Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>024891
MGCCGEQNDAEEELQNHLLSSSSSSASSFTDPSTVISPMNSHFSALACPDTLRLILSNLS
VTDLARASCVCRAWSSVASDNNMIVLAFMAPWKLKEVVGMPLNGSFWRDNGIGKFAISHR
LARGDTVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPISSPELLIDGICYIEFDT
YAKREVAVLYLEGAPEKKPSCLLNRVTSVHGRRRIINSLRRSMQVDDETAQYYLSISNGN
LRAALSEFSADLEWERQGALA

High Scoring Gene Products

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  024891
        (261 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2011020 - symbol:AT1G55000 "AT1G55000" species...   698  8.0e-69   1


>TAIR|locus:2011020 [details] [associations]
            symbol:AT1G55000 "AT1G55000" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0016998
            "cell wall macromolecule catabolic process" evidence=IEA;ISS]
            InterPro:IPR001810 InterPro:IPR002482 InterPro:IPR018392
            Pfam:PF01476 PROSITE:PS50181 SMART:SM00257 UniPathway:UPA00143
            EMBL:CP002684 GenomeReviews:CT485782_GR SUPFAM:SSF81383
            GO:GO:0016567 EMBL:AC064840 EMBL:AC069144 GO:GO:0016998
            EMBL:AF424604 EMBL:AY124829 EMBL:AK316995 EMBL:AK317053
            EMBL:AY087755 IPI:IPI00526206 PIR:E96591 RefSeq:NP_001031192.1
            RefSeq:NP_001031193.1 RefSeq:NP_564673.1 UniGene:At.16087
            ProteinModelPortal:Q9FZ32 SMR:Q9FZ32 IntAct:Q9FZ32 STRING:Q9FZ32
            PRIDE:Q9FZ32 EnsemblPlants:AT1G55000.1 EnsemblPlants:AT1G55000.2
            EnsemblPlants:AT1G55000.3 GeneID:841942 KEGG:ath:AT1G55000
            TAIR:At1g55000 eggNOG:NOG260418 HOGENOM:HOG000029585
            InParanoid:Q9FZ32 OMA:MSDHGIY PhylomeDB:Q9FZ32
            ProtClustDB:CLSN2688813 Genevestigator:Q9FZ32 Uniprot:Q9FZ32
        Length = 221

 Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
 Identities = 138/219 (63%), Positives = 169/219 (77%)

Query:    45 ALACPDTLRLILSNLSVTDLARASCVCRAWSSVASDNNMIVLAFMAPWKLKEVVGMPLNG 104
             AL C DTL +I   L+V DLARASCVC+ W+SVA++++++V AF APW++KE+VG P + 
Sbjct:     2 ALYCRDTLIIIFQKLTVADLARASCVCKVWNSVATEDDLVVSAFTAPWRIKELVGRPASV 61

Query:   105 SFWRDNGIGKFAISHRLARGDTVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERXXXXXX 164
             SFWRDNGI KFAISHR+ RGD+V SLAVKY+VQVMDIKRLNNMMSDHGIYSR+R      
Sbjct:    62 SFWRDNGIWKFAISHRICRGDSVTSLAVKYAVQVMDIKRLNNMMSDHGIYSRDRLLIPIS 121

Query:   165 XXXXXXDGICYIEFDTYAKREVAVLYLEGAPEKK-PSCLLNRVT--SVHGRRRIINSLRR 221
                   +  CY+E D YAKREVAVLYLEGAP+++ P    N+ +  S  G+RR+I SLRR
Sbjct:   122 NPEILANTTCYVELDKYAKREVAVLYLEGAPKREQPVPGTNQQSNLSADGKRRLIESLRR 181

Query:   222 SMQVDDETAQYYLSISNGNLRAALSEFSADLEWERQGAL 260
             SMQVDD TA YYL+I+ G+ R+ALSEFSADL WERQ  L
Sbjct:   182 SMQVDDGTALYYLAIAEGDPRSALSEFSADLRWERQAGL 220


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.133   0.397    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      261       240   0.00093  113 3  11 22  0.40    33
                                                     32  0.44    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  615 (65 KB)
  Total size of DFA:  196 KB (2111 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.34u 0.12s 17.46t   Elapsed:  00:00:00
  Total cpu time:  17.34u 0.12s 17.46t   Elapsed:  00:00:00
  Start:  Sat May 11 06:05:25 2013   End:  Sat May 11 06:05:25 2013

Back to top