Query 024892
Match_columns 261
No_of_seqs 169 out of 1149
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 08:14:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024892.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024892hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13436 F0F1 ATP synthase sub 100.0 5.9E-43 1.3E-47 301.1 23.3 175 46-225 3-178 (179)
2 PRK13434 F0F1 ATP synthase sub 100.0 7.1E-42 1.5E-46 295.3 23.0 173 48-228 4-177 (184)
3 COG0712 AtpH F0F1-type ATP syn 100.0 6.4E-41 1.4E-45 288.6 22.6 172 48-224 5-177 (178)
4 CHL00119 atpD ATP synthase CF1 100.0 1.9E-38 4.2E-43 273.8 23.5 176 46-225 3-180 (184)
5 PRK08474 F0F1 ATP synthase sub 100.0 1.9E-38 4.1E-43 272.3 22.7 169 46-225 1-169 (176)
6 PRK13430 F0F1 ATP synthase sub 100.0 2.3E-38 4.9E-43 288.8 24.5 185 36-225 85-270 (271)
7 PRK13441 F0F1 ATP synthase sub 100.0 3E-38 6.4E-43 271.6 22.3 174 46-225 2-177 (180)
8 KOG1662 Mitochondrial F1F0-ATP 100.0 1.5E-38 3.1E-43 273.4 19.5 173 50-225 33-207 (210)
9 PRK13429 F0F1 ATP synthase sub 100.0 7.7E-38 1.7E-42 268.6 23.9 176 48-227 4-180 (181)
10 TIGR01145 ATP_synt_delta ATP s 100.0 5.5E-38 1.2E-42 267.8 21.8 171 50-224 1-172 (172)
11 PRK13428 F0F1 ATP synthase sub 100.0 2.4E-37 5.2E-42 299.1 24.3 186 36-225 257-444 (445)
12 PRK05758 F0F1 ATP synthase sub 100.0 4.5E-36 9.7E-41 256.8 22.9 171 48-225 5-176 (177)
13 PF00213 OSCP: ATP synthase de 100.0 7.5E-41 1.6E-45 284.4 -12.6 171 50-224 1-172 (172)
14 PRK13431 F0F1 ATP synthase sub 100.0 1.5E-27 3.3E-32 205.7 21.6 168 48-225 5-177 (180)
15 TIGR03321 alt_F1F0_F0_B altern 99.7 1.7E-15 3.6E-20 136.5 13.6 98 120-224 148-245 (246)
16 PRK14474 F0F1 ATP synthase sub 99.0 7.4E-09 1.6E-13 93.9 12.9 73 149-225 173-246 (250)
17 PRK06669 fliH flagellar assemb 97.9 0.00016 3.4E-09 66.5 11.6 101 117-226 175-276 (281)
18 PRK03963 V-type ATP synthase s 97.0 0.023 5E-07 49.2 13.6 63 160-225 127-189 (198)
19 PRK13430 F0F1 ATP synthase sub 96.9 0.013 2.8E-07 53.9 11.3 61 67-128 26-87 (271)
20 PRK02292 V-type ATP synthase s 96.7 0.018 3.9E-07 49.6 10.2 104 98-225 75-178 (188)
21 TIGR03825 FliH_bacil flagellar 96.3 0.11 2.3E-06 47.2 13.1 84 134-225 161-245 (255)
22 PRK13428 F0F1 ATP synthase sub 95.9 0.11 2.4E-06 50.9 12.3 104 17-130 157-261 (445)
23 PF01991 vATP-synt_E: ATP synt 95.6 0.015 3.2E-07 49.9 3.9 114 99-225 68-190 (198)
24 PF02108 FliH: Flagellar assem 95.2 0.45 9.7E-06 37.6 11.3 62 150-220 66-128 (128)
25 PRK01558 V-type ATP synthase s 95.0 0.4 8.8E-06 42.0 11.4 61 162-226 125-189 (198)
26 PRK05687 fliH flagellar assemb 94.3 1.5 3.2E-05 39.4 13.5 61 162-227 182-243 (246)
27 COG1390 NtpE Archaeal/vacuolar 94.0 0.69 1.5E-05 40.6 10.5 96 117-225 89-184 (194)
28 PRK06328 type III secretion sy 93.4 0.97 2.1E-05 40.4 10.6 67 151-225 131-201 (223)
29 PRK01005 V-type ATP synthase s 93.3 5.6 0.00012 35.3 15.3 58 162-226 139-198 (207)
30 PRK06937 type III secretion sy 93.0 5.8 0.00013 34.7 16.5 69 149-225 128-200 (204)
31 PRK01194 V-type ATP synthase s 91.5 1.8 3.9E-05 37.5 9.4 35 190-225 142-176 (185)
32 PRK09098 type III secretion sy 91.3 3.1 6.6E-05 37.5 11.0 90 125-225 127-220 (233)
33 PRK13386 fliH flagellar assemb 90.1 13 0.00028 33.5 13.9 60 162-228 169-229 (236)
34 COG1317 FliH Flagellar biosynt 88.8 3.6 7.8E-05 37.1 9.4 62 162-227 164-227 (234)
35 KOG1664 Vacuolar H+-ATPase V1 79.2 33 0.00071 30.7 10.7 74 150-225 126-206 (220)
36 TIGR02499 HrpE_YscL_not type I 69.4 62 0.0014 26.6 15.7 63 141-212 103-166 (166)
37 PRK06032 fliH flagellar assemb 65.4 92 0.002 27.1 16.5 99 116-225 95-197 (199)
38 TIGR00962 atpA proton transloc 62.3 51 0.0011 33.2 9.1 20 159-178 477-496 (501)
39 CHL00059 atpA ATP synthase CF1 60.7 60 0.0013 32.6 9.2 21 158-178 456-476 (485)
40 PF12685 SpoIIIAH: SpoIIIAH-li 59.5 26 0.00056 30.5 5.9 116 53-180 69-188 (196)
41 PRK01066 porphobilinogen deami 56.8 41 0.00089 30.5 6.7 84 149-248 13-103 (231)
42 PRK07738 flagellar protein Fla 52.6 38 0.00082 27.5 5.3 41 160-201 41-81 (117)
43 PF03646 FlaG: FlaG protein; 49.7 39 0.00085 26.2 4.9 42 160-202 32-73 (107)
44 PF08914 Myb_DNA-bind_2: Rap1 46.8 4 8.6E-05 29.7 -1.1 13 231-243 41-53 (65)
45 COG0056 AtpA F0F1-type ATP syn 42.3 2.6E+02 0.0057 28.1 10.2 146 10-178 342-497 (504)
46 PRK07165 F0F1 ATP synthase sub 39.5 97 0.0021 31.3 6.9 19 10-28 318-336 (507)
47 PRK08868 flagellar protein Fla 38.3 72 0.0016 26.9 5.0 41 160-201 66-106 (144)
48 COG1334 FlaG Uncharacterized f 37.8 43 0.00094 27.4 3.5 44 164-215 48-91 (120)
49 KOG1086 Cytosolic sorting prot 37.0 3.3E+02 0.0072 27.4 9.9 85 43-128 103-203 (594)
50 PF14675 FANCI_S1: FANCI solen 37.0 1.1E+02 0.0025 27.4 6.4 90 85-174 114-213 (223)
51 smart00183 NAT_PEP Natriuretic 36.7 15 0.00033 22.0 0.5 8 244-251 18-25 (26)
52 cd02413 40S_S3_KH K homology R 35.8 95 0.0021 23.3 4.9 40 149-188 29-73 (81)
53 PRK13343 F0F1 ATP synthase sub 35.7 1E+02 0.0022 31.1 6.5 21 158-178 477-497 (502)
54 PF02520 DUF148: Domain of unk 34.5 2.2E+02 0.0048 22.1 7.3 37 84-123 67-103 (113)
55 PRK09281 F0F1 ATP synthase sub 33.9 2.4E+02 0.0052 28.4 8.7 19 160-178 479-497 (502)
56 COG3372 Predicted nuclease of 33.4 1.9E+02 0.004 28.4 7.5 53 85-137 85-141 (396)
57 PF03937 Sdh5: Flavinator of s 33.1 98 0.0021 22.7 4.5 52 48-107 18-72 (74)
58 COG1256 FlgK Flagellar hook-as 32.5 4.1E+02 0.0089 27.1 10.2 143 65-220 84-248 (552)
59 PF14480 DNA_pol3_a_NI: DNA po 32.0 1E+02 0.0023 22.0 4.5 43 145-187 31-74 (76)
60 PF07560 DUF1539: Domain of Un 31.5 55 0.0012 27.0 3.2 26 86-111 71-96 (126)
61 PF01788 PsbJ: PsbJ; InterPro 30.1 24 0.00052 23.3 0.7 8 244-251 32-39 (40)
62 TIGR01160 SUI1_MOF2 translatio 29.8 1.8E+02 0.0038 23.4 5.8 51 148-206 35-85 (110)
63 PRK15322 invasion protein OrgB 29.5 4.2E+02 0.009 23.8 13.2 100 114-227 77-177 (210)
64 PF09921 DUF2153: Uncharacteri 29.2 2.8E+02 0.0061 22.9 6.8 62 65-128 26-88 (126)
65 CHL00108 psbJ photosystem II p 28.6 26 0.00055 23.2 0.6 8 244-251 32-39 (40)
66 PHA01351 putative minor struct 28.4 1.5E+02 0.0033 31.4 6.3 47 103-149 987-1034(1070)
67 PF14674 FANCI_S1-cap: FANCI s 28.1 91 0.002 21.9 3.3 49 57-110 4-52 (53)
68 PRK02565 photosystem II reacti 27.8 27 0.00059 22.9 0.6 8 244-251 31-38 (39)
69 PF00212 ANP: Atrial natriuret 27.7 23 0.0005 22.5 0.3 7 244-250 27-33 (33)
70 TIGR02606 antidote_CC2985 puta 27.0 2.5E+02 0.0053 20.3 6.8 37 113-149 5-41 (69)
71 PF04918 DltD_M: DltD central 26.6 1.8E+02 0.0039 24.4 5.7 64 80-144 48-111 (163)
72 TIGR01609 PF_unchar_267 Plasmo 26.1 1.3E+02 0.0028 25.5 4.5 41 85-127 102-142 (146)
73 PF14409 Herpeto_peptide: Ribo 25.5 60 0.0013 23.1 2.1 18 233-252 33-50 (58)
74 PRK09853 putative selenate red 24.8 3E+02 0.0066 30.3 8.1 78 115-195 160-250 (1019)
75 PF15603 Imm45: Immunity prote 24.5 1.1E+02 0.0025 23.2 3.6 26 161-186 55-80 (82)
76 COG3958 Transketolase, C-termi 24.3 1.5E+02 0.0033 28.1 5.0 57 133-197 203-259 (312)
77 PRK09019 translation initiatio 24.0 1.3E+02 0.0028 24.1 4.0 29 152-180 45-73 (108)
78 PF01379 Porphobil_deam: Porph 23.9 50 0.0011 29.6 1.8 71 159-242 8-84 (215)
79 TIGR00212 hemC porphobilinogen 23.4 1.7E+02 0.0037 27.5 5.3 70 159-241 7-82 (292)
80 PRK06824 translation initiatio 22.6 1.6E+02 0.0034 24.0 4.3 32 149-180 52-83 (118)
81 TIGR02093 P_ylase glycogen/sta 21.6 4.2E+02 0.0091 28.4 8.3 133 71-219 477-624 (794)
82 TIGR03324 alt_F1F0_F1_al alter 21.6 5.4E+02 0.012 26.0 8.7 77 84-176 413-495 (497)
83 COG0181 HemC Porphobilinogen d 20.3 1.9E+02 0.0042 27.4 4.9 80 160-253 11-96 (307)
84 TIGR02670 cas_csx8 CRISPR-asso 20.1 3.5E+02 0.0076 26.8 6.8 75 75-149 58-145 (441)
No 1
>PRK13436 F0F1 ATP synthase subunit delta; Provisional
Probab=100.00 E-value=5.9e-43 Score=301.11 Aligned_cols=175 Identities=27% Similarity=0.400 Sum_probs=170.3
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 024892 46 MSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFS-EKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNI 124 (261)
Q Consensus 46 M~~~iA~~YAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~sP~i~~eeK~~lL~~l~~~~~~s~~~~nFL~l 124 (261)
|...+|++||+|||++|.+.+.+++|+++|..+.++++ +|+|+.||.||.++.++|.++++++|++ ++++.+.|||++
T Consensus 3 ~~~~va~~YA~AL~~~a~e~~~l~~v~~~l~~~~~~~~~~~~l~~~l~~P~i~~~~K~~~l~~l~~~-~~~~~~~nfl~l 81 (179)
T PRK13436 3 LKNKNIYNYAEALFDIANEENNVEKYINEVFKIIEILKNNKDLIKLLTSYFIDKEEKFKIIDKIFSA-KIDIYLVNFLKI 81 (179)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcChHHHHHHcCCCCCHHHHHHHHHHHHhc-cCCHHHHHHHHH
Confidence 44899999999999999999999999999999999997 7999999999999999999999999997 699999999999
Q ss_pred HHHcCChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCceeEEEEEecC
Q 024892 125 LIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKW 204 (261)
Q Consensus 125 Lien~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~~~ 204 (261)
|++|+|+.+|++|+++|.++++++.|+..|+|+||+|||++|+++|.+.|++++| ++++++++|||+|||||+|++
T Consensus 82 l~~~~R~~~l~~I~~~f~~~~~~~~~~~~~~V~sA~~Ls~~~~~~i~~~l~~~~g-~~v~l~~~vDpslIGGi~i~~--- 157 (179)
T PRK13436 82 LAKNNLFIYIKQILKKFVKLSNEKLNITYGEIYTTEPLSEVQISRFESKLSKKLN-KKVHLVNKIDPKLIAGIKIKV--- 157 (179)
T ss_pred HHHCChHHHHHHHHHHHHHHHHHHcCeEEEEEEecCCCCHHHHHHHHHHHHHHHC-CeEEEEeecCHHHcCceEEEE---
Confidence 9999999999999999999999999999999999999999999999999999999 799999999999999999999
Q ss_pred CCEEEeccHHHHHHHHHHHhc
Q 024892 205 GSKLIDMSVKKQLEEIAAQLD 225 (261)
Q Consensus 205 gd~viD~Svk~~L~~Lk~~L~ 225 (261)
||++||+||+++|++|++.|.
T Consensus 158 gd~viD~Sik~~L~~l~~~l~ 178 (179)
T PRK13436 158 DNKVFENSIKSKLKELKKQVL 178 (179)
T ss_pred CCEEeehhHHHHHHHHHHHHh
Confidence 899999999999999999886
No 2
>PRK13434 F0F1 ATP synthase subunit delta; Provisional
Probab=100.00 E-value=7.1e-42 Score=295.33 Aligned_cols=173 Identities=23% Similarity=0.376 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 024892 48 ATVATSYAIALVDLAKANNTLESTSADVEKIEKIFS-EKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILI 126 (261)
Q Consensus 48 ~~iA~~YAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~sP~i~~eeK~~lL~~l~~~~~~s~~~~nFL~lLi 126 (261)
.++|++||+|||+ +.+.+++|.++|..+.+++. +|+|+.||.||.++.++|.+++.+++++ ++++.+.|||++|+
T Consensus 4 ~~va~rYA~AL~~---~~~~l~~v~~~l~~l~~~~~~~~~l~~~l~~P~i~~~~K~~~l~~~~~~-~~~~~~~nfl~lL~ 79 (184)
T PRK13434 4 SGVSKVYASALLG---AANSPEEVEQELGDLVQLLFKDEKIRNFFLSPTVSPEEKEQTLAKNLRG-KISDITLNFLGVLL 79 (184)
T ss_pred hhhHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHHcCHHHHHHHhCCCCCHHHHHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence 6899999999999 56899999999999999765 8999999999999999999999999976 69999999999999
Q ss_pred HcCChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCceeEEEEEecCCC
Q 024892 127 DAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGS 206 (261)
Q Consensus 127 en~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~~~gd 206 (261)
+|+|+.++++|+++|.++++++.|++.|+|+||.|||++|+++|.+.|++++| ++|.++++|||+|||||+|++ ||
T Consensus 80 e~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~sA~~Ls~~q~~~l~~~L~k~~g-~~v~l~~~vDpsLIGG~ii~i---gd 155 (184)
T PRK13434 80 NKGRFIYLPEIQKDFTVELDKKKGRVRAQIVSYPSLEPAQVDKLGSILSEKFK-SEFILEVSEDKNLLGGFVVQF---ND 155 (184)
T ss_pred HCCcHHHHHHHHHHHHHHHHHHcCeEEEEEEEcCCCCHHHHHHHHHHHHHHHC-CEeEEEeeeChHHcCceEEEE---CC
Confidence 99999999999999999999999999999999999999999999999999999 799999999999999999999 89
Q ss_pred EEEeccHHHHHHHHHHHhccCC
Q 024892 207 KLIDMSVKKQLEEIAAQLDLGD 228 (261)
Q Consensus 207 ~viD~Svk~~L~~Lk~~L~~~~ 228 (261)
++||+|++++|++|++.|..+.
T Consensus 156 ~viD~Svk~~L~~l~~~l~~~~ 177 (184)
T PRK13434 156 LKIEKSIASQLGEIKKAMLEKK 177 (184)
T ss_pred EEEeHhHHHHHHHHHHHHHhcC
Confidence 9999999999999999998555
No 3
>COG0712 AtpH F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion]
Probab=100.00 E-value=6.4e-41 Score=288.61 Aligned_cols=172 Identities=31% Similarity=0.546 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 024892 48 ATVATSYAIALVDLAKANNTLESTSADVEKIEKIFS-EKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILI 126 (261)
Q Consensus 48 ~~iA~~YAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~sP~i~~eeK~~lL~~l~~~~~~s~~~~nFL~lLi 126 (261)
.++|++||+|||++|.|++.++.|.++|..+..+++ +|+|.++|.||.++.++|.+++.++|+. ..++++.|||.+|+
T Consensus 5 ~~va~~YA~ALf~~A~e~~~~~~~~~~L~~~~~i~~~~~~l~~ll~sp~~~~~~k~~li~~i~~~-~~~~~~~nfL~ll~ 83 (178)
T COG0712 5 STVARRYAKALFELAEEKGQLEEVEEELTFLAEILKNSPKLKQLLSSPAVSAEDKKELLISIFKK-IGDPLLQNFLRLLA 83 (178)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCHhHHHHhcCcCCCHHHHHHHHHHHHhc-cCcHHHHHHHHHHH
Confidence 789999999999999999999999999999999999 5799999999999999999999999997 34599999999999
Q ss_pred HcCChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCceeEEEEEecCCC
Q 024892 127 DAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGS 206 (261)
Q Consensus 127 en~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~~~gd 206 (261)
+|+|+.++++|++.|..++++++|+..|+||||+||+++|+++|.+.|++++| +++.+.++||||||||++|++ ||
T Consensus 84 en~Rl~~l~~I~~~~~~l~~~~~~~~~a~V~SA~~Ls~~q~~~l~~~l~k~~~-~~v~i~~~VD~sliGG~iI~v---gd 159 (178)
T COG0712 84 ENKRLNLLPEILEEFLKLAAESRGIVEAEVTSAFELSDEQLTKLEAKLEKKFG-KKVKLNNKIDPSLIGGLIIKV---GD 159 (178)
T ss_pred HccchhhHHHHHHHHHHHHHHhcCceEEEEEEcCCCCHHHHHHHHHHHHHHhC-CCceEEeeeCHHHhCceEEEE---CC
Confidence 99999999999999999999999999999999999999999999999999999 899999999999999999999 89
Q ss_pred EEEeccHHHHHHHHHHHh
Q 024892 207 KLIDMSVKKQLEEIAAQL 224 (261)
Q Consensus 207 ~viD~Svk~~L~~Lk~~L 224 (261)
.+||+|++++|++|+..|
T Consensus 160 ~viD~Svr~~L~~l~~~l 177 (178)
T COG0712 160 EVIDGSVRGKLKRLAKAL 177 (178)
T ss_pred EEEechHHHHHHHHHHhc
Confidence 999999999999999876
No 4
>CHL00119 atpD ATP synthase CF1 delta subunit; Validated
Probab=100.00 E-value=1.9e-38 Score=273.78 Aligned_cols=176 Identities=32% Similarity=0.564 Sum_probs=170.3
Q ss_pred hh-HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHH
Q 024892 46 MS-ATVATSYAIALVDLAKANNTLESTSADVEKIEKIFS-EKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLN 123 (261)
Q Consensus 46 M~-~~iA~~YAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~sP~i~~eeK~~lL~~l~~~~~~s~~~~nFL~ 123 (261)
|. ..+|++||+|||++|.+.+.+++|.++|..+.++++ +++|+++|.||.++.++|.+++.++|++ ++++.+.|||+
T Consensus 3 ~~~~~va~~YA~AL~~~a~e~~~l~~v~~~l~~l~~~~~~~~~l~~~l~~p~i~~~~K~~ii~~~~~~-~~~~~~~nfl~ 81 (184)
T CHL00119 3 PLVSKIAQPYAEALLEFAKEKNIMEQITADIQLILTFLNESPELKKFLANPLISKNAKKEVIKKTFGS-QINENTLKFLM 81 (184)
T ss_pred chHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCHHHHHHHhCCCCCHHHHHHHHHHHHHh-ccCHHHHHHHH
Confidence 44 899999999999999999999999999999999996 8999999999999999999999999987 69999999999
Q ss_pred HHHHcCChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCceeEEEEEec
Q 024892 124 ILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGK 203 (261)
Q Consensus 124 lLien~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~~ 203 (261)
+|++|+|+.++++|+++|.++++++.|+..++|+||+||+++++++|.+.|++++|.+++.+.++|||+++||+++++
T Consensus 82 ~L~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~v~sa~~L~~~~~~~l~~~L~~~~~~~~v~l~~~vD~~ligGi~i~~-- 159 (184)
T CHL00119 82 VLVDRGRIALLDAIIEKYLELVYKLASIKIAEVSTAVPLSSAQEEALIEKLKEMTNAKEIKLVITVDPSLIGGFLIKI-- 159 (184)
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHhcCeEEEEEEeccCCCHHHHHHHHHHHHHHhCCCeEEEEeeeChHHhCcEEEEE--
Confidence 999999999999999999999999999999999999999999999999999999986689999999999999999999
Q ss_pred CCCEEEeccHHHHHHHHHHHhc
Q 024892 204 WGSKLIDMSVKKQLEEIAAQLD 225 (261)
Q Consensus 204 ~gd~viD~Svk~~L~~Lk~~L~ 225 (261)
|+++||+|++++|+++++.|.
T Consensus 160 -g~~~~D~Si~~~L~~l~~~l~ 180 (184)
T CHL00119 160 -GSKVIDTSIKGQLKQLASHLD 180 (184)
T ss_pred -CCEEEeHhHHHHHHHHHHHHH
Confidence 799999999999999999986
No 5
>PRK08474 F0F1 ATP synthase subunit delta; Validated
Probab=100.00 E-value=1.9e-38 Score=272.32 Aligned_cols=169 Identities=22% Similarity=0.350 Sum_probs=162.8
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccHHHHHHhcCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 024892 46 MSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNIL 125 (261)
Q Consensus 46 M~~~iA~~YAkALfe~A~e~~~le~v~~eL~~l~~ll~~~~l~~~L~sP~i~~eeK~~lL~~l~~~~~~s~~~~nFL~lL 125 (261)
|+..+|++||+|||++|. ++.+++|.++|..+..++++++|++||.||.++.++|.+++..++++ .++.+.|||++|
T Consensus 1 m~~~va~~YA~ALf~~a~-~~~l~~v~~~l~~l~~~~~~~~l~~~l~~P~i~~~~K~~vi~~~~~~--~~~~~~nFL~vL 77 (176)
T PRK08474 1 MEELIAKRYAKALLSSLS-SDELNDIYSNLKILSSAFADEKFKEIISSPEISKEQKIEFLLSFVDN--ANAKFQNFIKLL 77 (176)
T ss_pred CchhhHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHCChhHHHHHhCCCCCHHHHHHHHHHHHhc--cCHHHHHHHHHH
Confidence 888999999999999985 68999999999999999999999999999999999999999999986 589999999999
Q ss_pred HHcCChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCceeEEEEEecCC
Q 024892 126 IDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWG 205 (261)
Q Consensus 126 ien~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~~~g 205 (261)
++|+|+.+|++|+++|.+++++.+|+..|+|+||.|||++|+++|.+.|++++| ++|+++++||| |||++|++ |
T Consensus 78 i~n~R~~~L~~I~~~f~~~~~~~~~~~~~~V~SA~~Ls~~q~~~i~~~l~~~~g-~~v~l~~~vD~--IGG~ii~i---g 151 (176)
T PRK08474 78 AENKRLELIPAIAKELERQIALKENEYVGVVYSNEKLSEETLKKLEEKLSKKFN-AKIKLKQKKSD--YDGIKVEV---D 151 (176)
T ss_pred HHCChHHHHHHHHHHHHHHHHHHcCeEEEEEEECccCCHHHHHHHHHHHHHHhC-CeEEEEEEEcC--CCCEEEEE---C
Confidence 999999999999999999999999999999999999999999999999999999 79999999999 99999999 8
Q ss_pred CEEEeccHHHHHHHHHHHhc
Q 024892 206 SKLIDMSVKKQLEEIAAQLD 225 (261)
Q Consensus 206 d~viD~Svk~~L~~Lk~~L~ 225 (261)
|++||+|++ |++|+.+|.
T Consensus 152 d~v~D~s~~--l~~~~~~~~ 169 (176)
T PRK08474 152 DLGVEVSFS--KDRLKNQLI 169 (176)
T ss_pred CEEEEeeee--HHHHHHHHH
Confidence 999999765 999999886
No 6
>PRK13430 F0F1 ATP synthase subunit delta; Provisional
Probab=100.00 E-value=2.3e-38 Score=288.78 Aligned_cols=185 Identities=19% Similarity=0.352 Sum_probs=179.9
Q ss_pred CCCCCchhhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhhcCCC
Q 024892 36 PRRRGAHGIRMSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFS-EKQIHEFFVNPTIDIEKKREMVDEICKSSAL 114 (261)
Q Consensus 36 ~~~~~~~~~~M~~~iA~~YAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~sP~i~~eeK~~lL~~l~~~~~~ 114 (261)
-+.||+..+-+.+.+..-+.+|||++|.+.+.+++|.+||..+..++. +|+|+.+|.||.++.++|.+++.++|++ ++
T Consensus 85 v~~rWs~~~dl~~~~e~l~~~ALf~~A~e~g~ld~v~~eL~~~~~~l~~~~~l~~~L~~p~i~~e~K~~ll~~l~~~-~~ 163 (271)
T PRK13430 85 VRQRWSRPRDLADALEELGVRALLASAEAQGALDDVEDELFRLGRILASNPELRLALSDRAAPAEAKRELLARLLYG-KV 163 (271)
T ss_pred HHhhccCchhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCHHHHHHHhCCCCCHHHHHHHHHHHHhc-cC
Confidence 368999999999999999999999999999999999999999999987 8999999999999999999999999987 69
Q ss_pred CHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCc
Q 024892 115 QPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLV 194 (261)
Q Consensus 115 s~~~~nFL~lLien~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLI 194 (261)
++.+.||+.+|++++|+..+++|++.|.+++++++|+..++|+||.||+++|+++|.+.|++++| ++|+++++|||+||
T Consensus 164 ~~~~~nfl~~lv~~~R~~~l~~i~~~f~~l~~~~~~~~~a~VtSA~pLs~~q~~~L~~~L~k~~g-~~V~l~~~VDpsLI 242 (271)
T PRK13430 164 TPVTERLAEQAVGRPRGRSIEEGLDELSNLAAARRGRSVATVTTAVPLSDEQKQRLAAALSRIYG-RPVHLNSEVDPSVL 242 (271)
T ss_pred CHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHcCeeEEEEEecCCCCHHHHHHHHHHHHHHHC-CceEEEeeECcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999 79999999999999
Q ss_pred eeEEEEEecCCCEEEeccHHHHHHHHHHHhc
Q 024892 195 AGFTIRYGKWGSKLIDMSVKKQLEEIAAQLD 225 (261)
Q Consensus 195 GG~iI~i~~~gd~viD~Svk~~L~~Lk~~L~ 225 (261)
|||+|++ ||++||+||+++|++|+++|.
T Consensus 243 GGivI~v---Gd~viD~Sv~~rL~~L~~~L~ 270 (271)
T PRK13430 243 GGMRVQV---GDEVIDGSVAGRLERLRRRLA 270 (271)
T ss_pred CcEEEEE---CCEEEehhHHHHHHHHHHHhc
Confidence 9999999 899999999999999999885
No 7
>PRK13441 F0F1 ATP synthase subunit delta; Provisional
Probab=100.00 E-value=3e-38 Score=271.62 Aligned_cols=174 Identities=26% Similarity=0.382 Sum_probs=164.8
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccHHHHHHhcCCCCCHHHHHHHHHHHhhc--CCCCHHHHHHHH
Q 024892 46 MSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICKS--SALQPLTGNFLN 123 (261)
Q Consensus 46 M~~~iA~~YAkALfe~A~e~~~le~v~~eL~~l~~ll~~~~l~~~L~sP~i~~eeK~~lL~~l~~~--~~~s~~~~nFL~ 123 (261)
|...+|++||+|||++|.+.+.+++|.++|..+.+++++ ++.||.||.++.++|.++++.+++. ..+++.+.|||+
T Consensus 2 ~~~~va~~YA~AL~~~a~e~~~l~~v~~~l~~~~~~~~~--~~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~~~nfl~ 79 (180)
T PRK13441 2 RYSAIASKYARALLNVAIELEKEEEYGEFLDLVCQIYES--AKEFFDNPIVKPEKKVSLIKEIMKEFGQEMDEFFENFLN 79 (180)
T ss_pred CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--HHHHHhCCCCCHHHHHHHHHHHHHHhccccCHHHHHHHH
Confidence 346899999999999999999999999999999999873 5789999999999999999999852 258999999999
Q ss_pred HHHHcCChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCceeEEEEEec
Q 024892 124 ILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGK 203 (261)
Q Consensus 124 lLien~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~~ 203 (261)
+|++|+|+.++++|++.|..+++++.|+..|+|+||.||+++++++|.+.|++++| +++++.++|||+|||||+|++
T Consensus 80 vL~~~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~sA~~L~~~~~~~i~~~l~k~~~-~~v~l~~~vD~sliGG~~i~i-- 156 (180)
T PRK13441 80 LVFENKRQKLLPQIRALFEYEKILSEQKVPVNLTTAHELSDEELKLLRKFVRKYVL-RDPVFEETIDESLIAGAVVEF-- 156 (180)
T ss_pred HHHHCChHHHHHHHHHHHHHHHHHhcCeeEEEEEecccCCHHHHHHHHHHHHHHHC-CcceEEeeeChHHhCcEEEEE--
Confidence 99999999999999999999999999999999999999999999999999999999 799999999999999999999
Q ss_pred CCCEEEeccHHHHHHHHHHHhc
Q 024892 204 WGSKLIDMSVKKQLEEIAAQLD 225 (261)
Q Consensus 204 ~gd~viD~Svk~~L~~Lk~~L~ 225 (261)
||++||+|++++|++|+++|.
T Consensus 157 -g~~~~D~Sik~~L~~l~~~l~ 177 (180)
T PRK13441 157 -EGKRLDVTVQGRLKKIAREVL 177 (180)
T ss_pred -CCEEEeHhHHHHHHHHHHHHh
Confidence 899999999999999999985
No 8
>KOG1662 consensus Mitochondrial F1F0-ATP synthase, subunit OSCP/ATP5 [Energy production and conversion]
Probab=100.00 E-value=1.5e-38 Score=273.42 Aligned_cols=173 Identities=33% Similarity=0.607 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHc
Q 024892 50 VATSYAIALVDLAKANNTLESTSADVEKIEKIFS-EKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDA 128 (261)
Q Consensus 50 iA~~YAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~sP~i~~eeK~~lL~~l~~~~~~s~~~~nFL~lLien 128 (261)
++.+||.|||.+|..++++|.+..+|..+.++++ ||+|.+|+.||.++.+.|...++++.+..++.+.+.|||.+|+||
T Consensus 33 ~eG~YAtaLY~AA~K~~~ld~vetdL~kl~~v~k~~pk~~~f~~nP~l~~~~k~~~i~di~~~~~~~~~t~NflnlLaeN 112 (210)
T KOG1662|consen 33 LEGRYATALYSAAVKNSKLDQVETDLNKLEQVLKTDPKFAQFVLNPTLTREKKKTAIDDIVEKLKLAPLTKNFLNLLAEN 112 (210)
T ss_pred ccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChHHHHHhcCCccchHHHHHHHHHHHHHhcccHhHHHHHHHHHHc
Confidence 8899999999999999999999999999999998 899999999999999999999999999888999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHHhC-CceeEEEEeECCCCceeEEEEEecCCCE
Q 024892 129 KRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTG-AKNVRIKTVIDPSLVAGFTIRYGKWGSK 207 (261)
Q Consensus 129 ~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g-~k~I~l~~~VDpsLIGG~iI~i~~~gd~ 207 (261)
||++.+.+|..+|..++++++|.+.|+|+||.||++.+.++|++.|++.+| ++++.++++|||||+||++|++ ||+
T Consensus 113 gRL~~l~~Ivk~F~~lm~ahrGev~~~VtSa~pLd~~~~k~l~~~l~k~l~~gk~l~v~~~vdPSI~GGliVei---GdK 189 (210)
T KOG1662|consen 113 GRLNNLTEIVKAFETLMNAHRGEVKVEVTSAEPLDAKQLKQLEKALQKILGGGKKLKVENKVDPSIIGGLIVEI---GDK 189 (210)
T ss_pred CchhhHHHHHHHHHHHHHHhCCceEEEEEecccCChHHHHHHHHHHHHHhcCCceEEEEeecChhhhcceEEEE---cCe
Confidence 999999999999999999999999999999999999999999999999765 4789999999999999999999 899
Q ss_pred EEeccHHHHHHHHHHHhc
Q 024892 208 LIDMSVKKQLEEIAAQLD 225 (261)
Q Consensus 208 viD~Svk~~L~~Lk~~L~ 225 (261)
++|+||+++++++.+.+.
T Consensus 190 ~vDmSI~tr~q~l~~ll~ 207 (210)
T KOG1662|consen 190 YVDMSIKTRLQKLNKLLE 207 (210)
T ss_pred eEeeeHHHHHHHHHHHhh
Confidence 999999999999998664
No 9
>PRK13429 F0F1 ATP synthase subunit delta; Provisional
Probab=100.00 E-value=7.7e-38 Score=268.58 Aligned_cols=176 Identities=28% Similarity=0.534 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 024892 48 ATVATSYAIALVDLAKANNTLESTSADVEKIEKIFS-EKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILI 126 (261)
Q Consensus 48 ~~iA~~YAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~sP~i~~eeK~~lL~~l~~~~~~s~~~~nFL~lLi 126 (261)
..++++||+|||++|.++++++.|.++|..+..+++ +|+|+.+|.||.++.++|.+++++++++.++++.+.|||++|+
T Consensus 4 ~~ia~~YA~AL~~~a~~~~~l~~~~~~l~~i~~~~~~~~~~~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~ 83 (181)
T PRK13429 4 NAIARRYAKALFQLAKEKGQLDSVYEELKQLAELLEDSPELRDALSNPVLSAEEKKAVLEKLLGKLKVSPEVLNFLKLLA 83 (181)
T ss_pred chhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCHHHHHHHhCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 689999999999999999999999999999999996 7999999999999999999999999987459999999999999
Q ss_pred HcCChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCceeEEEEEecCCC
Q 024892 127 DAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGS 206 (261)
Q Consensus 127 en~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~~~gd 206 (261)
+++|+.++++|++.|.++++++.++..++|+||+||+++++++|.+.|++++| +++.+.++|||+|+||++|++ |+
T Consensus 84 ~~~r~~~l~~I~~~f~~~~~~~~~~~~~~v~sa~~ls~~~~~~l~~~L~~~~~-~~~~~~~~vd~sligG~~i~~---~~ 159 (181)
T PRK13429 84 DRRRLGILPEIAARYLELADEQKGIVRATVTSAVPLSEAQQEAIRQKLEKMTG-KKVELDTAVDPSLIGGVVVKI---GD 159 (181)
T ss_pred HCCcHHHHHHHHHHHHHHHHHhCCEEEEEEEEeecCCHHHHHHHHHHHHHHHC-CEEEEEeeeChhhhCceEEEE---CC
Confidence 99999999999999999999999999999999999999999999999999999 799999999999999999999 79
Q ss_pred EEEeccHHHHHHHHHHHhccC
Q 024892 207 KLIDMSVKKQLEEIAAQLDLG 227 (261)
Q Consensus 207 ~viD~Svk~~L~~Lk~~L~~~ 227 (261)
++||+|++++|+++++.|..|
T Consensus 160 ~~iD~Si~~~L~~l~~~l~~~ 180 (181)
T PRK13429 160 KVLDASVRTQLRRLKETLKKG 180 (181)
T ss_pred EEEehhHHHHHHHHHHHHhcC
Confidence 999999999999999999755
No 10
>TIGR01145 ATP_synt_delta ATP synthase, F1 delta subunit. This model describes the ATP synthase delta subunit in bacteria, mitochondria, and chloroplasts. It is sometimes called OSCP for Oligomycin Sensitivity Conferring Protein. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Delta subunit belongs to the F1 cluster or sector and functionally implicated in the overall stability of the complex. Expression of truncated forms of this subunit results in low ATPase activity.
Probab=100.00 E-value=5.5e-38 Score=267.81 Aligned_cols=171 Identities=30% Similarity=0.504 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHc
Q 024892 50 VATSYAIALVDLAKANNTLESTSADVEKIEKIFS-EKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDA 128 (261)
Q Consensus 50 iA~~YAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~sP~i~~eeK~~lL~~l~~~~~~s~~~~nFL~lLien 128 (261)
+|++||+|||++|.+++.++.|+++|..+.++++ +|+|++||.||.++.++|.++++++|++ ++++.+.|||++|+++
T Consensus 1 va~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~l~~~-~~~~~~~nfl~~l~~~ 79 (172)
T TIGR01145 1 VARPYAKALFEIANEKSSLEEWGEMLNFVKEVLKNNKELKKFLSNPLISAEKKKEFIKNVFGE-QLDESSLNLLLLLAEN 79 (172)
T ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCCHHHHHHHhCCCCCHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHC
Confidence 5789999999999999999999999999999998 6999999999999999999999999987 6899999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCceeEEEEEecCCCEE
Q 024892 129 KRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKL 208 (261)
Q Consensus 129 ~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~~~gd~v 208 (261)
+|+.++++|+.+|.++++++.|+..++|+||+||+++++++|.+.|++++|.+++.+.+++||+||||+++++ |+++
T Consensus 80 ~r~~~l~~I~~~~~~~~~~~~~~~~~~v~sa~~L~~~~~~~l~~~l~~~~~~~~v~~~~~vd~~ligGi~i~~---~~~~ 156 (172)
T TIGR01145 80 GRLAALPDILDQFLKLSYEAQQTADVEVISAKPLTEDQQAKIAEKLEKITGAAKVKLNCKVDKDLIGGVIIRI---GDRV 156 (172)
T ss_pred CcHHHHHHHHHHHHHHHHHhcCEEEEEEEEccCCCHHHHHHHHHHHHHHhCCCeEEEEEeECHHHhCceEEEE---CCEE
Confidence 9999999999999999999999999999999999999999999999999994499999999999999999999 7999
Q ss_pred EeccHHHHHHHHHHHh
Q 024892 209 IDMSVKKQLEEIAAQL 224 (261)
Q Consensus 209 iD~Svk~~L~~Lk~~L 224 (261)
||+|++++|++|+++|
T Consensus 157 iD~Si~~~L~~l~~~l 172 (172)
T TIGR01145 157 IDGSVRGQLKRLSRQL 172 (172)
T ss_pred EehhHHHHHHHHHhhC
Confidence 9999999999999875
No 11
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=100.00 E-value=2.4e-37 Score=299.11 Aligned_cols=186 Identities=17% Similarity=0.306 Sum_probs=179.5
Q ss_pred CCCCCchhhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhhcC-C
Q 024892 36 PRRRGAHGIRMSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFS-EKQIHEFFVNPTIDIEKKREMVDEICKSS-A 113 (261)
Q Consensus 36 ~~~~~~~~~~M~~~iA~~YAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~sP~i~~eeK~~lL~~l~~~~-~ 113 (261)
-+.||++..-+.+.+...|++|||++|.+.+.++.|.++|..+..++. +|+|+.+|.||.++.++|.+++.++|++. +
T Consensus 257 ~~~rws~~~dl~~~~~~~~~~AL~~~A~e~~~l~~v~~eL~~~~~~l~~~~el~~~L~~p~i~~~~K~~ll~~l~~~~~~ 336 (445)
T PRK13428 257 VSQRWSANSDLIDALEHVARLALLERAERAGQVDEVEDQLFRFSRILDAQPRLAILLSDYTVPADGRVALLRKVLGGAST 336 (445)
T ss_pred HhCccCccccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCHHHHHHHHHHHHhcccc
Confidence 368999999999999999999999999999999999999999999887 89999999999999999999999999863 5
Q ss_pred CCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCC
Q 024892 114 LQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSL 193 (261)
Q Consensus 114 ~s~~~~nFL~lLien~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsL 193 (261)
+++.+.|||.+|++++|+..+++|+..|.+++++++|+..++||||+|||++|+++|.+.|+++|| ++|+++++|||+|
T Consensus 337 ~~~~~~nfl~~lv~~~R~~~l~~i~~~~~~l~~~~~g~~~a~VtsA~pLs~~q~~~L~~~L~k~~g-~~V~l~~~VDpsL 415 (445)
T PRK13428 337 VNPVTVALLSQTVELLRGQPAEEAVLFLAELAVARRGEVVAQVSAAAELSDAQRTRLTEVLSRIYG-RPVSVQLHIDPEL 415 (445)
T ss_pred CCHHHHHHHHHHHHCCchhhHHHHHHHHHHHHHHHCCeeEEEEEeecCCCHHHHHHHHHHHHHHHC-CceEEEeeeCchh
Confidence 899999999999999999999999999999999999999999999999999999999999999999 7999999999999
Q ss_pred ceeEEEEEecCCCEEEeccHHHHHHHHHHHhc
Q 024892 194 VAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLD 225 (261)
Q Consensus 194 IGG~iI~i~~~gd~viD~Svk~~L~~Lk~~L~ 225 (261)
||||+|++ ||.|||+||+++|++|+++|-
T Consensus 416 iGGivI~v---Gd~viD~Sv~~rL~~l~~~l~ 444 (445)
T PRK13428 416 LGGLSIAV---GDEVIDGTLSSRLAAAEAQLP 444 (445)
T ss_pred hCceEEEE---CCEEeehhHHHHHHHHHhhCC
Confidence 99999999 899999999999999999873
No 12
>PRK05758 F0F1 ATP synthase subunit delta; Validated
Probab=100.00 E-value=4.5e-36 Score=256.78 Aligned_cols=171 Identities=28% Similarity=0.494 Sum_probs=165.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 024892 48 ATVATSYAIALVDLAKANNTLESTSADVEKIEKIFS-EKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILI 126 (261)
Q Consensus 48 ~~iA~~YAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~sP~i~~eeK~~lL~~l~~~~~~s~~~~nFL~lLi 126 (261)
..++++||+|||++|.+++.++.|+++|.. .+++. +|+|+.||.+|.++.++|.++++++|++ .++.+.|||.+|+
T Consensus 5 ~~~a~~YA~AL~~~a~~~~~~~~v~~~l~~-~~~~~~~~~~~~~l~~p~i~~~~K~~~l~~~~~~--~~~~~~nfL~~l~ 81 (177)
T PRK05758 5 STVARPYAKALFEVALEKGSLDAWSEELTF-LAEVAENEDLAALLSSPLVSAEQKKKLLAAVFKS--LSEYVQNFLKVLA 81 (177)
T ss_pred hhhHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHhcCHHHHHHHhCCCCCHHHHHHHHHHHHcc--CCHHHHHHHHHHH
Confidence 789999999999999999999999999999 76665 8999999999999999999999999987 3999999999999
Q ss_pred HcCChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCceeEEEEEecCCC
Q 024892 127 DAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGS 206 (261)
Q Consensus 127 en~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~~~gd 206 (261)
+++|+.++++|+.+|.+++++..++..++|+||+||+++++++|.+.|++.+| +++.+.++|||+|+||++|++ |+
T Consensus 82 ~~~r~~~l~~i~~~~~~~~~~~~~~~~~~v~sa~~l~~~~~~~i~~~l~~~~~-~~v~l~~~vd~~ligG~~i~~---~~ 157 (177)
T PRK05758 82 ENGRLALLPEILEQFEALRAEHENIVDAEVTSAFPLSEEQLDKLKAALEKRLG-RKVKLNEKVDPSLIGGVIIKV---GD 157 (177)
T ss_pred HCCcHHHHHHHHHHHHHHHHHHcCEEEEEEEEccCCCHHHHHHHHHHHHHHHC-CeeEEEeeEChHHhCceEEEE---CC
Confidence 99999999999999999999999999999999999999999999999999999 689999999999999999999 79
Q ss_pred EEEeccHHHHHHHHHHHhc
Q 024892 207 KLIDMSVKKQLEEIAAQLD 225 (261)
Q Consensus 207 ~viD~Svk~~L~~Lk~~L~ 225 (261)
+++|+|++++|+++++.|.
T Consensus 158 ~~~d~Si~~~L~~l~~~l~ 176 (177)
T PRK05758 158 RVIDGSVRGKLERLKDALK 176 (177)
T ss_pred EEeehhHHHHHHHHHHHhc
Confidence 9999999999999999885
No 13
>PF00213 OSCP: ATP synthase delta (OSCP) subunit; InterPro: IPR000711 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta in bacterial and chloroplast ATPase, or OSCP (oligomycin sensitivity conferral protein) in mitochondrial ATPase (note that in mitochondria there is a different delta subunit, IPR001469 from INTERPRO). The OSCP/delta subunit appears to be part of the peripheral stalk that holds the F1 complex alpha3beta3 catalytic core stationary against the torque of the rotating central stalk, and links subunit A of the F0 complex with the F1 complex. In mitochondria, the peripheral stalk consists of OSCP, as well as F0 components F6, B and D. In bacteria and chloroplasts the peripheral stalks have different subunit compositions: delta and two copies of F0 component B (bacteria), or delta and F0 components B and B' (chloroplasts) [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport; PDB: 2A7U_B 1ABV_A 2WSS_S 2BO5_A 2JMX_A.
Probab=100.00 E-value=7.5e-41 Score=284.42 Aligned_cols=171 Identities=36% Similarity=0.599 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHc
Q 024892 50 VATSYAIALVDLAKANNTLESTSADVEKIEKIFS-EKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDA 128 (261)
Q Consensus 50 iA~~YAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~sP~i~~eeK~~lL~~l~~~~~~s~~~~nFL~lLien 128 (261)
||++||+|||++|.+.+.++.|.++|+.+..++. +|+|+.||.+|.+|.++|.+++.++|++ ++++.+.|||++|+++
T Consensus 1 ia~~YA~AL~~~a~e~~~l~~v~~~l~~l~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~-~~~~~~~nfL~~l~~~ 79 (172)
T PF00213_consen 1 IAKRYAKALFELAKEEGKLDEVLEELQSLLEILKSNPELRKFLESPFIPKEEKKELLDEIFKG-KLSEETVNFLKLLIDN 79 (172)
T ss_dssp HHHCHHHHHHHHCCCCTTHHHHHHHHHHH-HHHCCSCCCHHHHT-TTTTCCCCCCCCCHHCTT-T-SCCCCHHHHHHCCT
T ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCHHHHHHHcCccccHHHHHHHHHHHHcc-cCCHHHHHHHHHHHhc
Confidence 7999999999999999999999999999988876 8999999999999999999999999987 7899999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCceeEEEEEecCCCEE
Q 024892 129 KRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKL 208 (261)
Q Consensus 129 ~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~~~gd~v 208 (261)
+|+.++++|+++|.++++++.++..++|+||+||+++|+++|++.+++++|.+++.++++|||+|||||+|++ |+.+
T Consensus 80 ~r~~~l~~i~~~~~~~~~~~~~~~~~~V~sA~~l~~~q~~~l~~~l~~~~~~~~v~~~~~vD~sLigG~~i~~---~~~~ 156 (172)
T PF00213_consen 80 NRLSLLPEILEEFEELVNEHNGIVEATVTSAFPLSEEQKKKLEKKLKKKYGKKKVELNYKVDPSLIGGFIIEV---GDKV 156 (172)
T ss_dssp T-CCCHHHHHHHHHHHHHHHCCTS-B-SSS-B----SSSTTTTTTCCCTTTT----------------------------
T ss_pred CCcccHHHHHHHHHHHHHHHcCeEEEEEEEecCCCHHHHHHHHHHHHHHHCCCeeeEEEEEccccCcEEEEEE---CCEE
Confidence 9999999999999999999999999999999999999999999999999994489999999999999999999 7999
Q ss_pred EeccHHHHHHHHHHHh
Q 024892 209 IDMSVKKQLEEIAAQL 224 (261)
Q Consensus 209 iD~Svk~~L~~Lk~~L 224 (261)
||+|++++|++|+++|
T Consensus 157 iD~Sv~~~L~~l~~~L 172 (172)
T PF00213_consen 157 IDASVKSRLEQLKKEL 172 (172)
T ss_dssp TTTTTTTTTTTT-TTT
T ss_pred EehhHHHHHHHHHhcC
Confidence 9999999999998764
No 14
>PRK13431 F0F1 ATP synthase subunit delta; Provisional
Probab=99.96 E-value=1.5e-27 Score=205.68 Aligned_cols=168 Identities=18% Similarity=0.237 Sum_probs=154.1
Q ss_pred HHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhccHHHHHHhcCCCCCHHHHHHHHHHHhh----cCCCCHHHHHHH
Q 024892 48 ATVATSYAIALVDLAKAN-NTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICK----SSALQPLTGNFL 122 (261)
Q Consensus 48 ~~iA~~YAkALfe~A~e~-~~le~v~~eL~~l~~ll~~~~l~~~L~sP~i~~eeK~~lL~~l~~----~~~~s~~~~nFL 122 (261)
..||+|||+|||++|.+. +.++.++++|..+.++|.+++|+.++.||.+ ++|.+++.++++ + .+++.+.|||
T Consensus 5 g~IAkRYAkAL~~~a~e~~~~le~v~~~L~~L~~~f~~~el~~il~~P~~--~~Kkk~l~~l~~~a~~~-~~~~~~~NFl 81 (180)
T PRK13431 5 KVISKHYAKALKNHTKGDLALLEEIVVGLKNVAEAIKLHKLNQVLAHVSL--KVKKEVVFEILEKITSI-KACSVLKPVM 81 (180)
T ss_pred chhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccHHHHHHHhCccH--HHHHHHHHHHHhhhccc-cccHHHHHHH
Confidence 469999999999999999 9999999999999999998899999999999 788888888887 4 5899999999
Q ss_pred HHHHHcCChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCceeEEEEEe
Q 024892 123 NILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYG 202 (261)
Q Consensus 123 ~lLien~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~ 202 (261)
++|++|+|+.+||+|+.. ++++..|++.++|+||+||+++++++|.+.|++++| ++|.+.+.+++ .-|++|.++
T Consensus 82 ~LL~en~Rl~~LpeIa~~---L~~~~~~i~~~~V~SA~~Ls~~~~~~I~~~L~kk~g-~kV~L~~~~~~--~~gik~~v~ 155 (180)
T PRK13431 82 EVVLKNNRLDMLELITEE---LSFDSKRTLEATLLVPEKLENNELEAVQQKLQARFN-APVEIAQDTWS--KKGVSLSVS 155 (180)
T ss_pred HHHHHcChHHHHHHHHHH---HHHHHcCeEEEEEEecccCCHHHHHHHHHHHHHHHC-CeEEEEeeccC--CCceEEEEe
Confidence 999999999999999994 899999999999999999999999999999999999 68999998877 599999998
Q ss_pred cCCCEEEeccHHHHHHHHHHHhc
Q 024892 203 KWGSKLIDMSVKKQLEEIAAQLD 225 (261)
Q Consensus 203 ~~gd~viD~Svk~~L~~Lk~~L~ 225 (261)
| =+..+-+|...-.+++.+++.
T Consensus 156 ~-lg~ei~fs~~~~~~~~~~~~~ 177 (180)
T PRK13431 156 S-LDLEIGFSKEDILKKIEKQVI 177 (180)
T ss_pred c-CceEEEeeHHHHHHHHHHHHh
Confidence 7 568899998887787777764
No 15
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=99.65 E-value=1.7e-15 Score=136.53 Aligned_cols=98 Identities=17% Similarity=0.307 Sum_probs=77.9
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCceeEEE
Q 024892 120 NFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTI 199 (261)
Q Consensus 120 nFL~lLien~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI 199 (261)
.++.-.++. +..+|.-...+..-.... +...++|+||+||+++++++|.+.|++.+| +++.+.+.|||+|||||+|
T Consensus 148 ~lid~~i~~--l~~l~~~~~~~l~~~~~~-~~~~~~v~sa~~l~~~~~~~i~~~l~~~~~-~~v~~~~~vdp~ligGi~l 223 (246)
T TIGR03321 148 RMVDVFVQR--LRTLDPDEKAALAEALAD-SGNPVLVRSAFELPEEQREQIRDTIRETLG-PEIRLRFQTEPDLIGGIEL 223 (246)
T ss_pred HHHHHHHHH--hhcCCHHHHHHHHHHHhC-CCCceEEEecCCCCHHHHHHHHHHHHHHHC-CCeeEEeeeCchhcCceEE
Confidence 444444422 444444433333223333 335699999999999999999999999999 7999999999999999999
Q ss_pred EEecCCCEEEeccHHHHHHHHHHHh
Q 024892 200 RYGKWGSKLIDMSVKKQLEEIAAQL 224 (261)
Q Consensus 200 ~i~~~gd~viD~Svk~~L~~Lk~~L 224 (261)
++ ||++||+||+++|++|++++
T Consensus 224 ~~---g~~~id~Si~~~L~~l~~~~ 245 (246)
T TIGR03321 224 TA---GGHKLAWSVDDYLESLEEDV 245 (246)
T ss_pred EE---CCEEEechHHHHHHHHHhhc
Confidence 99 89999999999999999876
No 16
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=98.98 E-value=7.4e-09 Score=93.87 Aligned_cols=73 Identities=22% Similarity=0.326 Sum_probs=68.3
Q ss_pred cCceeEEEEeecCCCHHHHHHHHHHHHH-HhCCceeEEEEeECCCCceeEEEEEecCCCEEEeccHHHHHHHHHHHhc
Q 024892 149 TNTEMAVVSSVVKLESEHLAQIAKQVQK-LTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLD 225 (261)
Q Consensus 149 ~g~~~~~VtSA~~Lseeq~~~L~~~L~k-~~g~k~I~l~~~VDpsLIGG~iI~i~~~gd~viD~Svk~~L~~Lk~~L~ 225 (261)
.+...+.|+||+||++++.++|.+.|.. .+| ..+.+.+.+||+||+|+.+++ |+..+.||+.++|+.|...+.
T Consensus 173 ~~~~~~~i~ta~~l~~~~~~~~~~~l~~~~~~-~~~~~~f~~~p~li~Giel~~---~~~~i~ws~~~yl~~l~~~~~ 246 (250)
T PRK14474 173 TTPEMLRIRTSFELSQDLRAQILESLHQTHLI-PGTDIHFVTSPELICGIELKT---EGYKIAWTLAEYLDALESQLT 246 (250)
T ss_pred cCCCCeEEEeCCCCCHHHHHHHHHHHHHHhcC-CCCceeeecCcccccCeEEec---CCceEeccHHHHHHHHHHHHH
Confidence 3556699999999999999999999999 998 689999999999999999999 799999999999999999886
No 17
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=97.88 E-value=0.00016 Score=66.47 Aligned_cols=101 Identities=13% Similarity=0.155 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCc-e
Q 024892 117 LTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLV-A 195 (261)
Q Consensus 117 ~~~nFL~lLien~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLI-G 195 (261)
...+++..+.++++...++.|-..+..+.+ ...++|+. .|=+-+........+...++ ....+.+..||++- |
T Consensus 175 iaekvi~~~~~~~~~~i~~li~~al~~l~~----~~~i~I~V-~p~d~~~l~~~~~~l~~~l~-~~~~i~I~~D~~l~~G 248 (281)
T PRK06669 175 IAKKVIKEISENSKEIALALVKELLKEVKD----ATDITIRV-NPEDYEYVKEQKDELISLLD-NEEHLKIYEDDAISKG 248 (281)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHcCc----CCcEEEEE-CHHHHHHHHHhHHHHHHhcC-CCCCeEEEECCCCCCC
Confidence 455888888888888877777777776533 22344443 33333333333444445566 45677788887774 9
Q ss_pred eEEEEEecCCCEEEeccHHHHHHHHHHHhcc
Q 024892 196 GFTIRYGKWGSKLIDMSVKKQLEEIAAQLDL 226 (261)
Q Consensus 196 G~iI~i~~~gd~viD~Svk~~L~~Lk~~L~~ 226 (261)
|++|+. ++-.||+||.++|++|++.|..
T Consensus 249 gcvIet---~~G~IDasi~tqLe~l~~~L~e 276 (281)
T PRK06669 249 GCVIET---DFGNIDARIDTQLKQLKEKLLE 276 (281)
T ss_pred CeEEEc---CCCeeeccHHHHHHHHHHHHHh
Confidence 999999 5778999999999999999863
No 18
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=97.01 E-value=0.023 Score=49.24 Aligned_cols=63 Identities=13% Similarity=0.230 Sum_probs=43.8
Q ss_pred cCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCceeEEEEEecCCCEEEeccHHHHHHHHHHHhc
Q 024892 160 VKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLD 225 (261)
Q Consensus 160 ~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~~~gd~viD~Svk~~L~~Lk~~L~ 225 (261)
.|=|.+-.+.....+.+.+| .+.+...-++..+|||+|...| |..++|+|+.++|+.++..+.
T Consensus 127 ~~~D~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~GGvil~s~~-g~i~~dnT~e~~l~~~~~~~~ 189 (198)
T PRK03963 127 NERTLKLIDSRLEEIRDELG--DVEIELGEPIETIGGVIVETKD-GTIRVDNTFEARMERLESELR 189 (198)
T ss_pred ccccHHHHHHHHHHHHHHhC--CeEEEECCCCCccceEEEEeCC-CCEEEeCcHHHHHHHHHHHhH
Confidence 44444444444455556666 3444433245679999998654 888999999999999998876
No 19
>PRK13430 F0F1 ATP synthase subunit delta; Provisional
Probab=96.87 E-value=0.013 Score=53.86 Aligned_cols=61 Identities=13% Similarity=0.243 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHHHhc-cHHHHHHhcCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHc
Q 024892 67 TLESTSADVEKIEKIFS-EKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDA 128 (261)
Q Consensus 67 ~le~v~~eL~~l~~ll~-~~~l~~~L~sP~i~~eeK~~lL~~l~~~~~~s~~~~nFL~lLien 128 (261)
....+.+||..+..++. ++.++..|++|..|.+.|..++..+|++ ++++.+.+++..++.+
T Consensus 26 ~~~~~~~eL~~v~~~l~~~~~lrral~dp~~~~~~k~~L~~~l~~~-kv~~~~~~~~~~~v~~ 87 (271)
T PRK13430 26 AAAQIGNELFAVVAVLDRERSLRRALTDPARPPEAKVELVKRLFGG-KVSPATLEVVSDAVRQ 87 (271)
T ss_pred hHHHHHHHHHHHHHHHccchHHHHhcCCCCCChHHHHHHHHHHhcc-cCCHHHHHHHHHHHHh
Confidence 56789999999999998 8999999999999999999999999998 7999999999988876
No 20
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=96.69 E-value=0.018 Score=49.62 Aligned_cols=104 Identities=11% Similarity=0.180 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHH
Q 024892 98 IEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKL 177 (261)
Q Consensus 98 ~eeK~~lL~~l~~~~~~s~~~~nFL~lLien~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~ 177 (261)
...|..++..+|.. ....+.++- ...+..+|..++... ..-.+.|++ .|-+..-. .+.+. .
T Consensus 75 L~~r~~~l~~v~~~--a~~kL~~~~----~~~y~~~l~~li~~~--------~~~~~~i~~-~~~D~~~~---~~~~~-~ 135 (188)
T PRK02292 75 LNARKEVLEDVRNQ--VEDEIASLD----GDKREELTKSLLDAA--------DADGVRVYS-RKDDEDLV---KSLLS-D 135 (188)
T ss_pred HHHHHHHHHHHHHH--HHHHHHhcc----hhhHHHHHHHHHHhc--------CCCCeEEEE-ccccHHHH---HHHHH-h
Confidence 34667778887754 223333322 233344444444433 222333433 34443333 33332 2
Q ss_pred hCCceeEEEEeECCCCceeEEEEEecCCCEEEeccHHHHHHHHHHHhc
Q 024892 178 TGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLD 225 (261)
Q Consensus 178 ~g~k~I~l~~~VDpsLIGG~iI~i~~~gd~viD~Svk~~L~~Lk~~L~ 225 (261)
++ .+.+ .-+++++|||+|...+ |..++|+|+.++|+.+...+.
T Consensus 136 ~~--~~~~--~~~~~~~GGvil~~~~-g~I~~dnT~~~rl~~~~~~~~ 178 (188)
T PRK02292 136 YD--GLEY--AGNIDCLGGVVVESED-GRVRVNNTFDSILEDVWEDNL 178 (188)
T ss_pred cc--cCee--CCCCCCCceEEEEecC-CceEEeccHHHHHHHHHHHhh
Confidence 33 1333 3468899999999765 889999999999999998876
No 21
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=96.29 E-value=0.11 Score=47.19 Aligned_cols=84 Identities=18% Similarity=0.158 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCc-eeEEEEEecCCCEEEecc
Q 024892 134 VKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLV-AGFTIRYGKWGSKLIDMS 212 (261)
Q Consensus 134 L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLI-GG~iI~i~~~gd~viD~S 212 (261)
+..++..+...+. +.-.++|+. +|-+-+........+...++ ....+.+..||+|- ||++|+. ++=.+|+|
T Consensus 161 i~~lv~~al~~l~---~~~~i~I~v-~p~d~~~v~~~~~~l~~~~~-~~~~i~i~~D~~l~~GgcvIEt---~~G~iDas 232 (255)
T TIGR03825 161 FQALVRQVLSEVR---EFDEVSIYV-HPHWYERVAAQKDELQSILP-ACEHLAVYPDEKLPDGGCYVET---NFGRIDAS 232 (255)
T ss_pred HHHHHHHHHHhcc---CCCcEEEEE-CHHHHHHHHHhHHHHHhhcC-CCCceEEEeCCCCCCCCeEEEc---CCceEEee
Confidence 4455555544443 233444442 23233333333455556666 45678889999997 9999999 45679999
Q ss_pred HHHHHHHHHHHhc
Q 024892 213 VKKQLEEIAAQLD 225 (261)
Q Consensus 213 vk~~L~~Lk~~L~ 225 (261)
+.++|++|++.|.
T Consensus 233 ldtqLe~l~~~l~ 245 (255)
T TIGR03825 233 VDTQLEQLKEKLL 245 (255)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999886
No 22
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=95.94 E-value=0.11 Score=50.95 Aligned_cols=104 Identities=16% Similarity=0.238 Sum_probs=73.9
Q ss_pred CCCcccccCCCcccCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-cHHHHHHhcCCC
Q 024892 17 FPSGRAASRNPLSATIPSGPRRRGAHGIRMSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFS-EKQIHEFFVNPT 95 (261)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~~iA~~YAkALfe~A~e~~~le~v~~eL~~l~~ll~-~~~l~~~L~sP~ 95 (261)
+|.+-+...-|+++. -+|+|-. .-..+..+....+ ..+ ....+..+.+||..+..++. ++.++..|++|.
T Consensus 157 ~~~~~~~~~~~~~~~------m~~~sr~-~~~~~~~~~~~~~-~~~-~~~~~~~~~~el~~v~~~l~~~~~lrr~l~d~~ 227 (445)
T PRK13428 157 MAPSTADVDYPLLAK------MRSASRR-ALASLVDRFDSVA-ADL-DNQALTTLADELVSVAKLLDREPVLTKHLTEPA 227 (445)
T ss_pred cCCCchhhcCchhhh------hhHhhHH-HHHHHHHHHHHHh-ccC-CchhHHHHHHHHHHHHHHHcccHHHHHHcCCCC
Confidence 555666666666533 2333222 1123333333333 111 11346789999999999998 899999999999
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCC
Q 024892 96 IDIEKKREMVDEICKSSALQPLTGNFLNILIDAKR 130 (261)
Q Consensus 96 i~~eeK~~lL~~l~~~~~~s~~~~nFL~lLien~R 130 (261)
-+.+.|..++..+|++ ++++.+..++.-++...+
T Consensus 228 ~~~~~k~~l~~~l~~~-~~~~~~~~~~~~~~~~rw 261 (445)
T PRK13428 228 EDAAPKIRLVERLFSG-KVGAPTLEVLRTAVSQRW 261 (445)
T ss_pred CChhhHHHHHHHHhCc-CCCHHHHHHHHHHHhCcc
Confidence 9999999999999998 799999999888876544
No 23
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=95.55 E-value=0.015 Score=49.86 Aligned_cols=114 Identities=18% Similarity=0.304 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHH---H
Q 024892 99 EKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQV---Q 175 (261)
Q Consensus 99 eeK~~lL~~l~~~~~~s~~~~nFL~lLien~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L---~ 175 (261)
+.|.++++.++.. +..=|.-+.... .....++..+........+.-.+.|+. .++....+.+.+ .
T Consensus 68 ~~k~~~i~~v~~~------~~~~L~~~~~~~--~~Y~~~L~~li~~~~~~~~~~~~~v~~----~~~D~~~~~~~l~~~~ 135 (198)
T PF01991_consen 68 EAKQEIIDEVFEE------VKEKLKSFSKDP--DDYKKFLKKLIEEAAEKLGEGEVIVYV----NKKDLELVKEILKRIK 135 (198)
T ss_dssp HHHHHHHHHHHHH------HHHHHHCTTCCC---THHHHHHHHHHHHHHCCTTSCEEEEE----CCHHHHCCHCCHCCCC
T ss_pred HHHHHHHHHHHHH------HHHHHHHHhcCH--HHHHHHHHHHHHHHHHHhcCCceEEec----ccchHHHHHHHHHHHH
Confidence 3566666666643 122222222222 134455555555444444444455542 333444444332 2
Q ss_pred HHhCC--ceeEEEEeECC----CCceeEEEEEecCCCEEEeccHHHHHHHHHHHhc
Q 024892 176 KLTGA--KNVRIKTVIDP----SLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLD 225 (261)
Q Consensus 176 k~~g~--k~I~l~~~VDp----sLIGG~iI~i~~~gd~viD~Svk~~L~~Lk~~L~ 225 (261)
+.++. +...+...+|+ +++|||+|...| |..++|+|+.++|+.+...+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~GG~il~~~d-g~i~vd~T~e~~l~~~~~~~~ 190 (198)
T PF01991_consen 136 KELKSKAGKDSVEVSVDSDYLIDIIGGFILESED-GKIRVDNTFESRLERLKEEIR 190 (198)
T ss_dssp CCHCCCSSTTTEEEEE-T---BSSSSEEEEECSS-SSCEEEEEHHHHHHHCHHHHH
T ss_pred HHHHHHhCCCcceeecCccccCCccceEEEEECC-CCEEEECCHHHHHHHHHHHhH
Confidence 23331 01224556665 899999999875 899999999999999888765
No 24
>PF02108 FliH: Flagellar assembly protein FliH; InterPro: IPR018035 This entry represents a region found in the flagellar assembly protein FliH, as well as in type III secretion system protein HrpE. Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export []. The sequence of fliH has been deduced and shown to encode a protein of molecular mass of 25,782 Da. Bacterial HrpE proteins are belived to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) [].
Probab=95.20 E-value=0.45 Score=37.62 Aligned_cols=62 Identities=21% Similarity=0.355 Sum_probs=46.4
Q ss_pred CceeEEEEeecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCc-eeEEEEEecCCCEEEeccHHHHHHHH
Q 024892 150 NTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLV-AGFTIRYGKWGSKLIDMSVKKQLEEI 220 (261)
Q Consensus 150 g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLI-GG~iI~i~~~gd~viD~Svk~~L~~L 220 (261)
+...++|+ ++++..+.+.+.+..... ...++...||+|- ||++|+. ++-.+|+|+.+||+++
T Consensus 66 ~~~~v~I~----v~p~d~~~l~~~~~~~~~--~~~~~l~~D~~l~~G~c~iet---~~g~iD~~i~~ql~~l 128 (128)
T PF02108_consen 66 DEEKVTIR----VHPDDYEALEELLEDELP--ELGWELVADPSLAPGDCRIET---EDGIIDASIETQLEAL 128 (128)
T ss_pred cCCCeEEE----ECHHHHHHHHHHHHHHHh--hcCCEEEecCCCCCCCEEEEE---CCeeEEeCHHHHHhcC
Confidence 34445555 578888889888875543 2334888899964 6799999 6889999999999864
No 25
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=95.04 E-value=0.4 Score=41.98 Aligned_cols=61 Identities=20% Similarity=0.303 Sum_probs=44.3
Q ss_pred CCHHHHHHHHH----HHHHHhCCceeEEEEeECCCCceeEEEEEecCCCEEEeccHHHHHHHHHHHhcc
Q 024892 162 LESEHLAQIAK----QVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLDL 226 (261)
Q Consensus 162 Lseeq~~~L~~----~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~~~gd~viD~Svk~~L~~Lk~~L~~ 226 (261)
++++....|.+ .+.+.++ +.|.+.. +..++|||+|+..| |+..+|+|.-+..+-|+..|.-
T Consensus 125 ~~~~D~~~l~~~~~~~~~~~l~-~gi~i~~--~~~~~gG~iv~~~d-g~i~id~T~ea~~~~l~~~L~~ 189 (198)
T PRK01558 125 LNESDLSELESILRAALGNKLK-KGIELKP--FKGISKGFKIQQKD-GSLYYDFSAEAIADILFSYLNP 189 (198)
T ss_pred ECHHHHHHhHHHHHHHHHHHhc-CCeEEcc--cCCcccceEEEEcC-CCeEEeCcHHHHHHHHHHHhcH
Confidence 34555555444 4444555 3455544 56699999999876 9999999999999999998863
No 26
>PRK05687 fliH flagellar assembly protein H; Validated
Probab=94.27 E-value=1.5 Score=39.40 Aligned_cols=61 Identities=20% Similarity=0.271 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHHHHhCCceeEEEEeECCCCc-eeEEEEEecCCCEEEeccHHHHHHHHHHHhccC
Q 024892 162 LESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLV-AGFTIRYGKWGSKLIDMSVKKQLEEIAAQLDLG 227 (261)
Q Consensus 162 Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLI-GG~iI~i~~~gd~viD~Svk~~L~~Lk~~L~~~ 227 (261)
+.++..+.|++.+..... .-.+....||+|- ||++|+. ++-.||+|+.++++++.+.|..+
T Consensus 182 v~P~D~~~v~~~~~~~~~--~~~~~l~~D~~l~~Ggc~iet---~~g~vDa~l~~r~~~l~~~l~~~ 243 (246)
T PRK05687 182 VNPDDLELVEQLLGAELS--LHGWRLLADPSLHRGGCRISA---EEGDVDASLETRWQEVCRLLAPG 243 (246)
T ss_pred ECHHHHHHHHHHHhhHHH--hCCeEEEeCCCcCCCCeEEEe---CCCceeccHHHHHHHHHHHHhcc
Confidence 677888888888775443 2347788899986 7899999 56789999999999999998744
No 27
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=94.02 E-value=0.69 Score=40.64 Aligned_cols=96 Identities=10% Similarity=0.091 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCcee
Q 024892 117 LTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAG 196 (261)
Q Consensus 117 ~~~nFL~lLien~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG 196 (261)
.+..-|.-+....+...|...+. -.......-.+.|++.. .....+.+.+.. + .+........+.+||
T Consensus 89 ~~~e~L~~i~~~~~~~~l~~ll~----~~~~~~~~~~~iV~~~e----~d~~~v~~~~~~--~--~~~~~~~~~~d~~GG 156 (194)
T COG1390 89 AVEEKLRNIASDPEYESLQELLI----EALEKLLGGELVVYLNE----KDKALVEQILRE--L--KIGVELGEGIDIIGG 156 (194)
T ss_pred HHHHHHHcCcCCcchHHHHHHHH----HHHHhcCCCCeEEEeCc----ccHHHHHHHHhh--c--ccchhccccCCCcce
Confidence 34444555556666555222222 22222223333355432 233334443332 1 233333334678999
Q ss_pred EEEEEecCCCEEEeccHHHHHHHHHHHhc
Q 024892 197 FTIRYGKWGSKLIDMSVKKQLEEIAAQLD 225 (261)
Q Consensus 197 ~iI~i~~~gd~viD~Svk~~L~~Lk~~L~ 225 (261)
++++..| |...+|.|+.+.|+.+...+.
T Consensus 157 vvv~~~d-G~i~~dnt~~sil~~~~e~~~ 184 (194)
T COG1390 157 VVVESRD-GKIRLDNTFESILERVLEELL 184 (194)
T ss_pred EEEEeCC-CceeecCcHHHHHHHHHHHHH
Confidence 9999987 999999999999999988775
No 28
>PRK06328 type III secretion system protein; Validated
Probab=93.44 E-value=0.97 Score=40.44 Aligned_cols=67 Identities=13% Similarity=0.253 Sum_probs=49.9
Q ss_pred ceeEEEEeecCCCHHHHHHHHHH---HHHHhCCceeEEEEeECCCCc-eeEEEEEecCCCEEEeccHHHHHHHHHHHhc
Q 024892 151 TEMAVVSSVVKLESEHLAQIAKQ---VQKLTGAKNVRIKTVIDPSLV-AGFTIRYGKWGSKLIDMSVKKQLEEIAAQLD 225 (261)
Q Consensus 151 ~~~~~VtSA~~Lseeq~~~L~~~---L~k~~g~k~I~l~~~VDpsLI-GG~iI~i~~~gd~viD~Svk~~L~~Lk~~L~ 225 (261)
...++|+ +++++.+.+.+. +...++ ....+....||+|- ||.+|+. +.-.||+|+.++|+.+++.|.
T Consensus 131 ~~~v~I~----VnP~D~~~v~~~~~~l~~~~~-~~~~~~I~~D~~L~~GgCiIET---~~G~VDasle~ql~~l~~al~ 201 (223)
T PRK06328 131 HKRIIIH----VNPKDLAIVEKSRPELKKIVE-YADSLIISPKADVTPGGCIIET---EAGIINAQLDVQLAALEKAFS 201 (223)
T ss_pred CCceEEE----ECHHHHHHHHHHHHHHHHhcc-CCCceEEEeCCCCCCCCeEEEe---CCceEEecHHHHHHHHHHHHH
Confidence 3445555 566666666555 444555 34578899999985 6699999 577899999999999999886
No 29
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=93.29 E-value=5.6 Score=35.30 Aligned_cols=58 Identities=19% Similarity=0.331 Sum_probs=41.0
Q ss_pred CCHHHHHH-HHHHHHHHh-CCceeEEEEeECCCCceeEEEEEecCCCEEEeccHHHHHHHHHHHhcc
Q 024892 162 LESEHLAQ-IAKQVQKLT-GAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLDL 226 (261)
Q Consensus 162 Lseeq~~~-L~~~L~k~~-g~k~I~l~~~VDpsLIGG~iI~i~~~gd~viD~Svk~~L~~Lk~~L~~ 226 (261)
.+++..+. +...+.+.+ . +.|.+... .|||+|+..| |+..+|+|-.+.++.+...+..
T Consensus 139 ~~~~~~~~~~~~~~~~~l~~-~gv~~~~~-----~gG~~v~~~d-g~~~vd~t~d~i~~~~~~~l~~ 198 (207)
T PRK01005 139 VSARAVNELLGKEVTKKLKE-KGVSVGSF-----VGGAQLKVEE-KNWVLDLSSQTLLDLLTRYLQK 198 (207)
T ss_pred CCHHHHHHHHHHHHHHHHHH-cCeEEecc-----CCceEEEecC-CeeEEeCcHHHHHHHHHHHhhH
Confidence 35554444 333434444 3 34555542 5999999987 9999999999999999998873
No 30
>PRK06937 type III secretion system protein; Reviewed
Probab=92.99 E-value=5.8 Score=34.65 Aligned_cols=69 Identities=23% Similarity=0.342 Sum_probs=51.0
Q ss_pred cCceeEEEEeecCCCHHHHHHHHHHHHHH---hCCceeEEEEeECCCCc-eeEEEEEecCCCEEEeccHHHHHHHHHHHh
Q 024892 149 TNTEMAVVSSVVKLESEHLAQIAKQVQKL---TGAKNVRIKTVIDPSLV-AGFTIRYGKWGSKLIDMSVKKQLEEIAAQL 224 (261)
Q Consensus 149 ~g~~~~~VtSA~~Lseeq~~~L~~~L~k~---~g~k~I~l~~~VDpsLI-GG~iI~i~~~gd~viD~Svk~~L~~Lk~~L 224 (261)
.+...++|+ +++++.+.+.+.+... ++ ..-.+....||+|- ||.+|+. ++=++|+|+.++|+.|++.|
T Consensus 128 ~~~~~v~I~----V~P~D~~~v~~~~~~~~~~~~-~~~~l~i~~D~~L~~Ggc~iET---~~G~vDasl~tql~~l~~al 199 (204)
T PRK06937 128 SNQKQVVVR----VNPDQAAAVREQIAKVLKDFP-EVGYLEVVADARLDQGGCILET---EVGIIDASLDGQLEALEQAF 199 (204)
T ss_pred ccCCeEEEE----ECHHHHHHHHHHHHHHHHhCC-CCccEEEEeCCCCCCCCeEEec---CCceEEccHHHHHHHHHHHH
Confidence 344455555 5667777777765543 33 23458888999975 7799999 56679999999999999988
Q ss_pred c
Q 024892 225 D 225 (261)
Q Consensus 225 ~ 225 (261)
.
T Consensus 200 ~ 200 (204)
T PRK06937 200 H 200 (204)
T ss_pred H
Confidence 6
No 31
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=91.47 E-value=1.8 Score=37.54 Aligned_cols=35 Identities=20% Similarity=0.311 Sum_probs=30.1
Q ss_pred CCCCceeEEEEEecCCCEEEeccHHHHHHHHHHHhc
Q 024892 190 DPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLD 225 (261)
Q Consensus 190 DpsLIGG~iI~i~~~gd~viD~Svk~~L~~Lk~~L~ 225 (261)
+++++|||+|...| |...+|+|+...++++...+.
T Consensus 142 ~~~~~GGvil~s~d-G~I~ld~~l~~~~~~~~~~iR 176 (185)
T PRK01194 142 DIDPYGGILAYSRD-GKRELDLRLSSIFENILEDLK 176 (185)
T ss_pred CccccccEEEEeCC-CcEEehhhHHHHHHHhHHHHH
Confidence 67899999999665 889999999999998877665
No 32
>PRK09098 type III secretion system protein HrpB; Validated
Probab=91.29 E-value=3.1 Score=37.54 Aligned_cols=90 Identities=19% Similarity=0.314 Sum_probs=59.9
Q ss_pred HHHcCChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHH---HhCCceeEEEEeECCCCc-eeEEEE
Q 024892 125 LIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQK---LTGAKNVRIKTVIDPSLV-AGFTIR 200 (261)
Q Consensus 125 Lien~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k---~~g~k~I~l~~~VDpsLI-GG~iI~ 200 (261)
+.+.+.-.++..+.+....++. +.-.++|. ++++..+.+...+.. ..| ....+...-||+|- ||.+|+
T Consensus 127 v~~~d~~~ll~~v~~al~~~~~---~~~~v~Ir----V~P~D~~~v~~~~~~~~~~~g-~~~~l~Iv~Dp~L~~GgCviE 198 (233)
T PRK09098 127 VLGEDRAALFARAAQTLERVVD---GASYLTVR----VHPADLDAARAAFGAAAAAGG-RNVPVEVVGDPRLAPGACVCE 198 (233)
T ss_pred HHhcCHHHHHHHHHHHHHHHhc---cCCcEEEE----ECHHHHHHHHHHHHHHHHhcC-CCcceEEEeCCCCCCCCeEEE
Confidence 3333444444444444444433 33334444 456666666665544 355 46788999999996 669999
Q ss_pred EecCCCEEEeccHHHHHHHHHHHhc
Q 024892 201 YGKWGSKLIDMSVKKQLEEIAAQLD 225 (261)
Q Consensus 201 i~~~gd~viD~Svk~~L~~Lk~~L~ 225 (261)
. ++=+||+|+.++|+.|++.|.
T Consensus 199 T---~~G~IDasl~~ql~~L~~al~ 220 (233)
T PRK09098 199 W---DFGVFDASLDTQLRALRRALA 220 (233)
T ss_pred e---CCCeEecCHHHHHHHHHHHHH
Confidence 9 577999999999999999886
No 33
>PRK13386 fliH flagellar assembly protein H; Provisional
Probab=90.11 E-value=13 Score=33.54 Aligned_cols=60 Identities=17% Similarity=0.178 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHHHHHhCCceeEEEEeECCCC-ceeEEEEEecCCCEEEeccHHHHHHHHHHHhccCC
Q 024892 162 LESEHLAQIAKQVQKLTGAKNVRIKTVIDPSL-VAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLDLGD 228 (261)
Q Consensus 162 Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsL-IGG~iI~i~~~gd~viD~Svk~~L~~Lk~~L~~~~ 228 (261)
++++..+.|.+.+.... -.+....||+| -||.+|+. ++-.+|+|+.+||+.+-..|....
T Consensus 169 vnP~D~~~l~~~~~e~~----~~~~l~~D~~l~~GgC~Iet---~~g~iDa~ietRl~~~~~~l~~~l 229 (236)
T PRK13386 169 LNPEEFGRLKDLAPEKV----QAWGLVADPSLSAGECRIVT---DTSEADAGCEHRLDACMDAVKEHL 229 (236)
T ss_pred ECHHHHHHHHHhhhccc----cCeEEEeCCCcCCCCEEEEe---CCceEeeCHHHHHHHHHHHHHHhc
Confidence 67888888887654422 24678889998 49999999 678999999999999888877544
No 34
>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.79 E-value=3.6 Score=37.11 Aligned_cols=62 Identities=24% Similarity=0.290 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHHHHhCCc-eeEEEEeECCCCc-eeEEEEEecCCCEEEeccHHHHHHHHHHHhccC
Q 024892 162 LESEHLAQIAKQVQKLTGAK-NVRIKTVIDPSLV-AGFTIRYGKWGSKLIDMSVKKQLEEIAAQLDLG 227 (261)
Q Consensus 162 Lseeq~~~L~~~L~k~~g~k-~I~l~~~VDpsLI-GG~iI~i~~~gd~viD~Svk~~L~~Lk~~L~~~ 227 (261)
+..++.+.|.+.+....+.. .. ++..-||+|- ||.+|+. +.=.||+|+.+||.+|++.+...
T Consensus 164 VnP~d~e~i~~~~~~~~~~~~~~-l~l~~D~~l~~GgC~IeT---e~G~iDasld~ql~~L~~~~~~~ 227 (234)
T COG1317 164 VNPDDLEIIRQQLDEELSLLGWR-LELVADPALSPGGCIIET---EFGIIDASLDTQLAALKRALLES 227 (234)
T ss_pred ECHHHHHHHHHHHHHHHhhcchh-eeeccCCCCCCCCeEEEe---cCccccccHHHHHHHHHHHHHhh
Confidence 46677777777775333211 22 7788899884 8999999 46679999999999999998744
No 35
>KOG1664 consensus Vacuolar H+-ATPase V1 sector, subunit E [Energy production and conversion]
Probab=79.21 E-value=33 Score=30.68 Aligned_cols=74 Identities=19% Similarity=0.287 Sum_probs=49.2
Q ss_pred CceeEEEEee---cCCCHHHHHHHHHHHHHHhCCceeEEEE----eECCCCceeEEEEEecCCCEEEeccHHHHHHHHHH
Q 024892 150 NTEMAVVSSV---VKLESEHLAQIAKQVQKLTGAKNVRIKT----VIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAA 222 (261)
Q Consensus 150 g~~~~~VtSA---~~Lseeq~~~L~~~L~k~~g~k~I~l~~----~VDpsLIGG~iI~i~~~gd~viD~Svk~~L~~Lk~ 222 (261)
..-.+.|++- .+|=+..+......+..+.|. .+++.. -..|+..||+++.-.| |..++|.|+.++|+-+.+
T Consensus 126 ~Ep~~Ivrcre~D~~lVe~~~~~a~~~y~~ka~~-~~e~~id~~~fL~~~~~GGVvl~s~d-gkI~v~NTLesRLeli~~ 203 (220)
T KOG1664|consen 126 LEPEVIVRCREKDLKLVEAALPKAIEEYKEKAGV-GVEVQIDKKDFLPPDVAGGVVLYSRD-GKIKVSNTLESRLELIAE 203 (220)
T ss_pred CCCeeEEeehhhhhHHHHHHHHHHHHHHHHHhcC-CceeeechhccCCccccCCeEEEcCC-CceEecCcHHHHHHHHHH
Confidence 4444555553 234455555555566666662 332222 2247889999999987 899999999999998887
Q ss_pred Hhc
Q 024892 223 QLD 225 (261)
Q Consensus 223 ~L~ 225 (261)
+..
T Consensus 204 q~l 206 (220)
T KOG1664|consen 204 QKL 206 (220)
T ss_pred Hhh
Confidence 764
No 36
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=69.38 E-value=62 Score=26.57 Aligned_cols=63 Identities=14% Similarity=0.246 Sum_probs=42.3
Q ss_pred HHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCc-eeEEEEEecCCCEEEecc
Q 024892 141 FEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLV-AGFTIRYGKWGSKLIDMS 212 (261)
Q Consensus 141 f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLI-GG~iI~i~~~gd~viD~S 212 (261)
..+.+....+...++|+ +++++.+.+.+.+....... .++..-||++. ||++|+. ++=.+|+|
T Consensus 103 v~~al~~~~~~~~v~I~----v~P~d~~~l~~~l~~~~~~~--~~~i~~D~~l~~G~c~vet---~~G~vdas 166 (166)
T TIGR02499 103 LRQLLRAVANQGRLTLR----VHPEQLDEVREALAERLALE--PWELEPDASLAPGACVLET---ESGVVDLS 166 (166)
T ss_pred HHHHHHhCCCCCceEEE----ECHHHHHHHHHHHHHHhccC--CeEEeeCCCCCCCCEEEEe---CCceeeCC
Confidence 33344444444455555 46677888888888776522 28888899864 7799998 46678876
No 37
>PRK06032 fliH flagellar assembly protein H; Validated
Probab=65.37 E-value=92 Score=27.05 Aligned_cols=99 Identities=10% Similarity=0.155 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHH---HhCCceeEEEEeECCC
Q 024892 116 PLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQK---LTGAKNVRIKTVIDPS 192 (261)
Q Consensus 116 ~~~~nFL~lLien~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k---~~g~k~I~l~~~VDps 192 (261)
.....++.-.+..+....+..++.+-...+. +.-.++|+ ++++..+.+.+.+.. ..| ....+....||+
T Consensus 95 ~iarkvi~~~l~~~p~a~v~~~v~eal~~l~---~~~~v~I~----v~P~d~~~l~~~l~~~~~~~~-~~~~~~l~~D~~ 166 (199)
T PRK06032 95 AVARKIAGAALAAEPLAEITAAVRDCLRHLV---ATPHLVVR----VNDALVEAARERLERLARESG-FEGRLVVLADPD 166 (199)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc---CCCcEEEE----ECHHHHHHHHHHHHHHHHhcC-cCccEEEeeCCC
Confidence 3445556555666655444444444444433 32345555 344555556555544 445 467789999999
Q ss_pred C-ceeEEEEEecCCCEEEeccHHHHHHHHHHHhc
Q 024892 193 L-VAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLD 225 (261)
Q Consensus 193 L-IGG~iI~i~~~gd~viD~Svk~~L~~Lk~~L~ 225 (261)
| -||.+|+. ++-.+|.++.+...++...+.
T Consensus 167 L~~G~c~vet---~~G~vd~d~~~~~~~I~~al~ 197 (199)
T PRK06032 167 MAPGDCRLEW---ADGGVVRDRAAIEARIEEAVG 197 (199)
T ss_pred CCCCCeEEEe---CCCeEecCHHHHHHHHHHHhh
Confidence 8 58999999 678899999999999888764
No 38
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=62.27 E-value=51 Score=33.17 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=15.1
Q ss_pred ecCCCHHHHHHHHHHHHHHh
Q 024892 159 VVKLESEHLAQIAKQVQKLT 178 (261)
Q Consensus 159 A~~Lseeq~~~L~~~L~k~~ 178 (261)
...|+++..++|++.+++..
T Consensus 477 ~~~l~~~~~~~L~~~i~~~~ 496 (501)
T TIGR00962 477 KKKLTEELEDKLKEALKNFK 496 (501)
T ss_pred cCCCCHHHHHHHHHHHHHHH
Confidence 35689888888888887643
No 39
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=60.70 E-value=60 Score=32.59 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=15.2
Q ss_pred eecCCCHHHHHHHHHHHHHHh
Q 024892 158 SVVKLESEHLAQIAKQVQKLT 178 (261)
Q Consensus 158 SA~~Lseeq~~~L~~~L~k~~ 178 (261)
+...|+++..+.|.+.+++..
T Consensus 456 ~~~~~~~~~~~~l~~~~~~~~ 476 (485)
T CHL00059 456 STKTFTEEAEALLKEAIQEQL 476 (485)
T ss_pred hcCCCCHHHHHHHHHHHHHHH
Confidence 346789888888888776643
No 40
>PF12685 SpoIIIAH: SpoIIIAH-like protein; InterPro: IPR024232 Stage III sporulation protein AH (SpoIIIAH) is a protein that is involved in forespore engulfment. It forms a channel with SpoIIIAH that is open on the forespore end and closed (or gated) on the mother cell end. This allows sigma-E-directed gene expression in the mother-cell compartment of the sporangium to trigger the activation of sigma-G forespore-specific gene expression by a pathway of intercellular signaling. This family of proteins is found in bacteria, archaea and eukaryotes and so must have a wider function than in sporulation. Proteins in this family are typically between 174 and 223 amino acids in length.; PDB: 3UZ0_A 3TUF_A.
Probab=59.49 E-value=26 Score=30.48 Aligned_cols=116 Identities=20% Similarity=0.149 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc---cHHHHHHhcCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcC
Q 024892 53 SYAIALVDLAKANNTLESTSADVEKIEKIFS---EKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAK 129 (261)
Q Consensus 53 ~YAkALfe~A~e~~~le~v~~eL~~l~~ll~---~~~l~~~L~sP~i~~eeK~~lL~~l~~~~~~s~~~~nFL~lLien~ 129 (261)
.+..+..........-..++.+++.=.+--. -..|+.++.||..+.++|.+..+.+.+-. -....-..++-|+..+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~f~~~rl~Re~~r~~~~e~L~~ii~~~~~s~~~k~~A~~~~~~l~-~~~~kE~~iE~llkak 147 (196)
T PF12685_consen 69 NEGEAVDTSSSSSSSGSDYFAEARLEREQSRSKQIETLKEIINNENASEEEKKEAQDKLLELT-EKMEKEMEIENLLKAK 147 (196)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHHHHHHHT-TTS-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTT
T ss_pred ccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhC
Confidence 4444444444333444445555555544332 27899999999999999999999987531 1122222333232221
Q ss_pred ChhhHHHHHHHHHHHHH-HHcCceeEEEEeecCCCHHHHHHHHHHHHHHhCC
Q 024892 130 RVDVVKDIVKEFEEVYN-KMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGA 180 (261)
Q Consensus 130 Rl~~L~~I~~~f~~l~~-~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~ 180 (261)
-|.+.+- -..+.+.+.|-+. .|++++..+|.+.+.+.+|.
T Consensus 148 ----------Gf~davv~~~~~~v~VvV~~~-~L~~~~~~~I~diV~~~~~v 188 (196)
T PF12685_consen 148 ----------GFEDAVVFIEDDSVDVVVKAD-KLSDAEAAQIIDIVMRETGV 188 (196)
T ss_dssp ----------S-SEEEEE-SSSEEEEEEE-S----HHHHHHHHHHHHHHHC-
T ss_pred ----------CCCceEEEeeCCEEEEEEeCC-CCCHHHHHHHHHHHHHHhCC
Confidence 0222211 1234444544444 49999999999999999984
No 41
>PRK01066 porphobilinogen deaminase; Provisional
Probab=56.79 E-value=41 Score=30.50 Aligned_cols=84 Identities=11% Similarity=0.104 Sum_probs=61.2
Q ss_pred cCceeEEEEe-ecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCceeEEEEEecCCCEEEeccHHHH------HHHHH
Q 024892 149 TNTEMAVVSS-VVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQ------LEEIA 221 (261)
Q Consensus 149 ~g~~~~~VtS-A~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~~~gd~viD~Svk~~------L~~Lk 221 (261)
.|...+.|-| ..+|.-.|-+.+.+.|++.+. .+.++.+ .|+. .||+..|.++..- -++|.
T Consensus 13 ~~~~~irIgTR~S~LAl~Qa~~v~~~L~~~~p--~~~~ei~---------~i~T--~GD~~~~~~L~~iGgkGlFtkele 79 (231)
T PRK01066 13 LGKRPLRIASRQSSLAVAQVHECLRLLRSFFP--KLWFQIS---------TTTT--QGDLDQKTPLHLVENTGFFTDDVD 79 (231)
T ss_pred CCCceEEEEeCCCHHHHHHHHHHHHHHHHhCC--CCcEEEE---------EEec--cCcccccccHHHcCCceeeHHHHH
Confidence 3444456655 578888999999999998774 2334332 2333 2898888876543 67899
Q ss_pred HHhccCCccccchhhhccccccccCCC
Q 024892 222 AQLDLGDVQLALSTWRRMDIRYSYPGL 248 (261)
Q Consensus 222 ~~L~~~~~~~~~~~~~~~~~~~~~~~~ 248 (261)
+.|.+|.++++||-+--+-. -||+
T Consensus 80 ~aLl~g~iDiAVHSlKDlPt---~~gl 103 (231)
T PRK01066 80 FLVLSGQCDLAIHSAKDLPE---PPKL 103 (231)
T ss_pred HHHHcCCCCEEEecCCcCCC---CCCC
Confidence 99999999999999988776 5665
No 42
>PRK07738 flagellar protein FlaG; Provisional
Probab=52.58 E-value=38 Score=27.55 Aligned_cols=41 Identities=12% Similarity=0.288 Sum_probs=34.0
Q ss_pred cCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCceeEEEEE
Q 024892 160 VKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRY 201 (261)
Q Consensus 160 ~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI~i 201 (261)
.++++++++++.+.+.+.+......+.+.+|.+. |-++|+|
T Consensus 41 k~~s~eel~~aveklN~~l~~~~~~L~F~vdeet-~~~vVkV 81 (117)
T PRK07738 41 YEVSKEDLEEVVDGMNELLEPSQTSLKFELHEKL-NEYYVQV 81 (117)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCceEEEEecCC-CcEEEEE
Confidence 4788899999999888877655678888999886 9999988
No 43
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=49.69 E-value=39 Score=26.20 Aligned_cols=42 Identities=12% Similarity=0.192 Sum_probs=30.3
Q ss_pred cCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCceeEEEEEe
Q 024892 160 VKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYG 202 (261)
Q Consensus 160 ~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~ 202 (261)
.+.+.+++++..+.|.+.+......|.+.+|++. |-++|+|=
T Consensus 32 ~~~~~e~l~~~v~~ln~~~~~~~~~l~F~vde~~-~~~vVkVi 73 (107)
T PF03646_consen 32 KEPSKEELEEAVEKLNEFLQALNTSLRFSVDEES-GRVVVKVI 73 (107)
T ss_dssp ----HHHHHHHHHHHHHHHTTSS--EEEEEEEET-TEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCceEEEEecCC-CcEEEEEE
Confidence 4688899999999999888756778999999884 88888883
No 44
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=46.79 E-value=4 Score=29.69 Aligned_cols=13 Identities=31% Similarity=0.547 Sum_probs=9.8
Q ss_pred ccchhhhcccccc
Q 024892 231 LALSTWRRMDIRY 243 (261)
Q Consensus 231 ~~~~~~~~~~~~~ 243 (261)
++-|+||+++|||
T Consensus 41 ~t~HtwQSwR~Ry 53 (65)
T PF08914_consen 41 PTRHTWQSWRDRY 53 (65)
T ss_dssp SSS--SHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 4689999999998
No 45
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=42.29 E-value=2.6e+02 Score=28.11 Aligned_cols=146 Identities=16% Similarity=0.169 Sum_probs=70.9
Q ss_pred cceeccCCCCcccccCCCcccCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--cHHH
Q 024892 10 LSLQSNLFPSGRAASRNPLSATIPSGPRRRGAHGIRMSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFS--EKQI 87 (261)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~~iA~~YAkALfe~A~e~~~le~v~~eL~~l~~ll~--~~~l 87 (261)
+-|+++||-+|--..-|+= -|-.|-+|+--+++...++..--..|-+ +.|+..+.++-. |+.-
T Consensus 342 Ifl~t~LFn~G~rPAInvG----lSVSRvGssAQ~kamkkvag~lrl~laq-----------Yrel~afsqf~sdLd~~T 406 (504)
T COG0056 342 IFLETDLFNAGIRPAINVG----LSVSRVGSAAQIKAMKKVAGSLRLILAQ-----------YRELEAFSQFGSDLDKAT 406 (504)
T ss_pred EEeehhhhhcCCCccccCC----ceeeccchHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhhcchhCHHH
Confidence 4578999999865544431 1234555555555555555444333322 344444444322 3333
Q ss_pred HHHhcCCCCCHHHHHHHHHHHhhcCCC---CHHHHHHHHHHHHcCChhhH--HHHHHH---HHHHHHHHcCceeEEEEee
Q 024892 88 HEFFVNPTIDIEKKREMVDEICKSSAL---QPLTGNFLNILIDAKRVDVV--KDIVKE---FEEVYNKMTNTEMAVVSSV 159 (261)
Q Consensus 88 ~~~L~sP~i~~eeK~~lL~~l~~~~~~---s~~~~nFL~lLien~Rl~~L--~~I~~~---f~~l~~~~~g~~~~~VtSA 159 (261)
++.| ++-+.+.+++++..+ +.+..-.+-.++.+|-+..+ ..+.+. +...++.......-.|.+.
T Consensus 407 ~~~l--------~~G~r~~ellkQ~~~~p~sv~~qv~ilya~~~G~ld~v~v~~v~~fe~~l~~~~~~~~~~~~~~I~~~ 478 (504)
T COG0056 407 RKQL--------ERGKRLTELLKQPQYSPLSVEEQVLILYAGTNGYLDDVPVEKVADFEKELLAYLRSDHKELLEEIRTT 478 (504)
T ss_pred HHHH--------HccHHHHHHhcCCCCCCccHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Confidence 3333 223445555544322 23333344445555555544 222221 1111222222233445566
Q ss_pred cCCCHHHHHHHHHHHHHHh
Q 024892 160 VKLESEHLAQIAKQVQKLT 178 (261)
Q Consensus 160 ~~Lseeq~~~L~~~L~k~~ 178 (261)
..|+++..+.+++.+++..
T Consensus 479 ~~l~~~~e~~l~~~i~~f~ 497 (504)
T COG0056 479 KELDDEIEAKLKAAIKEFK 497 (504)
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 7899988888888776654
No 46
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=39.48 E-value=97 Score=31.32 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=13.0
Q ss_pred cceeccCCCCcccccCCCc
Q 024892 10 LSLQSNLFPSGRAASRNPL 28 (261)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~ 28 (261)
+-|.+.||-+|.-..-||+
T Consensus 318 IvLsr~L~~~G~~PAIDvl 336 (507)
T PRK07165 318 IVTSSDLFASGKLPAIDID 336 (507)
T ss_pred EEEcHHHHhCCCCCCcCCc
Confidence 3466777877777666765
No 47
>PRK08868 flagellar protein FlaG; Provisional
Probab=38.26 E-value=72 Score=26.89 Aligned_cols=41 Identities=15% Similarity=0.215 Sum_probs=32.3
Q ss_pred cCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCceeEEEEE
Q 024892 160 VKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRY 201 (261)
Q Consensus 160 ~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI~i 201 (261)
.+++++++++..+.|.+.+......|.+.+|++. |-++|+|
T Consensus 66 ~e~~~eel~~aVeklNe~~~~~n~~L~F~vdeet-gr~VVkV 106 (144)
T PRK08868 66 QELNREELEKMVEQMNEFVKSINKGLSFRVDEES-GRDVVTI 106 (144)
T ss_pred cccCHHHHHHHHHHHHHHHHhhcCceEEEEecCC-CCEEEEE
Confidence 3578888888888888776545567888999884 8888887
No 48
>COG1334 FlaG Uncharacterized flagellar protein FlaG [Cell motility and secretion]
Probab=37.77 E-value=43 Score=27.36 Aligned_cols=44 Identities=23% Similarity=0.363 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhCCceeEEEEeECCCCceeEEEEEecCCCEEEeccHHH
Q 024892 164 SEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKK 215 (261)
Q Consensus 164 eeq~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~~~gd~viD~Svk~ 215 (261)
.++++.+.+.+.+....-+..+++.+|.+ +|+++|.| +|.+-..
T Consensus 48 ~e~L~~~v~~ink~~k~~nt~l~F~~dd~-lg~~vVkI-------~d~~Tge 91 (120)
T COG1334 48 KEKLALIVEDINKLLKSLNTHLNFSYDDE-LGELVVKI-------IDKDTGE 91 (120)
T ss_pred HHHHHHHHHHHHHHHHhhcCceEEEEecc-cCcEEEEE-------EECCCCc
Confidence 34566666666665433334667777777 59999998 6666443
No 49
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.04 E-value=3.3e+02 Score=27.40 Aligned_cols=85 Identities=15% Similarity=0.171 Sum_probs=57.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH--HHhc-cHHHHHH----------hcCCCCCHHHHHHHHHHHh
Q 024892 43 GIRMSATVATSYAIALVDLAKANNTLESTSADVEKIE--KIFS-EKQIHEF----------FVNPTIDIEKKREMVDEIC 109 (261)
Q Consensus 43 ~~~M~~~iA~~YAkALfe~A~e~~~le~v~~eL~~l~--~ll~-~~~l~~~----------L~sP~i~~eeK~~lL~~l~ 109 (261)
|.+..+.+-.+--+-||.....-...-++.+..+.+. .+++ ||.+..- -.|+.++.|||.++|.+++
T Consensus 103 G~~tSekvKtkiIelLfsWtv~lpe~~KikdaYqmLKkqgIik~DP~lp~d~~~~p~ppP~pkssvFddEEksklL~rLL 182 (594)
T KOG1086|consen 103 GSRTSEKVKTKIIELLFSWTVSLPEEPKIKDAYQMLKKQGIIKSDPKLPVDETPVPAPPPRPKSSVFDDEEKSKLLARLL 182 (594)
T ss_pred chhhhHHHHHHHHHHHhhheecCcccchHHHHHHHHHhcCcccCCCCCCCCCccCCCCCCCCCccccCcHHHHHHHHHHH
Confidence 5666677777888888877665444444544444444 3665 7777654 3466788999999999999
Q ss_pred hcCCCC---HHHHHHHHHHHHc
Q 024892 110 KSSALQ---PLTGNFLNILIDA 128 (261)
Q Consensus 110 ~~~~~s---~~~~nFL~lLien 128 (261)
+.. -+ +...++++-|++.
T Consensus 183 kSn-~PeDLqaANkLIK~lVke 203 (594)
T KOG1086|consen 183 KSN-HPEDLQAANKLIKTLVKE 203 (594)
T ss_pred hcC-ChHHHHHHHHHHHHHHHH
Confidence 873 22 3467888888764
No 50
>PF14675 FANCI_S1: FANCI solenoid 1; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=36.99 E-value=1.1e+02 Score=27.38 Aligned_cols=90 Identities=17% Similarity=0.268 Sum_probs=57.8
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhhcC------CCCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCce----eE
Q 024892 85 KQIHEFFVNPTIDIEKKREMVDEICKSS------ALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTE----MA 154 (261)
Q Consensus 85 ~~l~~~L~sP~i~~eeK~~lL~~l~~~~------~~s~~~~nFL~lLien~Rl~~L~~I~~~f~~l~~~~~g~~----~~ 154 (261)
..+..++.+-.+++++...++.+++..+ ++++.+..+|.+-....+...|..|.+.|.+...++...- ..
T Consensus 114 ~~l~~mfrd~~Ls~~e~~~vv~Kv~~~l~~l~l~elPpLvyQLL~Lsskg~k~~vL~gl~~~F~~~~~~~~~~~~~~~~~ 193 (223)
T PF14675_consen 114 IQLASMFRDVPLSKEELEFVVEKVLSMLKKLDLQELPPLVYQLLLLSSKGSKKLVLEGLIKYFNRLDKQKNESQSGSNST 193 (223)
T ss_dssp HHHHHHGGGS---HHHHHHHHHHHHHHHTTS-GGGHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCChhhccHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhhhhhhccCccc
Confidence 4677788887799999999999998753 3567778888777777778889999999998876543322 22
Q ss_pred EEEeecCCCHHHHHHHHHHH
Q 024892 155 VVSSVVKLESEHLAQIAKQV 174 (261)
Q Consensus 155 ~VtSA~~Lseeq~~~L~~~L 174 (261)
.+-+....+++++..++..+
T Consensus 194 d~~~i~~~~~~elr~vEgTv 213 (223)
T PF14675_consen 194 DLDSIDSVSDKELRQVEGTV 213 (223)
T ss_dssp --------SHHHHHHHHHHH
T ss_pred chhhhccCCHHHHHHHHhHH
Confidence 33334456777777766543
No 51
>smart00183 NAT_PEP Natriuretic peptide. Atrial natriuretic peptides are vertebrate hormones important in the overall control of cardiovascular homeostasis and sodium and water balance in general.
Probab=36.74 E-value=15 Score=21.95 Aligned_cols=8 Identities=63% Similarity=1.319 Sum_probs=6.7
Q ss_pred ccCCCCcc
Q 024892 244 SYPGLGCS 251 (261)
Q Consensus 244 ~~~~~~~~ 251 (261)
|.|||||.
T Consensus 18 s~SglGC~ 25 (26)
T smart00183 18 SMSGLGCX 25 (26)
T ss_pred cccccCcC
Confidence 67899995
No 52
>cd02413 40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=35.77 E-value=95 Score=23.27 Aligned_cols=40 Identities=8% Similarity=0.096 Sum_probs=30.7
Q ss_pred cCceeEEEEeecCC-----CHHHHHHHHHHHHHHhCCceeEEEEe
Q 024892 149 TNTEMAVVSSVVKL-----ESEHLAQIAKQVQKLTGAKNVRIKTV 188 (261)
Q Consensus 149 ~g~~~~~VtSA~~L-----seeq~~~L~~~L~k~~g~k~I~l~~~ 188 (261)
.+.+.+.|+||.|= .-+.+++|.+.|++.++..+..++..
T Consensus 29 ~~~i~I~I~tarPg~vIG~~G~~i~~L~~~L~k~~~~~~~~i~v~ 73 (81)
T cd02413 29 PTRTEIIIRATRTQNVLGEKGRRIRELTSLVQKRFNFPEGSVELY 73 (81)
T ss_pred CCeEEEEEEeCCCceEECCCchhHHHHHHHHHHHhCCCCCeEEEE
Confidence 34567788899883 56889999999999998656666653
No 53
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=35.72 E-value=1e+02 Score=31.06 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=15.9
Q ss_pred eecCCCHHHHHHHHHHHHHHh
Q 024892 158 SVVKLESEHLAQIAKQVQKLT 178 (261)
Q Consensus 158 SA~~Lseeq~~~L~~~L~k~~ 178 (261)
+...|+++..+.|.+.+++..
T Consensus 477 ~~~~l~~~~~~~l~~~~~~~~ 497 (502)
T PRK13343 477 SPRELDEAWLAALEEILREAG 497 (502)
T ss_pred hcCCCCHHHHHHHHHHHHHHH
Confidence 346799998888888887643
No 54
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=34.53 E-value=2.2e+02 Score=22.13 Aligned_cols=37 Identities=14% Similarity=0.182 Sum_probs=30.3
Q ss_pred cHHHHHHhcCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHH
Q 024892 84 EKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLN 123 (261)
Q Consensus 84 ~~~l~~~L~sP~i~~eeK~~lL~~l~~~~~~s~~~~nFL~ 123 (261)
...+..++.|+.++..++.+-|+.+... +++. .+.|.
T Consensus 67 ~~~l~~I~~n~~lT~~q~~~~I~~l~~~--~~~e-~~~l~ 103 (113)
T PF02520_consen 67 FAKLSAILDNKSLTRQQQQEAIDALRKQ--YPEE-VDTLF 103 (113)
T ss_pred HHHHHHHHcCcccCHHHHHHHHHHHHHH--CCHH-HHHHH
Confidence 4788899999999999999999999986 5666 34333
No 55
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=33.94 E-value=2.4e+02 Score=28.45 Aligned_cols=19 Identities=16% Similarity=0.281 Sum_probs=14.4
Q ss_pred cCCCHHHHHHHHHHHHHHh
Q 024892 160 VKLESEHLAQIAKQVQKLT 178 (261)
Q Consensus 160 ~~Lseeq~~~L~~~L~k~~ 178 (261)
..|+++..++|.+.+++..
T Consensus 479 ~~l~~~~~~~L~~~i~~~~ 497 (502)
T PRK09281 479 KDLSDEIEAKLKAAIEEFK 497 (502)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 5688888888888777643
No 56
>COG3372 Predicted nuclease of restriction endonuclease-like fold [General function prediction only]
Probab=33.42 E-value=1.9e+02 Score=28.37 Aligned_cols=53 Identities=17% Similarity=0.362 Sum_probs=39.5
Q ss_pred HHHHHHhcC--CCCCHHHHHHHHHHHhhcCCCCHH--HHHHHHHHHHcCChhhHHHH
Q 024892 85 KQIHEFFVN--PTIDIEKKREMVDEICKSSALQPL--TGNFLNILIDAKRVDVVKDI 137 (261)
Q Consensus 85 ~~l~~~L~s--P~i~~eeK~~lL~~l~~~~~~s~~--~~nFL~lLien~Rl~~L~~I 137 (261)
++++.+|.+ |..+++++..++..+.+.+++++. -..+..-+-+|+.+.-++.|
T Consensus 85 ~~~R~~lFe~g~~~s~eer~~vl~~aA~~fsvs~eeie~alyaDleeek~L~~~p~i 141 (396)
T COG3372 85 REVRRFLFERGPALSEEERQRVLQEAADHFSVSPEEIEDALYADLEEEKILVEFPDI 141 (396)
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHhCCCHHHHHHHHHhccchhheeccCCCC
Confidence 678887754 888999999999999887666543 34555667777777777665
No 57
>PF03937 Sdh5: Flavinator of succinate dehydrogenase; InterPro: IPR005631 This entry represents a group of uncharacterised small proteins found in both eukaryotes and prokaryotes, including NMA1147 from Neisseria meningitidis [] and YgfY from Escherichia coli []. YgfY may be involved in transcriptional regulation. The structure of these proteins consists of a complex bundle of five alpha-helices, which is composed of an up-down 3-helix bundle plus an orthogonal 2-helix bundle. ; PDB: 2LM4_A 1PUZ_A 2JR5_A 1X6I_A 1X6J_A.
Probab=33.08 E-value=98 Score=22.68 Aligned_cols=52 Identities=8% Similarity=0.273 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--cHHHHHHhcCCCCCHHHHH-HHHHH
Q 024892 48 ATVATSYAIALVDLAKANNTLESTSADVEKIEKIFS--EKQIHEFFVNPTIDIEKKR-EMVDE 107 (261)
Q Consensus 48 ~~iA~~YAkALfe~A~e~~~le~v~~eL~~l~~ll~--~~~l~~~L~sP~i~~eeK~-~lL~~ 107 (261)
+.+-.+|+.+-++...+ +++..+..+++ |+++-..+.....|.+... +++..
T Consensus 18 DllL~~f~~~~~~~l~~--------~el~~fe~lL~~~D~dL~~wl~g~~~p~~~~~~~li~~ 72 (74)
T PF03937_consen 18 DLLLGRFADAHLDSLSE--------EELDAFERLLDLEDPDLYDWLMGREEPEDPELAALIEK 72 (74)
T ss_dssp HHHHHHHHHHHHHHS-H--------HHHHHHHHHHTS-HHHHHHHHCTSSEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCH--------HHHHHHHHHHcCCCHHHHHHHhCCCCCCChhHHHHHHH
Confidence 78999999998865554 57888888886 6999999988766655554 55544
No 58
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=32.47 E-value=4.1e+02 Score=27.13 Aligned_cols=143 Identities=14% Similarity=0.260 Sum_probs=78.0
Q ss_pred CCCHHHHHHHHHHHHHHhccHH--------------HHHHhcCCCCCHHHHHHHHHHHhhcCCCCHH------HHHHHHH
Q 024892 65 NNTLESTSADVEKIEKIFSEKQ--------------IHEFFVNPTIDIEKKREMVDEICKSSALQPL------TGNFLNI 124 (261)
Q Consensus 65 ~~~le~v~~eL~~l~~ll~~~~--------------l~~~L~sP~i~~eeK~~lL~~l~~~~~~s~~------~~nFL~l 124 (261)
.+-.+...+.|..+..+|.+++ ++.+..+|.=+ ..|..++.+.-. +..- .+..++-
T Consensus 84 ~s~~~t~~~~L~~le~ll~~~~~~sl~~~L~~ff~s~q~la~~P~~~-a~r~~vl~~a~~---l~~~in~~~~~L~~l~~ 159 (552)
T COG1256 84 SSYLDTRASQLSQLESLLSEPSESSLSTLLNDFFNSLQELASNPSDT-AARQAVLSKAQT---LVNQINNTYEQLTDLRK 159 (552)
T ss_pred hhHHHHHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHHHhCcccH-HHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4456677788888888886433 44455677744 666666666421 2222 2333444
Q ss_pred HHHcCChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCH--HHHHHHHHHHHHHhCCceeEEEEeECCCCceeEEEEEe
Q 024892 125 LIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLES--EHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYG 202 (261)
Q Consensus 125 Lien~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lse--eq~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~ 202 (261)
.+...--..+.+|=....++.+-...+..++.- -.+.++ +|+++|.+.|++..| |.+ ..++. |++.|.++
T Consensus 160 ~i~~~I~~~V~~vNsLl~qIa~lN~qI~~~~~~-g~~~NdLlDqRD~Lv~eLs~~i~---i~V--~~~~~--~~~~~~~~ 231 (552)
T COG1256 160 DINAEIAATVDEVNSLLKQIADLNKQIRKVKAA-GNDPNDLLDQRDQLVDELSQLIG---ISV--SKRED--GDYNLTTG 231 (552)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCchhHHHHHHHHHHHHHhhcc---eEE--EEcCC--CCeEEEec
Confidence 444433333444333333332223333333222 223333 788999998888877 333 33333 66788877
Q ss_pred cCCCEEEeccHHHHHHHH
Q 024892 203 KWGSKLIDMSVKKQLEEI 220 (261)
Q Consensus 203 ~~gd~viD~Svk~~L~~L 220 (261)
+ |-.+++.+.+..|..+
T Consensus 232 ~-G~~lv~g~~~~~~~~~ 248 (552)
T COG1256 232 N-GTTLVEGSEAKVFAPL 248 (552)
T ss_pred C-Ceeecccccceeeeec
Confidence 5 7778888877664433
No 59
>PF14480 DNA_pol3_a_NI: DNA polymerase III polC-type N-terminus I
Probab=31.97 E-value=1e+02 Score=22.01 Aligned_cols=43 Identities=16% Similarity=0.062 Sum_probs=33.9
Q ss_pred HHHHcCceeEEEEeecCCCHHHHHHHHHHHHHHhCC-ceeEEEE
Q 024892 145 YNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGA-KNVRIKT 187 (261)
Q Consensus 145 ~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~-k~I~l~~ 187 (261)
+.+..+.....+.+...|+.+....+.+.|++.++. .+|.+..
T Consensus 31 v~k~~~~w~f~l~~~~~l~~~~~~~~~~~l~~~F~~ia~v~~~i 74 (76)
T PF14480_consen 31 VHKKSRKWRFHLSSPHILPFEVYQKFEEKLKKQFSHIAKVELII 74 (76)
T ss_pred EEccCCEEEEEEEeCCcCCHHHHHHHHHHHHHHhCCcCeEEEEE
Confidence 345567788889999999999999999999999873 2455444
No 60
>PF07560 DUF1539: Domain of Unknown Function (DUF1539); InterPro: IPR011436 This domain is found in a small number of Chlamydia proteins of unknown function. It occurs together with IPR013044 from INTERPRO.
Probab=31.50 E-value=55 Score=27.00 Aligned_cols=26 Identities=35% Similarity=0.494 Sum_probs=21.8
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHhhc
Q 024892 86 QIHEFFVNPTIDIEKKREMVDEICKS 111 (261)
Q Consensus 86 ~l~~~L~sP~i~~eeK~~lL~~l~~~ 111 (261)
.+-.+|.||.||.++|.+++..+..-
T Consensus 71 ~l~~aL~dp~Is~erK~~~l~yIaSy 96 (126)
T PF07560_consen 71 QLIKALQDPTISKERKREALNYIASY 96 (126)
T ss_pred HHHHHhcCCCCChHHHHHHHHHHHHH
Confidence 45567889999999999999998753
No 61
>PF01788 PsbJ: PsbJ; InterPro: IPR002682 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbJ found in PSII. PsbJ is one of the most hydrophobic proteins in the thylakoid membrane, and is located in a gene cluster with PsbE, PsbF and PsbL (PsbEFJL). Both PsbJ and PsbL (IPR003372 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbJ cause the light-harvesting antenna to remain detached from the PSII dimers []. In addition, both PsbJ and PsbL are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_J 3ARC_J 3A0B_J 3KZI_J 2AXT_J 3PRQ_J 4FBY_b 3BZ2_J 1S5L_j 3PRR_J ....
Probab=30.10 E-value=24 Score=23.33 Aligned_cols=8 Identities=75% Similarity=1.244 Sum_probs=5.1
Q ss_pred ccCCCCcc
Q 024892 244 SYPGLGCS 251 (261)
Q Consensus 244 ~~~~~~~~ 251 (261)
||+|+|.|
T Consensus 32 sYsGlGSs 39 (40)
T PF01788_consen 32 SYSGLGSS 39 (40)
T ss_dssp TTTSTTS-
T ss_pred ccCCcccC
Confidence 67777765
No 62
>TIGR01160 SUI1_MOF2 translation initiation factor SUI1, eukaryotic. Alternate name: MOF2. A similar protein family (see TIGRFAMs model TIGR01158) is found in prokaryotes. The human proteins complements a yeast SUI1 mutatation.
Probab=29.83 E-value=1.8e+02 Score=23.41 Aligned_cols=51 Identities=20% Similarity=0.258 Sum_probs=35.7
Q ss_pred HcCceeEEEEeecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCceeEEEEEecCCC
Q 024892 148 MTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGS 206 (261)
Q Consensus 148 ~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~~~gd 206 (261)
.++.-.+++++-.+ .+..+++|.+.|+++++. --.+ +-||+ ||-.|++. ||
T Consensus 35 R~grK~VTiI~Gl~-~~~dlk~l~K~lKkk~~c-GGsV--k~~~~--~~~~IelQ--GD 85 (110)
T TIGR01160 35 RNGRKTLTTVQGLP-KEYDLKKIVKALKKEFAC-NGTV--IEDPE--MGEVIQLQ--GD 85 (110)
T ss_pred ccCCccEEEEeccC-ChHHHHHHHHHHHHHhCC-CceE--EeCCC--CCCEEEEe--Cc
Confidence 34445677777777 688899999999999974 2222 34566 56677775 76
No 63
>PRK15322 invasion protein OrgB; Provisional
Probab=29.54 E-value=4.2e+02 Score=23.77 Aligned_cols=100 Identities=9% Similarity=0.186 Sum_probs=67.8
Q ss_pred CCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCC-HHHHHHHHHHHHHHhCCceeEEEEeECCC
Q 024892 114 LQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLE-SEHLAQIAKQVQKLTGAKNVRIKTVIDPS 192 (261)
Q Consensus 114 ~s~~~~nFL~lLien~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Ls-eeq~~~L~~~L~k~~g~k~I~l~~~VDps 192 (261)
+-.....+|...+++ -..|-.++++|........+...+ + .|-+ .+-..+|...|.+..+ .++.+.++-++
T Consensus 77 ie~~~r~lls~~Ld~--pd~LL~~le~Wl~~l~~~~~pL~l--~--lP~~ak~~~~~L~~~l~e~w~-~~~~i~yhd~~- 148 (210)
T PRK15322 77 IQIYARELFSAAVDH--PETLLTVLDEWLRDFDKPEGQLFL--T--LPVNAKKDHQKLMVLLMENWP-GTFNLKYHQEQ- 148 (210)
T ss_pred HHHHHHHHHHHHccC--HHHHHHHHHHHHHhCccccCceeE--e--cChhhhhhHHHHHHHHHHhcC-CCeEEEEcCCC-
Confidence 445666777777766 336666777766655544433333 2 2322 2444567777777777 47888888665
Q ss_pred CceeEEEEEecCCCEEEeccHHHHHHHHHHHhccC
Q 024892 193 LVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLDLG 227 (261)
Q Consensus 193 LIGG~iI~i~~~gd~viD~Svk~~L~~Lk~~L~~~ 227 (261)
+|+++. |+.+..+|-...++.-.+++...
T Consensus 149 ---rFV~~~---g~qIaEFsPq~~v~~a~~~l~~~ 177 (210)
T PRK15322 149 ---RFIMSC---GDQIAEFSPEQFVETAVGVIKHH 177 (210)
T ss_pred ---ceEEEe---CCchhccCHHHHHHHHHHHHHhC
Confidence 599999 79999999999998888887643
No 64
>PF09921 DUF2153: Uncharacterized protein conserved in archaea (DUF2153); InterPro: IPR014450 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=29.15 E-value=2.8e+02 Score=22.88 Aligned_cols=62 Identities=16% Similarity=0.375 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHHHHHhcc-HHHHHHhcCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHc
Q 024892 65 NNTLESTSADVEKIEKIFSE-KQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDA 128 (261)
Q Consensus 65 ~~~le~v~~eL~~l~~ll~~-~~l~~~L~sP~i~~eeK~~lL~~l~~~~~~s~~~~nFL~lLien 128 (261)
.+.++-++.-=..+.-+... ..|-+.|.||+|..-.=.++|.+|-+. .-..+.+||++=++|
T Consensus 26 ~DRL~LIl~sr~afqhm~RTlKaFd~WLqdP~ItshMPreML~dv~~~--~~~il~~llelDI~H 88 (126)
T PF09921_consen 26 ADRLDLILSSRAAFQHMMRTLKAFDQWLQDPMITSHMPREMLEDVWET--LREILEQLLELDIRH 88 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHhcCCHHHHHHHHHH--HHHHHHHHHHHhHHH
Confidence 33444444443444444443 788899999999776666677666543 335556666655544
No 65
>CHL00108 psbJ photosystem II protein J
Probab=28.62 E-value=26 Score=23.18 Aligned_cols=8 Identities=75% Similarity=1.244 Sum_probs=5.9
Q ss_pred ccCCCCcc
Q 024892 244 SYPGLGCS 251 (261)
Q Consensus 244 ~~~~~~~~ 251 (261)
||+|+|.|
T Consensus 32 sY~GlGSs 39 (40)
T CHL00108 32 SYSGLGSS 39 (40)
T ss_pred cccccCCC
Confidence 78888765
No 66
>PHA01351 putative minor structural protein
Probab=28.43 E-value=1.5e+02 Score=31.43 Aligned_cols=47 Identities=13% Similarity=0.231 Sum_probs=39.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHcCChh-hHHHHHHHHHHHHHHHc
Q 024892 103 EMVDEICKSSALQPLTGNFLNILIDAKRVD-VVKDIVKEFEEVYNKMT 149 (261)
Q Consensus 103 ~lL~~l~~~~~~s~~~~nFL~lLien~Rl~-~L~~I~~~f~~l~~~~~ 149 (261)
+++.+||....++..+.|.-.-.+.|+|++ ++.+|+.--.-++++++
T Consensus 987 q~lqkvfaeyqvp~dlq~~y~eyarnrrl~~yiseii~tinllfer~k 1034 (1070)
T PHA01351 987 QLLQKVFAEFQIPQELQNTYFEYARNRRVSRYVNEIITTINLLFEKHK 1034 (1070)
T ss_pred HHHHHHHHhhcCcHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcc
Confidence 789999998889999999999999999986 56778777776666654
No 67
>PF14674 FANCI_S1-cap: FANCI solenoid 1 cap; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=28.09 E-value=91 Score=21.88 Aligned_cols=49 Identities=14% Similarity=0.339 Sum_probs=32.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhccHHHHHHhcCCCCCHHHHHHHHHHHhh
Q 024892 57 ALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICK 110 (261)
Q Consensus 57 ALfe~A~e~~~le~v~~eL~~l~~ll~~~~l~~~L~sP~i~~eeK~~lL~~l~~ 110 (261)
-++.+|.+.. . ++|+.+.+-+++.++..++.+..+.-.+=-.+++.+|+
T Consensus 4 kIlsLa~~~t-~----e~LQ~~Lq~L~edeLt~~lt~~AlKGk~~Gallr~IfK 52 (53)
T PF14674_consen 4 KILSLAAEDT-T----EELQKFLQTLKEDELTDLLTNQALKGKDVGALLRGIFK 52 (53)
T ss_dssp HHHHHHHH-T-T----HHHHHHHHHH-S-SHHHHHHHHHH-HHHHHTHHHHHHT
T ss_pred HHHHHhhcCC-H----HHHHHHHHHcchhHHHHHHHHHhhcchHHHHHHHHHhc
Confidence 3455665533 2 46666667777788999998887777777778888775
No 68
>PRK02565 photosystem II reaction center protein J; Provisional
Probab=27.76 E-value=27 Score=22.94 Aligned_cols=8 Identities=75% Similarity=1.240 Sum_probs=5.9
Q ss_pred ccCCCCcc
Q 024892 244 SYPGLGCS 251 (261)
Q Consensus 244 ~~~~~~~~ 251 (261)
||+|+|.|
T Consensus 31 sY~GlGSs 38 (39)
T PRK02565 31 SYAGLGSS 38 (39)
T ss_pred cccccCCC
Confidence 77888765
No 69
>PF00212 ANP: Atrial natriuretic peptide; InterPro: IPR000663 Atrial natriuretic peptides (ANPs) are vertebrate hormones that play an important role in the control of cardiovascular homeostatis, and sodium and water balance in general [, , ]. There are different NPs that vary in length but share a common core. All are processed from a single precursor. A disulphide bond resident in the C-terminal section is required for full activity of atriopeptins. The family of NPs includes structurally-related peptides that elicit similar pharmacological spectra. Amongst these are brain natriuretic peptide (BNP); C-type natriuretic peptide (CNP); ventricular natriuretic peptide (VNP) []; and green mamba natriuretic peptide (DNP) [].; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 3N57_C 1YK0_E 1T34_H 1JDP_H 1YK1_E 1Q01_A.
Probab=27.74 E-value=23 Score=22.51 Aligned_cols=7 Identities=71% Similarity=1.436 Sum_probs=2.0
Q ss_pred ccCCCCc
Q 024892 244 SYPGLGC 250 (261)
Q Consensus 244 ~~~~~~~ 250 (261)
|.|||||
T Consensus 27 s~SglGC 33 (33)
T PF00212_consen 27 SVSGLGC 33 (33)
T ss_dssp SS--S--
T ss_pred ccccCCC
Confidence 5678887
No 70
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=26.99 E-value=2.5e+02 Score=20.32 Aligned_cols=37 Identities=11% Similarity=0.213 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHc
Q 024892 113 ALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMT 149 (261)
Q Consensus 113 ~~s~~~~nFL~lLien~Rl~~L~~I~~~f~~l~~~~~ 149 (261)
.+++.+..|+.-.++.||.....+++.+-.+++.++.
T Consensus 5 sL~~~~~~~i~~~V~sG~Y~s~SEVir~aLR~le~~e 41 (69)
T TIGR02606 5 SLGEHLESFIRSQVQSGRYGSASEVVRAALRLLEERE 41 (69)
T ss_pred ecCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999888764
No 71
>PF04918 DltD_M: DltD central region; InterPro: IPR007002 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the central region of DltD.; PDB: 3BMA_C.
Probab=26.58 E-value=1.8e+02 Score=24.43 Aligned_cols=64 Identities=20% Similarity=0.227 Sum_probs=40.4
Q ss_pred HHhccHHHHHHhcCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 024892 80 KIFSEKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEV 144 (261)
Q Consensus 80 ~ll~~~~l~~~L~sP~i~~eeK~~lL~~l~~~~~~s~~~~nFL~lLien~Rl~~L~~I~~~f~~l 144 (261)
.-+....+-.||.+|.++.+.|..+.+.+++- .-+..+.++|+-++..+.+.......-.+...
T Consensus 48 ~~fS~~q~~~fl~n~~is~~~k~~~AkRlL~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 111 (163)
T PF04918_consen 48 SYFSPLQAYNFLFNPKISDETKRYAAKRLLEL-PSDVTLKNLLKKIAKGKKLSSFDRWYLRLRYR 111 (163)
T ss_dssp HH--HHHHHHHHHH---SSHHHHHHHHHHHHH--TT-TTHHHHHHHHTT----HHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHCCCCCcHHHHHHHHHHHhh-cccHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 33445678889999999999999999999875 23467788888888888777666665555443
No 72
>TIGR01609 PF_unchar_267 Plasmodium falciparum uncharacterized protein TIGR01609. This model represents a family of at least four proteins in Plasmodium falciparum. An interesting feature is five perfectly conserved Trp residues.
Probab=26.12 E-value=1.3e+02 Score=25.48 Aligned_cols=41 Identities=17% Similarity=0.180 Sum_probs=34.7
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 024892 85 KQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILID 127 (261)
Q Consensus 85 ~~l~~~L~sP~i~~eeK~~lL~~l~~~~~~s~~~~nFL~lLie 127 (261)
..+...|.+|..|..+|..++...+.- ....+.-||.++-+
T Consensus 102 ~~IN~~Lnd~~~sl~dKE~ii~~~l~w--~~~Df~~FL~~Vke 142 (146)
T TIGR01609 102 GHINSDLNDPSLTLVDKEYIVNIWITW--TREDFEFFLEYLKE 142 (146)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 567789999999999999999999974 56888888887754
No 73
>PF14409 Herpeto_peptide: Ribosomally synthesized peptide in Herpetosiphon
Probab=25.50 E-value=60 Score=23.08 Aligned_cols=18 Identities=39% Similarity=0.885 Sum_probs=13.7
Q ss_pred chhhhccccccccCCCCcch
Q 024892 233 LSTWRRMDIRYSYPGLGCST 252 (261)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~ 252 (261)
|+-|--.+. |||+.||..
T Consensus 33 V~~~~~~~G--~~~~tgCdd 50 (58)
T PF14409_consen 33 VGCWKPRDG--SYPVTGCDD 50 (58)
T ss_pred HHhhhhccC--CCCCCCCCc
Confidence 577766665 999999963
No 74
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=24.76 E-value=3e+02 Score=30.32 Aligned_cols=78 Identities=13% Similarity=0.284 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCc-------------eeEEEEeecCCCHHHHHHHHHHHHHHhCCc
Q 024892 115 QPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNT-------------EMAVVSSVVKLESEHLAQIAKQVQKLTGAK 181 (261)
Q Consensus 115 s~~~~nFL~lLien~Rl~~L~~I~~~f~~l~~~~~g~-------------~~~~VtSA~~Lseeq~~~L~~~L~k~~g~k 181 (261)
++.+..|++=|.+-.--..+.+..++..+.++...+. -.+++.|=+-=+.+++++|..-|-. . |
T Consensus 160 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~st~hgcp~~eie~i~~~~~~--~-k 236 (1019)
T PRK09853 160 SPKMQQFIDGMMDASDTPIFAECRETLNKLLDDFAFLAREGLERIPPSICPSVTLSTMHGCPPHEIEAIARYLLE--E-K 236 (1019)
T ss_pred chhHHHHHHHhhhcccChHHHHHHHHHHHHHHHHhhcchhhhhcCChhhcCceeehhccCCCHHHHHHHHHHHHh--c-c
Confidence 4556666666666555555555555555554444333 2367777777789999999987743 2 4
Q ss_pred eeEEEEeECCCCce
Q 024892 182 NVRIKTVIDPSLVA 195 (261)
Q Consensus 182 ~I~l~~~VDpsLIG 195 (261)
.++--.+-||.|+|
T Consensus 237 ~~~~~~k~nptllg 250 (1019)
T PRK09853 237 GLNTFVKLNPTLLG 250 (1019)
T ss_pred CCceEEeeCccccc
Confidence 56777888999998
No 75
>PF15603 Imm45: Immunity protein 45
Probab=24.54 E-value=1.1e+02 Score=23.21 Aligned_cols=26 Identities=8% Similarity=0.236 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCceeEEE
Q 024892 161 KLESEHLAQIAKQVQKLTGAKNVRIK 186 (261)
Q Consensus 161 ~Lseeq~~~L~~~L~k~~g~k~I~l~ 186 (261)
|++++++++|.+.+.+.+..+.+.+.
T Consensus 55 ~it~~e~q~II~aI~~~~~~~~~~v~ 80 (82)
T PF15603_consen 55 PITIAERQKIIEAIEKYFSERGMTVD 80 (82)
T ss_pred ccCHHHHHHHHHHHHHHHhcCceEEE
Confidence 79999999999999999865555544
No 76
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=24.26 E-value=1.5e+02 Score=28.05 Aligned_cols=57 Identities=16% Similarity=0.289 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCceeE
Q 024892 133 VVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGF 197 (261)
Q Consensus 133 ~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~ 197 (261)
.+.+.++.-..+-++--....+.+.|-.|+|++.+.+.. ++.| .-| +..+.+++||+
T Consensus 203 mv~~al~AA~~L~~~GIsa~Vi~m~tIKPiD~~~i~~~A----~~t~-~Iv---T~EeHsi~GGl 259 (312)
T COG3958 203 MVAEALEAAEILKKEGISAAVINMFTIKPIDEQAILKAA----RETG-RIV---TAEEHSIIGGL 259 (312)
T ss_pred chHHHHHHHHHHHhcCCCEEEEecCccCCCCHHHHHHHH----hhcC-cEE---EEecceeecch
Confidence 345666666655554444455666788999987665444 3456 333 34456999996
No 77
>PRK09019 translation initiation factor Sui1; Validated
Probab=23.99 E-value=1.3e+02 Score=24.10 Aligned_cols=29 Identities=17% Similarity=0.329 Sum_probs=26.0
Q ss_pred eeEEEEeecCCCHHHHHHHHHHHHHHhCC
Q 024892 152 EMAVVSSVVKLESEHLAQIAKQVQKLTGA 180 (261)
Q Consensus 152 ~~~~VtSA~~Lseeq~~~L~~~L~k~~g~ 180 (261)
-.++|++-.++++++++.|.+.|+++++.
T Consensus 45 K~VTiI~Gl~~~~~dlk~l~K~lKkk~gc 73 (108)
T PRK09019 45 KGVCLITGLDLDDAELKKLAAELKKKCGC 73 (108)
T ss_pred CeEEEEeCCcCCHHHHHHHHHHHHHHhcC
Confidence 37888889999999999999999999973
No 78
>PF01379 Porphobil_deam: Porphobilinogen deaminase, dipyromethane cofactor binding domain; InterPro: IPR022417 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. Porphobilinogen deaminase (also known as hydroxymethylbilane synthase, 2.5.1.61 from EC) functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the polymerisation of four PBG molecules into the tetrapyrrole structure, preuroporphyrinogen, with the concomitant release of four molecules of ammonia. This enzyme uses a unique dipyrro-methane cofactor made from two molecules of PBG, which is covalently attached to a cysteine side chain. The tetrapyrrole product is synthesized in an ordered, sequential fashion, by initial attachment of the first pyrrole unit (ring A) to the cofactor, followed by subsequent additions of the remaining pyrrole units (rings B, C, D) to the growing pyrrole chain []. The link between the pyrrole ring and the cofactor is broken once all the pyrroles have been added. This enzyme is folded into three distinct domains that enclose a single, large active site that makes use of an aspartic acid as its one essential catalytic residue, acting as a general acid/base during catalysis [, ]. A deficiency of hydroxymethylbilane synthase is implicated in the neuropathic disease, Acute Intermittent Porphyria (AIP) []. This entry represents the N-terminal domains 1 and 2 of porphobilinogen deaminase, an enzyme involved in tetrapyrrole biosynthesis. The structure of this domain consists of a duplication of two similar intertwined domains with three layers of (a/b/a) each. Porphobilinogen deaminase has a three-domain structure. Domains 1 (N-terminal) and 2 are duplications with the same structure, resembling the transferrins and periplasmic binding proteins. The dipyrromethane cofactor is covalently linked to domain 3 (C-terminal), but is bound by extensive salt-bridges and hydrogen-bonds within the cleft between domains 1 and 2, at a position corresponding to the binding sites for small-molecule ligands in the analogous proteins []. The enzyme has a single catalytic site, and the flexibility between domains is thought to aid elongation of the polypyrrole product in the active-site cleft of the enzyme.; GO: 0033014 tetrapyrrole biosynthetic process; PDB: 1GTK_A 1AH5_A 2YPN_A 1PDA_A 1YPN_A 3EQ1_B 3ECR_A.
Probab=23.89 E-value=50 Score=29.57 Aligned_cols=71 Identities=18% Similarity=0.289 Sum_probs=45.7
Q ss_pred ecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCceeEEEEEecCCCEEEeccHHHH------HHHHHHHhccCCcccc
Q 024892 159 VVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQ------LEEIAAQLDLGDVQLA 232 (261)
Q Consensus 159 A~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~~~gd~viD~Svk~~------L~~Lk~~L~~~~~~~~ 232 (261)
..+|.-.|-+.+.+.|++.+. .+.++.+ .|.. .||+..|.++..- -++|.+.|.+|.++++
T Consensus 8 ~S~LAl~Qa~~V~~~L~~~~P--~~~~ei~---------~i~T--~GD~~~~~~L~~~ggkg~Ftkele~aLl~g~iDiA 74 (215)
T PF01379_consen 8 GSKLALAQAEMVIDRLKKAFP--DLEFEIV---------TIKT--TGDRDLDRPLSKIGGKGLFTKELEEALLDGEIDIA 74 (215)
T ss_dssp SSHHHHHHHHHHHHHHHHHST--TSEEEEE---------EE----CCHH--------TT--HCCCHHHHHHHHTTS-SEE
T ss_pred CCHHHHHHHHHHHHHHHHhCC--CceEEEE---------EccC--CCCcccccchhhcCCccHHHHHHHHHHHcCCccEE
Confidence 356777889999999999886 3555543 2334 2888888887755 6889999999999999
Q ss_pred chhhhccccc
Q 024892 233 LSTWRRMDIR 242 (261)
Q Consensus 233 ~~~~~~~~~~ 242 (261)
||-+--+-..
T Consensus 75 VHSlKDlP~~ 84 (215)
T PF01379_consen 75 VHSLKDLPTE 84 (215)
T ss_dssp EEEGGGS-SS
T ss_pred EeccccCCCC
Confidence 9998876543
No 79
>TIGR00212 hemC porphobilinogen deaminase. Biosynthesis of cofactors, prosthetic groups, and carriers: Heme and porphyrin
Probab=23.37 E-value=1.7e+02 Score=27.45 Aligned_cols=70 Identities=19% Similarity=0.262 Sum_probs=51.0
Q ss_pred ecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCceeEEEEEecCCCEEEeccHHH------HHHHHHHHhccCCcccc
Q 024892 159 VVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKK------QLEEIAAQLDLGDVQLA 232 (261)
Q Consensus 159 A~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~~~gd~viD~Svk~------~L~~Lk~~L~~~~~~~~ 232 (261)
..+|.-.|-+.+.+.|++.+. .+.++.+ .|+.. ||+..|.++.. ..+.|...|.+|.++++
T Consensus 7 ~S~LAl~Qa~~V~~~L~~~~p--~~~~ei~---------~i~T~--GD~~~~~~L~~iGgkGlFtkele~aLl~g~iDiA 73 (292)
T TIGR00212 7 GSKLALAQANLVREQLKAVYP--ELDTEIV---------IIKTT--GDKIQDKPLYDIGGKGLFTKELEQALLDGEIDLA 73 (292)
T ss_pred CCHHHHHHHHHHHHHHHHhCC--CceEEEE---------EEeee--CcccccCcHHHcCCceeeHHHHHHHHhcCCCCEE
Confidence 356777888899999988774 2444432 34442 89988877653 24589999999999999
Q ss_pred chhhhcccc
Q 024892 233 LSTWRRMDI 241 (261)
Q Consensus 233 ~~~~~~~~~ 241 (261)
||-+.-+-.
T Consensus 74 VHSlKDlPt 82 (292)
T TIGR00212 74 VHSLKDVPT 82 (292)
T ss_pred EeccccCCC
Confidence 998877654
No 80
>PRK06824 translation initiation factor Sui1; Validated
Probab=22.63 E-value=1.6e+02 Score=24.03 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=28.1
Q ss_pred cCceeEEEEeecCCCHHHHHHHHHHHHHHhCC
Q 024892 149 TNTEMAVVSSVVKLESEHLAQIAKQVQKLTGA 180 (261)
Q Consensus 149 ~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~ 180 (261)
++--.++|++-.++++.+++.|.+.|++++|.
T Consensus 52 r~gK~VTvI~Gl~~~~~dlk~l~K~LKkk~gc 83 (118)
T PRK06824 52 RGGKTVTVITGVPLAEDALKELAKELKRRCGT 83 (118)
T ss_pred CCCceEEEEeCCcCCHHHHHHHHHHHHHHhcC
Confidence 45667888999999999999999999999973
No 81
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=21.64 E-value=4.2e+02 Score=28.42 Aligned_cols=133 Identities=12% Similarity=0.140 Sum_probs=82.4
Q ss_pred HHHHHHHHHHH---hccHHHHHHhcCCCCCHHHHHHHHHHHhhcC--CC--CHHHHHHHHHHHHcCChhh-HHHHHHHHH
Q 024892 71 TSADVEKIEKI---FSEKQIHEFFVNPTIDIEKKREMVDEICKSS--AL--QPLTGNFLNILIDAKRVDV-VKDIVKEFE 142 (261)
Q Consensus 71 v~~eL~~l~~l---l~~~~l~~~L~sP~i~~eeK~~lL~~l~~~~--~~--s~~~~nFL~lLien~Rl~~-L~~I~~~f~ 142 (261)
|..++..+..+ ..|++|.+-+.. +..+.|.+++.-+-+.. .+ +..+--|++-+.+-+|-.+ +-.++..|.
T Consensus 477 W~~d~~~l~~l~~~~~D~~f~~~l~~--vK~~nK~~L~~~i~~~~g~~ldp~slfdvq~KR~heYKRq~LNil~ii~~y~ 554 (794)
T TIGR02093 477 WLTDLDLLKKLEPYADDSEFLEEFRQ--VKQANKQRLAAYIKEHTGVEVDPNSIFDVQVKRLHEYKRQLLNVLHVIYLYN 554 (794)
T ss_pred hhhcHHHHHHHHhcCCcHHHHHHHHH--HHHHHHHHHHHHHHHhcCCccCccccchhhheechhhhHHHHHHhhhHHHHH
Confidence 55555555444 357887776653 56777888777665432 23 3567788999999999999 999999999
Q ss_pred HHHHHHcC-ceeEEE-Eee--cCCCHHHHHHHHHHH---HHHhCCceeEEEEeECCCCceeEEEEEecCCCEEEeccHHH
Q 024892 143 EVYNKMTN-TEMAVV-SSV--VKLESEHLAQIAKQV---QKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKK 215 (261)
Q Consensus 143 ~l~~~~~g-~~~~~V-tSA--~~Lseeq~~~L~~~L---~k~~g~k~I~l~~~VDpsLIGG~iI~i~~~gd~viD~Svk~ 215 (261)
++.+.-.. ....++ ..+ .|-. ..-++|.+.+ .+..+ -||.+-|-++|-+ =.-||.|+..
T Consensus 555 ~i~~~p~~~~~P~~~IFaGKAaP~y-~~aK~iIklI~~va~~iN---------~Dp~v~~~lkVVF----lenY~VslAe 620 (794)
T TIGR02093 555 RIKEDPPKDIVPRTVIFGGKAAPGY-HMAKLIIKLINSVAEVVN---------NDPAVGDKLKVVF----VPNYNVSLAE 620 (794)
T ss_pred HHHhCCCcCCCCeEEEEEecCCCCc-HHHHHHHHHHHHHHHHhc---------cChhhCCceeEEE----eCCCChHHHH
Confidence 99765222 234444 443 4433 3333343333 33333 2788866666665 1338888887
Q ss_pred HHHH
Q 024892 216 QLEE 219 (261)
Q Consensus 216 ~L~~ 219 (261)
.|-.
T Consensus 621 ~iip 624 (794)
T TIGR02093 621 LIIP 624 (794)
T ss_pred Hhhh
Confidence 7643
No 82
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=21.57 E-value=5.4e+02 Score=25.99 Aligned_cols=77 Identities=9% Similarity=0.122 Sum_probs=38.8
Q ss_pred cHHHHHHhcCCC---CCHHHHHHHHHHHhhcC--CCC-HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCceeEEEE
Q 024892 84 EKQIHEFFVNPT---IDIEKKREMVDEICKSS--ALQ-PLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVS 157 (261)
Q Consensus 84 ~~~l~~~L~sP~---i~~eeK~~lL~~l~~~~--~~s-~~~~nFL~lLien~Rl~~L~~I~~~f~~l~~~~~g~~~~~Vt 157 (261)
-+.+.+||.-|. .+.++-...+..+..+. .++ ..+..|...+.+ + +-..+.++... +.
T Consensus 413 ~~~i~~fL~Q~~~~~~~~~~~~~~l~~~~~g~~d~~~~~~v~~~~~~~~~-----~---~~~~~~~~~~~--------~~ 476 (497)
T TIGR03324 413 GRRIRACLKQTQSSPLTVPQQIAILLALTNGLFDGVDLDAMPEAESAIRA-----A---VTSLPADLRER--------LQ 476 (497)
T ss_pred HHHHHHHhCCCCCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH-----H---HHhhhHHHHHH--------HH
Confidence 367777886553 45667777776665542 111 233344333321 1 11111122211 11
Q ss_pred eecCCCHHHHHHHHHHHHH
Q 024892 158 SVVKLESEHLAQIAKQVQK 176 (261)
Q Consensus 158 SA~~Lseeq~~~L~~~L~k 176 (261)
....|+++..+.|.+.+++
T Consensus 477 ~~~~~~~~~~~~~~~~~~~ 495 (497)
T TIGR03324 477 SGKKLSDEDREQILDIARG 495 (497)
T ss_pred hcCCCCHHHHHHHHHHHHh
Confidence 2356888888888887765
No 83
>COG0181 HemC Porphobilinogen deaminase [Coenzyme metabolism]
Probab=20.32 E-value=1.9e+02 Score=27.36 Aligned_cols=80 Identities=19% Similarity=0.350 Sum_probs=57.5
Q ss_pred cCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCceeEEEEEecCCCEEEeccHHHH------HHHHHHHhccCCccccc
Q 024892 160 VKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQ------LEEIAAQLDLGDVQLAL 233 (261)
Q Consensus 160 ~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~~~gd~viD~Svk~~------L~~Lk~~L~~~~~~~~~ 233 (261)
.+|.=.|-+.+.+.|++.++ .+.++.+ .++.. ||.+.|-.+..- .+.+...|.+|.++++|
T Consensus 11 S~LAl~Qa~~V~~~L~~~~p--~~~~ei~---------~i~T~--GD~i~d~pL~~iGgkGlFtkEle~all~g~~DiAV 77 (307)
T COG0181 11 SKLALAQANEVIERLKAAYP--DLEVEIV---------TIKTK--GDRILDKPLSKIGGKGLFTKELEQALLEGEIDIAV 77 (307)
T ss_pred CHHHHHHHHHHHHHHHHhCC--CceEEEE---------EEecc--cchhccchHHHcCCcEEEHHHHHHHHHcCCCCEEE
Confidence 45667788999999998887 3444443 23442 899999998332 47899999999999999
Q ss_pred hhhhccccccccCCCCcchh
Q 024892 234 STWRRMDIRYSYPGLGCSTI 253 (261)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~ 253 (261)
|-.--+---+ =+||.++.|
T Consensus 78 HSlKDvP~~~-p~gL~laai 96 (307)
T COG0181 78 HSLKDVPTEL-PEGLVLAAI 96 (307)
T ss_pred eecccCCccC-CCCceEEEe
Confidence 9887665543 356665443
No 84
>TIGR02670 cas_csx8 CRISPR-associated protein Csx8 (provisional). In three genomes so far, a member of this protein appears in the midst of a CRISPR-associated (cas) gene operon, immediately upstream of a member of family TIGR01875 (CRISPR-associated autoregulator, DevR family). The genomes so far are Nocardia farcinica IFM10152, Clostridium perfringens SM101, and Clostridium tetani E88.
Probab=20.07 E-value=3.5e+02 Score=26.85 Aligned_cols=75 Identities=15% Similarity=0.317 Sum_probs=52.8
Q ss_pred HHHHHHHhc----cHHHHHHhcCCCCCHHHHH---------HHHHHHhhcCCCCHHHHHHHHHHHHcCChhhHHHHHHHH
Q 024892 75 VEKIEKIFS----EKQIHEFFVNPTIDIEKKR---------EMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEF 141 (261)
Q Consensus 75 L~~l~~ll~----~~~l~~~L~sP~i~~eeK~---------~lL~~l~~~~~~s~~~~nFL~lLien~Rl~~L~~I~~~f 141 (261)
|..++..+. ...+..+|..+.++.++.. .+++++|++.+++..=..=+--|++.+|..++.+.+..=
T Consensus 58 l~fve~~~~d~~~h~~~e~~l~~~e~s~e~i~~i~~~~~~nti~kkvf~k~kfdg~n~~eil~~i~~nr~~~i~etfr~k 137 (441)
T TIGR02670 58 LDFVEKFYSDTLHHKKVENILKHKEFTEEIIKSINEKLSANTVMKKVFGKIKFDGTNKDEILDLIDKNRHSLIKETFRRK 137 (441)
T ss_pred HHHHHHHccchhhHHHHHHHhcccccCHHHHHHHHHhhhhhHHHHHHHhccCCCCCCHHHHHHHHHhhHHHHHHHHHhhh
Confidence 444554443 4778889999999888765 467788877666655555555678889999999988776
Q ss_pred HHHHHHHc
Q 024892 142 EEVYNKMT 149 (261)
Q Consensus 142 ~~l~~~~~ 149 (261)
..+++...
T Consensus 138 k~~y~n~~ 145 (441)
T TIGR02670 138 KDLYDNYC 145 (441)
T ss_pred hhHHHhcc
Confidence 66665543
Done!