BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024892
(261 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P32980|ATPD_TOBAC ATP synthase delta chain, chloroplastic OS=Nicotiana tabacum
GN=ATPD PE=2 SV=1
Length = 248
Score = 277 bits (709), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 149/259 (57%), Positives = 185/259 (71%), Gaps = 37/259 (14%)
Query: 1 MASLQQTATLSLQSNLFPSGRAASRNPLSATIPSGP------------------------ 36
MA+LQQT ++ QS R+P I SGP
Sbjct: 1 MAALQQTP-ITFQS----------RSPPPTQIISGPTAKLSFSGGLKLPKLTIKLRSNRT 49
Query: 37 --RRRGAHGIRMSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNP 94
R GA G +M A+ A SYA AL D+AK+N TLE T+AD+EKIEKI ++ + FFV+P
Sbjct: 50 SRRGGGAAGSKMVASAAGSYANALADIAKSNGTLEQTTADLEKIEKISDDEAVFNFFVSP 109
Query: 95 TIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMA 154
+ EKKRE+VDEI SS++QP NFLNIL+D KRV+++K+IVKEFE+VYN +T+TE+A
Sbjct: 110 IVGEEKKRELVDEIVSSSSIQPHVANFLNILVDMKRVELIKEIVKEFEKVYNTLTDTELA 169
Query: 155 VVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVK 214
VV+SVVKLES+HLAQIAK VQ+LTG+KNVRIKTVID SLVAGFTIRYG GSKLIDMSVK
Sbjct: 170 VVTSVVKLESQHLAQIAKGVQRLTGSKNVRIKTVIDESLVAGFTIRYGNSGSKLIDMSVK 229
Query: 215 KQLEEIAAQLDLGDVQLAL 233
KQLE+IAAQL++GD+QLA+
Sbjct: 230 KQLEDIAAQLEIGDIQLAV 248
>sp|P11402|ATPD_SPIOL ATP synthase delta chain, chloroplastic OS=Spinacia oleracea
GN=ATPD PE=1 SV=2
Length = 257
Score = 269 bits (687), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 134/220 (60%), Positives = 172/220 (78%), Gaps = 5/220 (2%)
Query: 19 SGRAASRNPLSATIPSGPR-----RRGAHGIRMSATVATSYAIALVDLAKANNTLESTSA 73
S A+ NPL I + + R GA G RM + A+ YA AL D+A TLE+T++
Sbjct: 38 SSSTATFNPLRLKILTASKLTAKPRGGALGTRMVDSTASRYASALADVADVTGTLEATNS 97
Query: 74 DVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDV 133
DVEK+ +IFSE+ ++ FF NP I I+ KR ++DEI +S LQP T NF+NILID++R+++
Sbjct: 98 DVEKLIRIFSEEPVYYFFANPVISIDNKRSVLDEIITTSGLQPHTANFINILIDSERINL 157
Query: 134 VKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSL 193
VK+I+ EFE+V+NK+T TE+AVV+SVVKLE++HLAQIAK VQK+TGAKNVRIKTVIDPSL
Sbjct: 158 VKEILNEFEDVFNKITGTEVAVVTSVVKLENDHLAQIAKGVQKITGAKNVRIKTVIDPSL 217
Query: 194 VAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLDLGDVQLAL 233
VAGFTIRYG GSKL+DMSVKKQLEEIAAQL++ DV LA+
Sbjct: 218 VAGFTIRYGNEGSKLVDMSVKKQLEEIAAQLEMDDVTLAV 257
>sp|Q02758|ATPD_PEA ATP synthase delta chain, chloroplastic OS=Pisum sativum GN=ATPD
PE=1 SV=1
Length = 251
Score = 250 bits (639), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 139/252 (55%), Positives = 181/252 (71%), Gaps = 20/252 (7%)
Query: 1 MASLQQTATLSLQSNLFP-SGRAASRNPL----SATIPSGPR-----------RR---GA 41
MASLQ T T SL S P + +R P+ S+T S RR GA
Sbjct: 1 MASLQHT-TASLHSKHIPKTTNILTRKPILNLSSSTFYSPKLKLKLKLPLTKTRRSTGGA 59
Query: 42 HGIRMSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKK 101
G RMS+ A SYA AL DLA +NNTL++ +AD +KIE++FS+ ++ ++F +P ++ K
Sbjct: 60 LGARMSSLAAGSYAAALADLANSNNTLDAITADFDKIEQLFSDPKVFDYFSSPIVEDSTK 119
Query: 102 REMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVK 161
R+++ E +S QP T NFLN+LID+KR+D++ DI+KEFE VYN +T+TE+ VV+SVVK
Sbjct: 120 RQLIGEFATTSGFQPHTHNFLNVLIDSKRIDMIIDIIKEFEFVYNTLTDTELVVVTSVVK 179
Query: 162 LESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIA 221
LES HLAQIAKQVQKLTGAK VR KT++DPSLVAGFT+RYG GSK IDMSVK++LEEIA
Sbjct: 180 LESHHLAQIAKQVQKLTGAKKVRTKTLLDPSLVAGFTVRYGNTGSKFIDMSVKRKLEEIA 239
Query: 222 AQLDLGDVQLAL 233
AQ+DLGD+QLA+
Sbjct: 240 AQIDLGDIQLAV 251
>sp|Q07300|ATPD_SORBI ATP synthase delta chain, chloroplastic OS=Sorghum bicolor GN=ATPD
PE=2 SV=1
Length = 247
Score = 217 bits (552), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 104/196 (53%), Positives = 146/196 (74%)
Query: 36 PRRRGAHGIRMSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPT 95
PRRRG + A SYA AL ++A N TLE T +D+EK++KIF+++ + EFF NPT
Sbjct: 50 PRRRGDLVRPRAEAAADSYASALSEVAVENGTLEQTVSDLEKLQKIFADETVAEFFDNPT 109
Query: 96 IDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAV 155
+ E+K ++DEI KS LQP NF+N+++D R ++ +IV EFE ++N +T TE+A
Sbjct: 110 VPREEKTALIDEIAKSYELQPHVVNFINVVVDNFRATILPEIVVEFENIFNSLTGTEVAT 169
Query: 156 VSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKK 215
V+SVV+LES+ LAQIA+ VQK+TGAKNVR+KT +DP L+AGFT++YG+ GS LIDMSV+K
Sbjct: 170 VTSVVQLESQDLAQIAQHVQKMTGAKNVRLKTQLDPELIAGFTVQYGRDGSSLIDMSVRK 229
Query: 216 QLEEIAAQLDLGDVQL 231
Q+EEI ++ +L DV L
Sbjct: 230 QIEEITSEFELPDVPL 245
>sp|Q42687|ATPD_CHLRE ATP synthase delta chain, chloroplastic OS=Chlamydomonas
reinhardtii GN=ATPD PE=1 SV=1
Length = 219
Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 129/212 (60%), Gaps = 18/212 (8%)
Query: 28 LSATIPSGPRRRGAHGIRMSAT--------------VATSYAIALVDLAKANNTLESTSA 73
L+A +GPR A +R + V+ SYA ALV+LA LE+ A
Sbjct: 2 LAAKSIAGPRAFKASAVRAAPKAGRRTVVVMARKNEVSESYAKALVELADEKGKLEAVHA 61
Query: 74 DVEKIEKIFSEK-QIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVD 132
DV+ + + E ++ +NP ++ +KKR ++ +I K + Q T N+LN+L++ R+
Sbjct: 62 DVDAVAGLMKENAKLSALIMNPVVESDKKRAVLAKIAKEAGFQQYTINWLNLLVEKDRLS 121
Query: 133 VVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPS 192
+V +I + FE++Y +MT+T++A + S VKLE E IAK++Q+LTG+KN+++K VID S
Sbjct: 122 LVPEICECFEDLYCQMTDTQVATLRSAVKLEQEQQFLIAKKLQELTGSKNIKLKPVIDSS 181
Query: 193 LVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQL 224
L+AGF + Y GS ID+SV+ Q+E +A QL
Sbjct: 182 LIAGFVVEY---GSSQIDLSVRGQIERVADQL 210
>sp|Q4G398|ATPD_EMIHU ATP synthase subunit delta, chloroplastic OS=Emiliania huxleyi
GN=atpD PE=3 SV=1
Length = 180
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 106/176 (60%), Gaps = 5/176 (2%)
Query: 50 VATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQ-IHEFFVNPTIDIEKKREMVDEI 108
+A YA AL++LA AN++L+ T+ D+ + + + + +F NP I + K+ ++ ++
Sbjct: 6 IAVPYAEALLELANANSSLKETTNDINIVSQFLANSSDLKKFLGNPLITRDAKKGVLKDV 65
Query: 109 CKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLA 168
+ T FL +L+D R+ + I +F E+ K + E+A V+S V+L ++
Sbjct: 66 L-GEQIGEKTLTFLMLLVDRGRIAYLDGIAYKFLELSYKEESIEIAKVTSSVQLSAQQQK 124
Query: 169 QIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQL 224
IA++++K+TGAK +++ +DP L+ GFTI + GSKLID S++ QL++I+ L
Sbjct: 125 TIAEKLKKITGAKQIKLALKVDPQLIGGFTI---EIGSKLIDTSIRGQLKQISTLL 177
>sp|B7KKR5|ATPD_CYAP7 ATP synthase subunit delta OS=Cyanothece sp. (strain PCC 7424)
GN=atpH PE=3 SV=1
Length = 184
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 103/188 (54%), Gaps = 7/188 (3%)
Query: 43 GIRMSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKK 101
G +S +A YA AL+ ++++NN E D+ + + + ++ EF NP I E K
Sbjct: 3 GSSLSLEIAEPYAQALMSVSQSNNLTERFGEDIRSLLDLLNNSPELREFLSNPVIREENK 62
Query: 102 REMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVK 161
+E++ I P NFL +L+D +R+ ++ + +++ + ++TNT +A V S +
Sbjct: 63 KEILQRIMGDQT-HPYLRNFLMLLVDKRRIAFLEQVCEQYLALLRQLTNTVLAEVVSATE 121
Query: 162 LESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIA 221
L E + +V+ ++GA+ V +K I+P L+ G I K GS+++D S++ QL I+
Sbjct: 122 LNDEQRQSVIDKVKTISGAQAVELKASINPDLIGGVII---KIGSQILDASIRGQLRRIS 178
Query: 222 AQLDLGDV 229
L LG V
Sbjct: 179 --LSLGGV 184
>sp|Q40610|ATPD_OCHNE ATP synthase subunit delta, chloroplastic OS=Ochrosphaera
neapolitana GN=atpD PE=3 SV=1
Length = 179
Score = 94.4 bits (233), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 107/175 (61%), Gaps = 5/175 (2%)
Query: 48 ATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQ-IHEFFVNPTIDIEKKREMVD 106
A +A +YA AL++LA +N +L+ T+ D+ + + + + +F NP I E+K+ ++
Sbjct: 4 AKIADAYAEALLELANSNKSLKETTNDMNIVSQFLANSSDLKKFLGNPLITRERKKNVLK 63
Query: 107 EICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEH 166
++ + ++ NFL +L++ RV + I ++F E+ K E+A V+S V L ++
Sbjct: 64 DVL-GEQISSVSLNFLMLLVNRGRVAFLDKIAQKFLELSYKQDAIEIAKVTSSVALSAQQ 122
Query: 167 LAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIA 221
++A +++ +TGAK +++ ++P L+ GFT+ + GSKLID S++ QL++I+
Sbjct: 123 QKELAGKLKLITGAKKIKLALRVEPKLIGGFTV---EIGSKLIDTSIRGQLKKIS 174
>sp|Q1XDP4|ATPD_PORYE ATP synthase subunit delta, chloroplastic OS=Porphyra yezoensis
GN=atpD PE=3 SV=1
Length = 186
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 108/183 (59%), Gaps = 15/183 (8%)
Query: 50 VATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKKREMV--- 105
+A YA+AL+DLAK E S D++ I+ I ++ ++ F NP +E K+E++
Sbjct: 10 IAQPYAVALLDLAKTKKVTEKVSQDIQSIQNILAQSDKLKIFLANPLKTVEAKKEVIIAT 69
Query: 106 --DEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLE 163
D+I ++ T +FL IL+D KR+ ++ I ++ E+ +M + +A +++ + L
Sbjct: 70 VGDQINEN------TLSFLMILVDRKRIGMLDAIASKYLELAYQMESLTIANINTSIALS 123
Query: 164 SEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQ 223
+ + ++++ +T AK V++ ++P L+ GFTI+ GSK+ID S++ QL ++A+
Sbjct: 124 PDQETLLTEKIKVMTKAKEVKLIISVEPELIGGFTIQ---IGSKVIDTSIRGQLRQMASH 180
Query: 224 LDL 226
LD+
Sbjct: 181 LDV 183
>sp|P35010|ATPD_GALSU ATP synthase subunit delta, chloroplastic OS=Galdieria sulphuraria
GN=atpD PE=3 SV=1
Length = 177
Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 99/170 (58%), Gaps = 5/170 (2%)
Query: 50 VATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKKREMVDEI 108
+A YA L ++A N+L + + I+ + + + + F VNP I + K+ + +I
Sbjct: 7 IAKVYAEGLFEIANTKNSLAEINEQLNSIKSVLKQMPEFYYFLVNPLISQQIKKNTI-KI 65
Query: 109 CKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLA 168
++ L +T NFL ILI+ +R+ DIV +F ++NK TNT + ++SV+ L +
Sbjct: 66 VFNNNLDKITLNFLLILIERRRIIYFYDIVDQFILIWNKATNTSVVEIASVISLTEKQQQ 125
Query: 169 QIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLE 218
+ +++++T A +++K IDPSL+ G I K+GS LID+S+K +L+
Sbjct: 126 YLINKLKEITKANYIKLKLKIDPSLIGGLII---KFGSNLIDLSLKGKLK 172
>sp|P51243|ATPD_PORPU ATP synthase subunit delta, chloroplastic OS=Porphyra purpurea
GN=atpD PE=3 SV=1
Length = 186
Score = 92.0 bits (227), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 107/186 (57%), Gaps = 15/186 (8%)
Query: 48 ATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKKREMV- 105
A +A YA AL+DLA +E S D++ I+ I + ++ F NP IE K++++
Sbjct: 8 AKIAQPYASALLDLANEKKAIEQISQDMKLIKDILLQSGKLKYFLANPLKTIEAKKQVIA 67
Query: 106 ----DEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVK 161
D+I ++ T +FL +L+D KR+ ++ I ++ E+ M + +A +S+ +
Sbjct: 68 ATFGDQISEN------TLSFLMVLVDRKRISMLDVIAGKYLELAYAMESLTIANISTSIA 121
Query: 162 LESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIA 221
L S+ + +++ +T AK V++ +DP L+ GFTI+ GSK+ID S++ QL+++A
Sbjct: 122 LNSDQENLLIDKIKAMTSAKEVKLVISVDPELIGGFTIQ---IGSKVIDTSIRGQLKQMA 178
Query: 222 AQLDLG 227
+ LD+
Sbjct: 179 SHLDVA 184
>sp|B0JWV0|ATPD_MICAN ATP synthase subunit delta OS=Microcystis aeruginosa (strain
NIES-843) GN=atpH PE=3 SV=1
Length = 182
Score = 91.7 bits (226), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 104/184 (56%), Gaps = 5/184 (2%)
Query: 42 HGIRMSATVATSYAIALVDLAKANNTLESTSADVEKI-EKIFSEKQIHEFFVNPTIDIEK 100
G +S+ +A YA AL+ +A+++ LE+ +++ + E + + + F NP I E
Sbjct: 2 QGSLISSEIAEPYAQALLSVAQSSGQLEAIGGEIKSLLELLENAPDLRAFIGNPVIKEEA 61
Query: 101 KREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVV 160
K+ ++ ++ SSA P NF+ +L+D +R+ ++ + +++ + +TNT +A VSS
Sbjct: 62 KKAVLSQVMGSSA-NPYLTNFMMLLVDKRRIQFLEPVCQQYLTLARVLTNTVLAEVSSAT 120
Query: 161 KLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEI 220
+L + +V+ LTGA V +KT +D SL+ G I K GS++ D S++ QL+ +
Sbjct: 121 ELNDSQKQIVIDKVKTLTGANVVELKTKVDGSLIGGVVI---KVGSQVFDASIRGQLQRL 177
Query: 221 AAQL 224
+ L
Sbjct: 178 SLSL 181
>sp|B7K5I7|ATPD_CYAP8 ATP synthase subunit delta OS=Cyanothece sp. (strain PCC 8801)
GN=atpH PE=3 SV=1
Length = 185
Score = 91.3 bits (225), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 99/183 (54%), Gaps = 5/183 (2%)
Query: 43 GIRMSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSE-KQIHEFFVNPTIDIEKK 101
G +S+ +A YA AL+ +A+A+N E D + I E + + ++P I K
Sbjct: 3 GSLISSAIAEPYAQALMSVAQAHNLTEQFGDDCRSLIAILEESRDLQGLILSPVIKETDK 62
Query: 102 REMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVK 161
+ ++ + P NF+ +L+D +R+ +++I +++ + K+TNT +A V+S +
Sbjct: 63 KAVLRRMMGDRT-SPYLLNFIMLLVDKRRIIFLEEICQQYLTLLRKLTNTVLAEVTSAKE 121
Query: 162 LESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIA 221
L + +++ LTGA+ V IKT +DP L+ G TI K GS++ D S++ QL ++
Sbjct: 122 LSDRQCRAVTDKIKDLTGAQGVEIKTSVDPDLIGGVTI---KVGSQVFDASLRGQLRRVS 178
Query: 222 AQL 224
L
Sbjct: 179 LSL 181
>sp|B2J057|ATPD_NOSP7 ATP synthase subunit delta OS=Nostoc punctiforme (strain ATCC 29133
/ PCC 73102) GN=atpH PE=3 SV=1
Length = 184
Score = 90.9 bits (224), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 97/179 (54%), Gaps = 5/179 (2%)
Query: 47 SATVATSYAIALVDLAKANNTLESTSADVEKIEKIF-SEKQIHEFFVNPTIDIEKKREMV 105
+A VA YA AL+ +A++ N E D + ++KQ+H FF NP I E K+ ++
Sbjct: 7 AAEVAQPYAQALLSIAQSKNLTEEFGEDARTFLGLLRADKQLHNFFSNPFIQAENKKALI 66
Query: 106 DEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESE 165
+I + P NFL IL+D +R+ ++ I +++ + ++ T +A V S V L
Sbjct: 67 KQILGEGS-NPYLRNFLLILVDKRRIAFLESIFQQYLALLRQLNQTVLAEVISAVPLTEA 125
Query: 166 HLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQL 224
I ++V ++ A+ V ++T +D L+ G I K GS++ID S++ QL ++ +L
Sbjct: 126 QQQAIIQKVIAISNARQVELETKVDSELIGGVII---KVGSQVIDASIRGQLRRLSLRL 181
>sp|B1WUI1|ATPD_CYAA5 ATP synthase subunit delta OS=Cyanothece sp. (strain ATCC 51142)
GN=atpH PE=3 SV=1
Length = 185
Score = 90.5 bits (223), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 99/183 (54%), Gaps = 5/183 (2%)
Query: 43 GIRMSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKK 101
G S +A YA AL+ LA++ + S D I I E ++ EF +P I E K
Sbjct: 3 GSLFSTEIAEPYAQALMSLAQSRDITRSIGEDCRSILDILEESAELREFISSPIIKDEDK 62
Query: 102 REMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVK 161
R +++ + + L NFL +L+D +R+ ++ I +++ + K+TNT +A V++ +
Sbjct: 63 RGVLNRLLGNDIHHYLR-NFLMLLVDKRRIVFLQAICEQYLALLRKLTNTVLAEVTASTE 121
Query: 162 LESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIA 221
L + +++ LTGA++V +KT IDP L+ G I K GS++ D S++ QL I+
Sbjct: 122 LSEGQRRDVIDKIKALTGAESVELKTDIDPDLIGGVII---KVGSQVFDASLRGQLRRIS 178
Query: 222 AQL 224
L
Sbjct: 179 ISL 181
>sp|B1XHY9|ATPD_SYNP2 ATP synthase subunit delta OS=Synechococcus sp. (strain ATCC 27264
/ PCC 7002 / PR-6) GN=atpH PE=3 SV=1
Length = 185
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 96/183 (52%), Gaps = 5/183 (2%)
Query: 43 GIRMSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKK 101
G M A V YA AL+ LA+ N +E+ + + + +F E + F +NP + E K
Sbjct: 3 GNTMIAQVVEPYAGALMTLAQETNKVEAFAENCRALLSLFQESAEFRSFVMNPLVKAEDK 62
Query: 102 REMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVK 161
+ ++ +C + NFL +L+D +R+ ++ I +EF + K+ N +A V+S
Sbjct: 63 KGVLQGVCGQD-VDTYFLNFLFLLVDRRRIVFLEGICQEFVALQRKLNNIVLADVTSAQP 121
Query: 162 LESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIA 221
L ++ A IA QV+++TGA V + D L+ G I K GSK+ D S++ QL I+
Sbjct: 122 LTTDQEAAIADQVKQMTGANAVELNISTDADLIGGVVI---KVGSKVFDASLRGQLRRIS 178
Query: 222 AQL 224
L
Sbjct: 179 MDL 181
>sp|B0TI53|ATPD_HELMI ATP synthase subunit delta OS=Heliobacterium modesticaldum (strain
ATCC 51547 / Ice1) GN=atpH PE=3 SV=1
Length = 185
Score = 87.4 bits (215), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 94/175 (53%), Gaps = 4/175 (2%)
Query: 46 MSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMV 105
++ VA YA AL+++ TL++ ++ + ++ ++ F +P+I + +K+++V
Sbjct: 2 LTGAVARRYAQALLEIGIQTKTLDALEGELGRFVEMIGHPELQRFLFHPSIVVAEKKDLV 61
Query: 106 DEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESE 165
+ + A F+ ++ID +R DI +EF + NK+ N E A V+S V+L E
Sbjct: 62 GRLLATGAFSETARAFILLVIDRRRESYFADIFREFVRLANKVRNIEEARVTSAVELAPE 121
Query: 166 HLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEI 220
+ ++ Q+ TG K + ++ +DP L+ G + +G ++ID SV ++ ++
Sbjct: 122 QVERLRSQLAAATG-KAIVLRMAVDPDLIGGLVV---AFGDRIIDGSVAGKIRDL 172
>sp|C6E9F4|ATPD_GEOSM ATP synthase subunit delta OS=Geobacter sp. (strain M21) GN=atpH
PE=3 SV=1
Length = 180
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 91/172 (52%), Gaps = 5/172 (2%)
Query: 50 VATSYAIALVDLAKANNTLESTSADVEKIEKIFSE-KQIHEFFVNPTIDIEKKREMVDEI 108
+A YA ALV L T++S + ++++ + +E + + F NP IE KRE++ E+
Sbjct: 6 IAKRYAKALVQLGSEAGTVDSFNTELDRFSALLTESRDLSAVFANPAYGIESKREVMKEL 65
Query: 109 CKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLA 168
L P+ N L +L++ R+ V+ +I + + ++++ +SS + LE+ +
Sbjct: 66 VAKLQLSPMISNLLMLLLERGRISVLPEISQSYGAFADELSGVIRPTLSSGLPLEAGQIE 125
Query: 169 QIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEI 220
+I + K TG K V +K +DPSL+ G K G K+ D SV+ QL I
Sbjct: 126 EIRSALAKSTG-KKVELKVEVDPSLIGGVVT---KIGGKVFDGSVRTQLARI 173
>sp|Q112Z5|ATPD_TRIEI ATP synthase subunit delta OS=Trichodesmium erythraeum (strain
IMS101) GN=atpH PE=3 SV=1
Length = 182
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 97/180 (53%), Gaps = 5/180 (2%)
Query: 46 MSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKKREM 104
++ + YA AL+ LA++ + + + DV + I E + +F NP I E K+ +
Sbjct: 4 IAGEIVEPYAAALMSLAQSKDLTDKFAEDVRSLINILDESPEFKQFVGNPVIKQEDKKAV 63
Query: 105 VDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLES 164
V + + PL NFL +LID R+ ++ I K++ + ++ T +A V+S V+L
Sbjct: 64 VKRML-GEQVDPLMRNFLMLLIDKGRITFLEQIGKQYLALLRELNQTVLAEVTSTVELNE 122
Query: 165 EHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQL 224
I ++V+ +T A+ V I+T +DPS++ G I K GS++ID S++ QL I L
Sbjct: 123 NQKNTIRERVKSMTSAREVEIETKVDPSILGGVII---KIGSQIIDSSLQGQLRRIGISL 179
>sp|Q8DLP4|ATPD_THEEB ATP synthase subunit delta OS=Thermosynechococcus elongatus (strain
BP-1) GN=atpH PE=3 SV=1
Length = 185
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 95/176 (53%), Gaps = 5/176 (2%)
Query: 50 VATSYAIALVDLAKANNTLESTSADVE-KIEKIFSEKQIHEFFVNPTIDIEKKREMVDEI 108
V YA AL+ LA+ +N ++ D + +E + S ++ +F NP I E K+ ++ ++
Sbjct: 10 VVEPYAEALLSLAQTHNLIDQFQQDTQLMVELVASSGELQQFLANPLIKPEAKKNVLRQL 69
Query: 109 CKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLA 168
+ NFL +L+D +R++ + I + + + K+ N +A V+S V+L +
Sbjct: 70 TVDK-VHGYFLNFLMLLVDRRRINFLSSICEHYRALVRKLRNVALAEVTSAVELNDDQRR 128
Query: 169 QIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQL 224
+ ++V+ +TGA +V + T DP L+ G I K GS++ D S++ QL ++ L
Sbjct: 129 AVVEKVKTMTGAADVELVTACDPELIGGVVI---KVGSQIFDASLRGQLRRLSVTL 181
>sp|B1I6L7|ATPD_DESAP ATP synthase subunit delta OS=Desulforudis audaxviator (strain
MP104C) GN=atpH PE=3 SV=1
Length = 182
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 94/176 (53%), Gaps = 6/176 (3%)
Query: 46 MSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSE-KQIHEFFVNPTIDIEKKREM 104
+ VA YA AL D+A+ NN + T ++ ++ E + + + NP + +E K+E+
Sbjct: 2 IKGAVAARYAQALFDVARDNNRIAETENELRGFMRLLDESRDLQQVLYNPQVPVELKKEI 61
Query: 105 VDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLES 164
V E L T NFL +++D +R +K I F + N+ N A V+S ++L
Sbjct: 62 VRE-AFGKELSGTTLNFLCLVLDRRREVYLKGIADHFIALANETRNIIEAEVTSALELSV 120
Query: 165 EHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEI 220
H + + + ++TG K +RI+ +DP ++ G +R G ++ID S+K+QLE +
Sbjct: 121 VHKVNLMQVLSRMTG-KELRIRYQVDPDIIGGLVVR---LGDRIIDGSIKRQLERL 172
>sp|B0BZL1|ATPD_ACAM1 ATP synthase subunit delta OS=Acaryochloris marina (strain MBIC
11017) GN=atpH PE=3 SV=1
Length = 185
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 98/173 (56%), Gaps = 5/173 (2%)
Query: 46 MSATVATSYAIALVDLAKANNTLESTSADVEKIEKIF-SEKQIHEFFVNPTIDIEKKREM 104
+S+T+ YA AL+ +A++NN DV + + + + +F VNP + ++ +
Sbjct: 6 VSSTIVEPYAEALMSVAQSNNLTNQIGEDVSFVLSLLQTSDDLKDFLVNPLTPADAQKAV 65
Query: 105 VDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLES 164
+ ++ +S +Q NFL +LID +R+ ++ I K ++ + K+ NT +A V+S V+L
Sbjct: 66 LRQLAESR-VQKQFFNFLLLLIDRRRIIFLEGICKYYQALLRKLNNTVLAEVTSTVELTD 124
Query: 165 EHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQL 217
E I +V+ ++ A V ++T IDP L+ G I K GS+++D S++ QL
Sbjct: 125 EQRHAITDKVKHMSQAAQVDLETSIDPDLIGGVII---KIGSQVLDASIRGQL 174
>sp|P12406|ATPD_NOSS1 ATP synthase subunit delta OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=atpH PE=3 SV=1
Length = 183
Score = 85.5 bits (210), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 97/176 (55%), Gaps = 6/176 (3%)
Query: 50 VATSYAIALVDLAKANNTLESTSADVEKIEKIFSE-KQIHEFFVNPTIDIEKKREMVDEI 108
VA YA AL+ +AK+ + E D + + +E +Q+ F NP I E K+ ++ +I
Sbjct: 10 VAQPYAQALLSIAKSKSLTEEFGTDARTLLNLLTENQQLRNFIDNPFIAAENKKALIKQI 69
Query: 109 CKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLA 168
++ P NFL +L+D +R+ + +I++++ + ++ T +A V+S V L +
Sbjct: 70 LSEAS--PYLRNFLLLLVDKRRIFFLPEILQQYLALLRQLNQTVLAEVTSAVALTEDQQQ 127
Query: 169 QIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQL 224
+ ++V LT A+ V + T +D L+ G I K GS++ID S++ QL ++ +L
Sbjct: 128 AVTEKVLALTKARQVELATKVDSDLIGGVII---KVGSQVIDSSIRGQLRRLSLRL 180
>sp|Q3M9V9|ATPD_ANAVT ATP synthase subunit delta OS=Anabaena variabilis (strain ATCC
29413 / PCC 7937) GN=atpH PE=3 SV=1
Length = 183
Score = 85.5 bits (210), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 98/176 (55%), Gaps = 6/176 (3%)
Query: 50 VATSYAIALVDLAKANNTLESTSADVEKIEKIFSE-KQIHEFFVNPTIDIEKKREMVDEI 108
VA YA AL+ +AK+ + E D + + +E +Q+ F NP I E K+ ++ +I
Sbjct: 10 VAQPYAQALLSIAKSKSLTEEFGTDARTLLNLLAENQQLRNFIDNPFIAAENKKALIKQI 69
Query: 109 CKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLA 168
++ P NFL +L+D +R+ +++I++++ + ++ T +A V+S V L +
Sbjct: 70 LSEAS--PYLRNFLLLLVDKRRIFFLEEILQQYLALLRQLNQTVLAEVTSAVALTEDQQQ 127
Query: 169 QIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQL 224
+ ++V LT A+ V + T +D L+ G I K GS++ID S++ QL ++ +L
Sbjct: 128 AVKEKVLALTKARQVELATKVDSDLIGGVII---KVGSQVIDSSIRGQLRRLSLRL 180
>sp|A0T0P3|ATPD_THAPS ATP synthase subunit delta, chloroplastic OS=Thalassiosira
pseudonana GN=atpD PE=3 SV=1
Length = 187
Score = 85.1 bits (209), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 97/181 (53%), Gaps = 5/181 (2%)
Query: 46 MSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSE-KQIHEFFVNPTIDIEKKREM 104
+++ +A+ YA AL D + N + +AD + ++ +E + E+ NP + +K +
Sbjct: 6 LASKIASPYARALYDFSVEQNIMHQVTADFQNLDVFLAEVPTLMEYLGNPIVTATQKEAL 65
Query: 105 VDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLES 164
+ + KS L T FL +L+ R++++ I+ + E+ K + +M VS+ +
Sbjct: 66 LTKTLKSQ-LNAETFKFLMVLVKRDRINLLPTIITTYLELVYKTASVKMIEVSTAFPFTT 124
Query: 165 EHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQL 224
+ K++++LT A+ +R+ +D SL+ GF I K SK+ID ++K QLE +A L
Sbjct: 125 LQKLNLIKKLKELTNAREIRLVVTVDSSLIGGFLI---KTNSKVIDFTIKNQLENLAKHL 181
Query: 225 D 225
D
Sbjct: 182 D 182
>sp|A3PEU0|ATPD_PROM0 ATP synthase subunit delta OS=Prochlorococcus marinus (strain MIT
9301) GN=atpH PE=3 SV=1
Length = 180
Score = 84.7 bits (208), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 98/177 (55%), Gaps = 5/177 (2%)
Query: 49 TVATSYAIALVDLAKANNTLESTSADVEKI-EKIFSEKQIHEFFVNPTIDIEKKREMVDE 107
+V T YA AL+ + N+ E ++V+++ E I + ++ + +P ++ + K+++++E
Sbjct: 6 SVTTPYAEALLQVVNENSQTEEMVSEVKQLLELINNSPELEKALSSPILETDAKKKIINE 65
Query: 108 ICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHL 167
I L NFL +L D +R+ ++ I+ F E+Y + +N +A V+S V+L E
Sbjct: 66 IFSKKVNSSLL-NFLKLLADRQRIGILTSILDRFLEIYRENSNIALATVTSAVELTDEQK 124
Query: 168 AQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQL 224
I K++ + G + + + T IDPSL+ GF GSK+ID S+ Q+ ++ L
Sbjct: 125 GLITKKIINIAGTEKLELVTKIDPSLIGGFV---ASVGSKVIDASLASQIRKLGLSL 178
>sp|B5EFJ0|ATPD_GEOBB ATP synthase subunit delta OS=Geobacter bemidjiensis (strain Bem /
ATCC BAA-1014 / DSM 16622) GN=atpH PE=3 SV=1
Length = 180
Score = 84.7 bits (208), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 5/172 (2%)
Query: 50 VATSYAIALVDLAKANNTLESTSADVEKIEKIFSE-KQIHEFFVNPTIDIEKKREMVDEI 108
+A YA ALV L +++S +A++ + + ++ + + F NP IE KRE++ E+
Sbjct: 6 IAKRYAKALVQLGSEAGSVDSFNAELTRFSALLTDSRDLSAVFANPAYGIESKREVMKEL 65
Query: 109 CKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLA 168
L P+ N L +L++ R+ V+ I + + ++++ +SS + LE+ +
Sbjct: 66 VAKLQLSPMISNLLMLLLERGRISVLPQISESYGAFADELSGVIRPTLSSGLPLEASQIE 125
Query: 169 QIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEI 220
+I + K TG K V +K +DPSL+ G K G K+ D SV+ QL I
Sbjct: 126 EIRSALAKSTG-KKVELKVEVDPSLIGGVVT---KIGGKVFDGSVRTQLARI 173
>sp|A9BCE0|ATPD_PROM4 ATP synthase subunit delta OS=Prochlorococcus marinus (strain MIT
9211) GN=atpH PE=3 SV=1
Length = 182
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 94/177 (53%), Gaps = 5/177 (2%)
Query: 49 TVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKKREMVDE 107
T+ T YA A + +A++ +E A + I +++ E ++ E +P +++E K+ +++
Sbjct: 6 TITTPYAEAFLQVAESKKEVEKIIAQAKSILQLWDESSELREAMGSPVLEVESKKAALEK 65
Query: 108 ICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHL 167
I S + P NF+ +L + +R+ + +++ E+Y N +A V+S L +
Sbjct: 66 IF-SGKVTPSFLNFMKLLAERQRIGFLNSVLERLLELYRAQRNIALATVTSATPLNEDQQ 124
Query: 168 AQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQL 224
A + K VQ + G N+ + +DP L+ GF +R GSK+ID S+ Q+ + +L
Sbjct: 125 AALLKNVQSVAGTNNLELNLKVDPDLIGGFVVRV---GSKVIDASLSGQVRRMGLEL 178
>sp|A9VSA6|ATPD_BACWK ATP synthase subunit delta OS=Bacillus weihenstephanensis (strain
KBAB4) GN=atpH PE=3 SV=1
Length = 180
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 94/179 (52%), Gaps = 6/179 (3%)
Query: 47 SATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKKREMV 105
+ VA YA+AL +AK + LE ++ ++ +F++ ++H F P I E+K+ +
Sbjct: 3 NGIVAKRYAVALFKIAKEKHVLEMFEEELRLVQNVFTKNGELHSFLTQPNISKEQKKTFL 62
Query: 106 DEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESE 165
+ S + L N L ILID KR+D++ +I E+ + N+ N A V S+ L E
Sbjct: 63 ANVFASVSESIL--NTLYILIDNKRIDILPEIANEYVVLANEERNVADATVYSIRLLSEE 120
Query: 166 HLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQL 224
IA+ K TG +R+K V+D L+ G +R G+++ D S++ +L I +L
Sbjct: 121 EKLNIAEAFAKKTGKDAIRVKNVVDEDLLGGIKVR---IGNRIYDGSLQGKLARIQREL 176
>sp|Q6HAX6|ATPD_BACHK ATP synthase subunit delta OS=Bacillus thuringiensis subsp.
konkukian (strain 97-27) GN=atpH PE=3 SV=1
Length = 180
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 6/179 (3%)
Query: 47 SATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKKREMV 105
+ VA YA+AL +AK + LE ++ ++ ++ + ++H F P I E+K+ +
Sbjct: 3 NGIVAKRYAVALFKIAKEKHVLEMFEEELRLVQNVYEKNGELHSFLTQPNISKEQKKTFL 62
Query: 106 DEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESE 165
+ S + L N L ILID KR+D++ DI E+ + N+ N A V S L E
Sbjct: 63 ANVFGSVSESIL--NTLYILIDNKRIDILSDIANEYVVLANEERNVADATVYSTRLLSEE 120
Query: 166 HLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQL 224
IA+ K TG +R+K V+D L+ G +R G+++ D S++ +L I +L
Sbjct: 121 EKLNIAEAFAKRTGKDAIRVKNVVDEDLLGGIKVR---IGNRIYDGSLQGKLARIQREL 176
>sp|Q630U0|ATPD_BACCZ ATP synthase subunit delta OS=Bacillus cereus (strain ZK / E33L)
GN=atpH PE=3 SV=1
Length = 180
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 6/179 (3%)
Query: 47 SATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKKREMV 105
+ VA YA+AL +AK + LE ++ ++ ++ + ++H F P I E+K+ +
Sbjct: 3 NGIVAKRYAVALFKIAKEKHVLEMFEEELRLVQNVYEKNGELHSFLTQPNISKEQKKTFL 62
Query: 106 DEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESE 165
+ S + L N L ILID KR+D++ DI E+ + N+ N A V S L E
Sbjct: 63 ANVFGSVSESIL--NTLYILIDNKRIDILSDIANEYVVLANEERNVADATVYSTRLLSEE 120
Query: 166 HLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQL 224
IA+ K TG +R+K V+D L+ G +R G+++ D S++ +L I +L
Sbjct: 121 EKLNIAEAFAKRTGKDAIRVKNVVDEDLLGGIKVR---IGNRIYDGSLQGKLARIQREL 176
>sp|C1F0N1|ATPD_BACC3 ATP synthase subunit delta OS=Bacillus cereus (strain 03BB102)
GN=atpH PE=3 SV=1
Length = 180
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 6/179 (3%)
Query: 47 SATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKKREMV 105
+ VA YA+AL +AK + LE ++ ++ ++ + ++H F P I E+K+ +
Sbjct: 3 NGIVAKRYAVALFKIAKEKHVLEMFEEELRLVQNVYEKNGELHSFLTQPNISKEQKKTFL 62
Query: 106 DEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESE 165
+ S + L N L ILID KR+D++ DI E+ + N+ N A V S L E
Sbjct: 63 ANVFGSVSESIL--NTLYILIDNKRIDILSDIANEYVVLANEERNVADATVYSTRLLSEE 120
Query: 166 HLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQL 224
IA+ K TG +R+K V+D L+ G +R G+++ D S++ +L I +L
Sbjct: 121 EKLNIAEAFAKRTGKDAIRVKNVVDEDLLGGIKVR---IGNRIYDGSLQGKLARIQREL 176
>sp|B7JGN3|ATPD_BACC0 ATP synthase subunit delta OS=Bacillus cereus (strain AH820)
GN=atpH PE=3 SV=1
Length = 180
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 6/179 (3%)
Query: 47 SATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKKREMV 105
+ VA YA+AL +AK + LE ++ ++ ++ + ++H F P I E+K+ +
Sbjct: 3 NGIVAKRYAVALFKIAKEKHVLEMFEEELRLVQNVYEKNGELHSFLTQPNISKEQKKTFL 62
Query: 106 DEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESE 165
+ S + L N L ILID KR+D++ DI E+ + N+ N A V S L E
Sbjct: 63 ANVFGSVSESIL--NTLYILIDNKRIDILSDIANEYVVLANEERNVADATVYSTRLLSEE 120
Query: 166 HLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQL 224
IA+ K TG +R+K V+D L+ G +R G+++ D S++ +L I +L
Sbjct: 121 EKLNIAEAFAKRTGKDAIRVKNVVDEDLLGGIKVR---IGNRIYDGSLQGKLARIQREL 176
>sp|Q81JZ2|ATPD_BACAN ATP synthase subunit delta OS=Bacillus anthracis GN=atpH PE=3 SV=1
Length = 180
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 6/179 (3%)
Query: 47 SATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKKREMV 105
+ VA YA+AL +AK + LE ++ ++ ++ + ++H F P I E+K+ +
Sbjct: 3 NGIVAKRYAVALFKIAKEKHVLEMFEEELRLVQNVYEKNGELHSFLTQPNISKEQKKTFL 62
Query: 106 DEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESE 165
+ S + L N L ILID KR+D++ DI E+ + N+ N A V S L E
Sbjct: 63 ANVFGSVSESIL--NTLYILIDNKRIDILSDIANEYVVLANEERNVADATVYSTRLLSEE 120
Query: 166 HLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQL 224
IA+ K TG +R+K V+D L+ G +R G+++ D S++ +L I +L
Sbjct: 121 EKLNIAEAFAKRTGKDAIRVKNVVDEDLLGGIKVR---IGNRIYDGSLQGKLARIQREL 176
>sp|A0RL98|ATPD_BACAH ATP synthase subunit delta OS=Bacillus thuringiensis (strain Al
Hakam) GN=atpH PE=3 SV=1
Length = 180
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 6/179 (3%)
Query: 47 SATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKKREMV 105
+ VA YA+AL +AK + LE ++ ++ ++ + ++H F P I E+K+ +
Sbjct: 3 NGIVAKRYAVALFKIAKEKHVLEMFEEELRLVQNVYEKNGELHSFLTQPNISKEQKKTFL 62
Query: 106 DEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESE 165
+ S + L N L ILID KR+D++ DI E+ + N+ N A V S L E
Sbjct: 63 ANVFGSVSESIL--NTLYILIDNKRIDILSDIANEYVVLANEERNVADATVYSTRLLSEE 120
Query: 166 HLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQL 224
IA+ K TG +R+K V+D L+ G +R G+++ D S++ +L I +L
Sbjct: 121 EKLNIAEAFAKRTGKDAIRVKNVVDEDLLGGIKVR---IGNRIYDGSLQGKLARIQREL 176
>sp|C3LFI2|ATPD_BACAC ATP synthase subunit delta OS=Bacillus anthracis (strain CDC 684 /
NRRL 3495) GN=atpH PE=3 SV=1
Length = 180
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 6/179 (3%)
Query: 47 SATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKKREMV 105
+ VA YA+AL +AK + LE ++ ++ ++ + ++H F P I E+K+ +
Sbjct: 3 NGIVAKRYAVALFKIAKEKHVLEMFEEELRLVQNVYEKNGELHSFLTQPNISKEQKKTFL 62
Query: 106 DEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESE 165
+ S + L N L ILID KR+D++ DI E+ + N+ N A V S L E
Sbjct: 63 ANVFGSVSESIL--NTLYILIDNKRIDILSDIANEYVVLANEERNVADATVYSTRLLSEE 120
Query: 166 HLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQL 224
IA+ K TG +R+K V+D L+ G +R G+++ D S++ +L I +L
Sbjct: 121 EKLNIAEAFAKRTGKDAIRVKNVVDEDLLGGIKVR---IGNRIYDGSLQGKLARIQREL 176
>sp|C3P1F7|ATPD_BACAA ATP synthase subunit delta OS=Bacillus anthracis (strain A0248)
GN=atpH PE=3 SV=1
Length = 180
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 6/179 (3%)
Query: 47 SATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKKREMV 105
+ VA YA+AL +AK + LE ++ ++ ++ + ++H F P I E+K+ +
Sbjct: 3 NGIVAKRYAVALFKIAKEKHVLEMFEEELRLVQNVYEKNGELHSFLTQPNISKEQKKTFL 62
Query: 106 DEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESE 165
+ S + L N L ILID KR+D++ DI E+ + N+ N A V S L E
Sbjct: 63 ANVFGSVSESIL--NTLYILIDNKRIDILSDIANEYVVLANEERNVADATVYSTRLLSEE 120
Query: 166 HLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQL 224
IA+ K TG +R+K V+D L+ G +R G+++ D S++ +L I +L
Sbjct: 121 EKLNIAEAFAKRTGKDAIRVKNVVDEDLLGGIKVR---IGNRIYDGSLQGKLARIQREL 176
>sp|Q6B8Q9|ATPD_GRATL ATP synthase subunit delta, chloroplastic OS=Gracilaria
tenuistipitata var. liui GN=atpD PE=3 SV=1
Length = 185
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 101/177 (57%), Gaps = 5/177 (2%)
Query: 50 VATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQ-IHEFFVNPTIDIEKKREMVDEI 108
+A YA ALV+ A + + L+ + D+ I +I ++ Q + FF NP I E K+ +V +
Sbjct: 10 IALPYAEALVESASSASALDQINQDLSLISEILNQSQELKTFFYNPLITTEIKKNVVSSL 69
Query: 109 CKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLA 168
++ + L FL +LID +R+ ++ I+ ++ E+ ++ +T +A V + V L +
Sbjct: 70 F-TNQVHSLVIRFLLVLIDRRRIALLDVIISKYLELVYQLQSTVIAEVLTPVLLTDVQQS 128
Query: 169 QIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLD 225
+ +++ +T +K V++ I P L+AGF I K GSK ID S+ +L+ I+A L+
Sbjct: 129 ALINKIKDMTNSKTVKLVITIKPMLIAGFII---KIGSKTIDTSLYGRLKHISAYLN 182
>sp|Q6GEW9|ATPD_STAAR ATP synthase subunit delta OS=Staphylococcus aureus (strain
MRSA252) GN=atpH PE=3 SV=1
Length = 179
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 92/173 (53%), Gaps = 7/173 (4%)
Query: 50 VATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK--QIHEFFVNPTIDIEKKREMVDE 107
VA YA AL D++ N LE+ + ++ I + +K Q+ NPT E++RE+++
Sbjct: 4 VANKYAKALFDVSLDTNNLETINEELTVINEAVKDKIEQLKMVDSNPTQTAEQRRELING 63
Query: 108 ICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHL 167
+ + + P N + +L D + + ++ D+ K F+ +YN N + A + S +L E L
Sbjct: 64 VF--TDINPYIKNMMYVLADNRHISLIADVFKAFQSLYNGHYNQDFATIESTYELSQEEL 121
Query: 168 AQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEI 220
+I K V + T V + T I+P L+ GF + K G+ ++D SV+ L ++
Sbjct: 122 VKIVKLVTQQTKLSKVIVDTKINPDLIGGFRV---KVGTTVLDGSVRNDLVQL 171
>sp|Q318U0|ATPD_PROM9 ATP synthase subunit delta OS=Prochlorococcus marinus (strain MIT
9312) GN=atpH PE=3 SV=1
Length = 180
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 98/177 (55%), Gaps = 5/177 (2%)
Query: 49 TVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKKREMVDE 107
+V T YA AL+ + N E ++V+++ ++ ++ ++ + +P ++ E K++++ E
Sbjct: 6 SVTTPYAEALLQVVNENLQTEEMVSEVKQLLELLNDSPELEKALSSPILETEAKKKIIIE 65
Query: 108 ICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHL 167
I + L NFL +L D +R+ ++ I+ F E+Y + +N +A V+S V+L E
Sbjct: 66 IFSNKVNSSLL-NFLKLLADRQRIGILTSILNRFLEIYRENSNIALATVTSAVELTDEQK 124
Query: 168 AQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQL 224
I +++ + G + + + T IDPSL+ GF GSK+ID S+ Q+ ++ L
Sbjct: 125 GLITQKIVNIAGTQKLELVTKIDPSLIGGFV---ASVGSKVIDASLASQIRKLGLSL 178
>sp|A8YY73|ATPD_STAAT ATP synthase subunit delta OS=Staphylococcus aureus (strain USA300
/ TCH1516) GN=atpH PE=3 SV=1
Length = 179
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 92/173 (53%), Gaps = 7/173 (4%)
Query: 50 VATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK--QIHEFFVNPTIDIEKKREMVDE 107
VA YA AL D++ N LE+ + ++ I + +K Q+ NPT E++RE+++
Sbjct: 4 VANKYAKALFDVSLDTNNLETINEELTVINEAVKDKIEQLRMVDSNPTQTAEQRRELING 63
Query: 108 ICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHL 167
+ + + P N + +L D + + ++ D+ K F+ +YN N + A + S +L E L
Sbjct: 64 VF--TDINPYIKNMMYVLADNRHISLIADVFKAFQSLYNGHYNQDFATIESTYELSQEEL 121
Query: 168 AQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEI 220
+I K V + T V + T I+P L+ GF + K G+ ++D SV+ L ++
Sbjct: 122 DKIVKLVTQQTKLSKVIVDTKINPDLIGGFRV---KVGTTVLDGSVRNDLVQL 171
>sp|A6QIV0|ATPD_STAAE ATP synthase subunit delta OS=Staphylococcus aureus (strain Newman)
GN=atpH PE=3 SV=1
Length = 179
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 92/173 (53%), Gaps = 7/173 (4%)
Query: 50 VATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK--QIHEFFVNPTIDIEKKREMVDE 107
VA YA AL D++ N LE+ + ++ I + +K Q+ NPT E++RE+++
Sbjct: 4 VANKYAKALFDVSLDTNNLETINEELTVINEAVKDKIEQLRMVDSNPTQTAEQRRELING 63
Query: 108 ICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHL 167
+ + + P N + +L D + + ++ D+ K F+ +YN N + A + S +L E L
Sbjct: 64 VF--TDINPYIKNMMYVLADNRHISLIADVFKAFQSLYNGHYNQDFATIESTYELSQEEL 121
Query: 168 AQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEI 220
+I K V + T V + T I+P L+ GF + K G+ ++D SV+ L ++
Sbjct: 122 DKIVKLVTQQTKLSKVIVDTKINPDLIGGFRV---KVGTTVLDGSVRNDLVQL 171
>sp|Q5HE94|ATPD_STAAC ATP synthase subunit delta OS=Staphylococcus aureus (strain COL)
GN=atpH PE=3 SV=1
Length = 179
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 92/173 (53%), Gaps = 7/173 (4%)
Query: 50 VATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK--QIHEFFVNPTIDIEKKREMVDE 107
VA YA AL D++ N LE+ + ++ I + +K Q+ NPT E++RE+++
Sbjct: 4 VANKYAKALFDVSLDTNNLETINEELTVINEAVKDKIEQLRMVDSNPTQTAEQRRELING 63
Query: 108 ICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHL 167
+ + + P N + +L D + + ++ D+ K F+ +YN N + A + S +L E L
Sbjct: 64 VF--TDINPYIKNMMYVLADNRHISLIADVFKAFQSLYNGHYNQDFATIESTYELSQEEL 121
Query: 168 AQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEI 220
+I K V + T V + T I+P L+ GF + K G+ ++D SV+ L ++
Sbjct: 122 DKIVKLVTQQTKLSKVIVDTKINPDLIGGFRV---KVGTTVLDGSVRNDLVQL 171
>sp|Q2FWE7|ATPD_STAA8 ATP synthase subunit delta OS=Staphylococcus aureus (strain NCTC
8325) GN=atpH PE=3 SV=1
Length = 179
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 92/173 (53%), Gaps = 7/173 (4%)
Query: 50 VATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK--QIHEFFVNPTIDIEKKREMVDE 107
VA YA AL D++ N LE+ + ++ I + +K Q+ NPT E++RE+++
Sbjct: 4 VANKYAKALFDVSLDTNNLETINEELTVINEAVKDKIEQLRMVDSNPTQTAEQRRELING 63
Query: 108 ICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHL 167
+ + + P N + +L D + + ++ D+ K F+ +YN N + A + S +L E L
Sbjct: 64 VF--TDINPYIKNMMYVLADNRHISLIADVFKAFQSLYNGHYNQDFATIESTYELSQEEL 121
Query: 168 AQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEI 220
+I K V + T V + T I+P L+ GF + K G+ ++D SV+ L ++
Sbjct: 122 DKIVKLVTQQTKLSKVIVDTKINPDLIGGFRV---KVGTTVLDGSVRNDLVQL 171
>sp|Q2FF21|ATPD_STAA3 ATP synthase subunit delta OS=Staphylococcus aureus (strain USA300)
GN=atpH PE=3 SV=1
Length = 179
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 92/173 (53%), Gaps = 7/173 (4%)
Query: 50 VATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK--QIHEFFVNPTIDIEKKREMVDE 107
VA YA AL D++ N LE+ + ++ I + +K Q+ NPT E++RE+++
Sbjct: 4 VANKYAKALFDVSLDTNNLETINEELTVINEAVKDKIEQLRMVDSNPTQTAEQRRELING 63
Query: 108 ICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHL 167
+ + + P N + +L D + + ++ D+ K F+ +YN N + A + S +L E L
Sbjct: 64 VF--TDINPYIKNMMYVLADNRHISLIADVFKAFQSLYNGHYNQDFATIESTYELSQEEL 121
Query: 168 AQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEI 220
+I K V + T V + T I+P L+ GF + K G+ ++D SV+ L ++
Sbjct: 122 DKIVKLVTQQTKLSKVIVDTKINPDLIGGFRV---KVGTTVLDGSVRNDLVQL 171
>sp|A2BT26|ATPD_PROMS ATP synthase subunit delta OS=Prochlorococcus marinus (strain
AS9601) GN=atpH PE=3 SV=1
Length = 180
Score = 81.6 bits (200), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 99/177 (55%), Gaps = 5/177 (2%)
Query: 49 TVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKKREMVDE 107
+V T YA AL+ + N+ E ++V+++ ++ ++ ++ + +P ++ + K++++ E
Sbjct: 6 SVTTPYAEALLQVVNENSQTEEMVSEVKQLLELVNDSPELEKALSSPILETDAKKKIIIE 65
Query: 108 ICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHL 167
I + L NFL +L D +R+ ++ I+ F E+Y + +N +A V+S V+L E
Sbjct: 66 IFSNKVNSSLL-NFLKLLADRQRIGILTSILDRFLEIYRENSNIALATVTSAVELTDEQK 124
Query: 168 AQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQL 224
I K++ + G + + + T IDPSL+ GF GSK+ID S+ Q+ ++ L
Sbjct: 125 GLITKKIINIAGTEKLELVTKIDPSLIGGFV---ASVGSKVIDASLASQIRKLGLTL 178
>sp|P63659|ATPD_STAAW ATP synthase subunit delta OS=Staphylococcus aureus (strain MW2)
GN=atpH PE=3 SV=1
Length = 179
Score = 81.6 bits (200), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 92/173 (53%), Gaps = 7/173 (4%)
Query: 50 VATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK--QIHEFFVNPTIDIEKKREMVDE 107
VA YA AL D++ N LE+ + ++ I + +K Q+ NPT E++RE+++
Sbjct: 4 VANKYAKALFDVSLDTNNLETINEELTVINEAVKDKIEQLKMVDSNPTQTAEQRRELING 63
Query: 108 ICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHL 167
+ + + P N + +L D + + ++ D+ K F+ +YN N + A + S +L E L
Sbjct: 64 VF--TDINPYIKNMMYVLADNRHISLIADVFKAFQSLYNGHYNQDFATIESTYELSQEEL 121
Query: 168 AQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEI 220
+I K V + T V + T I+P L+ GF + K G+ ++D SV+ L ++
Sbjct: 122 DKIVKLVTQQTKLSKVIVDTKINPDLIGGFRV---KVGTTVLDGSVRNDLVQL 171
>sp|Q6G7K4|ATPD_STAAS ATP synthase subunit delta OS=Staphylococcus aureus (strain
MSSA476) GN=atpH PE=3 SV=1
Length = 179
Score = 81.6 bits (200), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 92/173 (53%), Gaps = 7/173 (4%)
Query: 50 VATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK--QIHEFFVNPTIDIEKKREMVDE 107
VA YA AL D++ N LE+ + ++ I + +K Q+ NPT E++RE+++
Sbjct: 4 VANKYAKALFDVSLDTNNLETINEELTVINEAVKDKIEQLKMVDSNPTQTAEQRRELING 63
Query: 108 ICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHL 167
+ + + P N + +L D + + ++ D+ K F+ +YN N + A + S +L E L
Sbjct: 64 VF--TDINPYIKNMMYVLADNRHISLIADVFKAFQSLYNGHYNQDFATIESTYELSQEEL 121
Query: 168 AQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEI 220
+I K V + T V + T I+P L+ GF + K G+ ++D SV+ L ++
Sbjct: 122 DKIVKLVTQQTKLSKVIVDTKINPDLIGGFRV---KVGTTVLDGSVRNDLVQL 171
>sp|P99109|ATPD_STAAN ATP synthase subunit delta OS=Staphylococcus aureus (strain N315)
GN=atpH PE=1 SV=1
Length = 179
Score = 81.6 bits (200), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 92/173 (53%), Gaps = 7/173 (4%)
Query: 50 VATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK--QIHEFFVNPTIDIEKKREMVDE 107
VA YA AL D++ N LE+ + ++ I + +K Q+ NPT E++RE+++
Sbjct: 4 VANKYAKALFDVSLDTNNLETINEELTVINEAVKDKIEQLKMVDSNPTQTAEQRRELING 63
Query: 108 ICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHL 167
+ + + P N + +L D + + ++ D+ K F+ +YN N + A + S +L E L
Sbjct: 64 VF--TDINPYIKNMMYVLADNRHISLIADVFKAFQSLYNGHYNQDFATIESTYELSQEEL 121
Query: 168 AQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEI 220
+I K V + T V + T I+P L+ GF + K G+ ++D SV+ L ++
Sbjct: 122 DKIVKLVTQQTKLSKVIVDTKINPDLIGGFRV---KVGTTVLDGSVRNDLVQL 171
>sp|P63658|ATPD_STAAM ATP synthase subunit delta OS=Staphylococcus aureus (strain Mu50 /
ATCC 700699) GN=atpH PE=1 SV=1
Length = 179
Score = 81.6 bits (200), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 92/173 (53%), Gaps = 7/173 (4%)
Query: 50 VATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK--QIHEFFVNPTIDIEKKREMVDE 107
VA YA AL D++ N LE+ + ++ I + +K Q+ NPT E++RE+++
Sbjct: 4 VANKYAKALFDVSLDTNNLETINEELTVINEAVKDKIEQLKMVDSNPTQTAEQRRELING 63
Query: 108 ICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHL 167
+ + + P N + +L D + + ++ D+ K F+ +YN N + A + S +L E L
Sbjct: 64 VF--TDINPYIKNMMYVLADNRHISLIADVFKAFQSLYNGHYNQDFATIESTYELSQEEL 121
Query: 168 AQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEI 220
+I K V + T V + T I+P L+ GF + K G+ ++D SV+ L ++
Sbjct: 122 DKIVKLVTQQTKLSKVIVDTKINPDLIGGFRV---KVGTTVLDGSVRNDLVQL 171
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,721,025
Number of Sequences: 539616
Number of extensions: 3035741
Number of successful extensions: 13646
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 284
Number of HSP's that attempted gapping in prelim test: 13033
Number of HSP's gapped (non-prelim): 619
length of query: 261
length of database: 191,569,459
effective HSP length: 115
effective length of query: 146
effective length of database: 129,513,619
effective search space: 18908988374
effective search space used: 18908988374
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)