Query 024890
Match_columns 261
No_of_seqs 194 out of 1215
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 16:13:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024890.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024890hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 40.8 75 0.0055 24.6 11.9 47 158-208 358-407 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 36.9 76 0.0055 23.6 12.9 68 152-221 321-391 (417)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 25.6 1.4E+02 0.01 23.0 13.7 31 152-184 125-155 (447)
4 d2axtl1 f.23.31.1 (L:1-37) Pho 15.0 63 0.0046 19.8 2.8 23 173-195 7-29 (37)
5 d1iwga8 f.35.1.1 (A:513-566,A: 8.3 3.2E+02 0.023 20.8 6.0 37 134-170 100-136 (222)
6 d1iyjb3 b.40.4.3 (B:2599-2731) 7.4 96 0.007 23.4 2.1 36 10-46 95-131 (133)
7 d1ymga1 f.19.1.1 (A:6-239) Aqu 6.1 5.4E+02 0.039 19.5 9.7 25 146-170 121-145 (234)
8 d3ehbb2 f.17.2.1 (B:1-107) Bac 4.9 3.6E+02 0.026 18.5 4.0 34 218-251 52-86 (107)
9 d3dtub2 f.17.2.1 (B:30-129) Ba 4.8 3.9E+02 0.028 17.9 4.2 34 218-251 46-80 (100)
10 d1be3k_ f.23.15.1 (K:) Subunit 4.8 2.4E+02 0.018 15.6 2.3 18 176-193 1-18 (26)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=40.79 E-value=75 Score=24.64 Aligned_cols=47 Identities=11% Similarity=0.052 Sum_probs=21.4
Q ss_pred hhhhHHHHHHHhccCCCChhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHhh
Q 024890 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI---VFRLSLILLGTATLQRF 208 (261)
Q Consensus 158 SvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gAi---v~RiIfI~~G~~Ll~~f 208 (261)
+.-+......+... .|++.|-++ .|+...+ .--++...++..+.+.+
T Consensus 358 ~~~~~~~~~~~~~~--~p~~~~g~~--~g~~~~~~~~~g~~~~~~~~g~~~~~~ 407 (447)
T d1pw4a_ 358 YGPVMLIGLHALEL--APKKAAGTA--AGFTGLFGYLGGSVAASAIVGYTVDFF 407 (447)
T ss_dssp THHHHHHHHHHHHT--SCTTHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHH--cCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444443 576655443 4443222 22233344555666644
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=36.89 E-value=76 Score=23.57 Aligned_cols=68 Identities=12% Similarity=0.013 Sum_probs=36.3
Q ss_pred HHHHHhhhhhHHHHHHHhccCCCChhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHH
Q 024890 152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGA-IVFRLSLILLGTATLQRFE--AVNLVLAGILLF 221 (261)
Q Consensus 152 lLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~~GI~gA-iv~RiIfI~~G~~Ll~~f~--~I~~ifG~fLLy 221 (261)
+.-...+.-+......+.+. .|++.|-++.-.....+ -+..++...++.++.+.+. +..++.|++.+.
T Consensus 321 l~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~ 391 (417)
T d1pv7a_ 321 LHMFEVPFLLVGCFKYITSQ--FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALG 391 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--SCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 33344455556666666664 78876665543222112 2345566666777777653 455555544443
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=25.61 E-value=1.4e+02 Score=23.00 Aligned_cols=31 Identities=3% Similarity=-0.160 Sum_probs=17.8
Q ss_pred HHHHHhhhhhHHHHHHHhccCCCChhhhhHHHH
Q 024890 152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLS 184 (261)
Q Consensus 152 lLE~sLSvDNafVfa~If~~FkvP~~~Q~RvL~ 184 (261)
+.-...++-.....+++... .|+++|.++.-
T Consensus 125 ~~g~~~~~~~~~~~~~i~~~--~~~~~r~~~~~ 155 (447)
T d1pw4a_ 125 LCGWFQGMGWPPCGRTMVHW--WSQKERGGIVS 155 (447)
T ss_dssp HHHHHHHHTHHHHHHHHHTT--CTTTHHHHHHH
T ss_pred HHHHhhhhhhhHHHHHHHHH--HHhhccccccc
Confidence 33333445555666677775 67776666543
No 4
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=14.99 E-value=63 Score=19.82 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=16.3
Q ss_pred CCChhhhhHHHHHHHHHHHHHHH
Q 024890 173 KVPVMYQNRVLSYGIAGAIVFRL 195 (261)
Q Consensus 173 kvP~~~Q~RvL~~GI~gAiv~Ri 195 (261)
+.|-+.-+..|+||++.-.++-+
T Consensus 7 ~q~veLNrtsLy~GlLlifvl~v 29 (37)
T d2axtl1 7 RQPVELNRTSLYLGLLLILVLAL 29 (37)
T ss_dssp CCCBCCCHHHHHHHHHHHHHHHH
T ss_pred CCccccchhhHHHHHHHHHHHHH
Confidence 45777788889999876554433
No 5
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=8.34 E-value=3.2e+02 Score=20.76 Aligned_cols=37 Identities=22% Similarity=0.234 Sum_probs=25.7
Q ss_pred HHHhhcChhhHHHHHHHHHHHHHhhhhhHHHHHHHhc
Q 024890 134 GVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFK 170 (261)
Q Consensus 134 ~i~~~~G~~~a~eFltgylLE~sLSvDNafVfa~If~ 170 (261)
+.-+..|.+....-..|.++=.-+.+||.+++.--.+
T Consensus 100 ~~l~~~g~~~~~~~~~g~i~l~Gi~v~~~i~~~~~~~ 136 (222)
T d1iwga8 100 LAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAK 136 (222)
T ss_dssp HHHHHTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCchhhhhcccccchhhhhhhHHHHHHHHhc
Confidence 3334455555555566778888899999999887554
No 6
>d1iyjb3 b.40.4.3 (B:2599-2731) OB-fold domains of BRCA2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=7.40 E-value=96 Score=23.36 Aligned_cols=36 Identities=28% Similarity=0.366 Sum_probs=25.9
Q ss_pred CccCCCcc-cceeEEeccCCcccCCCccccccccCCCC
Q 024890 10 GVQAPHKF-DSLLLRFSPTSTSQVPKLTSLLHFCNSQA 46 (261)
Q Consensus 10 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (261)
+--.|+.- |++.|+++ .+++.+-.|.++|-|+.-+.
T Consensus 95 ~~~sPLE~~~s~~L~i~-~Nstr~a~w~~kLGf~~~p~ 131 (133)
T d1iyjb3 95 DACAPLEAPDSLRLKIS-ANSTRPARWHSKLGFFHDPR 131 (133)
T ss_dssp SCCCGGGCCSSCEEECC-TTTEEECCSSSCSEECSCCS
T ss_pred CCcCcccccCccEEEEe-ecceeeccccccCcccCCCC
Confidence 44456655 78889887 55556667999999987543
No 7
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.10 E-value=5.4e+02 Score=19.53 Aligned_cols=25 Identities=12% Similarity=0.162 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHhc
Q 024890 146 EFFAGYILEQSLSVDNLFVFVLIFK 170 (261)
Q Consensus 146 eFltgylLE~sLSvDNafVfa~If~ 170 (261)
....+.+.|.....==++++..+..
T Consensus 121 ~~~~~~~~E~~~t~~lv~~i~~~~~ 145 (234)
T d1ymga1 121 SVGQATIVEIFLTLQFVLCIFATYD 145 (234)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHHhheeeec
Confidence 3556677888876544444444443
No 8
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=4.87 E-value=3.6e+02 Score=18.48 Aligned_cols=34 Identities=15% Similarity=0.275 Sum_probs=21.3
Q ss_pred HHHHHHhhhhhccC-CCCCCCccHHHHHhhhcccc
Q 024890 218 ILLFSSFKLFASEE-DDTDLSDNFIVKTCQRFIPV 251 (261)
Q Consensus 218 fLLytgiK~~~~~e-ee~d~~~n~ivr~irk~lPv 251 (261)
.++|..+|+-+.++ ...+..+|.....++-++|+
T Consensus 52 ~~~~~~~~~r~~~~~~~~~~~~n~~lEi~WTviP~ 86 (107)
T d3ehbb2 52 LLLICIVRFNRRANPVPARFTHNTPIEVIWTLVPV 86 (107)
T ss_dssp HHHHHHHHSBTTTSSSCCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHhhhhhccCCccccccccchHHHHHHHHHHH
Confidence 56666666644433 23345678888888887774
No 9
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.84 E-value=3.9e+02 Score=17.93 Aligned_cols=34 Identities=9% Similarity=0.387 Sum_probs=20.5
Q ss_pred HHHHHHhhhhhccCCC-CCCCccHHHHHhhhcccc
Q 024890 218 ILLFSSFKLFASEEDD-TDLSDNFIVKTCQRFIPV 251 (261)
Q Consensus 218 fLLytgiK~~~~~eee-~d~~~n~ivr~irk~lPv 251 (261)
.++|..+|.-+.+++. .+.+.|.....++-.+|+
T Consensus 46 ~l~~~~~~~r~~~~~~~~~~~~n~~LEiiWTviP~ 80 (100)
T d3dtub2 46 LILYAVWRFHEKRNKVPARFTHNSPLEIAWTIVPI 80 (100)
T ss_dssp HHHHHHHHHBTTTCCSCCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHhhhhhccCCCCCccccCcchHHHHHHHHHH
Confidence 4556666654444322 345677778888877774
No 10
>d1be3k_ f.23.15.1 (K:) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.83 E-value=2.4e+02 Score=15.65 Aligned_cols=18 Identities=17% Similarity=0.270 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 024890 176 VMYQNRVLSYGIAGAIVF 193 (261)
Q Consensus 176 ~~~Q~RvL~~GI~gAiv~ 193 (261)
+.+-+.+-+||-.||+.+
T Consensus 1 rnwvptaqlwgavgavgl 18 (26)
T d1be3k_ 1 RNWVPTAQLWGAVGAVGL 18 (26)
T ss_dssp CTHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHhhhcceeE
Done!