Query 024890
Match_columns 261
No_of_seqs 194 out of 1215
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 16:13:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024890.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024890hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 68.6 55 0.0019 27.9 12.6 51 157-209 133-183 (451)
2 4aps_A DI-OR tripeptide H+ sym 60.2 88 0.003 27.3 14.7 54 155-210 120-175 (491)
3 2gfp_A EMRD, multidrug resista 50.5 86 0.0029 26.3 8.8 65 158-224 103-169 (375)
4 3o7q_A L-fucose-proton symport 37.4 1.9E+02 0.0065 24.5 14.1 49 155-205 129-177 (438)
5 1pw4_A Glycerol-3-phosphate tr 32.8 2.3E+02 0.0078 24.0 13.8 55 161-217 364-421 (451)
6 3aqp_A Probable secdf protein- 17.8 7.4E+02 0.025 24.7 12.2 26 145-170 621-646 (741)
7 3ixz_A Potassium-transporting 14.1 1E+03 0.035 24.5 11.0 23 178-200 960-982 (1034)
8 2ls4_A High affinity copper up 18.3 38 0.0013 20.8 0.0 16 123-138 3-18 (26)
9 3o7q_A L-fucose-proton symport 12.1 6.4E+02 0.022 21.1 12.9 60 158-221 362-424 (438)
10 3dl8_C SECE; RECA-type ATPase 11.5 3.9E+02 0.013 18.7 4.8 25 114-138 23-47 (65)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=68.57 E-value=55 Score=27.92 Aligned_cols=51 Identities=10% Similarity=-0.170 Sum_probs=30.6
Q ss_pred hhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024890 157 LSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFE 209 (261)
Q Consensus 157 LSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f~ 209 (261)
.+.-.....+++.+. .|+++|.++.-+--.+.-+.-++...++..+++.+.
T Consensus 133 ~~~~~~~~~~~i~~~--~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 183 (451)
T 1pw4_A 133 QGMGWPPCGRTMVHW--WSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN 183 (451)
T ss_dssp HHHTHHHHHHHHHTT--CTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC
T ss_pred hhhccchHHHHHHHH--CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444555666777775 577666665544333444555666677777776554
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=60.22 E-value=88 Score=27.34 Aligned_cols=54 Identities=13% Similarity=-0.066 Sum_probs=33.2
Q ss_pred HHhhhhhHHHHHHHhccCCCChhhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhH
Q 024890 155 QSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGI--AGAIVFRLSLILLGTATLQRFEA 210 (261)
Q Consensus 155 ~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI--~gAiv~RiIfI~~G~~Ll~~f~~ 210 (261)
...+..+....+++.+. .|++.|+|....|+ .+.-+.-++-..++..+.+.+.|
T Consensus 120 ~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~ 175 (491)
T 4aps_A 120 IGTGFLKPNVSTLVGTL--YDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGY 175 (491)
T ss_dssp HHHHHHHHHHHHHHHHH--SSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHhccchHHHHHHHH--cCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 33445555666666665 57777777777776 33335556666777777765544
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=50.46 E-value=86 Score=26.28 Aligned_cols=65 Identities=17% Similarity=0.023 Sum_probs=34.2
Q ss_pred hhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHh
Q 024890 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA--VNLVLAGILLFSSF 224 (261)
Q Consensus 158 SvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f~~--I~~ifG~fLLytgi 224 (261)
+.-+....+.+.+. .|+++|.++.-+--.+.-+.-++...++..+.+.+.| ..++.++..+..++
T Consensus 103 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 103 GVGGVMARTLPRDL--YERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHH--HHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhhhhHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 33444445555553 3556566655444344445566666777777765444 45555554444333
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=37.40 E-value=1.9e+02 Score=24.50 Aligned_cols=49 Identities=8% Similarity=-0.029 Sum_probs=29.5
Q ss_pred HHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024890 155 QSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATL 205 (261)
Q Consensus 155 ~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll 205 (261)
...+.-.....+++.+. .|+++|.++.-+--.+.-+-.++...++..+.
T Consensus 129 ~~~~~~~~~~~~~~~~~--~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 129 AGLGCLETAANPFVTVL--GPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHHHHHHS--SCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred hhHHHhhhhHHHHHHHH--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555666677665 58777777654444444455666666666666
No 5
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=32.81 E-value=2.3e+02 Score=24.04 Aligned_cols=55 Identities=7% Similarity=0.038 Sum_probs=28.4
Q ss_pred hHHHHHHHhccCCCChhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHh--hhHHHHHHHH
Q 024890 161 NLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIV-FRLSLILLGTATLQR--FEAVNLVLAG 217 (261)
Q Consensus 161 NafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv-~RiIfI~~G~~Ll~~--f~~I~~ifG~ 217 (261)
+.....++.+. .|++.|-++.-+-.....+ ..++...++..+.+. +.+..++.++
T Consensus 364 ~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~ 421 (451)
T 1pw4_A 364 VMLIGLHALEL--APKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIG 421 (451)
T ss_dssp HHHHHHHHHHT--SCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHH--hchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 33333445453 6766555544333333334 667777777777775 3344444443
No 6
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=17.78 E-value=7.4e+02 Score=24.67 Aligned_cols=26 Identities=12% Similarity=0.073 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHhc
Q 024890 145 SEFFAGYILEQSLSVDNLFVFVLIFK 170 (261)
Q Consensus 145 ~eFltgylLE~sLSvDNafVfa~If~ 170 (261)
...+.+.++=.-+|+||.+++.--++
T Consensus 621 ~~~i~~~l~liGisvd~~I~l~~r~r 646 (741)
T 3aqp_A 621 IPTIAALLTIVGYSINDSIVVSDRIR 646 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcceEEehHHHH
Confidence 33445555557789999988775543
No 7
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=14.09 E-value=1e+03 Score=24.54 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=18.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 024890 178 YQNRVLSYGIAGAIVFRLSLILL 200 (261)
Q Consensus 178 ~Q~RvL~~GI~gAiv~RiIfI~~ 200 (261)
.+++.+.+++++.+++-++++.+
T Consensus 960 ~~N~~l~~~~~~~~~l~~~~~~~ 982 (1034)
T 3ixz_A 960 FRNRILVIAIVFQVCIGCFLCYC 982 (1034)
T ss_pred cccHHHHHHHHHHHHHHHHHHHh
Confidence 57889999999998887776644
No 8
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=18.28 E-value=38 Score=20.77 Aligned_cols=16 Identities=38% Similarity=0.546 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhHHHhh
Q 024890 123 FCVSTAVAFGLGVGFI 138 (261)
Q Consensus 123 ~wV~LAllFg~~i~~~ 138 (261)
.|+.+|++.|..++++
T Consensus 3 g~l~iavvlGa~~Gyf 18 (26)
T 2ls4_A 3 GYLCIAVAAGAGTGYF 18 (26)
Confidence 4888999988888765
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=12.10 E-value=6.4e+02 Score=21.14 Aligned_cols=60 Identities=13% Similarity=-0.043 Sum_probs=33.6
Q ss_pred hhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHH
Q 024890 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFE---AVNLVLAGILLF 221 (261)
Q Consensus 158 SvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Ll~~f~---~I~~ifG~fLLy 221 (261)
+.=+....+++.+. .|++ +.++.-+.. .+.+..++...+...+.+.+. +..++.++.++.
T Consensus 362 ~~~~~~~~~~~~~~--~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 424 (438)
T 3o7q_A 362 SIQYPTIFSLGIKN--LGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAV 424 (438)
T ss_dssp TTHHHHHHHHHHSS--CGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh--cccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 33344455555664 6765 666666665 344667777777777777533 344444433333
No 10
>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=11.55 E-value=3.9e+02 Score=18.65 Aligned_cols=25 Identities=16% Similarity=0.135 Sum_probs=16.3
Q ss_pred hhhhhHHHHHHHHHHHHHHhHHHhh
Q 024890 114 YTSSVKTVAFCVSTAVAFGLGVGFI 138 (261)
Q Consensus 114 ~keAl~wS~~wV~LAllFg~~i~~~ 138 (261)
-+|....+..-+...+++++++|..
T Consensus 23 r~e~~~~T~vViv~v~i~~~~i~~v 47 (65)
T 3dl8_C 23 RELVVKATISVIIFSLAIGVYLWIL 47 (65)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888888887743
Done!