Query 024891
Match_columns 261
No_of_seqs 254 out of 1119
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 16:14:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024891.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024891hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2djp_A Hypothetical protein SB 99.4 5.7E-13 1.9E-17 98.6 6.2 51 114-164 13-63 (77)
2 1e0g_A Membrane-bound lytic mu 99.3 1.5E-12 5E-17 87.3 5.6 45 117-163 3-47 (48)
3 4eby_A Chitin elicitor recepto 99.2 1.1E-11 3.8E-16 109.0 8.1 105 45-166 82-191 (212)
4 2l9y_A CVNH-LYSM lectin; carbo 99.2 1.5E-11 5.3E-16 104.5 6.8 50 116-165 62-111 (167)
5 4eby_A Chitin elicitor recepto 99.1 3.5E-11 1.2E-15 105.8 5.5 100 46-164 14-128 (212)
6 1fs1_A SKP2 F-BOX, cyclin A/CD 99.0 2.6E-10 8.9E-15 78.4 3.0 44 42-86 8-51 (53)
7 2e31_A FBS1, F-box only protei 98.7 4.3E-09 1.5E-13 97.0 4.0 49 42-91 50-99 (297)
8 3l2o_B F-box only protein 4; s 98.5 2.8E-08 9.6E-13 92.2 3.4 60 41-101 3-65 (312)
9 2gu1_A Zinc peptidase; alpha/b 98.5 7.3E-08 2.5E-12 90.2 4.7 51 115-165 6-60 (361)
10 4a1k_A Putative L, D-transpept 98.4 3E-07 1E-11 77.6 5.7 47 116-163 2-48 (165)
11 2gu1_A Zinc peptidase; alpha/b 98.3 5.5E-07 1.9E-11 84.3 4.8 113 45-164 11-153 (361)
12 1p22_A F-BOX/WD-repeat protein 98.1 9.5E-07 3.3E-11 80.3 2.1 47 43-90 11-61 (435)
13 3v7d_B Cell division control p 98.0 1.4E-06 4.7E-11 79.0 2.5 48 43-91 15-63 (464)
14 2ovr_B FBW7, F-BOX/WD repeat p 98.0 3.7E-06 1.3E-10 76.3 5.0 47 43-90 19-65 (445)
15 2ast_B S-phase kinase-associat 97.6 1.8E-05 6E-10 69.8 2.6 45 41-86 7-51 (336)
16 2l9y_A CVNH-LYSM lectin; carbo 97.5 8.9E-07 3.1E-11 75.1 -7.6 91 43-150 65-159 (167)
17 1v92_A NSFL1 cofactor P47; 3-h 97.2 0.00058 2E-08 45.4 5.0 37 215-251 8-44 (46)
18 2dam_A ETEA protein; KIAA0887, 97.0 0.00091 3.1E-08 48.7 5.1 37 215-251 21-58 (67)
19 3e21_A HFAF1, FAS-associated f 97.0 0.00054 1.8E-08 46.5 3.2 36 214-249 7-43 (45)
20 2dal_A Protein KIAA0794; FAS a 96.9 0.0013 4.5E-08 47.0 5.2 36 216-251 19-54 (62)
21 3slu_A M23 peptidase domain pr 96.9 0.0019 6.3E-08 61.0 7.2 53 113-165 11-67 (371)
22 2p1m_B Transport inhibitor res 96.8 0.0005 1.7E-08 64.9 2.6 34 43-77 6-40 (594)
23 2dzl_A Protein FAM100B; UBA-li 96.8 0.0013 4.4E-08 47.8 4.1 37 215-251 20-56 (66)
24 3ogk_B Coronatine-insensitive 96.1 0.0024 8.2E-08 60.3 2.8 32 45-77 15-47 (592)
25 1oai_A Nuclear RNA export fact 93.3 0.19 6.6E-06 35.5 5.8 42 212-253 7-48 (59)
26 2jp7_A MRNA export factor MEX6 93.3 0.13 4.6E-06 36.2 4.9 39 212-250 6-44 (57)
27 3bq3_A Defective in cullin ned 93.0 0.12 4E-06 46.9 5.4 38 215-252 18-55 (270)
28 4gew_A 5'-tyrosyl-DNA phosphod 86.6 0.5 1.7E-05 43.3 3.9 33 219-251 52-84 (362)
29 1wj7_A Hypothetical protein (R 81.0 0.81 2.8E-05 36.0 2.4 30 223-252 50-79 (104)
30 1z96_A DNA-damage, UBA-domain 80.3 2 6.8E-05 26.8 3.7 26 223-248 14-39 (40)
31 2jy5_A Ubiquilin-1; UBA, alter 74.4 9.1 0.00031 25.8 5.9 27 222-248 21-48 (52)
32 2cp9_A EF-TS, EF-TSMT, elongat 72.6 6 0.00021 28.3 4.8 37 215-251 12-48 (64)
33 2knz_A Ubiquilin-4; cytoplasm, 72.0 12 0.00042 25.2 6.1 28 222-249 20-48 (53)
34 2lfc_A Fumarate reductase, fla 70.5 2.6 9E-05 34.2 2.9 26 121-146 92-121 (160)
35 2l2d_A OTU domain-containing p 69.3 8.7 0.0003 27.9 5.0 36 215-250 20-55 (73)
36 3q8g_A CRAL-TRIO domain-contai 68.5 13 0.00045 33.4 7.4 44 216-259 43-93 (320)
37 2dhy_A CUE domain-containing p 64.7 18 0.00062 25.9 6.0 32 219-250 26-57 (67)
38 1otr_A Protein CUE2; protein-p 60.6 8.2 0.00028 26.2 3.3 32 219-250 12-43 (49)
39 2glo_A Brinker CG9653-PA; prot 59.1 5.4 0.00019 26.7 2.3 26 121-146 18-47 (59)
40 1aua_A Phosphatidylinositol tr 57.5 33 0.0011 29.8 7.7 34 225-258 50-83 (296)
41 1jkg_B TAP; NTF2-like domain, 57.2 2.2 7.6E-05 37.6 0.0 39 214-252 200-238 (250)
42 1wr1_B Ubiquitin-like protein 53.3 30 0.001 23.9 5.4 32 217-249 22-54 (58)
43 1wgl_A TOLL-interacting protei 51.2 37 0.0013 23.6 5.6 32 219-250 17-48 (59)
44 1vej_A Riken cDNA 4931431F19; 50.9 62 0.0021 23.5 7.0 28 222-249 38-66 (74)
45 1tc3_C Protein (TC3 transposas 50.3 16 0.00056 21.9 3.4 25 121-145 18-42 (51)
46 1veg_A NEDD8 ultimate buster-1 48.8 19 0.00063 27.0 3.9 29 222-250 38-66 (83)
47 1rr7_A Middle operon regulator 48.3 13 0.00044 29.6 3.2 22 123-144 91-112 (129)
48 2jn6_A Protein CGL2762, transp 48.0 12 0.00042 27.1 2.8 24 122-145 20-44 (97)
49 1vg5_A RSGI RUH-014, rhomboid 47.9 19 0.00064 26.2 3.7 29 222-250 38-66 (73)
50 2dah_A Ubiquilin-3; UBA domain 47.9 22 0.00074 24.2 3.9 28 222-249 18-46 (54)
51 1ify_A HHR23A, UV excision rep 47.7 18 0.00061 24.0 3.3 28 222-249 17-44 (49)
52 2elh_A CG11849-PA, LD40883P; s 47.3 15 0.00052 26.4 3.2 23 122-144 36-58 (87)
53 2g3q_A Protein YBL047C; endocy 45.4 26 0.00087 22.2 3.7 28 222-249 13-40 (43)
54 1jko_C HIN recombinase, DNA-in 45.0 14 0.00047 22.8 2.4 24 121-144 18-41 (52)
55 2jrt_A Uncharacterized protein 44.6 17 0.00058 27.5 3.2 32 117-148 42-73 (95)
56 2djp_A Hypothetical protein SB 44.2 13 0.00043 26.2 2.3 41 44-91 18-61 (77)
57 3hx3_A Retinaldehyde-binding p 42.7 43 0.0015 29.8 6.1 35 225-259 90-124 (316)
58 4abx_A DNA repair protein RECN 40.7 12 0.00041 30.8 2.0 23 122-144 129-151 (175)
59 2cob_A LCOR protein; MLR2, KIA 40.6 15 0.00052 26.8 2.2 42 121-162 26-69 (70)
60 1tr8_A Conserved protein (MTH1 39.1 38 0.0013 26.1 4.5 33 216-248 69-101 (102)
61 1wji_A Tudor domain containing 35.6 43 0.0015 23.4 3.9 29 222-250 18-46 (63)
62 2rn7_A IS629 ORFA; helix, all 34.4 15 0.00051 27.1 1.4 21 125-145 31-51 (108)
63 3slu_A M23 peptidase domain pr 33.5 37 0.0013 31.6 4.3 43 122-164 115-161 (371)
64 2x48_A CAG38821; archeal virus 32.7 42 0.0014 21.4 3.3 24 121-144 28-51 (55)
65 2bwb_A Ubiquitin-like protein 30.3 1.1E+02 0.0039 19.8 5.3 28 222-249 16-44 (46)
66 1olm_A SEC14-like protein 2; l 30.2 1.2E+02 0.004 27.6 7.1 35 225-259 33-67 (403)
67 3tqn_A Transcriptional regulat 29.1 47 0.0016 24.9 3.5 27 120-146 26-55 (113)
68 2ek5_A Predicted transcription 28.6 46 0.0016 25.9 3.5 26 120-145 21-49 (129)
69 2dak_A Ubiquitin carboxyl-term 28.3 54 0.0018 22.6 3.4 28 223-250 19-46 (63)
70 1xn7_A Hypothetical protein YH 26.6 44 0.0015 24.2 2.8 34 124-161 16-49 (78)
71 1nri_A Hypothetical protein HI 26.2 24 0.00082 31.4 1.5 44 213-256 245-288 (306)
72 2cwb_A Chimera of immunoglobul 26.0 67 0.0023 25.0 3.9 28 222-249 75-103 (108)
73 1wgn_A UBAP1, ubiquitin associ 26.0 64 0.0022 23.0 3.4 33 216-249 23-55 (63)
74 2o8x_A Probable RNA polymerase 25.8 59 0.002 21.3 3.2 23 122-144 29-51 (70)
75 3neu_A LIN1836 protein; struct 25.7 57 0.002 25.0 3.5 26 120-145 30-58 (125)
76 1wiv_A UBP14, ubiquitin-specif 25.4 76 0.0026 22.7 3.9 28 222-249 38-65 (73)
77 1pdn_C Protein (PRD paired); p 24.8 51 0.0017 23.9 2.9 24 121-144 30-53 (128)
78 3k9o_A Ubiquitin-conjugating e 24.8 65 0.0022 27.0 3.9 28 222-249 172-199 (201)
79 1ufz_A Hypothetical protein BA 24.5 1.5E+02 0.0052 22.1 5.5 40 214-253 36-77 (83)
80 2p7v_B Sigma-70, RNA polymeras 24.2 71 0.0024 21.3 3.4 23 122-144 23-45 (68)
81 3frw_A Putative Trp repressor 23.8 45 0.0015 26.1 2.5 27 121-147 55-81 (107)
82 4ham_A LMO2241 protein; struct 23.2 68 0.0023 24.7 3.5 28 119-146 30-60 (134)
83 2k02_A Ferrous iron transport 22.3 54 0.0019 24.4 2.6 21 125-145 17-37 (87)
84 3qq6_A HTH-type transcriptiona 22.0 42 0.0015 23.2 1.9 21 124-144 53-73 (78)
85 2b0l_A GTP-sensing transcripti 21.5 65 0.0022 24.1 3.0 26 120-145 36-64 (102)
86 2cp8_A NEXT to BRCA1 gene 1 pr 21.4 1.8E+02 0.0062 19.9 4.9 27 223-249 19-46 (54)
87 1neq_A DNA-binding protein NER 21.3 72 0.0025 22.4 3.0 23 122-144 20-42 (74)
88 1v4r_A Transcriptional repress 20.7 53 0.0018 23.9 2.3 27 120-146 28-57 (102)
89 1u78_A TC3 transposase, transp 20.6 67 0.0023 23.9 2.9 25 121-145 19-43 (141)
90 1k78_A Paired box protein PAX5 20.6 66 0.0022 24.7 2.9 25 121-145 45-69 (149)
91 1zug_A Phage 434 CRO protein; 20.5 79 0.0027 20.5 3.0 22 123-144 43-64 (71)
92 1r5l_A Alpha-TTP, protein (alp 20.4 1.1E+02 0.0038 25.5 4.6 35 225-259 31-65 (262)
93 1fse_A GERE; helix-turn-helix 20.1 93 0.0032 20.6 3.3 24 121-144 23-46 (74)
No 1
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=5.7e-13 Score=98.62 Aligned_cols=51 Identities=39% Similarity=0.673 Sum_probs=47.3
Q ss_pred cceEEEEccCCCcHHHHHHHhCCCHHHHHHHhCCCCCcCccCCCEEEecCC
Q 024891 114 KFAISHRLARGDTVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPIS 164 (261)
Q Consensus 114 ~~~~~h~V~~GDTL~~IA~rYgvsv~~I~~~N~L~s~~~i~~gq~L~IP~~ 164 (261)
..+..|+|++||||++||++||+++++|+++|++..++.|++||+|+||..
T Consensus 13 ~~~~~y~V~~GDTL~~IA~~~~~~~~~l~~~N~l~~~~~l~~Gq~l~iP~~ 63 (77)
T 2djp_A 13 ERRLEHQLEPGDTLAGLALKYGVTMEQIKRANRLYTNDSIFLKKTLYIPIL 63 (77)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTCCHHHHHHHHTCCCSSCGGGSSCEEEEEE
T ss_pred CCcEEEEECCCCcHHHHHHHHCcCHHHHHHHcCCCCccccCCCCEEEECCC
Confidence 357889999999999999999999999999999987778999999999975
No 2
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=99.33 E-value=1.5e-12 Score=87.35 Aligned_cols=45 Identities=24% Similarity=0.489 Sum_probs=42.1
Q ss_pred EEEEccCCCcHHHHHHHhCCCHHHHHHHhCCCCCcCccCCCEEEecC
Q 024891 117 ISHRLARGDTVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPI 163 (261)
Q Consensus 117 ~~h~V~~GDTL~~IA~rYgvsv~~I~~~N~L~s~~~i~~gq~L~IP~ 163 (261)
..|+|++||||++||.+||+++++|+++|+ ....|++||+|.||.
T Consensus 3 ~~y~V~~GDtl~~Ia~~~~~~~~~l~~~N~--~~~~l~~G~~l~ip~ 47 (48)
T 1e0g_A 3 ITYRVRKGDSLSSIAKRHGVNIKDVMRWNS--DTANLQPGDKLTLFV 47 (48)
T ss_dssp CEEEECTTCCHHHHHHHHTCCHHHHHHHCS--CGGGCCTTEEEECCC
T ss_pred EEEEEcCCCcHHHHHHHHCcCHHHHHHhCC--CCCcCCcCCEEEEec
Confidence 579999999999999999999999999999 556899999999996
No 3
>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A*
Probab=99.25 E-value=1.1e-11 Score=108.99 Aligned_cols=105 Identities=16% Similarity=0.117 Sum_probs=74.0
Q ss_pred CCCcccHHHHHH-hc----CCHHHHHHhhhhhhhhhhhccchhhHHHhhcCccccccccccCCCCCccccCCCCcceEEE
Q 024891 45 ALACPDTLRLIL-SN----LSVTDLARASCVCRAWSSVASDNNMIVLAFMAPWKLKEVVGMPLNGSFWRDNGIGKFAISH 119 (261)
Q Consensus 45 ~lp~~D~L~~Il-~r----L~p~~Lara~cVCk~W~~~~~~~~l~~aAF~aPWkl~~vvgsP~~~s~~~~~~~~~~~~~h 119 (261)
.+..||+|+.|. ++ +++.+| +.||.+..+....++.+..|-.-.. +.+ ...........|
T Consensus 82 ~V~~GDTL~~IA~~~y~~lvt~~~L-------~~~N~~~~~~l~~Gq~L~IP~~~~~--~~~------~~~~~~~~~~~Y 146 (212)
T 4eby_A 82 SVRQEDTYERVAISNYANLTTMESL-------QARNPFPATNIPLSATLNVLVNCSC--GDE------SVSKDFGLFVTY 146 (212)
T ss_dssp ECCTTCCHHHHHHTTTTTSSCHHHH-------HHHCCSCTTCCCTTCEEEEEEECCC--CCT------TTCSSCCCEEEE
T ss_pred EecCCCcHHHHHHHhcCCCCCHHHH-------HHhcCCCcccCCCCCEEEEcCCCcC--CCc------ccccCCCCeEEE
Confidence 445599999999 53 688999 7889865555555666655532110 000 011111235789
Q ss_pred EccCCCcHHHHHHHhCCCHHHHHHHhCCCCCcCccCCCEEEecCCCC
Q 024891 120 RLARGDTVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPISSP 166 (261)
Q Consensus 120 ~V~~GDTL~~IA~rYgvsv~~I~~~N~L~s~~~i~~gq~L~IP~~~~ 166 (261)
+|++||||++||+|||+++++|+++|++.. ..+..|+ |+||....
T Consensus 147 ~V~~GDTL~~IA~~fgvsv~~L~~~N~~~~-~~~~~g~-l~IP~~~~ 191 (212)
T 4eby_A 147 PLRPEDSLSSIARSSGVSADILQRYNPGVN-FNSGNGI-VYVPGRDP 191 (212)
T ss_dssp ECCTTCCHHHHHHHHTSCHHHHHHHSTTCC-TTSCSSE-EEEECCCT
T ss_pred EECCCCcHHHHHHHHCcCHHHHHHhcCCCc-cCCCCCE-EEecCCCC
Confidence 999999999999999999999999999874 4565555 99998754
No 4
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}
Probab=99.21 E-value=1.5e-11 Score=104.53 Aligned_cols=50 Identities=22% Similarity=0.457 Sum_probs=47.2
Q ss_pred eEEEEccCCCcHHHHHHHhCCCHHHHHHHhCCCCCcCccCCCEEEecCCC
Q 024891 116 AISHRLARGDTVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPISS 165 (261)
Q Consensus 116 ~~~h~V~~GDTL~~IA~rYgvsv~~I~~~N~L~s~~~i~~gq~L~IP~~~ 165 (261)
...|+|++||||++||.+||+++.+|+++|+|.+++.|++||+|.||...
T Consensus 62 ~~~y~V~~GDTL~~IA~~~~~~~~~l~~~N~~~~~~~i~~Gq~L~ip~~~ 111 (167)
T 2l9y_A 62 TATVTVQQGDTLRDIGRRFDCDFHEIARRNNIQNEDLIYPGQVLQVPTKG 111 (167)
T ss_dssp CEEEEECTTCCHHHHHHHTTCCHHHHHHHHTCCGGGCCCTTEEEEESCCC
T ss_pred CceEEECCCCcHHHHHHHcCCCHHHHHHHcCCCCcccccCCCEEEEcCCC
Confidence 46899999999999999999999999999999998999999999999764
No 5
>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A*
Probab=99.13 E-value=3.5e-11 Score=105.83 Aligned_cols=100 Identities=18% Similarity=0.228 Sum_probs=72.9
Q ss_pred CCcccHHHHHHhcC--CH--------HHHHHhhhhhhhhh-hhc-cchhhHHHhhcCccccccccccCCCCCccccCCCC
Q 024891 46 LACPDTLRLILSNL--SV--------TDLARASCVCRAWS-SVA-SDNNMIVLAFMAPWKLKEVVGMPLNGSFWRDNGIG 113 (261)
Q Consensus 46 lp~~D~L~~Il~rL--~p--------~~Lara~cVCk~W~-~~~-~~~~l~~aAF~aPWkl~~vvgsP~~~s~~~~~~~~ 113 (261)
+..||+|+.|.++. ++ .+| +.|| .+. .+....++.+..|-.-.-. +.. ..
T Consensus 14 V~~GDTL~~IA~~~~vsv~~~~~~~~~~I-------~~~Np~l~~~~~l~~Gq~L~IP~~~~~~-----~~~------~~ 75 (212)
T 4eby_A 14 LENGTTLSVINQNLNSSIAPYDQINFDPI-------LRYNSNIKDKDRIQMGSRVLVPFPCECQ-----PGD------FL 75 (212)
T ss_dssp CCTTCCHHHHHHHTCCSSSCCCSSCCHHH-------HTTCTTCSCTTSCCTTCEEEEEECCEEE-----TTT------EE
T ss_pred eCCCCCHHHHHHHHCCCchhccccCHHHH-------HHhccCCCCcCccCCCCEEEEecccccc-----CCc------cc
Confidence 33499999999965 66 788 7788 775 3444446666655421100 000 11
Q ss_pred cceEEEEccCCCcHHHHH-HHhC--CCHHHHHHHhCCCCCcCccCCCEEEecCC
Q 024891 114 KFAISHRLARGDTVASLA-VKYS--VQVMDIKRLNNMMSDHGIYSRERLLIPIS 164 (261)
Q Consensus 114 ~~~~~h~V~~GDTL~~IA-~rYg--vsv~~I~~~N~L~s~~~i~~gq~L~IP~~ 164 (261)
.....|+|++||||++|| ++|+ +++++|+++|++. ++.|++||+|.||..
T Consensus 76 ~~~~~Y~V~~GDTL~~IA~~~y~~lvt~~~L~~~N~~~-~~~l~~Gq~L~IP~~ 128 (212)
T 4eby_A 76 GHNFSYSVRQEDTYERVAISNYANLTTMESLQARNPFP-ATNIPLSATLNVLVN 128 (212)
T ss_dssp EEEEEEECCTTCCHHHHHHTTTTTSSCHHHHHHHCCSC-TTCCCTTCEEEEEEE
T ss_pred cCceEEEecCCCcHHHHHHHhcCCCCCHHHHHHhcCCC-cccCCCCCEEEEcCC
Confidence 135689999999999999 7999 9999999999965 468999999999964
No 6
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.96 E-value=2.6e-10 Score=78.36 Aligned_cols=44 Identities=30% Similarity=0.520 Sum_probs=40.0
Q ss_pred cccCCCcccHHHHHHhcCCHHHHHHhhhhhhhhhhhccchhhHHH
Q 024891 42 HFSALACPDTLRLILSNLSVTDLARASCVCRAWSSVASDNNMIVL 86 (261)
Q Consensus 42 ~~~~lp~~D~L~~Il~rL~p~~Lara~cVCk~W~~~~~~~~l~~a 86 (261)
.+..|| .|+|..||++|++++|.++++|||.|+.++.++.+|+.
T Consensus 8 ~~~~LP-~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~ 51 (53)
T 1fs1_A 8 SWDSLP-DELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQT 51 (53)
T ss_dssp -CCSSC-HHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC--
T ss_pred CHHHCC-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHh
Confidence 478999 99999999999999999999999999999999999975
No 7
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.74 E-value=4.3e-09 Score=97.03 Aligned_cols=49 Identities=20% Similarity=0.377 Sum_probs=46.2
Q ss_pred cccCCCcccHHHHHHhcCCHHHHH-HhhhhhhhhhhhccchhhHHHhhcCc
Q 024891 42 HFSALACPDTLRLILSNLSVTDLA-RASCVCRAWSSVASDNNMIVLAFMAP 91 (261)
Q Consensus 42 ~~~~lp~~D~L~~Il~rL~p~~La-ra~cVCk~W~~~~~~~~l~~aAF~aP 91 (261)
....|| +|+|.+||.+|++++|+ +++||||.||.|++++.+|+..|...
T Consensus 50 ~~~~LP-~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~ 99 (297)
T 2e31_A 50 YLAELP-EPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE 99 (297)
T ss_dssp CTTSSC-HHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT
T ss_pred ChhhCC-HHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc
Confidence 467999 99999999999999999 99999999999999999999988765
No 8
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.55 E-value=2.8e-08 Score=92.16 Aligned_cols=60 Identities=23% Similarity=0.353 Sum_probs=53.0
Q ss_pred CcccCCCcccHHHHHHhcCCHHHHHHhhhhhhhhhhhccchhhHHHhhc---CccccccccccC
Q 024891 41 SHFSALACPDTLRLILSNLSVTDLARASCVCRAWSSVASDNNMIVLAFM---APWKLKEVVGMP 101 (261)
Q Consensus 41 ~~~~~lp~~D~L~~Il~rL~p~~Lara~cVCk~W~~~~~~~~l~~aAF~---aPWkl~~vvgsP 101 (261)
|.++.|| .|++..||+.|+|+||+++++|||.||.++.|+.||+..|+ ..|.......-|
T Consensus 3 ~~l~~LP-~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~~W~si~~~s~p 65 (312)
T 3l2o_B 3 STLTRLP-IDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKSLP 65 (312)
T ss_dssp CHHHHSC-HHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGGGCCCCCGGGCC
T ss_pred chhHhCC-HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCCCCCccccccCc
Confidence 6688999 99999999999999999999999999999999999999887 448865554444
No 9
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=98.49 E-value=7.3e-08 Score=90.19 Aligned_cols=51 Identities=16% Similarity=0.131 Sum_probs=45.1
Q ss_pred ceEEEEccCCCcHHHHHHHhCCCHHHHHHHhCCCC----CcCccCCCEEEecCCC
Q 024891 115 FAISHRLARGDTVASLAVKYSVQVMDIKRLNNMMS----DHGIYSRERLLIPISS 165 (261)
Q Consensus 115 ~~~~h~V~~GDTL~~IA~rYgvsv~~I~~~N~L~s----~~~i~~gq~L~IP~~~ 165 (261)
.+..|+|++||||++||++||+++.+|+++|++.. ...|++||+|.||...
T Consensus 6 ~~~~~~Vk~GDTL~~Ia~r~gvs~~~l~~~n~~~~~~~~~~~L~~Gq~L~i~~~~ 60 (361)
T 2gu1_A 6 KRIHYMVKVGDTLSGIFAQLGVPYSILQKILSVDLDHLQLDMIQPGEELELMMDD 60 (361)
T ss_dssp -CEEEECCTTCCHHHHHHHTTCCHHHHHHHHHHGGGTCCGGGCCTTCEEEEEECT
T ss_pred CceEEEECCCCcHHHHHHHcCCCHHHHHHHHhhcccccchhcCCCCCEEEEEECC
Confidence 47889999999999999999999999999999753 2579999999999753
No 10
>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A*
Probab=98.40 E-value=3e-07 Score=77.61 Aligned_cols=47 Identities=19% Similarity=0.439 Sum_probs=42.1
Q ss_pred eEEEEccCCCcHHHHHHHhCCCHHHHHHHhCCCCCcCccCCCEEEecC
Q 024891 116 AISHRLARGDTVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPI 163 (261)
Q Consensus 116 ~~~h~V~~GDTL~~IA~rYgvsv~~I~~~N~L~s~~~i~~gq~L~IP~ 163 (261)
+++|+|++||||..||+||+++..+|+++|.... ..|.+|++|+||.
T Consensus 2 ~~~y~V~~GdtL~~IA~~f~~g~~~l~~aNp~vd-~~l~~g~~i~ip~ 48 (165)
T 4a1k_A 2 MLTYQVKQGDTLNSIAADFRISTAALLQANPSLQ-AGLTAGQSIVIPG 48 (165)
T ss_dssp CEEEECCTTCCHHHHHHHTTCCHHHHHHHCGGGG-GCCCTTCEEEETT
T ss_pred CEEEEECCCCCHHHHHHHhCCCHHHHHHhCccCC-CccCCCccccCcc
Confidence 5789999999999999999999999999997543 3578999999995
No 11
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=98.27 E-value=5.5e-07 Score=84.27 Aligned_cols=113 Identities=15% Similarity=0.060 Sum_probs=72.4
Q ss_pred CCCcccHHHHHHhc--CCHHHHHHhhhhhhhhhhhcc-----chhhHHHhhcCcccccccc----c--cCC---------
Q 024891 45 ALACPDTLRLILSN--LSVTDLARASCVCRAWSSVAS-----DNNMIVLAFMAPWKLKEVV----G--MPL--------- 102 (261)
Q Consensus 45 ~lp~~D~L~~Il~r--L~p~~Lara~cVCk~W~~~~~-----~~~l~~aAF~aPWkl~~vv----g--sP~--------- 102 (261)
.+.+||+|+.||++ +++.+| +.|+.+.. +....++.+..|-.-.... . ++.
T Consensus 11 ~Vk~GDTL~~Ia~r~gvs~~~l-------~~~n~~~~~~~~~~~L~~Gq~L~i~~~~~~~l~~l~~~~~~~~~~~~~~~~ 83 (361)
T 2gu1_A 11 MVKVGDTLSGIFAQLGVPYSIL-------QKILSVDLDHLQLDMIQPGEELELMMDDMGQLSRLIYHMSIVEKAIYTREN 83 (361)
T ss_dssp ECCTTCCHHHHHHHTTCCHHHH-------HHHHHHGGGTCCGGGCCTTCEEEEEECTTSCEEEEEEEEETTEEEEEEECT
T ss_pred EECCCCcHHHHHHHcCCCHHHH-------HHHHhhcccccchhcCCCCCEEEEEECCCCcceEEEEEcCccceEEEEecC
Confidence 45669999999996 589999 77887753 2333444444432100000 0 000
Q ss_pred CCCccc---cCCCCcceEEEEccCCCcHHHHHHHhCCCHHHHHHHhCCCCC-----cCccCCCEEEecCC
Q 024891 103 NGSFWR---DNGIGKFAISHRLARGDTVASLAVKYSVQVMDIKRLNNMMSD-----HGIYSRERLLIPIS 164 (261)
Q Consensus 103 ~~s~~~---~~~~~~~~~~h~V~~GDTL~~IA~rYgvsv~~I~~~N~L~s~-----~~i~~gq~L~IP~~ 164 (261)
...+.. ..+.......|.|+.||||++||++||+++++|+++|++... ..|++|++|.|+..
T Consensus 84 ~g~f~~~~~~~~~~~~~~~~~v~igdSL~~iA~~~Gvs~~~i~~ln~i~~~~idf~~~Lr~GD~l~V~~~ 153 (361)
T 2gu1_A 84 DGSFSYDFQEISGEWREILFSGEINGSFSVSARRVGLTSSQVANITQVMKDKIDFSRSLRAGDRFDILVK 153 (361)
T ss_dssp TSCEEEEEEECCCEEEEEEEEEESSSCHHHHHHHTTCCHHHHHHHHHHHTTTCCTTTCCCC-CEEEEEEE
T ss_pred CCcceeeecccCceEEEEEEEEEECCcHHHHHHHcCCCHHHHHHHHHhhcccccccccCCCCCEEEEEEE
Confidence 000000 001111235688999999999999999999999999998653 45999999999864
No 12
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.08 E-value=9.5e-07 Score=80.33 Aligned_cols=47 Identities=30% Similarity=0.405 Sum_probs=43.9
Q ss_pred ccCCCccc----HHHHHHhcCCHHHHHHhhhhhhhhhhhccchhhHHHhhcC
Q 024891 43 FSALACPD----TLRLILSNLSVTDLARASCVCRAWSSVASDNNMIVLAFMA 90 (261)
Q Consensus 43 ~~~lp~~D----~L~~Il~rL~p~~Lara~cVCk~W~~~~~~~~l~~aAF~a 90 (261)
+..|| .| +|..||+.|++++|+++++|||.|+.+++++.||+..|..
T Consensus 11 ~~~lp-~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~ 61 (435)
T 1p22_A 11 ITALP-ARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIER 61 (435)
T ss_dssp HHHTG-GGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHh
Confidence 46799 99 9999999999999999999999999999999999997764
No 13
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.04 E-value=1.4e-06 Score=79.00 Aligned_cols=48 Identities=13% Similarity=0.269 Sum_probs=44.2
Q ss_pred ccCCCcccHHHHHHhcCCHHHHHHhhhhhhhhhhhccc-hhhHHHhhcCc
Q 024891 43 FSALACPDTLRLILSNLSVTDLARASCVCRAWSSVASD-NNMIVLAFMAP 91 (261)
Q Consensus 43 ~~~lp~~D~L~~Il~rL~p~~Lara~cVCk~W~~~~~~-~~l~~aAF~aP 91 (261)
+..|| .|+|.+||+.|++++|.++++|||.|+.++.+ +.+|+..|...
T Consensus 15 ~~~lp-~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~ 63 (464)
T 3v7d_B 15 ITSLP-FEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISE 63 (464)
T ss_dssp HHHSC-HHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHT
T ss_pred hHHCC-HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcc
Confidence 57899 99999999999999999999999999999998 89999987543
No 14
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.02 E-value=3.7e-06 Score=76.27 Aligned_cols=47 Identities=30% Similarity=0.372 Sum_probs=44.6
Q ss_pred ccCCCcccHHHHHHhcCCHHHHHHhhhhhhhhhhhccchhhHHHhhcC
Q 024891 43 FSALACPDTLRLILSNLSVTDLARASCVCRAWSSVASDNNMIVLAFMA 90 (261)
Q Consensus 43 ~~~lp~~D~L~~Il~rL~p~~Lara~cVCk~W~~~~~~~~l~~aAF~a 90 (261)
+..|| .|+|..||..|++++|+++++|||.|+.++.++.+|+..|..
T Consensus 19 ~~~lp-~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~ 65 (445)
T 2ovr_B 19 ISLLP-KELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKE 65 (445)
T ss_dssp TTSSC-HHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTT
T ss_pred hHHCC-HHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheee
Confidence 67999 999999999999999999999999999999999999998764
No 15
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.64 E-value=1.8e-05 Score=69.75 Aligned_cols=45 Identities=29% Similarity=0.501 Sum_probs=41.2
Q ss_pred CcccCCCcccHHHHHHhcCCHHHHHHhhhhhhhhhhhccchhhHHH
Q 024891 41 SHFSALACPDTLRLILSNLSVTDLARASCVCRAWSSVASDNNMIVL 86 (261)
Q Consensus 41 ~~~~~lp~~D~L~~Il~rL~p~~Lara~cVCk~W~~~~~~~~l~~a 86 (261)
..+..|| +|+|.+||+.|+.+++.+++.|||.|+.++.++.+|+.
T Consensus 7 ~~~~~LP-~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~ 51 (336)
T 2ast_B 7 VSWDSLP-DELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQT 51 (336)
T ss_dssp CCSSSSC-HHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSE
T ss_pred CChhhCC-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhhee
Confidence 3478999 99999999999999999999999999999988887765
No 16
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}
Probab=97.49 E-value=8.9e-07 Score=75.08 Aligned_cols=91 Identities=13% Similarity=0.019 Sum_probs=64.3
Q ss_pred ccCCCcccHHHHHHhcC--CHHHHHHhhhhhhhhhhhcc-chhhHHHhhcCccccccccccCC-CCCccccCCCCcceEE
Q 024891 43 FSALACPDTLRLILSNL--SVTDLARASCVCRAWSSVAS-DNNMIVLAFMAPWKLKEVVGMPL-NGSFWRDNGIGKFAIS 118 (261)
Q Consensus 43 ~~~lp~~D~L~~Il~rL--~p~~Lara~cVCk~W~~~~~-~~~l~~aAF~aPWkl~~vvgsP~-~~s~~~~~~~~~~~~~ 118 (261)
+.--+ ||+|+.|.++. ..++| +.||.+.+ +.+..++.+..|..-. .+. ...+ . ......
T Consensus 65 y~V~~-GDTL~~IA~~~~~~~~~l-------~~~N~~~~~~~i~~Gq~L~ip~~~~----~~~~~~~~----~-~~~~~~ 127 (167)
T 2l9y_A 65 VTVQQ-GDTLRDIGRRFDCDFHEI-------ARRNNIQNEDLIYPGQVLQVPTKGG----SGGGAGNF----W-DSARDV 127 (167)
T ss_dssp EEECT-TCCHHHHHHHTTCCHHHH-------HHHHTCCGGGCCCTTEEEEESCCCC----CSSSSCCG----G-GGEEEE
T ss_pred EEECC-CCcHHHHHHHcCCCHHHH-------HHHcCCCCcccccCCCEEEEcCCCC----cccccccc----c-cccceE
Confidence 44445 99999999965 77888 78998876 4566778887776411 110 0111 0 112357
Q ss_pred EEccCCCcHHHHHHHhCCCHHHHHHHhCCCCC
Q 024891 119 HRLARGDTVASLAVKYSVQVMDIKRLNNMMSD 150 (261)
Q Consensus 119 h~V~~GDTL~~IA~rYgvsv~~I~~~N~L~s~ 150 (261)
|.|++||||++||.+||.+++.+..+|+...+
T Consensus 128 ~~v~~GdtL~aIA~r~G~~v~s~i~Ln~~I~N 159 (167)
T 2l9y_A 128 RLVDGGKVLEAELRYSGGWNRSRIYLDEHIGN 159 (167)
T ss_dssp EEETTTTEEEEEEEETTEEEEEEECGGGTEEE
T ss_pred EEeCCcCChHHHHHHcCCceEEEEEcccccCc
Confidence 99999999999999999999888888865443
No 17
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=97.17 E-value=0.00058 Score=45.40 Aligned_cols=37 Identities=19% Similarity=0.413 Sum_probs=30.1
Q ss_pred HHHHHhhhhccCHHHHHHHHHhcCCCHHHHHHHHHhh
Q 024891 215 IINSLRRSMQVDDETAQYYLSISNGNLRAALSEFSAD 251 (261)
Q Consensus 215 l~~~~~r~m~~D~~~A~~YL~~a~~d~~~Av~~~~~D 251 (261)
+++.+.-.-..+.++|+.||+.++||++.||..|.++
T Consensus 8 ~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~~ 44 (46)
T 1v92_A 8 ALREFVAVTGAEEDRARFFLESAGWDLQIALASFYED 44 (46)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHHT
T ss_pred HHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 3344444555899999999999999999999999764
No 18
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.02 E-value=0.00091 Score=48.71 Aligned_cols=37 Identities=14% Similarity=0.084 Sum_probs=30.9
Q ss_pred HHHHHhhhhc-cCHHHHHHHHHhcCCCHHHHHHHHHhh
Q 024891 215 IINSLRRSMQ-VDDETAQYYLSISNGNLRAALSEFSAD 251 (261)
Q Consensus 215 l~~~~~r~m~-~D~~~A~~YL~~a~~d~~~Av~~~~~D 251 (261)
+++.+..... .|.++|+.||+.++||++.||..|.++
T Consensus 21 ~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~ 58 (67)
T 2dam_A 21 KLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNE 58 (67)
T ss_dssp HHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4444555555 899999999999999999999999875
No 19
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=96.96 E-value=0.00054 Score=46.54 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=28.5
Q ss_pred HHHHHHhhhhccCH-HHHHHHHHhcCCCHHHHHHHHH
Q 024891 214 RIINSLRRSMQVDD-ETAQYYLSISNGNLRAALSEFS 249 (261)
Q Consensus 214 kl~~~~~r~m~~D~-~~A~~YL~~a~~d~~~Av~~~~ 249 (261)
.++..+...-++|. ++|+.||+.+|||++.||..|.
T Consensus 7 e~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f~ 43 (45)
T 3e21_A 7 MILADFQACTGIENIDEAITLLEQNNWDLVAAINGVI 43 (45)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC-
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHHc
Confidence 44555666566776 9999999999999999998763
No 20
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.92 E-value=0.0013 Score=47.00 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=29.5
Q ss_pred HHHHhhhhccCHHHHHHHHHhcCCCHHHHHHHHHhh
Q 024891 216 INSLRRSMQVDDETAQYYLSISNGNLRAALSEFSAD 251 (261)
Q Consensus 216 ~~~~~r~m~~D~~~A~~YL~~a~~d~~~Av~~~~~D 251 (261)
++.+.-....+..+|+.||+.++||++.||..|.+.
T Consensus 19 i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~~ 54 (62)
T 2dal_A 19 IQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDG 54 (62)
T ss_dssp HHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 333444445899999999999999999999999764
No 21
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis}
Probab=96.86 E-value=0.0019 Score=61.04 Aligned_cols=53 Identities=9% Similarity=0.233 Sum_probs=44.8
Q ss_pred CcceEEEEccCCCcHHHHHHHhCCCHHHHHHHhCCC----CCcCccCCCEEEecCCC
Q 024891 113 GKFAISHRLARGDTVASLAVKYSVQVMDIKRLNNMM----SDHGIYSRERLLIPISS 165 (261)
Q Consensus 113 ~~~~~~h~V~~GDTL~~IA~rYgvsv~~I~~~N~L~----s~~~i~~gq~L~IP~~~ 165 (261)
...|..|+|++||||.+|-.++|++..+|.++++.. .-..|++||.|.|....
T Consensus 11 ~~~W~~~~V~~GDTL~~IL~r~Gls~~di~~i~~~~~~~~~l~~LrpGq~l~i~~~~ 67 (371)
T 3slu_A 11 TAYWVQEAVQPGDSLADVLARSGMARDEIARITEKYGGEADLRHLRADQSVHVLVGG 67 (371)
T ss_dssp CCEEEEEECCTTCCHHHHHHHTTCCHHHHHHHHTTC------CCBCSSSEEEEEECT
T ss_pred CCceEEEEECCCCcHHHHHHHcCCCHHHHHHHHHhccccCchhhCCCCCEEEEEECC
Confidence 347899999999999999999999999999998653 23579999999997653
No 22
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.78 E-value=0.0005 Score=64.89 Aligned_cols=34 Identities=21% Similarity=0.444 Sum_probs=29.5
Q ss_pred ccCCCcccHHHHHHhcCC-HHHHHHhhhhhhhhhhh
Q 024891 43 FSALACPDTLRLILSNLS-VTDLARASCVCRAWSSV 77 (261)
Q Consensus 43 ~~~lp~~D~L~~Il~rL~-p~~Lara~cVCk~W~~~ 77 (261)
++.|| +|+|..||++|+ ++++.+++.|||.|+.+
T Consensus 6 ~~~LP-devL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 6 ALSFP-EEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp ----C-HHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred hhhCC-HHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 67899 999999999999 99999999999999988
No 23
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.75 E-value=0.0013 Score=47.82 Aligned_cols=37 Identities=22% Similarity=0.295 Sum_probs=30.2
Q ss_pred HHHHHhhhhccCHHHHHHHHHhcCCCHHHHHHHHHhh
Q 024891 215 IINSLRRSMQVDDETAQYYLSISNGNLRAALSEFSAD 251 (261)
Q Consensus 215 l~~~~~r~m~~D~~~A~~YL~~a~~d~~~Av~~~~~D 251 (261)
+++.+.-....+..+|+.||+.++||++.||..|.++
T Consensus 20 ~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~~ 56 (66)
T 2dzl_A 20 MINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQE 56 (66)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 3334444455999999999999999999999999875
No 24
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.10 E-value=0.0024 Score=60.29 Aligned_cols=32 Identities=28% Similarity=0.554 Sum_probs=30.9
Q ss_pred CCCcccHHHHHHhcC-CHHHHHHhhhhhhhhhhh
Q 024891 45 ALACPDTLRLILSNL-SVTDLARASCVCRAWSSV 77 (261)
Q Consensus 45 ~lp~~D~L~~Il~rL-~p~~Lara~cVCk~W~~~ 77 (261)
.|| +|+|..||+.| +++++.+++.|||.|+.+
T Consensus 15 ~LP-deil~~I~~~L~~~~d~~~~s~vck~W~~~ 47 (592)
T 3ogk_B 15 ATV-DDVIEQVMTYITDPKDRDSASLVCRRWFKI 47 (592)
T ss_dssp CCG-GGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred CCC-HHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence 699 99999999999 899999999999999988
No 25
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=93.31 E-value=0.19 Score=35.49 Aligned_cols=42 Identities=12% Similarity=0.123 Sum_probs=34.5
Q ss_pred hHHHHHHHhhhhccCHHHHHHHHHhcCCCHHHHHHHHHhhHH
Q 024891 212 RRRIINSLRRSMQVDDETAQYYLSISNGNLRAALSEFSADLE 253 (261)
Q Consensus 212 k~kl~~~~~r~m~~D~~~A~~YL~~a~~d~~~Av~~~~~D~~ 253 (261)
+..++..+..--++..+=++-+|+.++||+++|+..|.+...
T Consensus 7 q~~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~l~~ 48 (59)
T 1oai_A 7 QQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTHLKA 48 (59)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 345666666666788899999999999999999999987653
No 26
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=93.31 E-value=0.13 Score=36.21 Aligned_cols=39 Identities=21% Similarity=0.276 Sum_probs=32.4
Q ss_pred hHHHHHHHhhhhccCHHHHHHHHHhcCCCHHHHHHHHHh
Q 024891 212 RRRIINSLRRSMQVDDETAQYYLSISNGNLRAALSEFSA 250 (261)
Q Consensus 212 k~kl~~~~~r~m~~D~~~A~~YL~~a~~d~~~Av~~~~~ 250 (261)
+..|+..+..--++..+=++-+|+.++||+++|+..|.+
T Consensus 6 q~~mv~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~~F~~ 44 (57)
T 2jp7_A 6 QLELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGFQS 44 (57)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 345666666666688889999999999999999999986
No 27
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=92.99 E-value=0.12 Score=46.90 Aligned_cols=38 Identities=21% Similarity=0.312 Sum_probs=31.4
Q ss_pred HHHHHhhhhccCHHHHHHHHHhcCCCHHHHHHHHHhhH
Q 024891 215 IINSLRRSMQVDDETAQYYLSISNGNLRAALSEFSADL 252 (261)
Q Consensus 215 l~~~~~r~m~~D~~~A~~YL~~a~~d~~~Av~~~~~D~ 252 (261)
+++.+....+.+..+|+.||+.++||++.|+..|-++.
T Consensus 18 ~i~qF~~iTg~~~~~A~~~L~~~~WdLe~Al~~ff~~~ 55 (270)
T 3bq3_A 18 AIESFTSLTKCDPKVSRKYLQRNHWNINYALNDYYDKE 55 (270)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCc
Confidence 34445555569999999999999999999999998764
No 28
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=86.55 E-value=0.5 Score=43.30 Aligned_cols=33 Identities=24% Similarity=0.217 Sum_probs=29.0
Q ss_pred HhhhhccCHHHHHHHHHhcCCCHHHHHHHHHhh
Q 024891 219 LRRSMQVDDETAQYYLSISNGNLRAALSEFSAD 251 (261)
Q Consensus 219 ~~r~m~~D~~~A~~YL~~a~~d~~~Av~~~~~D 251 (261)
+.-.-..|...|+.||...+||+++|+..|.+-
T Consensus 52 f~~~~~~~~~~~~~~l~~~~w~~~~~~~~~~~~ 84 (362)
T 4gew_A 52 FAIITATDEAFAQSILQDVDWDLKKALDVFYGS 84 (362)
T ss_dssp HHHHHTCCHHHHHHHTTSSSSCHHHHHHHHHHC
T ss_pred HHHHhCCcHHHHHHHHhhcCchHHHHHHHHcCC
Confidence 555566999999999999999999999999843
No 29
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=80.97 E-value=0.81 Score=36.01 Aligned_cols=30 Identities=13% Similarity=0.156 Sum_probs=27.4
Q ss_pred hccCHHHHHHHHHhcCCCHHHHHHHHHhhH
Q 024891 223 MQVDDETAQYYLSISNGNLRAALSEFSADL 252 (261)
Q Consensus 223 m~~D~~~A~~YL~~a~~d~~~Av~~~~~D~ 252 (261)
-.++.+.|+.-|...+||+.+||..+.+..
T Consensus 50 tG~seeeAr~AL~~~ngDl~~AI~~Lleg~ 79 (104)
T 1wj7_A 50 TGKNQDECVIALHDCNGDVNRAINVLLEGN 79 (104)
T ss_dssp TCCCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred hCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 358999999999999999999999998765
No 30
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=80.33 E-value=2 Score=26.84 Aligned_cols=26 Identities=35% Similarity=0.328 Sum_probs=23.5
Q ss_pred hccCHHHHHHHHHhcCCCHHHHHHHH
Q 024891 223 MQVDDETAQYYLSISNGNLRAALSEF 248 (261)
Q Consensus 223 m~~D~~~A~~YL~~a~~d~~~Av~~~ 248 (261)
|+.+.+.|+..|..++||++.|+..+
T Consensus 14 mGf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 14 MGFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp TTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 67899999999999999999999754
No 31
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=74.43 E-value=9.1 Score=25.81 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=23.9
Q ss_pred hhcc-CHHHHHHHHHhcCCCHHHHHHHH
Q 024891 222 SMQV-DDETAQYYLSISNGNLRAALSEF 248 (261)
Q Consensus 222 ~m~~-D~~~A~~YL~~a~~d~~~Av~~~ 248 (261)
.|+. |.+.|+.-|..++||++.|+...
T Consensus 21 ~MGF~~~~~~~~AL~~t~gn~e~A~e~L 48 (52)
T 2jy5_A 21 AMGFLNREANLQALIATGGDINAAIERL 48 (52)
T ss_dssp HTTCCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 5676 99999999999999999999764
No 32
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=72.57 E-value=6 Score=28.35 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=31.6
Q ss_pred HHHHHhhhhccCHHHHHHHHHhcCCCHHHHHHHHHhh
Q 024891 215 IINSLRRSMQVDDETAQYYLSISNGNLRAALSEFSAD 251 (261)
Q Consensus 215 l~~~~~r~m~~D~~~A~~YL~~a~~d~~~Av~~~~~D 251 (261)
++..||.--.+.+..++-=|+.++||+++|+...++-
T Consensus 12 ~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 12 LLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3455777788999999999999999999999987753
No 33
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=71.96 E-value=12 Score=25.20 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=24.5
Q ss_pred hhcc-CHHHHHHHHHhcCCCHHHHHHHHH
Q 024891 222 SMQV-DDETAQYYLSISNGNLRAALSEFS 249 (261)
Q Consensus 222 ~m~~-D~~~A~~YL~~a~~d~~~Av~~~~ 249 (261)
.|+. |.+.|+.-|..++||++.|+....
T Consensus 20 ~MGF~~~~~~~~AL~~t~gnve~Ave~L~ 48 (53)
T 2knz_A 20 SMGFINREANLQALIATGGDINAAIERLL 48 (53)
T ss_dssp TTTCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 5676 999999999999999999998654
No 34
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=70.49 E-value=2.6 Score=34.25 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=21.9
Q ss_pred ccCCCcHHHHHHHhCCCHHHH----HHHhC
Q 024891 121 LARGDTVASLAVKYSVQVMDI----KRLNN 146 (261)
Q Consensus 121 V~~GDTL~~IA~rYgvsv~~I----~~~N~ 146 (261)
+.++|||..||.+.||+++.| .++|.
T Consensus 92 ~~kadTleeLA~~~gid~~~L~~TV~~yN~ 121 (160)
T 2lfc_A 92 VFVKGSLESAAEQAGIVVDELVQTVKNYQG 121 (160)
T ss_dssp SEECSSHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred eEecCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 678999999999999998865 45674
No 35
>2l2d_A OTU domain-containing protein 7A; UBA fold, structural genomics, PSI-biology, protein structur initiative, northeast structural genomics consortium; NMR {Homo sapiens}
Probab=69.30 E-value=8.7 Score=27.88 Aligned_cols=36 Identities=28% Similarity=0.354 Sum_probs=30.8
Q ss_pred HHHHHhhhhccCHHHHHHHHHhcCCCHHHHHHHHHh
Q 024891 215 IINSLRRSMQVDDETAQYYLSISNGNLRAALSEFSA 250 (261)
Q Consensus 215 l~~~~~r~m~~D~~~A~~YL~~a~~d~~~Av~~~~~ 250 (261)
++--+-|+...+.+.|+--|+--+||+.+|+..|.+
T Consensus 20 vls~fvrstgaepgLaRDlleGKnWDl~AAL~D~eq 55 (73)
T 2l2d_A 20 VLSDFVRSTGAEPGLARDLLEGKNWDLTAALSDYEQ 55 (73)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcchhHHhhccCCccHhHHhhhHHH
Confidence 444466778899999999999999999999999964
No 36
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=68.53 E-value=13 Score=33.40 Aligned_cols=44 Identities=18% Similarity=0.337 Sum_probs=37.2
Q ss_pred HHHHhhhhc-------cCHHHHHHHHHhcCCCHHHHHHHHHhhHHHHhhcc
Q 024891 216 INSLRRSMQ-------VDDETAQYYLSISNGNLRAALSEFSADLEWERQGA 259 (261)
Q Consensus 216 ~~~~~r~m~-------~D~~~A~~YL~~a~~d~~~Av~~~~~D~~WE~~~~ 259 (261)
++.||.++. .|+..-.-||--.+||+++|.+.+.+=++|.++.+
T Consensus 43 l~~lR~~l~~~~~~~~~dD~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~ 93 (320)
T 3q8g_A 43 LLQFRSILLEKNYKERLDDSTLLRFLRARKFDINASVEMFVETERWREEYG 93 (320)
T ss_dssp HHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC
Confidence 445555543 88999999999999999999999999999988765
No 37
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.70 E-value=18 Score=25.94 Aligned_cols=32 Identities=13% Similarity=0.176 Sum_probs=27.7
Q ss_pred HhhhhccCHHHHHHHHHhcCCCHHHHHHHHHh
Q 024891 219 LRRSMQVDDETAQYYLSISNGNLRAALSEFSA 250 (261)
Q Consensus 219 ~~r~m~~D~~~A~~YL~~a~~d~~~Av~~~~~ 250 (261)
-.-|-.+|..+.++=|..+++|++.||....+
T Consensus 26 ~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ 57 (67)
T 2dhy_A 26 KTMFPNMDYDIIECVLRANSGAVDATIDQLLQ 57 (67)
T ss_dssp HHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 33477799999999999999999999998764
No 38
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=60.58 E-value=8.2 Score=26.17 Aligned_cols=32 Identities=13% Similarity=0.080 Sum_probs=27.0
Q ss_pred HhhhhccCHHHHHHHHHhcCCCHHHHHHHHHh
Q 024891 219 LRRSMQVDDETAQYYLSISNGNLRAALSEFSA 250 (261)
Q Consensus 219 ~~r~m~~D~~~A~~YL~~a~~d~~~Av~~~~~ 250 (261)
.-=|-.+|..+++.=|+.++||+++|+....+
T Consensus 12 ~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~ 43 (49)
T 1otr_A 12 MDMFPAISKSKLQVHLLENNNDLDLTIGLLLK 43 (49)
T ss_dssp HHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 34466799999999999999999999987643
No 39
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=59.08 E-value=5.4 Score=26.75 Aligned_cols=26 Identities=15% Similarity=0.242 Sum_probs=22.2
Q ss_pred ccCCCc----HHHHHHHhCCCHHHHHHHhC
Q 024891 121 LARGDT----VASLAVKYSVQVMDIKRLNN 146 (261)
Q Consensus 121 V~~GDT----L~~IA~rYgvsv~~I~~~N~ 146 (261)
+..|.+ +..||.+|||+...|.++=+
T Consensus 18 ~~~g~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 18 YRNDNDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp HHHCTTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred HHcCCCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 456778 99999999999999988743
No 40
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=57.48 E-value=33 Score=29.80 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=32.1
Q ss_pred cCHHHHHHHHHhcCCCHHHHHHHHHhhHHHHhhc
Q 024891 225 VDDETAQYYLSISNGNLRAALSEFSADLEWERQG 258 (261)
Q Consensus 225 ~D~~~A~~YL~~a~~d~~~Av~~~~~D~~WE~~~ 258 (261)
.|.....-||.-.+||+++|.+.+.+=++|.+++
T Consensus 50 ~dd~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~ 83 (296)
T 1aua_A 50 LDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDY 83 (296)
T ss_dssp CSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHc
Confidence 7899999999999999999999999999998876
No 41
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
Probab=57.24 E-value=2.2 Score=37.65 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHhhhhccCHHHHHHHHHhcCCCHHHHHHHHHhhH
Q 024891 214 RIINSLRRSMQVDDETAQYYLSISNGNLRAALSEFSADL 252 (261)
Q Consensus 214 kl~~~~~r~m~~D~~~A~~YL~~a~~d~~~Av~~~~~D~ 252 (261)
.++..+..--++..+=++-+|+.+|||+++|+..|.+-.
T Consensus 200 ~~v~~~~~~T~mn~~~s~~cL~~~~Wd~~~A~~~F~~l~ 238 (250)
T 1jkg_B 200 EMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTHLK 238 (250)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 344445444457788889999999999999999998754
No 42
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=53.29 E-value=30 Score=23.93 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=25.2
Q ss_pred HHHhhhhc-cCHHHHHHHHHhcCCCHHHHHHHHH
Q 024891 217 NSLRRSMQ-VDDETAQYYLSISNGNLRAALSEFS 249 (261)
Q Consensus 217 ~~~~r~m~-~D~~~A~~YL~~a~~d~~~Av~~~~ 249 (261)
+.|+ .|. .|.+.++.-|..++||+++|++...
T Consensus 22 ~~L~-~MGF~d~~~~~~AL~~~~gnve~Ave~L~ 54 (58)
T 1wr1_B 22 RQLN-DMGFFDFDRNVAALRRSGGSVQGALDSLL 54 (58)
T ss_dssp HHHH-HHTCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHH-HcCCCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3343 466 5788889999999999999998654
No 43
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=51.22 E-value=37 Score=23.55 Aligned_cols=32 Identities=22% Similarity=0.217 Sum_probs=27.6
Q ss_pred HhhhhccCHHHHHHHHHhcCCCHHHHHHHHHh
Q 024891 219 LRRSMQVDDETAQYYLSISNGNLRAALSEFSA 250 (261)
Q Consensus 219 ~~r~m~~D~~~A~~YL~~a~~d~~~Av~~~~~ 250 (261)
..-|-.+|..+.+.-|..+++|++.||....+
T Consensus 17 ~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 17 QDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp HHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 33477799999999999999999999988754
No 44
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=50.88 E-value=62 Score=23.53 Aligned_cols=28 Identities=14% Similarity=0.313 Sum_probs=23.7
Q ss_pred hhc-cCHHHHHHHHHhcCCCHHHHHHHHH
Q 024891 222 SMQ-VDDETAQYYLSISNGNLRAALSEFS 249 (261)
Q Consensus 222 ~m~-~D~~~A~~YL~~a~~d~~~Av~~~~ 249 (261)
-|. .|.+.++.-|..++||+++||+...
T Consensus 38 eMGF~dr~~~~~AL~~t~Gnve~Ave~L~ 66 (74)
T 1vej_A 38 ALGFANRDANLQALVATDGDIHAAIEMLL 66 (74)
T ss_dssp HHTCCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HcCCCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 466 4788889999999999999998764
No 45
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=50.34 E-value=16 Score=21.95 Aligned_cols=25 Identities=12% Similarity=-0.068 Sum_probs=21.9
Q ss_pred ccCCCcHHHHHHHhCCCHHHHHHHh
Q 024891 121 LARGDTVASLAVKYSVQVMDIKRLN 145 (261)
Q Consensus 121 V~~GDTL~~IA~rYgvsv~~I~~~N 145 (261)
...|-|...||..+||+...+.++=
T Consensus 18 ~~~g~s~~~IA~~lgis~~Tv~~~~ 42 (51)
T 1tc3_C 18 KLLNVSLHEMSRKISRSRHCIRVYL 42 (51)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 3578899999999999999998874
No 46
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=48.77 E-value=19 Score=27.00 Aligned_cols=29 Identities=24% Similarity=0.284 Sum_probs=26.0
Q ss_pred hhccCHHHHHHHHHhcCCCHHHHHHHHHh
Q 024891 222 SMQVDDETAQYYLSISNGNLRAALSEFSA 250 (261)
Q Consensus 222 ~m~~D~~~A~~YL~~a~~d~~~Av~~~~~ 250 (261)
.|+.|.+.|+.-|..++||++.|+.....
T Consensus 38 ~MGF~~~~A~~AL~~t~gdve~A~e~L~s 66 (83)
T 1veg_A 38 YMGFDTVVAEAALRVFGGNVQLAAQTLAH 66 (83)
T ss_dssp HHSCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 46799999999999999999999987765
No 47
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=48.31 E-value=13 Score=29.64 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=20.3
Q ss_pred CCCcHHHHHHHhCCCHHHHHHH
Q 024891 123 RGDTVASLAVKYSVQVMDIKRL 144 (261)
Q Consensus 123 ~GDTL~~IA~rYgvsv~~I~~~ 144 (261)
.|.++..||.+||+|...|.++
T Consensus 91 ~G~n~~eLArkYgLSer~I~~I 112 (129)
T 1rr7_A 91 NGRNVSELTTRYGVTFNTVYKA 112 (129)
T ss_dssp CSSCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHH
Confidence 3899999999999999999886
No 48
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=47.98 E-value=12 Score=27.11 Aligned_cols=24 Identities=13% Similarity=0.268 Sum_probs=21.3
Q ss_pred cC-CCcHHHHHHHhCCCHHHHHHHh
Q 024891 122 AR-GDTVASLAVKYSVQVMDIKRLN 145 (261)
Q Consensus 122 ~~-GDTL~~IA~rYgvsv~~I~~~N 145 (261)
.. |-|+..||.+|||+...|.++=
T Consensus 20 ~~~g~s~~~ia~~~gIs~~tl~rW~ 44 (97)
T 2jn6_A 20 NSDGASLQQIANDLGINRVTLKNWI 44 (97)
T ss_dssp TGGGSCHHHHHHHHTSCHHHHHHHH
T ss_pred HcCCChHHHHHHHHCcCHHHHHHHH
Confidence 35 8899999999999999998874
No 49
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=47.93 E-value=19 Score=26.24 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=25.4
Q ss_pred hhccCHHHHHHHHHhcCCCHHHHHHHHHh
Q 024891 222 SMQVDDETAQYYLSISNGNLRAALSEFSA 250 (261)
Q Consensus 222 ~m~~D~~~A~~YL~~a~~d~~~Av~~~~~ 250 (261)
.|..|.+.|+.=|..++||++.|+.....
T Consensus 38 eMGF~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 38 AMGFDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp TTTCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 37799999999999999999999976543
No 50
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=47.93 E-value=22 Score=24.23 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=23.2
Q ss_pred hhcc-CHHHHHHHHHhcCCCHHHHHHHHH
Q 024891 222 SMQV-DDETAQYYLSISNGNLRAALSEFS 249 (261)
Q Consensus 222 ~m~~-D~~~A~~YL~~a~~d~~~Av~~~~ 249 (261)
.|.. |...++.-|..++||+++||....
T Consensus 18 ~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~ 46 (54)
T 2dah_A 18 SMGFLNREANLQALIATGGDVDAAVEKLR 46 (54)
T ss_dssp HHTCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HcCCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5564 667779999999999999998765
No 51
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=47.72 E-value=18 Score=23.98 Aligned_cols=28 Identities=25% Similarity=0.141 Sum_probs=24.5
Q ss_pred hhccCHHHHHHHHHhcCCCHHHHHHHHH
Q 024891 222 SMQVDDETAQYYLSISNGNLRAALSEFS 249 (261)
Q Consensus 222 ~m~~D~~~A~~YL~~a~~d~~~Av~~~~ 249 (261)
.|+.+.+.|+.=|..++||++.|+....
T Consensus 17 ~MGF~~~~a~~AL~~~~~n~e~A~e~L~ 44 (49)
T 1ify_A 17 SMGYERERVVAALRASYNNPHRAVEYLL 44 (49)
T ss_dssp HTTCCHHHHHHHHHTTTSCSHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4678999999999999999999997654
No 52
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=47.29 E-value=15 Score=26.43 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=21.1
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHH
Q 024891 122 ARGDTVASLAVKYSVQVMDIKRL 144 (261)
Q Consensus 122 ~~GDTL~~IA~rYgvsv~~I~~~ 144 (261)
..|.|+..||.+|||+...|.++
T Consensus 36 ~~g~s~~~iA~~~gIs~sTl~rW 58 (87)
T 2elh_A 36 HDGESKASVARDIGVPESTLRGW 58 (87)
T ss_dssp HHTCCHHHHHHHHTCCHHHHHHH
T ss_pred HCCCCHHHHHHHHCcCHHHHHHH
Confidence 57899999999999999999876
No 53
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=45.41 E-value=26 Score=22.22 Aligned_cols=28 Identities=29% Similarity=0.228 Sum_probs=24.0
Q ss_pred hhccCHHHHHHHHHhcCCCHHHHHHHHH
Q 024891 222 SMQVDDETAQYYLSISNGNLRAALSEFS 249 (261)
Q Consensus 222 ~m~~D~~~A~~YL~~a~~d~~~Av~~~~ 249 (261)
.|+.+.+.|+.=|..++||++.|+....
T Consensus 13 ~MGF~~~~a~~AL~~~~~n~e~A~~~L~ 40 (43)
T 2g3q_A 13 GMGFTEEEAHNALEKCNWDLEAATNFLL 40 (43)
T ss_dssp TTTSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHhCcCHHHHHHHHH
Confidence 3778999999999999999999987543
No 54
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=45.00 E-value=14 Score=22.79 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=21.6
Q ss_pred ccCCCcHHHHHHHhCCCHHHHHHH
Q 024891 121 LARGDTVASLAVKYSVQVMDIKRL 144 (261)
Q Consensus 121 V~~GDTL~~IA~rYgvsv~~I~~~ 144 (261)
+..|-|+..||..+||+...|.++
T Consensus 18 ~~~g~s~~~ia~~lgvs~~Tv~r~ 41 (52)
T 1jko_C 18 LEKGHPRQQLAIIFGIGVSTLYRY 41 (52)
T ss_dssp HHTTCCHHHHHHTTSCCHHHHHHH
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHH
Confidence 457889999999999999999887
No 55
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=44.59 E-value=17 Score=27.50 Aligned_cols=32 Identities=9% Similarity=0.017 Sum_probs=26.4
Q ss_pred EEEEccCCCcHHHHHHHhCCCHHHHHHHhCCC
Q 024891 117 ISHRLARGDTVASLAVKYSVQVMDIKRLNNMM 148 (261)
Q Consensus 117 ~~h~V~~GDTL~~IA~rYgvsv~~I~~~N~L~ 148 (261)
+.+....+.|+..+|.+|+|+.++|.++-...
T Consensus 42 V~~~~~g~~s~~e~arry~Is~s~i~~W~r~~ 73 (95)
T 2jrt_A 42 VKAVIHGLITEREALDRYSLSEEEFALWRSAV 73 (95)
T ss_dssp HHHHHTTSSCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 34555777899999999999999999997543
No 56
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.18 E-value=13 Score=26.20 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=28.9
Q ss_pred cCCCcccHHHHHHh--cCCHHHHHHhhhhhhhhhhhcc-chhhHHHhhcCc
Q 024891 44 SALACPDTLRLILS--NLSVTDLARASCVCRAWSSVAS-DNNMIVLAFMAP 91 (261)
Q Consensus 44 ~~lp~~D~L~~Il~--rL~p~~Lara~cVCk~W~~~~~-~~~l~~aAF~aP 91 (261)
-.+..||+|+.|++ .+++.+| +.||.+.. +....++.+..|
T Consensus 18 y~V~~GDTL~~IA~~~~~~~~~l-------~~~N~l~~~~~l~~Gq~l~iP 61 (77)
T 2djp_A 18 HQLEPGDTLAGLALKYGVTMEQI-------KRANRLYTNDSIFLKKTLYIP 61 (77)
T ss_dssp ECCCTTCCHHHHHHHHTCCHHHH-------HHHHTCCCSSCGGGSSCEEEE
T ss_pred EEECCCCcHHHHHHHHCcCHHHH-------HHHcCCCCccccCCCCEEEEC
Confidence 34555999999999 5688889 77898864 334445555554
No 57
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=42.66 E-value=43 Score=29.78 Aligned_cols=35 Identities=11% Similarity=0.039 Sum_probs=32.5
Q ss_pred cCHHHHHHHHHhcCCCHHHHHHHHHhhHHHHhhcc
Q 024891 225 VDDETAQYYLSISNGNLRAALSEFSADLEWERQGA 259 (261)
Q Consensus 225 ~D~~~A~~YL~~a~~d~~~Av~~~~~D~~WE~~~~ 259 (261)
.|+..-.-||.-.+||+++|.+.+..=+.|.++.+
T Consensus 90 ~dD~~LlRFLRarkfdv~kA~~~L~~~l~wR~~~~ 124 (316)
T 3hx3_A 90 KDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYP 124 (316)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCG
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCc
Confidence 48889999999999999999999999999998875
No 58
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=40.74 E-value=12 Score=30.82 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=19.4
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHH
Q 024891 122 ARGDTVASLAVKYSVQVMDIKRL 144 (261)
Q Consensus 122 ~~GDTL~~IA~rYgvsv~~I~~~ 144 (261)
.+=+.|.++++|||+++++|..+
T Consensus 129 ~RL~~l~~L~RKyg~~~eell~~ 151 (175)
T 4abx_A 129 ARLSALSKLKNKYGPTLEDVVEF 151 (175)
T ss_dssp HHHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHH
Confidence 44578999999999999999765
No 59
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=40.61 E-value=15 Score=26.78 Aligned_cols=42 Identities=7% Similarity=0.198 Sum_probs=29.3
Q ss_pred ccCC-CcHHHHHHHhCCCHHHHH-HHhCCCCCcCccCCCEEEec
Q 024891 121 LARG-DTVASLAVKYSVQVMDIK-RLNNMMSDHGIYSRERLLIP 162 (261)
Q Consensus 121 V~~G-DTL~~IA~rYgvsv~~I~-~~N~L~s~~~i~~gq~L~IP 162 (261)
|+.| =+...-|.+||||-..|. ++++..+.-...+...|.+|
T Consensus 26 Vr~g~mS~~~Aak~yGVP~sTL~~RVk~~~~~~~~~~~~~~~~~ 69 (70)
T 2cob_A 26 VMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKNPPKKKMKLM 69 (70)
T ss_dssp HHTTSSCHHHHHHHHTCCHHHHHHHHHHHTTTTSSCCCSCCCCC
T ss_pred HHcCCccHHHHHHHhCCChHHHHHHHHhhcccccCCcccccCCC
Confidence 6788 599999999999999987 55554443334444455443
No 60
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=39.12 E-value=38 Score=26.09 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=29.4
Q ss_pred HHHHhhhhccCHHHHHHHHHhcCCCHHHHHHHH
Q 024891 216 INSLRRSMQVDDETAQYYLSISNGNLRAALSEF 248 (261)
Q Consensus 216 ~~~~~r~m~~D~~~A~~YL~~a~~d~~~Av~~~ 248 (261)
++++..-..+++.+|+-=|..++||+-.|+...
T Consensus 69 i~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 69 IELVMNQTGASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 567888888999999999999999999998753
No 61
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=35.59 E-value=43 Score=23.40 Aligned_cols=29 Identities=28% Similarity=0.283 Sum_probs=25.1
Q ss_pred hhccCHHHHHHHHHhcCCCHHHHHHHHHh
Q 024891 222 SMQVDDETAQYYLSISNGNLRAALSEFSA 250 (261)
Q Consensus 222 ~m~~D~~~A~~YL~~a~~d~~~Av~~~~~ 250 (261)
.|..+.+.|+.=|..+++|++.|+....+
T Consensus 18 ~MGF~~~~a~~AL~~~~~nve~A~e~L~~ 46 (63)
T 1wji_A 18 EMGFSKEASRQALMDNGNNLEAALNVLLT 46 (63)
T ss_dssp TTTCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 47899999999999999999999976543
No 62
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=34.39 E-value=15 Score=27.11 Aligned_cols=21 Identities=19% Similarity=0.178 Sum_probs=19.1
Q ss_pred CcHHHHHHHhCCCHHHHHHHh
Q 024891 125 DTVASLAVKYSVQVMDIKRLN 145 (261)
Q Consensus 125 DTL~~IA~rYgvsv~~I~~~N 145 (261)
-|+..||.+|||+...|.++=
T Consensus 31 ~s~~~va~~~gIs~~tl~~W~ 51 (108)
T 2rn7_A 31 ATICSIAPKIGCTPETLRVWV 51 (108)
T ss_dssp HHHHHHHHHHTSCHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHH
Confidence 699999999999999998873
No 63
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis}
Probab=33.54 E-value=37 Score=31.59 Aligned_cols=43 Identities=7% Similarity=0.025 Sum_probs=36.5
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHHhCCCCCcC----ccCCCEEEecCC
Q 024891 122 ARGDTVASLAVKYSVQVMDIKRLNNMMSDHG----IYSRERLLIPIS 164 (261)
Q Consensus 122 ~~GDTL~~IA~rYgvsv~~I~~~N~L~s~~~----i~~gq~L~IP~~ 164 (261)
.-+++|+..|.+.|++.+.|++++++...+. |+.|.++.|...
T Consensus 115 ~I~~Sl~~a~~~agl~~~~~~~l~~i~~~~idf~~l~~GD~f~v~~~ 161 (371)
T 3slu_A 115 VVKTSARGSLARAEVPVEIRESLSGIFAGRFSLDGLKEGDAVRLIYD 161 (371)
T ss_dssp ECSSCHHHHHHHTTCCHHHHHHHHHHHTTTCCTTCCCTTCEEEEEEE
T ss_pred EEeccHHHHHHHcCCCHHHHHHHHHHHccCcCHHHcCCCCEEEEEEE
Confidence 4579999999999999999999998754433 899999999863
No 64
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=32.66 E-value=42 Score=21.41 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.1
Q ss_pred ccCCCcHHHHHHHhCCCHHHHHHH
Q 024891 121 LARGDTVASLAVKYSVQVMDIKRL 144 (261)
Q Consensus 121 V~~GDTL~~IA~rYgvsv~~I~~~ 144 (261)
...|-|...||..+|++...+.++
T Consensus 28 ~~~g~s~~eIA~~lgis~~TV~~~ 51 (55)
T 2x48_A 28 AKMGYTVQQIANALGVSERKVRRY 51 (55)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHH
Confidence 357889999999999999998876
No 65
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=30.33 E-value=1.1e+02 Score=19.79 Aligned_cols=28 Identities=25% Similarity=0.272 Sum_probs=23.1
Q ss_pred hhc-cCHHHHHHHHHhcCCCHHHHHHHHH
Q 024891 222 SMQ-VDDETAQYYLSISNGNLRAALSEFS 249 (261)
Q Consensus 222 ~m~-~D~~~A~~YL~~a~~d~~~Av~~~~ 249 (261)
.|+ .|...++.-|..++||+++|+....
T Consensus 16 ~MGF~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 16 DMGFFDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp HTTCCCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HcCCCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 466 4777789999999999999997653
No 66
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=30.23 E-value=1.2e+02 Score=27.55 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=32.4
Q ss_pred cCHHHHHHHHHhcCCCHHHHHHHHHhhHHHHhhcc
Q 024891 225 VDDETAQYYLSISNGNLRAALSEFSADLEWERQGA 259 (261)
Q Consensus 225 ~D~~~A~~YL~~a~~d~~~Av~~~~~D~~WE~~~~ 259 (261)
.|+..-.-||--.+||+++|.+.+.+=++|.++++
T Consensus 33 ~dD~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~ 67 (403)
T 1olm_A 33 PDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKD 67 (403)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CChhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcC
Confidence 68889999999999999999999999999998764
No 67
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=29.07 E-value=47 Score=24.94 Aligned_cols=27 Identities=7% Similarity=0.441 Sum_probs=22.8
Q ss_pred EccCCC---cHHHHHHHhCCCHHHHHHHhC
Q 024891 120 RLARGD---TVASLAVKYSVQVMDIKRLNN 146 (261)
Q Consensus 120 ~V~~GD---TL~~IA~rYgvsv~~I~~~N~ 146 (261)
...+|| |...||.+||||..-++++=+
T Consensus 26 ~~~~G~~lPs~~~La~~~~vSr~tvr~al~ 55 (113)
T 3tqn_A 26 SYVEGEMIPSIRKISTEYQINPLTVSKAYQ 55 (113)
T ss_dssp SSCTTCEECCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCcCcCHHHHHHHHCcCHHHHHHHHH
Confidence 467898 667999999999999988753
No 68
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=28.63 E-value=46 Score=25.88 Aligned_cols=26 Identities=12% Similarity=0.026 Sum_probs=22.2
Q ss_pred EccCCC---cHHHHHHHhCCCHHHHHHHh
Q 024891 120 RLARGD---TVASLAVKYSVQVMDIKRLN 145 (261)
Q Consensus 120 ~V~~GD---TL~~IA~rYgvsv~~I~~~N 145 (261)
.+++|| |...||.+||||..-++++=
T Consensus 21 ~l~~G~~LPse~~La~~~gvSr~tVr~Al 49 (129)
T 2ek5_A 21 TLSIDQRVPSTNELAAFHRINPATARNGL 49 (129)
T ss_dssp SSCTTSCBCCHHHHHHHTTCCHHHHHHHH
T ss_pred CCCCCCcCcCHHHHHHHHCcCHHHHHHHH
Confidence 367899 66799999999999999774
No 69
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.29 E-value=54 Score=22.58 Aligned_cols=28 Identities=21% Similarity=0.191 Sum_probs=24.8
Q ss_pred hccCHHHHHHHHHhcCCCHHHHHHHHHh
Q 024891 223 MQVDDETAQYYLSISNGNLRAALSEFSA 250 (261)
Q Consensus 223 m~~D~~~A~~YL~~a~~d~~~Av~~~~~ 250 (261)
|..+.+.|+.=|..+++|++.|+....+
T Consensus 19 MGF~~~~a~~AL~~t~~nve~A~e~L~~ 46 (63)
T 2dak_A 19 MGFSRDQALKALRATNNSLERAVDWIFS 46 (63)
T ss_dssp HTCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 7788999999999999999999987654
No 70
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=26.62 E-value=44 Score=24.16 Aligned_cols=34 Identities=9% Similarity=-0.060 Sum_probs=24.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHHhCCCCCcCccCCCEEEe
Q 024891 124 GDTVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLI 161 (261)
Q Consensus 124 GDTL~~IA~rYgvsv~~I~~~N~L~s~~~i~~gq~L~I 161 (261)
.=++..||.+++||...|++.=+ .+..-|....+
T Consensus 16 ~vsv~eLa~~l~VS~~TIRrdL~----~Le~~G~l~R~ 49 (78)
T 1xn7_A 16 RMEAAQISQTLNTPQPMINAMLQ----QLESMGKAVRI 49 (78)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHHH----HHHHHTSEEEE
T ss_pred CCcHHHHHHHHCcCHHHHHHHHH----HHHHCCCEEEe
Confidence 34789999999999999998732 23344555556
No 71
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=26.17 E-value=24 Score=31.37 Aligned_cols=44 Identities=14% Similarity=0.142 Sum_probs=10.6
Q ss_pred HHHHHHHhhhhccCHHHHHHHHHhcCCCHHHHHHHHHhhHHHHh
Q 024891 213 RRIINSLRRSMQVDDETAQYYLSISNGNLRAALSEFSADLEWER 256 (261)
Q Consensus 213 ~kl~~~~~r~m~~D~~~A~~YL~~a~~d~~~Av~~~~~D~~WE~ 256 (261)
.|-.+.+++...+|+++|+..|+.++++...|+..+.-....+.
T Consensus 245 ~r~~~~i~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~ 288 (306)
T 1nri_A 245 ARAVRIVMQATDCNKTLAEQTLLEADQNAKLAIMMILSTLSKSE 288 (306)
T ss_dssp HHHHHHHHHHSCCCC-----------------------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCChHHHHHHHHhCCCHHH
Confidence 33345678888899999999999999999999998866655443
No 72
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=26.00 E-value=67 Score=25.03 Aligned_cols=28 Identities=32% Similarity=0.386 Sum_probs=24.0
Q ss_pred hhc-cCHHHHHHHHHhcCCCHHHHHHHHH
Q 024891 222 SMQ-VDDETAQYYLSISNGNLRAALSEFS 249 (261)
Q Consensus 222 ~m~-~D~~~A~~YL~~a~~d~~~Av~~~~ 249 (261)
-|+ .|.+.++.-|..++||+++||+...
T Consensus 75 eMGF~d~~~ni~AL~~t~Gdve~AVe~L~ 103 (108)
T 2cwb_A 75 DMGIQDDELSLRALQATGGDIQAALELIF 103 (108)
T ss_dssp TTTCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 366 5778999999999999999998764
No 73
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=25.97 E-value=64 Score=23.03 Aligned_cols=33 Identities=12% Similarity=0.115 Sum_probs=27.7
Q ss_pred HHHHhhhhccCHHHHHHHHHhcCCCHHHHHHHHH
Q 024891 216 INSLRRSMQVDDETAQYYLSISNGNLRAALSEFS 249 (261)
Q Consensus 216 ~~~~~r~m~~D~~~A~~YL~~a~~d~~~Av~~~~ 249 (261)
+++|- .|.-.++.|+.=|...+.|+++|++...
T Consensus 23 V~~Lv-sMGFs~~qA~kALKat~~NvErAaDWLF 55 (63)
T 1wgn_A 23 VETVV-NMGYSYECVLRAMKKKGENIEQILDYLF 55 (63)
T ss_dssp HHHHH-HHHCCHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred HHHHH-HcCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 34444 7889999999999999999999998653
No 74
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=25.85 E-value=59 Score=21.33 Aligned_cols=23 Identities=22% Similarity=0.089 Sum_probs=20.3
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHH
Q 024891 122 ARGDTVASLAVKYSVQVMDIKRL 144 (261)
Q Consensus 122 ~~GDTL~~IA~rYgvsv~~I~~~ 144 (261)
-.|-|...||..+|+|...+++.
T Consensus 29 ~~g~s~~eIA~~lgis~~tv~~~ 51 (70)
T 2o8x_A 29 LLGLSYADAAAVCGCPVGTIRSR 51 (70)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 56889999999999999988764
No 75
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=25.72 E-value=57 Score=24.96 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=21.9
Q ss_pred EccCCC---cHHHHHHHhCCCHHHHHHHh
Q 024891 120 RLARGD---TVASLAVKYSVQVMDIKRLN 145 (261)
Q Consensus 120 ~V~~GD---TL~~IA~rYgvsv~~I~~~N 145 (261)
..++|| |...||.+||||..-++++=
T Consensus 30 ~~~~g~~Lps~~~La~~~~vSr~tvr~Al 58 (125)
T 3neu_A 30 EWKGEDKLPSVREMGVKLAVNPNTVSRAY 58 (125)
T ss_dssp SSCTTCBCCCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHCcCHHHHHHHH
Confidence 457888 56699999999999999884
No 76
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=25.44 E-value=76 Score=22.68 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=24.7
Q ss_pred hhccCHHHHHHHHHhcCCCHHHHHHHHH
Q 024891 222 SMQVDDETAQYYLSISNGNLRAALSEFS 249 (261)
Q Consensus 222 ~m~~D~~~A~~YL~~a~~d~~~Av~~~~ 249 (261)
.|+.+.+.|+.=|..+++|++.|+....
T Consensus 38 ~MGF~~~~a~~AL~~t~~nve~Ave~L~ 65 (73)
T 1wiv_A 38 SFGFAEDVARKALKASGGDIEKATDWVF 65 (73)
T ss_dssp HHTCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 5778999999999999999999987654
No 77
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=24.83 E-value=51 Score=23.89 Aligned_cols=24 Identities=13% Similarity=0.113 Sum_probs=21.2
Q ss_pred ccCCCcHHHHHHHhCCCHHHHHHH
Q 024891 121 LARGDTVASLAVKYSVQVMDIKRL 144 (261)
Q Consensus 121 V~~GDTL~~IA~rYgvsv~~I~~~ 144 (261)
+..|-++..||.+|||+...|.++
T Consensus 30 ~~~g~s~~~ia~~lgis~~Tv~~w 53 (128)
T 1pdn_C 30 AADGIRPCVISRQLRVSHGCVSKI 53 (128)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHH
Confidence 358999999999999999888766
No 78
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=24.80 E-value=65 Score=26.99 Aligned_cols=28 Identities=18% Similarity=0.122 Sum_probs=24.3
Q ss_pred hhccCHHHHHHHHHhcCCCHHHHHHHHH
Q 024891 222 SMQVDDETAQYYLSISNGNLRAALSEFS 249 (261)
Q Consensus 222 ~m~~D~~~A~~YL~~a~~d~~~Av~~~~ 249 (261)
.|+.|.+.|+.-|+..+||+..|+....
T Consensus 172 ~MGf~~~~a~~AL~~~~wd~~~A~e~L~ 199 (201)
T 3k9o_A 172 AMGFDRNAVIVALSSKSWDVETATELLL 199 (201)
T ss_dssp TTTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHcCCCHHHHHHHHh
Confidence 3568999999999999999999998643
No 79
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=24.51 E-value=1.5e+02 Score=22.10 Aligned_cols=40 Identities=15% Similarity=0.131 Sum_probs=30.6
Q ss_pred HHHHHHhhhhc--cCHHHHHHHHHhcCCCHHHHHHHHHhhHH
Q 024891 214 RIINSLRRSMQ--VDDETAQYYLSISNGNLRAALSEFSADLE 253 (261)
Q Consensus 214 kl~~~~~r~m~--~D~~~A~~YL~~a~~d~~~Av~~~~~D~~ 253 (261)
-.++.||-.++ +...+.+-=.=.++||+.+|+..+..+..
T Consensus 36 SCLd~iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~~~~ 77 (83)
T 1ufz_A 36 SCLDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQDG 77 (83)
T ss_dssp HHHHHHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHhccc
Confidence 36788888888 55555555555699999999999987765
No 80
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=24.22 E-value=71 Score=21.33 Aligned_cols=23 Identities=13% Similarity=0.278 Sum_probs=20.6
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHH
Q 024891 122 ARGDTVASLAVKYSVQVMDIKRL 144 (261)
Q Consensus 122 ~~GDTL~~IA~rYgvsv~~I~~~ 144 (261)
..|-|+..||...|+|...+++.
T Consensus 23 ~~g~s~~eIA~~lgis~~tV~~~ 45 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDVTRERIRQI 45 (68)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHH
Confidence 36899999999999999998875
No 81
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=23.79 E-value=45 Score=26.08 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=24.7
Q ss_pred ccCCCcHHHHHHHhCCCHHHHHHHhCC
Q 024891 121 LARGDTVASLAVKYSVQVMDIKRLNNM 147 (261)
Q Consensus 121 V~~GDTL~~IA~rYgvsv~~I~~~N~L 147 (261)
+..|-|...||...|+|...|.|.|+-
T Consensus 55 L~~G~SyreIa~~tG~StaTIsRv~r~ 81 (107)
T 3frw_A 55 LTDKRTYLDISEKTGASTATISRVNRS 81 (107)
T ss_dssp HHTTCCHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCccHHHHHHHHHH
Confidence 678999999999999999999998864
No 82
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=23.23 E-value=68 Score=24.69 Aligned_cols=28 Identities=14% Similarity=0.273 Sum_probs=23.3
Q ss_pred EEccCCCcH---HHHHHHhCCCHHHHHHHhC
Q 024891 119 HRLARGDTV---ASLAVKYSVQVMDIKRLNN 146 (261)
Q Consensus 119 h~V~~GDTL---~~IA~rYgvsv~~I~~~N~ 146 (261)
...++||-| ..||.+||||..-++++=.
T Consensus 30 G~l~pG~~LPser~La~~~gVSr~tVReAl~ 60 (134)
T 4ham_A 30 GVLQEGEKILSIREFASRIGVNPNTVSKAYQ 60 (134)
T ss_dssp TSSCTTCEECCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCCCccHHHHHHHHCCCHHHHHHHHH
Confidence 347899966 6899999999999998843
No 83
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=22.32 E-value=54 Score=24.38 Aligned_cols=21 Identities=10% Similarity=0.010 Sum_probs=18.7
Q ss_pred CcHHHHHHHhCCCHHHHHHHh
Q 024891 125 DTVASLAVKYSVQVMDIKRLN 145 (261)
Q Consensus 125 DTL~~IA~rYgvsv~~I~~~N 145 (261)
=|+..||.+++||...|++.=
T Consensus 17 vsv~eLA~~l~VS~~TIRrDL 37 (87)
T 2k02_A 17 MEAKQLSARLQTPQPLIDAML 37 (87)
T ss_dssp EEHHHHHHHTTCCHHHHHHHH
T ss_pred CcHHHHHHHHCcCHHHHHHHH
Confidence 478999999999999999873
No 84
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=22.03 E-value=42 Score=23.17 Aligned_cols=21 Identities=10% Similarity=0.021 Sum_probs=18.5
Q ss_pred CCcHHHHHHHhCCCHHHHHHH
Q 024891 124 GDTVASLAVKYSVQVMDIKRL 144 (261)
Q Consensus 124 GDTL~~IA~rYgvsv~~I~~~ 144 (261)
-++|..||..|||+++.|...
T Consensus 53 ~~~l~~ia~~l~v~~~~l~~~ 73 (78)
T 3qq6_A 53 IQFLEKVSAVLDVSVHTLLDE 73 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHS
T ss_pred HHHHHHHHHHHCcCHHHHhCC
Confidence 378999999999999999764
No 85
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=21.49 E-value=65 Score=24.06 Aligned_cols=26 Identities=12% Similarity=0.092 Sum_probs=21.7
Q ss_pred EccCCC---cHHHHHHHhCCCHHHHHHHh
Q 024891 120 RLARGD---TVASLAVKYSVQVMDIKRLN 145 (261)
Q Consensus 120 ~V~~GD---TL~~IA~rYgvsv~~I~~~N 145 (261)
.+++|+ |...||.+||||..-++++=
T Consensus 36 ~l~~g~~lps~~eLa~~lgVSr~tVr~al 64 (102)
T 2b0l_A 36 ELDGNEGLLVASKIADRVGITRSVIVNAL 64 (102)
T ss_dssp SSBTTEEEECHHHHHHHHTCCHHHHHHHH
T ss_pred hhcCCCcCCCHHHHHHHHCcCHHHHHHHH
Confidence 356777 78999999999999998763
No 86
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.38 E-value=1.8e+02 Score=19.91 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=24.1
Q ss_pred hc-cCHHHHHHHHHhcCCCHHHHHHHHH
Q 024891 223 MQ-VDDETAQYYLSISNGNLRAALSEFS 249 (261)
Q Consensus 223 m~-~D~~~A~~YL~~a~~d~~~Av~~~~ 249 (261)
|. .|.+.-+.-|..++||+.+||.+..
T Consensus 19 MGF~D~~~N~~aL~~~~gnv~~aI~~Ll 46 (54)
T 2cp8_A 19 MGFCDRQLNLRLLKKHNYNILQVVTELL 46 (54)
T ss_dssp HTCCCHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 45 7999999999999999999998764
No 87
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=21.31 E-value=72 Score=22.42 Aligned_cols=23 Identities=9% Similarity=0.185 Sum_probs=20.8
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHH
Q 024891 122 ARGDTVASLAVKYSVQVMDIKRL 144 (261)
Q Consensus 122 ~~GDTL~~IA~rYgvsv~~I~~~ 144 (261)
+.|=|+..||.+.||+...|.++
T Consensus 20 ~~glT~~~LA~~~Gvs~stls~~ 42 (74)
T 1neq_A 20 KRKLSLSALSRQFGYAPTTLANA 42 (74)
T ss_dssp TTSCCHHHHHHHHSSCHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 68899999999999999999865
No 88
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=20.67 E-value=53 Score=23.92 Aligned_cols=27 Identities=30% Similarity=0.490 Sum_probs=22.4
Q ss_pred EccCCC---cHHHHHHHhCCCHHHHHHHhC
Q 024891 120 RLARGD---TVASLAVKYSVQVMDIKRLNN 146 (261)
Q Consensus 120 ~V~~GD---TL~~IA~rYgvsv~~I~~~N~ 146 (261)
.+++|+ |...||.+||||...++++=+
T Consensus 28 ~l~~g~~lps~~eLa~~~~vSr~tvr~al~ 57 (102)
T 1v4r_A 28 ELAPGDTLPSVADIRAQFGVAAKTVSRALA 57 (102)
T ss_dssp SCCTTSBCCCHHHHHHHSSSCTTHHHHHTT
T ss_pred CCCCcCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 356777 678999999999999998754
No 89
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=20.63 E-value=67 Score=23.91 Aligned_cols=25 Identities=12% Similarity=-0.068 Sum_probs=22.3
Q ss_pred ccCCCcHHHHHHHhCCCHHHHHHHh
Q 024891 121 LARGDTVASLAVKYSVQVMDIKRLN 145 (261)
Q Consensus 121 V~~GDTL~~IA~rYgvsv~~I~~~N 145 (261)
+..|-|...||..+|++...|.++=
T Consensus 19 ~~~G~s~~~ia~~lgis~~Tv~r~~ 43 (141)
T 1u78_A 19 KLLNVSLHEMSRKISRSRHCIRVYL 43 (141)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 4689999999999999999998874
No 90
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=20.61 E-value=66 Score=24.67 Aligned_cols=25 Identities=8% Similarity=0.082 Sum_probs=22.0
Q ss_pred ccCCCcHHHHHHHhCCCHHHHHHHh
Q 024891 121 LARGDTVASLAVKYSVQVMDIKRLN 145 (261)
Q Consensus 121 V~~GDTL~~IA~rYgvsv~~I~~~N 145 (261)
+..|-++..||.++||+...|.++=
T Consensus 45 ~~~G~s~~~iA~~lgis~~TV~rw~ 69 (149)
T 1k78_A 45 AHQGVRPCDISRQLRVSHGCVSKIL 69 (149)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 3689999999999999999988773
No 91
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=20.48 E-value=79 Score=20.48 Aligned_cols=22 Identities=9% Similarity=0.021 Sum_probs=18.3
Q ss_pred CCCcHHHHHHHhCCCHHHHHHH
Q 024891 123 RGDTVASLAVKYSVQVMDIKRL 144 (261)
Q Consensus 123 ~GDTL~~IA~rYgvsv~~I~~~ 144 (261)
+.+++..||..+||+++.|..-
T Consensus 43 ~~~~l~~i~~~l~~~~~~l~~~ 64 (71)
T 1zug_A 43 RPRFLFEIAMALNCDPVWLQYG 64 (71)
T ss_dssp SCSTHHHHHHHTTSCHHHHHHS
T ss_pred ChHHHHHHHHHHCCCHHHHhCC
Confidence 3456999999999999999653
No 92
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=20.41 E-value=1.1e+02 Score=25.53 Aligned_cols=35 Identities=14% Similarity=0.215 Sum_probs=32.5
Q ss_pred cCHHHHHHHHHhcCCCHHHHHHHHHhhHHHHhhcc
Q 024891 225 VDDETAQYYLSISNGNLRAALSEFSADLEWERQGA 259 (261)
Q Consensus 225 ~D~~~A~~YL~~a~~d~~~Av~~~~~D~~WE~~~~ 259 (261)
.|.....-||.-.+||+++|.+.+.+=++|.++.+
T Consensus 31 ~dd~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~ 65 (262)
T 1r5l_A 31 LTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECP 65 (262)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCH
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCh
Confidence 78899999999999999999999999999998764
No 93
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=20.07 E-value=93 Score=20.56 Aligned_cols=24 Identities=13% Similarity=0.214 Sum_probs=21.1
Q ss_pred ccCCCcHHHHHHHhCCCHHHHHHH
Q 024891 121 LARGDTVASLAVKYSVQVMDIKRL 144 (261)
Q Consensus 121 V~~GDTL~~IA~rYgvsv~~I~~~ 144 (261)
+..|-|...||.++|+|...+++.
T Consensus 23 ~~~g~s~~eIA~~l~is~~tV~~~ 46 (74)
T 1fse_A 23 LVQDKTTKEIASELFISEKTVRNH 46 (74)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHH
Confidence 467889999999999999888765
Done!