BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024891
(261 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FZ32|FB60_ARATH F-box protein At1g55000 OS=Arabidopsis thaliana GN=At1g55000 PE=1
SV=1
Length = 221
Score = 306 bits (783), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 146/219 (66%), Positives = 177/219 (80%), Gaps = 3/219 (1%)
Query: 45 ALACPDTLRLILSNLSVTDLARASCVCRAWSSVASDNNMIVLAFMAPWKLKEVVGMPLNG 104
AL C DTL +I L+V DLARASCVC+ W+SVA++++++V AF APW++KE+VG P +
Sbjct: 2 ALYCRDTLIIIFQKLTVADLARASCVCKVWNSVATEDDLVVSAFTAPWRIKELVGRPASV 61
Query: 105 SFWRDNGIGKFAISHRLARGDTVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPIS 164
SFWRDNGI KFAISHR+ RGD+V SLAVKY+VQVMDIKRLNNMMSDHGIYSR+RLLIPIS
Sbjct: 62 SFWRDNGIWKFAISHRICRGDSVTSLAVKYAVQVMDIKRLNNMMSDHGIYSRDRLLIPIS 121
Query: 165 SPELLIDGICYIEFDTYAKREVAVLYLEGAPEKK---PSCLLNRVTSVHGRRRIINSLRR 221
+PE+L + CY+E D YAKREVAVLYLEGAP+++ P S G+RR+I SLRR
Sbjct: 122 NPEILANTTCYVELDKYAKREVAVLYLEGAPKREQPVPGTNQQSNLSADGKRRLIESLRR 181
Query: 222 SMQVDDETAQYYLSISNGNLRAALSEFSADLEWERQGAL 260
SMQVDD TA YYL+I+ G+ R+ALSEFSADL WERQ L
Sbjct: 182 SMQVDDGTALYYLAIAEGDPRSALSEFSADLRWERQAGL 220
>sp|A0JNI1|LYSM1_BOVIN LysM and putative peptidoglycan-binding domain-containing protein 1
OS=Bos taurus GN=LYSMD1 PE=2 SV=1
Length = 225
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 117 ISHRLARGDTVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPI-SSPELLIDGI 173
+ H+LA GDT+A LA+KY V + IKR N + ++ I+ ++ L IPI + P L +G+
Sbjct: 40 LEHQLAPGDTLAGLALKYGVTMEQIKRANRLYTNDSIFLKKTLHIPILTEPRDLFNGL 97
>sp|Q9D0E3|LYSM1_MOUSE LysM and putative peptidoglycan-binding domain-containing protein 1
OS=Mus musculus GN=Lysmd1 PE=1 SV=1
Length = 226
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 117 ISHRLARGDTVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPI-SSPELLIDGI 173
+ H+L GDT+A LA+KY V + IKR N + ++ I+ ++ L IPI S P L +G+
Sbjct: 40 LEHQLEPGDTLAGLALKYGVTMEQIKRTNRLYTNDSIFLKKTLYIPILSEPRDLFNGL 97
>sp|Q96S90|LYSM1_HUMAN LysM and putative peptidoglycan-binding domain-containing protein 1
OS=Homo sapiens GN=LYSMD1 PE=1 SV=1
Length = 227
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 117 ISHRLARGDTVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPI-SSPELLIDGI 173
+ H+L GDT+A LA+KY V + IKR N + ++ I+ ++ L IPI + P L +G+
Sbjct: 40 LEHQLEPGDTLAGLALKYGVTMEQIKRANRLYTNDSIFLKKTLYIPILTEPRDLFNGL 97
>sp|Q5HZA4|LYSM1_RAT LysM and putative peptidoglycan-binding domain-containing protein 1
OS=Rattus norvegicus GN=Lysmd1 PE=2 SV=1
Length = 227
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 117 ISHRLARGDTVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPI-SSPELLIDGI 173
+ H+L GDT+A LA+KY V + IKR N + ++ I+ ++ L IPI + P L +G+
Sbjct: 40 LEHQLEPGDTLAGLALKYGVTMEQIKRTNRLYTNDSIFLKKTLYIPILTEPRDLFNGL 97
>sp|Q9N012|LYSM1_MACFA LysM and putative peptidoglycan-binding domain-containing protein 1
OS=Macaca fascicularis GN=LYSMD1 PE=2 SV=1
Length = 227
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 117 ISHRLARGDTVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPI-SSPELLIDGI 173
+ H+L GDT+A LA+KY V + IKR N + ++ I+ ++ L IPI + P L +G+
Sbjct: 40 LEHQLEPGDTLAGLALKYGVTMEQIKRANRLYTNDSIFLKKTLYIPILTEPRDLFNGL 97
>sp|Q8IV50|LYSM2_HUMAN LysM and putative peptidoglycan-binding domain-containing protein 2
OS=Homo sapiens GN=LYSMD2 PE=1 SV=1
Length = 215
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 8/97 (8%)
Query: 111 GIGKFAISHRLARGDTVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIP-ISSPELL 169
G+ + + HR+ GDT+ +A+KY V + IKR N + ++ I+ ++ L IP IS LL
Sbjct: 65 GVIERHVEHRVRAGDTLQGIALKYGVTMEQIKRANKLFTNDCIFLKKTLNIPVISEKPLL 124
Query: 170 IDGICYIEF-------DTYAKREVAVLYLEGAPEKKP 199
+G+ I+ +++++ E V+ E P P
Sbjct: 125 FNGLNSIDSPENETADNSFSQEEEPVVAGEDLPPPSP 161
>sp|Q6DEF4|LYSM2_DANRE LysM and putative peptidoglycan-binding domain-containing protein 2
OS=Danio rerio GN=lysmd2 PE=2 SV=1
Length = 208
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 112 IGKFAISHRLARGDTVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPISS 165
+G+ I HR+ G+T+ +A+KY V + IKR+N + S+ I+ R L IP+ S
Sbjct: 60 LGEKYIEHRVTDGETLQGIALKYGVTMEQIKRVNKLFSNDCIFLRNTLSIPVKS 113
>sp|Q9D7V2|LYSM2_MOUSE LysM and putative peptidoglycan-binding domain-containing protein 2
OS=Mus musculus GN=Lysmd2 PE=2 SV=2
Length = 215
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 117 ISHRLARGDTVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPI-SSPELLIDGICY 175
+ HR+ GDT+ +A+KY V + IKR N + ++ I+ ++ L IPI S LL +G+
Sbjct: 71 VEHRVRAGDTLQGIALKYGVTMEQIKRANKLFTNDCIFLKKTLSIPILSEKPLLFNGLNS 130
Query: 176 IE 177
I+
Sbjct: 131 ID 132
>sp|Q1JQA8|LYSM2_BOVIN LysM and putative peptidoglycan-binding domain-containing protein 2
OS=Bos taurus GN=LYSMD2 PE=2 SV=1
Length = 215
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 111 GIGKFAISHRLARGDTVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIP-ISSPELL 169
G+ + + HR+ GDT+ +A+KY V + IKR N + ++ I+ ++ L IP IS LL
Sbjct: 66 GVIERHVEHRVRAGDTLQGIALKYGVSMEQIKRANKLFTNDCIFLKKTLNIPVISEKPLL 125
Query: 170 IDGICYIE 177
+G+ ++
Sbjct: 126 FNGLNSVD 133
>sp|Q6P606|LYSM4_DANRE LysM and putative peptidoglycan-binding domain-containing protein 4
OS=Danio rerio GN=lysmd4 PE=2 SV=2
Length = 267
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 111 GIGKFAISHR-LARGDTVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPISSPELL 169
G+G+ + R ++ D ++ LA++Y +V DIKR+NN+ + +Y+ + + IP+ LL
Sbjct: 63 GVGEMLLLERDISHEDNLSKLALQYGCKVADIKRVNNLFQEQDMYALKSIKIPVRKHGLL 122
Query: 170 IDGIC 174
+ I
Sbjct: 123 TEAIS 127
>sp|Q7Z3D4|LYSM3_HUMAN LysM and putative peptidoglycan-binding domain-containing protein 3
OS=Homo sapiens GN=LYSMD3 PE=1 SV=2
Length = 306
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 115 FAISHRLARGDTVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPISSPELLIDGIC 174
++ + GDT+ ++A++Y V DIKR+NN++SD ++ + IP+ L + +C
Sbjct: 63 IVLTKDIQEGDTLNAIALQYCCTVADIKRVNNLISDQDFFALRSIKIPVKKFSSLTETLC 122
>sp|Q3B7I8|LYSM2_XENTR LysM and putative peptidoglycan-binding domain-containing protein 2
OS=Xenopus tropicalis GN=lysmd2 PE=2 SV=1
Length = 207
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 117 ISHRLARGDTVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIP-ISSPELLIDGI 173
I HRL+ DT+ +A+KY V + IKR N + S I+ R+ L IP IS L +G+
Sbjct: 61 IEHRLSPSDTLQGIALKYGVTMEQIKRANKLFSTDCIFLRKSLNIPVISKKGSLFNGL 118
>sp|Q5ZKK0|LYSM3_CHICK LysM and putative peptidoglycan-binding domain-containing protein 3
OS=Gallus gallus GN=LYSMD3 PE=2 SV=1
Length = 300
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%)
Query: 108 RDNGIGKFAISHRLARGDTVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPISSPE 167
RD G ++ + GDT+ ++A++Y V DIKR+NN+++D ++ + IP+
Sbjct: 55 RDRLDGIILLTKDIQEGDTLNAIALQYCCSVADIKRVNNLINDQDFFALRSIKIPVKKFS 114
Query: 168 LLID 171
+L +
Sbjct: 115 VLTE 118
>sp|Q6DCC7|LYSM4_XENLA LysM and putative peptidoglycan-binding domain-containing protein 4
OS=Xenopus laevis GN=lysmd4 PE=2 SV=1
Length = 289
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 32/51 (62%)
Query: 121 LARGDTVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPISSPELLID 171
+ D + LA++Y +V DIKR+NN+++D IY+ + + IP+ LL +
Sbjct: 75 ITEDDNLNKLALQYGCKVSDIKRVNNLITDQDIYALKTIKIPVKVHGLLTE 125
>sp|Q9FF30|FB267_ARATH Putative F-box protein At5g38270 OS=Arabidopsis thaliana
GN=At5g38270 PE=4 SV=1
Length = 406
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 39 MNSHFSALACPDTLRLILSNLSVTDLARASCVCRAWSSVASDNNMIVLAFMAPWKLKEV 97
+N +S L CPD LR IL +LS TD RA VC W S N + + PW++ V
Sbjct: 18 VNHDWSKL-CPDILRSILESLSSTDFHRAKTVCSDWYS----NWKTCVKPLCPWRIMYV 71
>sp|Q5M836|LYSM3_RAT LysM and putative peptidoglycan-binding domain-containing protein 3
OS=Rattus norvegicus GN=Lysmd3 PE=2 SV=1
Length = 300
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 31/48 (64%)
Query: 117 ISHRLARGDTVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPIS 164
++ + GDT+ ++A++Y V DIKR+NN++SD ++ + IP+
Sbjct: 65 LTKDIQEGDTLNAVALQYCCTVADIKRVNNLISDQDFFALRSIKIPVK 112
>sp|Q99LE3|LYSM3_MOUSE LysM and putative peptidoglycan-binding domain-containing protein 3
OS=Mus musculus GN=Lysmd3 PE=2 SV=1
Length = 305
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 121 LARGDTVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPIS 164
+ GDT+ ++A++Y V DIKR+NN++SD ++ + IP+
Sbjct: 69 IQEGDTLNAVALQYCCTVADIKRVNNLISDQDFFALRSIKIPVK 112
>sp|Q5XG99|LYSM4_HUMAN LysM and putative peptidoglycan-binding domain-containing protein 4
OS=Homo sapiens GN=LYSMD4 PE=2 SV=2
Length = 296
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 111 GIGKFAISHR-LARGDTVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPISSPELL 169
G G + R LA+ D++ LA++Y +V DIK++NN + + +Y+ + + IP+ + +L
Sbjct: 67 GAGDVVLLQRELAQEDSLNKLALQYGCKVADIKKVNNFIREQDLYALKSVKIPVRNHGIL 126
Query: 170 ID 171
++
Sbjct: 127 ME 128
>sp|Q01836|P60_LISIN Probable endopeptidase p60 OS=Listeria innocua serovar 6a (strain
CLIP 11262) GN=iap PE=3 SV=2
Length = 467
Score = 40.0 bits (92), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 116 AISHRLARGDTVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLI 161
A +H + GDT+ +L+VKY V V DI NN+ S IY ++L I
Sbjct: 198 ATTHNVKSGDTIWALSVKYGVSVQDIMSWNNLSSSS-IYVGQKLAI 242
>sp|Q3EA00|FB235_ARATH Putative F-box protein At4g17565 OS=Arabidopsis thaliana
GN=At4g17565 PE=4 SV=1
Length = 378
Score = 40.0 bits (92), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 48 CPDTLRLILSNLSVTDLARASCVCRAWSSVA 78
CPD LR I LS T+L RA VCR+W+S +
Sbjct: 22 CPDLLRSIFEQLSFTNLNRAKLVCRSWNSAS 52
>sp|Q8CC84|LYSM4_MOUSE LysM and putative peptidoglycan-binding domain-containing protein 4
OS=Mus musculus GN=Lysmd4 PE=2 SV=1
Length = 293
Score = 39.7 bits (91), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 111 GIGKFAISHR-LARGDTVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPISSPELL 169
G G + R LA+ D++ LA++Y +V DIK+ NN + + +Y+ + + IP+ + +L
Sbjct: 64 GAGTMVLLQRELAQEDSLNKLALQYGCKVADIKKANNFIREQDLYALKSIKIPVRNHGIL 123
Query: 170 ID 171
+
Sbjct: 124 TE 125
>sp|P21171|P60_LISMO Probable endopeptidase p60 OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=iap PE=1 SV=2
Length = 484
Score = 39.7 bits (91), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 116 AISHRLARGDTVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLI 161
A +H + GDT+ +L+VKY V V DI NN+ S IY ++L I
Sbjct: 200 ATTHAVKSGDTIWALSVKYGVSVQDIMSWNNLSSSS-IYVGQKLAI 244
>sp|Q28DG6|LYSM3_XENTR LysM and putative peptidoglycan-binding domain-containing protein 3
OS=Xenopus tropicalis GN=lysmd3 PE=2 SV=1
Length = 262
Score = 39.3 bits (90), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%)
Query: 117 ISHRLARGDTVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPI 163
IS + GDT+ S+A++Y V D+KR NN +++ ++ + IP+
Sbjct: 70 ISRDICEGDTLNSIALQYCCTVADLKRANNFLNEQDFFALRTIKIPV 116
>sp|Q3KPL3|LYSM2_XENLA LysM and putative peptidoglycan-binding domain-containing protein 2
OS=Xenopus laevis GN=lysmd2 PE=2 SV=2
Length = 206
Score = 39.3 bits (90), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 117 ISHRLARGDTVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPI 163
I H L+ DT+ +A+KY V + IKR N + S I+ R+ L IP+
Sbjct: 59 IEHCLSPSDTLQGIALKYGVTMEQIKRANKLFSTDCIFLRKSLNIPV 105
>sp|Q5PQ30|LYSM1_XENLA LysM and putative peptidoglycan-binding domain-containing protein 1
OS=Xenopus laevis GN=lysmd1 PE=2 SV=1
Length = 215
Score = 39.3 bits (90), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 31/49 (63%)
Query: 117 ISHRLARGDTVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPISS 165
+ H++ GDT+ LA++Y V + IKR N + ++ I+ ++ L IP ++
Sbjct: 37 LEHQVQPGDTLQGLALRYGVSMEQIKRANRLYTNDSIFLKKSLYIPATA 85
>sp|Q6IQA2|LYSM3_DANRE LysM and putative peptidoglycan-binding domain-containing protein 3
OS=Danio rerio GN=lysmd3 PE=2 SV=1
Length = 305
Score = 38.5 bits (88), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 121 LARGDTVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPI 163
+ GDT+ S++++Y V DIKR NN++++ ++ L IP+
Sbjct: 72 IKEGDTLISISLQYFCTVADIKRANNLLTEQDFFALRSLRIPV 114
>sp|Q9ZPR5|FB97_ARATH Putative F-box protein At2g03610 OS=Arabidopsis thaliana
GN=At2g03610 PE=4 SV=1
Length = 216
Score = 38.5 bits (88), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 40 NSHFSALACPDTLRLILSNLSVTDLARASCVCRAWSSV 77
N +S L CPD LR IL +LS D RA VC W SV
Sbjct: 19 NQDWSKL-CPDLLRPILESLSSIDFHRAKTVCSDWYSV 55
>sp|Q9ZPS0|FBX7_ARATH F-box only protein 7 OS=Arabidopsis thaliana GN=FBX7 PE=2 SV=3
Length = 395
Score = 38.1 bits (87), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 40 NSHFSALACPDTLRLILSNLSVTDLARASCVCRAWSSVASDNNMIVLAFMAPWKL 94
N +S L CPD LR I+ +LS D RA VC W SV V + PW++
Sbjct: 19 NHDWSKL-CPDILRKIIESLSSLDFYRAKIVCSDWYSVWK---TCVKRPLRPWRI 69
>sp|Q5REP3|LYSM4_PONAB LysM and putative peptidoglycan-binding domain-containing protein 4
OS=Pongo abelii GN=LYSMD4 PE=2 SV=1
Length = 296
Score = 37.7 bits (86), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 111 GIGKFAISHR-LARGDTVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPISSPELL 169
G G + R LA+ D++ LA++Y +V DIK++NN + + +Y+ + + P+ + +L
Sbjct: 67 GAGDVVLLQRELAQEDSLNKLALQYGCKVADIKKVNNFIREQDLYALKSIKSPVKNHGIL 126
Query: 170 ID 171
+
Sbjct: 127 TE 128
>sp|Q7XR80|ARP8_ORYSJ Actin-related protein 8 OS=Oryza sativa subsp. japonica GN=ARP8
PE=2 SV=1
Length = 484
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 50 DTLRLILSNLSVTDLARASCVCRAWSSVASDNNMIVLAFMA---PWKL 94
D L IL L D AR++ VCRAW +ASDN + PW+L
Sbjct: 53 DVLAQILRLLGPADAARSTAVCRAWRLLASDNGLWAFFLRLGPDPWEL 100
>sp|A8WAT2|ARP8_ORYSI Actin-related protein 8 OS=Oryza sativa subsp. indica GN=ARP8 PE=2
SV=1
Length = 484
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 50 DTLRLILSNLSVTDLARASCVCRAWSSVASDNNMIVLAFMA---PWKL 94
D L IL L D AR++ VCRAW +ASDN + PW+L
Sbjct: 53 DVLAQILRLLGPADAARSTAVCRAWRLLASDNGLWAFFLRLGPDPWEL 100
>sp|Q9ZW91|FB318_ARATH Probable F-box protein At1g67160 OS=Arabidopsis thaliana
GN=At1g67160 PE=4 SV=1
Length = 450
Score = 37.0 bits (84), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 39 MNSHFSALACPDTLRLILSNLSVTDLARASCVCRAWSSVASDNNMIVLAFMAPW 92
M F A D +RLIL LS D RA CV W VAS + + V PW
Sbjct: 9 MEGRFEAAYIVDLVRLILERLSFVDFHRARCVSSTW-YVASKSVIGVTNPTTPW 61
>sp|Q9XIA2|FB49_ARATH F-box protein At1g49360 OS=Arabidopsis thaliana GN=At1g49360 PE=2
SV=1
Length = 481
Score = 36.6 bits (83), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 50 DTLRLILSNLSVTDLARASCVCRAWSSVAS 79
D +RLILS LS D R+S VC+AW +A+
Sbjct: 114 DLVRLILSRLSFKDNIRSSTVCKAWGDIAA 143
>sp|Q5HGI5|LYTN_STAAC Probable cell wall hydrolase LytN OS=Staphylococcus aureus (strain
COL) GN=lytN PE=3 SV=1
Length = 383
Score = 36.2 bits (82), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 32/46 (69%)
Query: 119 HRLARGDTVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPIS 164
+ + +GDT++++A+KY V +I+ NN+ + + I+ ++L +P++
Sbjct: 177 YTVKKGDTLSAIALKYKTTVSNIQNTNNIANPNLIFIGQKLKVPMT 222
>sp|Q7A5Y8|LYTN_STAAN Probable cell wall hydrolase LytN OS=Staphylococcus aureus (strain
N315) GN=lytN PE=3 SV=2
Length = 383
Score = 36.2 bits (82), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 32/46 (69%)
Query: 119 HRLARGDTVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPIS 164
+ + +GDT++++A+KY V +I+ NN+ + + I+ ++L +P++
Sbjct: 177 YTVKKGDTLSAIALKYKTTVSNIQNTNNIANPNLIFIGQKLKVPMT 222
>sp|Q99UM3|LYTN_STAAM Probable cell wall hydrolase LytN OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=lytN PE=3 SV=2
Length = 383
Score = 36.2 bits (82), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 32/46 (69%)
Query: 119 HRLARGDTVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPIS 164
+ + +GDT++++A+KY V +I+ NN+ + + I+ ++L +P++
Sbjct: 177 YTVKKGDTLSAIALKYKTTVSNIQNTNNIANPNLIFIGQKLKVPMT 222
>sp|Q7A123|LYTN_STAAW Probable cell wall hydrolase LytN OS=Staphylococcus aureus (strain
MW2) GN=lytN PE=3 SV=2
Length = 383
Score = 36.2 bits (82), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 32/46 (69%)
Query: 119 HRLARGDTVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPIS 164
+ + +GDT++++A+KY V +I+ NN+ + + I+ ++L +P++
Sbjct: 177 YTVKKGDTLSAIALKYKTTVSNIQNTNNIANPNLIFIGQKLKVPMT 222
>sp|Q6G9W6|LYTN_STAAS Probable cell wall hydrolase LytN OS=Staphylococcus aureus (strain
MSSA476) GN=lytN PE=3 SV=2
Length = 383
Score = 36.2 bits (82), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 32/46 (69%)
Query: 119 HRLARGDTVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPIS 164
+ + +GDT++++A+KY V +I+ NN+ + + I+ ++L +P++
Sbjct: 177 YTVKKGDTLSAIALKYKTTVSNIQNTNNIANPNLIFIGQKLKVPMT 222
>sp|Q6GHI8|LYTN_STAAR Probable cell wall hydrolase LytN OS=Staphylococcus aureus (strain
MRSA252) GN=lytN PE=3 SV=2
Length = 383
Score = 36.2 bits (82), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 32/46 (69%)
Query: 119 HRLARGDTVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPIS 164
+ + +GDT++++A+KY V +I+ NN+ + + I+ ++L +P++
Sbjct: 177 YTVKKGDTLSAIALKYKTTVSNIQNTNNIANPNLIFIGQKLKVPMT 222
>sp|Q9ZNI1|LYTN_STAA8 Probable cell wall hydrolase LytN OS=Staphylococcus aureus (strain
NCTC 8325) GN=lytN PE=2 SV=2
Length = 383
Score = 36.2 bits (82), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 32/46 (69%)
Query: 119 HRLARGDTVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPIS 164
+ + +GDT++++A+KY V +I+ NN+ + + I+ ++L +P++
Sbjct: 177 YTVKKGDTLSAIALKYKTTVSNIQNTNNIANPNLIFIGQKLKVPMT 222
>sp|Q01839|P60_LISWE Probable endopeptidase p60 OS=Listeria welshimeri GN=iap PE=3 SV=1
Length = 524
Score = 35.8 bits (81), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 116 AISHRLARGDTVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPISS 165
A +H + GDT+ +L+VKY V D+ NN+ S IY +++ + S+
Sbjct: 195 ATTHTVKSGDTIWALSVKYGASVQDLMSWNNLSSSS-IYVGQKIAVKQSA 243
>sp|Q7TSL3|FBX11_RAT F-box only protein 11 OS=Rattus norvegicus GN=Fbxo11 PE=2 SV=1
Length = 843
Score = 35.0 bits (79), Expect = 0.58, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 49 PDTLRL-ILSNLSVTDLARASCVCRAWSSVASDNNMIVLAFMAPWKLKEVVGMPLNGSFW 107
PD + L I S L DL RA+CVC+ +S +A+D + +M ++ + P G F+
Sbjct: 76 PDEVVLKIFSYLLEQDLCRAACVCKRFSELANDPILWKRLYMEVFEYTRPMMHPEPGKFY 135
Query: 108 RDN 110
+ N
Sbjct: 136 QIN 138
>sp|Q7TPD1|FBX11_MOUSE F-box only protein 11 OS=Mus musculus GN=Fbxo11 PE=2 SV=2
Length = 843
Score = 35.0 bits (79), Expect = 0.58, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 49 PDTLRL-ILSNLSVTDLARASCVCRAWSSVASDNNMIVLAFMAPWKLKEVVGMPLNGSFW 107
PD + L I S L DL RA+CVC+ +S +A+D + +M ++ + P G F+
Sbjct: 76 PDEVVLKIFSYLLEQDLCRAACVCKRFSELANDPILWKRLYMEVFEYTRPMMHPEPGKFY 135
Query: 108 RDN 110
+ N
Sbjct: 136 QIN 138
>sp|Q86XK2|FBX11_HUMAN F-box only protein 11 OS=Homo sapiens GN=FBXO11 PE=1 SV=3
Length = 927
Score = 35.0 bits (79), Expect = 0.58, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 49 PDTLRL-ILSNLSVTDLARASCVCRAWSSVASDNNMIVLAFMAPWKLKEVVGMPLNGSFW 107
PD + L I S L DL RA+CVC+ +S +A+D + +M ++ + P G F+
Sbjct: 160 PDEVVLKIFSYLLEQDLCRAACVCKRFSELANDPILWKRLYMEVFEYTRPMMHPEPGKFY 219
Query: 108 RDN 110
+ N
Sbjct: 220 QIN 222
>sp|Q9P403|CIH1_COLLN Intracellular hyphae protein 1 OS=Colletotrichum lindemuthianum
GN=CIH1 PE=1 SV=1
Length = 230
Score = 34.7 bits (78), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 90 APWKLK---EVVGMPLNGSFWRDNGIGKFAISHRLARGDTVASLAVKYSVQVMDIKRLNN 146
P+K K G P N + + +H++ G+++ ++A KY + +I +LNN
Sbjct: 78 GPYKPKLPEPTTGDPKNNTLPVPTCVDGKIKTHKVKSGESLTTIAEKYDTGICNIAKLNN 137
Query: 147 MMSDHGIYSRERLLIPISS 165
+ + + + L IP +
Sbjct: 138 LADPNFVDLNQDLQIPTDA 156
>sp|B5EB50|PYRC_GEOBB Dihydroorotase OS=Geobacter bemidjiensis (strain Bem / ATCC
BAA-1014 / DSM 16622) GN=pyrC PE=3 SV=1
Length = 424
Score = 34.7 bits (78), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 165 SPELLIDGICYIEFDTYAKREVAVLYLEGAPEKKPSCLLNRVTSVHGRRRIINSLRRSMQ 224
S EL + GI + D REV + GAP + +++V R I N+ R ++
Sbjct: 198 STELGLKGIPWAAEDIAVAREVYLAEFAGAP-----VHIAHISTVGSARIIRNAKARGVK 252
Query: 225 VDDETAQYYLSISNGNLRA 243
V ETA +Y ++++ +R
Sbjct: 253 VTCETAPHYFTLTDEAVRG 271
>sp|Q9ZUF1|FB99_ARATH F-box protein At2g05970 OS=Arabidopsis thaliana GN=At2g05970 PE=2
SV=1
Length = 377
Score = 34.7 bits (78), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 48 CPDTLRLILSNLSVTDLARASCVCRAWSSVA 78
CPD LR + LS +DL R VC +W S +
Sbjct: 14 CPDVLRCVFELLSFSDLNRTRSVCSSWHSAS 44
>sp|Q01838|P60_LISSE Probable endopeptidase p60 OS=Listeria seeligeri GN=iap PE=3 SV=1
Length = 523
Score = 34.7 bits (78), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 116 AISHRLARGDTVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPISS 165
A +H + GDT+ +L+VKY V D+ NN+ S IY + + + S+
Sbjct: 197 ATTHTVKSGDTIWALSVKYGASVQDLMSWNNLSSSS-IYVGQNIAVKQSA 245
>sp|O49315|FB123_ARATH Putative F-box protein At2g33200 OS=Arabidopsis thaliana
GN=At2g33200 PE=4 SV=1
Length = 376
Score = 34.3 bits (77), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 48 CPDTLRLILSNLSVTDLARASCVCRAWSSVASDNNMIVLAFMAPWKLK 95
C D LRLIL +L D RA VC W + ++ + PW++K
Sbjct: 12 CHDILRLILESLHYKDYHRARTVCSNWYTASTTCKRP----LYPWRIK 55
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.131 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,343,019
Number of Sequences: 539616
Number of extensions: 3436088
Number of successful extensions: 10486
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 10415
Number of HSP's gapped (non-prelim): 99
length of query: 261
length of database: 191,569,459
effective HSP length: 115
effective length of query: 146
effective length of database: 129,513,619
effective search space: 18908988374
effective search space used: 18908988374
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)