Query 024890
Match_columns 261
No_of_seqs 194 out of 1215
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 08:13:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024890.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024890hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03718 R_switched_Alx integ 100.0 2.5E-45 5.5E-50 339.5 17.6 149 110-258 28-176 (302)
2 PF03741 TerC: Integral membra 99.9 2E-25 4.4E-30 193.1 10.3 104 148-255 1-104 (183)
3 COG0861 TerC Membrane protein 99.9 1.3E-23 2.8E-28 190.9 12.2 101 131-233 2-104 (254)
4 TIGR03716 R_switched_YkoY inte 99.9 3.4E-23 7.4E-28 184.3 9.4 80 152-234 2-81 (215)
5 TIGR03717 R_switched_YjbE inte 99.8 5.5E-20 1.2E-24 158.7 11.9 86 147-235 2-87 (176)
6 PRK14013 hypothetical protein; 99.7 2.3E-17 5E-22 155.6 14.6 115 115-234 3-142 (338)
7 COG2899 Uncharacterized protei 99.7 1.6E-16 3.4E-21 148.1 11.7 120 113-234 2-149 (346)
8 PF04332 DUF475: Protein of un 98.9 2.5E-09 5.4E-14 100.0 6.8 72 159-232 1-97 (294)
9 PF03741 TerC: Integral membra 97.3 0.0033 7.1E-08 55.0 11.1 71 149-228 111-182 (183)
10 TIGR03716 R_switched_YkoY inte 97.2 0.0044 9.6E-08 56.0 10.5 74 148-230 100-174 (215)
11 TIGR03717 R_switched_YjbE inte 97.1 0.0062 1.3E-07 53.1 11.0 74 149-229 102-175 (176)
12 PRK10995 inner membrane protei 97.1 0.0046 9.9E-08 55.2 10.2 70 159-230 22-95 (221)
13 COG0861 TerC Membrane protein 96.9 0.02 4.2E-07 53.0 12.4 71 151-230 141-212 (254)
14 PRK10323 cysteine/O-acetylseri 96.9 0.021 4.6E-07 49.3 11.9 70 157-230 20-94 (195)
15 PF01914 MarC: MarC family int 96.8 0.0098 2.1E-07 52.6 9.6 71 158-230 17-91 (203)
16 TIGR00427 membrane protein, Ma 96.8 0.01 2.3E-07 52.5 9.6 71 158-230 20-94 (201)
17 PRK10739 putative antibiotic t 96.6 0.016 3.5E-07 51.5 9.4 71 158-230 17-91 (197)
18 PRK11111 hypothetical protein; 96.6 0.018 3.9E-07 51.7 9.5 69 159-229 24-96 (214)
19 COG2095 MarC Multiple antibiot 96.3 0.025 5.4E-07 50.7 9.0 73 156-230 18-94 (203)
20 PRK10229 threonine efflux syst 96.1 0.08 1.7E-06 45.6 10.4 77 150-230 12-93 (206)
21 COG1280 RhtB Putative threonin 95.9 0.099 2.1E-06 46.0 10.5 76 151-230 14-94 (208)
22 PRK09304 arginine exporter pro 95.9 0.15 3.3E-06 44.3 11.6 78 147-230 9-91 (207)
23 TIGR00948 2a75 L-lysine export 95.7 0.11 2.5E-06 43.7 9.7 67 158-230 6-77 (177)
24 TIGR03718 R_switched_Alx integ 95.7 0.044 9.5E-07 52.1 7.9 70 151-229 199-269 (302)
25 PRK10520 rhtB homoserine/homos 95.5 0.27 5.8E-06 42.4 11.4 73 152-230 15-94 (205)
26 PF01810 LysE: LysE type trans 94.8 0.25 5.4E-06 41.5 9.0 68 157-230 7-81 (191)
27 PRK10958 leucine export protei 94.7 0.38 8.2E-06 42.2 10.3 70 155-230 22-98 (212)
28 PF03596 Cad: Cadmium resistan 94.7 0.18 3.8E-06 45.1 8.2 72 158-231 5-78 (191)
29 TIGR00949 2A76 The Resistance 94.6 0.35 7.7E-06 40.6 9.4 65 159-229 4-75 (185)
30 COG1971 Predicted membrane pro 94.3 0.41 8.9E-06 43.1 9.6 81 146-229 2-87 (190)
31 COG1279 Lysine efflux permease 93.2 1 2.3E-05 40.9 10.3 75 147-230 9-91 (202)
32 PRK11469 hypothetical protein; 92.3 1.7 3.6E-05 38.4 10.1 81 146-229 2-87 (188)
33 PRK11469 hypothetical protein; 92.0 2.4 5.2E-05 37.4 10.8 98 123-229 70-184 (188)
34 TIGR02840 spore_YtaF putative 91.5 1.9 4.2E-05 38.3 9.8 76 150-229 3-81 (206)
35 COG1971 Predicted membrane pro 90.7 4.9 0.00011 36.3 11.5 100 122-229 69-186 (190)
36 COG2119 Predicted membrane pro 89.9 1.4 2.9E-05 39.9 7.3 67 159-230 17-86 (190)
37 PF07690 MFS_1: Major Facilita 88.9 12 0.00027 32.2 12.2 71 152-224 94-166 (352)
38 TIGR00779 cad cadmium resistan 88.2 0.74 1.6E-05 41.4 4.5 73 158-234 5-80 (193)
39 COG4300 CadD Predicted permeas 87.8 3.1 6.8E-05 37.9 8.1 87 147-236 5-94 (205)
40 TIGR00900 2A0121 H+ Antiporter 87.8 17 0.00037 31.3 15.7 57 152-210 101-157 (365)
41 TIGR00901 2A0125 AmpG-related 84.2 30 0.00064 30.8 12.6 59 149-209 89-147 (356)
42 PRK14013 hypothetical protein; 81.4 14 0.0003 36.2 9.8 77 145-229 223-301 (338)
43 TIGR00920 2A060605 3-hydroxy-3 80.8 22 0.00047 38.8 11.9 126 122-249 97-261 (886)
44 PRK12392 bacteriochlorophyll c 78.8 52 0.0011 31.5 12.8 33 109-141 89-121 (331)
45 PF02460 Patched: Patched fami 77.7 18 0.00038 37.8 10.0 78 152-229 286-385 (798)
46 TIGR02840 spore_YtaF putative 74.6 62 0.0014 28.8 11.4 71 147-227 128-206 (206)
47 PRK10019 nickel/cobalt efflux 72.1 63 0.0014 30.7 11.3 51 118-168 8-58 (279)
48 PRK10213 nepI ribonucleoside t 70.3 92 0.002 28.9 15.3 53 156-210 121-173 (394)
49 PF04632 FUSC: Fusaric acid re 66.4 98 0.0021 30.9 11.9 95 120-226 341-435 (650)
50 PRK10473 multidrug efflux syst 66.2 1E+02 0.0022 27.9 14.2 57 158-216 106-164 (392)
51 PF11298 DUF3099: Protein of u 62.8 39 0.00085 26.2 6.6 50 176-227 11-62 (73)
52 KOG2881 Predicted membrane pro 61.2 42 0.0009 32.4 7.8 66 159-229 82-150 (294)
53 PRK10489 enterobactin exporter 59.6 1.4E+02 0.0031 27.3 13.3 35 173-209 340-376 (417)
54 TIGR01937 nqrB NADH:ubiquinone 59.3 81 0.0018 31.7 9.8 56 144-200 126-189 (413)
55 PRK06080 1,4-dihydroxy-2-napht 58.5 1.5E+02 0.0032 27.1 11.8 30 109-138 81-110 (293)
56 PRK12884 ubiA prenyltransferas 57.1 1.5E+02 0.0032 26.7 11.0 27 109-135 76-102 (279)
57 PRK08633 2-acyl-glycerophospho 56.5 2.6E+02 0.0057 29.4 14.5 50 156-207 116-165 (1146)
58 TIGR00918 2A060602 The Eukaryo 56.2 1.6E+02 0.0036 33.1 12.3 73 153-226 466-561 (1145)
59 PRK11102 bicyclomycin/multidru 54.0 1.6E+02 0.0035 26.2 14.0 61 156-218 92-154 (377)
60 PRK10621 hypothetical protein; 53.1 1.7E+02 0.0038 26.3 11.7 37 193-229 86-124 (266)
61 PRK03545 putative arabinose tr 51.9 1.9E+02 0.0041 26.3 14.3 50 166-217 120-171 (390)
62 PRK05349 Na(+)-translocating N 51.4 1.2E+02 0.0027 30.4 9.6 49 144-193 125-180 (405)
63 PF03899 ATP_synt_I: ATP synth 50.6 1E+02 0.0022 22.9 9.7 72 131-208 13-86 (100)
64 PF06963 FPN1: Ferroportin1 (F 50.5 1.8E+02 0.0039 29.0 10.6 19 113-131 251-269 (432)
65 TIGR00844 c_cpa1 na(+)/h(+) an 50.3 3.1E+02 0.0068 30.0 12.9 48 156-204 261-312 (810)
66 TIGR00894 2A0114euk Na(+)-depe 49.3 2.3E+02 0.0049 26.5 13.7 61 155-217 143-206 (465)
67 PRK10649 hypothetical protein; 48.1 2.5E+02 0.0054 28.9 11.5 51 136-190 25-79 (577)
68 COG2215 ABC-type uncharacteriz 47.6 2.5E+02 0.0055 27.3 10.7 30 123-152 54-83 (303)
69 PRK12887 ubiA tocopherol phyty 47.5 1.9E+02 0.0042 27.2 9.9 23 110-132 93-115 (308)
70 PRK04375 protoheme IX farnesyl 45.4 2.5E+02 0.0055 26.0 10.3 24 109-132 85-108 (296)
71 TIGR00899 2A0120 sugar efflux 44.8 2.2E+02 0.0047 25.0 12.6 57 160-218 104-164 (375)
72 TIGR00917 2A060601 Niemann-Pic 44.5 5.2E+02 0.011 29.3 14.6 19 152-170 643-661 (1204)
73 PF01040 UbiA: UbiA prenyltran 44.3 1.4E+02 0.003 25.6 7.8 24 109-132 64-87 (257)
74 PRK09573 (S)-2,3-di-O-geranylg 41.9 2.6E+02 0.0057 25.4 9.6 26 109-134 76-101 (279)
75 PF02659 DUF204: Domain of unk 40.8 1.4E+02 0.003 21.5 8.3 14 210-223 54-67 (67)
76 TIGR00806 rfc RFC reduced fola 40.7 1.9E+02 0.004 30.0 9.2 61 147-210 115-178 (511)
77 PRK11902 ampG muropeptide tran 40.6 2.9E+02 0.0063 25.3 13.4 64 155-220 106-172 (402)
78 PRK06433 NADH dehydrogenase su 39.7 1.7E+02 0.0037 23.1 7.0 44 193-236 42-85 (88)
79 PRK13592 ubiA prenyltransferas 38.7 3.5E+02 0.0076 26.2 10.2 42 88-135 70-111 (299)
80 COG0730 Predicted permeases [G 38.5 2.8E+02 0.0061 24.5 9.9 36 195-230 84-121 (258)
81 PF06011 TRP: Transient recept 37.5 4E+02 0.0086 26.0 14.2 18 183-200 201-218 (438)
82 COG2836 Uncharacterized conser 37.2 1.8E+02 0.0038 27.4 7.7 71 181-253 54-131 (232)
83 COG0738 FucP Fucose permease [ 36.5 3.7E+02 0.0081 27.3 10.4 19 136-154 246-265 (422)
84 TIGR00710 efflux_Bcr_CflA drug 36.5 3E+02 0.0065 24.2 13.9 49 160-210 110-158 (385)
85 PF12349 Sterol-sensing: Stero 36.0 2.6E+02 0.0057 23.5 13.1 51 121-171 12-63 (153)
86 PF11286 DUF3087: Protein of u 35.3 1.3E+02 0.0029 26.8 6.3 55 175-229 8-72 (165)
87 COG4239 ABC-type uncharacteriz 35.1 4E+02 0.0087 26.3 9.9 72 100-171 124-198 (341)
88 PRK11652 emrD multidrug resist 35.1 3.4E+02 0.0075 24.5 14.0 37 174-210 125-161 (394)
89 TIGR00711 efflux_EmrB drug res 34.6 3.7E+02 0.0081 24.8 11.9 47 162-210 109-155 (485)
90 PRK12895 ubiA prenyltransferas 34.0 4.1E+02 0.0088 25.0 10.4 22 109-130 78-99 (286)
91 PRK01024 Na(+)-translocating N 33.9 3.4E+02 0.0074 28.2 9.7 31 160-191 149-179 (503)
92 PRK06814 acylglycerophosphoeth 33.6 6.2E+02 0.013 27.0 13.3 49 160-210 125-173 (1140)
93 PRK10263 DNA translocase FtsK; 32.9 3.9E+02 0.0084 31.1 10.7 28 185-212 158-185 (1355)
94 PF01384 PHO4: Phosphate trans 32.9 4.4E+02 0.0095 25.1 10.6 115 111-229 18-149 (326)
95 TIGR00898 2A0119 cation transp 32.0 4.4E+02 0.0095 24.8 13.4 55 161-218 198-252 (505)
96 PF05977 MFS_3: Transmembrane 32.0 5.5E+02 0.012 25.9 14.5 93 114-208 74-166 (524)
97 PF06011 TRP: Transient recept 31.7 4.3E+02 0.0093 25.7 9.8 80 115-206 296-375 (438)
98 CHL00016 ndhG NADH dehydrogena 30.9 2.3E+02 0.0051 24.8 7.2 38 194-231 47-84 (182)
99 PRK14995 methyl viologen resis 30.4 5E+02 0.011 25.0 13.4 38 175-214 125-166 (495)
100 PLN02878 homogentisate phytylt 30.1 5E+02 0.011 24.9 13.6 38 92-135 51-88 (280)
101 PF06541 DUF1113: Protein of u 30.1 3.5E+02 0.0075 23.0 8.7 54 144-204 71-129 (157)
102 PRK10457 hypothetical protein; 29.9 1E+02 0.0022 24.2 4.3 46 182-227 32-80 (82)
103 PRK13106 ubiA prenyltransferas 28.7 5E+02 0.011 24.5 9.4 19 109-127 90-108 (300)
104 TIGR00880 2_A_01_02 Multidrug 28.5 2.3E+02 0.0049 20.4 13.3 69 152-222 60-130 (141)
105 TIGR01476 chlor_syn_BchG bacte 28.4 4.6E+02 0.0099 23.9 10.3 27 109-135 77-103 (283)
106 COG3763 Uncharacterized protei 28.2 88 0.0019 24.5 3.6 21 119-139 4-24 (71)
107 PF04678 DUF607: Protein of un 27.4 3E+02 0.0066 23.9 7.2 48 178-227 89-141 (180)
108 PRK07946 putative monovalent c 27.2 4.5E+02 0.0097 23.4 9.4 106 122-241 6-116 (163)
109 PRK12505 putative monovalent c 27.1 2.6E+02 0.0056 24.6 6.7 80 125-210 27-110 (159)
110 PRK12882 ubiA prenyltransferas 26.9 4.8E+02 0.01 23.6 10.5 26 109-134 77-102 (276)
111 PF11127 DUF2892: Protein of u 26.5 2E+02 0.0043 20.7 5.1 16 209-224 33-48 (66)
112 PF02535 Zip: ZIP Zinc transpo 26.4 4.7E+02 0.01 23.4 15.1 21 210-230 268-288 (317)
113 TIGR00751 menA 1,4-dihydroxy-2 26.3 5.4E+02 0.012 24.0 12.6 31 110-140 72-102 (284)
114 PF09788 Tmemb_55A: Transmembr 26.1 2.2E+02 0.0047 27.2 6.4 52 175-226 191-250 (256)
115 PRK10489 enterobactin exporter 26.0 5.2E+02 0.011 23.7 12.8 47 174-220 139-187 (417)
116 PRK13592 ubiA prenyltransferas 25.9 4.4E+02 0.0095 25.5 8.5 80 111-200 212-296 (299)
117 PF08507 COPI_assoc: COPI asso 25.7 3.8E+02 0.0082 22.0 12.5 43 183-226 59-102 (136)
118 TIGR00245 conserved hypothetic 25.1 4.8E+02 0.01 24.2 8.4 17 147-163 43-59 (248)
119 PF00689 Cation_ATPase_C: Cati 25.1 3.9E+02 0.0084 22.0 9.3 22 179-200 124-145 (182)
120 PF06900 DUF1270: Protein of u 24.9 2.5E+02 0.0054 21.0 5.2 26 113-138 4-29 (53)
121 KOG2532 Permease of the major 24.9 7E+02 0.015 24.9 11.9 62 156-220 141-206 (466)
122 COG5249 RER1 Golgi protein inv 24.6 1.6E+02 0.0035 26.4 5.0 42 184-228 36-77 (180)
123 COG1173 DppC ABC-type dipeptid 24.2 5.9E+02 0.013 24.0 9.0 86 100-188 69-158 (289)
124 PRK03557 zinc transporter ZitB 24.0 2.2E+02 0.0047 26.6 6.0 19 211-229 189-207 (312)
125 PF01169 UPF0016: Uncharacteri 23.6 3.4E+02 0.0074 20.8 7.1 59 159-220 14-75 (78)
126 PF04024 PspC: PspC domain; I 23.6 2E+02 0.0043 21.2 4.6 30 192-231 30-59 (61)
127 COG2962 RarD Predicted permeas 23.3 7E+02 0.015 24.3 10.0 50 121-170 148-197 (293)
128 PF03203 MerC: MerC mercury re 23.2 1.6E+02 0.0035 23.7 4.5 43 175-222 60-108 (116)
129 COG1269 NtpI Archaeal/vacuolar 23.0 2.4E+02 0.0052 29.6 6.7 58 160-226 456-513 (660)
130 COG0428 Predicted divalent hea 22.9 3.8E+02 0.0083 24.8 7.4 78 149-230 149-234 (266)
131 PRK15402 multidrug efflux syst 22.9 5.8E+02 0.013 23.2 12.9 58 159-218 117-176 (406)
132 PF06783 UPF0239: Uncharacteri 22.8 82 0.0018 25.4 2.6 26 178-203 17-42 (85)
133 PRK05951 ubiA prenyltransferas 22.7 6.2E+02 0.013 23.5 12.2 32 109-140 84-115 (296)
134 PRK10755 sensor protein BasS/P 22.7 5.7E+02 0.012 23.0 9.9 35 112-146 2-36 (356)
135 PRK10091 MFS transport protein 22.5 5.9E+02 0.013 23.1 14.1 44 174-217 120-165 (382)
136 COG2155 Uncharacterized conser 22.4 96 0.0021 24.7 2.9 49 182-230 18-68 (79)
137 TIGR00891 2A0112 putative sial 22.3 5.4E+02 0.012 22.6 13.7 47 159-207 116-162 (405)
138 PRK03893 putative sialic acid 22.2 6.5E+02 0.014 23.5 12.8 48 161-210 126-173 (496)
139 PRK10631 p-hydroxybenzoic acid 22.0 9.8E+02 0.021 25.5 11.8 97 118-226 352-449 (652)
140 PF01925 TauE: Sulfite exporte 21.7 5.1E+02 0.011 22.1 8.3 37 194-230 73-111 (240)
141 TIGR00895 2A0115 benzoate tran 21.5 5.5E+02 0.012 22.4 10.1 51 158-210 120-170 (398)
142 PRK09917 hypothetical protein; 21.2 4.3E+02 0.0092 22.9 6.9 48 145-198 4-53 (157)
143 PF14159 CAAD: CAAD domains of 21.2 4.2E+02 0.0092 21.0 6.5 58 175-232 12-73 (90)
144 COG5436 Predicted integral mem 21.1 2E+02 0.0044 26.0 5.0 37 180-216 4-40 (182)
145 PRK01030 tetrahydromethanopter 20.7 3.4E+02 0.0074 26.0 6.6 55 175-229 188-243 (264)
146 COG3329 Predicted permease [Ge 20.7 3.1E+02 0.0068 27.3 6.5 113 64-196 176-292 (372)
147 PF05977 MFS_3: Transmembrane 20.4 9E+02 0.019 24.5 14.1 50 173-222 335-386 (524)
No 1
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=100.00 E-value=2.5e-45 Score=339.50 Aligned_cols=149 Identities=42% Similarity=0.683 Sum_probs=144.7
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHhHHHhhcChhhHHHHHHHHHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHH
Q 024890 110 GRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAG 189 (261)
Q Consensus 110 ~~~s~keAl~wS~~wV~LAllFg~~i~~~~G~~~a~eFltgylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~g 189 (261)
.++++|||+.||++|+++|++||+++|++.|.+.+.||+|||++|++||+||+|||+++|++|++|+++|||+|+||++|
T Consensus 28 ~~~~~kea~~ws~~~v~la~~F~~~i~~~~g~~~~~~f~tg~llE~~LSvDN~fV~~~if~~f~vP~~~q~rvL~~Gi~g 107 (302)
T TIGR03718 28 HVVSFKEALLWSAFWVSLALLFGGGVWFYLGGEAALEFLTGYLIEKSLSVDNLFVFLLIFSYFAVPREYQHRVLFWGILG 107 (302)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhccCCCCCCCccHHHHHhhhccccccCccce
Q 024890 190 AIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSRICCV 258 (261)
Q Consensus 190 Aiv~RiIfI~~G~~Ll~~f~~I~~ifG~fLLytgiK~~~~~eee~d~~~n~ivr~irk~lPvT~~y~~~ 258 (261)
|++||++||++|++++++|+|++++||+||+|+|+|++++++|++|+++|..+|++||++|+|++||+-
T Consensus 108 AlvlR~i~i~~g~~Li~~f~wi~~ifG~fLi~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~ 176 (302)
T TIGR03718 108 ALVLRAIFIALGAALIEQFHWVLYIFGAFLLYTGIKMLFEGDEEDDPENNPLVRLLRRVLPVTDKYHGD 176 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccccCccccHHHHHHHhhcCCCccccCC
Confidence 999999999999999999999999999999999999999887777889999999999999999999983
No 2
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=99.92 E-value=2e-25 Score=193.14 Aligned_cols=104 Identities=35% Similarity=0.537 Sum_probs=95.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhh
Q 024890 148 FAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLF 227 (261)
Q Consensus 148 ltgylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f~~I~~ifG~fLLytgiK~~ 227 (261)
+|+|++|++||+||++|+++++++ +|+++|+|+++||++||+++|++|+++++++++.|+|++++||+||+|+|+|++
T Consensus 1 ltl~~lE~~Ls~DN~~vi~~~~~~--lp~~~r~kal~~Gi~~A~~lR~~~i~~~~~ll~~~~~i~~igG~~Ll~~a~k~~ 78 (183)
T PF03741_consen 1 LTLVLLEIVLSIDNAFVIAMIFRK--LPPEQRRKALFWGIIGAIVLRIIFIFLASWLLSIFPWILLIGGLFLLYIAIKLL 78 (183)
T ss_pred CchhhhhHHHHhhHHHHHHHHHhC--CCHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999995 999999999999999999999999999999999779999999999999999999
Q ss_pred hccCCCCCCCccHHHHHhhhccccccCc
Q 024890 228 ASEEDDTDLSDNFIVKTCQRFIPVTSRI 255 (261)
Q Consensus 228 ~~~eee~d~~~n~ivr~irk~lPvT~~y 255 (261)
++++ ++|+ +|...+..++..|.++++
T Consensus 79 ~~~~-~~d~-~~~~~~~~~~~~~~~~~~ 104 (183)
T PF03741_consen 79 HEER-DEDP-ENAEVEEEKKFFPVSKSS 104 (183)
T ss_pred Hhcc-cccc-chhhhhhhhccccchhHH
Confidence 9876 4455 888888888888877654
No 3
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.3e-23 Score=190.87 Aligned_cols=101 Identities=23% Similarity=0.272 Sum_probs=90.0
Q ss_pred HHhHHHhhcChh--hHHHHHHHHHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024890 131 FGLGVGFIEGAS--KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF 208 (261)
Q Consensus 131 Fg~~i~~~~G~~--~a~eFltgylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f 208 (261)
|+...|+..+.+ .+.+|+|++++|++||+||++|+++++++ +|++||||+++||++||++||+++++.++++++.+
T Consensus 2 f~~~~~~~~~~~~~~~~~l~tl~~lE~vL~iDN~iviai~~~~--Lp~~qr~ral~~Gl~~A~v~R~~ll~~~s~Ll~l~ 79 (254)
T COG0861 2 FGIALYMEWLADPAAWVALLTLILLEIVLGIDNAIVIAILASK--LPPKQRKKALFIGLAGALVLRIILLASISWLLTLT 79 (254)
T ss_pred chHHHHHHHhcCchHHHHHHHHHHHHHHHHhhHHHHHHHHHhh--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555555444 44699999999999999999999999995 89999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhhhccCCC
Q 024890 209 EAVNLVLAGILLFSSFKLFASEEDD 233 (261)
Q Consensus 209 ~~I~~ifG~fLLytgiK~~~~~eee 233 (261)
+|++++||++|+|+++||+.+++++
T Consensus 80 ~~l~~~fg~~L~~~~~~ll~~~~~~ 104 (254)
T COG0861 80 QPLLYIFGLYLLWRDIKLLLGGLFL 104 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhH
Confidence 9999999999999999999886544
No 4
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=99.89 E-value=3.4e-23 Score=184.29 Aligned_cols=80 Identities=31% Similarity=0.503 Sum_probs=75.3
Q ss_pred HHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhccC
Q 024890 152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEE 231 (261)
Q Consensus 152 lLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f~~I~~ifG~fLLytgiK~~~~~e 231 (261)
++|++||+||++|++++++ ++|+++|+|+++||++||+++|++|+++|+++++ ++|++++||+||+|+|+|++++++
T Consensus 2 ~lE~vLS~DN~~via~~~~--~LP~~~r~~al~~Gi~gAivlR~i~i~~~~~Ll~-~~~l~~iGG~~Ll~~~~k~l~~~~ 78 (215)
T TIGR03716 2 ILEGLLSADNALVLAVMVK--HLPEKQRKKALFYGLIGAYVFRFIALFLASFLIK-FWWIKAIGALYLLYLAIKHFRKKK 78 (215)
T ss_pred chhHHHHhhHHHHHHHHHh--hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6899999999999999999 5999999999999999999999999999999997 889999999999999999999865
Q ss_pred CCC
Q 024890 232 DDT 234 (261)
Q Consensus 232 ee~ 234 (261)
+++
T Consensus 79 ~~~ 81 (215)
T TIGR03716 79 KGK 81 (215)
T ss_pred ccc
Confidence 443
No 5
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=99.83 E-value=5.5e-20 Score=158.66 Aligned_cols=86 Identities=26% Similarity=0.419 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 024890 147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKL 226 (261)
Q Consensus 147 FltgylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f~~I~~ifG~fLLytgiK~ 226 (261)
+++..++|.+||+||++|++++.+ ++|+++|+|++.||+++|+++|++|+++|.++++ ++|+.++||++|+|+|+||
T Consensus 2 ~~~li~le~vLs~DN~~vi~~~t~--~lp~~~r~~~~~~G~~~A~vlr~if~~~G~~ll~-~~~~~iaGGllLl~ia~~m 78 (176)
T TIGR03717 2 LLQIIAIDLVLGGDNAVVIALAAR--NLPAHQRKKAIFWGTAGAIVLRILLTAVAVYLLA-IPFLKLIGGLLLLWIGWKL 78 (176)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999877 7999999999999999999999999999999997 8999999999999999999
Q ss_pred hhccCCCCC
Q 024890 227 FASEEDDTD 235 (261)
Q Consensus 227 ~~~~eee~d 235 (261)
++++++++|
T Consensus 79 l~~~~~~~~ 87 (176)
T TIGR03717 79 LLEEEEEQG 87 (176)
T ss_pred Hhccccccc
Confidence 987654444
No 6
>PRK14013 hypothetical protein; Provisional
Probab=99.74 E-value=2.3e-17 Score=155.60 Aligned_cols=115 Identities=24% Similarity=0.246 Sum_probs=100.3
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHhhcChhhHHHHHHHHHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHH-HH
Q 024890 115 TSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VF 193 (261)
Q Consensus 115 keAl~wS~~wV~LAllFg~~i~~~~G~~~a~eFltgylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAi-v~ 193 (261)
.+.++||++++.++++.+.++++ .......++..++|++||+||++|++.+.+ ++|+++|+|+|.||+++|+ .|
T Consensus 3 ~~~f~~s~~~t~~~l~~~~~~g~---~~~~~~~~~L~vLEisLsfDNaIvnA~vl~--~m~~~wq~~fl~~Gi~iAvFgm 77 (338)
T PRK14013 3 LRYFRWSFIVTVIGLVLAAWLGG---LSALFIVAILAVLEISLSFDNAVVNATVLK--RMSPKWQKRFLTWGILIAVFGM 77 (338)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHh--hCCHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999998887764 456667888899999999999999999999 6999999999999999998 89
Q ss_pred HHHHHHHHHHHHHh----------------h--------hHHHHHHHHHHHHHHhhhhhccCCCC
Q 024890 194 RLSLILLGTATLQR----------------F--------EAVNLVLAGILLFSSFKLFASEEDDT 234 (261)
Q Consensus 194 RiIfI~~G~~Ll~~----------------f--------~~I~~ifG~fLLytgiK~~~~~eee~ 234 (261)
|++|+++.+++... | +.+..+||+||++.+.+.+.++|+|.
T Consensus 78 Rlvfp~~iv~i~a~~~p~~~~~~a~s~~~~Y~~~l~~ah~~I~~fGG~FLlmvfL~f~fd~ek~~ 142 (338)
T PRK14013 78 RLVFPLLIVAVAAGLGPIEALKLALNDPDEYAEILTDAHPQIAAFGGTFLLMVFLNFFFDEEKDV 142 (338)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHcCCchhHHHHHhhhhHHHHHHHHHHHHHHHHHHhcCcCCCc
Confidence 99999998888762 1 24788999999999999999766554
No 7
>COG2899 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.69 E-value=1.6e-16 Score=148.12 Aligned_cols=120 Identities=24% Similarity=0.293 Sum_probs=102.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHhHHHhhcChhhHHHH-HHH--HHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHH
Q 024890 113 SYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEF-FAG--YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAG 189 (261)
Q Consensus 113 s~keAl~wS~~wV~LAllFg~~i~~~~G~~~a~eF-ltg--ylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~g 189 (261)
+..+.+.||.+.+++|++.+.|.+|.+|++.+..+ ++. .++|+|||.||++|+|-+.+ ++.+.||||.|.|||++
T Consensus 2 ~~~r~F~~s~i~Tvi~L~~a~w~gy~~~G~~~~~l~i~~vLavLEiSLSFDNAIvNA~iLk--~MS~~Wqk~FLT~GIlI 79 (346)
T COG2899 2 TAFRYFGWSFIVTVIALALAAWLGYEYGGTMWTALFICAVLAVLEISLSFDNAIVNAAILK--DMSPFWQKRFLTWGILI 79 (346)
T ss_pred chHhhcchHHHHHHHHHHHHHHHhHhhcCchHHHHHHHHHHHHhhhheechHHHhhHHHHH--hccHHHHHHHHHHHHHH
Confidence 45788999999999999999999998887655443 333 58999999999999999999 59999999999999999
Q ss_pred HHH-HHHHHHHHHHHHHHh------------------------hhHHHHHHHHHHHHHHhhhhhccCCCC
Q 024890 190 AIV-FRLSLILLGTATLQR------------------------FEAVNLVLAGILLFSSFKLFASEEDDT 234 (261)
Q Consensus 190 Aiv-~RiIfI~~G~~Ll~~------------------------f~~I~~ifG~fLLytgiK~~~~~eee~ 234 (261)
|++ ||++|.++-++.-.. .+.|-.+||.||++.+.+++.+.|+|.
T Consensus 80 AVFGMRlvFPl~IV~vaa~~~pi~a~~lAl~~P~~Y~~ii~~aH~~IAAFGG~FLlMv~L~fffd~erd~ 149 (346)
T COG2899 80 AVFGMRLVFPLVIVAVAAGLDPIRAMKLALEPPESYAKIITDAHPQIAAFGGTFLLMVFLDFFFDHERDV 149 (346)
T ss_pred HHHhhHHHHHHHHHHHhcCCChHHHHHHHccCcHHHHHHHHhcCchhhhhhhHHHHHHHHHHhcCccccc
Confidence 995 999999987766542 234788999999999999999866554
No 8
>PF04332 DUF475: Protein of unknown function (DUF475); InterPro: IPR007427 This entry contains proteins that are predicted to be an integral membrane proteins with multiple transmembrane domains.
Probab=98.90 E-value=2.5e-09 Score=99.99 Aligned_cols=72 Identities=26% Similarity=0.373 Sum_probs=63.2
Q ss_pred hhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHh----------------h--------hHHHH
Q 024890 159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIV-FRLSLILLGTATLQR----------------F--------EAVNL 213 (261)
Q Consensus 159 vDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv-~RiIfI~~G~~Ll~~----------------f--------~~I~~ 213 (261)
.||++|+|.+.+ ++.+.||++.|.|||+.|++ ||++|+++.+++... | +.+..
T Consensus 1 FDNAVVNA~vLk--~Ms~~Wq~~FLtwGIlIAVFGMRlvFPllIV~~~a~lgp~ea~~lA~~~p~~Y~~~l~~ah~~Iaa 78 (294)
T PF04332_consen 1 FDNAVVNATVLK--RMSPFWQRRFLTWGILIAVFGMRLVFPLLIVWVTAGLGPIEALRLALNDPPQYAEILEDAHPQIAA 78 (294)
T ss_pred CCchhhhHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHhCCHHHHHHHHHhhhHHHHH
Confidence 599999999999 59999999999999999995 999999998887652 1 23788
Q ss_pred HHHHHHHHHHhhhhhccCC
Q 024890 214 VLAGILLFSSFKLFASEED 232 (261)
Q Consensus 214 ifG~fLLytgiK~~~~~ee 232 (261)
+||.||++.+.+.+.++++
T Consensus 79 FGG~FLlmvfL~f~f~~~k 97 (294)
T PF04332_consen 79 FGGMFLLMVFLDFFFDEEK 97 (294)
T ss_pred HhHHHHHHHHHheeecCCc
Confidence 9999999999999997655
No 9
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=97.30 E-value=0.0033 Score=55.03 Aligned_cols=71 Identities=24% Similarity=0.240 Sum_probs=57.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhh
Q 024890 149 AGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIV-FRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLF 227 (261)
Q Consensus 149 tgylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv-~RiIfI~~G~~Ll~~f~~I~~ifG~fLLytgiK~~ 227 (261)
+.-+.+.+.|+||+.....+.+ +--.+..|.+.|+. ||...-. -+.++++|+++.+.++++|.|+|.||+
T Consensus 111 ~I~~~DlvfSlDSV~a~~~it~--------~~~iv~~g~i~si~~m~~~~~~-~~~~l~~~p~l~~~~~~~L~~ig~~li 181 (183)
T PF03741_consen 111 QIELADLVFSLDSVLAAVGITD--------DFFIVITGNIISILLMRFLSFL-LAKLLERFPYLKYLAAAILGFIGVKLI 181 (183)
T ss_pred HHHHHHHHHHHhHHHHHHHHhh--------hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457899999999998887763 55678889888884 7766544 556778999999999999999999997
Q ss_pred h
Q 024890 228 A 228 (261)
Q Consensus 228 ~ 228 (261)
.
T Consensus 182 ~ 182 (183)
T PF03741_consen 182 L 182 (183)
T ss_pred h
Confidence 5
No 10
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=97.15 E-value=0.0044 Score=55.98 Aligned_cols=74 Identities=19% Similarity=0.261 Sum_probs=60.2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 024890 148 FAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKL 226 (261)
Q Consensus 148 ltgylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAi-v~RiIfI~~G~~Ll~~f~~I~~ifG~fLLytgiK~ 226 (261)
.+..+.+.+.|+||+.....+.+ ..-.+..|.+.++ +||..--.+ +.++++|+++.+.+.++|.|+|.||
T Consensus 100 ~~I~~~DlvFSlDSV~A~~git~--------~~~ii~~g~~~sIl~lr~~s~~l-~~li~r~p~L~~~~~~iL~~ig~kL 170 (215)
T TIGR03716 100 LKVELMDIAFSVDSILAAVALSG--------QFWVVFLGGIIGILIMRFAATIF-VKLLERFPELETAAFLLIGWIGVKL 170 (215)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcc--------ChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457899999999988877754 3457888888888 588776665 6688899999999999999999999
Q ss_pred hhcc
Q 024890 227 FASE 230 (261)
Q Consensus 227 ~~~~ 230 (261)
+.+.
T Consensus 171 il~~ 174 (215)
T TIGR03716 171 LLET 174 (215)
T ss_pred HHHH
Confidence 8864
No 11
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=97.14 E-value=0.0062 Score=53.12 Aligned_cols=74 Identities=16% Similarity=0.135 Sum_probs=55.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhh
Q 024890 149 AGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFA 228 (261)
Q Consensus 149 tgylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f~~I~~ifG~fLLytgiK~~~ 228 (261)
...+.+.+.|+||+.....+.+. +-.++..|+..++.+=...--.-..++++|+++.+.++++|.|+|.||+.
T Consensus 102 ~I~~~D~~fS~DsV~a~~~~~~~-------~~~li~~g~~i~i~~m~~~s~~~~~~~~~~p~l~~~~~~~L~~ig~kl~~ 174 (176)
T TIGR03717 102 TIVIADAVMSLDNVLAVAGAAHG-------HLGLLIFGLLLSIPIIVWGSTLILKLMDRFPWIIYIGAALLGYVAGEMIV 174 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33577999999999887766652 44577888877774333333345667779999999999999999999986
Q ss_pred c
Q 024890 229 S 229 (261)
Q Consensus 229 ~ 229 (261)
+
T Consensus 175 ~ 175 (176)
T TIGR03717 175 T 175 (176)
T ss_pred C
Confidence 3
No 12
>PRK10995 inner membrane protein; Provisional
Probab=97.12 E-value=0.0046 Score=55.15 Aligned_cols=70 Identities=11% Similarity=0.192 Sum_probs=61.7
Q ss_pred hhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHhhhhhcc
Q 024890 159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASE 230 (261)
Q Consensus 159 vDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f----~~I~~ifG~fLLytgiK~~~~~ 230 (261)
+.|+-+|....+ +.++++|+|+..-..+.|.+.=+++.+.|..+++-| +.....||++|++.|++|++++
T Consensus 22 ~g~~pif~~lt~--~~~~~~r~~ia~~~~~~a~~ill~f~~~G~~il~~fgIs~~a~rIaGGilL~~igi~ml~~~ 95 (221)
T PRK10995 22 LTTVALFLGLSG--NMTPEERNRQALMASVYVFAIMMVAFYAGQLVMSTFGISIPGLRIAGGLIVAFIGFRMLFPQ 95 (221)
T ss_pred hhhHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 568888999988 589999999999999999998899999999999843 4689999999999999999764
No 13
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=96.88 E-value=0.02 Score=53.03 Aligned_cols=71 Identities=24% Similarity=0.273 Sum_probs=59.9
Q ss_pred HHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhc
Q 024890 151 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFAS 229 (261)
Q Consensus 151 ylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAi-v~RiIfI~~G~~Ll~~f~~I~~ifG~fLLytgiK~~~~ 229 (261)
.+++.+-|+||+.....+.+ +.-+++.|.+.|+ +||...-. -+.++++++++.+.+.++|+|+|.||+.+
T Consensus 141 ~i~D~vFSlDSV~Aa~g~~~--------~~~im~~a~i~aI~~m~~aa~~-l~~ll~r~p~l~~~~~~iL~~IG~kli~~ 211 (254)
T COG0861 141 ELADLVFSLDSVIAAVGMAG--------HPFVMVTAVIFAILVMRFAAFL-LARLLERHPTLKYLALVILLFIGVKLILE 211 (254)
T ss_pred HHHHHHHhhhHHHHHHHHhc--------CchHHHHHHHHHHHHHHHHHHH-HHHHHHHchHHHHHHHHHHHHHHHHHHHh
Confidence 57899999999998887774 4567999999999 57776544 45678899999999999999999999987
Q ss_pred c
Q 024890 230 E 230 (261)
Q Consensus 230 ~ 230 (261)
+
T Consensus 212 ~ 212 (254)
T COG0861 212 G 212 (254)
T ss_pred h
Confidence 5
No 14
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=96.88 E-value=0.021 Score=49.30 Aligned_cols=70 Identities=11% Similarity=0.045 Sum_probs=48.4
Q ss_pred hhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhH----HHHHHHHHHHHHHhhhhhcc
Q 024890 157 LSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQRFEA----VNLVLAGILLFSSFKLFASE 230 (261)
Q Consensus 157 LSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~-~Ll~~f~~----I~~ifG~fLLytgiK~~~~~ 230 (261)
=+-||++++..-.++ +. .+--....|+..+.+.=+++...|. .+++++++ ++++|++||+|.|+|+++.+
T Consensus 20 PGP~~~~v~~~~~~~-G~---r~a~~~~~G~~~g~~~~~~~~~~g~~~l~~~~p~~~~vlk~~Ga~YLlyLg~~~~~s~ 94 (195)
T PRK10323 20 PGPNNILALSSATSH-GF---RQSTRVLAGMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWAGAAYIVWLAWKIATSP 94 (195)
T ss_pred CChHHHHHHHHHHHh-CH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 377999999887763 11 1122355677777666555555555 56655554 78999999999999999864
No 15
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=96.82 E-value=0.0098 Score=52.64 Aligned_cols=71 Identities=17% Similarity=0.261 Sum_probs=63.0
Q ss_pred hhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHhhhhhcc
Q 024890 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASE 230 (261)
Q Consensus 158 SvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f----~~I~~ifG~fLLytgiK~~~~~ 230 (261)
-..|+.+|....+ +.++++|+|+..-..+.|.+.=.+|.++|-.+++-| +-....||+.|+..|++|+..+
T Consensus 17 P~g~ip~f~~lt~--~~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fgIsl~af~IaGGiiL~~ia~~ml~~~ 91 (203)
T PF01914_consen 17 PIGNIPIFLSLTK--GMSPKERRRIARRASIIAFIILLIFAFFGQLILNFFGISLPAFRIAGGIILFLIALEMLFGS 91 (203)
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3578889999998 589999999999999999999999999999999854 3589999999999999999764
No 16
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=96.79 E-value=0.01 Score=52.54 Aligned_cols=71 Identities=14% Similarity=0.319 Sum_probs=62.7
Q ss_pred hhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHhhhhhcc
Q 024890 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASE 230 (261)
Q Consensus 158 SvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f----~~I~~ifG~fLLytgiK~~~~~ 230 (261)
-..|+-+|....+ +.++++|+|+.....+.|.+.=++|.++|-.+++-| +-....||+.|+.+|++|+..+
T Consensus 20 Pig~ipvfl~lt~--~~~~~~r~~ia~~~~l~a~~ill~f~~~G~~iL~~fgIsl~afrIaGGiiL~~ia~~ml~~~ 94 (201)
T TIGR00427 20 PIGNIPIFISLTE--YYTAAERNKIAKKANISSFIILLIFLVFGDTILKLFGISIDAFRIAGGILLFTIAMDMLSGE 94 (201)
T ss_pred cchHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4678999999998 589999999999999999999999999999999844 3589999999999999998653
No 17
>PRK10739 putative antibiotic transporter; Provisional
Probab=96.60 E-value=0.016 Score=51.48 Aligned_cols=71 Identities=18% Similarity=0.295 Sum_probs=62.7
Q ss_pred hhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHhhhhhcc
Q 024890 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASE 230 (261)
Q Consensus 158 SvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f----~~I~~ifG~fLLytgiK~~~~~ 230 (261)
-..|+-+|..+.+ +.++++|+|+..-..+.|.+.=++|.++|-.+++-| +-....||+.|+..|++|+.++
T Consensus 17 Pig~ipiflslt~--~~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fGIsl~afrIAGGilL~~ial~ml~~~ 91 (197)
T PRK10739 17 PLGNLPIFMSVLK--HLEPKRRRAIMIRELLIALLVMLVFLFAGEKILAFLNLRTETVSISGGIILFLIAIKMIFPS 91 (197)
T ss_pred HhhHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4578899999998 589999999999999999988889999999999854 3589999999999999999765
No 18
>PRK11111 hypothetical protein; Provisional
Probab=96.56 E-value=0.018 Score=51.71 Aligned_cols=69 Identities=14% Similarity=0.190 Sum_probs=60.7
Q ss_pred hhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHhhhhhc
Q 024890 159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFAS 229 (261)
Q Consensus 159 vDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f----~~I~~ifG~fLLytgiK~~~~ 229 (261)
+.|+-+|....+ +.++++|+|+.....+.|.+.=++|.++|-++++-| +-....||+.|+.+|++|+..
T Consensus 24 ig~ipiflslt~--~~s~~~r~~ia~~a~l~a~~ill~f~~~G~~iL~~fGIsl~afrIaGGiiL~~ial~Ml~g 96 (214)
T PRK11111 24 VGILPVFISMTS--HQTAAERNKTNLTANLSVAIILLISLFLGDFILNLFGISIDSFRIAGGILVVTIAMSMISG 96 (214)
T ss_pred chhHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 568888999988 579999999999999999988889999999999844 358999999999999999965
No 19
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=96.34 E-value=0.025 Score=50.72 Aligned_cols=73 Identities=23% Similarity=0.295 Sum_probs=64.0
Q ss_pred HhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHhhhhhcc
Q 024890 156 SLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFE----AVNLVLAGILLFSSFKLFASE 230 (261)
Q Consensus 156 sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f~----~I~~ifG~fLLytgiK~~~~~ 230 (261)
+=...|+-+|..+.+ +.|+++|+|+..-..+.|.+.=.+|.++|-++++-|. -....||+.|.+.|++|+..+
T Consensus 18 ~dP~G~ipvf~slt~--~~~~~~r~~v~~ra~i~a~~ill~f~~~G~~il~~fgIsi~a~rIAGGilLf~ia~~ml~~~ 94 (203)
T COG2095 18 IDPIGNLPVFISLTK--GLSPEERNRVALRASIIALLILLVFLLLGEGILRFFGISIDAFRIAGGILLFLIALRMLFGP 94 (203)
T ss_pred hCCCchhHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHhhhHHHHHHHHHHhcCC
Confidence 445789999999999 5899999999999999999999999999999998443 478999999999999998764
No 20
>PRK10229 threonine efflux system; Provisional
Probab=96.06 E-value=0.08 Score=45.55 Aligned_cols=77 Identities=14% Similarity=0.148 Sum_probs=52.1
Q ss_pred HHHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHhhh----HHHHHHHHHHHHHHh
Q 024890 150 GYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTA-TLQRFE----AVNLVLAGILLFSSF 224 (261)
Q Consensus 150 gylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~-Ll~~f~----~I~~ifG~fLLytgi 224 (261)
+.++-.+=+-||++++..-.++ + ..+--....|+..|...=.++..+|.. +++.++ .++++|++||+|.|+
T Consensus 12 ~~~~~~sPGP~~~~vi~~~~~~-G---~~~~~~~~~G~~~g~~i~~~l~~~Gl~~ll~~~p~~~~~l~~~Ga~yLlylg~ 87 (206)
T PRK10229 12 HIVALMSPGPDFFFVSQTAVSR-S---RKEAMMGVLGITCGVMVWAGVALLGLHLILEKMAWLHTIIMVGGGLYLCWMGY 87 (206)
T ss_pred HHHHhcCCCchhHHHHHHHHhc-c---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4456666778999999887774 1 112223445565565666666566664 555544 478999999999999
Q ss_pred hhhhcc
Q 024890 225 KLFASE 230 (261)
Q Consensus 225 K~~~~~ 230 (261)
++++++
T Consensus 88 ~~~~~~ 93 (206)
T PRK10229 88 QMLRGA 93 (206)
T ss_pred HHHHhc
Confidence 999864
No 21
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=95.91 E-value=0.099 Score=45.97 Aligned_cols=76 Identities=25% Similarity=0.294 Sum_probs=49.7
Q ss_pred HHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHh----hhHHHHHHHHHHHHHHhh
Q 024890 151 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQR----FEAVNLVLAGILLFSSFK 225 (261)
Q Consensus 151 ylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~-~Ll~~----f~~I~~ifG~fLLytgiK 225 (261)
.++-.+=+=||+.|++.-.++ -..+--....|+..+.+.=.++..+|. .++.. |..++++|++||+|.|+|
T Consensus 14 ~~~~~~PGP~~~~v~~~~~~~----G~~~g~~~~~G~~~G~~v~~~l~~~Gl~all~~~~~~f~~lk~~GaaYL~ylg~~ 89 (208)
T COG1280 14 LVLAATPGPDNLLVLARSLSR----GRRAGLATALGIALGDLVHMLLAALGLAALLATSPALFTVLKLAGAAYLLYLGWK 89 (208)
T ss_pred HHHhcCCCccHHHHHHHHHHh----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 445555677999998887762 111222333444444555556666663 55554 455899999999999999
Q ss_pred hhhcc
Q 024890 226 LFASE 230 (261)
Q Consensus 226 ~~~~~ 230 (261)
+++.+
T Consensus 90 ~~ra~ 94 (208)
T COG1280 90 ALRAG 94 (208)
T ss_pred HHhcc
Confidence 99864
No 22
>PRK09304 arginine exporter protein; Provisional
Probab=95.90 E-value=0.15 Score=44.30 Aligned_cols=78 Identities=18% Similarity=0.144 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhH----HHHHHHHHHHH
Q 024890 147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTA-TLQRFEA----VNLVLAGILLF 221 (261)
Q Consensus 147 FltgylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~-Ll~~f~~----I~~ifG~fLLy 221 (261)
++.|+.+-..=+-||++++..-.+. .+.-....|+..+.++=.....+|.. +++.+++ ++++|++||+|
T Consensus 9 ~~~g~~~~~tPGP~~~~v~~~~~~~------~~~~~~~~Gi~~g~~~~~~la~~Gl~~Ll~~~p~~~~~l~~~Ga~YLly 82 (207)
T PRK09304 9 FALGAAMILPLGPQNAFVMNQGIRR------QYHLMIALLCALSDLVLICAGIFGGSALLMQSPWLLALVTWGGVAFLLW 82 (207)
T ss_pred HHHHHHHHhccChHHHHHHHHHHcc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556667777778999999876551 12334555666666666565556664 4666665 78999999999
Q ss_pred HHhhhhhcc
Q 024890 222 SSFKLFASE 230 (261)
Q Consensus 222 tgiK~~~~~ 230 (261)
.|+|+++++
T Consensus 83 Lg~~~~rs~ 91 (207)
T PRK09304 83 YGFGAFKTA 91 (207)
T ss_pred HHHHHHHHh
Confidence 999999864
No 23
>TIGR00948 2a75 L-lysine exporter.
Probab=95.71 E-value=0.11 Score=43.69 Aligned_cols=67 Identities=15% Similarity=0.071 Sum_probs=47.2
Q ss_pred hhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHh----hhHHHHHHHHHHHHHHhhhhhcc
Q 024890 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTA-TLQR----FEAVNLVLAGILLFSSFKLFASE 230 (261)
Q Consensus 158 SvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~-Ll~~----f~~I~~ifG~fLLytgiK~~~~~ 230 (261)
+-||++++..-.+. + +--....|+..+...=+++..+|.. +++. +..++++||+||+|.|+|+++++
T Consensus 6 GP~~~~vi~~~~~~-----~-~g~~~~~G~~~g~~i~~~~~~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~~~r~~ 77 (177)
T TIGR00948 6 GAQNAFVLRQGIRR-----E-HVLLIVALCCICDLVLIAAGVFGVAALLAASPILLAVLTWGGALFLLWYGFLAAKTA 77 (177)
T ss_pred cchHHHHHHHHHcc-----c-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888888887762 1 2233455666666666666666665 5554 34589999999999999999864
No 24
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=95.68 E-value=0.044 Score=52.08 Aligned_cols=70 Identities=23% Similarity=0.193 Sum_probs=57.2
Q ss_pred HHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhc
Q 024890 151 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFAS 229 (261)
Q Consensus 151 ylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAi-v~RiIfI~~G~~Ll~~f~~I~~ifG~fLLytgiK~~~~ 229 (261)
-+.+.+-|+||+..+..+.+. .-+.+.|-+.|+ .+|.+..+ -..++++|+++.+.++++|.++|+||+.+
T Consensus 199 e~~DlvFslDSIpAi~aiT~d--------~~iV~tsnifaIlgLR~lyf~-l~~ll~rf~~L~~~~a~iL~fIGvkmll~ 269 (302)
T TIGR03718 199 ETTDLIFAVDSIPAIFAITQD--------PFIVFTSNIFAILGLRSLYFL-LAGLLERFHYLKYGLAVILVFIGVKMLLH 269 (302)
T ss_pred HHHHHHHhhccHHHHHHhhcC--------CeEEehHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 467899999999998888763 335666666666 59988655 56778899999999999999999999885
No 25
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=95.48 E-value=0.27 Score=42.38 Aligned_cols=73 Identities=11% Similarity=0.147 Sum_probs=48.2
Q ss_pred HHHHHhhhhhHHHHHHHhccCCCChhhhhHHHH--HHHHHHHHHHHHHHHHHHH-HHHhhh----HHHHHHHHHHHHHHh
Q 024890 152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLS--YGIAGAIVFRLSLILLGTA-TLQRFE----AVNLVLAGILLFSSF 224 (261)
Q Consensus 152 lLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~--~GI~gAiv~RiIfI~~G~~-Ll~~f~----~I~~ifG~fLLytgi 224 (261)
++=.+=+-||+.++..-.++ -+++.+. .|+..+...=+++..+|.. +++.++ .++++|++||+|.|+
T Consensus 15 ~~~~sPGP~~~~v~~~~~~~------G~r~~~~~~~G~~~g~~v~~~~~~~Gl~~l~~~~p~~~~~lk~~Ga~YL~~lg~ 88 (205)
T PRK10520 15 ILSLSPGSGAINTMSTSISH------GYRGAVASIAGLQTGLAIHIVLVGVGLGALFSQSLLAFEVLKWAGAAYLIWLGI 88 (205)
T ss_pred HHhcCCchhHHHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34445566888888776552 2334433 3555555666666666654 445444 489999999999999
Q ss_pred hhhhcc
Q 024890 225 KLFASE 230 (261)
Q Consensus 225 K~~~~~ 230 (261)
|+++.+
T Consensus 89 ~~~~s~ 94 (205)
T PRK10520 89 QQWRAA 94 (205)
T ss_pred HHHhCC
Confidence 999864
No 26
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=94.79 E-value=0.25 Score=41.54 Aligned_cols=68 Identities=24% Similarity=0.202 Sum_probs=43.2
Q ss_pred hhhhhHHHHHHHhccCCCChhhhhHHHHH--HHHHHHHHHHHHHHHHHHHHHh-h----hHHHHHHHHHHHHHHhhhhhc
Q 024890 157 LSVDNLFVFVLIFKYFKVPVMYQNRVLSY--GIAGAIVFRLSLILLGTATLQR-F----EAVNLVLAGILLFSSFKLFAS 229 (261)
Q Consensus 157 LSvDNafVfa~If~~FkvP~~~Q~RvL~~--GI~gAiv~RiIfI~~G~~Ll~~-f----~~I~~ifG~fLLytgiK~~~~ 229 (261)
.+-+|+.++..-.++ -+++.+.. |...+...=+++..+|...+-+ . .++.++||+||+|.|++++++
T Consensus 7 PGP~~~~~i~~~~~~------G~~~~~~~~~G~~~~~~i~~~~~~~g~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~ 80 (191)
T PF01810_consen 7 PGPVNLLVISNGLRK------GFKAGLPVALGAALGDLIYILLAVFGLSALLKSSPWLFMILKLLGALYLLYLGYKLLRS 80 (191)
T ss_pred CCHHHHHHHHHHHHh------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356788888776652 23344433 3333334445555555555532 3 458999999999999999987
Q ss_pred c
Q 024890 230 E 230 (261)
Q Consensus 230 ~ 230 (261)
+
T Consensus 81 ~ 81 (191)
T PF01810_consen 81 K 81 (191)
T ss_pred c
Confidence 4
No 27
>PRK10958 leucine export protein LeuE; Provisional
Probab=94.70 E-value=0.38 Score=42.19 Aligned_cols=70 Identities=17% Similarity=0.145 Sum_probs=47.3
Q ss_pred HHhhhhhHHHHHHHhccCCCChhhhhHHHH--HHHHHHHHHHHHHHHHHHH-HHHhh----hHHHHHHHHHHHHHHhhhh
Q 024890 155 QSLSVDNLFVFVLIFKYFKVPVMYQNRVLS--YGIAGAIVFRLSLILLGTA-TLQRF----EAVNLVLAGILLFSSFKLF 227 (261)
Q Consensus 155 ~sLSvDNafVfa~If~~FkvP~~~Q~RvL~--~GI~gAiv~RiIfI~~G~~-Ll~~f----~~I~~ifG~fLLytgiK~~ 227 (261)
.+=+-||++++..-.++ -+++.+. .|+..+.+.=++...+|.. +++.+ ..++++||+||+|.|+|.+
T Consensus 22 ~sPGP~~~~v~~~~~~~------G~r~~~~~~~G~~~g~~~~~~~~~~G~~~l~~~~p~~~~~l~~~G~~yL~~la~~~~ 95 (212)
T PRK10958 22 LLPGPNSLYVLSTAARR------GVKAGYRAACGVFIGDAVLMFLAAAGVASLLKATPLLFNVVKYLGAAYLLYLGVKML 95 (212)
T ss_pred cCCchHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677999998887663 2344444 4555555555555555654 34344 4489999999999999999
Q ss_pred hcc
Q 024890 228 ASE 230 (261)
Q Consensus 228 ~~~ 230 (261)
+++
T Consensus 96 ~~~ 98 (212)
T PRK10958 96 RAA 98 (212)
T ss_pred Hhh
Confidence 864
No 28
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=94.69 E-value=0.18 Score=45.06 Aligned_cols=72 Identities=22% Similarity=0.272 Sum_probs=46.3
Q ss_pred hhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHhhhhhccC
Q 024890 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQR--FEAVNLVLAGILLFSSFKLFASEE 231 (261)
Q Consensus 158 SvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~--f~~I~~ifG~fLLytgiK~~~~~e 231 (261)
.+|.++|....|+. .+.+.|+|-..+|=..+...=++.-+++...+.. =+|+.-+.|+.=++.|+|.+.++|
T Consensus 5 niDd~~iL~~~F~~--~~~~~~~~~I~~GqylG~~~Lv~~Sl~~~~~l~~ip~~wiLGlLGliPI~lGi~~l~~~~ 78 (191)
T PF03596_consen 5 NIDDIVILLLFFAQ--VKTRFRRRQIVIGQYLGFTILVLASLLGAFGLLFIPPEWILGLLGLIPIYLGIKALFSGE 78 (191)
T ss_pred cHHHHHHHHHHHhc--ccCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 68999999999995 5555567777777333332222222222222222 268888899999999999776543
No 29
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=94.56 E-value=0.35 Score=40.59 Aligned_cols=65 Identities=15% Similarity=0.184 Sum_probs=43.2
Q ss_pred hhhHHHHHHHhccCCCChhhhhHHH--HHHHHHHHHHHHHHHHHHH-HHHHhhh----HHHHHHHHHHHHHHhhhhhc
Q 024890 159 VDNLFVFVLIFKYFKVPVMYQNRVL--SYGIAGAIVFRLSLILLGT-ATLQRFE----AVNLVLAGILLFSSFKLFAS 229 (261)
Q Consensus 159 vDNafVfa~If~~FkvP~~~Q~RvL--~~GI~gAiv~RiIfI~~G~-~Ll~~f~----~I~~ifG~fLLytgiK~~~~ 229 (261)
-||++++..-.++ -+++++ ..|+..+.+.=+++..+|. .+++.++ .+.++||+||+|.|++++++
T Consensus 4 P~~~~~~~~~~~~------G~~~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~~ 75 (185)
T TIGR00949 4 PNFFVVMQTSLSS------GRRAGVLTILGIALGDAIWIVLSLLGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLRK 75 (185)
T ss_pred cchHHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4777777766552 133444 4455666666555555555 3554444 47999999999999999985
No 30
>COG1971 Predicted membrane protein [Function unknown]
Probab=94.30 E-value=0.41 Score=43.09 Aligned_cols=81 Identities=16% Similarity=0.135 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHH
Q 024890 146 EFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF-----EAVNLVLAGILL 220 (261)
Q Consensus 146 eFltgylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f-----~~I~~ifG~fLL 220 (261)
++++..++-..+|.||..|=.. -.--+.+.+ -+..|..|+...+ +-+++.++|..+=+-+ .|-.+++++.|+
T Consensus 2 ~~~sllllA~alsmDAFav~l~-~G~~~~k~~-~~~~L~ia~~fG~-f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~ 78 (190)
T COG1971 2 NIISLLLLAIALSMDAFAVSLG-KGLAKHKIR-FKEALVIALIFGV-FQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLI 78 (190)
T ss_pred cHHHHHHHHHHHhhHHHHHHHH-hhhhhcccc-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888999999999755322 111122222 2445555555443 4556666665544322 366789999999
Q ss_pred HHHhhhhhc
Q 024890 221 FSSFKLFAS 229 (261)
Q Consensus 221 ytgiK~~~~ 229 (261)
+.|.+|+.+
T Consensus 79 ~lG~~mI~e 87 (190)
T COG1971 79 ILGLKMIIE 87 (190)
T ss_pred HHHHHHHHH
Confidence 999999876
No 31
>COG1279 Lysine efflux permease [General function prediction only]
Probab=93.19 E-value=1 Score=40.92 Aligned_cols=75 Identities=23% Similarity=0.270 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhH----HHHHHHHH
Q 024890 147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT----ATLQRFEA----VNLVLAGI 218 (261)
Q Consensus 147 FltgylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~----~Ll~~f~~----I~~ifG~f 218 (261)
|+-|.-+=..+++.|+||+-.-.+ |+++|..-+. +.+.=+++|.+|+ .++++-+| +.+.|.+|
T Consensus 9 fll~~~LI~pIGaQNaFVl~QGi~--------r~~~l~~~~~-c~i~D~~Li~~gv~G~~~li~~~p~l~~i~~~~G~~F 79 (202)
T COG1279 9 FLLGASLILPIGAQNAFVLNQGIR--------REYVLPIALL-CAISDIVLISAGVFGVGALIAKSPWLLLIVRWGGAAF 79 (202)
T ss_pred HHHHHHHHHhccchhHHHHHHHHh--------hccHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 444445567789999999876554 4566655443 4455555555433 44445555 67788899
Q ss_pred HHHHHhhhhhcc
Q 024890 219 LLFSSFKLFASE 230 (261)
Q Consensus 219 LLytgiK~~~~~ 230 (261)
|+|.|++-+++.
T Consensus 80 Ll~yg~~a~~~a 91 (202)
T COG1279 80 LLYYGLLALKSA 91 (202)
T ss_pred HHHHHHHHHHhh
Confidence 999999998763
No 32
>PRK11469 hypothetical protein; Provisional
Probab=92.29 E-value=1.7 Score=38.39 Aligned_cols=81 Identities=14% Similarity=0.059 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHhh-hHHHHHHHHHHH
Q 024890 146 EFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILL----GTATLQRF-EAVNLVLAGILL 220 (261)
Q Consensus 146 eFltgylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~----G~~Ll~~f-~~I~~ifG~fLL 220 (261)
++++..++=.+||.||..|=...=. +.++...++.+...+..+. +-.+++++ |..+-+-. ++-..+++..|+
T Consensus 2 ~~~~i~llaialsmDaF~v~ia~G~--~~~~~~~~~~~~~~l~~g~-~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~ 78 (188)
T PRK11469 2 NITATVLLAFGMSMDAFAASIGKGA--TLHKPKFSEALRTGLIFGA-VETLTPLIGWGMGMLASRFVLEWNHWIAFVLLI 78 (188)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhh--cccCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899999999765443221 2333333444444443333 23444443 44333311 234677888899
Q ss_pred HHHhhhhhc
Q 024890 221 FSSFKLFAS 229 (261)
Q Consensus 221 ytgiK~~~~ 229 (261)
+.|.+|+.+
T Consensus 79 ~lG~~mi~e 87 (188)
T PRK11469 79 FLGGRMIIE 87 (188)
T ss_pred HHHHHHHHH
Confidence 999999875
No 33
>PRK11469 hypothetical protein; Provisional
Probab=91.99 E-value=2.4 Score=37.39 Aligned_cols=98 Identities=18% Similarity=0.195 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhHHHhhc----Ch-h------hHHHHHHHHHHHHHhhhhhHHH-HHHHhccCCCChhhhhHHHHHHHHHH
Q 024890 123 FCVSTAVAFGLGVGFIE----GA-S------KASEFFAGYILEQSLSVDNLFV-FVLIFKYFKVPVMYQNRVLSYGIAGA 190 (261)
Q Consensus 123 ~wV~LAllFg~~i~~~~----G~-~------~a~eFltgylLE~sLSvDNafV-fa~If~~FkvP~~~Q~RvL~~GI~gA 190 (261)
=|++..+++.+++|... +. + .-..+....++=.++|+||+.| +..-+. ++|. -.-++..|+...
T Consensus 70 ~~i~~~lL~~lG~~mi~e~~~~~~~~~~~~~~~~~~~~~l~LaiAtSiDAlavGi~~~~~--g~~~--~~~~~~ig~~s~ 145 (188)
T PRK11469 70 HWIAFVLLIFLGGRMIIEGFRGADDEDEEPRRRHGFWLLVTTAIATSLDAMAVGVGLAFL--QVNI--IATALAIGCATL 145 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHh--hhhH--HHHHHHHHHHHH
Confidence 48888888877777532 11 1 1123456677888999999988 555554 3432 223444554443
Q ss_pred HHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHhhhhhc
Q 024890 191 IVFRLSLILLGTATLQRF-----EAVNLVLAGILLFSSFKLFAS 229 (261)
Q Consensus 191 iv~RiIfI~~G~~Ll~~f-----~~I~~ifG~fLLytgiK~~~~ 229 (261)
++..+|.++=.++ .|..+++|+.|+..|+|++.+
T Consensus 146 -----~~~~~G~~lG~~~g~~~g~~a~~lgG~iLI~iGi~il~~ 184 (188)
T PRK11469 146 -----IMSTLGMMVGRFIGSIIGKKAEILGGLVLIGIGVQILWT 184 (188)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444333211 367889999999999999864
No 34
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=91.51 E-value=1.9 Score=38.28 Aligned_cols=76 Identities=16% Similarity=0.149 Sum_probs=44.4
Q ss_pred HHHHHHHhhhhhHHH-HHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h-HHHHHHHHHHHHHHhhh
Q 024890 150 GYILEQSLSVDNLFV-FVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF-E-AVNLVLAGILLFSSFKL 226 (261)
Q Consensus 150 gylLE~sLSvDNafV-fa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f-~-~I~~ifG~fLLytgiK~ 226 (261)
..++=.+||.|+..| ++.-.+. ++. .-+.++.+|++-+ +|=.+-.++|..+-+.+ . +-.+++|+.|++.|.+|
T Consensus 3 i~llaials~Daf~vgi~~G~~~--~~~-~~~~~l~ig~~~~-~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~m 78 (206)
T TIGR02840 3 LLLLAFAVSLDSFGVGIAYGLRK--IKI-PFLSNLIIAVISG-LFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWI 78 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc--CCh-hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH
Confidence 356778999999877 3333332 222 1234455555444 22222233344444323 2 46789999999999999
Q ss_pred hhc
Q 024890 227 FAS 229 (261)
Q Consensus 227 ~~~ 229 (261)
+.+
T Consensus 79 i~~ 81 (206)
T TIGR02840 79 IYN 81 (206)
T ss_pred HHH
Confidence 875
No 35
>COG1971 Predicted membrane protein [Function unknown]
Probab=90.74 E-value=4.9 Score=36.34 Aligned_cols=100 Identities=20% Similarity=0.168 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhHHHhhc----Chhh--------H-HHHHHHHHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHH
Q 024890 122 AFCVSTAVAFGLGVGFIE----GASK--------A-SEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIA 188 (261)
Q Consensus 122 ~~wV~LAllFg~~i~~~~----G~~~--------a-~eFltgylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~ 188 (261)
.=|++-+++..++++... +.+. . ..|.+..++-.+.|.||+.|=+-..- ++-.-+.-+...|++
T Consensus 69 ~~wigf~lL~~lG~~mI~e~f~~~~~~~~~~~~~~~~~~~~~~~laiatSidal~vG~~~a~---lgv~i~~~av~iG~~ 145 (190)
T COG1971 69 AHWIGFVLLIILGLKMIIEGFKNEEDEFVDPAEKHDLNFKELILLAIATSIDALAVGVGLAF---LGVNILLAAVAIGLI 145 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchhhcchhcccccchhhHHHHHHHHHHHHHHHHHHhhhHHH---hcchHHHHHHHHHHH
Confidence 457777777777776532 1111 1 12777889999999999977654433 454556666666654
Q ss_pred HHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHhhhhhc
Q 024890 189 GAIVFRLSLILLGTATLQRF-----EAVNLVLAGILLFSSFKLFAS 229 (261)
Q Consensus 189 gAiv~RiIfI~~G~~Ll~~f-----~~I~~ifG~fLLytgiK~~~~ 229 (261)
- +++..+|..+=+++ .+..++||+.|+..|.|.+.+
T Consensus 146 T-----~il~~~G~~IG~~~g~~~g~~ae~lgGiiLI~~G~~iL~~ 186 (190)
T COG1971 146 T-----LILSALGAIIGRKLGKFLGKYAEILGGIILIGIGVKILLE 186 (190)
T ss_pred H-----HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 2 23344444433322 367899999999999998875
No 36
>COG2119 Predicted membrane protein [Function unknown]
Probab=89.90 E-value=1.4 Score=39.92 Aligned_cols=67 Identities=15% Similarity=0.211 Sum_probs=56.1
Q ss_pred hhhHHHHHHHhccCCCChhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHhhhhhcc
Q 024890 159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFE--AVNLVLAGILLFSSFKLFASE 230 (261)
Q Consensus 159 vDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAi-v~RiIfI~~G~~Ll~~f~--~I~~ifG~fLLytgiK~~~~~ 230 (261)
+|--+.++++... ++|++..+.|+.+|. .|-++-..+|-+..+-++ +..++.|..-+..|+|++.++
T Consensus 17 GDKT~lia~llA~-----r~~~~~v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~l~ed 86 (190)
T COG2119 17 GDKTQLIAMLLAM-----RYRRWPVFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWMLIED 86 (190)
T ss_pred ccHHHHHHHHHHH-----hcCCchhHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhccc
Confidence 6888899988764 677889999999999 488888888999887556 788888888888899998875
No 37
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=88.86 E-value=12 Score=32.15 Aligned_cols=71 Identities=20% Similarity=0.105 Sum_probs=45.0
Q ss_pred HHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHh
Q 024890 152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA--VNLVLAGILLFSSF 224 (261)
Q Consensus 152 lLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f~~--I~~ifG~fLLytgi 224 (261)
+.-..-+.-+....+++.+. .|+++|.++.-+-..+.-+-.++...++..+.+.+.| ..++.++..+..++
T Consensus 94 l~g~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~i 166 (352)
T PF07690_consen 94 LLGIGSGFFSPASNALIADW--FPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAI 166 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--CCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccc--chhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhh
Confidence 33333456666777777775 6777777777555555556677777788888766555 55555555555444
No 38
>TIGR00779 cad cadmium resistance transporter (or sequestration) family protein. These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, PubMed:10943564).
Probab=88.23 E-value=0.74 Score=41.42 Aligned_cols=73 Identities=18% Similarity=0.195 Sum_probs=46.5
Q ss_pred hhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhccCCCC
Q 024890 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRL---SLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDT 234 (261)
Q Consensus 158 SvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~Ri---IfI~~G~~Ll~~f~~I~~ifG~fLLytgiK~~~~~eee~ 234 (261)
.+|.++|....|+. +. +.|+|-..+|=......=+ ++.+.|..++- =.|+.-+.|+.=++.|+|.+.++|||+
T Consensus 5 niDdi~vL~~fF~~--~~-~~~~~~IviGqylGf~~Lv~~Sl~~a~gl~~iP-~~wIlGlLGliPI~lGi~~l~~~~~~~ 80 (193)
T TIGR00779 5 GVDLLVILLIFFAR--AK-RKEYKDIYIGQYLGSIILILVSLLLAFGVNLIP-EKWVLGLLGLIPIYLGIKVAIKGECDE 80 (193)
T ss_pred cHHHHHHHHHHHHH--cc-CCCeeEEEEeHHHHHHHHHHHHHHHHHHHHhCC-HHHHHhHHhHHHHHHHHHHHhcccccc
Confidence 57999999999985 55 6666666555443332211 22233333332 258888899999999999877655443
No 39
>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]
Probab=87.82 E-value=3.1 Score=37.92 Aligned_cols=87 Identities=17% Similarity=0.138 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 024890 147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIV---FRLSLILLGTATLQRFEAVNLVLAGILLFSS 223 (261)
Q Consensus 147 FltgylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv---~RiIfI~~G~~Ll~~f~~I~~ifG~fLLytg 223 (261)
+.+..++=.+=++|-+++.++.|..++. +.|+.=++.|=...-+ +-.++..++...+. =.|+.-.+|++=+|.|
T Consensus 5 ~v~sivly~aTaiD~lIiL~l~Far~~~--~k~~~~I~~GQyLGs~~lilaSL~~a~v~~fvp-~e~I~glLGLIPi~LG 81 (205)
T COG4300 5 VVSSIVLYIATAIDLLIILLLFFARRKS--RKDILHIYLGQYLGSVILILASLLFAFVLNFVP-EEWILGLLGLIPIYLG 81 (205)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcc--cCcEEEEeHHHHHhHHHHHHHHHHHHHHHhhCc-HHHHHHHHhHHHHHHh
Confidence 4555666677889999999999996554 3344444444332222 11122222222222 3688888999999999
Q ss_pred hhhhhccCCCCCC
Q 024890 224 FKLFASEEDDTDL 236 (261)
Q Consensus 224 iK~~~~~eee~d~ 236 (261)
+|.+..+|+|+|.
T Consensus 82 ik~l~~~d~d~e~ 94 (205)
T COG4300 82 IKVLILGDDDGEE 94 (205)
T ss_pred hHHhhcccCcCch
Confidence 9987665444333
No 40
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=87.78 E-value=17 Score=31.34 Aligned_cols=57 Identities=14% Similarity=0.009 Sum_probs=33.9
Q ss_pred HHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024890 152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 210 (261)
Q Consensus 152 lLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f~~ 210 (261)
+.-..-+.-+....+++.+. .|+++|.++.-+--.+.-+--++-..++..+++.+.|
T Consensus 101 l~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~ 157 (365)
T TIGR00900 101 ILAIAQAFFTPAYQAMLPDL--VPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGI 157 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 33344455566666677664 6877666665444444445556666777777765544
No 41
>TIGR00901 2A0125 AmpG-related permease.
Probab=84.24 E-value=30 Score=30.78 Aligned_cols=59 Identities=7% Similarity=-0.156 Sum_probs=37.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024890 149 AGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFE 209 (261)
Q Consensus 149 tgylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f~ 209 (261)
.+.++...-+..+..+-+++.+. .|+++|.++.-+-..+.-+.-++...++..+.+.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~a~~~~~--~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g 147 (356)
T TIGR00901 89 LAFLIAFFSATQDIALDAWRLEI--LSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEF 147 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--CCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 33455566666777778888775 588878777765555555555555666666666554
No 42
>PRK14013 hypothetical protein; Provisional
Probab=81.36 E-value=14 Score=36.20 Aligned_cols=77 Identities=19% Similarity=0.212 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHH-HHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHH
Q 024890 145 SEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGI-AGAIVFRLSLI-LLGTATLQRFEAVNLVLAGILLFS 222 (261)
Q Consensus 145 ~eFltgylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI-~gAiv~RiIfI-~~G~~Ll~~f~~I~~ifG~fLLyt 222 (261)
..|+..=+++.+-|+|++...-.+.+ +.-+...|. +|++.+|.+-+ ++-...+++|.++.+-....+.+.
T Consensus 223 ~~fl~lE~~D~~FS~DsV~aafAiT~--------d~~II~~g~~igil~lRslt~yfv~~g~L~~f~yLe~ga~~~I~~l 294 (338)
T PRK14013 223 GGFLYLEVLDASFSFDGVIGAFAITN--------DIFIIALGLGIGAMFVRSLTIYLVEKGTLDEYVYLEHGAHYAIGAL 294 (338)
T ss_pred HHHHHHHHHHHHHHhccchhheeecC--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccHHHHHHHH
Confidence 34777778999999999876554443 345566665 55567999844 345557888999999999999999
Q ss_pred Hhhhhhc
Q 024890 223 SFKLFAS 229 (261)
Q Consensus 223 giK~~~~ 229 (261)
|+||+.+
T Consensus 295 gvkmll~ 301 (338)
T PRK14013 295 AVIMLLS 301 (338)
T ss_pred HHHHHHh
Confidence 9999885
No 43
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase.
Probab=80.80 E-value=22 Score=38.81 Aligned_cols=126 Identities=12% Similarity=0.070 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhHHHhhcChhhHHHHHHHHHHHHHhhhhhHHHHHHHhccCCCChh-h-hhHH-----------------
Q 024890 122 AFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVM-Y-QNRV----------------- 182 (261)
Q Consensus 122 ~~wV~LAllFg~~i~~~~G~~~a~eFltgylLE~sLSvDNafVfa~If~~FkvP~~-~-Q~Rv----------------- 182 (261)
++-+.++++++.+++.+.|.....---..-++=+..++||+|+++-- ..-.-|.. - ++-+
T Consensus 97 V~~V~~Svv~S~Gl~s~lG~~~t~I~eViPFLvLaIGVDnifiLa~~-~~~t~~~~~v~eRIa~~l~~vGpSItltslte 175 (886)
T TIGR00920 97 LFTIFSSFVFSTAVIHFLGSELTGLNEALPFFLLLIDLSKASALAKF-ALSSNSQDEVRDNIARGMAILGPTITLDTVVE 175 (886)
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHhHHHhhhchhhHHHHHhh-hhccCCCCCHHHHHHHHHHHhccceeHHHHHH
Confidence 56677888888888888887665432223344457799999999644 20001111 1 2222
Q ss_pred -HHHHHHHHH----HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhc---------------cCCCCCCCccHHH
Q 024890 183 -LSYGIAGAI----VFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFAS---------------EEDDTDLSDNFIV 242 (261)
Q Consensus 183 -L~~GI~gAi----v~RiIfI~~G~~Ll~~f~~I~~ifG~fLLytgiK~~~~---------------~eee~d~~~n~iv 242 (261)
+.+|+ |++ ..|....+.+.+++-.|-+-+.+|++.|-+.+-..-.. -++|+|.+.|+++
T Consensus 176 ~l~F~v-Gtls~mPAV~~Fc~ya~vAVl~nyllQmTfF~A~LsL~~~le~~~~h~~~~w~~~~~~~~~~~ee~~kpnpv~ 254 (886)
T TIGR00920 176 TLVIGV-GTMSGVRRLEVLCCFGCMSVLANYFVFMTFFPACLSLVLELSRSGREGRPVWHLSKFALVLEEEEDQKPNPVV 254 (886)
T ss_pred HHHHHH-hccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhhhhhhhhhhccCCCcHH
Confidence 22332 222 24555566666666556667777888887766542110 1345556778887
Q ss_pred HHhhhcc
Q 024890 243 KTCQRFI 249 (261)
Q Consensus 243 r~irk~l 249 (261)
.-+|=++
T Consensus 255 qrvk~im 261 (886)
T TIGR00920 255 QRVKMIM 261 (886)
T ss_pred HHhHHhh
Confidence 7665443
No 44
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=78.77 E-value=52 Score=31.46 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=25.4
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHhHHHhhcCh
Q 024890 109 EGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGA 141 (261)
Q Consensus 109 ~~~~s~keAl~wS~~wV~LAllFg~~i~~~~G~ 141 (261)
+.+++.|+++...++...++++.|.++.+..|.
T Consensus 89 ~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~ 121 (331)
T PRK12392 89 SGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGG 121 (331)
T ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 346788999999999888888888776655443
No 45
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog. In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane
Probab=77.73 E-value=18 Score=37.77 Aligned_cols=78 Identities=21% Similarity=0.308 Sum_probs=46.4
Q ss_pred HHHHHhhhhhHHHHHHHhccCCCChhhhhHH-------------------HHHHHHH--HH-HHHHHHHHHHHHHHHhhh
Q 024890 152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRV-------------------LSYGIAG--AI-VFRLSLILLGTATLQRFE 209 (261)
Q Consensus 152 lLE~sLSvDNafVfa~If~~FkvP~~~Q~Rv-------------------L~~GI~g--Ai-v~RiIfI~~G~~Ll~~f~ 209 (261)
.|=...++||+|++.-..+.-+....-++|. +-+|+.. .+ .+|...+..+++++=.|-
T Consensus 286 FLvlgIGvDd~Fi~~~~~~~~~~~~~~~er~~~~l~~~g~SitiTslT~~~aF~ig~~t~~pav~~Fc~~~a~av~f~~i 365 (798)
T PF02460_consen 286 FLVLGIGVDDMFIMIHAWRRTSPDLSVEERMAETLAEAGPSITITSLTNALAFAIGAITPIPAVRSFCIYAALAVLFDFI 365 (798)
T ss_pred HHHHHHHHhceEEeHHHHhhhchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHH
Confidence 3445689999999998887422222122221 1112111 11 356666666666664566
Q ss_pred HHHHHHHHHHHHHHhhhhhc
Q 024890 210 AVNLVLAGILLFSSFKLFAS 229 (261)
Q Consensus 210 ~I~~ifG~fLLytgiK~~~~ 229 (261)
+...+|+++|.+-+-+....
T Consensus 366 ~~it~f~a~l~l~~~re~~~ 385 (798)
T PF02460_consen 366 YQITFFPAILVLDGRREAAG 385 (798)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 67888899999888776544
No 46
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=74.58 E-value=62 Score=28.80 Aligned_cols=71 Identities=10% Similarity=0.080 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhhhhHHH-HHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHH
Q 024890 147 FFAGYILEQSLSVDNLFV-FVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF-------EAVNLVLAGI 218 (261)
Q Consensus 147 FltgylLE~sLSvDNafV-fa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f-------~~I~~ifG~f 218 (261)
+....++=.++|+||+.| ++.-+. +++.- .-++..|+ +=+++..+|.++=.++ .+. +++|+.
T Consensus 128 ~~e~l~L~iAlSiDalavG~s~~~~--g~~~~--~~~~~igi-----vs~i~~~~G~~lG~~~~~~~~~g~~a-~igGli 197 (206)
T TIGR02840 128 GKEALLLGIALSLDAFGAGIGASLL--GLNPL--ATSILVAV-----MSFIFVSLGLFLGKKISKKSIIGKFS-FLSGIL 197 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--CccHH--HHHHHHHH-----HHHHHHHHHHHHHHHHhhhhhccchH-HHHHHH
Confidence 455678889999999988 555554 34321 12333333 3345555555553321 344 899999
Q ss_pred HHHHHhhhh
Q 024890 219 LLFSSFKLF 227 (261)
Q Consensus 219 LLytgiK~~ 227 (261)
|+..|+|.+
T Consensus 198 LI~iG~~~~ 206 (206)
T TIGR02840 198 LILLGVWRL 206 (206)
T ss_pred HHHHHHhhC
Confidence 999999853
No 47
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=72.13 E-value=63 Score=30.66 Aligned_cols=51 Identities=12% Similarity=0.080 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHHhHHHhhcChhhHHHHHHHHHHHHHhhhhhHHHHHHH
Q 024890 118 VKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLI 168 (261)
Q Consensus 118 l~wS~~wV~LAllFg~~i~~~~G~~~a~eFltgylLE~sLSvDNafVfa~I 168 (261)
+..+..|..+++.|.+++..-.|++.+-..+++|++-.--+.-.++++++.
T Consensus 8 ~~~~~~~~l~~~~f~yG~~HAlgPGHGKavi~sYlv~~~~~~~~a~~lgl~ 58 (279)
T PRK10019 8 LQQGNAWFFIPSAILLGALHGLEPGHSKTMMAAFIIAIKGTIKQAVMLGLA 58 (279)
T ss_pred HHcchHHHHHHHHHHHHHHHhcCCCcchHHHhhhhhcCcccHHHHHHHHHH
Confidence 344478888888898888888898888777777776433333344444443
No 48
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=70.25 E-value=92 Score=28.87 Aligned_cols=53 Identities=15% Similarity=-0.002 Sum_probs=30.9
Q ss_pred HhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024890 156 SLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 210 (261)
Q Consensus 156 sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f~~ 210 (261)
..+.......+++.+. .|+++|.++.-+-..+--+-..+...+|..+.+.+.|
T Consensus 121 ~~g~~~~~~~~~i~~~--~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw 173 (394)
T PRK10213 121 ALGGFWAMSASLTMRL--VPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGW 173 (394)
T ss_pred hhHHHHHHHHHHHHHH--cCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCH
Confidence 3344444555555554 5777666655443333345677777788888776555
No 49
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=66.44 E-value=98 Score=30.88 Aligned_cols=95 Identities=16% Similarity=0.112 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHhHHHhhcChhhHHHHHHHHHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 024890 120 TVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLIL 199 (261)
Q Consensus 120 wS~~wV~LAllFg~~i~~~~G~~~a~eFltgylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~ 199 (261)
.+++=.++++..+..+|+..|...+....+. +.|+..+|....-|...-+.+ +.|.+.+.++=++..+
T Consensus 341 ~~alra~la~~~~~l~Wi~t~W~~G~~~~~~-----------~~v~~~lfa~~~~P~~~~~~~-~~G~l~~~~~a~~~~~ 408 (650)
T PF04632_consen 341 RNALRAFLAILIAGLFWIATGWPSGATAVMM-----------AAVVSSLFATLDNPAPALRLF-LIGALLGAVLAFLYLF 408 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChhHHHHHH-----------HHHHHHHHcCCcChHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3455566677777777777776554433332 235666677656666544444 4444444444444444
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 024890 200 LGTATLQRFEAVNLVLAGILLFSSFKL 226 (261)
Q Consensus 200 ~G~~Ll~~f~~I~~ifG~fLLytgiK~ 226 (261)
+..--++.|+.+.++.+.+++..++.+
T Consensus 409 ~vlP~~~~f~~L~l~l~~~l~~~~~~~ 435 (650)
T PF04632_consen 409 FVLPHLDGFPLLALVLAPFLFLGGLLM 435 (650)
T ss_pred HhhhccCcHHHHHHHHHHHHHHHHHHH
Confidence 433334445555555555555555433
No 50
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=66.22 E-value=1e+02 Score=27.87 Aligned_cols=57 Identities=14% Similarity=0.134 Sum_probs=27.1
Q ss_pred hhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHH
Q 024890 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA--VNLVLA 216 (261)
Q Consensus 158 SvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f~~--I~~ifG 216 (261)
+.......+++.+. .|+++|.++.-+--.+..+.-++...++..+.+.+.| ..++.+
T Consensus 106 ~~~~~~~~~~i~~~--~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~ 164 (392)
T PRK10473 106 GCCYVVAFAILRDT--LDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMA 164 (392)
T ss_pred hHHHHHHHHHHHHH--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHH
Confidence 33344444555553 5776666654333222223344445555555554444 344443
No 51
>PF11298 DUF3099: Protein of unknown function (DUF3099); InterPro: IPR021449 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=62.82 E-value=39 Score=26.19 Aligned_cols=50 Identities=16% Similarity=0.105 Sum_probs=34.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHhhhh
Q 024890 176 VMYQNRVLSYGIAGAIVFRLSLILLGTATLQ--RFEAVNLVLAGILLFSSFKLF 227 (261)
Q Consensus 176 ~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~--~f~~I~~ifG~fLLytgiK~~ 227 (261)
+++++|...|.+ .+.+|+.+++++..+.. -..|++.+++++|=|+++-+.
T Consensus 11 ~d~~~R~r~Y~i--~M~~Ri~~fvlA~~~~~~~~la~~~~~~av~LPwvAVviA 62 (73)
T PF11298_consen 11 QDQRRRRRRYLI--MMGIRIPCFVLAAVVYRLGWLAWAIIVGAVPLPWVAVVIA 62 (73)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchhheeec
Confidence 445556666655 46789988887777663 234578888899999998544
No 52
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=61.22 E-value=42 Score=32.38 Aligned_cols=66 Identities=17% Similarity=0.268 Sum_probs=39.6
Q ss_pred hhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHhhhhhc
Q 024890 159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIV-FRLSLILLGTATLQRFE--AVNLVLAGILLFSSFKLFAS 229 (261)
Q Consensus 159 vDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv-~RiIfI~~G~~Ll~~f~--~I~~ifG~fLLytgiK~~~~ 229 (261)
+|--|.++.++.. +|-+...+-|-.+|+. |-++-..+|-+.-+-++ |.-|+.|+..+.-|+||+++
T Consensus 82 GDKTFfiAAlmAm-----r~~R~~Vf~Ga~~AL~lMTiLS~~lG~aap~lipr~~T~~~~t~LF~iFGlkmL~e 150 (294)
T KOG2881|consen 82 GDKTFFIAALMAM-----RYPRLTVFSGAMSALALMTILSVLLGWAAPNLIPRKYTYYLATALFLIFGLKMLKE 150 (294)
T ss_pred cchHHHHHHHHHh-----hccchhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888877663 4455677889999984 55555555544323222 44455555555556666544
No 53
>PRK10489 enterobactin exporter EntS; Provisional
Probab=59.63 E-value=1.4e+02 Score=27.34 Aligned_cols=35 Identities=14% Similarity=-0.116 Sum_probs=19.2
Q ss_pred CCChhhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHhhh
Q 024890 173 KVPVMYQNRVLSYGIAGAI--VFRLSLILLGTATLQRFE 209 (261)
Q Consensus 173 kvP~~~Q~RvL~~GI~gAi--v~RiIfI~~G~~Ll~~f~ 209 (261)
..|++.|-+ ..|+..+. +...+-..++..+.+.+.
T Consensus 340 ~~p~~~~g~--~~g~~~~~~~~g~~~g~~l~G~l~~~~g 376 (417)
T PRK10489 340 QTPDEMLGR--INGLWTAQNVTGDAIGAALLGGLGAMMT 376 (417)
T ss_pred hCCHHHHHH--HHHHHHHHHhhhHhHHHHHHHHHHHHhc
Confidence 367765555 45555443 345555666666666443
No 54
>TIGR01937 nqrB NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit. This model represents the NqrB subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=59.33 E-value=81 Score=31.74 Aligned_cols=56 Identities=20% Similarity=0.203 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhhh-------hhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHH-HHHHHHH
Q 024890 144 ASEFFAGYILEQSLSV-------DNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVF-RLSLILL 200 (261)
Q Consensus 144 a~eFltgylLE~sLSv-------DNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~-RiIfI~~ 200 (261)
.+...++.+.|.+..- |.++|-++++.. .+|+.----+...|...|+++ +-+|=..
T Consensus 126 ~vs~~~a~~~E~l~~~~r~~~~~dsa~VTglLlal-~LPp~~P~W~~~iG~~fAIvigK~vFGGl 189 (413)
T TIGR01937 126 LVSYAVGGTWEVLFAVVRKHEINEGFLVTGILFPL-IVPPTIPLWMAALGIAFGVVVAKEVFGGT 189 (413)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH-HCCCCchHHHHHHHHHHHHHHHHHhcCCC
Confidence 4445566666643211 666666666653 577766666666666666654 4444333
No 55
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=58.46 E-value=1.5e+02 Score=27.07 Aligned_cols=30 Identities=17% Similarity=0.090 Sum_probs=23.7
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHhHHHhh
Q 024890 109 EGRESYTSSVKTVAFCVSTAVAFGLGVGFI 138 (261)
Q Consensus 109 ~~~~s~keAl~wS~~wV~LAllFg~~i~~~ 138 (261)
+.+++.|++...+..+.+++++.|+++.+.
T Consensus 81 ~G~is~~~~~~~~~~~~~~~~~~g~~l~~~ 110 (293)
T PRK06080 81 RGGISPKQVKRAAIAFFGLAALLGLYLVAV 110 (293)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788999999988888888888776544
No 56
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=57.10 E-value=1.5e+02 Score=26.75 Aligned_cols=27 Identities=11% Similarity=0.050 Sum_probs=20.1
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHhHH
Q 024890 109 EGRESYTSSVKTVAFCVSTAVAFGLGV 135 (261)
Q Consensus 109 ~~~~s~keAl~wS~~wV~LAllFg~~i 135 (261)
+++++.+++...+.+...++++.+..+
T Consensus 76 ~G~is~~~a~~~~~~~~~~~~~~~~~l 102 (279)
T PRK12884 76 SGRISRREALLLAILLFILGLIAAYLI 102 (279)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788999988888877777665543
No 57
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=56.47 E-value=2.6e+02 Score=29.39 Aligned_cols=50 Identities=16% Similarity=-0.059 Sum_probs=29.7
Q ss_pred HhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024890 156 SLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQR 207 (261)
Q Consensus 156 sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~ 207 (261)
..++.+....+++... .|++.|.++.-+--.+..+.-++-.++|..+++.
T Consensus 116 ~~~~~~~~~~~~i~~~--~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 116 QSAIYSPAKYGIIPEL--VGKENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred HHHhhchHHHhhhHHh--cCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555556666664 5777666665554444445556666667777654
No 58
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=56.24 E-value=1.6e+02 Score=33.13 Aligned_cols=73 Identities=21% Similarity=0.250 Sum_probs=41.2
Q ss_pred HHHHhhhhhHHHHHHHhccCC--CChhhhhHHHHHHHH-----------------HHH----HHHHHHHHHHHHHHHhhh
Q 024890 153 LEQSLSVDNLFVFVLIFKYFK--VPVMYQNRVLSYGIA-----------------GAI----VFRLSLILLGTATLQRFE 209 (261)
Q Consensus 153 LE~sLSvDNafVfa~If~~Fk--vP~~~Q~RvL~~GI~-----------------gAi----v~RiIfI~~G~~Ll~~f~ 209 (261)
|=..+++||.|++....+.-. .|.++| .....+=. ||+ .+|...+..+++++-.|-
T Consensus 466 LvLgIGVDn~Fllv~~~~~t~~~~~v~~r-~~~~l~~~g~SI~~tslt~~~aF~~ga~t~~Pavr~F~~~~a~av~~~~l 544 (1145)
T TIGR00918 466 LALGVGVDDVFLLAHAFSETGQNIPFEER-TGECLKRTGASVVLTSISNVTAFFMAALIPIPALRAFSLQAAIVVVFNFA 544 (1145)
T ss_pred HHhhhhhcchhHHHHHHhhcCccCCHHHH-HHHHHHHhcceeeHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 345789999999998877421 122222 22221111 111 245555555666654555
Q ss_pred HHHHHHHHHHHHHHhhh
Q 024890 210 AVNLVLAGILLFSSFKL 226 (261)
Q Consensus 210 ~I~~ifG~fLLytgiK~ 226 (261)
..+.+|.++|.+-+-+.
T Consensus 545 ~qit~F~AlLaLD~rR~ 561 (1145)
T TIGR00918 545 AVLLVFPAILSLDLRRR 561 (1145)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66777888887777654
No 59
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=53.98 E-value=1.6e+02 Score=26.15 Aligned_cols=61 Identities=20% Similarity=0.178 Sum_probs=32.7
Q ss_pred HhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHH
Q 024890 156 SLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFE--AVNLVLAGI 218 (261)
Q Consensus 156 sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f~--~I~~ifG~f 218 (261)
..+..+....+.+.+. .|++.|.++.-+.-.+..+.-++...++..+.+.+. +..++.+++
T Consensus 92 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 154 (377)
T PRK11102 92 AAAAASVVINALMRDM--FPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALA 154 (377)
T ss_pred HHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 3445555555666664 577777777644434334444455555666666443 344444433
No 60
>PRK10621 hypothetical protein; Provisional
Probab=53.11 E-value=1.7e+02 Score=26.31 Aligned_cols=37 Identities=8% Similarity=0.099 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHhhhhhc
Q 024890 193 FRLSLILLGTATLQRFE--AVNLVLAGILLFSSFKLFAS 229 (261)
Q Consensus 193 ~RiIfI~~G~~Ll~~f~--~I~~ifG~fLLytgiK~~~~ 229 (261)
..++...+|+++++..+ ++..++|++++..++.++..
T Consensus 86 ~~l~Ga~~G~~l~~~l~~~~l~~~~~~~ll~~~~~~l~~ 124 (266)
T PRK10621 86 MTFVGSMSGALLVQYVQADILRQILPILVIGIGLYFLLM 124 (266)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 44566777888877554 57888999999999888754
No 61
>PRK03545 putative arabinose transporter; Provisional
Probab=51.89 E-value=1.9e+02 Score=26.32 Aligned_cols=50 Identities=20% Similarity=0.177 Sum_probs=26.0
Q ss_pred HHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHH
Q 024890 166 VLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA--VNLVLAG 217 (261)
Q Consensus 166 a~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f~~--I~~ifG~ 217 (261)
+++.+. .|++.|.|+.-+=..+.-+.-.+...++..+.+.+.| ..++.++
T Consensus 120 ~~i~~~--~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~ 171 (390)
T PRK03545 120 SLAIRV--APAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGG 171 (390)
T ss_pred HHHHHh--CChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHH
Confidence 444443 5776666554432233334555666666667765554 4444444
No 62
>PRK05349 Na(+)-translocating NADH-quinone reductase subunit B; Provisional
Probab=51.35 E-value=1.2e+02 Score=30.43 Aligned_cols=49 Identities=20% Similarity=0.325 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHh-------hhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHH
Q 024890 144 ASEFFAGYILEQSL-------SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVF 193 (261)
Q Consensus 144 a~eFltgylLE~sL-------SvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~ 193 (261)
+..++++.+.|.+. --|.++|-++++.. .+|+.----+...|...|+++
T Consensus 125 ~vs~~~a~~~E~l~~~~r~k~~~dga~VTglLlal-~LPp~~P~W~vviG~~fAIvi 180 (405)
T PRK05349 125 LVSFIVGGFWEVLFAVVRGHEVNEGFFVTSILFAL-ILPPTIPLWQVALGISFGVVI 180 (405)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHH-HCCCCchHHHHHHHHHHHHHH
Confidence 34455555666432 14556666666653 567666666666666666653
No 63
>PF03899 ATP_synt_I: ATP synthase I chain; InterPro: IPR005598 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. The atp operon of most prokaryotes contains the structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein of unknown function. A possible function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex []. A role in magnesium uptake has also been suggested []. More information about this protein can be found at Protein of the Month: ATP synthases [].
Probab=50.58 E-value=1e+02 Score=22.90 Aligned_cols=72 Identities=19% Similarity=0.206 Sum_probs=40.6
Q ss_pred HHhHHHhhcChhhHHHHHHHHHHHHHhhhhhHHHHHHHhccC--CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024890 131 FGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYF--KVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF 208 (261)
Q Consensus 131 Fg~~i~~~~G~~~a~eFltgylLE~sLSvDNafVfa~If~~F--kvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f 208 (261)
+.+..++..+.+.+..++.| ...|.=|...++.....+ ++.+ .+++... ....+...|.+.+.+...+.-++
T Consensus 13 ~~~~~~~~~~~~~~~s~~~G----~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~g~~~R~~l~~~~~~~~~~~ 86 (100)
T PF03899_consen 13 LALVFFLFFGWPVALSFLLG----GLISLLNFFLLARRVFRLAGALAM-DPGRAVR-AMYLGYFIRLALTILLFILAFKF 86 (100)
T ss_pred HHHHHHHHhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhcc-ccchHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444566555555544 455666888888776210 1222 2233333 34445889999888877777655
No 64
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=50.51 E-value=1.8e+02 Score=28.98 Aligned_cols=19 Identities=21% Similarity=0.338 Sum_probs=14.1
Q ss_pred hhhhhhHHHHHHHHHHHHH
Q 024890 113 SYTSSVKTVAFCVSTAVAF 131 (261)
Q Consensus 113 s~keAl~wS~~wV~LAllF 131 (261)
+.+++++...+.-++|+++
T Consensus 251 ~w~~Y~~q~vflas~alal 269 (432)
T PF06963_consen 251 GWRTYFRQPVFLASFALAL 269 (432)
T ss_pred cHHHHHhCHHHHHHHHHHH
Confidence 4677888888887777665
No 65
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=50.29 E-value=3.1e+02 Score=30.04 Aligned_cols=48 Identities=17% Similarity=0.169 Sum_probs=24.8
Q ss_pred HhhhhhH---HHHHHHhccCCC-ChhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024890 156 SLSVDNL---FVFVLIFKYFKV-PVMYQNRVLSYGIAGAIVFRLSLILLGTAT 204 (261)
Q Consensus 156 sLSvDNa---fVfa~If~~Fkv-P~~~Q~RvL~~GI~gAiv~RiIfI~~G~~L 204 (261)
.+.+|.+ ||.+++++.... +.+. +...++-.+.-++-=++|+++|+.+
T Consensus 261 lLggSGfLAVFVAGl~~gn~~~~~~~~-~~~~f~e~ie~LLn~~lFVlLGa~L 312 (810)
T TIGR00844 261 MLGVDDLLVSFFAGTAFAWDGWFAQKT-HESNVSNVIDVLLNYAYFVYLGSIL 312 (810)
T ss_pred HhccccHHHHHHHHHHHhcccchhhhH-HHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 5566653 455566664322 2222 2334555554444445577777765
No 66
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=49.27 E-value=2.3e+02 Score=26.54 Aligned_cols=61 Identities=11% Similarity=0.102 Sum_probs=31.5
Q ss_pred HHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hH--HHHHHHH
Q 024890 155 QSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF-EA--VNLVLAG 217 (261)
Q Consensus 155 ~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f-~~--I~~ifG~ 217 (261)
..-+.-...+...+-+. .|+++|-++.-+-..+..+.=++...++..+.+.+ .| .+++.|+
T Consensus 143 ~~~~~~~~~~~~~~~~~--~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~ 206 (465)
T TIGR00894 143 LAQGSVSPATHKIIVKW--APPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGI 206 (465)
T ss_pred HhcccchhhHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhH
Confidence 33344444445555554 57766666554444433444445555566666653 44 4554444
No 67
>PRK10649 hypothetical protein; Provisional
Probab=48.14 E-value=2.5e+02 Score=28.89 Aligned_cols=51 Identities=16% Similarity=0.238 Sum_probs=26.2
Q ss_pred HhhcChhhHHHHHHHH----HHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHH
Q 024890 136 GFIEGASKASEFFAGY----ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGA 190 (261)
Q Consensus 136 ~~~~G~~~a~eFltgy----lLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gA 190 (261)
|++.|......+++|+ -+..+|...=+..+.+.+ +|++.|+.+.++|++..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~p~~~~~~~~~~~~vl~ 79 (577)
T PRK10649 25 WFFSTLLQAIIYISGYSGTNGFRDALLFSSLWLIPVFL----FPRRIRIIAAVIGVVLW 79 (577)
T ss_pred HHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHH
Confidence 5555555555555553 223333333332233322 58887777777777633
No 68
>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=47.58 E-value=2.5e+02 Score=27.34 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhHHHhhcChhhHHHHHHHHH
Q 024890 123 FCVSTAVAFGLGVGFIEGASKASEFFAGYI 152 (261)
Q Consensus 123 ~wV~LAllFg~~i~~~~G~~~a~eFltgyl 152 (261)
.|+.+.+.|-.++..-.|+..+-.-++.|+
T Consensus 54 ~w~li~~SflyGvlHAlgPGHgKaviasyl 83 (303)
T COG2215 54 GWTLIPLSFLYGVLHALGPGHGKAVIATYL 83 (303)
T ss_pred HHHHHHHHHHHHHHhccCCCcchHHHHHHH
Confidence 788988888888888877765544444443
No 69
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=47.47 E-value=1.9e+02 Score=27.20 Aligned_cols=23 Identities=17% Similarity=0.105 Sum_probs=15.7
Q ss_pred cchhhhhhhHHHHHHHHHHHHHH
Q 024890 110 GRESYTSSVKTVAFCVSTAVAFG 132 (261)
Q Consensus 110 ~~~s~keAl~wS~~wV~LAllFg 132 (261)
.+.+.|++....++...++++.+
T Consensus 93 G~ls~~~a~~~~~~~~~lal~la 115 (308)
T PRK12887 93 GEFSRRQGQRIVIITGILALILA 115 (308)
T ss_pred cccCHHHHHHHHHHHHHHHHHHH
Confidence 46778888877776666655544
No 70
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=45.35 E-value=2.5e+02 Score=25.96 Aligned_cols=24 Identities=13% Similarity=-0.112 Sum_probs=19.5
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHH
Q 024890 109 EGRESYTSSVKTVAFCVSTAVAFG 132 (261)
Q Consensus 109 ~~~~s~keAl~wS~~wV~LAllFg 132 (261)
+++++.|||+..++++..++++.+
T Consensus 85 sG~is~~~a~~~~~~l~~~g~~l~ 108 (296)
T PRK04375 85 TGRISPREALIFGLVLGVLGFLLL 108 (296)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHH
Confidence 468889999999988888877664
No 71
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=44.76 E-value=2.2e+02 Score=25.04 Aligned_cols=57 Identities=16% Similarity=-0.059 Sum_probs=28.1
Q ss_pred hhHHHHHHHhccCCCChhhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhH--HHHHHHHH
Q 024890 160 DNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI--VFRLSLILLGTATLQRFEA--VNLVLAGI 218 (261)
Q Consensus 160 DNafVfa~If~~FkvP~~~Q~RvL~~GI~gAi--v~RiIfI~~G~~Ll~~f~~--I~~ifG~f 218 (261)
-+....+++.+. .|++.|.++...|+..+. +.-.+-..++..+.+.+.| ..++.++.
T Consensus 104 ~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~ 164 (375)
T TIGR00899 104 ANPQLFALAREH--ADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALA 164 (375)
T ss_pred hHHHHHHHHHHH--hhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHH
Confidence 333334444442 355555555545543221 3345556666677765444 55555554
No 72
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=44.52 E-value=5.2e+02 Score=29.30 Aligned_cols=19 Identities=32% Similarity=0.691 Sum_probs=14.4
Q ss_pred HHHHHhhhhhHHHHHHHhc
Q 024890 152 ILEQSLSVDNLFVFVLIFK 170 (261)
Q Consensus 152 lLE~sLSvDNafVfa~If~ 170 (261)
+|=..+++||+|++.-...
T Consensus 643 FLvL~IGVD~ifilv~~~~ 661 (1204)
T TIGR00917 643 FLVLAVGVDNIFILVQTYQ 661 (1204)
T ss_pred HHHHHHHhhHHHHHHHHHH
Confidence 3445789999999987664
No 73
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=44.34 E-value=1.4e+02 Score=25.63 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=17.9
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHH
Q 024890 109 EGRESYTSSVKTVAFCVSTAVAFG 132 (261)
Q Consensus 109 ~~~~s~keAl~wS~~wV~LAllFg 132 (261)
+++.+.+++...+.....++++++
T Consensus 64 ~g~i~~~~~~~~~~~~~~l~l~l~ 87 (257)
T PF01040_consen 64 SGRISPRQALIFALILLLLGLLLA 87 (257)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Confidence 356677888888888777777766
No 74
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=41.87 E-value=2.6e+02 Score=25.41 Aligned_cols=26 Identities=12% Similarity=0.011 Sum_probs=20.7
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHhH
Q 024890 109 EGRESYTSSVKTVAFCVSTAVAFGLG 134 (261)
Q Consensus 109 ~~~~s~keAl~wS~~wV~LAllFg~~ 134 (261)
+++++.|+|+.+..+...++++.+..
T Consensus 76 sG~is~~~a~~~~~~l~~~~~~l~~~ 101 (279)
T PRK09573 76 SGRISLKEAKIFSITLFIVGLILSIF 101 (279)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999888888766554
No 75
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=40.75 E-value=1.4e+02 Score=21.54 Aligned_cols=14 Identities=21% Similarity=0.221 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHH
Q 024890 210 AVNLVLAGILLFSS 223 (261)
Q Consensus 210 ~I~~ifG~fLLytg 223 (261)
+..+++|+.|+..|
T Consensus 54 ~~~~igg~iLi~iG 67 (67)
T PF02659_consen 54 YAEWIGGIILIFIG 67 (67)
T ss_pred HHHHHHHHHHHHHC
Confidence 57888998888754
No 76
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=40.67 E-value=1.9e+02 Score=29.99 Aligned_cols=61 Identities=20% Similarity=0.169 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhhhhhHHHH---HHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024890 147 FFAGYILEQSLSVDNLFVF---VLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 210 (261)
Q Consensus 147 FltgylLE~sLSvDNafVf---a~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f~~ 210 (261)
+....+++..+++-.+..+ ..|.+ .+|+++|.|+--+--.+..+-.++-..++..+. .+.|
T Consensus 115 l~~L~i~R~llGvaEA~~~A~~syI~~--WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s~gW 178 (511)
T TIGR00806 115 VWHMQLMEVFYSVTMAARIAYSSYIFS--LVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-TLGW 178 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCc
Confidence 4444556666666555444 34445 389999999988877777788888777777744 4666
No 77
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=40.63 E-value=2.9e+02 Score=25.32 Aligned_cols=64 Identities=13% Similarity=-0.007 Sum_probs=34.3
Q ss_pred HHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hH--HHHHHHHHHH
Q 024890 155 QSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF-EA--VNLVLAGILL 220 (261)
Q Consensus 155 ~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f-~~--I~~ifG~fLL 220 (261)
..-+.-+..+-+++.+. .|+++|.++.-+-..|.-+.-++...++..+++.+ .| ..++.+++.+
T Consensus 106 ~~~~~~~~~~~al~~~~--~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l 172 (402)
T PRK11902 106 FLSASQDIVFDAYSTDV--LHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLML 172 (402)
T ss_pred HHHHHHHHHHHHHHHHh--cChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHH
Confidence 34444556667777775 78887777655444433333333344455566532 34 4444454433
No 78
>PRK06433 NADH dehydrogenase subunit J; Provisional
Probab=39.65 E-value=1.7e+02 Score=23.11 Aligned_cols=44 Identities=14% Similarity=0.211 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhccCCCCCC
Q 024890 193 FRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDL 236 (261)
Q Consensus 193 ~RiIfI~~G~~Ll~~f~~I~~ifG~fLLytgiK~~~~~eee~d~ 236 (261)
.=++++++++-.+.-.+-+.|+|+.-.++...-|+.+.+|++++
T Consensus 42 ~a~l~~lL~a~fvA~~qi~VYaGai~vLflF~iml~~~~~~~~~ 85 (88)
T PRK06433 42 VAVLYVMLNAEFLAAVQVLVYVGAVLILITFAVMLTKGEEGEES 85 (88)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCC
Confidence 34456666666666666788889887666655444444333333
No 79
>PRK13592 ubiA prenyltransferase; Provisional
Probab=38.66 E-value=3.5e+02 Score=26.15 Aligned_cols=42 Identities=17% Similarity=0.216 Sum_probs=30.7
Q ss_pred CCCCCCCCCCCcccChhhhhhccchhhhhhhHHHHHHHHHHHHHHhHH
Q 024890 88 SHENDNTSHSPTTVDDAERQIEGRESYTSSVKTVAFCVSTAVAFGLGV 135 (261)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~s~keAl~wS~~wV~LAllFg~~i 135 (261)
..|-|..++.-+..+ +++++.|+|...+.+-++++++.+...
T Consensus 70 D~EIDrIN~P~RPLP------sG~VS~~~A~~~si~L~~~~l~L~~l~ 111 (299)
T PRK13592 70 DYETDRRLFPHRALP------SGRVKKKDLAIALSFIVAVSVLLNVLF 111 (299)
T ss_pred hHHHhhhcCCCCCCC------cCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667677888 458899999999988877777666544
No 80
>COG0730 Predicted permeases [General function prediction only]
Probab=38.48 E-value=2.8e+02 Score=24.54 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhhh--HHHHHHHHHHHHHHhhhhhcc
Q 024890 195 LSLILLGTATLQRFE--AVNLVLAGILLFSSFKLFASE 230 (261)
Q Consensus 195 iIfI~~G~~Ll~~f~--~I~~ifG~fLLytgiK~~~~~ 230 (261)
++-.++|+.+....+ +...++|.++++.+++++...
T Consensus 84 ~~G~~lG~~l~~~~~~~~l~~~~~~~ll~~~~~~~~~~ 121 (258)
T COG0730 84 LIGAFLGALLALLLPAELLKLLFGLLLLLLALYMLLGP 121 (258)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566677777776544 466679999999999998764
No 81
>PF06011 TRP: Transient receptor potential (TRP) ion channel; InterPro: IPR010308 This family consists of hypothetical proteins of unknown function found in fungi.
Probab=37.48 E-value=4e+02 Score=25.97 Aligned_cols=18 Identities=22% Similarity=0.336 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024890 183 LSYGIAGAIVFRLSLILL 200 (261)
Q Consensus 183 L~~GI~gAiv~RiIfI~~ 200 (261)
-.+....+.++|.++++.
T Consensus 201 ~~~~~~~g~~lr~~li~~ 218 (438)
T PF06011_consen 201 HWWSFLKGNLLRLLLIFF 218 (438)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 345778888999998655
No 82
>COG2836 Uncharacterized conserved protein [Function unknown]
Probab=37.19 E-value=1.8e+02 Score=27.39 Aligned_cols=71 Identities=24% Similarity=0.392 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhccC-----CCCCCCccHHHHHhh--hcccccc
Q 024890 181 RVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEE-----DDTDLSDNFIVKTCQ--RFIPVTS 253 (261)
Q Consensus 181 RvL~~GI~gAiv~RiIfI~~G~~Ll~~f~~I~~ifG~fLLytgiK~~~~~e-----ee~d~~~n~ivr~ir--k~lPvT~ 253 (261)
|++.|-++||++-=+--.+..+.-++ .+...+-|++||+.|+.++.... ...+.-+..+.|.++ |.+|+.+
T Consensus 54 Ri~SYallG~i~G~lG~~l~~~~~~~--~~l~i~ag~~li~lGL~l~~~~~~~~~~~~~p~i~~~~~~~l~~~r~l~~~~ 131 (232)
T COG2836 54 RILSYALLGAILGALGVSLGQSAGLR--GVLFIIAGALLIALGLYLLARGGMWSGALKLPFIGGFLWRLLKPIRLLPLKP 131 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcccchhhHHhhchhcchHHHHhhhhhhccccCc
Confidence 67778777776533332232332332 35667779999999998854421 122223345566666 5555544
No 83
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=36.52 E-value=3.7e+02 Score=27.31 Aligned_cols=19 Identities=32% Similarity=0.412 Sum_probs=8.9
Q ss_pred HhhcChhhHH-HHHHHHHHH
Q 024890 136 GFIEGASKAS-EFFAGYILE 154 (261)
Q Consensus 136 ~~~~G~~~a~-eFltgylLE 154 (261)
+.+.|.|.+. .|+.-|+.|
T Consensus 246 FlYVG~Eva~gsfl~~y~~~ 265 (422)
T COG0738 246 FLYVGAEVAIGSFLVSYLEE 265 (422)
T ss_pred HHHHhHHHHHHHHHHHHHHh
Confidence 3344555432 355555555
No 84
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=36.51 E-value=3e+02 Score=24.23 Aligned_cols=49 Identities=16% Similarity=0.050 Sum_probs=25.7
Q ss_pred hhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024890 160 DNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 210 (261)
Q Consensus 160 DNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f~~ 210 (261)
-.....+++.+. .|+++|.++.-+.-....+.-.+...++..+.+.+.|
T Consensus 110 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 158 (385)
T TIGR00710 110 GSVISQALVRDI--YPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSW 158 (385)
T ss_pred HHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence 344455566554 5666565554433333334445555666677765444
No 85
>PF12349 Sterol-sensing: Sterol-sensing domain of SREBP cleavage-activation
Probab=36.04 E-value=2.6e+02 Score=23.48 Aligned_cols=51 Identities=24% Similarity=0.220 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhHHHhhcChhhHHHHH-HHHHHHHHhhhhhHHHHHHHhcc
Q 024890 121 VAFCVSTAVAFGLGVGFIEGASKASEFF-AGYILEQSLSVDNLFVFVLIFKY 171 (261)
Q Consensus 121 S~~wV~LAllFg~~i~~~~G~~~a~eFl-tgylLE~sLSvDNafVfa~If~~ 171 (261)
+++=++.+++++.++....|.+...-.. ..-.+=...++||.|+++-.+..
T Consensus 12 ~i~~v~~s~~~a~~i~~~~g~~~~~~~~e~~PFlvl~iG~dn~f~l~~~~~~ 63 (153)
T PF12349_consen 12 GIVSVAFSVLFALGICSLFGVPFSLIPSEVLPFLVLGIGVDNMFVLARAVRR 63 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3444556666666666666755432221 22334457899999999988774
No 86
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=35.31 E-value=1.3e+02 Score=26.78 Aligned_cols=55 Identities=9% Similarity=0.136 Sum_probs=38.2
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhH--HHHHHHHHHHHHHhhhhhc
Q 024890 175 PVMYQNRVLSYGIAGAIVFRLSLILLGTATLQR--------FEA--VNLVLAGILLFSSFKLFAS 229 (261)
Q Consensus 175 P~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~--------f~~--I~~ifG~fLLytgiK~~~~ 229 (261)
|..||++....-++.+..+=++-+.+|..++.. |+| +-.+.|+.+.-..++.+++
T Consensus 8 k~~YRk~~n~v~~~~v~~lai~sl~~s~llI~lFg~~~~~nf~~NllGVil~~~~~~~~l~~~k~ 72 (165)
T PF11286_consen 8 KERYRKHLNRVIVACVASLAILSLAFSQLLIALFGGESGGNFHWNLLGVILGLLLTSALLRQLKT 72 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeeeHHHHHHHHHHHHHHHHHHcc
Confidence 567899988888888888888888888888884 455 3444455555555555554
No 87
>COG4239 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=35.10 E-value=4e+02 Score=26.30 Aligned_cols=72 Identities=15% Similarity=0.206 Sum_probs=43.2
Q ss_pred ccChhhhhhccch--hhhhhhHHHHHHHHHHHHHHhHHHhhcChhh-HHHHHHHHHHHHHhhhhhHHHHHHHhcc
Q 024890 100 TVDDAERQIEGRE--SYTSSVKTVAFCVSTAVAFGLGVGFIEGASK-ASEFFAGYILEQSLSVDNLFVFVLIFKY 171 (261)
Q Consensus 100 ~~~~~~~~~~~~~--s~keAl~wS~~wV~LAllFg~~i~~~~G~~~-a~eFltgylLE~sLSvDNafVfa~If~~ 171 (261)
-+||..++.--++ ++|-++..++..+..+.+.|+..+-..|--. .+..+.--.+|.-=++--+++..+++..
T Consensus 124 GtDdqgRDV~ARliygfRiSvLfgL~lT~~SaliGv~~GA~qGyfgg~vdL~~QR~IEvws~mP~lyllii~as~ 198 (341)
T COG4239 124 GTDDQGRDVLARLIYGFRISVLFGLSLTLISALIGVLAGALQGYFGGWVDLLGQRFIEVWSGMPTLYLLIILASI 198 (341)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHhhHHHHHhcCcHHHHHHHHHHH
Confidence 3455555544343 5788888888887777777776665433211 2223333467777677666666666665
No 88
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=35.07 E-value=3.4e+02 Score=24.51 Aligned_cols=37 Identities=19% Similarity=-0.008 Sum_probs=22.5
Q ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024890 174 VPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 210 (261)
Q Consensus 174 vP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f~~ 210 (261)
.|++.+.++.-+...+..+...+...++..+.+.+.|
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~ 161 (394)
T PRK11652 125 YEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGW 161 (394)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence 4666566655555555666666666667777765444
No 89
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=34.60 E-value=3.7e+02 Score=24.79 Aligned_cols=47 Identities=13% Similarity=0.084 Sum_probs=25.3
Q ss_pred HHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024890 162 LFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 210 (261)
Q Consensus 162 afVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f~~ 210 (261)
....+++.+. .|+++|.++.-+--.+..+.-.+...++.++.+.+.|
T Consensus 109 ~~~~~~i~~~--~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w 155 (485)
T TIGR00711 109 PLSFSTLLNI--YPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHW 155 (485)
T ss_pred HHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCc
Confidence 3444555554 5777666655443333334445555666677765443
No 90
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=33.98 E-value=4.1e+02 Score=25.02 Aligned_cols=22 Identities=9% Similarity=0.128 Sum_probs=17.5
Q ss_pred ccchhhhhhhHHHHHHHHHHHH
Q 024890 109 EGRESYTSSVKTVAFCVSTAVA 130 (261)
Q Consensus 109 ~~~~s~keAl~wS~~wV~LAll 130 (261)
+.+++.|||+.++++...++++
T Consensus 78 sG~is~~~A~~~~~~~~~~~~~ 99 (286)
T PRK12895 78 SGRIKMREAIAFTIIFIAIFEI 99 (286)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
Confidence 4688899999998887776644
No 91
>PRK01024 Na(+)-translocating NADH-quinone reductase subunit B; Provisional
Probab=33.85 E-value=3.4e+02 Score=28.24 Aligned_cols=31 Identities=19% Similarity=0.335 Sum_probs=13.2
Q ss_pred hhHHHHHHHhccCCCChhhhhHHHHHHHHHHH
Q 024890 160 DNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI 191 (261)
Q Consensus 160 DNafVfa~If~~FkvP~~~Q~RvL~~GI~gAi 191 (261)
|.++|=++++.. -+|+..=--....|+..|+
T Consensus 149 dsalVTglLlaL-~LPp~~P~W~~avG~~faI 179 (503)
T PRK01024 149 EGLLVTGILYPL-ILPPTIPYWMAALGIAFGV 179 (503)
T ss_pred hhHHHHHHHHHH-hCCCCCcHHHHHHHHHHHH
Confidence 444444444432 4454433333444444443
No 92
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=33.56 E-value=6.2e+02 Score=27.04 Aligned_cols=49 Identities=8% Similarity=-0.109 Sum_probs=31.9
Q ss_pred hhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024890 160 DNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 210 (261)
Q Consensus 160 DNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f~~ 210 (261)
-+....+++-.. +|++++.++.-+=..+.-+.-++...+|..++..+.|
T Consensus 125 ~~p~~~a~l~~~--~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~ 173 (1140)
T PRK06814 125 FGPIKYSILPDH--LNKDELLGANALVEAGTFIAILLGTIIGGLATISGNF 173 (1140)
T ss_pred hchHHHHhhHhh--cCccccchhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 334455555554 6777666665555555556788888888888886665
No 93
>PRK10263 DNA translocase FtsK; Provisional
Probab=32.93 E-value=3.9e+02 Score=31.07 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 024890 185 YGIAGAIVFRLSLILLGTATLQRFEAVN 212 (261)
Q Consensus 185 ~GI~gAiv~RiIfI~~G~~Ll~~f~~I~ 212 (261)
+|..|++++=++++++|..++..++|+.
T Consensus 158 fG~vGa~LILLlllLIGLiLlTglSwls 185 (1355)
T PRK10263 158 LHSSGGTIALLCVWAAGLTLFTGWSWVT 185 (1355)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3445555555555555666665566643
No 94
>PF01384 PHO4: Phosphate transporter family; InterPro: IPR001204 The PHO-4 family of transporters includes the phosphate-repressible phosphate permease (PHO-4) from Neurospora crassa which is probably a sodium-phosphate symporter []. This family also includes the human leukemia virus receptor.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0006817 phosphate ion transport, 0016020 membrane
Probab=32.90 E-value=4.4e+02 Score=25.09 Aligned_cols=115 Identities=12% Similarity=0.129 Sum_probs=56.0
Q ss_pred chhhhhhhHHHHHHHHHHHHH-HhHHHhhcChhh-HHHHHH----H-HHHHHHhhhhhHHHHHHHhccCCCChhhhhHHH
Q 024890 111 RESYTSSVKTVAFCVSTAVAF-GLGVGFIEGASK-ASEFFA----G-YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVL 183 (261)
Q Consensus 111 ~~s~keAl~wS~~wV~LAllF-g~~i~~~~G~~~-a~eFlt----g-ylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL 183 (261)
-.++|+|+..+.++..++-++ |..+--+.+... -.+.++ . +.+-..-..=-+.+...+..++++|-.-= .++
T Consensus 18 al~~~~A~ila~i~~~lGa~l~G~~V~~ti~~~iv~~~~~~~~~~~~~~~~~~~al~~a~iw~~i~t~~glPvStT-hal 96 (326)
T PF01384_consen 18 ALTPRQALILAAIFNFLGALLFGTAVAETIGKGIVDPSYFTVDDPQILMIGMLAALLAAAIWLLIATWLGLPVSTT-HAL 96 (326)
T ss_pred ccCHHHHHHHHHHHHHhHHHHhhHHHHHHHHhccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhCCCchHH-HHH
Confidence 345789999988888777555 333332222110 011111 0 00111111123445666677788998744 456
Q ss_pred HHHHHHHHH-HHH---------HHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhc
Q 024890 184 SYGIAGAIV-FRL---------SLILLGTATLQRFEAVNLVLAGILLFSSFKLFAS 229 (261)
Q Consensus 184 ~~GI~gAiv-~Ri---------IfI~~G~~Ll~~f~~I~~ifG~fLLytgiK~~~~ 229 (261)
.=|++|+-+ .+. +.-.+..+++. .+....-.+++|..++.+..
T Consensus 97 vGal~G~~l~~~g~~~v~w~~~~~~I~~~wv~s---Plia~~~a~~l~~~~~~~~~ 149 (326)
T PF01384_consen 97 VGALIGAGLASGGFSAVNWSKGLLKIVLSWVIS---PLIAFILAYILYRLIRRIFL 149 (326)
T ss_pred HHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 666666654 331 22222333332 34444445666666666544
No 95
>TIGR00898 2A0119 cation transport protein.
Probab=32.04 E-value=4.4e+02 Score=24.83 Aligned_cols=55 Identities=13% Similarity=-0.057 Sum_probs=28.3
Q ss_pred hHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024890 161 NLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGI 218 (261)
Q Consensus 161 NafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f~~I~~ifG~f 218 (261)
......++.+. .|+++|.++..+...+..+--++..+++..+. .+.|..++.++.
T Consensus 198 ~~~~~~~~~e~--~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~-~wr~~~~~~~i~ 252 (505)
T TIGR00898 198 WVQAVVLNTEF--LPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP-DWRWLQLAVSLP 252 (505)
T ss_pred HHHHHHHhhee--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHH
Confidence 44444555554 68877777655443333334444444443333 355665555543
No 96
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=31.97 E-value=5.5e+02 Score=25.94 Aligned_cols=93 Identities=12% Similarity=-0.042 Sum_probs=55.5
Q ss_pred hhhhhHHHHHHHHHHHHHHhHHHhhcChhhHHHHHHHHHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHH
Q 024890 114 YTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVF 193 (261)
Q Consensus 114 ~keAl~wS~~wV~LAllFg~~i~~~~G~~~a~eFltgylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~ 193 (261)
-|+-+..+-++-++..+.-..+.+......+.-+....++-..-+..|-..-+++=+- +|+++-.++.-+.-..--+.
T Consensus 74 rrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~l--V~~~~L~~A~al~s~~~nia 151 (524)
T PF05977_consen 74 RRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPEL--VPKEDLPAANALNSISFNIA 151 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccHhhHHHHHHHHHHHHHHH
Confidence 4566666655544332222222222223334444444556666666666666666554 88888788876666666688
Q ss_pred HHHHHHHHHHHHHhh
Q 024890 194 RLSLILLGTATLQRF 208 (261)
Q Consensus 194 RiIfI~~G~~Ll~~f 208 (261)
|++-..+|..++..+
T Consensus 152 r~iGPalgG~Lva~~ 166 (524)
T PF05977_consen 152 RIIGPALGGILVAFF 166 (524)
T ss_pred HhccchHHHHHHHHH
Confidence 999988888888744
No 97
>PF06011 TRP: Transient receptor potential (TRP) ion channel; InterPro: IPR010308 This family consists of hypothetical proteins of unknown function found in fungi.
Probab=31.72 E-value=4.3e+02 Score=25.74 Aligned_cols=80 Identities=23% Similarity=0.299 Sum_probs=47.1
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHhhcChhhHHHHHHHHHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHH
Q 024890 115 TSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFR 194 (261)
Q Consensus 115 keAl~wS~~wV~LAllFg~~i~~~~G~~~a~eFltgylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~R 194 (261)
.+..+|.+.+++..++.|+.++...+... .+-+...++|.+. ++...+.+ |=+ .++.-...+ ..-++|
T Consensus 296 ~~~~~f~~~~~~~~~~~~~~ig~~q~~g~-~Qv~~llv~e~~~-----l~~~~~~~----Py~-~~~~n~~~~-~~~~~~ 363 (438)
T PF06011_consen 296 PSRWWFFIVWLLYKFLRGIFIGFLQGSGI-AQVIALLVIEVIY-----LILLFILR----PYM-DKRTNVLNI-ILSVVR 363 (438)
T ss_pred cchhhhHHHHHHHHHHHHHheeeeccCcH-HHHHHHHHHHHHH-----HHHHHHhC----hhc-cccccHHHH-HHHHHH
Confidence 45678888889999998888887655433 3444555677652 22333333 322 223333333 334677
Q ss_pred HHHHHHHHHHHH
Q 024890 195 LSLILLGTATLQ 206 (261)
Q Consensus 195 iIfI~~G~~Ll~ 206 (261)
++-.++...++.
T Consensus 364 ~i~~~l~i~f~~ 375 (438)
T PF06011_consen 364 LITLFLLIAFLP 375 (438)
T ss_pred HHHHHHHHHHhc
Confidence 777777776664
No 98
>CHL00016 ndhG NADH dehydrogenase subunit 6
Probab=30.89 E-value=2.3e+02 Score=24.80 Aligned_cols=38 Identities=21% Similarity=0.096 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhccC
Q 024890 194 RLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEE 231 (261)
Q Consensus 194 RiIfI~~G~~Ll~~f~~I~~ifG~fLLytgiK~~~~~e 231 (261)
=++++++|+..+.-.+-+.|+||+..++..+=|+.+.+
T Consensus 47 A~ly~lL~a~Fla~~qIiVYvGAI~VLflFvIMll~~~ 84 (182)
T CHL00016 47 SLFYILLNADFVAAAQLLIYVGAINVLIIFAVMFMNGP 84 (182)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 34566777777777778999999998888888877644
No 99
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=30.36 E-value=5e+02 Score=24.96 Aligned_cols=38 Identities=21% Similarity=0.119 Sum_probs=22.6
Q ss_pred ChhhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhH--HHHH
Q 024890 175 PVMYQNRVLSYGIAGAI--VFRLSLILLGTATLQRFEA--VNLV 214 (261)
Q Consensus 175 P~~~Q~RvL~~GI~gAi--v~RiIfI~~G~~Ll~~f~~--I~~i 214 (261)
|+++| ....|+.++. +.-.+-..+|..+.+.+.| ++++
T Consensus 125 ~~~~r--~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i 166 (495)
T PRK14995 125 EEKQR--NMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLI 166 (495)
T ss_pred CHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHH
Confidence 45444 4455666554 3556677778888876544 4444
No 100
>PLN02878 homogentisate phytyltransferase
Probab=30.11 E-value=5e+02 Score=24.87 Aligned_cols=38 Identities=18% Similarity=0.178 Sum_probs=27.0
Q ss_pred CCCCCCCcccChhhhhhccchhhhhhhHHHHHHHHHHHHHHhHH
Q 024890 92 DNTSHSPTTVDDAERQIEGRESYTSSVKTVAFCVSTAVAFGLGV 135 (261)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~s~keAl~wS~~wV~LAllFg~~i 135 (261)
|+.|..-+..+ ++++|.|+|...++++..++++.+..+
T Consensus 51 DkINkP~rPIp------SG~iS~~~a~~~~~~~~~lg~~la~~~ 88 (280)
T PLN02878 51 DKVNKPYLPLA------SGEFSVATGVAIVTSFAIMSFGMGWIV 88 (280)
T ss_pred cccCCCCCCCC------CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444456677 458899999998888888877766543
No 101
>PF06541 DUF1113: Protein of unknown function (DUF1113); InterPro: IPR010540 This family consists of several bacterial proteins of unknown function.
Probab=30.08 E-value=3.5e+02 Score=23.03 Aligned_cols=54 Identities=26% Similarity=0.415 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHhccCCCChhhh-----hHHHHHHHHHHHHHHHHHHHHHHHH
Q 024890 144 ASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQ-----NRVLSYGIAGAIVFRLSLILLGTAT 204 (261)
Q Consensus 144 a~eFltgylLE~sLSvDNafVfa~If~~FkvP~~~Q-----~RvL~~GI~gAiv~RiIfI~~G~~L 204 (261)
+.||++|+++|+.+... .=.+-+.|-..+ +-.+.||+++-+..|.+-..+-..+
T Consensus 71 ~lEyi~g~~le~~~~~~-------~WDYS~~~~n~~G~Icl~~s~~wg~l~~~~~~~i~P~~~~~~ 129 (157)
T PF06541_consen 71 ALEYITGWILEKLFGAR-------WWDYSDLPFNIQGRICLPFSLFWGLLGLLFVKVIHPLLFKLL 129 (157)
T ss_pred HHHHHHHHHHHHHHCCc-------cCcCCCCcCCcCCEehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999987542 112223444443 3478999999999999988875443
No 102
>PRK10457 hypothetical protein; Provisional
Probab=29.89 E-value=1e+02 Score=24.16 Aligned_cols=46 Identities=22% Similarity=0.366 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHhhhh
Q 024890 182 VLSYGIAGAIVFRLSLILLGTATLQRF---EAVNLVLAGILLFSSFKLF 227 (261)
Q Consensus 182 vL~~GI~gAiv~RiIfI~~G~~Ll~~f---~~I~~ifG~fLLytgiK~~ 227 (261)
-+..|++||++--.++-.+|..-..-| .++..+.|+.++...++.+
T Consensus 32 tiilGiiGA~iGg~l~~~~g~~~~~g~~~~~~i~aviGAiill~i~~~~ 80 (82)
T PRK10457 32 TIILGIVGAVVGGWISTFFGFGKVDGFNFGSFVVAVIGAIVVLFIYRKI 80 (82)
T ss_pred HHHHHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888877766555544322223 3455555555544445544
No 103
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=28.73 E-value=5e+02 Score=24.53 Aligned_cols=19 Identities=5% Similarity=0.004 Sum_probs=13.1
Q ss_pred ccchhhhhhhHHHHHHHHH
Q 024890 109 EGRESYTSSVKTVAFCVST 127 (261)
Q Consensus 109 ~~~~s~keAl~wS~~wV~L 127 (261)
+.+++.+||+.+++...++
T Consensus 90 sG~is~~~A~~~~~~~~~~ 108 (300)
T PRK13106 90 TGAIKISEAKALITAGLIL 108 (300)
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 4688899998876544443
No 104
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=28.51 E-value=2.3e+02 Score=20.41 Aligned_cols=69 Identities=22% Similarity=0.026 Sum_probs=38.5
Q ss_pred HHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHH
Q 024890 152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFE--AVNLVLAGILLFS 222 (261)
Q Consensus 152 lLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f~--~I~~ifG~fLLyt 222 (261)
+.-...+.-+....+.+.+. .|+++|.++.-+--.+..+...+...++..+.+... +..++.++..+..
T Consensus 60 ~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (141)
T TIGR00880 60 LQGFGAAFALVAGAALIADI--YPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAA 130 (141)
T ss_pred HHHHHHHHHHHhHHHHHHHH--CChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHH
Confidence 33444444445555556554 677777766555444445666666666777766433 4555555444433
No 105
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=28.36 E-value=4.6e+02 Score=23.86 Aligned_cols=27 Identities=11% Similarity=-0.040 Sum_probs=19.4
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHhHH
Q 024890 109 EGRESYTSSVKTVAFCVSTAVAFGLGV 135 (261)
Q Consensus 109 ~~~~s~keAl~wS~~wV~LAllFg~~i 135 (261)
+..++.|++.....+...++++.+.++
T Consensus 77 ~G~is~~~a~~~~~~~~~~~~~l~~~l 103 (283)
T TIGR01476 77 SGIISLREVRWNWLVLTVAGLLVALVL 103 (283)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778999888887777777665443
No 106
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.22 E-value=88 Score=24.53 Aligned_cols=21 Identities=24% Similarity=0.180 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhHHHhhc
Q 024890 119 KTVAFCVSTAVAFGLGVGFIE 139 (261)
Q Consensus 119 ~wS~~wV~LAllFg~~i~~~~ 139 (261)
+-.++|+.+|+++|+..+++.
T Consensus 4 ~lail~ivl~ll~G~~~G~fi 24 (71)
T COG3763 4 WLAILLIVLALLAGLIGGFFI 24 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444689999999998887654
No 107
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=27.44 E-value=3e+02 Score=23.91 Aligned_cols=48 Identities=15% Similarity=0.120 Sum_probs=33.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHhhhh
Q 024890 178 YQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA-----VNLVLAGILLFSSFKLF 227 (261)
Q Consensus 178 ~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f~~-----I~~ifG~fLLytgiK~~ 227 (261)
.+.+-+.||.++.++....+++=.++.. |+| |-|+.|..-.+.++-.+
T Consensus 89 ~~~~~~~w~gl~~l~~q~~~l~rLTf~e--~sWDvMEPVTYfv~~~~~i~~y~yf 141 (180)
T PF04678_consen 89 KRARRLLWGGLALLVVQFGILARLTFWE--YSWDVMEPVTYFVGYGTSILGYAYF 141 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc--cccchhhhHHHHHhHHHHHHHHHHH
Confidence 3556678888888888888877777762 666 67776665555555443
No 108
>PRK07946 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=27.20 E-value=4.5e+02 Score=23.40 Aligned_cols=106 Identities=17% Similarity=0.227 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhHHHhhcChhhHHHHHHHHHHHHHhhhhhHHHHHHHhccCCCChhhhhHH-----HHHHHHHHHHHHHH
Q 024890 122 AFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRV-----LSYGIAGAIVFRLS 196 (261)
Q Consensus 122 ~~wV~LAllFg~~i~~~~G~~~a~eFltgylLE~sLSvDNafVfa~If~~FkvP~~~Q~Rv-----L~~GI~gAiv~RiI 196 (261)
+.+++.+++|++++|.......--..+...+++-. =|++++++--.. +.|+-..... ..==+.=|+++=.|
T Consensus 6 ~~~i~~gvL~~~G~Ylll~rnLir~iiGl~il~~~---vnLlii~~G~~~-g~~PI~~~~~~~~~~~aDPLPQALVLTAI 81 (163)
T PRK07946 6 GLLVAIGVLTSAGVYLLLERSLTRMLLGLLLIGNG---VNLLILTAGGPA-GNPPILGRTSEYGETMADPLAQAMILTAI 81 (163)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH---HHHHHHHHhccC-CCCCeecCCcccccccCCcchHHHHHHHH
Confidence 56788889999999977643333334433455544 477777766332 2222211000 00112234444444
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhccCCCCCCCccHH
Q 024890 197 LILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFI 241 (261)
Q Consensus 197 fI~~G~~Ll~~f~~I~~ifG~fLLytgiK~~~~~eee~d~~~n~i 241 (261)
-|.+++ ..|++.|.+-.++.....+=+.|.++-.+
T Consensus 82 VIg~a~----------tA~~LaL~~r~y~~~gt~~v~~d~ed~~~ 116 (163)
T PRK07946 82 VITMGI----------TAFVLALAYRSYRLTTADEVEDDPEDTRV 116 (163)
T ss_pred HHHHHH----------HHHHHHHHHHHHHHhCCCccccCHHHHHH
Confidence 333332 22556666666666554443445555444
No 109
>PRK12505 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=27.08 E-value=2.6e+02 Score=24.60 Aligned_cols=80 Identities=21% Similarity=0.273 Sum_probs=44.2
Q ss_pred HHHHHHHHhHHHhhcChhhHHHHHHHHHHHHHhhhhhHHHHHHHhcc----CCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 024890 125 VSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKY----FKVPVMYQNRVLSYGIAGAIVFRLSLILL 200 (261)
Q Consensus 125 V~LAllFg~~i~~~~G~~~a~eFltgylLE~sLSvDNafVfa~If~~----FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~ 200 (261)
+-+-++|++++.+....+.+-.|..|.++=.++ +...+.+.. -.+|.+..+...-.|++.++..=++-++.
T Consensus 27 ~P~illfs~ylll~Gh~~PGGGFqgGlI~Aaa~-----iL~~la~G~~~~~~~l~~~~~~~l~~~Glli~~~~Gl~~ll~ 101 (159)
T PRK12505 27 APFVFTFGLFVMFHGADSPGGGFQGGVIVASVV-----LMLAFAFGIDATREWLDERLVVAIAVGGVLAFAAIGLGTVLL 101 (159)
T ss_pred HHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHH-----HHHHHHCCchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345566888887765555566787777654431 122222321 01344444445556777666666666666
Q ss_pred HHHHHHhhhH
Q 024890 201 GTATLQRFEA 210 (261)
Q Consensus 201 G~~Ll~~f~~ 210 (261)
|...++ +.|
T Consensus 102 G~~FL~-~~~ 110 (159)
T PRK12505 102 GGAFLE-YHL 110 (159)
T ss_pred Cchhhc-Ccc
Confidence 666665 444
No 110
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=26.94 E-value=4.8e+02 Score=23.63 Aligned_cols=26 Identities=15% Similarity=0.140 Sum_probs=20.3
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHhH
Q 024890 109 EGRESYTSSVKTVAFCVSTAVAFGLG 134 (261)
Q Consensus 109 ~~~~s~keAl~wS~~wV~LAllFg~~ 134 (261)
+.+++.||++..+++..+++++.+..
T Consensus 77 ~G~is~~~a~~~~~~l~~~g~~~~~~ 102 (276)
T PRK12882 77 SGAVSPRGALAFSILLFAAGVALAFL 102 (276)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999998888888776543
No 111
>PF11127 DUF2892: Protein of unknown function (DUF2892); InterPro: IPR021309 This family is conserved in bacteria. The function is not known.
Probab=26.52 E-value=2e+02 Score=20.69 Aligned_cols=16 Identities=13% Similarity=0.135 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHh
Q 024890 209 EAVNLVLAGILLFSSF 224 (261)
Q Consensus 209 ~~I~~ifG~fLLytgi 224 (261)
.|+..+.|+.++++|+
T Consensus 33 ~~~~~~~g~~ll~~g~ 48 (66)
T PF11127_consen 33 GWLLGFVGAMLLVTGI 48 (66)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5777788888888876
No 112
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=26.43 E-value=4.7e+02 Score=23.36 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHhhhhhcc
Q 024890 210 AVNLVLAGILLFSSFKLFASE 230 (261)
Q Consensus 210 ~I~~ifG~fLLytgiK~~~~~ 230 (261)
+++.+.+..++|+++.++..+
T Consensus 268 ~~~a~aaG~~lyv~~~ell~~ 288 (317)
T PF02535_consen 268 ILLAFAAGTFLYVAFVELLPE 288 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666677889999887654
No 113
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=26.31 E-value=5.4e+02 Score=24.01 Aligned_cols=31 Identities=13% Similarity=0.128 Sum_probs=24.6
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHhHHHhhcC
Q 024890 110 GRESYTSSVKTVAFCVSTAVAFGLGVGFIEG 140 (261)
Q Consensus 110 ~~~s~keAl~wS~~wV~LAllFg~~i~~~~G 140 (261)
..++.|+....+.+..++|++.|+++-+..|
T Consensus 72 g~is~~~v~~~~~~~~~~a~~~Gi~l~~~~~ 102 (284)
T TIGR00751 72 GLITPREVKTALITSVALGALSGLVLALLAA 102 (284)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4567788888888888899888888776555
No 114
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=26.10 E-value=2.2e+02 Score=27.19 Aligned_cols=52 Identities=21% Similarity=0.295 Sum_probs=30.3
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHh------hhHH-HHHHHHHHHHHHhhh
Q 024890 175 PVMYQNRVLSYGIAGAIVFRLSLI-LLGTATLQR------FEAV-NLVLAGILLFSSFKL 226 (261)
Q Consensus 175 P~~~Q~RvL~~GI~gAiv~RiIfI-~~G~~Ll~~------f~~I-~~ifG~fLLytgiK~ 226 (261)
++--|+|.+.+.+++++++=+.+. .+|++-..+ +.|+ +++.++++++-++..
T Consensus 191 ~~faRkR~i~f~llgllfliiaigltvGT~~~A~~~~giY~~wv~~~l~a~~~~~rs~yy 250 (256)
T PF09788_consen 191 PRFARKRAIIFFLLGLLFLIIAIGLTVGTWTYAKTYGGIYVSWVGLFLIALICLIRSIYY 250 (256)
T ss_pred chHhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCcEeHHHHHHHHHHHHHHHHhhee
Confidence 345689999999999886443333 345554432 3343 344455666555543
No 115
>PRK10489 enterobactin exporter EntS; Provisional
Probab=25.97 E-value=5.2e+02 Score=23.71 Aligned_cols=47 Identities=9% Similarity=-0.176 Sum_probs=24.2
Q ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHH
Q 024890 174 VPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQR--FEAVNLVLAGILL 220 (261)
Q Consensus 174 vP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~--f~~I~~ifG~fLL 220 (261)
+|+++|.|+.-+-..+.-+.-++-..++..+++. +.|..++.++..+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~ 187 (417)
T PRK10489 139 VGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTF 187 (417)
T ss_pred cCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6777676664333223334445555666666654 3455555544433
No 116
>PRK13592 ubiA prenyltransferase; Provisional
Probab=25.90 E-value=4.4e+02 Score=25.51 Aligned_cols=80 Identities=10% Similarity=0.124 Sum_probs=45.8
Q ss_pred chhhhhhhHHHHHHHHHHHHHHhHHHhhcChhhHHHHHHHHHHHHHhhhhhHHHHHHHhccCCCChh-----hhhHHHHH
Q 024890 111 RESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVM-----YQNRVLSY 185 (261)
Q Consensus 111 ~~s~keAl~wS~~wV~LAllFg~~i~~~~G~~~a~eFltgylLE~sLSvDNafVfa~If~~FkvP~~-----~Q~RvL~~ 185 (261)
..+.|.|.+-+.++..++++.+...++..|. + |. .++.+-++.......+.+|-|.+ ..+|-+.+
T Consensus 212 ~~G~kkA~~ia~~l~ii~v~~s~lp~~~~g~------~-g~---~~l~~~~~~~l~~~~~~lk~p~~~~~~~~~~~~~ki 281 (299)
T PRK13592 212 LFGYKKATRFIEVVTLLDILTNFALLWNISH------V-GV---VVLVLNVIWMTVQFEQFIKSPTRFNIRERVERYTYI 281 (299)
T ss_pred hccchhHHHHHHHHHHHHHHHhhHHHHHhhh------h-HH---HHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHH
Confidence 3456788888877777777776666652221 1 11 33334444444344444445633 56777888
Q ss_pred HHHHHHHHHHHHHHH
Q 024890 186 GIAGAIVFRLSLILL 200 (261)
Q Consensus 186 GI~gAiv~RiIfI~~ 200 (261)
|...|++.-++-++.
T Consensus 282 ~~~l~~la~~~~~~~ 296 (299)
T PRK13592 282 TETTMVLSVAVYLLM 296 (299)
T ss_pred HHHHHHHHHHHHHHh
Confidence 888777655544443
No 117
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=25.71 E-value=3.8e+02 Score=22.04 Aligned_cols=43 Identities=16% Similarity=0.242 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 024890 183 LSYGIAGAIVFRLSLIL-LGTATLQRFEAVNLVLAGILLFSSFKL 226 (261)
Q Consensus 183 L~~GI~gAiv~RiIfI~-~G~~Ll~~f~~I~~ifG~fLLytgiK~ 226 (261)
-.++.+.-..-|+++.+ +|+..+. ..+...+-|.+++..|+-.
T Consensus 59 ~~~~FL~~~~GRGlfyif~G~l~~~-~~~~~~i~g~~~~~~G~~~ 102 (136)
T PF08507_consen 59 KYFGFLYSYIGRGLFYIFLGTLCLG-QSILSIIIGLLLFLVGVIY 102 (136)
T ss_pred HhHhHHHhHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHH
Confidence 45666677788999865 5666665 4666666666666666543
No 118
>TIGR00245 conserved hypothetical protein TIGR00245.
Probab=25.06 E-value=4.8e+02 Score=24.25 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhhhhhHH
Q 024890 147 FFAGYILEQSLSVDNLF 163 (261)
Q Consensus 147 FltgylLE~sLSvDNaf 163 (261)
.+.||+++.+...||..
T Consensus 43 ~~vG~vL~~iF~~~~~~ 59 (248)
T TIGR00245 43 IIVGYVLLYIFSFDMPG 59 (248)
T ss_pred HHHHHHHHHHHcCCCHH
Confidence 67799999999999984
No 119
>PF00689 Cation_ATPase_C: Cation transporting ATPase, C-terminus; InterPro: IPR006068 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved C-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3A3Y_A 2ZXE_A 2XZB_A 3B9B_A 3N5K_A 3FPS_A 3B9R_A 1WPG_C 2AGV_A 2O9J_A ....
Probab=25.05 E-value=3.9e+02 Score=21.95 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 024890 179 QNRVLSYGIAGAIVFRLSLILL 200 (261)
Q Consensus 179 Q~RvL~~GI~gAiv~RiIfI~~ 200 (261)
++|.+.+++++++++=++++.+
T Consensus 124 ~N~~l~~~~~~~~~l~~~i~~~ 145 (182)
T PF00689_consen 124 SNKWLLIAILISIALQILIVYV 145 (182)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHS
T ss_pred ccchHHHHHHHHHHHHHHHhcc
Confidence 7899999999999888777765
No 120
>PF06900 DUF1270: Protein of unknown function (DUF1270); InterPro: IPR009682 This entry is represented by Bacteriophage 92, Orf86. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Staphylococcus aureus and phage proteins of 53 residues in length. The function of this family is unknown.
Probab=24.92 E-value=2.5e+02 Score=20.96 Aligned_cols=26 Identities=15% Similarity=0.060 Sum_probs=22.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHhHHHhh
Q 024890 113 SYTSSVKTVAFCVSTAVAFGLGVGFI 138 (261)
Q Consensus 113 s~keAl~wS~~wV~LAllFg~~i~~~ 138 (261)
+.|+.+.-.+.|+.++++...++|++
T Consensus 4 ~ykSylIA~l~ftvlsi~L~~~lYFT 29 (53)
T PF06900_consen 4 TYKSYLIANLCFTVLSIALMPFLYFT 29 (53)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999998887754
No 121
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=24.88 E-value=7e+02 Score=24.88 Aligned_cols=62 Identities=11% Similarity=0.098 Sum_probs=36.0
Q ss_pred HhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHh---hhHHHHHHHHHHH
Q 024890 156 SLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLIL-LGTATLQR---FEAVNLVLAGILL 220 (261)
Q Consensus 156 sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~-~G~~Ll~~---f~~I~~ifG~fLL 220 (261)
..+++--.+-.+..+. .|+++|.+.+-.=..|.. +-.++.. ++..|.+. ++++.|++|++-+
T Consensus 141 ~~g~~~pa~~~i~~~W--~P~~Ers~~~ail~~g~q-~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~ 206 (466)
T KOG2532|consen 141 GQGVLFPAIGSILAKW--APPNERSTFIAILTAGSQ-LGTIITMPVSGLLCESSLGWPSIFYVFGIVGL 206 (466)
T ss_pred HHhHHHhhhhceeeeE--CCHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHhccCCCCchHHHHHHHHHH
Confidence 4466666666777776 688776665544444442 2333333 45555554 4569998887543
No 122
>COG5249 RER1 Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]
Probab=24.57 E-value=1.6e+02 Score=26.37 Aligned_cols=42 Identities=17% Similarity=0.288 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhh
Q 024890 184 SYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFA 228 (261)
Q Consensus 184 ~~GI~gAiv~RiIfI~~G~~Ll~~f~~I~~ifG~fLLytgiK~~~ 228 (261)
.||+.|.+++ +.++-++....+--|.|-.|+||+=.-+-++.
T Consensus 36 RW~i~ggL~~---lf~iRI~~~~gwY~icY~LgiyLLn~flaFLT 77 (180)
T COG5249 36 RWGITGGLFL---LFCIRIWSTGGWYLICYCLGIYLLNAFLAFLT 77 (180)
T ss_pred hhhHHHHHHH---HHHHHHHhccchhhHHHHHHHHHHHHHHHHhC
Confidence 4666666531 12222333333333566777777765555444
No 123
>COG1173 DppC ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=24.21 E-value=5.9e+02 Score=23.97 Aligned_cols=86 Identities=17% Similarity=0.235 Sum_probs=48.8
Q ss_pred ccChhhhhhccch--hhhhhhHHHHHHHHHHHHHHhHHHhhcC--hhhHHHHHHHHHHHHHhhhhhHHHHHHHhccCCCC
Q 024890 100 TVDDAERQIEGRE--SYTSSVKTVAFCVSTAVAFGLGVGFIEG--ASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVP 175 (261)
Q Consensus 100 ~~~~~~~~~~~~~--s~keAl~wS~~wV~LAllFg~~i~~~~G--~~~a~eFltgylLE~sLSvDNafVfa~If~~FkvP 175 (261)
-.|+-+++.-.+. +.+.++.-+++-+++++++|..++...| +...-+.+.- ++|..+++-.+++..++...++
T Consensus 69 GTD~~GRDi~srli~G~r~SL~I~~~~~~~~~~iG~~lG~iaGy~gG~vD~ilmr-i~di~ls~P~lll~i~l~~~~g-- 145 (289)
T COG1173 69 GTDNLGRDILSRLLYGARISLLIGLLAVLISLVIGTLLGLLAGYFGGWVDRVLMR-ITDIFLAFPSLLLAILLVAILG-- 145 (289)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH-HHHHHHHccHHHHHHHHHHHHC--
Confidence 3454455544343 3456666666666666666666655433 1113333333 4899999999988887777654
Q ss_pred hhhhhHHHHHHHH
Q 024890 176 VMYQNRVLSYGIA 188 (261)
Q Consensus 176 ~~~Q~RvL~~GI~ 188 (261)
+..-.-++..|+.
T Consensus 146 ~~~~~iiial~i~ 158 (289)
T COG1173 146 PGLLNLILALALV 158 (289)
T ss_pred ccHHHHHHHHHHH
Confidence 3334444444443
No 124
>PRK03557 zinc transporter ZitB; Provisional
Probab=23.95 E-value=2.2e+02 Score=26.63 Aligned_cols=19 Identities=16% Similarity=0.487 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhhhhhc
Q 024890 211 VNLVLAGILLFSSFKLFAS 229 (261)
Q Consensus 211 I~~ifG~fLLytgiK~~~~ 229 (261)
.-++.++++++.+++++++
T Consensus 189 ~~ilis~~i~~~~~~l~~~ 207 (312)
T PRK03557 189 LSILVSVLVLRSAWRLLKE 207 (312)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5677789999999999887
No 125
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=23.56 E-value=3.4e+02 Score=20.76 Aligned_cols=59 Identities=17% Similarity=0.162 Sum_probs=38.1
Q ss_pred hhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhhh--HHHHHHHHHHH
Q 024890 159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIV-FRLSLILLGTATLQRFE--AVNLVLAGILL 220 (261)
Q Consensus 159 vDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv-~RiIfI~~G~~Ll~~f~--~I~~ifG~fLL 220 (261)
+|--....+.+.. +-| .+++..+.|...|++ +=.+-+.+|.++-++.+ ++.++.|+..+
T Consensus 14 GDKTQl~t~~La~-~~~--~~~~~V~~G~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~lFl 75 (78)
T PF01169_consen 14 GDKTQLATIALAA-RYP--RNPWPVFAGATLALALATGLAVLLGSWLASRIPERYIKWVAGALFL 75 (78)
T ss_pred CcHHHHHHHHHHh-cCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 4555555555442 112 367889999999985 66677788888866654 56776665544
No 126
>PF04024 PspC: PspC domain; InterPro: IPR007168 This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.
Probab=23.56 E-value=2e+02 Score=21.21 Aligned_cols=30 Identities=30% Similarity=0.476 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhccC
Q 024890 192 VFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEE 231 (261)
Q Consensus 192 v~RiIfI~~G~~Ll~~f~~I~~ifG~fLLytgiK~~~~~e 231 (261)
..|++|+++.. ..++.+++|...-++.+++
T Consensus 30 ~vRl~~v~l~~----------~~~~~~l~Y~~~w~~lP~~ 59 (61)
T PF04024_consen 30 LVRLIFVVLTF----------FTGGGILLYLILWLLLPKE 59 (61)
T ss_pred HHHHHHHHHHH----------HHhHHHHHHHHHHHHcCCC
Confidence 56666665433 2234667777666666544
No 127
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=23.28 E-value=7e+02 Score=24.26 Aligned_cols=50 Identities=18% Similarity=0.230 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhHHHhhcChhhHHHHHHHHHHHHHhhhhhHHHHHHHhc
Q 024890 121 VAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFK 170 (261)
Q Consensus 121 S~~wV~LAllFg~~i~~~~G~~~a~eFltgylLE~sLSvDNafVfa~If~ 170 (261)
+.=|++++++++...|...-....+.=.+|+.+|..+=.-=++....-..
T Consensus 148 ~lpwval~la~sf~~Ygl~RK~~~v~a~~g~~lE~l~l~p~al~yl~~l~ 197 (293)
T COG2962 148 SLPWVALALALSFGLYGLLRKKLKVDALTGLTLETLLLLPVALIYLLFLA 197 (293)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhcCCchHHhHHHHHHHHhHHHHHHHHHHh
Confidence 35588888888888887665555556677888887765555555444443
No 128
>PF03203 MerC: MerC mercury resistance protein
Probab=23.19 E-value=1.6e+02 Score=23.70 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=24.2
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------HHHHHHHHHHHHH
Q 024890 175 PVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFE------AVNLVLAGILLFS 222 (261)
Q Consensus 175 P~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f~------~I~~ifG~fLLyt 222 (261)
.+..|.+.+.+|.+|..++ +.+..+-+.+. ++.++|++.|+..
T Consensus 60 r~h~~~~~~~l~~~G~~ll-----~~~~~~~~~~~~~~~e~~lt~~G~~lLi~a 108 (116)
T PF03203_consen 60 RRHRRWLPLALGVIGLALL-----LLALFLGESYEGEHGETVLTYIGALLLIAA 108 (116)
T ss_pred hhccchHHHHHHHHHHHHH-----HHHHHhcchhcchhhhHHHHHHHHHHHHHH
Confidence 4444667777787776432 33333333333 5677777776654
No 129
>COG1269 NtpI Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]
Probab=22.96 E-value=2.4e+02 Score=29.57 Aligned_cols=58 Identities=21% Similarity=0.275 Sum_probs=33.7
Q ss_pred hhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 024890 160 DNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKL 226 (261)
Q Consensus 160 DNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f~~I~~ifG~fLLytgiK~ 226 (261)
.|+.+++..++. --+.+|.+....=+.-..-...++++++.|+..+.|++++..++++
T Consensus 456 ~~~m~~sl~iG~---------~hl~~G~~lg~~~~~~~~~~~~a~~~~~~w~~~~~G~~~~~~~~~~ 513 (660)
T COG1269 456 SNILILSLLIGV---------LHLSLGLLLGFINRVRSGDIKGAILPQLLWLLIILGLLLLILGYKW 513 (660)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHHHHHHhhcchHHHhhhhHHHHHHHHHHHHHHHHhhh
Confidence 455555555553 1244555544443333444455556677787788887777777655
No 130
>COG0428 Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism]
Probab=22.92 E-value=3.8e+02 Score=24.84 Aligned_cols=78 Identities=13% Similarity=0.098 Sum_probs=50.9
Q ss_pred HHHHHHHHhhhhhHH---HHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHH
Q 024890 149 AGYILEQSLSVDNLF---VFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFE-----AVNLVLAGILL 220 (261)
Q Consensus 149 tgylLE~sLSvDNaf---Vfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f~-----~I~~ifG~fLL 220 (261)
+|..+...+++.|+. +.+..+.. -..-+.|++.++.+.++.- .+...+|.+++..+. +.+.+.+..++
T Consensus 149 ~gi~~alaI~ihnipEG~av~~pL~~---~~~s~~~~l~~~~lsg~~~-~lgavig~~~~~~~~~~~l~~~la~aaG~mv 224 (266)
T COG0428 149 LGIALALAIAIHNIPEGLAVALPLAG---AGRSRLKALLVAVLSGLAE-PLGAVIGAYLLGISSPLVLPFALAFAAGAMV 224 (266)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHh---cCCchHHHHHHHHHHHhHH-HHHHHHHHHHHhhchHHHHHHHHHHHhhcch
Confidence 567788888888863 33333322 1244678899988877642 233444555555333 56777788999
Q ss_pred HHHhhhhhcc
Q 024890 221 FSSFKLFASE 230 (261)
Q Consensus 221 ytgiK~~~~~ 230 (261)
|..++++.++
T Consensus 225 ~v~~~eliPe 234 (266)
T COG0428 225 YVVVDELLPE 234 (266)
T ss_pred hhhHHHHhhH
Confidence 9999998775
No 131
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=22.89 E-value=5.8e+02 Score=23.21 Aligned_cols=58 Identities=12% Similarity=0.074 Sum_probs=28.6
Q ss_pred hhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHH
Q 024890 159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFE--AVNLVLAGI 218 (261)
Q Consensus 159 vDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f~--~I~~ifG~f 218 (261)
.......+.+.+. .|++.+.++.-+...+..+.-.+...++..+.+.+. |..++.++.
T Consensus 117 ~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~ 176 (406)
T PRK15402 117 FIGAVGYAAIQES--FEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAAL 176 (406)
T ss_pred hHHHHHHHHHHHH--hChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHH
Confidence 3444455555554 466666555433332333344455555666666433 455554443
No 132
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=22.82 E-value=82 Score=25.41 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=19.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024890 178 YQNRVLSYGIAGAIVFRLSLILLGTA 203 (261)
Q Consensus 178 ~Q~RvL~~GI~gAiv~RiIfI~~G~~ 203 (261)
.=.-+|.||+...-+|.+|+|++.+.
T Consensus 17 ~~e~llRYGLf~GAIFQliCilAiI~ 42 (85)
T PF06783_consen 17 FFENLLRYGLFVGAIFQLICILAIIL 42 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheee
Confidence 45678889998888888888775443
No 133
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=22.70 E-value=6.2e+02 Score=23.46 Aligned_cols=32 Identities=13% Similarity=0.009 Sum_probs=25.2
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHhHHHhhcC
Q 024890 109 EGRESYTSSVKTVAFCVSTAVAFGLGVGFIEG 140 (261)
Q Consensus 109 ~~~~s~keAl~wS~~wV~LAllFg~~i~~~~G 140 (261)
+.+++.|++.....+..++++++|+++.+..|
T Consensus 84 ~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~ 115 (296)
T PRK05951 84 AGIMTLGHLRVLGIALGAIALQLGWSLVLDRG 115 (296)
T ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35678899999999988999888887765544
No 134
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=22.66 E-value=5.7e+02 Score=23.00 Aligned_cols=35 Identities=3% Similarity=-0.178 Sum_probs=24.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhHHHhhcChhhHHH
Q 024890 112 ESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASE 146 (261)
Q Consensus 112 ~s~keAl~wS~~wV~LAllFg~~i~~~~G~~~a~e 146 (261)
+++|+-+.|.++++.+..++...+|++.......+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (356)
T PRK10755 2 ISLRRRLLLTIGLILLVFQLISVFWLWHESTEQIQ 36 (356)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 46899999998888877666666666554443333
No 135
>PRK10091 MFS transport protein AraJ; Provisional
Probab=22.47 E-value=5.9e+02 Score=23.14 Aligned_cols=44 Identities=25% Similarity=0.148 Sum_probs=18.6
Q ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHH
Q 024890 174 VPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFE--AVNLVLAG 217 (261)
Q Consensus 174 vP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f~--~I~~ifG~ 217 (261)
.|++.|.++.-+-..+..+.=.+...++..+.+.+. |..++.|+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~ 165 (382)
T PRK10091 120 IKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAV 165 (382)
T ss_pred CChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHH
Confidence 455555554322112222222333444555665433 34554444
No 136
>COG2155 Uncharacterized conserved protein [Function unknown]
Probab=22.40 E-value=96 Score=24.72 Aligned_cols=49 Identities=22% Similarity=0.367 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhhhHH-HHHHHHHHHHHHhhhhhcc
Q 024890 182 VLSYGIAGAIVFRLSLILLG-TATLQRFEAV-NLVLAGILLFSSFKLFASE 230 (261)
Q Consensus 182 vL~~GI~gAiv~RiIfI~~G-~~Ll~~f~~I-~~ifG~fLLytgiK~~~~~ 230 (261)
++.||++|-.-+-++-.++| ...+.+.-++ .-+-|++.++...|-..++
T Consensus 18 alNWGLvG~f~fdLvaalfG~gs~lsri~YiivGlagv~~il~l~k~~~~~ 68 (79)
T COG2155 18 ALNWGLVGLFGFDLVAALFGVGSMLTRIIYIIVGLAGVYQILPLFKVCEKK 68 (79)
T ss_pred hhhhceeeeehhhHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhcchhhcc
Confidence 46677777666666766666 3344444442 3334667766666655443
No 137
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=22.27 E-value=5.4e+02 Score=22.63 Aligned_cols=47 Identities=11% Similarity=-0.024 Sum_probs=25.3
Q ss_pred hhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024890 159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQR 207 (261)
Q Consensus 159 vDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~ 207 (261)
.......+++.+. .|+++|.++.-+--.+..+--++...++..+++.
T Consensus 116 ~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~ 162 (405)
T TIGR00891 116 GEYGSSAAYVIES--WPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPV 162 (405)
T ss_pred hhhHHHHHHHHHh--CChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455566664 5777776665543333334445555555556553
No 138
>PRK03893 putative sialic acid transporter; Provisional
Probab=22.19 E-value=6.5e+02 Score=23.51 Aligned_cols=48 Identities=8% Similarity=-0.000 Sum_probs=26.5
Q ss_pred hHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024890 161 NLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 210 (261)
Q Consensus 161 NafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f~~ 210 (261)
.....+++.+. .|+++|.++.-+-..+.-+...+...++..+++.+.|
T Consensus 126 ~~~~~~~~~~~--~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w 173 (496)
T PRK03893 126 YGSSATYVIES--WPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGW 173 (496)
T ss_pred HHHHHHHHHHH--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 33344455554 5777777765444444445555556666666664443
No 139
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=22.00 E-value=9.8e+02 Score=25.48 Aligned_cols=97 Identities=14% Similarity=0.112 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHHHhHHHhhcChhhHHHHHHHHHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHH
Q 024890 118 VKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSL 197 (261)
Q Consensus 118 l~wS~~wV~LAllFg~~i~~~~G~~~a~eFltgylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIf 197 (261)
..++.+=.+++++.+..+|+..|...+.....+. -|+..+|....-|...-++ .++|.+.|+..=.++
T Consensus 352 A~~~glRa~~ai~~~~~fWI~TgW~~Ga~a~~~a-----------AV~~~LfA~~~nP~~~~~~-fl~Gtl~a~~~a~l~ 419 (652)
T PRK10631 352 AMINGWRTTLATALGTLFWLWTGWTSGSGAMVMI-----------AVVTSLAMRLPNPRMVAID-FLYGTLAALPLGALY 419 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHH-----------HHHHHHHhCCCChHHHHHH-HHHHHHHHHHHHHHH
Confidence 3556666777777878888887766654444332 2445555554556543333 444555444443444
Q ss_pred HHHHHHHHH-hhhHHHHHHHHHHHHHHhhh
Q 024890 198 ILLGTATLQ-RFEAVNLVLAGILLFSSFKL 226 (261)
Q Consensus 198 I~~G~~Ll~-~f~~I~~ifG~fLLytgiK~ 226 (261)
.++-.--++ -|..+.+..+.++++.|..+
T Consensus 420 ~f~vLP~i~~~f~lL~laLap~~~~~g~~~ 449 (652)
T PRK10631 420 FMVIIPNTQQSMLLLCISLGVLGFFIGIEV 449 (652)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHh
Confidence 333333332 24444455555555544433
No 140
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=21.74 E-value=5.1e+02 Score=22.14 Aligned_cols=37 Identities=16% Similarity=0.285 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHhhhhhcc
Q 024890 194 RLSLILLGTATLQRFE--AVNLVLAGILLFSSFKLFASE 230 (261)
Q Consensus 194 RiIfI~~G~~Ll~~f~--~I~~ifG~fLLytgiK~~~~~ 230 (261)
-++...+|++++...+ ++..++|++++..+++++.++
T Consensus 73 ~~~g~~iG~~l~~~l~~~~l~~~~~~~ll~~~~~~~~~~ 111 (240)
T PF01925_consen 73 ALIGVVIGAWLLSLLPDDILKLIFGLFLLLLAIYMLLKK 111 (240)
T ss_pred hHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3345566888876554 678999999999999997754
No 141
>TIGR00895 2A0115 benzoate transport.
Probab=21.46 E-value=5.5e+02 Score=22.39 Aligned_cols=51 Identities=12% Similarity=0.007 Sum_probs=25.8
Q ss_pred hhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024890 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 210 (261)
Q Consensus 158 SvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f~~ 210 (261)
+.-.....+++.+. .|+++|.++.-+-..+..+.-++...++..+++.+.|
T Consensus 120 ~~~~~~~~~~~~~~--~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~ 170 (398)
T TIGR00895 120 GGLMPNLNALVSEY--APKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGW 170 (398)
T ss_pred ccchhhHHHHHHHH--cCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccc
Confidence 44444555566664 5776666555443333333444445555566654433
No 142
>PRK09917 hypothetical protein; Provisional
Probab=21.17 E-value=4.3e+02 Score=22.85 Aligned_cols=48 Identities=25% Similarity=0.377 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHH--HHHHHHH
Q 024890 145 SEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI--VFRLSLI 198 (261)
Q Consensus 145 ~eFltgylLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAi--v~RiIfI 198 (261)
++++...+.|...+.==.+-|+++|+ +|+ |....-|+.||+ ..|.++.
T Consensus 4 ~~~~~~~l~~~~~a~ia~~gFailfn---~P~---r~l~~~~i~G~vgw~vy~~~~ 53 (157)
T PRK09917 4 IEFLLALAQDMILAAIPAVGFAMVFN---VPV---RALRWCALLGAIGHGSRMLMM 53 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC---CcH---HHHHHHHHHHHHHHHHHHHHH
Confidence 35555678888888888888999987 676 356666777777 3666544
No 143
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=21.17 E-value=4.2e+02 Score=20.96 Aligned_cols=58 Identities=16% Similarity=0.166 Sum_probs=33.5
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----HHHHHHHHHHHHHhhhhhccCC
Q 024890 175 PVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA----VNLVLAGILLFSSFKLFASEED 232 (261)
Q Consensus 175 P~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f~~----I~~ifG~fLLytgiK~~~~~ee 232 (261)
-.++|+-.+..|++.|.+.=.-.......-+++.+- ..++|=.+..|-+++.+..+++
T Consensus 12 ~~~~~~~~~~~~~ii~~iv~l~v~~~vl~aIn~iPll~~llElvGlgyt~wF~~ryLL~~~~ 73 (90)
T PF14159_consen 12 FDKYKRPLLTIGAIIAVIVALWVSAAVLDAINSIPLLPGLLELVGLGYTGWFVYRYLLFAEN 73 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHhHHHHHHHcChHh
Confidence 345666667777655554333333333344555443 4666666888888887665443
No 144
>COG5436 Predicted integral membrane protein [Function unknown]
Probab=21.06 E-value=2e+02 Score=25.98 Aligned_cols=37 Identities=16% Similarity=0.269 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024890 180 NRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLA 216 (261)
Q Consensus 180 ~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f~~I~~ifG 216 (261)
.+++..|++||++.-++++++-=.++.+..|.-..+|
T Consensus 4 ~~ailvglvgA~i~HIv~vl~lP~f~~rdaytr~s~~ 40 (182)
T COG5436 4 RKAILVGLVGAIIAHIVFVLFLPKFIMRDAYTRTSAG 40 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHhhhh
Confidence 4788999999999999999988888887777666655
No 145
>PRK01030 tetrahydromethanopterin S-methyltransferase subunit C; Provisional
Probab=20.72 E-value=3.4e+02 Score=26.01 Aligned_cols=55 Identities=15% Similarity=0.205 Sum_probs=38.2
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHhhhhhc
Q 024890 175 PVMYQNRVLSYGIAGAIVFRLSLILLGTATLQR-FEAVNLVLAGILLFSSFKLFAS 229 (261)
Q Consensus 175 P~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~-f~~I~~ifG~fLLytgiK~~~~ 229 (261)
|.|.|+|-|..++--+.+.=+++-++....... -+++..+-|++.=+.+++.+.+
T Consensus 188 P~E~q~RTL~la~e~G~ls~ii~gi~s~~~~~~~~~~i~iivg~i~W~~~y~~y~~ 243 (264)
T PRK01030 188 PNESQDRTLTLAVECGFLSMIIFGIASLAFLGLAAAIISIIVGLIGWYYAYVKFVK 243 (264)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999887776655555544433332 2556777788777777776643
No 146
>COG3329 Predicted permease [General function prediction only]
Probab=20.67 E-value=3.1e+02 Score=27.32 Aligned_cols=113 Identities=17% Similarity=0.175 Sum_probs=56.1
Q ss_pred cccccCCCccCCCCccccccCCCCCCCCCCCCCCCcccChhhhhhccchhhhhhhHHHHHHHHHHHHHHhHHHhhcChh-
Q 024890 64 LACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAERQIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGAS- 142 (261)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~keAl~wS~~wV~LAllFg~~i~~~~G~~- 142 (261)
.|.....+|+|-.|.-++.+++++..||. -+. .+-.+|++........ +-|+.+++..|.+
T Consensus 176 vA~~e~g~~~d~~ssr~~~~~~~~~ed~~------------v~~---~ell~Esflnpal~ll---lggl~iGlitGe~g 237 (372)
T COG3329 176 VAAGEYGDQTDLASSRQEYLSPQWGEDNR------------VKI---WELLQESFLNPALVLL---LGGLAIGLITGEQG 237 (372)
T ss_pred hhhcccCchhhhhhhhhhhcccccCcccc------------hhh---HHHHHHHHcCchHHHH---HHHHHHhheeccCc
Confidence 55556666666666566666666666652 111 2235778877765443 3355566666532
Q ss_pred -hHHHHHHHHHHHHHhhhhhHHHHHHHhccCCCChh--hhhHHHHHHHHHHHHHHHH
Q 024890 143 -KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVM--YQNRVLSYGIAGAIVFRLS 196 (261)
Q Consensus 143 -~a~eFltgylLE~sLSvDNafVfa~If~~FkvP~~--~Q~RvL~~GI~gAiv~RiI 196 (261)
.-.+=|+.-+-+.+|++==+ .+.|-... |+++- .-+..+++|++.=++.-.+
T Consensus 238 ~~vl~~F~~~lFqGvL~lflL-~MGm~A~r-rl~elrk~g~~~v~fgllaPil~g~i 292 (372)
T COG3329 238 ESVLKPFFDPLFQGVLCLFLL-DMGMTAGR-RLKELRKVGQGLVLFGLLAPILHGFI 292 (372)
T ss_pred hhhhhhhhHHHHHHHHHHHHH-HHhHHHHH-HHHHHHhcCcceehHHHHHHHHHHHH
Confidence 23333334444555543211 23333332 45532 2234556666655554443
No 147
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=20.41 E-value=9e+02 Score=24.45 Aligned_cols=50 Identities=24% Similarity=0.065 Sum_probs=26.3
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHH
Q 024890 173 KVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFE--AVNLVLAGILLFS 222 (261)
Q Consensus 173 kvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f~--~I~~ifG~fLLyt 222 (261)
.+|++.|-|++-.-.......-.+-.+++-.+.+.+. ..+.+.|+.++..
T Consensus 335 ~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~ 386 (524)
T PF05977_consen 335 SVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLS 386 (524)
T ss_pred hCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 5899999998755433333333343344444555432 3444445444333
Done!