA-binding 99.6 2.9E-16 9.8E-21 115.5 6.5 73 30-108 4-76 (88)
164 1wg1_A KIAA1579 protein, homol 99.6 3.3E-16 1.1E-20 115.4 6.8 72 30-108 4-76 (88)
165 1fxl_A Paraneoplastic encephal 99.6 1.1E-15 3.7E-20 123.3 10.1 80 28-107 85-165 (167)
166 4f02_A Polyadenylate-binding p 99.6 6.6E-16 2.2E-20 131.6 9.1 78 30-109 102-180 (213)
167 3egn_A RNA-binding protein 40; 99.6 1.1E-16 3.8E-21 128.3 3.7 83 28-110 42-130 (143)
168 2cjk_A Nuclear polyadenylated 99.6 5.5E-16 1.9E-20 125.6 7.7 78 30-108 86-164 (167)
169 1b7f_A Protein (SXL-lethal pro 99.6 2.2E-15 7.4E-20 122.1 11.2 79 27-105 85-166 (168)
170 2hzc_A Splicing factor U2AF 65 99.6 1.2E-15 4.1E-20 111.5 8.1 70 29-105 4-85 (87)
171 3md3_A Nuclear and cytoplasmic 99.6 1.4E-15 4.9E-20 122.5 9.3 78 32-110 1-79 (166)
172 2cq2_A Hypothetical protein LO 99.6 1.4E-15 4.9E-20 118.3 7.9 64 28-97 22-88 (114)
173 2e5i_A Heterogeneous nuclear r 99.6 1.2E-14 4E-19 114.8 12.9 67 28-100 22-90 (124)
174 3nmr_A Cugbp ELAV-like family 99.6 7.4E-15 2.5E-19 119.5 9.9 78 28-106 92-173 (175)
175 3pgw_A U1-A; protein-RNA compl 99.6 7.7E-15 2.6E-19 129.3 10.7 80 27-109 5-89 (282)
176 3tyt_A Heterogeneous nuclear r 99.6 6.6E-15 2.3E-19 125.4 9.7 74 30-108 3-78 (205)
177 2dit_A HIV TAT specific factor 99.6 2.7E-14 9.2E-19 110.0 12.1 80 27-110 11-102 (112)
178 2bz2_A Negative elongation fac 99.6 5.1E-15 1.8E-19 116.0 8.2 75 27-109 35-110 (121)
179 3zzy_A Polypyrimidine tract-bi 99.6 1.4E-14 4.7E-19 115.2 10.6 79 26-109 23-103 (130)
180 2pe8_A Splicing factor 45; RRM 99.6 1.8E-14 6.2E-19 110.3 9.8 80 29-108 6-92 (105)
181 3smz_A Protein raver-1, ribonu 99.5 2.3E-14 8E-19 126.3 10.4 96 30-125 94-195 (284)
182 2diu_A KIAA0430 protein; struc 99.5 2.7E-14 9.1E-19 107.0 8.6 71 30-110 8-84 (96)
183 1fje_B Nucleolin RBD12, protei 99.5 2.4E-15 8.2E-20 123.1 2.7 97 27-125 9-110 (175)
184 1fje_B Nucleolin RBD12, protei 99.5 2.7E-14 9.2E-19 116.8 8.7 77 27-108 95-172 (175)
185 3u1l_A PRE-mRNA-splicing facto 99.5 2.3E-14 7.9E-19 125.1 8.2 76 28-109 131-228 (240)
186 2adc_A Polypyrimidine tract-bi 99.5 4.7E-14 1.6E-18 121.3 9.3 77 28-109 31-109 (229)
187 3pgw_A U1-A; protein-RNA compl 99.5 8.5E-14 2.9E-18 122.6 10.8 76 27-107 203-280 (282)
188 2ghp_A U4/U6 snRNA-associated 99.5 4E-14 1.4E-18 125.3 8.4 81 28-109 207-290 (292)
189 3smz_A Protein raver-1, ribonu 99.5 8.1E-14 2.8E-18 122.9 9.7 83 27-110 180-264 (284)
190 2ghp_A U4/U6 snRNA-associated 99.5 1.2E-13 4.2E-18 122.1 9.8 93 25-125 35-128 (292)
191 2g4b_A Splicing factor U2AF 65 99.5 1.4E-13 4.7E-18 111.9 8.8 89 30-125 3-105 (172)
192 1qm9_A Polypyrimidine tract-bi 99.5 6.1E-14 2.1E-18 117.1 6.6 74 31-109 3-78 (198)
193 3tyt_A Heterogeneous nuclear r 99.5 4.6E-14 1.6E-18 120.2 5.9 70 30-101 122-194 (205)
194 1jmt_A Splicing factor U2AF 35 99.5 3.5E-14 1.2E-18 108.4 4.5 70 36-106 20-102 (104)
195 3sde_A Paraspeckle component 1 99.5 1.4E-13 4.9E-18 120.6 8.9 78 30-108 95-177 (261)
196 3sde_A Paraspeckle component 1 99.4 1.5E-13 5E-18 120.5 8.0 88 28-125 19-107 (261)
197 3v4m_A Splicing factor U2AF 65 99.4 2.5E-13 8.5E-18 103.9 7.9 80 29-108 3-95 (105)
198 2d9o_A DNAJ (HSP40) homolog, s 99.4 4E-12 1.4E-16 96.4 12.8 63 41-109 27-89 (100)
199 3ue2_A Poly(U)-binding-splicin 99.4 8.3E-13 2.9E-17 103.2 8.5 79 30-108 19-107 (118)
200 2yh0_A Splicing factor U2AF 65 99.4 5.4E-13 1.8E-17 110.8 7.9 72 30-108 3-86 (198)
201 1qm9_A Polypyrimidine tract-bi 99.4 8.4E-13 2.9E-17 110.2 8.9 75 29-108 118-195 (198)
202 2adc_A Polypyrimidine tract-bi 99.4 1.3E-12 4.3E-17 112.3 9.3 75 29-108 149-226 (229)
203 3tht_A Alkylated DNA repair pr 99.3 3.3E-12 1.1E-16 116.9 8.2 65 27-97 14-81 (345)
204 1owx_A Lupus LA protein, SS-B, 99.1 1.3E-10 4.4E-15 91.0 8.8 78 24-107 11-93 (121)
205 3s6e_A RNA-binding protein 39; 99.1 4.4E-11 1.5E-15 92.8 5.5 73 31-107 7-90 (114)
206 2dnr_A Synaptojanin-1; RRM dom 98.9 2.4E-09 8.3E-14 79.3 7.5 70 31-109 7-85 (91)
207 3dxb_A Thioredoxin N-terminall 98.9 3.9E-09 1.3E-13 89.9 8.0 66 43-108 141-211 (222)
208 1ufw_A Synaptojanin 2; RNP dom 98.8 1.1E-09 3.8E-14 81.6 2.9 70 30-108 14-93 (95)
209 2dhx_A Poly (ADP-ribose) polym 98.2 5.4E-05 1.8E-09 57.0 13.2 84 32-125 9-97 (104)
210 2l9w_A U4/U6 snRNA-associated- 98.1 5.5E-06 1.9E-10 63.2 6.6 74 26-105 16-95 (117)
211 1whv_A Poly(A)-specific ribonu 97.4 0.00072 2.4E-08 50.4 8.0 56 30-93 14-69 (100)
212 1wwh_A Nucleoporin 35, nucleop 97.2 0.0014 4.7E-08 50.7 8.3 67 27-100 20-86 (119)
213 1wey_A Calcipressin 1; structu 96.9 0.0023 7.8E-08 48.2 6.7 70 30-105 4-79 (104)
214 3ctr_A Poly(A)-specific ribonu 96.7 0.0013 4.6E-08 49.0 4.1 53 33-93 7-59 (101)
215 1uw4_A UPF3X; nonsense mediate 96.5 0.0072 2.5E-07 44.4 6.6 63 32-94 2-66 (91)
216 2kn4_A Immunoglobulin G-bindin 96.2 0.0032 1.1E-07 49.9 3.5 39 60-100 2-42 (158)
217 3pq1_A Poly(A) RNA polymerase; 96.0 0.003 1E-07 59.6 2.9 56 32-93 54-109 (464)
218 3p3d_A Nucleoporin 53; structu 95.4 0.02 7E-07 44.8 5.1 77 31-108 7-97 (132)
219 2i2y_A Fusion protein consists 94.0 0.028 9.5E-07 44.1 2.8 36 70-106 10-47 (150)
220 2l08_A Regulator of nonsense t 93.2 0.098 3.4E-06 38.7 4.3 70 31-100 9-82 (97)
221 3d45_A Poly(A)-specific ribonu 89.7 0.51 1.7E-05 44.9 6.3 55 31-94 440-494 (507)
222 2crl_A Copper chaperone for su 66.1 28 0.00097 24.5 7.5 56 32-94 21-77 (98)
223 4f25_A Polyadenylate-binding p 57.7 2.2 7.4E-05 31.5 0.0 20 28-47 94-113 (115)
224 3lpe_A Putative transcription 44.4 59 0.002 23.0 6.0 46 44-94 21-71 (92)
225 2g0c_A ATP-dependent RNA helic 42.2 55 0.0019 21.8 5.4 56 42-106 12-73 (76)
226 4e8u_A Putative uncharacterize 39.7 1E+02 0.0036 24.7 7.3 65 33-100 14-91 (172)
227 3fry_A Probable copper-exporti 37.9 79 0.0027 20.2 5.9 57 31-94 6-62 (73)
228 3ts2_A Protein LIN-28 homolog 36.0 5.9 0.0002 31.2 -0.7 28 46-81 2-29 (148)
229 2i9x_A Putative septation prot 35.3 52 0.0018 23.4 4.4 26 57-82 5-30 (87)
230 3mfb_A Uncharacterized protein 31.8 74 0.0025 25.2 5.2 36 43-78 3-41 (157)
231 2ia9_A Putative septation prot 31.2 64 0.0022 23.6 4.4 26 57-82 5-30 (100)
232 2i9z_A Putative septation prot 29.7 71 0.0024 23.6 4.4 26 57-82 5-30 (105)
233 2yua_A Williams-beuren syndrom 27.8 24 0.00083 25.2 1.6 20 36-55 22-41 (99)
234 1i4w_A Mitochondrial replicati 27.4 62 0.0021 28.9 4.5 52 32-100 143-203 (353)
235 3h7h_B Transcription elongatio 26.1 1.6E+02 0.0055 21.4 5.9 35 57-96 40-74 (106)
236 2lfv_A Protein DAMX; cell divi 31.1 15 0.00051 27.2 0.0 59 38-97 29-88 (106)
237 2lea_A Serine/arginine-rich sp 25.1 17 0.00057 27.4 0.2 51 75-125 6-58 (135)
238 2e5p_A Protein PHF1, PHD finge 25.1 33 0.0011 23.2 1.7 11 73-83 37-47 (68)
239 4bby_A Alkyldihydroxyacetoneph 24.7 54 0.0019 31.7 3.9 55 38-93 350-408 (658)
240 3swz_A Steroid 17-alpha-hydrox 23.1 1.1E+02 0.0039 27.2 5.6 59 33-100 16-78 (494)
241 3fut_A Dimethyladenosine trans 23.1 67 0.0023 27.4 3.8 34 32-66 111-144 (271)
242 2m0o_A PHD finger protein 1; t 22.6 39 0.0013 23.5 1.7 11 73-83 54-64 (79)
243 2kpo_A Rossmann 2X2 fold prote 22.2 1.1E+02 0.0038 21.5 4.0 50 43-104 33-83 (110)
244 3d53_A Inorganic pyrophosphata 21.4 1.2E+02 0.0041 24.3 4.7 36 46-92 133-168 (173)
245 3uzu_A Ribosomal RNA small sub 20.8 46 0.0016 28.5 2.3 35 32-66 115-149 (279)
No 1
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.85 E-value=1.1e-20 Score=146.15 Aligned_cols=87 Identities=25% Similarity=0.314 Sum_probs=79.1
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeee
Q 024889 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLR 102 (261)
Q Consensus 24 ~~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~ 102 (261)
....+...++|||+||++++++++|+++|++||.|++|+|++|+.++++||||||+|.+.++|++||+.|| ..|+|+.+
T Consensus 18 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 97 (115)
T 2cpz_A 18 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRL 97 (115)
T ss_dssp CCCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred cCcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34556677999999999999999999999999999999999999899999999999999999999999999 89999988
Q ss_pred eeeeecCC
Q 024889 103 PATLFSGS 110 (261)
Q Consensus 103 ~v~~~~~~ 110 (261)
+|++...+
T Consensus 98 ~V~~a~~~ 105 (115)
T 2cpz_A 98 KVQLKRSK 105 (115)
T ss_dssp EEECCCCS
T ss_pred EEEEcCCC
Confidence 87765543
No 2
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.85 E-value=3.5e-20 Score=143.24 Aligned_cols=87 Identities=33% Similarity=0.498 Sum_probs=79.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
.....++|||+||++++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.+| ..|+|+.+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 55677999999999999999999999999999999999999899999999999999999999999999 89999988888
Q ss_pred eecCCCCC
Q 024889 106 LFSGSTQA 113 (261)
Q Consensus 106 ~~~~~~~~ 113 (261)
+...+...
T Consensus 91 ~a~~~~~~ 98 (115)
T 2dgo_A 91 WATRKPPA 98 (115)
T ss_dssp ESSCCCCC
T ss_pred EccCCCCC
Confidence 76655443
No 3
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.84 E-value=8.1e-21 Score=144.07 Aligned_cols=78 Identities=27% Similarity=0.394 Sum_probs=73.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeee
Q 024889 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLF 107 (261)
Q Consensus 30 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~ 107 (261)
+.++|||+|||++++|++|+++|++||+|++|+|++|+.+|++||||||+|.+.++|++||+.+| ..|+|+.++|+++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45799999999999999999999999999999999999999999999999999999999999999 8999998877664
No 4
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=145.91 Aligned_cols=82 Identities=16% Similarity=0.218 Sum_probs=76.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATL 106 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~ 106 (261)
+...++|||+||+++++|++|+++|++||.|++|+|++|+.|+++||||||+|.+.++|++||+.|| ..|+|+.+.|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3456899999999999999999999999999999999999999999999999999999999999999 899999988877
Q ss_pred ecC
Q 024889 107 FSG 109 (261)
Q Consensus 107 ~~~ 109 (261)
...
T Consensus 83 a~~ 85 (110)
T 3s8s_A 83 DIK 85 (110)
T ss_dssp CST
T ss_pred CCC
Confidence 643
No 5
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=6.9e-20 Score=141.90 Aligned_cols=85 Identities=55% Similarity=0.942 Sum_probs=79.1
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCCCccCCeeeee
Q 024889 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRLRPA 104 (261)
Q Consensus 25 ~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n~~i~Gr~~~v 104 (261)
+..+...++|||+||+++++|++|+++|++||.|++|+|++++.++++||||||+|.+.++|++||+.++..|+|+.+.|
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V 90 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANV 90 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEE
Confidence 44677889999999999999999999999999999999999999999999999999999999999999998899998888
Q ss_pred eeecC
Q 024889 105 TLFSG 109 (261)
Q Consensus 105 ~~~~~ 109 (261)
++...
T Consensus 91 ~~a~~ 95 (116)
T 2cqd_A 91 NLAYL 95 (116)
T ss_dssp EESTT
T ss_pred EEccc
Confidence 77654
No 6
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.9e-20 Score=139.26 Aligned_cols=84 Identities=27% Similarity=0.370 Sum_probs=77.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
.....++|||+||++++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.+| ..|+|+.+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45667999999999999999999999999999999999999899999999999999999999999999 89999988887
Q ss_pred eecCC
Q 024889 106 LFSGS 110 (261)
Q Consensus 106 ~~~~~ 110 (261)
+...+
T Consensus 91 ~a~~~ 95 (103)
T 2cq0_A 91 WAKPS 95 (103)
T ss_dssp ESSCC
T ss_pred ECCCC
Confidence 76543
No 7
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=9.1e-20 Score=138.32 Aligned_cols=84 Identities=20% Similarity=0.380 Sum_probs=76.4
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeee
Q 024889 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPA 104 (261)
Q Consensus 26 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v 104 (261)
..+...++|||+||++++++++|+++|++|| |++|+|++|+.+++++|||||+|.+.++|++|| .+| ..|+|+.+.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 3556679999999999999999999999996 999999999999999999999999999999999 788 8999998888
Q ss_pred eeecCCC
Q 024889 105 TLFSGST 111 (261)
Q Consensus 105 ~~~~~~~ 111 (261)
++...+.
T Consensus 88 ~~a~~~~ 94 (103)
T 2dng_A 88 DIAEGRK 94 (103)
T ss_dssp EECCCCC
T ss_pred EEecCCC
Confidence 8765543
No 8
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=7.9e-20 Score=137.82 Aligned_cols=83 Identities=17% Similarity=0.355 Sum_probs=76.0
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeee
Q 024889 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPA 104 (261)
Q Consensus 26 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v 104 (261)
..+...++|||+||++++++++|+++|++||.|++|+|++++ +++++|||||+|.+.++|++||+.+| ..|+|+.+.|
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345667899999999999999999999999999999999998 89999999999999999999999988 8899998887
Q ss_pred eeecC
Q 024889 105 TLFSG 109 (261)
Q Consensus 105 ~~~~~ 109 (261)
.+...
T Consensus 91 ~~a~~ 95 (100)
T 2do4_A 91 AISNS 95 (100)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 76544
No 9
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=5.6e-20 Score=139.87 Aligned_cols=82 Identities=39% Similarity=0.781 Sum_probs=75.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
.+...++|||+||++++++++|+++|++||+|++|+|++++.++++||||||+|.+.++|++||+. + ..|+|+.+.|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 566789999999999999999999999999999999999999999999999999999999999999 7 89999987766
Q ss_pred eecC
Q 024889 106 LFSG 109 (261)
Q Consensus 106 ~~~~ 109 (261)
....
T Consensus 91 ~a~~ 94 (105)
T 2dh8_A 91 PCTP 94 (105)
T ss_dssp CSCC
T ss_pred EccC
Confidence 5543
No 10
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1e-19 Score=138.22 Aligned_cols=83 Identities=27% Similarity=0.344 Sum_probs=77.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
.....++|||+||++++++++|+++|++||.|++|+|++|+.++++||||||+|.+.++|++||+.|| ..|+|+.+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45567999999999999999999999999999999999999899999999999999999999999999 89999988877
Q ss_pred eecC
Q 024889 106 LFSG 109 (261)
Q Consensus 106 ~~~~ 109 (261)
+...
T Consensus 91 ~a~~ 94 (105)
T 1x5u_A 91 KASA 94 (105)
T ss_dssp ETTT
T ss_pred ECCC
Confidence 6544
No 11
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.82 E-value=6.5e-20 Score=134.74 Aligned_cols=82 Identities=32% Similarity=0.728 Sum_probs=74.6
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCCCccCCeeeee
Q 024889 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRLRPA 104 (261)
Q Consensus 25 ~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n~~i~Gr~~~v 104 (261)
+..+...++|||+|||+++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+.++..|+|+.+.|
T Consensus 5 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v 84 (87)
T 3s7r_A 5 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDP 84 (87)
T ss_dssp --CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEE
Confidence 34566789999999999999999999999999999999999999999999999999999999999988668899998776
Q ss_pred ee
Q 024889 105 TL 106 (261)
Q Consensus 105 ~~ 106 (261)
+.
T Consensus 85 ~~ 86 (87)
T 3s7r_A 85 KK 86 (87)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 12
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9.1e-20 Score=138.57 Aligned_cols=84 Identities=14% Similarity=0.335 Sum_probs=76.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCC-CCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNT-GRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPA 104 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~t-g~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v 104 (261)
.+...++|||+||++++++++|+++|++|| |++|+|++++.+ ++++|||||+|.+.++|++|| .+| ..|+|+.+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 455679999999999999999999999999 999999999988 999999999999999999999 888 8999998888
Q ss_pred eeecCCCC
Q 024889 105 TLFSGSTQ 112 (261)
Q Consensus 105 ~~~~~~~~ 112 (261)
++...+..
T Consensus 89 ~~a~~~~~ 96 (104)
T 1wi8_A 89 DVADQAQD 96 (104)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 87665433
No 13
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=6.1e-20 Score=136.65 Aligned_cols=81 Identities=22% Similarity=0.463 Sum_probs=75.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
.....++|||+|||+++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+.+| ..|+|+.++|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999 89999987776
Q ss_pred ee
Q 024889 106 LF 107 (261)
Q Consensus 106 ~~ 107 (261)
+.
T Consensus 92 ~a 93 (94)
T 2e5h_A 92 IA 93 (94)
T ss_dssp EC
T ss_pred ec
Confidence 53
No 14
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.4e-19 Score=136.28 Aligned_cols=82 Identities=28% Similarity=0.537 Sum_probs=75.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATL 106 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~ 106 (261)
+...++|||+||++++++++|+++|++||.|++|+|++|+.++++||||||+|.+.++|++||+ ++ ..|+|+.+.|+.
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 4456899999999999999999999999999999999999999999999999999999999999 77 899999888877
Q ss_pred ecCC
Q 024889 107 FSGS 110 (261)
Q Consensus 107 ~~~~ 110 (261)
...+
T Consensus 86 a~~~ 89 (99)
T 2dgs_A 86 AEPR 89 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 15
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.82 E-value=1.1e-19 Score=140.99 Aligned_cols=84 Identities=25% Similarity=0.341 Sum_probs=77.3
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeee
Q 024889 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLR 102 (261)
Q Consensus 24 ~~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~ 102 (261)
....+...++|||+||++++++++|+++|++||+|++|+|++|+.++++||||||+|.+.++|++||+.+| ..|+|+.+
T Consensus 33 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 112 (118)
T 2khc_A 33 KQIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRL 112 (118)
T ss_dssp SSCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34556778999999999999999999999999999999999999999999999999999999999999999 89999987
Q ss_pred eeeee
Q 024889 103 PATLF 107 (261)
Q Consensus 103 ~v~~~ 107 (261)
+|++.
T Consensus 113 ~V~~a 117 (118)
T 2khc_A 113 KVQLK 117 (118)
T ss_dssp CEEEC
T ss_pred EEEec
Confidence 77653
No 16
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.82 E-value=5.5e-20 Score=141.60 Aligned_cols=87 Identities=33% Similarity=0.600 Sum_probs=75.2
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCCCccCCeeeee
Q 024889 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRLRPA 104 (261)
Q Consensus 25 ~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n~~i~Gr~~~v 104 (261)
...+...++|||+||++++++++|+++|++||.|.+|+|++|+.++++||||||+|.+.++|++||+.++..|+|+.+.|
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V 98 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDP 98 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEE
Confidence 45566789999999999999999999999999999999999999999999999999999999999999888999998888
Q ss_pred eeecCCC
Q 024889 105 TLFSGST 111 (261)
Q Consensus 105 ~~~~~~~ 111 (261)
+....+.
T Consensus 99 ~~a~~~~ 105 (109)
T 2rs2_A 99 KVAFPRR 105 (109)
T ss_dssp EECCCCC
T ss_pred EEccCCC
Confidence 7765543
No 17
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=8.6e-20 Score=137.96 Aligned_cols=83 Identities=35% Similarity=0.634 Sum_probs=77.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeee
Q 024889 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLF 107 (261)
Q Consensus 29 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~ 107 (261)
...++|||+|||+++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.+| ..|+|+.+.|.+.
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 356899999999999999999999999999999999999999999999999999999999999999 8999999888887
Q ss_pred cCCC
Q 024889 108 SGST 111 (261)
Q Consensus 108 ~~~~ 111 (261)
....
T Consensus 90 ~~~~ 93 (102)
T 1x5s_A 90 GKSS 93 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 6543
No 18
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.4e-19 Score=137.75 Aligned_cols=85 Identities=22% Similarity=0.405 Sum_probs=77.7
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeec-CCCCCcceEEEEEEcCHHHHHHHHhcC-C-CccCCeee
Q 024889 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITD-KNTGRSKGYGFVTFREPEAARRACADP-T-PFIDGRLR 102 (261)
Q Consensus 26 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d-~~tg~skG~gFV~F~~~~~A~~Ai~~~-n-~~i~Gr~~ 102 (261)
..+...++|||+||++++++++|+++|++||.|++|+|+++ +.+++++|||||+|.+.++|++||+.+ | ..|+|+.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34567799999999999999999999999999999999999 788999999999999999999999999 7 89999988
Q ss_pred eeeeecCC
Q 024889 103 PATLFSGS 110 (261)
Q Consensus 103 ~v~~~~~~ 110 (261)
.|++...+
T Consensus 90 ~v~~a~~~ 97 (107)
T 2cph_A 90 VLEWADSE 97 (107)
T ss_dssp EEEECCCC
T ss_pred EEEeCCCC
Confidence 87776543
No 19
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.8e-19 Score=135.48 Aligned_cols=85 Identities=34% Similarity=0.584 Sum_probs=76.5
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCCCccCCeeeee
Q 024889 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRLRPA 104 (261)
Q Consensus 25 ~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n~~i~Gr~~~v 104 (261)
+..+...++|||+||++++++++|+++|++||.|++|+|++|+.++++||||||+|.+.++|++||+. .+.|+|+.+.|
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~v 87 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDC 87 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEEE
Confidence 34566778999999999999999999999999999999999999999999999999999999999995 47899998887
Q ss_pred eeecCC
Q 024889 105 TLFSGS 110 (261)
Q Consensus 105 ~~~~~~ 110 (261)
++...+
T Consensus 88 ~~a~~~ 93 (103)
T 2cqg_A 88 KLPNSK 93 (103)
T ss_dssp ECCCTT
T ss_pred EecCCC
Confidence 776554
No 20
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.6e-19 Score=137.18 Aligned_cols=83 Identities=17% Similarity=0.267 Sum_probs=73.7
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeee
Q 024889 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRP 103 (261)
Q Consensus 25 ~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~ 103 (261)
...+...++|||+||++++++++|+++|++||.|++|+|..+ +++||||||+|.+.++|++||+.+| ..|+|+.+.
T Consensus 16 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLR 92 (109)
T ss_dssp CCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 345667799999999999999999999999999999999665 6689999999999999999999998 899999888
Q ss_pred eeeecCC
Q 024889 104 ATLFSGS 110 (261)
Q Consensus 104 v~~~~~~ 110 (261)
|++....
T Consensus 93 V~~a~~~ 99 (109)
T 1x4a_A 93 VEFPRSG 99 (109)
T ss_dssp EECCCCC
T ss_pred EEEcccC
Confidence 7776543
No 21
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.8e-19 Score=134.36 Aligned_cols=82 Identities=35% Similarity=0.606 Sum_probs=76.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeee
Q 024889 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLF 107 (261)
Q Consensus 29 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~ 107 (261)
...++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.+| ..|+|+.++|++.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 356899999999999999999999999999999999999999999999999999999999999988 8999998888776
Q ss_pred cCC
Q 024889 108 SGS 110 (261)
Q Consensus 108 ~~~ 110 (261)
..+
T Consensus 83 ~~~ 85 (95)
T 2dnz_A 83 TER 85 (95)
T ss_dssp SCC
T ss_pred ccc
Confidence 554
No 22
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-19 Score=135.01 Aligned_cols=81 Identities=25% Similarity=0.370 Sum_probs=75.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
.....++|||+||++++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+.+| ..|+|+.+.|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45567999999999999999999999999999999999999999999999999999999999999998 89999987776
Q ss_pred ee
Q 024889 106 LF 107 (261)
Q Consensus 106 ~~ 107 (261)
+.
T Consensus 91 ~a 92 (95)
T 2cqc_A 91 GP 92 (95)
T ss_dssp CC
T ss_pred ec
Confidence 54
No 23
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5.4e-20 Score=139.10 Aligned_cols=82 Identities=29% Similarity=0.410 Sum_probs=76.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeee
Q 024889 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLF 107 (261)
Q Consensus 29 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~ 107 (261)
...++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.+| ..|+|+.+.|.+.
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 456899999999999999999999999999999999999999999999999999999999999988 8999998888776
Q ss_pred cCC
Q 024889 108 SGS 110 (261)
Q Consensus 108 ~~~ 110 (261)
...
T Consensus 90 ~~~ 92 (102)
T 2cqb_A 90 KPM 92 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
No 24
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.81 E-value=7.1e-20 Score=145.39 Aligned_cols=87 Identities=23% Similarity=0.348 Sum_probs=78.8
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCee
Q 024889 23 NSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRL 101 (261)
Q Consensus 23 ~~~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~ 101 (261)
.........++|||+||++++++++|+++|++||+|++|+|++|+.++++||||||+|.+.++|++||+.+| ..|+|+.
T Consensus 38 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~ 117 (129)
T 2kxn_B 38 GNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 117 (129)
T ss_dssp CCSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 345556778999999999999999999999999999999999999999999999999999999999999999 8999998
Q ss_pred eeeeeecC
Q 024889 102 RPATLFSG 109 (261)
Q Consensus 102 ~~v~~~~~ 109 (261)
++|++...
T Consensus 118 l~V~~a~~ 125 (129)
T 2kxn_B 118 IRVDFSIT 125 (129)
T ss_dssp CEESCCSS
T ss_pred EEEEEecC
Confidence 77766543
No 25
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.81 E-value=6.1e-20 Score=145.63 Aligned_cols=84 Identities=17% Similarity=0.271 Sum_probs=76.9
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEE--EEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-C----cc
Q 024889 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE--AVVITDKNTGRSKGYGFVTFREPEAARRACADPT-P----FI 97 (261)
Q Consensus 25 ~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~--v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~----~i 97 (261)
+..+...++|||+||+++++|++|+++|++||.|.. |+|++|+.|+++||||||+|.+. +|++||+.+| . .|
T Consensus 17 ~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 17 PSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 455677899999999999999999999999999977 99999999999999999999999 9999999999 7 89
Q ss_pred CCeeeeeeeecC
Q 024889 98 DGRLRPATLFSG 109 (261)
Q Consensus 98 ~Gr~~~v~~~~~ 109 (261)
+||.+.|++...
T Consensus 96 ~gr~l~V~~a~~ 107 (131)
T 2m2b_A 96 DGKTINVEFAKG 107 (131)
T ss_dssp GGCCCCCEECCC
T ss_pred CCEEEEEEECCC
Confidence 999888876644
No 26
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1e-19 Score=137.92 Aligned_cols=85 Identities=22% Similarity=0.367 Sum_probs=78.2
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeee
Q 024889 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPA 104 (261)
Q Consensus 26 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v 104 (261)
......++|||+||++++++++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|++||+.+| ..|+|+.+.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 345567999999999999999999999999999999999999999999999999999999999999988 8999998888
Q ss_pred eeecCC
Q 024889 105 TLFSGS 110 (261)
Q Consensus 105 ~~~~~~ 110 (261)
++....
T Consensus 88 ~~a~~~ 93 (103)
T 2dnm_A 88 QVARYG 93 (103)
T ss_dssp EECSSC
T ss_pred EECCcC
Confidence 776543
No 27
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.3e-19 Score=135.98 Aligned_cols=83 Identities=29% Similarity=0.476 Sum_probs=76.2
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeee
Q 024889 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPA 104 (261)
Q Consensus 26 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v 104 (261)
..+...++|||+||++++++++|+++|++||.|++|+|+++ +++++|||||+|.+.++|++||+.|| ..|+|+.+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34567899999999999999999999999999999999998 79999999999999999999999998 8999998888
Q ss_pred eeecCC
Q 024889 105 TLFSGS 110 (261)
Q Consensus 105 ~~~~~~ 110 (261)
++...+
T Consensus 88 ~~a~~~ 93 (103)
T 2d9p_A 88 ALAQRK 93 (103)
T ss_dssp EECSSC
T ss_pred EEeccc
Confidence 776554
No 28
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.1e-19 Score=135.07 Aligned_cols=83 Identities=27% Similarity=0.426 Sum_probs=76.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATL 106 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~ 106 (261)
....++|||+|||+++++++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|++||+.+| ..|+|+.+.|+.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3456899999999999999999999999999999999999899999999999999999999999999 899999888777
Q ss_pred ecCC
Q 024889 107 FSGS 110 (261)
Q Consensus 107 ~~~~ 110 (261)
...+
T Consensus 85 a~~~ 88 (99)
T 1whw_A 85 STIK 88 (99)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 6554
No 29
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.81 E-value=2.2e-19 Score=143.24 Aligned_cols=86 Identities=23% Similarity=0.365 Sum_probs=78.6
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeee
Q 024889 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPA 104 (261)
Q Consensus 26 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v 104 (261)
..+...++|||+||+++++|++|+++|++||+|++|+|++|+.++++||||||+|.+.++|++||+.+| ..|+|+.++|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345667999999999999999999999999999999999999999999999999999999999999999 8899998888
Q ss_pred eeecCCC
Q 024889 105 TLFSGST 111 (261)
Q Consensus 105 ~~~~~~~ 111 (261)
++...+.
T Consensus 117 ~~a~~~~ 123 (139)
T 1u6f_A 117 ALAASGH 123 (139)
T ss_dssp EESSCCC
T ss_pred EECCCCC
Confidence 7765543
No 30
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.2e-19 Score=137.62 Aligned_cols=85 Identities=27% Similarity=0.402 Sum_probs=76.6
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-------CccC
Q 024889 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-------PFID 98 (261)
Q Consensus 26 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-------~~i~ 98 (261)
......++|||+||++++++++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|++||+.+| ..|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 345667899999999999999999999999999999999999999999999999999999999999885 5789
Q ss_pred CeeeeeeeecCC
Q 024889 99 GRLRPATLFSGS 110 (261)
Q Consensus 99 Gr~~~v~~~~~~ 110 (261)
|+.+.|.+...+
T Consensus 90 g~~l~v~~a~~~ 101 (111)
T 1x4h_A 90 GRQLKVDLAVTR 101 (111)
T ss_dssp SCEEEEECCCCC
T ss_pred CEEEEEEECCCC
Confidence 998777766544
No 31
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.80 E-value=1.3e-19 Score=137.84 Aligned_cols=84 Identities=27% Similarity=0.409 Sum_probs=75.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-Ccc---CCeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFI---DGRLR 102 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i---~Gr~~ 102 (261)
.+...++|||+||+++++|++|+++|++||.|++|+|++|+.++++||||||+|.+.++|++||+.+| ..+ +|+.+
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 45677999999999999999999999999999999999999999999999999999999999999988 666 77877
Q ss_pred eeeeecCC
Q 024889 103 PATLFSGS 110 (261)
Q Consensus 103 ~v~~~~~~ 110 (261)
.|+.....
T Consensus 89 ~v~~a~~~ 96 (106)
T 2dgp_A 89 QVKPADSE 96 (106)
T ss_dssp EEEECCCC
T ss_pred EEEECCcc
Confidence 77765543
No 32
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1e-19 Score=136.54 Aligned_cols=83 Identities=22% Similarity=0.277 Sum_probs=76.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
.+...++|||+|||+++++++|+++|++||.|+++++++++.++++||||||+|.+.++|++||+.+| ..|+|+.++|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999 89999988887
Q ss_pred eecC
Q 024889 106 LFSG 109 (261)
Q Consensus 106 ~~~~ 109 (261)
+...
T Consensus 91 ~a~~ 94 (98)
T 2cqp_A 91 LGSG 94 (98)
T ss_dssp ESSC
T ss_pred EcCC
Confidence 7543
No 33
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=8.7e-19 Score=135.01 Aligned_cols=82 Identities=23% Similarity=0.335 Sum_probs=75.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
.....++|||+||++++++++|+++|++||.|++|+|++++ +++++|||||+|.+.++|++||+.|| ..|+|+.+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 44557899999999999999999999999999999999998 49999999999999999999999988 89999988887
Q ss_pred eecC
Q 024889 106 LFSG 109 (261)
Q Consensus 106 ~~~~ 109 (261)
+...
T Consensus 90 ~a~~ 93 (114)
T 2do0_A 90 MDER 93 (114)
T ss_dssp ECSC
T ss_pred Eccc
Confidence 7544
No 34
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.80 E-value=4.8e-19 Score=134.52 Aligned_cols=82 Identities=27% Similarity=0.310 Sum_probs=73.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCC---eeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDG---RLRP 103 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~G---r~~~ 103 (261)
+...++|||+||++++++++|+++|++||.|++|+|++++ +++++|||||+|.+.++|++||+.|| ..+.| +.+.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 4457999999999999999999999999999999999998 69999999999999999999999998 77877 7777
Q ss_pred eeeecCC
Q 024889 104 ATLFSGS 110 (261)
Q Consensus 104 v~~~~~~ 110 (261)
|.+....
T Consensus 91 V~~a~~~ 97 (105)
T 2dnh_A 91 VKFADTD 97 (105)
T ss_dssp EEESCSS
T ss_pred EEECccC
Confidence 7665543
No 35
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.80 E-value=4e-20 Score=137.96 Aligned_cols=78 Identities=21% Similarity=0.301 Sum_probs=71.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCC-CEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC--CccCCeeeeeeeec
Q 024889 32 TKVFVGGLAWETQSETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT--PFIDGRLRPATLFS 108 (261)
Q Consensus 32 ~~vfVgnLp~~~te~~L~~~F~~~G-~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n--~~i~Gr~~~v~~~~ 108 (261)
++|||+|||++++|++|+++|++|| .|++|+|++|+.|+++||||||+|.+.++|++||+.++ ..|+||.+.|....
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 6899999999999999999999999 89999999999999999999999999999999999874 57999987777654
Q ss_pred C
Q 024889 109 G 109 (261)
Q Consensus 109 ~ 109 (261)
.
T Consensus 82 ~ 82 (91)
T 2lxi_A 82 P 82 (91)
T ss_dssp S
T ss_pred C
Confidence 3
No 36
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.80 E-value=1.7e-19 Score=140.04 Aligned_cols=79 Identities=30% Similarity=0.481 Sum_probs=71.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeeec
Q 024889 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLFS 108 (261)
Q Consensus 30 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~~ 108 (261)
..++|||+|||++++|++|+++|++||.|++|+|++|+ +++||||||+|.+.++|++||+.|+ ..|+|+.+.|....
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35789999999999999999999999999999999995 5689999999999999999999999 89999988887765
Q ss_pred CC
Q 024889 109 GS 110 (261)
Q Consensus 109 ~~ 110 (261)
.+
T Consensus 82 ~~ 83 (115)
T 4f25_A 82 SR 83 (115)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 37
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.5e-19 Score=134.37 Aligned_cols=84 Identities=23% Similarity=0.275 Sum_probs=75.1
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeee
Q 024889 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPA 104 (261)
Q Consensus 26 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v 104 (261)
..+...++|||+||++++++++|+++|++||.|++|+|++|+. .+||||||+|.+.++|++||+.+| ..|+|+.++|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 4566779999999999999999999999999999999999964 479999999999999999999988 8899998888
Q ss_pred eeecCCC
Q 024889 105 TLFSGST 111 (261)
Q Consensus 105 ~~~~~~~ 111 (261)
++.....
T Consensus 88 ~~a~~~~ 94 (103)
T 2cqi_A 88 NWATTPS 94 (103)
T ss_dssp EECCCTT
T ss_pred EECCCCc
Confidence 7765543
No 38
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.2e-19 Score=139.08 Aligned_cols=83 Identities=36% Similarity=0.675 Sum_probs=75.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
.+...++|||+||++++++++|+++|++||.|++|+|++|+.++++||||||+|.+.++|++||+. + ..|+|+.+.|+
T Consensus 23 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~ 101 (116)
T 1x4b_A 23 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPK 101 (116)
T ss_dssp HHHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEE
Confidence 344558999999999999999999999999999999999999999999999999999999999999 6 89999988877
Q ss_pred eecCC
Q 024889 106 LFSGS 110 (261)
Q Consensus 106 ~~~~~ 110 (261)
....+
T Consensus 102 ~a~~~ 106 (116)
T 1x4b_A 102 RAVAR 106 (116)
T ss_dssp CCSSC
T ss_pred ECCCC
Confidence 65543
No 39
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=5.4e-19 Score=134.02 Aligned_cols=83 Identities=23% Similarity=0.386 Sum_probs=75.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhc-CCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-Cc-cCCeeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQ-FGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PF-IDGRLRP 103 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~-~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~-i~Gr~~~ 103 (261)
+....++|||+||++++++++|+++|++ ||.|++|+|++|+ ++++||||||+|.+.++|++||+.++ .. |+|+.+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 3456689999999999999999999999 9999999999998 89999999999999999999999999 78 9999877
Q ss_pred eeeecCC
Q 024889 104 ATLFSGS 110 (261)
Q Consensus 104 v~~~~~~ 110 (261)
|.+...+
T Consensus 84 v~~a~~~ 90 (104)
T 2dhg_A 84 LSVAIPK 90 (104)
T ss_dssp CCBCCCC
T ss_pred EEEccCC
Confidence 7765443
No 40
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.80 E-value=4.8e-20 Score=136.77 Aligned_cols=78 Identities=21% Similarity=0.390 Sum_probs=70.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCC--CEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeeec
Q 024889 32 TKVFVGGLAWETQSETMRRYFEQFG--EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLFS 108 (261)
Q Consensus 32 ~~vfVgnLp~~~te~~L~~~F~~~G--~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~~ 108 (261)
.+|||+||+++++|++|+++|++|| .|.+|+|++|+.+|++||||||+|.+.++|++||+.+| ..|+||.++|+...
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999999999999999999 89999987776654
Q ss_pred C
Q 024889 109 G 109 (261)
Q Consensus 109 ~ 109 (261)
.
T Consensus 82 ~ 82 (90)
T 3p5t_L 82 K 82 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 41
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.9e-19 Score=132.99 Aligned_cols=84 Identities=27% Similarity=0.482 Sum_probs=75.3
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeee
Q 024889 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPA 104 (261)
Q Consensus 26 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v 104 (261)
..+...++|||+||++++++++|+++|++||.|++|+|++++. .++|||||+|.+.++|++||+.+| ..|+|+.+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3456779999999999999999999999999999999999864 489999999999999999999988 8999998888
Q ss_pred eeecCCC
Q 024889 105 TLFSGST 111 (261)
Q Consensus 105 ~~~~~~~ 111 (261)
++...+.
T Consensus 88 ~~a~~~~ 94 (103)
T 2cq3_A 88 NNATARV 94 (103)
T ss_dssp EECCSSC
T ss_pred EEcccCC
Confidence 7765543
No 42
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=4e-19 Score=133.58 Aligned_cols=73 Identities=22% Similarity=0.364 Sum_probs=70.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEE-EEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCee
Q 024889 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEIL-EAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRL 101 (261)
Q Consensus 29 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~-~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~ 101 (261)
...++|||+||+++++|++|+++|++||.|. +|+|++|+.+++++|||||+|.+.++|++||+.|| ..|+|+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGAT 81 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCS
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 3568999999999999999999999999999 99999999999999999999999999999999999 8899997
No 43
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.80 E-value=2.8e-19 Score=131.01 Aligned_cols=80 Identities=34% Similarity=0.502 Sum_probs=73.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeee
Q 024889 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLF 107 (261)
Q Consensus 29 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~ 107 (261)
...++|||+||++++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++||+.+| ..++|+.+.|++.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 356899999999999999999999999999999999999899999999999999999999999988 8999998887765
Q ss_pred c
Q 024889 108 S 108 (261)
Q Consensus 108 ~ 108 (261)
.
T Consensus 84 ~ 84 (87)
T 3bs9_A 84 T 84 (87)
T ss_dssp C
T ss_pred C
Confidence 4
No 44
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.80 E-value=5.4e-20 Score=137.19 Aligned_cols=80 Identities=18% Similarity=0.202 Sum_probs=72.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATL 106 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~ 106 (261)
....++|||+|||+++++++|+++|++||.|.++++++++.++++||||||+|.+.++|++||+.+| ..|+|+.++|+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 3346899999999999999999999999999999999999899999999999999999999999988 899999877765
Q ss_pred e
Q 024889 107 F 107 (261)
Q Consensus 107 ~ 107 (261)
.
T Consensus 92 a 92 (95)
T 2ek1_A 92 P 92 (95)
T ss_dssp C
T ss_pred c
Confidence 4
No 45
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.9e-19 Score=133.42 Aligned_cols=81 Identities=26% Similarity=0.438 Sum_probs=75.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEE-EEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeee
Q 024889 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEA-VVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLF 107 (261)
Q Consensus 30 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v-~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~ 107 (261)
..++|||+|||+++++++|+++|++||.|.+| +|++|+.+++++|||||+|.+.++|++||+.+| ..|+|+.+.|++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 46899999999999999999999999999999 999998899999999999999999999999999 8999998888776
Q ss_pred cCC
Q 024889 108 SGS 110 (261)
Q Consensus 108 ~~~ 110 (261)
..+
T Consensus 84 ~~~ 86 (96)
T 1x5t_A 84 FKK 86 (96)
T ss_dssp CCC
T ss_pred ccc
Confidence 554
No 46
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3.6e-19 Score=133.58 Aligned_cols=82 Identities=26% Similarity=0.457 Sum_probs=74.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCC---CCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeee
Q 024889 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKN---TGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPA 104 (261)
Q Consensus 29 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~---tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v 104 (261)
...++|||+||+++++|++|+++|++||.|.+|+|++++. |++++|||||+|.+.++|++||+.|| ..|+|+.+.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3568999999999999999999999999999999999876 67999999999999999999999999 8999998777
Q ss_pred eeecCC
Q 024889 105 TLFSGS 110 (261)
Q Consensus 105 ~~~~~~ 110 (261)
++...+
T Consensus 83 ~~a~~~ 88 (98)
T 2cpf_A 83 RISERA 88 (98)
T ss_dssp ECSSCS
T ss_pred EEccCC
Confidence 765543
No 47
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.80 E-value=4.2e-19 Score=128.98 Aligned_cols=78 Identities=32% Similarity=0.505 Sum_probs=73.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeeecC
Q 024889 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLFSG 109 (261)
Q Consensus 32 ~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~~~ 109 (261)
++|||+|||.++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++||+.+| ..|+|+.+.|++...
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 689999999999999999999999999999999999899999999999999999999999988 899999887776543
No 48
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.79 E-value=5.6e-20 Score=138.71 Aligned_cols=82 Identities=16% Similarity=0.238 Sum_probs=73.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCC--EEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-C----ccCC
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGE--ILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-P----FIDG 99 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~--I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~----~i~G 99 (261)
....-.+|||+||++++||++|+++|++||. |.+|+|++|+.|+++||||||+|.+.++|++||+.+| . .|+|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 4456689999999999999999999999995 6799999999999999999999999999999999988 3 4899
Q ss_pred eeeeeeeec
Q 024889 100 RLRPATLFS 108 (261)
Q Consensus 100 r~~~v~~~~ 108 (261)
|.+.|+++.
T Consensus 85 r~i~V~~Ak 93 (95)
T 2lkz_A 85 KTIGVDFAK 93 (95)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEEcc
Confidence 988777653
No 49
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.4e-19 Score=137.24 Aligned_cols=85 Identities=22% Similarity=0.321 Sum_probs=77.6
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEE--------EEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-Cc
Q 024889 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEIL--------EAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PF 96 (261)
Q Consensus 26 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~--------~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~ 96 (261)
..+...++|||+||++++++++|+++|++||.|. +|+|++|+.++++||||||+|.+.++|++||+.|| ..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 4566789999999999999999999999999999 69999999899999999999999999999999988 89
Q ss_pred cCCeeeeeeeecCC
Q 024889 97 IDGRLRPATLFSGS 110 (261)
Q Consensus 97 i~Gr~~~v~~~~~~ 110 (261)
|+|+.+.|++...+
T Consensus 90 ~~g~~l~V~~a~~~ 103 (113)
T 2cpe_A 90 FQGSKLKVSLARKK 103 (113)
T ss_dssp ETTEECEEECSSCC
T ss_pred cCCCEEEEEECCCC
Confidence 99998877765543
No 50
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.79 E-value=2.6e-19 Score=133.50 Aligned_cols=81 Identities=27% Similarity=0.393 Sum_probs=74.3
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeee
Q 024889 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPA 104 (261)
Q Consensus 26 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v 104 (261)
..+...++|||+||++++++++|+++|++||+|++|+|++|+. +++||||||+|.+.++|++||+.+| ..|+|+.+.|
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 3556779999999999999999999999999999999999986 9999999999999999999999988 8999998777
Q ss_pred eee
Q 024889 105 TLF 107 (261)
Q Consensus 105 ~~~ 107 (261)
++.
T Consensus 90 ~~a 92 (95)
T 2ywk_A 90 SGP 92 (95)
T ss_dssp ECC
T ss_pred EEc
Confidence 654
No 51
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.79 E-value=4.5e-19 Score=136.31 Aligned_cols=89 Identities=31% Similarity=0.518 Sum_probs=80.6
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCC
Q 024889 21 YLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDG 99 (261)
Q Consensus 21 ~~~~~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~G 99 (261)
..+.+..+...++|||+||+.++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+.+| ..|+|
T Consensus 16 ~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g 95 (108)
T 2jrs_A 16 ANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG 95 (108)
T ss_dssp CCSSCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred ccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34456677788999999999999999999999999999999999999999999999999999999999999988 89999
Q ss_pred eeeeeeeecC
Q 024889 100 RLRPATLFSG 109 (261)
Q Consensus 100 r~~~v~~~~~ 109 (261)
+.++|+....
T Consensus 96 ~~l~V~~a~~ 105 (108)
T 2jrs_A 96 RPMKVGHVTE 105 (108)
T ss_dssp SCCEEECSCS
T ss_pred EEEEEEEccc
Confidence 9887776543
No 52
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.2e-19 Score=140.03 Aligned_cols=83 Identities=23% Similarity=0.294 Sum_probs=75.8
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeee
Q 024889 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPA 104 (261)
Q Consensus 26 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v 104 (261)
..+...++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++|| .+| ..|+|+.+.|
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 98 (114)
T 2cq4_A 20 PEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIV 98 (114)
T ss_dssp TTHHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEE
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEE
Confidence 34456689999999999999999999999999999999999999999999999999999999999 778 8999998888
Q ss_pred eeecC
Q 024889 105 TLFSG 109 (261)
Q Consensus 105 ~~~~~ 109 (261)
.+...
T Consensus 99 ~~a~~ 103 (114)
T 2cq4_A 99 QASQA 103 (114)
T ss_dssp EEHHH
T ss_pred EecCC
Confidence 77543
No 53
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.6e-19 Score=134.84 Aligned_cols=83 Identities=23% Similarity=0.272 Sum_probs=76.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
.....++|||+||++++++++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|++||+.+| ..|+|+.+.|+
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999988 89999988877
Q ss_pred eecC
Q 024889 106 LFSG 109 (261)
Q Consensus 106 ~~~~ 109 (261)
+...
T Consensus 99 ~a~~ 102 (106)
T 1p27_B 99 WCFV 102 (106)
T ss_dssp ESEE
T ss_pred eecC
Confidence 6543
No 54
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.2e-19 Score=140.96 Aligned_cols=83 Identities=18% Similarity=0.374 Sum_probs=74.3
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeee
Q 024889 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRP 103 (261)
Q Consensus 25 ~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~ 103 (261)
.......++|||+|||++++|++|+++|+.||.|.++.++.+..+++++|||||+|.+.++|++||+ +| ..|+|+.+.
T Consensus 19 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 97 (124)
T 1wel_A 19 RSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQ 97 (124)
T ss_dssp SSCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEE
Confidence 3445667999999999999999999999999999997777777789999999999999999999999 88 899999888
Q ss_pred eeeec
Q 024889 104 ATLFS 108 (261)
Q Consensus 104 v~~~~ 108 (261)
|....
T Consensus 98 V~~a~ 102 (124)
T 1wel_A 98 VHPIT 102 (124)
T ss_dssp EEEEC
T ss_pred EEECC
Confidence 77653
No 55
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.79 E-value=3.5e-19 Score=129.91 Aligned_cols=80 Identities=30% Similarity=0.431 Sum_probs=74.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATL 106 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~ 106 (261)
+...++|||+||++++++++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|++||+.+| ..|+|+.++|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3456899999999999999999999999999999999998899999999999999999999999988 899999877765
Q ss_pred e
Q 024889 107 F 107 (261)
Q Consensus 107 ~ 107 (261)
.
T Consensus 84 a 84 (85)
T 3mdf_A 84 A 84 (85)
T ss_dssp C
T ss_pred c
Confidence 3
No 56
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.79 E-value=4.5e-19 Score=145.33 Aligned_cols=81 Identities=17% Similarity=0.350 Sum_probs=73.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCC--CEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFG--EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPA 104 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G--~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v 104 (261)
+...++|||+||+++++|++|+++|++|| +|.+|+|++|+.+|++||||||+|.+.++|++||+.|| ..|+|+.+.|
T Consensus 52 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V 131 (156)
T 3n9u_C 52 RNRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDV 131 (156)
T ss_dssp ----CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEE
Confidence 34568999999999999999999999999 99999999999999999999999999999999999999 9999998887
Q ss_pred eeec
Q 024889 105 TLFS 108 (261)
Q Consensus 105 ~~~~ 108 (261)
....
T Consensus 132 ~~a~ 135 (156)
T 3n9u_C 132 RPAT 135 (156)
T ss_dssp EECC
T ss_pred EEcC
Confidence 7653
No 57
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.79 E-value=1.5e-19 Score=136.97 Aligned_cols=81 Identities=16% Similarity=0.188 Sum_probs=74.8
Q ss_pred CCCCcEEEEcCCCC------CCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCC-
Q 024889 28 DTTYTKVFVGGLAW------ETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDG- 99 (261)
Q Consensus 28 ~~~~~~vfVgnLp~------~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~G- 99 (261)
+...++|||+|||. ++++++|+++|++||.|.+|+|++|+.|+++||||||+|.+.++|++||+.+| ..|+|
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 34468999999999 99999999999999999999999999999999999999999999999999999 89999
Q ss_pred eeeeeeeec
Q 024889 100 RLRPATLFS 108 (261)
Q Consensus 100 r~~~v~~~~ 108 (261)
+.++|.++.
T Consensus 83 r~l~V~~a~ 91 (100)
T 3ns6_A 83 HRLFLYTMK 91 (100)
T ss_dssp CBCEEEESH
T ss_pred eEEEEEECc
Confidence 887777653
No 58
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.78 E-value=7.9e-19 Score=132.18 Aligned_cols=82 Identities=27% Similarity=0.383 Sum_probs=75.4
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEE--------EEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-Cc
Q 024889 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE--------AVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PF 96 (261)
Q Consensus 26 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~--------v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~ 96 (261)
......++|||+||++++++++|+++|++||.|.+ |+|++|+.++++||||||+|.+.++|++||+.+| ..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34556799999999999999999999999999999 9999999999999999999999999999999988 89
Q ss_pred cCCeeeeeeee
Q 024889 97 IDGRLRPATLF 107 (261)
Q Consensus 97 i~Gr~~~v~~~ 107 (261)
|+|+.++|+.+
T Consensus 88 ~~g~~l~V~~A 98 (99)
T 2la6_A 88 FSGNPIKVSFA 98 (99)
T ss_dssp SSSSBCEEEEC
T ss_pred eCCcEEEEEec
Confidence 99998777653
No 59
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.78 E-value=1.8e-18 Score=134.60 Aligned_cols=83 Identities=29% Similarity=0.533 Sum_probs=76.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
++...++|||+||++++++++|+++|++||.|++|+|++|+ +++++|||||+|.+.++|++||+.+| ..|+|+.+.|+
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45567899999999999999999999999999999999998 89999999999999999999999999 89999988887
Q ss_pred eecCC
Q 024889 106 LFSGS 110 (261)
Q Consensus 106 ~~~~~ 110 (261)
+....
T Consensus 82 ~a~~~ 86 (116)
T 2fy1_A 82 QAKKP 86 (116)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 76543
No 60
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.78 E-value=1.3e-18 Score=141.49 Aligned_cols=85 Identities=21% Similarity=0.276 Sum_probs=78.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
.....++|||+||+++++|++|+++|++||+|++|+|++++.++++||||||+|.+.++|++||+.|| ..|+|+.+.|+
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999 89999998888
Q ss_pred eecCCC
Q 024889 106 LFSGST 111 (261)
Q Consensus 106 ~~~~~~ 111 (261)
+.....
T Consensus 115 ~a~~~~ 120 (156)
T 1h2v_Z 115 WDAGFK 120 (156)
T ss_dssp EESCCC
T ss_pred ECCCCC
Confidence 876543
No 61
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.78 E-value=4.1e-19 Score=138.64 Aligned_cols=79 Identities=16% Similarity=0.230 Sum_probs=72.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCC---EEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGE---ILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLR 102 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~---I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~ 102 (261)
.....++|||+||+++++|++|+++|+.||. |++|+|++|+. |++||||||+|.+.++|++||+ +| ..|+||.+
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 3456789999999999999999999999999 89999999987 9999999999999999999999 77 89999988
Q ss_pred eeeee
Q 024889 103 PATLF 107 (261)
Q Consensus 103 ~v~~~ 107 (261)
+|...
T Consensus 91 ~V~~a 95 (118)
T 2db1_A 91 EVFKS 95 (118)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 77765
No 62
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=138.52 Aligned_cols=80 Identities=30% Similarity=0.442 Sum_probs=74.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
.+...++|||+|||.++++++|+++|++||+|++++|++|+.++++||||||+|.+.++|++||+.+| ..|+|+.++|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45567999999999999999999999999999999999999999999999999999999999999999 89999987765
Q ss_pred e
Q 024889 106 L 106 (261)
Q Consensus 106 ~ 106 (261)
+
T Consensus 139 ~ 139 (140)
T 2ku7_A 139 L 139 (140)
T ss_dssp C
T ss_pred e
Confidence 4
No 63
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.78 E-value=7.6e-19 Score=131.56 Aligned_cols=79 Identities=24% Similarity=0.457 Sum_probs=74.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeeecC
Q 024889 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLFSG 109 (261)
Q Consensus 31 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~~~ 109 (261)
.++|||+||++++++++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|++||+.+| ..|+|+.+.|+....
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 4799999999999999999999999999999999999999999999999999999999999999 899999888777554
No 64
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.3e-19 Score=135.89 Aligned_cols=86 Identities=27% Similarity=0.519 Sum_probs=78.3
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeee
Q 024889 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRP 103 (261)
Q Consensus 25 ~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~ 103 (261)
+..+...++|||+||++++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+.+| ..|+|+.+.
T Consensus 2 p~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (104)
T 1p1t_A 2 PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALR 81 (104)
T ss_dssp CCSHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBE
T ss_pred CCcCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 3455667899999999999999999999999999999999999899999999999999999999999999 899999888
Q ss_pred eeeecCC
Q 024889 104 ATLFSGS 110 (261)
Q Consensus 104 v~~~~~~ 110 (261)
|+.....
T Consensus 82 v~~a~~~ 88 (104)
T 1p1t_A 82 VDNAASE 88 (104)
T ss_dssp EEETTCT
T ss_pred EEeCCCc
Confidence 7765543
No 65
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.3e-18 Score=131.20 Aligned_cols=79 Identities=24% Similarity=0.273 Sum_probs=71.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEE-EEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILE-AVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~-v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
....++|||+|||++++|++|+++|++||.|.+ |+|++| .++++||||||+|.+.++|++||+. + ..|+||.++|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 455689999999999999999999999999998 888888 6899999999999999999999998 6 89999987776
Q ss_pred eec
Q 024889 106 LFS 108 (261)
Q Consensus 106 ~~~ 108 (261)
...
T Consensus 90 ~~~ 92 (104)
T 1wg5_A 90 KSS 92 (104)
T ss_dssp EEC
T ss_pred ECC
Confidence 643
No 66
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.78 E-value=1.9e-18 Score=128.01 Aligned_cols=81 Identities=27% Similarity=0.466 Sum_probs=73.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATL 106 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~ 106 (261)
+...++|||+|||+++++++|+++|++||.|++|+|+++ ++++||||||+|.+.++|++||+.+| ..|+|+.++|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 445689999999999999999999999999999999985 79999999999999999999999988 899999887776
Q ss_pred ecCC
Q 024889 107 FSGS 110 (261)
Q Consensus 107 ~~~~ 110 (261)
....
T Consensus 83 a~~~ 86 (92)
T 2dgv_A 83 DRNA 86 (92)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 5543
No 67
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.78 E-value=6.9e-19 Score=134.87 Aligned_cols=84 Identities=24% Similarity=0.248 Sum_probs=77.2
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeee
Q 024889 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPA 104 (261)
Q Consensus 26 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v 104 (261)
......++|||+||++++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+.+| ..|+|+.+.|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 345567899999999999999999999999999999999999999999999999999999999999988 8999998887
Q ss_pred eeecC
Q 024889 105 TLFSG 109 (261)
Q Consensus 105 ~~~~~ 109 (261)
.+...
T Consensus 101 ~~a~~ 105 (110)
T 1oo0_B 101 DWCFV 105 (110)
T ss_dssp EESEE
T ss_pred EEccc
Confidence 77554
No 68
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=131.40 Aligned_cols=80 Identities=26% Similarity=0.361 Sum_probs=71.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
.+...++|||+||++++++++|+++|++||.| +++++ .++++||||||+|.+.++|++||+.+| ..|+|+.+.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 45567999999999999999999999999987 56666 579999999999999999999999999 89999988888
Q ss_pred eecCC
Q 024889 106 LFSGS 110 (261)
Q Consensus 106 ~~~~~ 110 (261)
+...+
T Consensus 87 ~a~~~ 91 (101)
T 2fc9_A 87 LQGPR 91 (101)
T ss_dssp ECSSC
T ss_pred EcCCC
Confidence 76554
No 69
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.9e-19 Score=137.09 Aligned_cols=80 Identities=14% Similarity=0.233 Sum_probs=73.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCE-EEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEI-LEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPA 104 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I-~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v 104 (261)
.+...++|||+|||++++|++|+++|++||.| .+|+|++|+ ++++||||||+|.+.++|++||+. | ..|+|+.+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 34566899999999999999999999999999 899999998 899999999999999999999998 7 8999998887
Q ss_pred eeec
Q 024889 105 TLFS 108 (261)
Q Consensus 105 ~~~~ 108 (261)
.+..
T Consensus 89 ~~a~ 92 (114)
T 2cpy_A 89 HVVT 92 (114)
T ss_dssp EEEC
T ss_pred EECC
Confidence 7654
No 70
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=6.8e-19 Score=135.68 Aligned_cols=82 Identities=27% Similarity=0.342 Sum_probs=73.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHH---HHHhcCCCEEEEEEeecCCCC---CcceEEEEEEcCHHHHHHHHhcCC-CccCCe
Q 024889 28 DTTYTKVFVGGLAWETQSETMR---RYFEQFGEILEAVVITDKNTG---RSKGYGFVTFREPEAARRACADPT-PFIDGR 100 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~---~~F~~~G~I~~v~v~~d~~tg---~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr 100 (261)
....++|||+|||++++|++|+ ++|++||+|.+|+|++++.++ +++|||||+|.+.++|++||+.|| ..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 4456899999999999999999 999999999999999998754 566999999999999999999999 899999
Q ss_pred eeeeeeecC
Q 024889 101 LRPATLFSG 109 (261)
Q Consensus 101 ~~~v~~~~~ 109 (261)
.++|.+...
T Consensus 92 ~l~V~~a~~ 100 (111)
T 2cpi_A 92 TLKASLGTT 100 (111)
T ss_dssp EEEEESCCC
T ss_pred EEEEEeccc
Confidence 877776543
No 71
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.77 E-value=4.6e-19 Score=141.67 Aligned_cols=89 Identities=26% Similarity=0.414 Sum_probs=80.6
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCe
Q 024889 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGR 100 (261)
Q Consensus 22 ~~~~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr 100 (261)
...+..+...++|||+||++++++++|+++|++||.|++|+|++++.++++||||||+|.+.++|++||+.+| ..|+|+
T Consensus 38 ~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~ 117 (135)
T 2lea_A 38 GRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 117 (135)
T ss_dssp CCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSS
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 3345667778999999999999999999999999999999999999899999999999999999999999999 899999
Q ss_pred eeeeeeecCC
Q 024889 101 LRPATLFSGS 110 (261)
Q Consensus 101 ~~~v~~~~~~ 110 (261)
.+.|++....
T Consensus 118 ~l~V~~a~~~ 127 (135)
T 2lea_A 118 ELRVQMARYG 127 (135)
T ss_dssp CCEEEECCCC
T ss_pred EEEEEECCCC
Confidence 8888776543
No 72
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=8.6e-19 Score=133.96 Aligned_cols=80 Identities=16% Similarity=0.237 Sum_probs=73.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
.+...++|||+|||+++++++|+++|++||.|.+|.|++|+. +++||||||+|.+.++|++||+ ++ ..|+|+.+.|.
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLIL 84 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEE
Confidence 355678999999999999999999999999999999999987 9999999999999999999999 66 89999988777
Q ss_pred eec
Q 024889 106 LFS 108 (261)
Q Consensus 106 ~~~ 108 (261)
...
T Consensus 85 ~~~ 87 (103)
T 1s79_A 85 FKD 87 (103)
T ss_dssp EHH
T ss_pred Ech
Confidence 543
No 73
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.77 E-value=1.5e-18 Score=132.25 Aligned_cols=82 Identities=28% Similarity=0.383 Sum_probs=75.8
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeee
Q 024889 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPA 104 (261)
Q Consensus 26 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v 104 (261)
......++|||+||++++++++|+++|++||.|++|+|++++ +++++|||||+|.+.++|++||+.|| ..|+|+.+.|
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 445667999999999999999999999999999999999998 89999999999999999999999988 8999998888
Q ss_pred eeec
Q 024889 105 TLFS 108 (261)
Q Consensus 105 ~~~~ 108 (261)
++..
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 7653
No 74
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.77 E-value=1.4e-18 Score=127.84 Aligned_cols=78 Identities=19% Similarity=0.434 Sum_probs=72.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeeec
Q 024889 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLFS 108 (261)
Q Consensus 30 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~~ 108 (261)
..++|||+|||+++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++|| .+| ..|+|+.+.|....
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4589999999999999999999999999999999999989999999999999999999999 788 89999988777654
No 75
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=131.89 Aligned_cols=79 Identities=23% Similarity=0.247 Sum_probs=70.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATL 106 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~ 106 (261)
....++|||+|||++++|++|+++|++|| |++|+|++|+ ++++||||||+|.+.++|++||+ +| ..|++|.++|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 44568999999999999999999999999 5599999998 79999999999999999999996 57 899999877766
Q ss_pred ecC
Q 024889 107 FSG 109 (261)
Q Consensus 107 ~~~ 109 (261)
...
T Consensus 89 ~~~ 91 (102)
T 1wez_A 89 NST 91 (102)
T ss_dssp ECC
T ss_pred CCC
Confidence 543
No 76
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=3e-19 Score=127.91 Aligned_cols=76 Identities=38% Similarity=0.726 Sum_probs=71.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCCCccCCeeeeeeee
Q 024889 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRLRPATLF 107 (261)
Q Consensus 32 ~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n~~i~Gr~~~v~~~ 107 (261)
++|||+|||+++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++||+.++..++|+.+.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 5899999999999999999999999999999999998999999999999999999999999998899998777653
No 77
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3e-19 Score=130.60 Aligned_cols=77 Identities=26% Similarity=0.516 Sum_probs=71.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 29 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
...++|||+|||+++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+.|| ..|+|+.+++.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 80 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQS 80 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeec
Confidence 456899999999999999999999999999999999999999999999999999999999999999 88999865443
No 78
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.77 E-value=9.3e-19 Score=137.30 Aligned_cols=88 Identities=23% Similarity=0.270 Sum_probs=79.5
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeee
Q 024889 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRP 103 (261)
Q Consensus 25 ~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~ 103 (261)
+......++|||+||++++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.|| ..|+|+.+.
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 3445567899999999999999999999999999999999999899999999999999999999999989 899999888
Q ss_pred eeeecCCCC
Q 024889 104 ATLFSGSTQ 112 (261)
Q Consensus 104 v~~~~~~~~ 112 (261)
|++......
T Consensus 96 v~~a~~~~~ 104 (126)
T 3ex7_B 96 VDWCFVRGP 104 (126)
T ss_dssp EEESEESSS
T ss_pred EEEecCCCC
Confidence 887765433
No 79
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.77 E-value=1e-18 Score=128.09 Aligned_cols=80 Identities=28% Similarity=0.417 Sum_probs=73.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCC-cceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeee
Q 024889 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGR-SKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLF 107 (261)
Q Consensus 30 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~-skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~ 107 (261)
+.++|||+||++++++++|+++|++||.|.+|+|++++.++. ++|||||+|.+.++|++||+.+| ..|+|+.+.|+..
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999999987766 99999999999999999999988 8999998888776
Q ss_pred cC
Q 024889 108 SG 109 (261)
Q Consensus 108 ~~ 109 (261)
..
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 80
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.8e-18 Score=130.95 Aligned_cols=75 Identities=17% Similarity=0.425 Sum_probs=69.1
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCe
Q 024889 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGR 100 (261)
Q Consensus 25 ~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr 100 (261)
...+...++|||+||++++++++|+++|++||.|.+|+|++|+ ++++||||||+|.+.++|++||+.|| ..|+++
T Consensus 19 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~ 94 (114)
T 1x5o_A 19 KQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTP 94 (114)
T ss_dssp SCCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCC
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCC
Confidence 3456677999999999999999999999999999999999998 89999999999999999999999998 778554
No 81
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.76 E-value=7.1e-19 Score=125.59 Aligned_cols=73 Identities=37% Similarity=0.734 Sum_probs=68.3
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeee
Q 024889 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATL 106 (261)
Q Consensus 33 ~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~ 106 (261)
+|||+|||+++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++||+ ++ ..|+|+.+.|+.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 74 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKK 74 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEEC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEe
Confidence 59999999999999999999999999999999999899999999999999999999998 67 899999776653
No 82
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.76 E-value=1.3e-18 Score=151.09 Aligned_cols=79 Identities=20% Similarity=0.395 Sum_probs=73.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCC--CEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeee
Q 024889 30 TYTKVFVGGLAWETQSETMRRYFEQFG--EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATL 106 (261)
Q Consensus 30 ~~~~vfVgnLp~~~te~~L~~~F~~~G--~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~ 106 (261)
..++|||+||+++++|++|+++|++|| +|++|+|++|+.|+++||||||+|.+.++|++||+.|| ..|+|+.++|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 99999999999999999999999999999999999999 999999888876
Q ss_pred ec
Q 024889 107 FS 108 (261)
Q Consensus 107 ~~ 108 (261)
..
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 83
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=5e-18 Score=125.72 Aligned_cols=80 Identities=18% Similarity=0.337 Sum_probs=73.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATL 106 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~ 106 (261)
+...++|||+|||+++++++|+++|++| .|.+|+|+++ .+++++|||||+|.+.++|++||+ +| ..|+|+.+.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 4466899999999999999999999999 9999999999 679999999999999999999999 88 899999888877
Q ss_pred ecCC
Q 024889 107 FSGS 110 (261)
Q Consensus 107 ~~~~ 110 (261)
...+
T Consensus 84 a~~~ 87 (91)
T 2dgw_A 84 EKSG 87 (91)
T ss_dssp ESSC
T ss_pred CCcC
Confidence 6543
No 84
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.4e-18 Score=129.09 Aligned_cols=77 Identities=13% Similarity=0.148 Sum_probs=71.0
Q ss_pred CCcEEEEcCCCCCCcHHHHH----HHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeee
Q 024889 30 TYTKVFVGGLAWETQSETMR----RYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPA 104 (261)
Q Consensus 30 ~~~~vfVgnLp~~~te~~L~----~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v 104 (261)
+.++|||+||++++++++|+ ++|++||.|++|+|++|+.+ ||||||+|.+.++|++||+.+| ..|+|+.++|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 45899999999999999999 99999999999999999765 8999999999999999999999 8899998888
Q ss_pred eeecC
Q 024889 105 TLFSG 109 (261)
Q Consensus 105 ~~~~~ 109 (261)
+....
T Consensus 85 ~~a~~ 89 (96)
T 2dgx_A 85 SLATG 89 (96)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 77644
No 85
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.76 E-value=3.9e-18 Score=133.36 Aligned_cols=80 Identities=21% Similarity=0.397 Sum_probs=74.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeee
Q 024889 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLF 107 (261)
Q Consensus 29 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~ 107 (261)
...++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++|| .+| ..|+|+.+.|++.
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 34689999999999999999999999999999999999989999999999999999999999 788 8999998887765
Q ss_pred cC
Q 024889 108 SG 109 (261)
Q Consensus 108 ~~ 109 (261)
..
T Consensus 113 ~~ 114 (124)
T 2jwn_A 113 RT 114 (124)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 86
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.9e-18 Score=129.46 Aligned_cols=77 Identities=13% Similarity=0.130 Sum_probs=68.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC---CccCCeeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT---PFIDGRLRP 103 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n---~~i~Gr~~~ 103 (261)
.....++|||+||+++++|++|+++|++||.|++|+|+++ ||||||+|.+.++|++||+.++ ..|+||.+.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 4456689999999999999999999999999999998875 7899999999999999999764 579999888
Q ss_pred eeeecC
Q 024889 104 ATLFSG 109 (261)
Q Consensus 104 v~~~~~ 109 (261)
|.....
T Consensus 85 V~~a~~ 90 (101)
T 2cq1_A 85 IQYSNH 90 (101)
T ss_dssp EEECSC
T ss_pred EEEcCc
Confidence 777654
No 87
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.76 E-value=1.1e-18 Score=132.00 Aligned_cols=82 Identities=17% Similarity=0.362 Sum_probs=70.7
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecC-CCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeee
Q 024889 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDK-NTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRP 103 (261)
Q Consensus 26 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~-~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~ 103 (261)
......++|||+||++++++++|+++|++|| |.+|+|++++ .+++++|||||+|.+.++|++|| .+| ..|+|+.+.
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 4456779999999999999999999999999 9999999998 68999999999999999999999 788 899999877
Q ss_pred eeeecC
Q 024889 104 ATLFSG 109 (261)
Q Consensus 104 v~~~~~ 109 (261)
|+....
T Consensus 92 V~~a~~ 97 (100)
T 2j76_E 92 VDVADQ 97 (100)
T ss_dssp CEECCC
T ss_pred EEeccC
Confidence 776543
No 88
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.7e-18 Score=128.33 Aligned_cols=82 Identities=32% Similarity=0.454 Sum_probs=72.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
.....++|||+||++++++++|+++|+.| .+|++++++.+++++|||||+|.+.++|++||+.|| ..|+|+.+.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34567999999999999999999999977 468888998899999999999999999999999988 89999988887
Q ss_pred eecCCC
Q 024889 106 LFSGST 111 (261)
Q Consensus 106 ~~~~~~ 111 (261)
+...+.
T Consensus 88 ~a~~~~ 93 (102)
T 2fc8_A 88 WAKPKG 93 (102)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 765543
No 89
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.76 E-value=3.2e-18 Score=139.18 Aligned_cols=85 Identities=26% Similarity=0.439 Sum_probs=78.2
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeee
Q 024889 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPA 104 (261)
Q Consensus 26 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v 104 (261)
......++|||+||++++++++|+++|++||.|++|+|++|+.++++||||||+|.+.++|++||+.|| ..|+|+.+.|
T Consensus 65 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 144 (158)
T 2kn4_A 65 MDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 144 (158)
T ss_dssp CCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345567999999999999999999999999999999999999899999999999999999999999999 8899998888
Q ss_pred eeecCC
Q 024889 105 TLFSGS 110 (261)
Q Consensus 105 ~~~~~~ 110 (261)
.+....
T Consensus 145 ~~a~~~ 150 (158)
T 2kn4_A 145 QMARYG 150 (158)
T ss_dssp EEECCS
T ss_pred EECCCC
Confidence 876553
No 90
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.2e-18 Score=131.46 Aligned_cols=78 Identities=14% Similarity=0.172 Sum_probs=68.3
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC---CccCCeee
Q 024889 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT---PFIDGRLR 102 (261)
Q Consensus 26 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n---~~i~Gr~~ 102 (261)
..+...++|||+||+++++|++|+++|++||+|++|+|+++ ||||||+|.+.++|++||+.++ ..|+||.+
T Consensus 11 ~~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l 84 (105)
T 1sjq_A 11 GSGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 84 (105)
T ss_dssp -CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 44567799999999999999999999999999999999876 6899999999999999999664 57999987
Q ss_pred eeeeecC
Q 024889 103 PATLFSG 109 (261)
Q Consensus 103 ~v~~~~~ 109 (261)
.|.....
T Consensus 85 ~V~~A~~ 91 (105)
T 1sjq_A 85 YIQFSNH 91 (105)
T ss_dssp CBCCCSS
T ss_pred EEEEcCC
Confidence 7766543
No 91
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.75 E-value=1.3e-17 Score=130.66 Aligned_cols=82 Identities=28% Similarity=0.390 Sum_probs=75.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
.....++|||+||++++++++|+++|++||+|++|+|++++ +++++|||||+|.+.++|++||+.+| ..|+|+.++|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 45567899999999999999999999999999999999998 89999999999999999999999988 88999988887
Q ss_pred eecC
Q 024889 106 LFSG 109 (261)
Q Consensus 106 ~~~~ 109 (261)
+...
T Consensus 110 ~a~~ 113 (124)
T 2kt5_A 110 LVAS 113 (124)
T ss_dssp EECC
T ss_pred EeCC
Confidence 7654
No 92
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.7e-18 Score=129.38 Aligned_cols=81 Identities=17% Similarity=0.294 Sum_probs=73.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCC-EEEEEEe-ecCCCCCcceEEEEEEcCHHHHHHHHhcCC---CccCCeeeee
Q 024889 30 TYTKVFVGGLAWETQSETMRRYFEQFGE-ILEAVVI-TDKNTGRSKGYGFVTFREPEAARRACADPT---PFIDGRLRPA 104 (261)
Q Consensus 30 ~~~~vfVgnLp~~~te~~L~~~F~~~G~-I~~v~v~-~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n---~~i~Gr~~~v 104 (261)
..++|||+||++++++++|+++|++||. |.+|+|+ +++.++++||||||+|.+.++|++||+.++ ..|+|+.+.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4689999999999999999999999998 9999998 888899999999999999999999999985 5799998887
Q ss_pred eeecCC
Q 024889 105 TLFSGS 110 (261)
Q Consensus 105 ~~~~~~ 110 (261)
.+...+
T Consensus 87 ~~a~~~ 92 (109)
T 2dis_A 87 DWAEPE 92 (109)
T ss_dssp EESCSS
T ss_pred EEcCCC
Confidence 776543
No 93
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.75 E-value=1e-18 Score=124.64 Aligned_cols=74 Identities=30% Similarity=0.537 Sum_probs=69.2
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCCCccCCeeeeeee
Q 024889 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRLRPATL 106 (261)
Q Consensus 33 ~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n~~i~Gr~~~v~~ 106 (261)
+|||+|||+++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++||+..+..|+|+.+.+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 69999999999999999999999999999999999999999999999999999999999855899999776654
No 94
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=2.7e-18 Score=132.69 Aligned_cols=77 Identities=19% Similarity=0.336 Sum_probs=69.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATL 106 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~ 106 (261)
..+.++|||+|||++++|++|+++|+.| .|.+|+|++|++ |++||||||+|.+.++|++|| .+| ..|+||.+.|..
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 89 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSP 89 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEE
Confidence 3445899999999999999999999999 999999999986 999999999999999999999 467 899999877655
Q ss_pred e
Q 024889 107 F 107 (261)
Q Consensus 107 ~ 107 (261)
.
T Consensus 90 a 90 (109)
T 2dnn_A 90 A 90 (109)
T ss_dssp C
T ss_pred C
Confidence 4
No 95
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.75 E-value=2.8e-18 Score=137.65 Aligned_cols=79 Identities=16% Similarity=0.212 Sum_probs=72.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCC---EEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGE---ILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLR 102 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~---I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~ 102 (261)
.+.+.++|||+|||++++|++|+++|++||. |++|+|++|++ |++||||||+|.+.++|++||+ +| ..|+||.+
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 3456789999999999999999999999999 89999999987 9999999999999999999999 88 89999987
Q ss_pred eeeee
Q 024889 103 PATLF 107 (261)
Q Consensus 103 ~v~~~ 107 (261)
+|...
T Consensus 118 ~V~~a 122 (136)
T 2hgl_A 118 EVFKS 122 (136)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 77654
No 96
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.74 E-value=8.3e-19 Score=129.55 Aligned_cols=77 Identities=30% Similarity=0.529 Sum_probs=71.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeeecC
Q 024889 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLFSG 109 (261)
Q Consensus 32 ~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~~~ 109 (261)
++|||+||++++++++|+++|++||.|.+|++++|+.+++++|||||+|.+.+ |++||+.+| ..++|+.+.|+.+..
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 68999999999999999999999999999999999999999999999999999 999999999 899999887776544
No 97
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=127.69 Aligned_cols=76 Identities=18% Similarity=0.186 Sum_probs=68.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCC-----ee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDG-----RL 101 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~G-----r~ 101 (261)
....++|||+||++++++++|+++|++||+|++|+|++| |||||+|.+.++|++||+.|| ..|+| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 456789999999999999999999999999999999886 799999999999999999999 88999 77
Q ss_pred eeeeeecCC
Q 024889 102 RPATLFSGS 110 (261)
Q Consensus 102 ~~v~~~~~~ 110 (261)
++|+.+..+
T Consensus 85 i~V~~a~~~ 93 (108)
T 1x4c_A 85 IRVKVDGPR 93 (108)
T ss_dssp EEEEESSCC
T ss_pred EEEEeCCCC
Confidence 777765543
No 98
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1e-17 Score=128.32 Aligned_cols=76 Identities=18% Similarity=0.232 Sum_probs=67.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC---CccCCeeeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT---PFIDGRLRPA 104 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n---~~i~Gr~~~v 104 (261)
....++|||+||+++++|++|+++|++||.|++|+|+++ ||||||+|.+.++|++||+.++ ..|+|+.+.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 445689999999999999999999999999999998864 7899999999999999999875 3599998887
Q ss_pred eeecC
Q 024889 105 TLFSG 109 (261)
Q Consensus 105 ~~~~~ 109 (261)
.....
T Consensus 86 ~~a~~ 90 (104)
T 1wex_A 86 NYSTS 90 (104)
T ss_dssp EECSS
T ss_pred EEccC
Confidence 76544
No 99
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.74 E-value=9.7e-18 Score=128.65 Aligned_cols=74 Identities=22% Similarity=0.447 Sum_probs=67.0
Q ss_pred CCCCcEEEEcCCCCC-CcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 28 DTTYTKVFVGGLAWE-TQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~-~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
....++|||+||+++ +++++|+++|++||.|++|+| +||||||+|.+.++|++||+.++ ..|+|+.++|+
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 344589999999999 999999999999999999988 47899999999999999999998 89999988887
Q ss_pred eecC
Q 024889 106 LFSG 109 (261)
Q Consensus 106 ~~~~ 109 (261)
+...
T Consensus 96 ~a~~ 99 (110)
T 1wf1_A 96 MAGE 99 (110)
T ss_dssp ESCC
T ss_pred ECCC
Confidence 7653
No 100
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.74 E-value=4.1e-18 Score=123.74 Aligned_cols=71 Identities=20% Similarity=0.361 Sum_probs=65.3
Q ss_pred cEEEEcCCCCCC------cHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCe-eee
Q 024889 32 TKVFVGGLAWET------QSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGR-LRP 103 (261)
Q Consensus 32 ~~vfVgnLp~~~------te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr-~~~ 103 (261)
++|||+|||+++ ++++|+++|++||.|.+|+|++ .+|++||||||+|.+.++|++||+.|| ..|+|+ .++
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 789999999999 7899999999999999999883 579999999999999999999999999 899998 654
Q ss_pred e
Q 024889 104 A 104 (261)
Q Consensus 104 v 104 (261)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 4
No 101
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.3e-18 Score=131.49 Aligned_cols=85 Identities=26% Similarity=0.458 Sum_probs=75.7
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCee
Q 024889 23 NSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRL 101 (261)
Q Consensus 23 ~~~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~ 101 (261)
.....+...++|||+||+.++++++|+++|++||+|++|+|++|+ +++||||||+|.+.++|++||+.+| ..|+|+.
T Consensus 21 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 98 (109)
T 2err_A 21 MNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRK 98 (109)
T ss_dssp -CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEE
T ss_pred CCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 345567778999999999999999999999999999999999985 5699999999999999999999988 8999998
Q ss_pred eeeeeecC
Q 024889 102 RPATLFSG 109 (261)
Q Consensus 102 ~~v~~~~~ 109 (261)
+.|+....
T Consensus 99 l~V~~a~~ 106 (109)
T 2err_A 99 IEVNNATA 106 (109)
T ss_dssp CEEEECCC
T ss_pred EEEEECCC
Confidence 88776543
No 102
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=8.6e-19 Score=132.33 Aligned_cols=81 Identities=20% Similarity=0.266 Sum_probs=72.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
.....++|||+||++++++++|+++|++||.|.+ ++++++.++++||||||+|.+.++|++||+ +| ..|+|+.+.|.
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 4456789999999999999999999999999988 777887789999999999999999999999 88 89999987777
Q ss_pred eecC
Q 024889 106 LFSG 109 (261)
Q Consensus 106 ~~~~ 109 (261)
....
T Consensus 91 ~a~~ 94 (101)
T 1fj7_A 91 KPKG 94 (101)
T ss_dssp CCSC
T ss_pred EcCC
Confidence 6544
No 103
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=6.7e-18 Score=129.01 Aligned_cols=75 Identities=17% Similarity=0.199 Sum_probs=67.2
Q ss_pred CCCcEEEEcCCCC-CCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-C--ccCCeeeee
Q 024889 29 TTYTKVFVGGLAW-ETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-P--FIDGRLRPA 104 (261)
Q Consensus 29 ~~~~~vfVgnLp~-~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~--~i~Gr~~~v 104 (261)
...++|||+||++ +++|++|+++|++||+|++|+|+++ ||||||+|.+.++|++||+.++ . .|+||.+.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3568999999999 9999999999999999999999876 4799999999999999999887 3 499999888
Q ss_pred eeecC
Q 024889 105 TLFSG 109 (261)
Q Consensus 105 ~~~~~ 109 (261)
.....
T Consensus 87 ~~a~~ 91 (102)
T 1x4d_A 87 HLSQK 91 (102)
T ss_dssp EEECC
T ss_pred EECCC
Confidence 77654
No 104
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-18 Score=136.91 Aligned_cols=79 Identities=23% Similarity=0.262 Sum_probs=70.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCE----EEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCCCccCCeeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEI----LEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRLRP 103 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I----~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n~~i~Gr~~~ 103 (261)
....++|||+|||++++|++|+++|++||.| .+|+|++|+ +|++||||||+|.+.++|++||+.....|++|.+.
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEE
Confidence 4567899999999999999999999999976 689999995 79999999999999999999999833889999776
Q ss_pred eeee
Q 024889 104 ATLF 107 (261)
Q Consensus 104 v~~~ 107 (261)
|...
T Consensus 99 V~~a 102 (123)
T 2dha_A 99 LFRS 102 (123)
T ss_dssp CEEE
T ss_pred EEEC
Confidence 6554
No 105
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.73 E-value=3.8e-18 Score=130.60 Aligned_cols=79 Identities=11% Similarity=0.238 Sum_probs=72.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCC---EEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGE---ILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLR 102 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~---I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~ 102 (261)
.....++|||+||++++++++|+++|+.||. |.+|+|++|+. |++||||||+|.+.++|++||+ ++ ..|+||.+
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 4456789999999999999999999999998 89999999987 9999999999999999999999 77 88999987
Q ss_pred eeeee
Q 024889 103 PATLF 107 (261)
Q Consensus 103 ~v~~~ 107 (261)
+|...
T Consensus 85 ~V~~a 89 (107)
T 2lmi_A 85 EVYEI 89 (107)
T ss_dssp CCEEC
T ss_pred EEEEC
Confidence 76654
No 106
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.73 E-value=4.5e-18 Score=128.58 Aligned_cols=83 Identities=30% Similarity=0.523 Sum_probs=74.1
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCCCccCCeeeee
Q 024889 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRLRPA 104 (261)
Q Consensus 25 ~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n~~i~Gr~~~v 104 (261)
+..+...++|||+||++++++++|+++|++||.|.+|+|++|+ ++++||||||+|.+.++|++||+ ....|+|+.+.|
T Consensus 3 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v 80 (102)
T 2xs2_A 3 PEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKL 80 (102)
T ss_dssp CCCEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEE
Confidence 4455677999999999999999999999999999999999998 89999999999999999999999 338899998776
Q ss_pred eeecC
Q 024889 105 TLFSG 109 (261)
Q Consensus 105 ~~~~~ 109 (261)
.....
T Consensus 81 ~~a~~ 85 (102)
T 2xs2_A 81 GPAIR 85 (102)
T ss_dssp EEEEE
T ss_pred EECCc
Confidence 66543
No 107
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.73 E-value=8.8e-18 Score=133.10 Aligned_cols=79 Identities=23% Similarity=0.301 Sum_probs=70.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEE--EEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCCCccCCeeeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEIL--EAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRLRPA 104 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~--~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n~~i~Gr~~~v 104 (261)
.....++|||+|||++++|++|+++|++| .|+ +|+|++|++ |++||||||+|.+.++|++||+.++..|+||.+.|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEE
Confidence 34456899999999999999999999999 777 899999987 99999999999999999999997669999998776
Q ss_pred eee
Q 024889 105 TLF 107 (261)
Q Consensus 105 ~~~ 107 (261)
...
T Consensus 116 ~~a 118 (126)
T 2hgm_A 116 FKS 118 (126)
T ss_dssp EEE
T ss_pred EEC
Confidence 654
No 108
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.73 E-value=1.6e-17 Score=138.13 Aligned_cols=86 Identities=36% Similarity=0.614 Sum_probs=77.2
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCCCccCCeeeee
Q 024889 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRLRPA 104 (261)
Q Consensus 25 ~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n~~i~Gr~~~v 104 (261)
+......++|||+|||++++|++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+..+..|+|+.+.+
T Consensus 7 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v 86 (196)
T 1l3k_A 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEP 86 (196)
T ss_dssp -CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeee
Confidence 44566789999999999999999999999999999999999999999999999999999999999998558999998887
Q ss_pred eeecCC
Q 024889 105 TLFSGS 110 (261)
Q Consensus 105 ~~~~~~ 110 (261)
......
T Consensus 87 ~~~~~~ 92 (196)
T 1l3k_A 87 KRAVSR 92 (196)
T ss_dssp EECCC-
T ss_pred ecccCc
Confidence 765443
No 109
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.73 E-value=1.7e-17 Score=136.53 Aligned_cols=87 Identities=24% Similarity=0.265 Sum_probs=78.1
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeee
Q 024889 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRP 103 (261)
Q Consensus 25 ~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~ 103 (261)
+......++|||+||++++++++|+++|++||.|.+|.|++++.+++++|||||+|.+.++|++||+.|| ..|+|+.+.
T Consensus 66 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 66 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 145 (165)
T ss_dssp CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3345567899999999999999999999999999999999999999999999999999999999999999 889999888
Q ss_pred eeeecCCC
Q 024889 104 ATLFSGST 111 (261)
Q Consensus 104 v~~~~~~~ 111 (261)
|.+.....
T Consensus 146 V~~a~~~~ 153 (165)
T 1rk8_A 146 VDWCFVKG 153 (165)
T ss_dssp EEESEECC
T ss_pred EEEecCCC
Confidence 87765543
No 110
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.8e-17 Score=123.13 Aligned_cols=76 Identities=22% Similarity=0.402 Sum_probs=67.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccC--Ceeeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFID--GRLRPA 104 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~--Gr~~~v 104 (261)
....++|||+||+++++|++|+++|++||.|++|+++++ ||||||+|.+.++|++||+.+| ..|+ |+.+.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 345689999999999999999999999999999999764 7899999999999999999998 8899 887777
Q ss_pred eeecC
Q 024889 105 TLFSG 109 (261)
Q Consensus 105 ~~~~~ 109 (261)
++...
T Consensus 88 ~~a~~ 92 (97)
T 1why_A 88 DFAKS 92 (97)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 76544
No 111
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.72 E-value=9.5e-18 Score=127.96 Aligned_cols=81 Identities=21% Similarity=0.363 Sum_probs=72.1
Q ss_pred CCCCCCcEEEEcCCCCCC------cHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccC
Q 024889 26 FGDTTYTKVFVGGLAWET------QSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFID 98 (261)
Q Consensus 26 ~~~~~~~~vfVgnLp~~~------te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~ 98 (261)
..+...++|||+|||+.+ ++++|+++|++||.|.+|+|+ +.+|++||||||+|.+.++|++||+.|| ..|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 10 EADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp SCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 345557899999999999 789999999999999999988 3579999999999999999999999999 8899
Q ss_pred Ce-eeeeeeec
Q 024889 99 GR-LRPATLFS 108 (261)
Q Consensus 99 Gr-~~~v~~~~ 108 (261)
|+ .++|.+..
T Consensus 88 g~~~l~V~~a~ 98 (105)
T 2nlw_A 88 KQHTFRVNLFT 98 (105)
T ss_dssp TTCEEEEECSC
T ss_pred CCceEEEEEcc
Confidence 98 87776654
No 112
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.72 E-value=1.5e-17 Score=141.78 Aligned_cols=97 Identities=24% Similarity=0.337 Sum_probs=81.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeee
Q 024889 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLF 107 (261)
Q Consensus 29 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~ 107 (261)
...++|||+|||++++|++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.+| ..+.|+.+++...
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 345799999999999999999999999999999999999999999999999999999999999999 8899998776654
Q ss_pred cCCCC----CCCCCCcCCCCCC
Q 024889 108 SGSTQ----ATRGPYIGSFGYQ 125 (261)
Q Consensus 108 ~~~~~----~~r~~~~~~~~~~ 125 (261)
..... ..+.+++++++..
T Consensus 93 ~~~~~~~~~~~~~l~v~nl~~~ 114 (213)
T 4f02_A 93 QRDPSLRKSGVGNIFIKNLDKS 114 (213)
T ss_dssp CCCTHHHHHCTTEEEEESCCTT
T ss_pred cccccccccccccceECCcccc
Confidence 43321 2245677776653
No 113
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.2e-17 Score=124.21 Aligned_cols=76 Identities=26% Similarity=0.426 Sum_probs=68.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATL 106 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~ 106 (261)
....++|||+||++++++++|+++|++||.|++|+++++ ||||||+|.+.++|++||+.++ ..|+|+.+.|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 456689999999999999999999999999999999865 6899999999999999999999 899999877776
Q ss_pred ecC
Q 024889 107 FSG 109 (261)
Q Consensus 107 ~~~ 109 (261)
...
T Consensus 86 a~~ 88 (99)
T 2cpj_A 86 ACH 88 (99)
T ss_dssp SSC
T ss_pred cCC
Confidence 543
No 114
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.72 E-value=3e-18 Score=138.03 Aligned_cols=80 Identities=21% Similarity=0.245 Sum_probs=69.5
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeee
Q 024889 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPA 104 (261)
Q Consensus 26 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v 104 (261)
......++|||+|||++++|++|+++|++|| |++|+|++|++ +++||||||+|.+.++|++|| .+| ..|+||.++|
T Consensus 41 ~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V 117 (139)
T 2hgn_A 41 VQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIEL 117 (139)
T ss_dssp ----CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEE
Confidence 3455678999999999999999999999999 77999999986 999999999999999999999 667 8999998776
Q ss_pred eeec
Q 024889 105 TLFS 108 (261)
Q Consensus 105 ~~~~ 108 (261)
.+..
T Consensus 118 ~~a~ 121 (139)
T 2hgn_A 118 FLNS 121 (139)
T ss_dssp EECC
T ss_pred EECC
Confidence 6543
No 115
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.56 E-value=4.3e-19 Score=137.52 Aligned_cols=84 Identities=26% Similarity=0.381 Sum_probs=76.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEE--------EEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-Ccc
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE--------AVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFI 97 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~--------v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i 97 (261)
++...++|||+||++++++++|+++|++||.|.+ |+|++|+.++++||||||+|.+.++|++||+.|| ..|
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 3556789999999999999999999999999999 9999998899999999999999999999999999 899
Q ss_pred CCeeeeeeeecCC
Q 024889 98 DGRLRPATLFSGS 110 (261)
Q Consensus 98 ~Gr~~~v~~~~~~ 110 (261)
+|+.+.|++...+
T Consensus 83 ~g~~l~V~~a~~~ 95 (116)
T 2lcw_A 83 SGNPIKVSFATRR 95 (116)
Confidence 9998777766544
No 116
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.7e-17 Score=128.83 Aligned_cols=76 Identities=14% Similarity=0.204 Sum_probs=67.1
Q ss_pred CCCCcEEEEcCCCCC-CcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC---CccCCeeee
Q 024889 28 DTTYTKVFVGGLAWE-TQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT---PFIDGRLRP 103 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~-~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n---~~i~Gr~~~ 103 (261)
....++|||+||+++ ++|++|+++|++||+|++|+|+++ ||||||+|.+.++|++||+.++ ..|+||.+.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 445789999999998 999999999999999999999753 7899999999999999999875 469999888
Q ss_pred eeeecC
Q 024889 104 ATLFSG 109 (261)
Q Consensus 104 v~~~~~ 109 (261)
|.....
T Consensus 96 V~~a~~ 101 (112)
T 1x4f_A 96 VDLSEK 101 (112)
T ss_dssp EEEECS
T ss_pred EEECcc
Confidence 877644
No 117
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.2e-17 Score=128.80 Aligned_cols=86 Identities=17% Similarity=0.182 Sum_probs=71.5
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeee
Q 024889 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPA 104 (261)
Q Consensus 26 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v 104 (261)
......++|||+||++++++++|+++|++||.|.+|.+..+..+++++|||||+|.+.++|++||+.|| ..|+|+.+.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 20 NPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp CCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 344567899999999999999999999999999544333222268999999999999999999999999 8999998888
Q ss_pred eeecCCC
Q 024889 105 TLFSGST 111 (261)
Q Consensus 105 ~~~~~~~ 111 (261)
.+...+.
T Consensus 100 ~~a~~~~ 106 (115)
T 2cpx_A 100 EFGKNKK 106 (115)
T ss_dssp EECCCCS
T ss_pred EEccCCC
Confidence 7765543
No 118
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.9e-17 Score=123.17 Aligned_cols=78 Identities=15% Similarity=0.262 Sum_probs=68.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
.....++|||+||++++++++|+++|++||.|. ++++.+ +++|||||+|.+.++|++||+.|| ..|+|+.+.|+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 455678999999999999999999999999997 666654 678999999999999999999999 89999988877
Q ss_pred eecC
Q 024889 106 LFSG 109 (261)
Q Consensus 106 ~~~~ 109 (261)
+...
T Consensus 90 ~a~~ 93 (97)
T 2e5j_A 90 LARQ 93 (97)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 6544
No 119
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.7e-17 Score=120.28 Aligned_cols=75 Identities=29% Similarity=0.483 Sum_probs=67.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATL 106 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~ 106 (261)
+...++|||+||++++++++|+++|++||.|++|+|+ ||||||+|.+.++|++||+.+| ..|+|+.++|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3456899999999999999999999999999999997 5799999999999999999999 889999877776
Q ss_pred ecCC
Q 024889 107 FSGS 110 (261)
Q Consensus 107 ~~~~ 110 (261)
...+
T Consensus 77 a~~~ 80 (90)
T 2dnq_A 77 SKNK 80 (90)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 5543
No 120
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.72 E-value=7.9e-18 Score=130.51 Aligned_cols=78 Identities=13% Similarity=0.034 Sum_probs=69.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCC-CEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G-~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
....++|||+||++++++++|+++|++|| +|+.++|.. .+++|||||+|.+.++|++||+.|| ..|+|+.++|+
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 44568999999999999999999999999 999998854 3579999999999999999999999 89999988887
Q ss_pred eecC
Q 024889 106 LFSG 109 (261)
Q Consensus 106 ~~~~ 109 (261)
+...
T Consensus 101 ~a~~ 104 (111)
T 2jvr_A 101 RDDN 104 (111)
T ss_dssp ESCC
T ss_pred ECCC
Confidence 7654
No 121
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.71 E-value=1.7e-17 Score=127.48 Aligned_cols=79 Identities=22% Similarity=0.382 Sum_probs=68.4
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCee
Q 024889 23 NSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRL 101 (261)
Q Consensus 23 ~~~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~ 101 (261)
.....+...++|||+||++++++++|+++|++||.|++|+|+ ||||||+|.+.++|++||+.+| ..|+|+.
T Consensus 23 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 94 (108)
T 2jvo_A 23 HRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQP 94 (108)
T ss_dssp -----CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred cccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 345667788999999999999999999999999999999997 6899999999999999999988 8999998
Q ss_pred eeeeeecC
Q 024889 102 RPATLFSG 109 (261)
Q Consensus 102 ~~v~~~~~ 109 (261)
+.|.+...
T Consensus 95 l~V~~a~~ 102 (108)
T 2jvo_A 95 LEVVYSKL 102 (108)
T ss_dssp CEEESCSC
T ss_pred EEEEEecC
Confidence 77776544
No 122
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.8e-17 Score=118.59 Aligned_cols=76 Identities=29% Similarity=0.428 Sum_probs=68.3
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcC-C-CccCCeee
Q 024889 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-T-PFIDGRLR 102 (261)
Q Consensus 25 ~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~-n-~~i~Gr~~ 102 (261)
+..+...++|||+||++++++++|+++|++||.|.+|+++++ ||||||+|.+.++|++||+.+ + ..++|+.+
T Consensus 6 ~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l 79 (85)
T 2ytc_A 6 SGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRL 79 (85)
T ss_dssp CCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEEC
T ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEE
Confidence 334567799999999999999999999999999999999874 789999999999999999988 7 88999987
Q ss_pred eeee
Q 024889 103 PATL 106 (261)
Q Consensus 103 ~v~~ 106 (261)
+|+.
T Consensus 80 ~v~~ 83 (85)
T 2ytc_A 80 NVKW 83 (85)
T ss_dssp CEEE
T ss_pred EEEe
Confidence 7665
No 123
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.3e-17 Score=131.90 Aligned_cols=78 Identities=19% Similarity=0.225 Sum_probs=70.1
Q ss_pred cEEEEcCC----CCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcC----HHH----HHHHHh--cCC-Cc
Q 024889 32 TKVFVGGL----AWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRE----PEA----ARRACA--DPT-PF 96 (261)
Q Consensus 32 ~~vfVgnL----p~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~----~~~----A~~Ai~--~~n-~~ 96 (261)
++|||+|| ++.++|++|+++|++||+|.+|+++.|++||+++|||||+|.| .++ |.+||+ .++ ..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 79999999 9999999999999999999999999999999999999999996 333 899998 778 89
Q ss_pred cCCeeeeeeeecC
Q 024889 97 IDGRLRPATLFSG 109 (261)
Q Consensus 97 i~Gr~~~v~~~~~ 109 (261)
|+|+.++|.+...
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999998887543
No 124
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.71 E-value=1.4e-17 Score=123.46 Aligned_cols=71 Identities=14% Similarity=0.124 Sum_probs=66.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeee
Q 024889 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLF 107 (261)
Q Consensus 31 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~ 107 (261)
...|||+||++.+||++|+++|.+||+|+++++.. +||||||+|.++++|++||+.|| .+|+||.++|+.+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 46899999999999999999999999999999965 58999999999999999999999 8999999888765
No 125
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.5e-17 Score=128.37 Aligned_cols=78 Identities=14% Similarity=0.183 Sum_probs=69.2
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC---CccCCeee
Q 024889 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT---PFIDGRLR 102 (261)
Q Consensus 26 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n---~~i~Gr~~ 102 (261)
......++|||+||+++++|++|+++|++||.|++|+|+++ ||||||+|.+.++|++||+.++ ..|+|+.+
T Consensus 26 ~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 26 SAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp SCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 34456789999999999999999999999999999999876 7899999999999999999876 47999988
Q ss_pred eeeeecC
Q 024889 103 PATLFSG 109 (261)
Q Consensus 103 ~v~~~~~ 109 (261)
.|.....
T Consensus 100 ~V~~a~~ 106 (119)
T 2ad9_A 100 YIQFSNH 106 (119)
T ss_dssp EEEECSS
T ss_pred EEEEccC
Confidence 8777544
No 126
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=4.6e-17 Score=129.03 Aligned_cols=80 Identities=18% Similarity=0.203 Sum_probs=70.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHH----HHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMR----RYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLR 102 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~----~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~ 102 (261)
....++|||+||++++++++|+ ++|++||.|++|.+.+ ++++||||||+|.+.++|++||+.|| ..|+|+.+
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3456899999999999999876 6999999999998754 58899999999999999999999999 89999988
Q ss_pred eeeeecCC
Q 024889 103 PATLFSGS 110 (261)
Q Consensus 103 ~v~~~~~~ 110 (261)
+|.+...+
T Consensus 103 ~V~~a~~~ 110 (127)
T 2a3j_A 103 VITFSETP 110 (127)
T ss_dssp EEEECCCC
T ss_pred EEEEccCc
Confidence 87775543
No 127
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.7e-17 Score=124.11 Aligned_cols=78 Identities=31% Similarity=0.488 Sum_probs=70.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
.+...++|||+||++++++++|+++|++||.|.+|+|+++ ||||||+|.+.++|++||+.|+ ..|+|+.++|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4566789999999999999999999999999999999876 7899999999999999999998 89999988777
Q ss_pred eecCC
Q 024889 106 LFSGS 110 (261)
Q Consensus 106 ~~~~~ 110 (261)
+...+
T Consensus 95 ~a~~~ 99 (109)
T 1x4g_A 95 WGKES 99 (109)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 65543
No 128
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=8.4e-17 Score=119.38 Aligned_cols=76 Identities=24% Similarity=0.411 Sum_probs=68.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
.....++|||+||++++++++|+++|++||.|++|+++++ ||||+|.+.++|++||+.+| ..|+|+.++|+
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 4556799999999999999999999999999999999754 99999999999999999999 89999988888
Q ss_pred eecCC
Q 024889 106 LFSGS 110 (261)
Q Consensus 106 ~~~~~ 110 (261)
+...+
T Consensus 78 ~a~~~ 82 (92)
T 2dgt_A 78 LSTSR 82 (92)
T ss_dssp ESSCC
T ss_pred EccCC
Confidence 76554
No 129
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.69 E-value=6.6e-17 Score=123.02 Aligned_cols=77 Identities=19% Similarity=0.191 Sum_probs=67.1
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-Cc--cCCeee
Q 024889 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PF--IDGRLR 102 (261)
Q Consensus 26 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~--i~Gr~~ 102 (261)
......++|||+|||++++|++|+++|++||.|++|+++++ ||||||+|.+.++|++||+.++ .. |+||.+
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 34456789999999999999999999999999999999854 6899999999999999999988 43 889987
Q ss_pred eeeeec
Q 024889 103 PATLFS 108 (261)
Q Consensus 103 ~v~~~~ 108 (261)
.|....
T Consensus 90 ~V~~S~ 95 (100)
T 3r27_A 90 FVNYST 95 (100)
T ss_dssp EEEECS
T ss_pred EEEecc
Confidence 777643
No 130
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.3e-16 Score=118.20 Aligned_cols=76 Identities=18% Similarity=0.306 Sum_probs=66.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
.....++|||+|| ++++++|+++|++||+|++|+|. ++||||||+|.+.++|++||+.|| ..|+|+.+.|.
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3446689999996 89999999999999999999984 568899999999999999999999 88999987777
Q ss_pred eecCC
Q 024889 106 LFSGS 110 (261)
Q Consensus 106 ~~~~~ 110 (261)
+...+
T Consensus 83 ~a~~~ 87 (97)
T 1x5p_A 83 IARKQ 87 (97)
T ss_dssp CCSSC
T ss_pred ECCCC
Confidence 65443
No 131
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.69 E-value=4.1e-17 Score=123.01 Aligned_cols=75 Identities=25% Similarity=0.432 Sum_probs=68.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeeecCC
Q 024889 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLFSGS 110 (261)
Q Consensus 32 ~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~~~~ 110 (261)
++|||+||++++++++|+++|++||+|++|+++++ ++|||||+|.+.++|++||+.++ ..++|+.+.|++....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999887 68999999999999999999999 8999998888776554
Q ss_pred C
Q 024889 111 T 111 (261)
Q Consensus 111 ~ 111 (261)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 132
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.69 E-value=1.3e-16 Score=120.90 Aligned_cols=76 Identities=21% Similarity=0.336 Sum_probs=68.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATL 106 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~ 106 (261)
....++|||+||++++++++|+++|++||.|++|+|++ +||||+|.+.++|++||+.|| ..|+|+.+.|++
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 34568999999999999999999999999999999874 499999999999999999988 899999888887
Q ss_pred ecCCC
Q 024889 107 FSGST 111 (261)
Q Consensus 107 ~~~~~ 111 (261)
.....
T Consensus 80 a~~~~ 84 (103)
T 2dgu_A 80 AKPPD 84 (103)
T ss_dssp CCCCC
T ss_pred cCCCc
Confidence 66543
No 133
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=2.1e-16 Score=117.73 Aligned_cols=73 Identities=21% Similarity=0.361 Sum_probs=65.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeeec
Q 024889 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLFS 108 (261)
Q Consensus 30 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~~ 108 (261)
..++|||+||++++++++|+++|++||.|.+| +.++.+++ ||||+|.+.++|++||+ +| ..|+|+.+.|+...
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 45799999999999999999999999999987 66666666 99999999999999999 88 89999987776543
No 134
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.69 E-value=6.9e-17 Score=134.84 Aligned_cols=81 Identities=27% Similarity=0.368 Sum_probs=75.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATL 106 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~ 106 (261)
....++|||+||++++++++|+++|++||.|++|+|+.|+ +++++|||||+|.+.++|++||+.+| ..|+|+.+.|++
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999998 89999999999999999999999999 899999888887
Q ss_pred ecC
Q 024889 107 FSG 109 (261)
Q Consensus 107 ~~~ 109 (261)
...
T Consensus 164 a~~ 166 (177)
T 2f3j_A 164 VAS 166 (177)
T ss_dssp ESS
T ss_pred ecC
Confidence 654
No 135
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=5.4e-17 Score=122.37 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=66.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATL 106 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~ 106 (261)
+...++|||+||++++++++|+++|++||.|++|+++ ++||||||+|.+.++|++||+.+| ..|+|+.++|+.
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 4456899999999999999999999999999999997 357899999999999999999998 899999766655
Q ss_pred e
Q 024889 107 F 107 (261)
Q Consensus 107 ~ 107 (261)
.
T Consensus 98 a 98 (101)
T 2la4_A 98 G 98 (101)
T ss_dssp C
T ss_pred c
Confidence 3
No 136
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.68 E-value=1.4e-16 Score=128.63 Aligned_cols=94 Identities=26% Similarity=0.383 Sum_probs=81.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeeecC
Q 024889 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLFSG 109 (261)
Q Consensus 31 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~~~ 109 (261)
.++|||+|||+++++++|+++|++||.|.++++++++.+++++|||||+|.+.++|++||+.++ ..++|+.+.+.....
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 4799999999999999999999999999999999999899999999999999999999999888 899999888776554
Q ss_pred CCC--CCCCCCcCCCCC
Q 024889 110 STQ--ATRGPYIGSFGY 124 (261)
Q Consensus 110 ~~~--~~r~~~~~~~~~ 124 (261)
... ..+..++++++.
T Consensus 82 ~~~~~~~~~l~v~nl~~ 98 (167)
T 1fxl_A 82 SSASIRDANLYVSGLPK 98 (167)
T ss_dssp CCGGGTTCEEEEESCCT
T ss_pred CcccCCCCcEEECCCCC
Confidence 322 224456666654
No 137
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=4.1e-17 Score=126.18 Aligned_cols=74 Identities=26% Similarity=0.393 Sum_probs=66.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCC---CCcceEEEEEEcCHHHHHHHHhcCCCccCCeeeeee
Q 024889 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNT---GRSKGYGFVTFREPEAARRACADPTPFIDGRLRPAT 105 (261)
Q Consensus 30 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~t---g~skG~gFV~F~~~~~A~~Ai~~~n~~i~Gr~~~v~ 105 (261)
..++|||+||+++++|++|+++|++||.|. ++++.++.+ |++||||||+|.+.++|++||+.++ .++|+.+.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~-~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL-EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE-EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh-hcCCcEEEec
Confidence 458999999999999999999999999999 888888777 7999999999999999999999884 4788865544
No 138
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=118.95 Aligned_cols=77 Identities=18% Similarity=0.162 Sum_probs=68.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEE-EEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeee
Q 024889 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEA-VVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATL 106 (261)
Q Consensus 29 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v-~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~ 106 (261)
...++|||+||++++++++|+++|++||.|++| .|++++.+++ |||+|.+.++|++||+.+| ..|+|+.++|+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356899999999999999999999999999999 5888876444 9999999999999999999 899999888776
Q ss_pred ecC
Q 024889 107 FSG 109 (261)
Q Consensus 107 ~~~ 109 (261)
...
T Consensus 89 a~~ 91 (96)
T 2e44_A 89 IPD 91 (96)
T ss_dssp CCC
T ss_pred cCc
Confidence 554
No 139
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.68 E-value=1.1e-16 Score=129.80 Aligned_cols=95 Identities=19% Similarity=0.265 Sum_probs=81.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeeec
Q 024889 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLFS 108 (261)
Q Consensus 30 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~~ 108 (261)
..++|||+|||+++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++||+.++ ..++|+.+.+....
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 35899999999999999999999999999999999999899999999999999999999999888 88999988777654
Q ss_pred CCCC--CCCCCCcCCCCC
Q 024889 109 GSTQ--ATRGPYIGSFGY 124 (261)
Q Consensus 109 ~~~~--~~r~~~~~~~~~ 124 (261)
.... ..+..++++++.
T Consensus 82 ~~~~~~~~~~l~v~nl~~ 99 (168)
T 1b7f_A 82 PGGESIKDTNLYVTNLPR 99 (168)
T ss_dssp CCSSTTTTCEEEEESCCT
T ss_pred CCcccCCCCCEEEeCCCC
Confidence 4322 224455666654
No 140
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.6e-16 Score=117.42 Aligned_cols=76 Identities=26% Similarity=0.421 Sum_probs=68.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
.+...++|||+||++++++++|+++|++||.|.+|+|+++ ||||+|.+.++|++||+.+| ..|+|+.+.|+
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4556789999999999999999999999999999999754 99999999999999999998 89999988887
Q ss_pred eecCC
Q 024889 106 LFSGS 110 (261)
Q Consensus 106 ~~~~~ 110 (261)
+....
T Consensus 77 ~a~~~ 81 (90)
T 2dnp_A 77 LSTKG 81 (90)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 76543
No 141
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.68 E-value=1.5e-16 Score=122.66 Aligned_cols=78 Identities=15% Similarity=0.292 Sum_probs=70.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeee
Q 024889 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLF 107 (261)
Q Consensus 29 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~ 107 (261)
...++|||+|||+++++++|+++|++||.|.+|.|+++ ++++|||||+|.+.++|++||+.+| ..|+|+.+.|...
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 45689999999999999999999999999999999986 5569999999999999999999999 8999998887765
Q ss_pred cC
Q 024889 108 SG 109 (261)
Q Consensus 108 ~~ 109 (261)
..
T Consensus 83 ~~ 84 (115)
T 3lqv_A 83 NA 84 (115)
T ss_dssp CH
T ss_pred cC
Confidence 43
No 142
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=1e-16 Score=119.65 Aligned_cols=78 Identities=19% Similarity=0.315 Sum_probs=69.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
.+...++|||+||++++++++|+++|++||.|..+ ..+++++|||||+|.+.++|++||+.++ ..|+|+.+.|.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 45567999999999999999999999999988766 2368999999999999999999999999 89999988877
Q ss_pred eecC
Q 024889 106 LFSG 109 (261)
Q Consensus 106 ~~~~ 109 (261)
+...
T Consensus 87 ~a~~ 90 (96)
T 1fjc_A 87 YTGE 90 (96)
T ss_dssp ECSS
T ss_pred EcCC
Confidence 7544
No 143
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.67 E-value=2.3e-16 Score=131.10 Aligned_cols=85 Identities=27% Similarity=0.545 Sum_probs=74.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCCCccCCeeeeeeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRLRPATLF 107 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n~~i~Gr~~~v~~~ 107 (261)
....++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|.+||+.++..|+|+.+.|...
T Consensus 101 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 101 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180 (196)
T ss_dssp --CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEEC
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEec
Confidence 44568999999999999999999999999999999999998999999999999999999999998559999998888776
Q ss_pred cCCCC
Q 024889 108 SGSTQ 112 (261)
Q Consensus 108 ~~~~~ 112 (261)
..+..
T Consensus 181 ~~k~~ 185 (196)
T 1l3k_A 181 LSKQE 185 (196)
T ss_dssp C----
T ss_pred CChhH
Confidence 55433
No 144
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.5e-16 Score=119.14 Aligned_cols=77 Identities=21% Similarity=0.426 Sum_probs=67.7
Q ss_pred CCCCCcEEEEcCCCC-CCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeee
Q 024889 27 GDTTYTKVFVGGLAW-ETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPA 104 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~-~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v 104 (261)
.....++|||+||++ ++++++|+++|++||.|.+|+|. ||||||+|.+.++|++||+.+| ..++|+.+.|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345678999999998 99999999999999999999984 6899999999999999999988 8899998888
Q ss_pred eeecCCC
Q 024889 105 TLFSGST 111 (261)
Q Consensus 105 ~~~~~~~ 111 (261)
++.....
T Consensus 78 ~~a~~~~ 84 (96)
T 2kvi_A 78 EVSSSNA 84 (96)
T ss_dssp EEEECCC
T ss_pred EEcCcCC
Confidence 8876543
No 145
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.66 E-value=9.3e-17 Score=119.94 Aligned_cols=79 Identities=18% Similarity=0.298 Sum_probs=70.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHH----HHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMR----RYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLR 102 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~----~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~ 102 (261)
....++|||+||++++++++|+ ++|++||.|.+|++++ +++++|||||+|.+.++|++||+.+| ..|+|+.+
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4456899999999999999999 9999999999999874 48889999999999999999999988 88999988
Q ss_pred eeeeecC
Q 024889 103 PATLFSG 109 (261)
Q Consensus 103 ~v~~~~~ 109 (261)
.|.....
T Consensus 82 ~v~~a~~ 88 (97)
T 1nu4_A 82 RIQYAKT 88 (97)
T ss_dssp EEEECSS
T ss_pred EEEEccC
Confidence 7776544
No 146
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.66 E-value=1.7e-16 Score=128.24 Aligned_cols=80 Identities=24% Similarity=0.348 Sum_probs=71.8
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeee
Q 024889 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRP 103 (261)
Q Consensus 25 ~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~ 103 (261)
.......++|||+||++++++++|+++|++||.|++|+|++| +||||||+|.+.++|++||+.+| ..|+|+.+.
T Consensus 67 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 141 (150)
T 2i2y_A 67 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVR 141 (150)
T ss_dssp SSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 344567799999999999999999999999999999999887 58999999999999999999988 889999888
Q ss_pred eeeecC
Q 024889 104 ATLFSG 109 (261)
Q Consensus 104 v~~~~~ 109 (261)
|++...
T Consensus 142 v~~a~~ 147 (150)
T 2i2y_A 142 VELSNG 147 (150)
T ss_dssp EEECCC
T ss_pred EEEcCC
Confidence 776543
No 147
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.66 E-value=3.3e-16 Score=117.85 Aligned_cols=76 Identities=22% Similarity=0.468 Sum_probs=67.0
Q ss_pred CCCCCCcEEEEcCCCC-CCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeee
Q 024889 26 FGDTTYTKVFVGGLAW-ETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRP 103 (261)
Q Consensus 26 ~~~~~~~~vfVgnLp~-~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~ 103 (261)
......++|||+||++ ++++++|+++|++||.|.+|+|. ||||||+|.+.++|++||+.+| ..++|+.++
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3455679999999998 99999999999999999999883 7899999999999999999998 889999888
Q ss_pred eeeecC
Q 024889 104 ATLFSG 109 (261)
Q Consensus 104 v~~~~~ 109 (261)
|++...
T Consensus 89 V~~a~~ 94 (97)
T 2xnq_A 89 LEVSSS 94 (97)
T ss_dssp EEECCC
T ss_pred EEecCC
Confidence 776543
No 148
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.66 E-value=4.9e-16 Score=125.29 Aligned_cols=81 Identities=31% Similarity=0.482 Sum_probs=75.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
.....++|||+||+.++++++|+++|++||.|.++++++|+.+++++|||||+|.+.++|++||+.+| ..|+|+.+.|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 45567899999999999999999999999999999999999899999999999999999999999999 89999987776
Q ss_pred ee
Q 024889 106 LF 107 (261)
Q Consensus 106 ~~ 107 (261)
++
T Consensus 163 ~a 164 (166)
T 3md3_A 163 WA 164 (166)
T ss_dssp ES
T ss_pred ec
Confidence 54
No 149
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.66 E-value=4.9e-16 Score=131.08 Aligned_cols=82 Identities=21% Similarity=0.472 Sum_probs=75.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeee
Q 024889 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLF 107 (261)
Q Consensus 29 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~ 107 (261)
...++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|.+||+.+| ..|+|+.+.|...
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 445899999999999999999999999999999999999899999999999999999999999999 8999998887765
Q ss_pred cCC
Q 024889 108 SGS 110 (261)
Q Consensus 108 ~~~ 110 (261)
...
T Consensus 203 ~~~ 205 (216)
T 2qfj_A 203 VTP 205 (216)
T ss_dssp SSC
T ss_pred cCC
Confidence 543
No 150
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.66 E-value=4.8e-16 Score=146.76 Aligned_cols=83 Identities=24% Similarity=0.503 Sum_probs=77.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATL 106 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~ 106 (261)
....++|||+||++++++++|+++|++||.|++|+|+.|+.+++++|||||+|.+.++|++||+.|| ..|+|+.+.|.+
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3455899999999999999999999999999999999999899999999999999999999999999 999999988887
Q ss_pred ecCC
Q 024889 107 FSGS 110 (261)
Q Consensus 107 ~~~~ 110 (261)
....
T Consensus 179 a~~~ 182 (437)
T 3pgw_S 179 ERGR 182 (437)
T ss_pred eCCC
Confidence 7653
No 151
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.65 E-value=2.5e-16 Score=132.91 Aligned_cols=81 Identities=30% Similarity=0.426 Sum_probs=71.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATL 106 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~ 106 (261)
....++|||+|||++++|++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.++ ..|+|+.+.|..
T Consensus 25 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 104 (216)
T 2qfj_A 25 LAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 104 (216)
T ss_dssp HHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEEC
T ss_pred cCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEec
Confidence 3456899999999999999999999999999999999999899999999999999999999999888 889999877755
Q ss_pred ec
Q 024889 107 FS 108 (261)
Q Consensus 107 ~~ 108 (261)
..
T Consensus 105 ~~ 106 (216)
T 2qfj_A 105 PS 106 (216)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 152
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.65 E-value=1.4e-16 Score=123.58 Aligned_cols=67 Identities=21% Similarity=0.238 Sum_probs=60.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRL 101 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~ 101 (261)
....++|||+||+++++|++|+++|++||+|++|+|++| |||||+|.+.++|++||+.|| ..|+|+.
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 345689999999999999999999999999999999876 899999999999999999999 8999986
No 153
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=2.2e-16 Score=121.79 Aligned_cols=77 Identities=17% Similarity=0.137 Sum_probs=68.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATL 106 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~ 106 (261)
+...++|||+||++++++++|+++|++||.|.+|.|++ +||||||+|.+.++|++||+.|| ..|+|+.+.|.+
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 80 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEW 80 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 33468999999999999999999999999999998864 47899999999999999999999 899999888877
Q ss_pred ecCC
Q 024889 107 FSGS 110 (261)
Q Consensus 107 ~~~~ 110 (261)
....
T Consensus 81 a~~~ 84 (111)
T 1whx_A 81 APIG 84 (111)
T ss_dssp EETT
T ss_pred CCCC
Confidence 6543
No 154
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=9.2e-16 Score=115.23 Aligned_cols=77 Identities=23% Similarity=0.310 Sum_probs=67.8
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcC--CCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeee
Q 024889 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQF--GEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLR 102 (261)
Q Consensus 26 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~--G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~ 102 (261)
......++|||+||++++++++|+++|++| |.|.+|++. ||||||+|.+.++|++||+.+| ..|+|+.+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 345567899999999999999999999999 999999874 5699999999999999999999 89999988
Q ss_pred eeeeecCC
Q 024889 103 PATLFSGS 110 (261)
Q Consensus 103 ~v~~~~~~ 110 (261)
.|.+...+
T Consensus 82 ~v~~a~~~ 89 (99)
T 2cpd_A 82 EVTLAKPV 89 (99)
T ss_dssp EEECCCCC
T ss_pred EEEECCCC
Confidence 77765543
No 155
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.3e-16 Score=117.13 Aligned_cols=75 Identities=19% Similarity=0.363 Sum_probs=64.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCC-EEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC--CccCCeeeeee
Q 024889 29 TTYTKVFVGGLAWETQSETMRRYFEQFGE-ILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT--PFIDGRLRPAT 105 (261)
Q Consensus 29 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~-I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n--~~i~Gr~~~v~ 105 (261)
...++|||+||+++++|++|+++|++||. |..+.+. ++|||||+|.+.++|++||+.+| ..|+|+.+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 35689999999999999999999999999 6655552 47899999999999999999887 57999988887
Q ss_pred eecCC
Q 024889 106 LFSGS 110 (261)
Q Consensus 106 ~~~~~ 110 (261)
+...+
T Consensus 79 ~a~~~ 83 (93)
T 2cqh_A 79 YSVSK 83 (93)
T ss_dssp ECCCC
T ss_pred EccCc
Confidence 76543
No 156
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.65 E-value=3.2e-16 Score=116.21 Aligned_cols=76 Identities=24% Similarity=0.442 Sum_probs=59.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCCCccCCeeeeeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRLRPATL 106 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n~~i~Gr~~~v~~ 106 (261)
.....++|||+||+++++|++|+++|++||.|++|+|+++ +||||||+|.+.++|+++. .....++|+.+.+..
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~-~~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLC-GEDLIIKGISVHISN 80 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHT-TCEEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHc-CCCcccCCEEEEEEE
Confidence 4566789999999999999999999999999999999875 6899999999999998532 222445677666555
Q ss_pred ec
Q 024889 107 FS 108 (261)
Q Consensus 107 ~~ 108 (261)
..
T Consensus 81 a~ 82 (89)
T 3d2w_A 81 AE 82 (89)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 157
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.65 E-value=9.4e-16 Score=127.61 Aligned_cols=83 Identities=22% Similarity=0.324 Sum_probs=76.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
.....++|||+||++++++++|+++|++||.|++|++++++.+++++|||||+|.+.++|++||+.+| ..|+|+.+.|.
T Consensus 110 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 189 (198)
T 2yh0_A 110 VPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQ 189 (198)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34677999999999999999999999999999999999999899999999999999999999999999 89999988877
Q ss_pred eecC
Q 024889 106 LFSG 109 (261)
Q Consensus 106 ~~~~ 109 (261)
....
T Consensus 190 ~a~~ 193 (198)
T 2yh0_A 190 RASV 193 (198)
T ss_dssp ESCC
T ss_pred ECCC
Confidence 6544
No 158
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.65 E-value=4e-16 Score=127.08 Aligned_cols=96 Identities=28% Similarity=0.433 Sum_probs=74.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCC--CcceEEEEEEcCHHHHHHHHhcCC-Ccc-CCeeeeee
Q 024889 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTG--RSKGYGFVTFREPEAARRACADPT-PFI-DGRLRPAT 105 (261)
Q Consensus 30 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg--~skG~gFV~F~~~~~A~~Ai~~~n-~~i-~Gr~~~v~ 105 (261)
+.++|||+|||++++|++|+++|++||.|.+|+|++++.++ +++|||||+|.+.++|++||+.++ ..+ +++.+.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999999998877 899999999999999999999888 444 44333333
Q ss_pred eecCCCC-----CCCCCCcCCCCCC
Q 024889 106 LFSGSTQ-----ATRGPYIGSFGYQ 125 (261)
Q Consensus 106 ~~~~~~~-----~~r~~~~~~~~~~ 125 (261)
+...... ..+.+++++++..
T Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~ 106 (175)
T 3nmr_A 82 MKPADSEKNNAVEDRKLFIGMISKK 106 (175)
T ss_dssp EEECGGGCCSCGGGSEEEEESCCTT
T ss_pred EccccccccccCCCCeEEEcCCCCc
Confidence 3222211 2245566666543
No 159
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.64 E-value=5.6e-16 Score=126.19 Aligned_cols=79 Identities=22% Similarity=0.351 Sum_probs=73.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeee
Q 024889 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLF 107 (261)
Q Consensus 29 ~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~ 107 (261)
...++|||+||++++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++||+.+| ..|+|+.+.|+.+
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 446899999999999999999999999999999999998899999999999999999999999999 8999998777653
No 160
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.64 E-value=4.2e-16 Score=126.32 Aligned_cols=94 Identities=28% Similarity=0.672 Sum_probs=77.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCCCccCCeeeeeeeecC
Q 024889 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRLRPATLFSG 109 (261)
Q Consensus 30 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n~~i~Gr~~~v~~~~~ 109 (261)
+.++|||+|||++++|++|+++|++||.|.+|+|++++.+|+++|||||+|.+.++|++||+. .+.++|+.+.+.....
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccc
Confidence 468999999999999999999999999999999999999999999999999999999999996 3788999776655432
Q ss_pred CCC--CCCCCCcCCCCC
Q 024889 110 STQ--ATRGPYIGSFGY 124 (261)
Q Consensus 110 ~~~--~~r~~~~~~~~~ 124 (261)
... ..+.+++++++.
T Consensus 81 ~~~~~~~~~l~V~nlp~ 97 (167)
T 2cjk_A 81 RDEQDKTGKIFVGGIGP 97 (167)
T ss_dssp HHHHHHCEEEEEEEECT
T ss_pred hhhccCCCeEEECCCCC
Confidence 211 123455555544
No 161
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.64 E-value=1.1e-15 Score=126.09 Aligned_cols=78 Identities=15% Similarity=0.296 Sum_probs=67.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCC--eeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDG--RLRP 103 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~G--r~~~ 103 (261)
...+..+|||+||++.++|++|+++|++||+|++|+|+.+ +++|||||+|.+.++|++|++.|| ..|.| +.++
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~ 117 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 117 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEE
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEE
Confidence 4566789999999999999999999999999999998754 258999999999999999999999 88865 6666
Q ss_pred eeeec
Q 024889 104 ATLFS 108 (261)
Q Consensus 104 v~~~~ 108 (261)
|+...
T Consensus 118 V~~Ak 122 (164)
T 1sjr_A 118 IDFSK 122 (164)
T ss_dssp EEECS
T ss_pred EEEec
Confidence 55543
No 162
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.63 E-value=1.1e-15 Score=129.10 Aligned_cols=79 Identities=16% Similarity=0.245 Sum_probs=72.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCCCccCCeeeeeeeecC
Q 024889 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRLRPATLFSG 109 (261)
Q Consensus 30 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n~~i~Gr~~~v~~~~~ 109 (261)
..++|||+|||+++++++|+++|++||.|.+|+|++++. +++||||||+|.+.++|++||+.++..++|+.+.|.....
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 358999999999999999999999999999999999874 9999999999999999999999988999999888776543
No 163
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.9e-16 Score=115.53 Aligned_cols=73 Identities=22% Similarity=0.485 Sum_probs=61.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCCCccCCeeeeeeeec
Q 024889 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRLRPATLFS 108 (261)
Q Consensus 30 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n~~i~Gr~~~v~~~~ 108 (261)
..++|||+|||++++|++|+++|++||.|++|+|+++ +||||||+|.+.++|++|+.. ...++|+.+.+....
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecC
Confidence 4689999999999999999999999999999999865 689999999999999876443 345677766555443
No 164
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.63 E-value=3.3e-16 Score=115.40 Aligned_cols=72 Identities=18% Similarity=0.194 Sum_probs=65.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeeec
Q 024889 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLFS 108 (261)
Q Consensus 30 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~~ 108 (261)
..++|||+|||++++|++|+++|++| +|.+|+|. ++||||||+|.+.++|++||+.+| ..++|+.++|++..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 45899999999999999999999999 99999884 678999999999999999999999 88999988777653
No 165
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.63 E-value=1.1e-15 Score=123.34 Aligned_cols=80 Identities=25% Similarity=0.449 Sum_probs=72.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATL 106 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~ 106 (261)
....++|||+||+.++++++|+++|++||.|.++++++++.+++++|||||+|.+.++|++|++.+| ..++|+.+++.+
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 4456899999999999999999999999999999999998889999999999999999999999999 899998655544
Q ss_pred e
Q 024889 107 F 107 (261)
Q Consensus 107 ~ 107 (261)
.
T Consensus 165 ~ 165 (167)
T 1fxl_A 165 K 165 (167)
T ss_dssp E
T ss_pred E
Confidence 3
No 166
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.63 E-value=6.6e-16 Score=131.58 Aligned_cols=78 Identities=31% Similarity=0.491 Sum_probs=71.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeeec
Q 024889 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLFS 108 (261)
Q Consensus 30 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~~ 108 (261)
..++|||+||++++++++|+++|++||.|++|+|++|+ +.+||||||+|.+.++|++||+.|| ..|+|+.+.|+.+.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 45799999999999999999999999999999999985 5689999999999999999999999 99999988887654
Q ss_pred C
Q 024889 109 G 109 (261)
Q Consensus 109 ~ 109 (261)
.
T Consensus 180 ~ 180 (213)
T 4f02_A 180 S 180 (213)
T ss_dssp C
T ss_pred C
Confidence 4
No 167
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.62 E-value=1.1e-16 Score=128.25 Aligned_cols=83 Identities=18% Similarity=0.310 Sum_probs=69.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEE--E---eecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAV--V---ITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRL 101 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~--v---~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~ 101 (261)
....++|||+||++++++++|+++|++||.|.+|. + ++...+++++|||||+|.+.++|++||+.|| ..|+|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 44568999999999999999999999999987741 1 1112369999999999999999999999999 8999998
Q ss_pred eeeeeecCC
Q 024889 102 RPATLFSGS 110 (261)
Q Consensus 102 ~~v~~~~~~ 110 (261)
+.|......
T Consensus 122 l~V~~a~~~ 130 (143)
T 3egn_A 122 MVVQFARSA 130 (143)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 888776543
No 168
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.62 E-value=5.5e-16 Score=125.64 Aligned_cols=78 Identities=31% Similarity=0.613 Sum_probs=72.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeeec
Q 024889 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLFS 108 (261)
Q Consensus 30 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~~ 108 (261)
..++|||+||++++++++|+++|++||.|.+|++++|+.+++++|||||+|.+.++|++||+ ++ ..|+|+.+.|....
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 45799999999999999999999999999999999999899999999999999999999999 67 89999988777654
No 169
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.62 E-value=2.2e-15 Score=122.05 Aligned_cols=79 Identities=23% Similarity=0.429 Sum_probs=71.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCC--eeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDG--RLRP 103 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~G--r~~~ 103 (261)
.....++|||+||+.++++++|+++|++||.|.++++++++.+++++|||||+|.+.++|.+|++.+| ..++| +.+.
T Consensus 85 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~ 164 (168)
T 1b7f_A 85 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLS 164 (168)
T ss_dssp STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCE
T ss_pred ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEE
Confidence 34567899999999999999999999999999999999999889999999999999999999999999 88888 5555
Q ss_pred ee
Q 024889 104 AT 105 (261)
Q Consensus 104 v~ 105 (261)
|+
T Consensus 165 V~ 166 (168)
T 1b7f_A 165 VR 166 (168)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 170
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.61 E-value=1.2e-15 Score=111.47 Aligned_cols=70 Identities=20% Similarity=0.427 Sum_probs=63.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcC----C-------CEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-Cc
Q 024889 29 TTYTKVFVGGLAWETQSETMRRYFEQF----G-------EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PF 96 (261)
Q Consensus 29 ~~~~~vfVgnLp~~~te~~L~~~F~~~----G-------~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~ 96 (261)
...++|||+||++++++++|+++|++| | .|.++++.++ ||||||+|.+.++|++|| .+| ..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 456899999999999999999999999 8 9999998765 789999999999999999 888 89
Q ss_pred cCCeeeeee
Q 024889 97 IDGRLRPAT 105 (261)
Q Consensus 97 i~Gr~~~v~ 105 (261)
|+|+.++|+
T Consensus 77 ~~g~~l~V~ 85 (87)
T 2hzc_A 77 FQGQSLKIR 85 (87)
T ss_dssp ETTEECEEE
T ss_pred ECCeEEEEe
Confidence 999976654
No 171
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.4e-15 Score=122.54 Aligned_cols=78 Identities=22% Similarity=0.369 Sum_probs=70.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeeecCC
Q 024889 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLFSGS 110 (261)
Q Consensus 32 ~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~~~~ 110 (261)
++|||+|||+++++++|+++|++||.|.+|++++++. ++++|||||+|.+.++|++||+.++ ..++|+.+.+......
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 5899999999999999999999999999999999975 8899999999999999999999888 8999998887765443
No 172
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.4e-15 Score=118.28 Aligned_cols=64 Identities=20% Similarity=0.335 Sum_probs=57.7
Q ss_pred CCCCcEEEE--cCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-Ccc
Q 024889 28 DTTYTKVFV--GGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFI 97 (261)
Q Consensus 28 ~~~~~~vfV--gnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i 97 (261)
+...++||| |||+++++|++|+++|++||+|.+|.|+.+ ||||||+|.+.++|++||+.|| .+|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 445688999 889999999999999999999999988643 7899999999999999999999 766
No 173
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.60 E-value=1.2e-14 Score=114.78 Aligned_cols=67 Identities=13% Similarity=0.168 Sum_probs=59.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceE-EEEEEcCHHHHHHHHhcCC-CccCCe
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGY-GFVTFREPEAARRACADPT-PFIDGR 100 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~-gFV~F~~~~~A~~Ai~~~n-~~i~Gr 100 (261)
.....+|||+||++.+++++|+++|++||+|++|+|++. +|| |||+|.+.++|++||+.|| ..|.|+
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~ 90 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAG 90 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTT
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCC
Confidence 445567899999999999999999999999999999652 276 9999999999999999999 889885
No 174
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.57 E-value=7.4e-15 Score=119.47 Aligned_cols=78 Identities=23% Similarity=0.341 Sum_probs=68.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccC---Ceeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFID---GRLRP 103 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~---Gr~~~ 103 (261)
....++|||+||++++++++|+++|++||.|+++++++++ +|+++|||||+|.+.++|++||+.+| ..+. ++.+.
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 170 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMV 170 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCE
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeE
Confidence 4467899999999999999999999999999999999997 49999999999999999999999998 5554 36655
Q ss_pred eee
Q 024889 104 ATL 106 (261)
Q Consensus 104 v~~ 106 (261)
|+.
T Consensus 171 V~~ 173 (175)
T 3nmr_A 171 VKF 173 (175)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
No 175
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.57 E-value=7.7e-15 Score=129.32 Aligned_cols=80 Identities=19% Similarity=0.296 Sum_probs=72.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHH----HHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMR----RYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRL 101 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~----~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~ 101 (261)
+....++|||+||++++++++|+ ++|++||.|++|+|++ ++++||||||+|.+.++|++||+.+| ..|+|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 45567999999999999999977 8999999999999986 58899999999999999999999999 8999998
Q ss_pred eeeeeecC
Q 024889 102 RPATLFSG 109 (261)
Q Consensus 102 ~~v~~~~~ 109 (261)
++|.....
T Consensus 82 l~v~~a~~ 89 (282)
T 3pgw_A 82 MRIQYAKT 89 (282)
T ss_pred EEEEEecc
Confidence 88876644
No 176
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.57 E-value=6.6e-15 Score=125.37 Aligned_cols=74 Identities=18% Similarity=0.233 Sum_probs=67.8
Q ss_pred CCcEEEEcCCC-CCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeee
Q 024889 30 TYTKVFVGGLA-WETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLF 107 (261)
Q Consensus 30 ~~~~vfVgnLp-~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~ 107 (261)
..++|||+||+ +++++++|+++|++||.|.+|+|++++ ||||||+|.+.++|++||+.|| ..|.|+.+.|...
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 45799999999 899999999999999999999998763 7999999999999999999999 9999998887765
Q ss_pred c
Q 024889 108 S 108 (261)
Q Consensus 108 ~ 108 (261)
.
T Consensus 78 ~ 78 (205)
T 3tyt_A 78 K 78 (205)
T ss_dssp S
T ss_pred c
Confidence 4
No 177
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.7e-14 Score=109.97 Aligned_cols=80 Identities=23% Similarity=0.365 Sum_probs=67.0
Q ss_pred CCCCCcEEEEcCCCCCCc-----------HHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-
Q 024889 27 GDTTYTKVFVGGLAWETQ-----------SETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT- 94 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~t-----------e~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n- 94 (261)
.....++|+|.||-...+ +++|+++|++||.|++|.| .|+ .+||||||+|.+.++|++||+.||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 345678999999944432 6899999999999999965 554 379999999999999999999999
Q ss_pred CccCCeeeeeeeecCC
Q 024889 95 PFIDGRLRPATLFSGS 110 (261)
Q Consensus 95 ~~i~Gr~~~v~~~~~~ 110 (261)
..|+||.+.|.+...+
T Consensus 87 ~~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 87 RWFGGRQITAQAWDGT 102 (112)
T ss_dssp CEETTEECEEEECCSC
T ss_pred CEECCcEEEEEEeCCC
Confidence 8999999888876543
No 178
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.57 E-value=5.1e-15 Score=116.00 Aligned_cols=75 Identities=19% Similarity=0.310 Sum_probs=66.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
.....++|||+|| ++++++|+++|++||.|.+|+|. ++||||||+|.+.++|++||+.+| ..|+|+.+.|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456789999996 69999999999999999999985 468999999999999999999998 89999988877
Q ss_pred eecC
Q 024889 106 LFSG 109 (261)
Q Consensus 106 ~~~~ 109 (261)
+...
T Consensus 107 ~a~~ 110 (121)
T 2bz2_A 107 IARK 110 (121)
T ss_dssp ECCS
T ss_pred EeCC
Confidence 7554
No 179
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.57 E-value=1.4e-14 Score=115.19 Aligned_cols=79 Identities=15% Similarity=0.317 Sum_probs=65.4
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceE-EEEEEcCHHHHHHHHhcCC-CccCCeeee
Q 024889 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGY-GFVTFREPEAARRACADPT-PFIDGRLRP 103 (261)
Q Consensus 26 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~-gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~ 103 (261)
....+.-+|||+||++.++|++|+++|++||+|++|+|+++ .||| |||+|.+.++|++||+.|| ..|.|+.+.
T Consensus 23 ~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~ 97 (130)
T 3zzy_A 23 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCT 97 (130)
T ss_dssp --CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEE
T ss_pred CCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcE
Confidence 34567789999999999999999999999999999988764 2688 9999999999999999999 888884333
Q ss_pred eeeecC
Q 024889 104 ATLFSG 109 (261)
Q Consensus 104 v~~~~~ 109 (261)
+++...
T Consensus 98 LrI~~a 103 (130)
T 3zzy_A 98 LRIDFS 103 (130)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 334333
No 180
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.55 E-value=1.8e-14 Score=110.31 Aligned_cols=80 Identities=18% Similarity=0.278 Sum_probs=69.2
Q ss_pred CCCcEEEEcCCCC-----CCcHHHHHHHHhcCCCEEEEEEeecCCC-CCcceEEEEEEcCHHHHHHHHhcCC-CccCCee
Q 024889 29 TTYTKVFVGGLAW-----ETQSETMRRYFEQFGEILEAVVITDKNT-GRSKGYGFVTFREPEAARRACADPT-PFIDGRL 101 (261)
Q Consensus 29 ~~~~~vfVgnLp~-----~~te~~L~~~F~~~G~I~~v~v~~d~~t-g~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~ 101 (261)
...+.|+|.||-. +-++++|+++|++||+|++|+|++++.+ ++++||+||+|.+.++|.+|++.|| ..++||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3457899999953 2368999999999999999999998754 6899999999999999999999999 8999998
Q ss_pred eeeeeec
Q 024889 102 RPATLFS 108 (261)
Q Consensus 102 ~~v~~~~ 108 (261)
+.+....
T Consensus 86 i~v~~a~ 92 (105)
T 2pe8_A 86 VKACFYN 92 (105)
T ss_dssp CEEEECC
T ss_pred EEEEEcC
Confidence 8877653
No 181
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.53 E-value=2.3e-14 Score=126.34 Aligned_cols=96 Identities=20% Similarity=0.272 Sum_probs=81.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeeec
Q 024889 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLFS 108 (261)
Q Consensus 30 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~~ 108 (261)
..++|||+|||+++++++|+++|++||.|.++++++|+.+|+++|||||+|.+.++|.+||+.++ ..|+|+.+.+....
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 45799999999999999999999999999999999999899999999999999999999999888 89999988777654
Q ss_pred CCCC-----CCCCCCcCCCCCC
Q 024889 109 GSTQ-----ATRGPYIGSFGYQ 125 (261)
Q Consensus 109 ~~~~-----~~r~~~~~~~~~~ 125 (261)
.... ..+.+++++++..
T Consensus 174 ~~~~~~~~~~~~~l~v~nlp~~ 195 (284)
T 3smz_A 174 AGQLTPALLHSRCLCVDRLPPG 195 (284)
T ss_dssp GGGCCTTTTSCSEEEEECCCTT
T ss_pred CCCCCcccCCccEEEEecCCcc
Confidence 3321 1234455666544
No 182
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=2.7e-14 Score=107.00 Aligned_cols=71 Identities=20% Similarity=0.250 Sum_probs=61.4
Q ss_pred CCcEEEEcCCCCCCcHHH----HHHHHhcC-CCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeee
Q 024889 30 TYTKVFVGGLAWETQSET----MRRYFEQF-GEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRP 103 (261)
Q Consensus 30 ~~~~vfVgnLp~~~te~~----L~~~F~~~-G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~ 103 (261)
..+.|||+||++++++++ |+++|++| |+|.+| |+ |+|||+|.+.++|++|++.|+ ..|.||.++
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 344599999999999988 55899999 599998 34 999999999999999999999 999999888
Q ss_pred eeeecCC
Q 024889 104 ATLFSGS 110 (261)
Q Consensus 104 v~~~~~~ 110 (261)
+..+..+
T Consensus 78 v~~A~~~ 84 (96)
T 2diu_A 78 VSFTPKN 84 (96)
T ss_dssp EESSCCS
T ss_pred EEecCCC
Confidence 7765543
No 183
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.52 E-value=2.4e-15 Score=123.08 Aligned_cols=97 Identities=19% Similarity=0.262 Sum_probs=77.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
.....++|||+|||+++++++|+++|++||.|.. .++++..++++||||||+|.+.++|++||+ +| ..|+|+.+.+.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 4556799999999999999999999999998877 445555679999999999999999999995 77 89999988777
Q ss_pred eecCCCC----CCCCCCcCCCCCC
Q 024889 106 LFSGSTQ----ATRGPYIGSFGYQ 125 (261)
Q Consensus 106 ~~~~~~~----~~r~~~~~~~~~~ 125 (261)
....... ..+.+++++++..
T Consensus 87 ~~~~~~~~~~~~~~~l~v~nlp~~ 110 (175)
T 1fje_B 87 KPKGRDSKKVRAARTLLAKNLSFN 110 (175)
T ss_dssp CCCCSSCSTTGGGGEEEEESCCSS
T ss_pred cCCCccccccccCCEEEEeCCCCC
Confidence 6554322 1244566666643
No 184
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.52 E-value=2.7e-14 Score=116.76 Aligned_cols=77 Identities=19% Similarity=0.322 Sum_probs=68.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
.+...++|||+||+.++++++|+++|++||+|..+ ..+++++|||||+|.+.++|.+||+.+| ..|+|+.+.|+
T Consensus 95 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 169 (175)
T 1fje_B 95 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 169 (175)
T ss_dssp TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEE
T ss_pred ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999988766 4479999999999999999999999999 89999987777
Q ss_pred eec
Q 024889 106 LFS 108 (261)
Q Consensus 106 ~~~ 108 (261)
+..
T Consensus 170 ~a~ 172 (175)
T 1fje_B 170 YTG 172 (175)
T ss_dssp ECS
T ss_pred ecC
Confidence 654
No 185
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.51 E-value=2.3e-14 Score=125.07 Aligned_cols=76 Identities=20% Similarity=0.279 Sum_probs=67.6
Q ss_pred CCCCcEEEEcCCCCCC---------cHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-Ccc
Q 024889 28 DTTYTKVFVGGLAWET---------QSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFI 97 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~---------te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i 97 (261)
+...++||||||+.++ +|++|+++|++||+|++|+|+.+ ||||||+|.++++|++||+.|+ ..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 5678999999999998 79999999999999999999864 7899999999999999999999 777
Q ss_pred ------------CCeeeeeeeecC
Q 024889 98 ------------DGRLRPATLFSG 109 (261)
Q Consensus 98 ------------~Gr~~~v~~~~~ 109 (261)
+|+.+.|+++..
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC-
T ss_pred eccccccccccCCCCEEEEEEccC
Confidence 788877776544
No 186
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.50 E-value=4.7e-14 Score=121.33 Aligned_cols=77 Identities=16% Similarity=0.223 Sum_probs=69.5
Q ss_pred CCCCcEEEEcCCCC-CCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeee
Q 024889 28 DTTYTKVFVGGLAW-ETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPAT 105 (261)
Q Consensus 28 ~~~~~~vfVgnLp~-~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~ 105 (261)
....++|||+|||+ ++++++|+++|++||.|++|+|++++ +|||||+|.+.++|++||+.++ ..|+|+.+.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45678999999999 99999999999999999999999885 7899999999999999999888 89999987776
Q ss_pred eecC
Q 024889 106 LFSG 109 (261)
Q Consensus 106 ~~~~ 109 (261)
....
T Consensus 106 ~a~~ 109 (229)
T 2adc_A 106 LSKH 109 (229)
T ss_dssp CCSC
T ss_pred EecC
Confidence 6543
No 187
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.50 E-value=8.5e-14 Score=122.59 Aligned_cols=76 Identities=18% Similarity=0.196 Sum_probs=68.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccC-Ceeeee
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFID-GRLRPA 104 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~-Gr~~~v 104 (261)
.....++|||+||+.++++++|+++|++||.|++|+|+.++ +|||||+|.+.++|++||+.|| ..|+ |+.++|
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 277 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKI 277 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEE
Confidence 44567899999999999999999999999999999999764 6899999999999999999999 8888 887776
Q ss_pred eee
Q 024889 105 TLF 107 (261)
Q Consensus 105 ~~~ 107 (261)
.+.
T Consensus 278 ~~a 280 (282)
T 3pgw_A 278 SFA 280 (282)
T ss_pred EEe
Confidence 653
No 188
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.49 E-value=4e-14 Score=125.33 Aligned_cols=81 Identities=19% Similarity=0.298 Sum_probs=72.2
Q ss_pred CCCCcEEEEcCCCCC-CcHHHHHHHHhcCCCEEEEEEeecCC-CCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeee
Q 024889 28 DTTYTKVFVGGLAWE-TQSETMRRYFEQFGEILEAVVITDKN-TGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPA 104 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~-~te~~L~~~F~~~G~I~~v~v~~d~~-tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v 104 (261)
....++|||+||+++ +++++|+++|++||.|.+|+|++++. |++++|||||+|.+.++|.+|| .+| ..|+|+.+.|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISV 285 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEE
Confidence 445689999999999 99999999999999999999999876 6999999999999999999999 888 8899998877
Q ss_pred eeecC
Q 024889 105 TLFSG 109 (261)
Q Consensus 105 ~~~~~ 109 (261)
.+...
T Consensus 286 ~~a~~ 290 (292)
T 2ghp_A 286 SLADK 290 (292)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 76543
No 189
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.48 E-value=8.1e-14 Score=122.87 Aligned_cols=83 Identities=12% Similarity=0.115 Sum_probs=75.0
Q ss_pred CCCCCcEEEEcCCCCCC-cHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeee
Q 024889 27 GDTTYTKVFVGGLAWET-QSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPA 104 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~-te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v 104 (261)
.....++|||+|||+++ ++++|+++|++||.|.+|+|++++ +|+++|+|||+|.+.++|.+||+.+| ..|+|+.+.|
T Consensus 180 ~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 258 (284)
T 3smz_A 180 ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRV 258 (284)
T ss_dssp TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Confidence 34567899999999995 999999999999999999999997 69999999999999999999999999 8999998888
Q ss_pred eeecCC
Q 024889 105 TLFSGS 110 (261)
Q Consensus 105 ~~~~~~ 110 (261)
.+...+
T Consensus 259 ~~a~~~ 264 (284)
T 3smz_A 259 SFCAPG 264 (284)
T ss_dssp EECCSS
T ss_pred EEecCC
Confidence 776543
No 190
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.47 E-value=1.2e-13 Score=122.14 Aligned_cols=93 Identities=15% Similarity=0.195 Sum_probs=74.0
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeee
Q 024889 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRP 103 (261)
Q Consensus 25 ~~~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~ 103 (261)
...+...++|||+|||+++++++|+++|+.||.|.+|+|++++. .++|||||+|.+.++|++||+ ++ ..|+|+.+.
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~ 111 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK--KNFRFARIEFARYDGALAAIT-KTHKVVGQNEII 111 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTT--SSSEEEEEEESSHHHHHHHHT-TTTCEETTEECE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC--CCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEE
Confidence 34566789999999999999999999999999999999999874 358999999999999999996 77 899999877
Q ss_pred eeeecCCCCCCCCCCcCCCCCC
Q 024889 104 ATLFSGSTQATRGPYIGSFGYQ 125 (261)
Q Consensus 104 v~~~~~~~~~~r~~~~~~~~~~ 125 (261)
+... ..+.+++++++..
T Consensus 112 v~~~-----~~~~l~v~nlp~~ 128 (292)
T 2ghp_A 112 VSHL-----TECTLWMTNFPPS 128 (292)
T ss_dssp EEEC-----CSCEEEEECCCTT
T ss_pred EEEC-----CCCEEEEECCCCC
Confidence 6653 3455666766543
No 191
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.46 E-value=1.4e-13 Score=111.90 Aligned_cols=89 Identities=17% Similarity=0.344 Sum_probs=70.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcC----C-------CEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-Ccc
Q 024889 30 TYTKVFVGGLAWETQSETMRRYFEQF----G-------EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFI 97 (261)
Q Consensus 30 ~~~~vfVgnLp~~~te~~L~~~F~~~----G-------~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i 97 (261)
+.++|||+|||+++++++|+++|++| | .|.++++. ++||||||+|.+.++|++|| .+| ..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46899999999999999999999999 6 77777764 44899999999999999999 777 899
Q ss_pred CCeeeeeeeecCCCC--CCCCCCcCCCCCC
Q 024889 98 DGRLRPATLFSGSTQ--ATRGPYIGSFGYQ 125 (261)
Q Consensus 98 ~Gr~~~v~~~~~~~~--~~r~~~~~~~~~~ 125 (261)
+|+.+.+........ ..+..++++++..
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~ 105 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQPLPGAHKLFIGGLPNY 105 (172)
T ss_dssp TTEECEEECCSSCCCCTTTTCEEEECCCTT
T ss_pred cCceeeecCCcccCCCCCCCEEEEEcCCCc
Confidence 999877766443322 1245566666553
No 192
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.46 E-value=6.1e-14 Score=117.14 Aligned_cols=74 Identities=16% Similarity=0.234 Sum_probs=67.4
Q ss_pred CcEEEEcCCCC-CCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeeec
Q 024889 31 YTKVFVGGLAW-ETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLFS 108 (261)
Q Consensus 31 ~~~vfVgnLp~-~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~~ 108 (261)
.++|||+|||+ ++++++|+++|++||.|.+|++++++ +|||||+|.+.++|++||+.++ ..++|+.+.+....
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57999999999 99999999999999999999998875 7899999999999999999888 88999987776654
Q ss_pred C
Q 024889 109 G 109 (261)
Q Consensus 109 ~ 109 (261)
.
T Consensus 78 ~ 78 (198)
T 1qm9_A 78 H 78 (198)
T ss_dssp C
T ss_pred C
Confidence 3
No 193
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.46 E-value=4.6e-14 Score=120.17 Aligned_cols=70 Identities=10% Similarity=0.065 Sum_probs=64.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCE--EEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCee
Q 024889 30 TYTKVFVGGLAWETQSETMRRYFEQFGEI--LEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRL 101 (261)
Q Consensus 30 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I--~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~ 101 (261)
..++|||+|||++++|++|+++|++||.| ++++++.++ ++++|||||+|.+.++|.+||+.|| ..|+|+.
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~ 194 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPN 194 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSS
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCC
Confidence 45789999999999999999999999999 899998885 5667999999999999999999999 8898883
No 194
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.46 E-value=3.5e-14 Score=108.44 Aligned_cols=70 Identities=27% Similarity=0.409 Sum_probs=62.2
Q ss_pred EcCCCCCCcHHHHHHHH------------hcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeee
Q 024889 36 VGGLAWETQSETMRRYF------------EQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLR 102 (261)
Q Consensus 36 VgnLp~~~te~~L~~~F------------~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~ 102 (261)
+.+|++++++++|+++| ++||.|++|+|++++. +++||||||+|.+.++|.+|++.|| ..++||.+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 67888888888887777 9999999999999875 8999999999999999999999999 89999987
Q ss_pred eeee
Q 024889 103 PATL 106 (261)
Q Consensus 103 ~v~~ 106 (261)
.|..
T Consensus 99 ~v~~ 102 (104)
T 1jmt_A 99 HAEL 102 (104)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 7764
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.45 E-value=1.4e-13 Score=120.64 Aligned_cols=78 Identities=29% Similarity=0.385 Sum_probs=68.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-C-ccC---Ceeeee
Q 024889 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-P-FID---GRLRPA 104 (261)
Q Consensus 30 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~-~i~---Gr~~~v 104 (261)
..++|||+||+.++++++|+++|++||.|++|+|++|+ +|+++|||||+|.+.++|.+||+.+| . .+. ++.+.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 35799999999999999999999999999999999994 79999999999999999999999995 3 333 666666
Q ss_pred eeec
Q 024889 105 TLFS 108 (261)
Q Consensus 105 ~~~~ 108 (261)
....
T Consensus 174 ~~~~ 177 (261)
T 3sde_A 174 EPME 177 (261)
T ss_dssp EECC
T ss_pred eecc
Confidence 5544
No 196
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.44 E-value=1.5e-13 Score=120.54 Aligned_cols=88 Identities=23% Similarity=0.377 Sum_probs=74.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeee
Q 024889 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATL 106 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~ 106 (261)
....++|||+|||+++++++|+++|++||.|.+|+|.++ ||||||+|.+.++|++||+.++ ..|+|+.+.|..
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 345689999999999999999999999999999999654 7899999999999999999888 899999877765
Q ss_pred ecCCCCCCCCCCcCCCCCC
Q 024889 107 FSGSTQATRGPYIGSFGYQ 125 (261)
Q Consensus 107 ~~~~~~~~r~~~~~~~~~~ 125 (261)
.. ..+.+++++++..
T Consensus 93 a~----~~~~l~v~nl~~~ 107 (261)
T 3sde_A 93 AT----HGAALTVKNLSPV 107 (261)
T ss_dssp CC----CSSEEEEESCCTT
T ss_pred cc----cCCcccccCCCCC
Confidence 43 2345677776653
No 197
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.43 E-value=2.5e-13 Score=103.87 Aligned_cols=80 Identities=14% Similarity=0.084 Sum_probs=67.5
Q ss_pred CCCcEEEEcCC--CCCCc--------HHHHHHHHhcCCCEEEEEEeecCCC--CCcceEEEEEEcCHHHHHHHHhcCC-C
Q 024889 29 TTYTKVFVGGL--AWETQ--------SETMRRYFEQFGEILEAVVITDKNT--GRSKGYGFVTFREPEAARRACADPT-P 95 (261)
Q Consensus 29 ~~~~~vfVgnL--p~~~t--------e~~L~~~F~~~G~I~~v~v~~d~~t--g~skG~gFV~F~~~~~A~~Ai~~~n-~ 95 (261)
...+.|.+.|+ +.++. +++|++.|++||.|++|+|++++.+ ++++||+||+|.+.++|++||+.|| .
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 34578888887 33333 3799999999999999999998764 4689999999999999999999999 8
Q ss_pred ccCCeeeeeeeec
Q 024889 96 FIDGRLRPATLFS 108 (261)
Q Consensus 96 ~i~Gr~~~v~~~~ 108 (261)
.++||.+.+....
T Consensus 83 ~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 83 KFANRVVVTKYCD 95 (105)
T ss_dssp EETTEECEEEEEC
T ss_pred EeCCCEEEEEEeC
Confidence 9999988887653
No 198
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=4e-12 Score=96.43 Aligned_cols=63 Identities=19% Similarity=0.292 Sum_probs=53.4
Q ss_pred CCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCCCccCCeeeeeeeecC
Q 024889 41 WETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRLRPATLFSG 109 (261)
Q Consensus 41 ~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n~~i~Gr~~~v~~~~~ 109 (261)
.+++|++|+++|++||+|++|.|+ +++||||||+|.+.++|++||+.++ .+.++.++|.+...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~-~~~g~~l~V~~a~~ 89 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV-GLVDNPLKISWLEG 89 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC-BCSSSBCEEECSSC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC-CCCCCeEEEEEccC
Confidence 468999999999999999999997 4679999999999999999999854 35677777665443
No 199
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.39 E-value=8.3e-13 Score=103.16 Aligned_cols=79 Identities=14% Similarity=0.204 Sum_probs=67.9
Q ss_pred CCcEEEEcCCCC--CC---cHHHHHHHHhcCCCEEEEEEeecCC----CCCcceEEEEEEcCHHHHHHHHhcCC-CccCC
Q 024889 30 TYTKVFVGGLAW--ET---QSETMRRYFEQFGEILEAVVITDKN----TGRSKGYGFVTFREPEAARRACADPT-PFIDG 99 (261)
Q Consensus 30 ~~~~vfVgnLp~--~~---te~~L~~~F~~~G~I~~v~v~~d~~----tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~G 99 (261)
..+.|++.|+-. ++ -+++|++.|++||.|++|+|++++. +++++||+||+|.+.++|.+||+.|| ..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 457899999832 22 3689999999999999999999864 46789999999999999999999999 89999
Q ss_pred eeeeeeeec
Q 024889 100 RLRPATLFS 108 (261)
Q Consensus 100 r~~~v~~~~ 108 (261)
|.+.+....
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 998887753
No 200
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.39 E-value=5.4e-13 Score=110.79 Aligned_cols=72 Identities=18% Similarity=0.385 Sum_probs=61.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcC----C-------CEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-Ccc
Q 024889 30 TYTKVFVGGLAWETQSETMRRYFEQF----G-------EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFI 97 (261)
Q Consensus 30 ~~~~vfVgnLp~~~te~~L~~~F~~~----G-------~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i 97 (261)
..++|||+|||++++|++|+++|++| | .|.++++ +++||||||+|.+.++|++|| .+| ..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 45899999999999999999999999 4 5666555 556899999999999999999 677 889
Q ss_pred CCeeeeeeeec
Q 024889 98 DGRLRPATLFS 108 (261)
Q Consensus 98 ~Gr~~~v~~~~ 108 (261)
+|+.+.+....
T Consensus 76 ~g~~i~v~~~~ 86 (198)
T 2yh0_A 76 QGQSLKIRRPH 86 (198)
T ss_dssp TTEEEEEECCC
T ss_pred cCceEEEeCCC
Confidence 99987776543
No 201
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.39 E-value=8.4e-13 Score=110.17 Aligned_cols=75 Identities=9% Similarity=0.110 Sum_probs=66.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCC-CEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccC-Ceeeeee
Q 024889 29 TTYTKVFVGGLAWETQSETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFID-GRLRPAT 105 (261)
Q Consensus 29 ~~~~~vfVgnLp~~~te~~L~~~F~~~G-~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~-Gr~~~v~ 105 (261)
...++|||+||+.++++++|+++|++|| .|++|+|+.+. +|+|||+|.+.++|++||+.+| ..++ |+.+.+.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 3478999999999999999999999999 99999997652 7899999999999999999999 8888 8877776
Q ss_pred eec
Q 024889 106 LFS 108 (261)
Q Consensus 106 ~~~ 108 (261)
...
T Consensus 193 ~a~ 195 (198)
T 1qm9_A 193 FSK 195 (198)
T ss_dssp EEC
T ss_pred eec
Confidence 643
No 202
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.37 E-value=1.3e-12 Score=112.30 Aligned_cols=75 Identities=9% Similarity=0.110 Sum_probs=66.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCC-CEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccC-Ceeeeee
Q 024889 29 TTYTKVFVGGLAWETQSETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFID-GRLRPAT 105 (261)
Q Consensus 29 ~~~~~vfVgnLp~~~te~~L~~~F~~~G-~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~-Gr~~~v~ 105 (261)
...++|||+||++++++++|+++|++|| +|++|+|+.+ ++|||||+|.+.++|++||+.+| ..|+ |+.++|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 3468999999999999999999999999 9999999753 37899999999999999999999 8888 8877776
Q ss_pred eec
Q 024889 106 LFS 108 (261)
Q Consensus 106 ~~~ 108 (261)
...
T Consensus 224 ~a~ 226 (229)
T 2adc_A 224 FSK 226 (229)
T ss_dssp ECS
T ss_pred Eec
Confidence 543
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.30 E-value=3.3e-12 Score=116.87 Aligned_cols=65 Identities=17% Similarity=0.243 Sum_probs=57.4
Q ss_pred CCCCCcEEEEcC--CCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-Ccc
Q 024889 27 GDTTYTKVFVGG--LAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFI 97 (261)
Q Consensus 27 ~~~~~~~vfVgn--Lp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i 97 (261)
.+...++||||| |++.++|++|+++|++||+|++|++.. +||||||+|.+.++|++||+.|| .++
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEV 81 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence 355668999998 688999999999999999999987743 47999999999999999999999 655
No 204
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=1.3e-10 Score=91.04 Aligned_cols=78 Identities=15% Similarity=0.162 Sum_probs=67.5
Q ss_pred CCCCCCCCcEEEEcCCCCC-CcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcC-HHHHHHHHhcCC---CccC
Q 024889 24 SPFGDTTYTKVFVGGLAWE-TQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRE-PEAARRACADPT---PFID 98 (261)
Q Consensus 24 ~~~~~~~~~~vfVgnLp~~-~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~-~~~A~~Ai~~~n---~~i~ 98 (261)
.+..-...+.|||+||+++ +++++|+++|++||+|..|.++++.. .|||+|.+ .++|.+||+.+| ..|+
T Consensus 11 ~~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~ 84 (121)
T 1owx_A 11 GSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLR 84 (121)
T ss_dssp CCCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTT
T ss_pred CcccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEe
Confidence 4556778899999999999 99999999999999999999999865 69999999 899999999985 5688
Q ss_pred Ceeeeeeee
Q 024889 99 GRLRPATLF 107 (261)
Q Consensus 99 Gr~~~v~~~ 107 (261)
+....+++.
T Consensus 85 g~~~~~evL 93 (121)
T 1owx_A 85 NKEVTWEVL 93 (121)
T ss_dssp SSSEEEEEC
T ss_pred CcEEEEEEC
Confidence 876555543
No 205
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.13 E-value=4.4e-11 Score=92.79 Aligned_cols=73 Identities=12% Similarity=0.137 Sum_probs=59.9
Q ss_pred CcEEEEcCCCCC----------CcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCC
Q 024889 31 YTKVFVGGLAWE----------TQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDG 99 (261)
Q Consensus 31 ~~~vfVgnLp~~----------~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~G 99 (261)
.+.|.+.|+=.. --+++|++.|++||.|++|+|.++. .+||+||+|.+.++|++||+.|| ..++|
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 456677766221 1236889999999999999997663 49999999999999999999999 89999
Q ss_pred eeeeeeee
Q 024889 100 RLRPATLF 107 (261)
Q Consensus 100 r~~~v~~~ 107 (261)
|.+.+...
T Consensus 83 R~i~v~~~ 90 (114)
T 3s6e_A 83 KMITAAYV 90 (114)
T ss_dssp EECEEEEE
T ss_pred EEEEEEEE
Confidence 98888775
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.93 E-value=2.4e-09 Score=79.33 Aligned_cols=70 Identities=23% Similarity=0.193 Sum_probs=58.1
Q ss_pred CcEEEEcCCCC----CCcH----HHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCee
Q 024889 31 YTKVFVGGLAW----ETQS----ETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRL 101 (261)
Q Consensus 31 ~~~vfVgnLp~----~~te----~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~ 101 (261)
..+|+|.-++. ++-+ .+|.+.|.+||+|..++++.|+ +||+|.+.++|.+||+ || ..|+||.
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 45777776652 2333 5789999999999999999984 8999999999999999 88 9999999
Q ss_pred eeeeeecC
Q 024889 102 RPATLFSG 109 (261)
Q Consensus 102 ~~v~~~~~ 109 (261)
++|+++..
T Consensus 78 LkV~lkt~ 85 (91)
T 2dnr_A 78 ITIALKSP 85 (91)
T ss_dssp EEEEECCC
T ss_pred EEEEeCCC
Confidence 98887653
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.88 E-value=3.9e-09 Score=89.94 Aligned_cols=66 Identities=15% Similarity=0.237 Sum_probs=58.2
Q ss_pred CcHHHHHHHHhcCCCEEEEEEeecC----CCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeeeec
Q 024889 43 TQSETMRRYFEQFGEILEAVVITDK----NTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATLFS 108 (261)
Q Consensus 43 ~te~~L~~~F~~~G~I~~v~v~~d~----~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~~~ 108 (261)
-.+++|++.|++||+|.+++|+++. .+++++|++||+|.+.++|.+||+.|| ..++||.+.+....
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 4578999999999999999998554 456999999999999999999999999 89999988877653
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.84 E-value=1.1e-09 Score=81.63 Aligned_cols=70 Identities=16% Similarity=0.098 Sum_probs=58.9
Q ss_pred CCcEEEEcCCCCC------CcH---HHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCC
Q 024889 30 TYTKVFVGGLAWE------TQS---ETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDG 99 (261)
Q Consensus 30 ~~~~vfVgnLp~~------~te---~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~G 99 (261)
...+|+|.-++.. .++ .+|.+.|..||+|..++++.|+ +||+|.+.++|.+||+ |+ ..|+|
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~G 84 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKG 84 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETT
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCC
Confidence 4578999888643 232 5689999999999999999984 9999999999999999 88 99999
Q ss_pred eeeeeeeec
Q 024889 100 RLRPATLFS 108 (261)
Q Consensus 100 r~~~v~~~~ 108 (261)
|.++|+++.
T Consensus 85 r~L~V~~k~ 93 (95)
T 1ufw_A 85 RAVKISGPS 93 (95)
T ss_dssp EEEEEECCC
T ss_pred eEEEEeccC
Confidence 998887653
No 209
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=5.4e-05 Score=57.02 Aligned_cols=84 Identities=25% Similarity=0.240 Sum_probs=65.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhc-----CCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCCCccCCeeeeeee
Q 024889 32 TKVFVGGLAWETQSETMRRYFEQ-----FGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRLRPATL 106 (261)
Q Consensus 32 ~~vfVgnLp~~~te~~L~~~F~~-----~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n~~i~Gr~~~v~~ 106 (261)
++|.|.|||.+++++.|+-+|+. =|+|.+++... +-|+|+|.+.+.|++.|+...|.|++-.+.|..
T Consensus 9 ~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P 80 (104)
T 2dhx_A 9 VAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLSLRP 80 (104)
T ss_dssp CEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEE
T ss_pred cEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEEEEc
Confidence 79999999999999999999986 25788877644 378999999999999999988999997767666
Q ss_pred ecCCCCCCCCCCcCCCCCC
Q 024889 107 FSGSTQATRGPYIGSFGYQ 125 (261)
Q Consensus 107 ~~~~~~~~r~~~~~~~~~~ 125 (261)
+..+ ..+..+..++...
T Consensus 81 ~~~~--~~~r~ll~gl~~~ 97 (104)
T 2dhx_A 81 APPR--APARLLLQGLPPG 97 (104)
T ss_dssp CCCC--CCCCCCCCSCCCC
T ss_pred CCCC--CcceEeeecCCCC
Confidence 5543 3344455555443
No 210
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.12 E-value=5.5e-06 Score=63.15 Aligned_cols=74 Identities=11% Similarity=0.144 Sum_probs=64.4
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcC-----CCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCC
Q 024889 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQF-----GEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDG 99 (261)
Q Consensus 26 ~~~~~~~~vfVgnLp~~~te~~L~~~F~~~-----G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~G 99 (261)
..++..++|-+=+||+.++++.++.+++.+ |.|+++.+..|. +-|+|+|.|...|-+|.-.++ .+|+|
T Consensus 16 ~~~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~g 89 (117)
T 2l9w_A 16 NSKELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQG 89 (117)
T ss_dssp CTTTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETT
T ss_pred CCccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecC
Confidence 345557788888999999999999999999 999999999885 489999999999999987777 89999
Q ss_pred eeeeee
Q 024889 100 RLRPAT 105 (261)
Q Consensus 100 r~~~v~ 105 (261)
|.+++.
T Consensus 90 r~Lr~g 95 (117)
T 2l9w_A 90 KVIRSG 95 (117)
T ss_dssp EEEEEE
T ss_pred eEEEec
Confidence 976654
No 211
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.39 E-value=0.00072 Score=50.36 Aligned_cols=56 Identities=21% Similarity=0.334 Sum_probs=47.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcC
Q 024889 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP 93 (261)
Q Consensus 30 ~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~ 93 (261)
....||+-++|.++...||.++|+.|| -..|+++.|- -|||.|.+++.|..|+..+
T Consensus 14 ~r~HVf~l~FP~ewKt~DI~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 14 KRDHVLHVTFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCSEEEEECCTTCCHHHHHHHHTTTC-SCCCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCCeEEEEeCChhhhhHHHHHHhhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 344455449999999999999999999 4568888874 8999999999999999865
No 212
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.23 E-value=0.0014 Score=50.66 Aligned_cols=67 Identities=19% Similarity=0.247 Sum_probs=53.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCCCccCCe
Q 024889 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGR 100 (261)
Q Consensus 27 ~~~~~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n~~i~Gr 100 (261)
+....+-|.|-+.+.+. .+.+.++|++||+|++...... .-.-.|.|.++.+|++||.+....|++.
T Consensus 20 ~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~kNG~ii~g~ 86 (119)
T 1wwh_A 20 DHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALSKDGRIFGES 86 (119)
T ss_dssp -CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHTTTTCEETTT
T ss_pred CCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHHhCCeEecCC
Confidence 34456788888999985 5777889999999999887322 2388999999999999999866777754
No 213
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.92 E-value=0.0023 Score=48.20 Aligned_cols=70 Identities=9% Similarity=-0.023 Sum_probs=56.4
Q ss_pred CCcEEEEcCCCCCC-c----HHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeee
Q 024889 30 TYTKVFVGGLAWET-Q----SETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRP 103 (261)
Q Consensus 30 ~~~~vfVgnLp~~~-t----e~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~ 103 (261)
-.++|+|.||+.++ . .+.++++|..|+++.....++.= .-..|.|.+.++|.+|-..++ ..++|+.++
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 35789999998876 2 25778999999999888887662 145899999999999999999 789999655
Q ss_pred ee
Q 024889 104 AT 105 (261)
Q Consensus 104 v~ 105 (261)
+-
T Consensus 78 ~Y 79 (104)
T 1wey_A 78 LY 79 (104)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.73 E-value=0.0013 Score=49.00 Aligned_cols=53 Identities=23% Similarity=0.371 Sum_probs=46.2
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcC
Q 024889 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP 93 (261)
Q Consensus 33 ~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~ 93 (261)
.||+-++|.++...||.++|+.|| -..|+++.|- -|||.|.+++.|..|+..+
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHH
T ss_pred eEEEEeCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 455559999999999999999999 5678888884 8999999999999999865
No 215
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.49 E-value=0.0072 Score=44.43 Aligned_cols=63 Identities=11% Similarity=0.067 Sum_probs=51.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCC--cceEEEEEEcCHHHHHHHHhcCC
Q 024889 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGR--SKGYGFVTFREPEAARRACADPT 94 (261)
Q Consensus 32 ~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~--skG~gFV~F~~~~~A~~Ai~~~n 94 (261)
+||-|.+||+.+||+++.+.+....++........+.+.+ .-.-|+|.|.+.+++..-.+..+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~ 66 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFD 66 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhC
Confidence 6899999999999999999999888877766665543322 23679999999999998888866
No 216
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.17 E-value=0.0032 Score=49.89 Aligned_cols=39 Identities=15% Similarity=0.126 Sum_probs=31.2
Q ss_pred EEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC--CccCCe
Q 024889 60 EAVVITDKNTGRSKGYGFVTFREPEAARRACADPT--PFIDGR 100 (261)
Q Consensus 60 ~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n--~~i~Gr 100 (261)
.++|+++. .+++||+||+|.+.++|++||+.++ ..+++.
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~ 42 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGE 42 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCE
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCc
Confidence 46788885 4799999999999999999998776 344444
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.00 E-value=0.003 Score=59.60 Aligned_cols=56 Identities=20% Similarity=0.287 Sum_probs=43.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcC
Q 024889 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP 93 (261)
Q Consensus 32 ~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~ 93 (261)
+.|||. .+.++++++|.++|++||.|.++.+-+++ | -|+.|+|.+.+++.+++...
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHSSC
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHhcc
Confidence 789997 79999999999999999999999887653 2 59999999999999888654
No 218
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.40 E-value=0.02 Score=44.76 Aligned_cols=77 Identities=21% Similarity=0.358 Sum_probs=53.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEEEE-EEeec--------CCCCC-----cceEEEEEEcCHHHHHHHHhcCCCc
Q 024889 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEA-VVITD--------KNTGR-----SKGYGFVTFREPEAARRACADPTPF 96 (261)
Q Consensus 31 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v-~v~~d--------~~tg~-----skG~gFV~F~~~~~A~~Ai~~~n~~ 96 (261)
.+.|.|=+.|.+. ...+.+.|++||.|++- .+.++ +.+.+ ....-.|+|.++.+|.+||.+....
T Consensus 7 e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 3566677886664 46677899999999872 22110 00011 2457799999999999999997788
Q ss_pred cCCeeeeeeeec
Q 024889 97 IDGRLRPATLFS 108 (261)
Q Consensus 97 i~Gr~~~v~~~~ 108 (261)
|+|..+-|+++.
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999877776653
No 219
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=94.01 E-value=0.028 Score=44.07 Aligned_cols=36 Identities=14% Similarity=0.004 Sum_probs=31.1
Q ss_pred CCcceEEEEEEcCHHHHHHHHhcC-C-CccCCeeeeeee
Q 024889 70 GRSKGYGFVTFREPEAARRACADP-T-PFIDGRLRPATL 106 (261)
Q Consensus 70 g~skG~gFV~F~~~~~A~~Ai~~~-n-~~i~Gr~~~v~~ 106 (261)
.+.+|+++|+|.+.++|++||+.+ | ..|+| .+.+..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~ 47 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDD 47 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEET
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceeccc
Confidence 577999999999999999999999 8 88999 555543
No 220
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.18 E-value=0.098 Score=38.74 Aligned_cols=70 Identities=11% Similarity=0.076 Sum_probs=47.7
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCC-C-cceEEEEEEcCHHHHHHHHhcCC--CccCCe
Q 024889 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTG-R-SKGYGFVTFREPEAARRACADPT--PFIDGR 100 (261)
Q Consensus 31 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg-~-skG~gFV~F~~~~~A~~Ai~~~n--~~i~Gr 100 (261)
.-||.|..||+.+||+++.+.+..+=++........+.+- . .-.-|+|.|.+.++...-.+..+ ..+|.|
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~k 82 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSK 82 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTT
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCC
Confidence 4589999999999999988877665444322222222111 1 12568999999999999988877 344544
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=89.68 E-value=0.51 Score=44.86 Aligned_cols=55 Identities=22% Similarity=0.371 Sum_probs=45.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC
Q 024889 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT 94 (261)
Q Consensus 31 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n 94 (261)
...++|+ ++..+...+|.++|+.||. .+|+++.|. .+||.|.+.+.|..++..++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 4455565 8889999999999999994 567776663 79999999999999998764
No 222
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.09 E-value=28 Score=24.49 Aligned_cols=56 Identities=7% Similarity=0.109 Sum_probs=38.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEc-CHHHHHHHHhcCC
Q 024889 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR-EPEAARRACADPT 94 (261)
Q Consensus 32 ~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~-~~~~A~~Ai~~~n 94 (261)
.++.|. +.-.--...+++.+.+.-.|.++.+-... +-+.|.+. +.++..++|+...
T Consensus 21 ~~l~V~-m~C~~C~~~Ie~aL~~l~GV~~v~vdl~~------~~~~V~~~~~~~~i~~~i~~~G 77 (98)
T 2crl_A 21 LEFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLED------QMVLVHTTLPSQEVQALLEGTG 77 (98)
T ss_dssp EEEEEC-CCSHHHHHHHHHTTTTCTTCCEEEEETTT------TEEEEEESSCHHHHHHHHHTTT
T ss_pred EEEEEe-eECHHHHHHHHHHHHcCCCceEEEEECCC------CEEEEEEeCCHHHHHHHHHHhC
Confidence 356666 65555557888888888788888875542 24556664 6677788887654
No 223
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=57.68 E-value=2.2 Score=31.49 Aligned_cols=20 Identities=10% Similarity=0.295 Sum_probs=0.0
Q ss_pred CCCCcEEEEcCCCCCCcHHH
Q 024889 28 DTTYTKVFVGGLAWETQSET 47 (261)
Q Consensus 28 ~~~~~~vfVgnLp~~~te~~ 47 (261)
....++|||+||++++|++.
T Consensus 94 ~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 94 AKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp --------------------
T ss_pred cCCCCceEeCCCCCCccccc
Confidence 34557899999999999874
No 224
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=44.39 E-value=59 Score=23.00 Aligned_cols=46 Identities=11% Similarity=0.136 Sum_probs=31.6
Q ss_pred cHHHHHHHHh----cCC-CEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC
Q 024889 44 QSETMRRYFE----QFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT 94 (261)
Q Consensus 44 te~~L~~~F~----~~G-~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n 94 (261)
.|..+++.++ .-+ +|.++.+.. ..+||-||++...++...+|....
T Consensus 21 ~E~~V~~~L~~~~~~~~l~i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~ 71 (92)
T 3lpe_A 21 QEKNIAGLMASRAEKEQLDVYSILASE-----SLKGYVLVEAETKGDVEELIKGMP 71 (92)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCT
T ss_pred hHHHHHHHHHHHHHhcCCcEEEEEEec-----ccCCEEEEEEecchhHHHHHHCCC
Confidence 4554444443 223 366666543 379999999999999999998765
No 225
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=42.17 E-value=55 Score=21.82 Aligned_cols=56 Identities=7% Similarity=0.071 Sum_probs=31.7
Q ss_pred CCcHHHHHHHHhc-CC----CEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeeeee
Q 024889 42 ETQSETMRRYFEQ-FG----EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPATL 106 (261)
Q Consensus 42 ~~te~~L~~~F~~-~G----~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~~ 106 (261)
.+...+|..++.. .| .|-.+.+..+ |.||+-... .+.++++.++ ..++|+.+.++.
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~ 73 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNK 73 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTT-CHHHHHHHHTTCCC---CCCEEE
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHH-HHHHHHHHhccccCcCceEEEEE
Confidence 4555666666643 33 4556666444 888888754 4667777777 788888665543
No 226
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=39.66 E-value=1e+02 Score=24.69 Aligned_cols=65 Identities=14% Similarity=0.120 Sum_probs=42.5
Q ss_pred EEEEcCCCCC---------CcHHHHHHHH--hcCCCEEEEEEeecCCCCCcceEEEEEEc-CHHHHHHHHhcCC-CccCC
Q 024889 33 KVFVGGLAWE---------TQSETMRRYF--EQFGEILEAVVITDKNTGRSKGYGFVTFR-EPEAARRACADPT-PFIDG 99 (261)
Q Consensus 33 ~vfVgnLp~~---------~te~~L~~~F--~~~G~I~~v~v~~d~~tg~skG~gFV~F~-~~~~A~~Ai~~~n-~~i~G 99 (261)
.+.|-|++.+ ....+|++.| ..|..++ |+.+.++ ..+.|++.|+|. |-.-...|+..-+ ....+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~fek~Fe~~~ 90 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLLFDKAYTVDG 90 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHHHHHHHHHcC
Confidence 4555666651 3457899977 8997755 5555554 457899999997 5566677776544 33344
Q ss_pred e
Q 024889 100 R 100 (261)
Q Consensus 100 r 100 (261)
+
T Consensus 91 ~ 91 (172)
T 4e8u_A 91 H 91 (172)
T ss_dssp C
T ss_pred C
Confidence 3
No 227
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=37.91 E-value=79 Score=20.25 Aligned_cols=57 Identities=9% Similarity=0.006 Sum_probs=43.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC
Q 024889 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT 94 (261)
Q Consensus 31 ~~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n 94 (261)
..++.|.++.-.--...+++.+.+ -.|.++.+-.. .+-+.|+|.+.++..++|+...
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~G 62 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAAG 62 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHTT
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHcC
Confidence 357888899888888999999988 88888877443 3466788877777788887654
No 228
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=35.96 E-value=5.9 Score=31.15 Aligned_cols=28 Identities=14% Similarity=0.273 Sum_probs=15.2
Q ss_pred HHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEc
Q 024889 46 ETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81 (261)
Q Consensus 46 ~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~ 81 (261)
+|+.++|...|.|+ ++.+ .|||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vk---wfn~-----~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICK---WFNV-----RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEE---EEET-----TTTEEEEEEE
T ss_pred CcccccccceeEEE---EEEC-----CCCeeEEeeC
Confidence 45556666555544 3332 3789999875
No 229
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=35.28 E-value=52 Score=23.41 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=21.5
Q ss_pred CEEEEEEeecCCCCCcceEEEEEEcC
Q 024889 57 EILEAVVITDKNTGRSKGYGFVTFRE 82 (261)
Q Consensus 57 ~I~~v~v~~d~~tg~skG~gFV~F~~ 82 (261)
+|++++|-+-...|+-|+|+-|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 68888887665568999999999985
No 230
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=31.84 E-value=74 Score=25.18 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=28.8
Q ss_pred CcHHHHHHHHhcCCCEE---EEEEeecCCCCCcceEEEE
Q 024889 43 TQSETMRRYFEQFGEIL---EAVVITDKNTGRSKGYGFV 78 (261)
Q Consensus 43 ~te~~L~~~F~~~G~I~---~v~v~~d~~tg~skG~gFV 78 (261)
.++++|+++=++.|++. ++.+..|.++|+.+.++|-
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~ 41 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYH 41 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEE
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEE
Confidence 58999999999999874 5666777547999988875
No 231
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=31.21 E-value=64 Score=23.58 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=21.5
Q ss_pred CEEEEEEeecCCCCCcceEEEEEEcC
Q 024889 57 EILEAVVITDKNTGRSKGYGFVTFRE 82 (261)
Q Consensus 57 ~I~~v~v~~d~~tg~skG~gFV~F~~ 82 (261)
+|++|+|.+-...|+-|+|+-|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 68888887665568999999999985
No 232
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=29.68 E-value=71 Score=23.56 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=21.2
Q ss_pred CEEEEEEeecCCCCCcceEEEEEEcC
Q 024889 57 EILEAVVITDKNTGRSKGYGFVTFRE 82 (261)
Q Consensus 57 ~I~~v~v~~d~~tg~skG~gFV~F~~ 82 (261)
+|++|+|.+-...|+-|+|+-|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 57888887665568999999999985
No 233
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.85 E-value=24 Score=25.23 Aligned_cols=20 Identities=5% Similarity=0.122 Sum_probs=16.9
Q ss_pred EcCCCCCCcHHHHHHHHhcC
Q 024889 36 VGGLAWETQSETMRRYFEQF 55 (261)
Q Consensus 36 VgnLp~~~te~~L~~~F~~~ 55 (261)
|-+|+.+++.++|++.|.+.
T Consensus 22 vLgv~~~as~~eIk~ayr~l 41 (99)
T 2yua_A 22 LLGVPSTATQAQIKAAYYRQ 41 (99)
T ss_dssp HHTCCTTCCHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHH
Confidence 55899999999999999653
No 234
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=27.38 E-value=62 Score=28.91 Aligned_cols=52 Identities=15% Similarity=0.238 Sum_probs=35.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhc---------CCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCCCccCCe
Q 024889 32 TKVFVGGLAWETQSETMRRYFEQ---------FGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGR 100 (261)
Q Consensus 32 ~~vfVgnLp~~~te~~L~~~F~~---------~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n~~i~Gr 100 (261)
.-+.|+|||..++..-|.++++. +| +.++ |.+-..|.|++.+.......-|+
T Consensus 143 ~~~vvaNLPYnIstpil~~ll~~~~~~~~l~~~~-~~~m----------------~lmvQkEvA~Rl~A~PGsk~yg~ 203 (353)
T 1i4w_A 143 KFLTVANVTGEGSEGLIMQWLSCIGNKNWLYRFG-KVKM----------------LLWMPSTTARKLLARPGMHSRSK 203 (353)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHHHHHTCGGGGGS-EEEE----------------EEEEEHHHHHHHHCCTTSTTCCH
T ss_pred ceEEEEECCCchHHHHHHHHHHhccccccccccC-cceE----------------EEEeEHHHHHHhcCCCCCccccH
Confidence 34789999999999999888864 22 2233 33344678888887766555555
No 235
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=26.11 E-value=1.6e+02 Score=21.44 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=27.0
Q ss_pred CEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCCCc
Q 024889 57 EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF 96 (261)
Q Consensus 57 ~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n~~ 96 (261)
.|.++... ...|||-||+=.+..+..+||+.+.+.
T Consensus 40 ~I~Si~~~-----~~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAP-----EHVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEEC-----TTCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEec-----CCCceEEEEEeCCHHHHHHHHhcccce
Confidence 35555442 235999999999999999999988743
No 236
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=31.09 E-value=15 Score=27.16 Aligned_cols=59 Identities=12% Similarity=0.126 Sum_probs=35.2
Q ss_pred CCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcc-eEEEEEEcCHHHHHHHHhcCCCcc
Q 024889 38 GLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSK-GYGFVTFREPEAARRACADPTPFI 97 (261)
Q Consensus 38 nLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~sk-G~gFV~F~~~~~A~~Ai~~~n~~i 97 (261)
-|-...++++|.++..+.+ +..+.+.+....|+.. -.-+=.|.+.++|.+|++.|...|
T Consensus 29 QL~a~~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~~l 88 (106)
T 2lfv_A 29 QLSSSSNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPADV 88 (106)
Confidence 3444455677777777765 4445554432223321 122336889999999999987444
No 237
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=25.12 E-value=17 Score=27.45 Aligned_cols=51 Identities=10% Similarity=-0.094 Sum_probs=8.8
Q ss_pred EEEEEEcCHHHHHHHHhcCC-CccCCeeeeee-eecCCCCCCCCCCcCCCCCC
Q 024889 75 YGFVTFREPEAARRACADPT-PFIDGRLRPAT-LFSGSTQATRGPYIGSFGYQ 125 (261)
Q Consensus 75 ~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v~-~~~~~~~~~r~~~~~~~~~~ 125 (261)
+.|++|.|...+.+|++.++ ....|+..... .........+.+++++++..
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~~~~~~~~~~~~~~~~l~V~nLp~~ 58 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGSMSYGRPPPDVEGMTSLKVDNLTYR 58 (135)
T ss_dssp -----------------------------CCSCCSCSSGGGCCCEEEECCCSS
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCCCCcCCCCCCCCCCCEEEEeCCCCC
Confidence 67888889999999999988 55555521110 00111122355677777653
No 238
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.09 E-value=33 Score=23.21 Aligned_cols=11 Identities=18% Similarity=0.413 Sum_probs=9.0
Q ss_pred ceEEEEEEcCH
Q 024889 73 KGYGFVTFREP 83 (261)
Q Consensus 73 kG~gFV~F~~~ 83 (261)
+..|||.|.|.
T Consensus 37 ~~~ClV~FeD~ 47 (68)
T 2e5p_A 37 REVCLVQFEDD 47 (68)
T ss_dssp TTEEEEEETTT
T ss_pred CcEEEEEEccC
Confidence 56899999973
No 239
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=24.73 E-value=54 Score=31.70 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=40.3
Q ss_pred CCCCCCcHHHHHHHHh----cCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcC
Q 024889 38 GLAWETQSETMRRYFE----QFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP 93 (261)
Q Consensus 38 nLp~~~te~~L~~~F~----~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~ 93 (261)
....+.+--||..+|- .+|-|+++.|..-+. -+.+.+.++.|.+.++|.+++..+
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~-P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPT-PEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEEC-CSEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccC-CccccccccccCCchhhhhhHHHH
Confidence 3444555557888882 588999998765543 445678899999999999888754
No 240
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=23.15 E-value=1.1e+02 Score=27.20 Aligned_cols=59 Identities=17% Similarity=0.196 Sum_probs=40.9
Q ss_pred EEEEcCCCCCC----cHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCCCccCCe
Q 024889 33 KVFVGGLAWET----QSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGR 100 (261)
Q Consensus 33 ~vfVgnLp~~~----te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n~~i~Gr 100 (261)
--+||||..-. -...+.++.++||.|..+.+.. .-+|...+.+.++.++......+.+|
T Consensus 16 lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~---------~~~vvv~~p~~~k~il~~~~~~f~~r 78 (494)
T 3swz_A 16 LPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGT---------KTTVIVGHHQLAKEVLIKKGKDFSGR 78 (494)
T ss_dssp CCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETT---------EEEEEECSHHHHHHHHTTTTTTTBBC
T ss_pred CCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCC---------CCEEEECCHHHHHHHHHhCcHhhCCC
Confidence 34688875432 2356777888999998887632 34778889999999997754444444
No 241
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=23.07 E-value=67 Score=27.38 Aligned_cols=34 Identities=15% Similarity=0.367 Sum_probs=27.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeec
Q 024889 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITD 66 (261)
Q Consensus 32 ~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d 66 (261)
..+.|+|||..++...|.++++. ..+.++.++..
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~Q 144 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLVQ 144 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEee
Confidence 46789999999999999999987 66766655543
No 242
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=22.61 E-value=39 Score=23.52 Aligned_cols=11 Identities=18% Similarity=0.413 Sum_probs=8.9
Q ss_pred ceEEEEEEcCH
Q 024889 73 KGYGFVTFREP 83 (261)
Q Consensus 73 kG~gFV~F~~~ 83 (261)
+..|+|.|.|.
T Consensus 54 ~e~ClV~F~D~ 64 (79)
T 2m0o_A 54 REVCLVQFEDD 64 (79)
T ss_dssp TTEEEEEETTS
T ss_pred CCEEEEEEcCC
Confidence 55899999974
No 243
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=22.16 E-value=1.1e+02 Score=21.49 Aligned_cols=50 Identities=18% Similarity=0.239 Sum_probs=30.1
Q ss_pred CcHHHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhcCC-CccCCeeeee
Q 024889 43 TQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRLRPA 104 (261)
Q Consensus 43 ~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~~n-~~i~Gr~~~v 104 (261)
-+|++|+++++.|-+- +..- -..|...+.++.++|.+.-. .+|+-|.++|
T Consensus 33 ktedelkkyleefrke----------sqni--kvlilvsndeeldkakelaqkmeidvrtrkv 83 (110)
T 2kpo_A 33 KTEDELKKYLEEFRKE----------SQNI--KVLILVSNDEELDKAKELAQKMEIDVRTRKV 83 (110)
T ss_dssp CSHHHHHHHHHHHTSS----------TTSE--EEEEEESSHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ccHHHHHHHHHHHHhh----------ccCe--EEEEEEcChHHHHHHHHHHHhhceeeeeeec
Confidence 5789999998877421 0111 12344566777788776655 5666665443
No 244
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Probab=21.44 E-value=1.2e+02 Score=24.32 Aligned_cols=36 Identities=11% Similarity=0.312 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCCEEEEEEeecCCCCCcceEEEEEEcCHHHHHHHHhc
Q 024889 46 ETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92 (261)
Q Consensus 46 ~~L~~~F~~~G~I~~v~v~~d~~tg~skG~gFV~F~~~~~A~~Ai~~ 92 (261)
++++.+|+.|=.. + ..|-+.+-.|.+.++|.+.|++
T Consensus 133 ~~i~~fF~~YK~l---------e--~gK~v~v~gw~~~~~A~~~I~~ 168 (173)
T 3d53_A 133 KRIVHFFEHYKDL---------E--KGKWVKVTGWGDKVKAETLIKE 168 (173)
T ss_dssp HHHHHHHHHTTTT---------S--TTCCEEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHcCc---------c--CCCcEEEccCcCHHHHHHHHHH
Confidence 6788899988221 1 1234677889999999998875
No 245
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=20.78 E-value=46 Score=28.47 Aligned_cols=35 Identities=9% Similarity=0.192 Sum_probs=27.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeec
Q 024889 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITD 66 (261)
Q Consensus 32 ~~vfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d 66 (261)
..+.|+|||..++...|.++++....+..+.++..
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~Q 149 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQ 149 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEee
Confidence 45789999999999999999986556666665543
Done!