Query 024892
Match_columns 261
No_of_seqs 169 out of 1149
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 16:15:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024892.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024892hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wss_S ATP synthase subunit O, 100.0 3.3E-42 1.1E-46 297.2 -11.8 175 48-225 12-187 (190)
2 1abv_A Delta subunit of the F1 100.0 2.9E-28 9.9E-33 197.9 14.4 130 48-179 4-133 (134)
3 2dm9_A V-type ATP synthase sub 97.1 0.0021 7.1E-08 53.5 8.7 85 130-225 102-189 (198)
4 3v6i_A V-type ATP synthase sub 96.6 0.028 9.7E-07 47.1 11.9 53 166-225 126-178 (187)
5 4efa_E V-type proton ATPase su 96.0 0.08 2.7E-06 45.9 12.0 88 135-225 118-215 (233)
6 3lg8_A A-type ATP synthase sub 92.8 0.013 4.4E-07 45.4 -1.0 57 167-225 42-98 (106)
7 3tuf_A Stage III sporulation p 70.4 3.2 0.00011 35.5 3.4 91 85-187 101-193 (197)
8 1yk0_E Atrial natriuretic fact 66.2 1.8 6.3E-05 25.1 0.7 13 244-256 12-24 (26)
9 2hc5_A ORF 99, hypothetical pr 51.7 24 0.00083 27.4 5.2 44 159-203 32-75 (117)
10 1yk1_E Natriuretic peptides B; 51.3 4.7 0.00016 23.4 0.7 12 244-255 12-23 (26)
11 1q01_A Lebetin 2 isoform alpha 46.4 5.5 0.00019 25.1 0.5 16 241-256 20-36 (38)
12 3n56_C Natriuretic peptides B; 45.1 6.1 0.00021 24.0 0.6 11 244-254 20-30 (32)
13 1fex_A TRF2-interacting telome 42.2 3.2 0.00011 28.4 -1.1 14 231-244 41-54 (59)
14 1u83_A Phosphosulfolactate syn 38.6 14 0.00047 33.1 2.1 160 26-229 24-187 (276)
15 3n57_C Atrial natriuretic fact 37.9 9.5 0.00033 22.4 0.6 11 244-254 17-27 (28)
16 3arc_J Photosystem II reaction 31.9 13 0.00043 23.7 0.5 8 244-251 32-39 (40)
17 1jdp_H CNP, C-type natriuretic 31.1 14 0.00047 21.4 0.6 9 244-252 16-24 (26)
18 2npb_A Selenoprotein W; struct 30.8 56 0.0019 24.3 4.1 43 166-211 18-60 (96)
19 2aya_A DNA polymerase III subu 29.3 67 0.0023 24.8 4.5 41 150-191 53-95 (128)
20 2xzm_F EIF1; ribosome, transla 29.1 62 0.0021 24.3 4.1 51 149-207 27-77 (101)
21 1r4g_A RNA polymerase alpha su 27.0 1.4E+02 0.0048 19.8 5.3 41 86-127 6-46 (53)
22 3ff5_A PEX14P, peroxisomal bio 24.5 52 0.0018 22.2 2.6 20 88-107 17-39 (54)
23 1l6x_B Minimized B-domain of p 24.2 86 0.0029 19.1 3.3 26 85-110 7-32 (34)
24 3gx8_A Monothiol glutaredoxin- 23.8 1.1E+02 0.0038 22.9 4.8 76 114-197 1-88 (121)
25 3abf_A 4-oxalocrotonate tautom 23.8 1.2E+02 0.004 19.5 4.4 25 153-177 3-27 (64)
26 1wh9_A 40S ribosomal protein S 23.2 1.2E+02 0.0041 22.2 4.7 44 150-193 35-87 (92)
27 1ic9_A TH10AOX; three stranded 23.1 17 0.0006 20.9 -0.0 16 242-257 9-24 (29)
28 2ogh_A Eukaryotic translation 23.0 1E+02 0.0034 23.4 4.3 51 149-207 34-84 (108)
29 3rfi_A Asp; PSI, saposin, hydr 20.3 94 0.0032 23.2 3.7 37 39-75 1-39 (108)
30 3m20_A 4-oxalocrotonate tautom 20.2 1.3E+02 0.0044 19.6 4.0 23 154-177 3-25 (62)
No 1
>2wss_S ATP synthase subunit O, mitochondrial; hydrogen ION transport, ATP synthesis, phosphoprotein, UBL conjugation, transit peptide; HET: ANP ADP; 3.20A {Bos taurus} PDB: 2bo5_A 2jmx_A
Probab=100.00 E-value=3.3e-42 Score=297.24 Aligned_cols=175 Identities=21% Similarity=0.423 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccHHHHHHhcCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 024892 48 ATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILID 127 (261)
Q Consensus 48 ~~iA~~YAkALfe~A~e~~~le~v~~eL~~l~~ll~~~~l~~~L~sP~i~~eeK~~lL~~l~~~~~~s~~~~nFL~lLie 127 (261)
.++|++||+|||++|.+++.++.|.++|..+..++++|+|+.+|.||.++.++|.+++.++|++.++++.+.|||++|++
T Consensus 12 ~~ia~rYA~AL~~~A~e~~~l~~v~~~L~~l~~~~~~~~l~~~l~~P~i~~~~K~~~l~~~~~~~~~~~~~~nfl~ll~~ 91 (190)
T 2wss_S 12 YGIEGRYATALYSAASKQNKLEQVEKELLRVGQILKEPKMAASLLNPYVKRSVKVKSLSDMTAKEKFSPLTSNLINLLAE 91 (190)
T ss_dssp CSSSCTTHHHHHHHTTTTTCHHHHHHHHHHHHHHSSSTTSHHHHTCTTTTTSTTTTTTTHHHHTTTCCSSSSHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHCCHHHHHHHhCCCCCHHHHHHHHHHHHcccCCCHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999899999999999999999999999999864589999999999999
Q ss_pred cCChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHHhCC-ceeEEEEeECCCCceeEEEEEecCCC
Q 024892 128 AKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTGA-KNVRIKTVIDPSLVAGFTIRYGKWGS 206 (261)
Q Consensus 128 n~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~-k~I~l~~~VDpsLIGG~iI~i~~~gd 206 (261)
|+|+.++++|+++|.+++++++|+..++|+||+|||++|+++|++.|++++|. +++.++++|||+||||++|++ ||
T Consensus 92 ~~R~~~l~~I~~~f~~l~~~~~~~~~a~V~sA~~Ls~~q~~~l~~~L~~~~g~~~~v~l~~~vDpsLiGG~~v~v---gd 168 (190)
T 2wss_S 92 NGRLTNTPAVISAFSTMMSVHRGEVPCTVTTASALDETTLTELKTVLKSFLSKGQVLKLEVKIDPSIMGGMIVRI---GE 168 (190)
T ss_dssp TTCGGGHHHHHHHHHHHHTTTSCCCCBCSSSCBCCCCSSSTTTTTTTTSSTTTCC-------------------------
T ss_pred CCcHhhHHHHHHHHHHHHHHHcCeeEEEEEECCCCCHHHHHHHHHHHHHHHCCCCeEEEEEEEChhHhCeEEEEE---CC
Confidence 99999999999999999999999999999999999999999999999999973 689999999999999999999 79
Q ss_pred EEEeccHHHHHHHHHHHhc
Q 024892 207 KLIDMSVKKQLEEIAAQLD 225 (261)
Q Consensus 207 ~viD~Svk~~L~~Lk~~L~ 225 (261)
++||+|++++|++|++.|.
T Consensus 169 ~viD~Sv~~~L~~l~~~L~ 187 (190)
T 2wss_S 169 KYVDMSAKTKIQKLSRAMR 187 (190)
T ss_dssp CCTTTTTTTTTTTTCTTTT
T ss_pred EEEehhHHHHHHHHHHHHh
Confidence 9999999999999998875
No 2
>1abv_A Delta subunit of the F1F0-ATP synthase; ATP synthesis, F1-ATPase, spectroscopy; NMR {Escherichia coli} SCOP: a.70.1.1 PDB: 2a7u_B
Probab=99.96 E-value=2.9e-28 Score=197.93 Aligned_cols=130 Identities=21% Similarity=0.293 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccHHHHHHhcCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 024892 48 ATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILID 127 (261)
Q Consensus 48 ~~iA~~YAkALfe~A~e~~~le~v~~eL~~l~~ll~~~~l~~~L~sP~i~~eeK~~lL~~l~~~~~~s~~~~nFL~lLie 127 (261)
.+||+|||+|||++|.+++.++.|.+.+..+..+.++|+|+.+|. |.++.++|.+++.++|++ ++++.+.|||++|++
T Consensus 4 ~~ia~rYA~AL~~~A~e~~~l~~~~e~~~~~~~~~~~~~l~~~l~-P~i~~~~K~~~l~~~~~~-~~~~~~~nfl~ll~~ 81 (134)
T 1abv_A 4 ITVARPYAKAAFDFAVEHQSVERWQDMLAFAAEVTKNEQMAELLS-GALAPETLAESFIAVCGE-QLDENGQNLIRVMAE 81 (134)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSHHHHHHHT-CSSCHHHHHHHHHHHHCS-CCCHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCHHHHHHHC-ccCCHHHHHHHHHHHHhc-cCCHHHHHHHHHHHH
Confidence 579999999999999999999999744444444545899999999 999999999999999986 799999999999999
Q ss_pred cCChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHHHHHHHhC
Q 024892 128 AKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAKQVQKLTG 179 (261)
Q Consensus 128 n~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g 179 (261)
|+|+.++++|++.|.+++++++|++.|+|+||.|||++|+++|.+.|++++|
T Consensus 82 ~~Rl~~l~~I~~~f~~l~~~~~~~~~a~V~SA~~Ls~~q~~~l~~~L~~~~g 133 (134)
T 1abv_A 82 NGRLNALPDVLEQFIHLRAVSEATAEVDVISAAALSEQQLAKISAAMEKRLS 133 (134)
T ss_dssp TTCGGGHHHHHHHHHHHHHHHHHC----------------------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHCCeeEEEEEecCCCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999988
No 3
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=97.08 E-value=0.0021 Score=53.55 Aligned_cols=85 Identities=20% Similarity=0.272 Sum_probs=53.1
Q ss_pred ChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCCHHHHHHHHH---HHHHHhCCceeEEEEeECCCCceeEEEEEecCCC
Q 024892 130 RVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLESEHLAQIAK---QVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGS 206 (261)
Q Consensus 130 Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Lseeq~~~L~~---~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~~~gd 206 (261)
...++..++.+....+ +.-.++|+ ++++....+.+ .+.+.++ .+.++..-++...||++|..++ |+
T Consensus 102 y~~~l~~li~e~~~~~----~~~~v~i~----v~~~D~~~v~~~~~~~~~~~~--~~~l~i~~~~~~~GG~~i~~~~-G~ 170 (198)
T 2dm9_A 102 YFESVKALLKEAIKEL----NEKKVRVM----SNEKTLGLIASRIEEIKSELG--DVSIELGETVDTMGGVIVETED-GR 170 (198)
T ss_dssp HHHHHHHHHHHHHHHH----TCSEEEEE----CCHHHHHHHHHTHHHHHHHCT--TCEEEECCCCCCSSEEEEEETT-SS
T ss_pred HHHHHHHHHHHHHHHc----CCCCEEEE----ECHhHHHHHHHHHHHHHHHhc--CceEEECCCCCccCceEEEeCC-CC
Confidence 3445555555444433 33345554 34444444444 4445553 2344432255788999999965 77
Q ss_pred EEEeccHHHHHHHHHHHhc
Q 024892 207 KLIDMSVKKQLEEIAAQLD 225 (261)
Q Consensus 207 ~viD~Svk~~L~~Lk~~L~ 225 (261)
..+|+|+.++|+.+...+.
T Consensus 171 i~id~tl~~rl~~~~~~l~ 189 (198)
T 2dm9_A 171 IRIDNTFEARMERFEGEIR 189 (198)
T ss_dssp CEEEEEHHHHHHHTHHHHH
T ss_pred EEEECcHHHHHHHHHHHhH
Confidence 8999999999999999886
No 4
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=96.57 E-value=0.028 Score=47.13 Aligned_cols=53 Identities=19% Similarity=0.310 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhCCceeEEEEeECCCCceeEEEEEecCCCEEEeccHHHHHHHHHHHhc
Q 024892 166 HLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLD 225 (261)
Q Consensus 166 q~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~~~gd~viD~Svk~~L~~Lk~~L~ 225 (261)
....+...+.. +| + ++..++++.|||+|...| |..++|+|+.++|+.+...+.
T Consensus 126 D~~~v~~~~~~-~~---~--~~~~~~~~~GGvil~~~d-G~I~vdnTle~rL~~~~~~~~ 178 (187)
T 3v6i_A 126 DLPHLEALARE-RG---V--ELQAEPALRLGVRAVGAE-GKTQVENSLLARLDRAWDALS 178 (187)
T ss_dssp THHHHHHHHHH-HT---C--EEEECTTCCSEEEEECTT-SSCEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-cC---e--eeCCCCcccCceEEEeCC-CCEEEECCHHHHHHHHHHHhH
Confidence 34444444443 35 2 334688999999999864 778999999999999998876
No 5
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=96.00 E-value=0.08 Score=45.90 Aligned_cols=88 Identities=11% Similarity=0.109 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHcCceeEEEEeecCCCHH----HHHHHHHHHHHHhCCceeEEEEeEC------CCCceeEEEEEecC
Q 024892 135 KDIVKEFEEVYNKMTNTEMAVVSSVVKLESE----HLAQIAKQVQKLTGAKNVRIKTVID------PSLVAGFTIRYGKW 204 (261)
Q Consensus 135 ~~I~~~f~~l~~~~~g~~~~~VtSA~~Lsee----q~~~L~~~L~k~~g~k~I~l~~~VD------psLIGG~iI~i~~~ 204 (261)
..++..+........+.-.+.|.+ .+=+.+ .+..+.+.+..+.+ +.......++ ++.+||++|..+|
T Consensus 118 ~~lL~~Li~eal~~l~e~~v~V~~-~~~D~~lv~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~GGvil~s~d- 194 (233)
T 4efa_E 118 KPILQSLIVEALLKLLEPKAIVKA-LERDVDLIESMKDDIMREYGEKAQ-RAPLEEIVISNDYLNKDLVSGGVVVSNAS- 194 (233)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEEE-CTTTHHHHTTSHHHHHHHHHHHTT-TSCCCEEEECSSCCCTTTCSSEEEEECTT-
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEe-cHhhHHHHHHHHHHHHHHHHHHhC-CCCccccccccccCCcccccCceEEEECC-
Confidence 344444333333333444555554 333333 33455555666666 4444444443 3478999999875
Q ss_pred CCEEEeccHHHHHHHHHHHhc
Q 024892 205 GSKLIDMSVKKQLEEIAAQLD 225 (261)
Q Consensus 205 gd~viD~Svk~~L~~Lk~~L~ 225 (261)
|..++|.|+-++|+.+...+.
T Consensus 195 GkI~vdNTle~RL~~~~~~~l 215 (233)
T 4efa_E 195 DKIEINNTLEERLKLLSEEAL 215 (233)
T ss_dssp SCCEEEEEHHHHHHHHHHHHH
T ss_pred CCEEEECCHHHHHHHHHHHHH
Confidence 779999999999999988775
No 6
>3lg8_A A-type ATP synthase subunit E; archaea, peripheral stalk, hydrolase, structural protein, TR protein; 4.10A {Methanocaldococcus jannaschii}
Probab=92.83 E-value=0.013 Score=45.39 Aligned_cols=57 Identities=21% Similarity=0.223 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhCCceeEEEEeECCCCceeEEEEEecCCCEEEeccHHHHHHHHHHHhc
Q 024892 167 LAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLD 225 (261)
Q Consensus 167 ~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~~~gd~viD~Svk~~L~~Lk~~L~ 225 (261)
+..+.+.++++.| +++.++..-..+.+||+++...| |...+|.|+.++|+.++.++.
T Consensus 42 l~~~~~e~~~~~g-~~~~v~~~~~~~~~GGvil~s~d-g~I~vdNTle~rL~~l~~~~~ 98 (106)
T 3lg8_A 42 LWNLEKEVENATK-KVTVLKKGEPVDIAGGCIIETAD-GLKSLDNSLEAIFNRNLNVIR 98 (106)
T ss_dssp CTTTTTTHHHHSS-SCCCCCCCCCCSSSCBCBCSSCS-CBCCCCSHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CeEEEEeCCCccccccEEEEeCC-CCEEEECCHHHHHHHHHHHHH
Confidence 3444555677788 56655442235789999999875 888899999999999999886
No 7
>3tuf_A Stage III sporulation protein AH; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_A
Probab=70.39 E-value=3.2 Score=35.48 Aligned_cols=91 Identities=19% Similarity=0.135 Sum_probs=59.2
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH-cCChhhHHHHHHHHHHHHHHHcCceeEEEEeecCCC
Q 024892 85 KQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILID-AKRVDVVKDIVKEFEEVYNKMTNTEMAVVSSVVKLE 163 (261)
Q Consensus 85 ~~l~~~L~sP~i~~eeK~~lL~~l~~~~~~s~~~~nFL~lLie-n~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtSA~~Ls 163 (261)
..|..++.|+.++.++|.+..+.+.+-. -...--..|+-|+. +|--+.+ +....+.+.+.|- +..|+
T Consensus 101 E~L~eII~n~n~S~eeK~eA~~ql~eLt-~~~ekE~~IE~LLKAKGF~DAV----------V~i~dd~V~VVVk-a~~Ls 168 (197)
T 3tuf_A 101 EELNAIVSSDDATAKEKSEAYDKMTALS-EVEGTEKQLETLIKTQGYEDAL----------VNAEGDKINITVK-SDKHS 168 (197)
T ss_dssp HHHHHHHTCTTSCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTTCSCEE----------EECSSSEEEEEEE-CSCCC
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCceE----------EEecCCEEEEEEe-CCCCC
Confidence 6789999999999999999999887531 01222333333333 2222211 1112344556555 57899
Q ss_pred HHHHHHHHHHHHHHhCC-ceeEEEE
Q 024892 164 SEHLAQIAKQVQKLTGA-KNVRIKT 187 (261)
Q Consensus 164 eeq~~~L~~~L~k~~g~-k~I~l~~ 187 (261)
+.+..+|.+.+.+.+|. .+|.+.|
T Consensus 169 ~~eaaqI~DIV~r~tgv~~dV~Vqf 193 (197)
T 3tuf_A 169 KSKATAIIDLVAKEIKTMKDVAVTF 193 (197)
T ss_dssp HHHHHHHHHTSCHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHHHhhCCCCceEEEe
Confidence 99999999999999984 5555555
No 8
>1yk0_E Atrial natriuretic factor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, hormone-growth factor receptor complex; HET: NAG; 2.40A {Homo sapiens} PDB: 1t34_H*
Probab=66.17 E-value=1.8 Score=25.09 Aligned_cols=13 Identities=31% Similarity=0.807 Sum_probs=9.0
Q ss_pred ccCCCCcchhhhh
Q 024892 244 SYPGLGCSTIRDA 256 (261)
Q Consensus 244 ~~~~~~~~~~~~~ 256 (261)
|.||+||...|+.
T Consensus 12 s~SglGC~~~r~p 24 (26)
T 1yk0_E 12 AQSGLGCNSFXXX 24 (26)
T ss_dssp SSCCSCCCCC---
T ss_pred cccCCCCCCcccc
Confidence 6899999988875
No 9
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=51.69 E-value=24 Score=27.38 Aligned_cols=44 Identities=18% Similarity=0.304 Sum_probs=35.5
Q ss_pred ecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCceeEEEEEec
Q 024892 159 VVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGK 203 (261)
Q Consensus 159 A~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~~ 203 (261)
..+++++++++..+.|.+.+......+.+.+|++. |-++|+|=|
T Consensus 32 ~~~~~~eel~~av~~lN~~~~~~n~~L~F~vdee~-~~~vVkVvD 75 (117)
T 2hc5_A 32 VHQVSYTNLAEMVGEMNKLLEPSQVHLKFELHDKL-NEYYVKVIE 75 (117)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTTSSCCEEEEEEEET-TEEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCceEEEEecCC-CcEEEEEEE
Confidence 45789999999999999887655678888888885 888888843
No 10
>1yk1_E Natriuretic peptides B; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, hormone-growth factor receptor complex; HET: NAG; 2.90A {Homo sapiens}
Probab=51.32 E-value=4.7 Score=23.36 Aligned_cols=12 Identities=42% Similarity=0.902 Sum_probs=8.6
Q ss_pred ccCCCCcchhhh
Q 024892 244 SYPGLGCSTIRD 255 (261)
Q Consensus 244 ~~~~~~~~~~~~ 255 (261)
|.||+||...+.
T Consensus 12 s~SglGC~~~r~ 23 (26)
T 1yk1_E 12 SSSGLGCKVLXX 23 (26)
T ss_dssp SSCCSCCCCC--
T ss_pred ccccCCCCCccc
Confidence 689999987653
No 11
>1q01_A Lebetin 2 isoform alpha; beta-bulged hairpain, blood clotting; NMR {Macrovipera lebetina}
Probab=46.42 E-value=5.5 Score=25.14 Aligned_cols=16 Identities=44% Similarity=0.781 Sum_probs=11.5
Q ss_pred ccc-ccCCCCcchhhhh
Q 024892 241 IRY-SYPGLGCSTIRDA 256 (261)
Q Consensus 241 ~~~-~~~~~~~~~~~~~ 256 (261)
||- |.|||||.+.+.-
T Consensus 20 DRIGs~SglGCn~~~~~ 36 (38)
T 1q01_A 20 DRIGSHSGLGCNKVDDN 36 (38)
T ss_dssp SCCCSSCCCCCSCCSSC
T ss_pred ccccccccCCCCCCCCC
Confidence 444 6899999876643
No 12
>3n56_C Natriuretic peptides B; insulysin, insulinase, A-beta degrading enzyme, cryptidase, hydrolase, hormone, disease mutation, diabetes mellitus; 3.10A {Homo sapiens}
Probab=45.11 E-value=6.1 Score=23.99 Aligned_cols=11 Identities=55% Similarity=1.120 Sum_probs=9.0
Q ss_pred ccCCCCcchhh
Q 024892 244 SYPGLGCSTIR 254 (261)
Q Consensus 244 ~~~~~~~~~~~ 254 (261)
|.|||||...|
T Consensus 20 s~SglGCn~~r 30 (32)
T 3n56_C 20 SSSGLGCKVLR 30 (32)
T ss_pred ccccCcccccc
Confidence 67999998764
No 13
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=42.18 E-value=3.2 Score=28.44 Aligned_cols=14 Identities=29% Similarity=0.707 Sum_probs=12.2
Q ss_pred ccchhhhccccccc
Q 024892 231 LALSTWRRMDIRYS 244 (261)
Q Consensus 231 ~~~~~~~~~~~~~~ 244 (261)
+..|+||++||||-
T Consensus 41 ~~~HtwqSwRdRy~ 54 (59)
T 1fex_A 41 LTQHSWQSLKDRYL 54 (59)
T ss_dssp SSSCCSHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 56899999999984
No 14
>1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1
Probab=38.60 E-value=14 Score=33.10 Aligned_cols=160 Identities=13% Similarity=0.155 Sum_probs=92.9
Q ss_pred CCcccCCCCCCCCCCchhhhhh--HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccHHHHHHhcCCCCCHHHHHH
Q 024892 26 NPLSATIPSGPRRRGAHGIRMS--ATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKRE 103 (261)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~M~--~~iA~~YAkALfe~A~e~~~le~v~~eL~~l~~ll~~~~l~~~L~sP~i~~eeK~~ 103 (261)
||++-..|.+|...-..|.||. ....-+|.+.+++.|.+-=+ +++ =.+-.+...|. .++|.+
T Consensus 24 ~~~~f~~~~R~~KPR~~GlT~v~Dkglg~~~~~DlLe~ag~yID-------------~lK-fg~GTs~l~~~--l~ekI~ 87 (276)
T 1u83_A 24 NDFSLELPVRTNKPRETGQSILIDNGYPLQFFKDAIAGASDYID-------------FVK-FGWGTSLLTKD--LEEKIS 87 (276)
T ss_dssp -CCCCCCCCCCCSSCSSSCEEEEESSCCHHHHHHHHHHHGGGCC-------------EEE-ECTTGGGGCTT--HHHHHH
T ss_pred ccccCCCCCcCCCCcccCceEEecCCCCHHHHHHHHHHhhhhcc-------------eEE-ecCcchhhhHH--HHHHHH
Confidence 4555444555544455678887 56777777777776654211 111 11222333344 778887
Q ss_pred HHHHHhhcCCCCHHHHH-HHHHHHHcCChhhHHHHHHHHHHHHHHHcCceeEEEEe-ecCCCHHHHHHHHHHHHHHhCCc
Q 024892 104 MVDEICKSSALQPLTGN-FLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAVVSS-VVKLESEHLAQIAKQVQKLTGAK 181 (261)
Q Consensus 104 lL~~l~~~~~~s~~~~n-FL~lLien~Rl~~L~~I~~~f~~l~~~~~g~~~~~VtS-A~~Lseeq~~~L~~~L~k~~g~k 181 (261)
+..+- ++...+-. |+++.+-++. +++|.+... ..|.-.++|.. ...|+.+++.++.+..+..+
T Consensus 88 l~~~~----gV~v~~GGTlfE~~l~qg~-------~~~yl~~~k-~lGF~~IEISdGti~l~~~~~~~lI~~a~~~f--- 152 (276)
T 1u83_A 88 TLKEH----DITFFFGGTLFEKYVSQKK-------VNEFHRYCT-YFGCEYIEISNGTLPMTNKEKAAYIADFSDEF--- 152 (276)
T ss_dssp HHHHT----TCEEEECHHHHHHHHHTTC-------HHHHHHHHH-HTTCSEEEECCSSSCCCHHHHHHHHHHHTTTS---
T ss_pred HHHHc----CCeEeCCcHHHHHHHHcCc-------HHHHHHHHH-HcCCCEEEECCCcccCCHHHHHHHHHHHHhhc---
Confidence 77663 46666666 8888888873 455665554 34888888886 45899999998888665443
Q ss_pred eeEEEEeECCCCceeEEEEEecCCCEEEeccHHHHHHHHHHHhccCCc
Q 024892 182 NVRIKTVIDPSLVAGFTIRYGKWGSKLIDMSVKKQLEEIAAQLDLGDV 229 (261)
Q Consensus 182 ~I~l~~~VDpsLIGG~iI~i~~~gd~viD~Svk~~L~~Lk~~L~~~~~ 229 (261)
.+...|-..- -.. +. -.++...++++++.|.+|.-
T Consensus 153 --~Vl~EvG~K~-----~~~----~~--~~~~~~~I~~~~~dLeAGA~ 187 (276)
T 1u83_A 153 --LVLSEVGSKD-----AEL----AS--RQSSEEWLEYIVEDMEAGAE 187 (276)
T ss_dssp --EEEEECSCCC-----------------CCSTHHHHHHHHHHHHTEE
T ss_pred --EEeeeccccC-----ccc----cC--CCCHHHHHHHHHHHHHCCCc
Confidence 3333331100 011 11 23455668888888877764
No 15
>3n57_C Atrial natriuretic factor; insulysin, insulinase, A-beta degrading enzyme, cryptidase, hydrolase, hormone, disease mutation, diabetes mellitus; 3.03A {Homo sapiens} PDB: 1anp_A
Probab=37.90 E-value=9.5 Score=22.42 Aligned_cols=11 Identities=45% Similarity=1.108 Sum_probs=8.4
Q ss_pred ccCCCCcchhh
Q 024892 244 SYPGLGCSTIR 254 (261)
Q Consensus 244 ~~~~~~~~~~~ 254 (261)
|.||+||...|
T Consensus 17 s~SglGC~~~r 27 (28)
T 3n57_C 17 AQSGLGCNSFR 27 (28)
T ss_pred ccccCCcCccc
Confidence 67999997643
No 16
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=31.90 E-value=13 Score=23.69 Aligned_cols=8 Identities=63% Similarity=1.194 Sum_probs=5.6
Q ss_pred ccCCCCcc
Q 024892 244 SYPGLGCS 251 (261)
Q Consensus 244 ~~~~~~~~ 251 (261)
||+|||.|
T Consensus 32 sYsGlGSs 39 (40)
T 3arc_J 32 AYAGLGSS 39 (40)
T ss_dssp HSSSTTSC
T ss_pred cccccCCC
Confidence 67777765
No 17
>1jdp_H CNP, C-type natriuretic peptide; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens}
Probab=31.11 E-value=14 Score=21.36 Aligned_cols=9 Identities=56% Similarity=1.040 Sum_probs=7.2
Q ss_pred ccCCCCcch
Q 024892 244 SYPGLGCST 252 (261)
Q Consensus 244 ~~~~~~~~~ 252 (261)
|.||+||..
T Consensus 16 s~SglGC~~ 24 (26)
T 1jdp_H 16 SMSGLGCXX 24 (26)
T ss_pred cccCCCccc
Confidence 678999964
No 18
>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}
Probab=30.84 E-value=56 Score=24.35 Aligned_cols=43 Identities=12% Similarity=0.114 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhCCceeEEEEeECCCCceeEEEEEecCCCEEEec
Q 024892 166 HLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSKLIDM 211 (261)
Q Consensus 166 q~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~~~gd~viD~ 211 (261)
.-..+.+.|...|+ ..+.+.....|.--|=|.|.++ |..|+|-
T Consensus 18 ra~~laqeLl~~Fp-~~l~V~~~l~p~~~G~FEV~vn--g~lV~SK 60 (96)
T 2npb_A 18 KYLQLKEKLEHEFP-GCLDICGEGTPQVTGFFEVTVA--GKLVHSK 60 (96)
T ss_dssp HHHHHHHHHHHHSB-TTEEEEECCCSSCCSCCEEEET--TEEEEET
T ss_pred HHHHHHHHHHHhCC-cceEEEEEEcCCCCcEEEEEEC--CEEEEEE
Confidence 44667888888998 4688888888988888999995 6667663
No 19
>2aya_A DNA polymerase III subunit TAU; KH-fold, C-terminus of polymerase III TAU subunit, transferase; HET: DNA; NMR {Escherichia coli}
Probab=29.31 E-value=67 Score=24.75 Aligned_cols=41 Identities=20% Similarity=0.171 Sum_probs=30.3
Q ss_pred CceeEEEEe--ecCCCHHHHHHHHHHHHHHhCCceeEEEEeECC
Q 024892 150 NTEMAVVSS--VVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDP 191 (261)
Q Consensus 150 g~~~~~VtS--A~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDp 191 (261)
+.+...|.+ .+=.++...++|.+.|+..+| +.|++.+.++.
T Consensus 53 ~~~~L~l~~~~~hL~~~~~~~~L~~ALs~~~G-~~v~L~i~~g~ 95 (128)
T 2aya_A 53 NAVCLHLRSSQRHLNNRGAQQKLAEALSMLKG-STVELTIVEDD 95 (128)
T ss_dssp SEEEEEECGGGTTTCCHHHHHHHHHHHHHHHS-SCCEEEEEECC
T ss_pred CEEEEEECHHHHHhCCHHHHHHHHHHHHHHHC-CCEEEEEEECC
Confidence 344444444 334689999999999999999 78998887643
No 20
>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_F
Probab=29.13 E-value=62 Score=24.34 Aligned_cols=51 Identities=16% Similarity=0.142 Sum_probs=36.9
Q ss_pred cCceeEEEEeecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCceeEEEEEecCCCE
Q 024892 149 TNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSK 207 (261)
Q Consensus 149 ~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~~~gd~ 207 (261)
++.-.+++++-.+ .+..+++|.+.|+++++. .-.+ +-+|+ +|-.|++. ||.
T Consensus 27 ~g~K~VT~V~Gl~-~~~dlk~laK~lKkk~ac-ggsV--~~~~~--~g~~I~iQ--GD~ 77 (101)
T 2xzm_F 27 RGRKCFTTVEGIP-PEFDYEKIMKYWKKWLSC-NATI--VEEDE--GKKVIKLN--GDH 77 (101)
T ss_dssp ETTEEEEEEECCC-TTSCTHHHHHHHHHHHTS-CCCE--EECST--TCEEEEEE--SCC
T ss_pred cCCccEEEEecCC-CchhHHHHHHHHHHHhcC-CeEE--ecCCC--CceEEEEe--CcH
Confidence 3455677777777 788899999999999973 2223 23466 78999997 773
No 21
>1r4g_A RNA polymerase alpha subunit; three helix-bundle, viral protein, transferase; NMR {Sendai virus} SCOP: a.8.5.1
Probab=27.05 E-value=1.4e+02 Score=19.76 Aligned_cols=41 Identities=7% Similarity=0.160 Sum_probs=33.0
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 024892 86 QIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILID 127 (261)
Q Consensus 86 ~l~~~L~sP~i~~eeK~~lL~~l~~~~~~s~~~~nFL~lLie 127 (261)
.++-++.+..++..+|...+..+-.- +-++++.++..+.-|
T Consensus 6 SL~~vI~nS~LS~~~K~sYi~~L~~C-ktdqEV~~~Memf~E 46 (53)
T 1r4g_A 6 SLRLVIESSPLSRAEKAAYVKSLSKC-KTDQEVKAVMELVEE 46 (53)
T ss_dssp HHHHHHTTSCCCSHHHHHHHHHHHTC-CSSHHHHHHHHHHHH
T ss_pred hHhhhhcCCcccHHHHHHHHHHHHHc-cchHHHHHHHHHHHH
Confidence 45667788889999999999998754 678999888876654
No 22
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=24.47 E-value=52 Score=22.19 Aligned_cols=20 Identities=15% Similarity=0.476 Sum_probs=15.1
Q ss_pred HHHhcCCCC---CHHHHHHHHHH
Q 024892 88 HEFFVNPTI---DIEKKREMVDE 107 (261)
Q Consensus 88 ~~~L~sP~i---~~eeK~~lL~~ 107 (261)
..||.||.+ |.++|.+||..
T Consensus 17 v~FL~dp~V~~sp~~~K~~FL~s 39 (54)
T 3ff5_A 17 VKFLQNSRVRQSPLATRRAFLKK 39 (54)
T ss_dssp HHHHHCTTGGGSCHHHHHHHHHH
T ss_pred HHHhCChhhhcCCHHHHHHHHHH
Confidence 357777766 78888888875
No 23
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=24.16 E-value=86 Score=19.14 Aligned_cols=26 Identities=15% Similarity=0.382 Sum_probs=22.3
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhh
Q 024892 85 KQIHEFFVNPTIDIEKKREMVDEICK 110 (261)
Q Consensus 85 ~~l~~~L~sP~i~~eeK~~lL~~l~~ 110 (261)
..|-++|..|.++.++|-..|..+-+
T Consensus 7 naFYevLh~~nLtEeQrn~yI~slkd 32 (34)
T 1l6x_B 7 RRFYEALHDPNLNEEQRNAKIKSIRD 32 (34)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHhHHHHHhc
Confidence 46778999999999999999988754
No 24
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=23.83 E-value=1.1e+02 Score=22.91 Aligned_cols=76 Identities=7% Similarity=0.141 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHcCChhhHHH---------HHHHHHHHHHHHcCce---eEEEEeecCCCHHHHHHHHHHHHHHhCCc
Q 024892 114 LQPLTGNFLNILIDAKRVDVVKD---------IVKEFEEVYNKMTNTE---MAVVSSVVKLESEHLAQIAKQVQKLTGAK 181 (261)
Q Consensus 114 ~s~~~~nFL~lLien~Rl~~L~~---------I~~~f~~l~~~~~g~~---~~~VtSA~~Lseeq~~~L~~~L~k~~g~k 181 (261)
+++.+..+++-++..+++-++.. -+..-.+++++. |+- ...+ .++++ ..+.+.|.+..|.
T Consensus 1 ~~~~~~~~v~~~i~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~-gv~~~~~~~~----dv~~~--~~~~~~l~~~sg~- 72 (121)
T 3gx8_A 1 LSTEIRKAIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQ-GVDPAKFAAY----NVLED--PELREGIKEFSEW- 72 (121)
T ss_dssp -CHHHHHHHHHHHHSCSEEEEESBCSSSBCTTHHHHHHHHHHHH-TBCGGGEEEE----ECTTC--HHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHhccCCEEEEEeccCCCCCCccHHHHHHHHHHc-CCCcceEEEE----EecCC--HHHHHHHHHHhCC-
Confidence 36778888888888888766654 345555555554 433 2222 12221 3455667777784
Q ss_pred eeEEEEeECCCCceeE
Q 024892 182 NVRIKTVIDPSLVAGF 197 (261)
Q Consensus 182 ~I~l~~~VDpsLIGG~ 197 (261)
.-.....||-..|||+
T Consensus 73 ~tvP~vfI~g~~iGG~ 88 (121)
T 3gx8_A 73 PTIPQLYVNKEFIGGC 88 (121)
T ss_dssp CSSCEEEETTEEEESH
T ss_pred CCCCeEEECCEEEecH
Confidence 3445667788888875
No 25
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=23.77 E-value=1.2e+02 Score=19.46 Aligned_cols=25 Identities=8% Similarity=0.190 Sum_probs=19.3
Q ss_pred eEEEEeecCCCHHHHHHHHHHHHHH
Q 024892 153 MAVVSSVVKLESEHLAQIAKQVQKL 177 (261)
Q Consensus 153 ~~~VtSA~~Lseeq~~~L~~~L~k~ 177 (261)
.++|.+....+++|+++|.+.|.+.
T Consensus 3 ~i~i~~~~g~s~eqk~~l~~~lt~~ 27 (64)
T 3abf_A 3 VLKVTLLEGRPPEKKRELVRRLTEM 27 (64)
T ss_dssp EEEEEEETTCCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH
Confidence 3567777789999999988877654
No 26
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=23.22 E-value=1.2e+02 Score=22.22 Aligned_cols=44 Identities=16% Similarity=0.201 Sum_probs=29.6
Q ss_pred CceeEEEEeecC---C--CHHHHHHHHHHHHHHhCC--ceeEEE--EeECCCC
Q 024892 150 NTEMAVVSSVVK---L--ESEHLAQIAKQVQKLTGA--KNVRIK--TVIDPSL 193 (261)
Q Consensus 150 g~~~~~VtSA~~---L--seeq~~~L~~~L~k~~g~--k~I~l~--~~VDpsL 193 (261)
..+.++|+||.| + .-..+++|++.|++.++. +++.+. ..-+|++
T Consensus 35 ~~i~I~I~tarPg~vIGkkG~~Ie~L~~~l~k~~~~~~~~v~I~I~eV~~P~l 87 (92)
T 1wh9_A 35 TRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGS 87 (92)
T ss_dssp SCEEEEEEESCHHHHHCGGGHHHHHHHHHHHHHHCCCTTSEEEEEEECCCSCC
T ss_pred CeEEEEEEeCCCceEEcCCcHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCc
Confidence 456677889987 2 335589999999999952 456553 3335554
No 27
>1ic9_A TH10AOX; three stranded antiparallel beta-sheet mini-protein motif de novo protein design; HET: DPR DAL; NMR {Synthetic} SCOP: k.26.1.1 PDB: 1ico_A* 1icl_A*
Probab=23.08 E-value=17 Score=20.91 Aligned_cols=16 Identities=38% Similarity=0.910 Sum_probs=12.2
Q ss_pred ccccCCCCcchhhhhh
Q 024892 242 RYSYPGLGCSTIRDAK 257 (261)
Q Consensus 242 ~~~~~~~~~~~~~~~~ 257 (261)
-|.+.|.||.|...|-
T Consensus 9 sytfrgpgcptlkpai 24 (29)
T 1ic9_A 9 SYTFRGPGCPTLKPAI 24 (29)
T ss_dssp TEEEECSCCCCCCTTC
T ss_pred ceeecCCCCCccccee
Confidence 3667899999987653
No 28
>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae}
Probab=22.99 E-value=1e+02 Score=23.37 Aligned_cols=51 Identities=27% Similarity=0.291 Sum_probs=36.3
Q ss_pred cCceeEEEEeecCCCHHHHHHHHHHHHHHhCCceeEEEEeECCCCceeEEEEEecCCCE
Q 024892 149 TNTEMAVVSSVVKLESEHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTIRYGKWGSK 207 (261)
Q Consensus 149 ~g~~~~~VtSA~~Lseeq~~~L~~~L~k~~g~k~I~l~~~VDpsLIGG~iI~i~~~gd~ 207 (261)
++.-.+++.+-.+ ++..+++|.+.|+++++. .-.+ +-+|+ +|-.|++. ||.
T Consensus 34 ~g~K~VT~V~Gl~-~~~dlk~lak~lKkk~ac-ggsV--~~~~~--~g~~I~iQ--GD~ 84 (108)
T 2ogh_A 34 NGRKTLTTVQGVP-EEYDLKRILKVLKKDFAC-NGNI--VKDPE--MGEIIQLQ--GDQ 84 (108)
T ss_dssp SSSCCEEEEECCC-TTSCHHHHHHHHHHHHCC-CEEE--ECCTT--SSCEEEEE--SSC
T ss_pred cCCceEEEEeCCC-cchhHHHHHHHHHHHhcC-ceEE--ecCCC--CceEEEEc--CCH
Confidence 3455677777776 466799999999999984 3333 34566 58888887 773
No 29
>3rfi_A Asp; PSI, saposin, hydrolase; 1.90A {Solanum tuberosum}
Probab=20.30 E-value=94 Score=23.17 Aligned_cols=37 Identities=16% Similarity=0.182 Sum_probs=24.7
Q ss_pred CCchhhhhh--HHHHHHHHHHHHHHHHhCCCHHHHHHHH
Q 024892 39 RGAHGIRMS--ATVATSYAIALVDLAKANNTLESTSADV 75 (261)
Q Consensus 39 ~~~~~~~M~--~~iA~~YAkALfe~A~e~~~le~v~~eL 75 (261)
+||+|+--. ..+...|+..+++.....-.-+.+-..+
T Consensus 1 ~~a~g~~~~~C~~~V~~Y~~~ii~~l~~~~~P~~iC~~l 39 (108)
T 3rfi_A 1 GSAMAIVSMECKTIVSQYGEMIWDLLVSGVRPDQVCSQA 39 (108)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHT
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHc
Confidence 588998777 7999999999999765545555555543
No 30
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=20.21 E-value=1.3e+02 Score=19.59 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=18.4
Q ss_pred EEEEeecCCCHHHHHHHHHHHHHH
Q 024892 154 AVVSSVVKLESEHLAQIAKQVQKL 177 (261)
Q Consensus 154 ~~VtSA~~Lseeq~~~L~~~L~k~ 177 (261)
++|+. ...|++|+++|.+.+...
T Consensus 3 I~I~~-~grt~eqK~~L~~~it~~ 25 (62)
T 3m20_A 3 LIVYG-PKLDVGKKREFVERLTSV 25 (62)
T ss_dssp EEEEC-SCCCHHHHHHHHHHHHHH
T ss_pred EEEEE-CCCCHHHHHHHHHHHHHH
Confidence 56666 789999999998877654
Done!