BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024893
(261 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O82743|AGL19_ARATH Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana
GN=AGL19 PE=1 SV=1
Length = 219
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 75/154 (48%), Gaps = 14/154 (9%)
Query: 19 ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEK 78
TF KR+N L+KKA+E + LCD EV ++I+ P+ K + + + + I +Y++
Sbjct: 19 VTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSSS-------IAATIERYQR 71
Query: 79 KISAVDHGQHRTLSLSKFDESKM-RQVDDAATRACKKICVGDFTTWDQGMDSLSEDQLKM 137
+I + + R D S+ R T+ +++ + +G+D+ S ++L+
Sbjct: 72 RIKEIGNNHKRN------DNSQQARDETSGLTKKIEQLEISKRKLLGEGIDACSIEELQQ 125
Query: 138 ILSTMDDKLKDVDRKLNTIKRDQNVVNKATSRKL 171
+ + +D L + K + R++ KA R L
Sbjct: 126 LENQLDRSLSRIRAKKYQLLREEIEKLKAEERNL 159
>sp|Q7XJK5|AGL90_ARATH Agamous-like MADS-box protein AGL90 OS=Arabidopsis thaliana
GN=AGL90 PE=1 SV=2
Length = 320
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 6 LKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSK 65
+KL E++ +F KRKN + KK +E +TLC V+ C +IY P + PE+W S+
Sbjct: 4 VKLSLIANERSRKTSFMKRKNGIFKKLHELSTLCGVQACALIYSPFIP----VPESWPSR 59
Query: 66 EG 67
EG
Sbjct: 60 EG 61
>sp|Q38838|AGL14_ARATH Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana
GN=AGL14 PE=1 SV=2
Length = 221
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 17/134 (12%)
Query: 19 ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEK 78
TF KR+N L+KKA+E + LCD EV +II+ P+ K + S + + +Y+K
Sbjct: 19 VTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEF------SSSSSIPKTVERYQK 72
Query: 79 KISAVDHGQHRTLSLSKFDESKMRQVDDAATRACKKICVGDFTT---WDQGMDSLSEDQL 135
+I + R D S+ Q D +KI + +T +G+D+ S ++L
Sbjct: 73 RIQDLGSNHKRN------DNSQ--QSKDETYGLARKIEHLEISTRKMMGEGLDASSIEEL 124
Query: 136 KMILSTMDDKLKDV 149
+ + + +D L +
Sbjct: 125 QQLENQLDRSLMKI 138
>sp|Q7XJK6|AGL36_ARATH Agamous-like MADS-box protein AGL36 OS=Arabidopsis thaliana
GN=AGL36 PE=1 SV=1
Length = 366
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 6 LKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSK 65
+KL E++ +F KRK+ + KK +E +TLC V+ C +IY P + PE+W S+
Sbjct: 4 VKLSLIANERSRKTSFIKRKDGIFKKLHELSTLCGVQACALIYSPFIP----VPESWPSR 59
Query: 66 EG 67
EG
Sbjct: 60 EG 61
>sp|Q0J466|MADS7_ORYSJ MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica
GN=MADS7 PE=1 SV=2
Length = 249
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 90/209 (43%), Gaps = 40/209 (19%)
Query: 19 ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEK 78
TF KR+N L+KKAYE + LCD EV +II+ + K + +T + KY+K
Sbjct: 19 VTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEF------CSTQSMTKTLEKYQK 72
Query: 79 -----KISAVDHGQHRTLSLSKFDESKMRQVDDAATRACKKICVGDFTTWDQGMDSLSED 133
+AV + + L S+ + K++ + R + + D +DSL
Sbjct: 73 CSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGED-------LDSLGIK 125
Query: 134 QLKMILSTMDDKLKDVDR--------KLNTIKRDQNVV---NKATSRKLEHDHSNDAK-- 180
+L+ + +D LK V +L ++R + +V N+ RKLE SN +
Sbjct: 126 ELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLE--ESNHVRGQ 183
Query: 181 -------SLVNLQPAYQVSQKLPSDSSFM 202
+L+ + +V Q L + F
Sbjct: 184 QVWEQGCNLIGYERQPEVQQPLHGGNGFF 212
>sp|P0C5B0|MADS7_ORYSI MADS-box transcription factor 7 OS=Oryza sativa subsp. indica
GN=MADS7 PE=2 SV=2
Length = 249
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 90/209 (43%), Gaps = 40/209 (19%)
Query: 19 ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEK 78
TF KR+N L+KKAYE + LCD EV +II+ + K + +T + KY+K
Sbjct: 19 VTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEF------CSTQSMTKTLEKYQK 72
Query: 79 -----KISAVDHGQHRTLSLSKFDESKMRQVDDAATRACKKICVGDFTTWDQGMDSLSED 133
+AV + + L S+ + K++ + R + + D +DSL
Sbjct: 73 CSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGED-------LDSLGIK 125
Query: 134 QLKMILSTMDDKLKDVDR--------KLNTIKRDQNVV---NKATSRKLEHDHSNDAK-- 180
+L+ + +D LK V +L ++R + +V N+ RKLE SN +
Sbjct: 126 ELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLE--ESNHVRGQ 183
Query: 181 -------SLVNLQPAYQVSQKLPSDSSFM 202
+L+ + +V Q L + F
Sbjct: 184 QVWEQGCNLIGYERQPEVQQPLHGGNGFF 212
>sp|Q9C6V4|AGL92_ARATH Agamous-like MADS-box protein AGL92 OS=Arabidopsis thaliana
GN=AGL92 PE=1 SV=1
Length = 464
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Query: 19 ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEK 78
ATF+KR + KK +E TTLCD++ C +IY P P W S EG + +I ++ +
Sbjct: 18 ATFRKRNAGIRKKLHELTTLCDIKACAVIYSP-----FENPTVWPSTEG-VQEVISEFME 71
Query: 79 K 79
K
Sbjct: 72 K 72
>sp|P0C5B2|MAD56_ORYSJ MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica
GN=MADS56 PE=2 SV=1
Length = 233
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 82/185 (44%), Gaps = 17/185 (9%)
Query: 19 ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEK 78
TF KR+N L+KKA+E + LCD EV +I++ P+ + + + L I +Y
Sbjct: 19 VTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEF------ASAPSLQKTIDRY-- 70
Query: 79 KISAVDHGQHRTLSLSKFDESKMRQVDDAATRACKKICVGDFT---TWDQGMDSLSEDQL 135
K DH ++T+ + ++QV D KK+ D + + ++ S ++L
Sbjct: 71 KAYTKDHVNNKTI------QQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGFSIEEL 124
Query: 136 KMILSTMDDKLKDVDRKLNTIKRDQNVVNKATSRKLEHDHSNDAKSLVNLQPAYQVSQKL 195
+ + ++ L + K + Q K R L D+ N NL+ A V+ +
Sbjct: 125 RGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTLLKDNENLRGKHRNLEAAALVANHM 184
Query: 196 PSDSS 200
+ ++
Sbjct: 185 TTTTA 189
>sp|O64645|SOC1_ARATH MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1
Length = 214
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 19 ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVK 53
TF KR+N L+KKA+E + LCD EV +II+ PK K
Sbjct: 19 VTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGK 53
>sp|A2Z9Q7|MAD56_ORYSI MADS-box transcription factor 56 OS=Oryza sativa subsp. indica
GN=MADS56 PE=2 SV=2
Length = 233
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 83/185 (44%), Gaps = 17/185 (9%)
Query: 19 ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEK 78
TF KR+N L+KKA+E + LCD EV +I++ P+ + + + L I +Y
Sbjct: 19 VTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEF------ASAPSLQKTIDRY-- 70
Query: 79 KISAVDHGQHRTLSLSKFDESKMRQVDDAATRACKKICVGDFT---TWDQGMDSLSEDQL 135
K DH ++T+ + ++QV D KK+ D + + ++ S ++L
Sbjct: 71 KAYTKDHVNNKTI------QQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGCSIEEL 124
Query: 136 KMILSTMDDKLKDVDRKLNTIKRDQNVVNKATSRKLEHDHSNDAKSLVNLQPAYQVSQKL 195
+ + ++ L ++ K + Q K R L D+ N NL+ A V+ +
Sbjct: 125 RGLEMKLEKSLHNIRLKKTELLERQIAKLKEKERTLLKDNENLRGKHRNLEAAALVANHM 184
Query: 196 PSDSS 200
+ ++
Sbjct: 185 TTTTA 189
>sp|Q9SAR1|MADS8_ORYSJ MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica
GN=MADS8 PE=1 SV=1
Length = 248
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 92/210 (43%), Gaps = 33/210 (15%)
Query: 19 ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEK 78
TF KR+N L+KKAYE + LCD EV +II+ + K + +T + +Y+K
Sbjct: 19 VTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEF------CSGQSMTRTLERYQK 72
Query: 79 -----KISAVDHGQHRTLSLSKFDESKMRQVDDAATRACKKICVGDFTTWDQGMDSLSE- 132
+A+ + ++ + S+ + K++ + R + + D T G+ L +
Sbjct: 73 FSYGGPDTAIQNKENELVQSSRNEYLKLKARVENLQRTQRNLLGEDLGTL--GIKELEQL 130
Query: 133 -----DQLKMILST----MDDKLKDVDRKLNTIKRDQNV--VNKATSRKLEHDHSNDAKS 181
L+ I ST M D+L D+ R R+Q + NK RKLE SN
Sbjct: 131 EKQLDSSLRHIRSTRTQHMLDQLTDLQR------REQMLCEANKCLRRKLE--ESNQLHG 182
Query: 182 LVNLQPAYQVSQKLPSDSSFMEIQCGGGSG 211
V A + + S + ++ GG+G
Sbjct: 183 QVWEHGATLLGYERQSPHAVQQVPPHGGNG 212
>sp|Q9XJ60|MAD50_ORYSJ MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica
GN=MADS50 PE=2 SV=1
Length = 230
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 19 ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVK 53
TF KR+N L+KKA+E + LCD EV +I++ P+ K
Sbjct: 19 VTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGK 53
>sp|Q7XJK8|PHE2_ARATH MADS-box transcription factor PHERES 2 OS=Arabidopsis thaliana
GN=PHE2 PE=1 SV=1
Length = 278
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Query: 20 TFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEKK 79
TF KRK + KK E TLC VE C ++Y P + PE W S+EG + ++ K+ +
Sbjct: 19 TFTKRKKGMTKKLTELVTLCGVEACAVVYSP----FNSIPEAWPSREG-VEDVVSKF-ME 72
Query: 80 ISAVD 84
+S +D
Sbjct: 73 LSVLD 77
>sp|Q40704|MADS3_ORYSJ MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica
GN=MADS3 PE=2 SV=1
Length = 236
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 20/109 (18%)
Query: 19 ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEK 78
TF KR+N L+KKAYE + LCD EV +I++ S + + + S + +Y+K
Sbjct: 19 VTFCKRRNGLLKKAYELSVLCDAEVALIVF-------SSRGRLYEYANNSVKSTVERYKK 71
Query: 79 KIS--------AVDHGQHRTLSLSKFDESKMRQVDDAATRACKKICVGD 119
S A + QH + + SK+RQ + A + VGD
Sbjct: 72 ANSDTSNSGTVAEVNAQH-----YQQESSKLRQQISSLQNANSRTIVGD 115
>sp|O65874|MTF1_PEA MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1
Length = 247
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 65/151 (43%), Gaps = 26/151 (17%)
Query: 19 ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSL-------------KPETWTSK 65
TF KR+N L+KKAYE + LCD EV +I++ + K + + + +
Sbjct: 19 VTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSSMLKTLERYQKCNYGAP 78
Query: 66 EGELTSIIRKYEKKISAVDHGQHRTLSLSKFDESKMRQVDDAATRACKKICVGDFTTWDQ 125
EG +TS ++ + Q L L ES R + + D T ++
Sbjct: 79 EGNVTS-----KEALVLELSSQQEYLKLKARYESLQRSQRNLMGEDLGPLSSKDLETLER 133
Query: 126 GMDSLSEDQLKMILST----MDDKLKDVDRK 152
+DS LK I ST M D+L D+ RK
Sbjct: 134 QLDS----SLKQIRSTRTQFMLDQLGDLQRK 160
>sp|Q6Q9I2|MAD15_ORYSJ MADS-box transcription factor 15 OS=Oryza sativa subsp. japonica
GN=MADS15 PE=1 SV=2
Length = 267
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 6/60 (10%)
Query: 19 ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEK 78
TF KR+N L+KKA+E + LCD EV I++ PK K + + + + I+ +YE+
Sbjct: 19 VTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKLYE------YATDSRMDKILERYER 72
>sp|P38128|SMP1_YEAST Transcription factor SMP1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SMP1 PE=1 SV=1
Length = 452
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 1 MACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYG 49
M + +++EP K ++ TF KRK L KKA+E + LC V++ +II G
Sbjct: 1 MGRRKIEIEPIKDDRNRTVTFIKRKAGLFKKAHELSVLCQVDIAVIILG 49
>sp|Q6EU39|MADS6_ORYSJ MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica
GN=MADS6 PE=1 SV=1
Length = 250
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 20 TFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVK 53
TF KR+N L+KKAYE + LCD EV +II+ + K
Sbjct: 20 TFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGK 53
>sp|Q39685|CMB1_DIACA MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1
Length = 233
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 87/197 (44%), Gaps = 37/197 (18%)
Query: 19 ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEK 78
TF KR+N L+KKAYE + LCD EV +I++ + K + TS + K +
Sbjct: 19 VTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCS----------TSCMNKTLE 68
Query: 79 KISAVDHGQHRTLSLSKFDES------KMRQVDDAATRACKKIC---VGDFTTWD-QGMD 128
+ +G T SK ES K++ D R+ + + +G+ +T + + ++
Sbjct: 69 RYQRCSYGSLETSQPSKETESSYQEYLKLKAKVDVLQRSHRNLLGEDLGELSTKELEQLE 128
Query: 129 SLSEDQLKMILST----MDDKLKDVDRKLNTIKRDQNVVNKATSRKLEHDHSNDAKSLVN 184
+ L+ I S M D+L D+ +K + N+A KLE +S +
Sbjct: 129 HQLDKSLRQIRSIKTQHMLDQLADLQKKEEMLFES----NRALKTKLE-------ESCAS 177
Query: 185 LQPAYQVSQKLPSDSSF 201
+P + V Q P D F
Sbjct: 178 FRPNWDVRQ--PGDGFF 192
>sp|Q03489|AGL9_PETHY Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida
GN=FBP2 PE=1 SV=2
Length = 241
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 19 ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVK 53
TF KR+N L+KKAYE + LCD EV +II+ + K
Sbjct: 19 VTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGK 53
>sp|Q01540|AG_BRANA Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2
SV=1
Length = 252
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 19 ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEK 78
TF KR+N L+KKAYE + LCD EV +I++ S + + + I +Y+K
Sbjct: 35 VTFCKRRNGLLKKAYELSVLCDAEVALIVF-------SSRGRLYEYSNNSVKGTIERYKK 87
Query: 79 KIS 81
IS
Sbjct: 88 AIS 90
>sp|O04067|AGL9_SINAL Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba
GN=AGL9 PE=2 SV=1
Length = 254
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 19 ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVK 53
TF KR+N L+KKAYE + LCD EV +II+ + K
Sbjct: 19 VTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGK 53
>sp|Q7XUN2|MAD17_ORYSJ MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica
GN=MADS17 PE=1 SV=2
Length = 249
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 19 ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVK 53
TF KR+N L+KKAYE + LCD EV +II+ + K
Sbjct: 19 VTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGK 53
>sp|P17839|AG_ARATH Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana GN=AG
PE=1 SV=2
Length = 252
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 19 ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEK 78
TF KR+N L+KKAYE + LCD EV +I++ S + + + I +Y+K
Sbjct: 35 VTFCKRRNGLLKKAYELSVLCDAEVALIVF-------SSRGRLYEYSNNSVKGTIERYKK 87
Query: 79 KIS 81
IS
Sbjct: 88 AIS 90
>sp|Q42464|AGL9_SOLLC Agamous-like MADS-box protein AGL9 homolog OS=Solanum
lycopersicum GN=TDR5 PE=2 SV=1
Length = 224
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 19 ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVK 53
TF KR+N L+KKAYE + LCD EV +II+ + K
Sbjct: 19 VTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGK 53
>sp|O22456|SEP3_ARATH Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3
PE=1 SV=1
Length = 251
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 19 ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSL 57
TF KR+N L+KKAYE + LCD EV +II+ + K +
Sbjct: 19 VTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEF 57
>sp|P29386|AGL6_ARATH Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana
GN=AGL6 PE=1 SV=2
Length = 252
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 19 ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVK 53
TF KR+N L+KKAYE + LCD EV +II+ + K
Sbjct: 19 VTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGK 53
>sp|P29382|SEP1_ARATH Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1
PE=1 SV=2
Length = 251
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 19 ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVK 53
TF KR+N L+KKAYE + LCD EV +II+ + K
Sbjct: 19 VTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGK 53
>sp|Q0DEB8|MADS5_ORYSJ MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica
GN=MADS5 PE=1 SV=1
Length = 225
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 19 ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPK 51
TF KR+N L+KKAYE + LCD EV +II+ +
Sbjct: 19 VTFAKRRNGLLKKAYELSVLCDAEVALIIFSTR 51
>sp|A2Y9P0|MADS5_ORYSI MADS-box transcription factor 5 OS=Oryza sativa subsp. indica
GN=MADS5 PE=2 SV=1
Length = 225
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 19 ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPK 51
TF KR+N L+KKAYE + LCD EV +II+ +
Sbjct: 19 VTFAKRRNGLLKKAYELSVLCDAEVALIIFSTR 51
>sp|Q10PZ9|MADS1_ORYSJ MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica
GN=MADS1 PE=1 SV=1
Length = 257
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 23/30 (76%)
Query: 19 ATFKKRKNSLMKKAYEFTTLCDVEVCIIIY 48
TF KR+N L+KKAYE + LCD EV +II+
Sbjct: 19 VTFAKRRNGLLKKAYELSLLCDAEVALIIF 48
>sp|A2XDY1|MADS1_ORYSI MADS-box transcription factor 1 OS=Oryza sativa subsp. indica
GN=MADS1 PE=2 SV=2
Length = 257
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 23/30 (76%)
Query: 19 ATFKKRKNSLMKKAYEFTTLCDVEVCIIIY 48
TF KR+N L+KKAYE + LCD EV +II+
Sbjct: 19 VTFAKRRNGLLKKAYELSLLCDAEVALIIF 48
>sp|Q03413|MEF2D_XENLA Myocyte-specific enhancer factor 2D homolog OS=Xenopus laevis
GN=mef2d PE=1 SV=1
Length = 498
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 1 MACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIY 48
M + ++++ E+ TF KRK LMKKAYE + LCD E+ +II+
Sbjct: 1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIF 48
>sp|Q14814|MEF2D_HUMAN Myocyte-specific enhancer factor 2D OS=Homo sapiens GN=MEF2D PE=1
SV=1
Length = 521
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 1 MACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIY 48
M + ++++ E+ TF KRK LMKKAYE + LCD E+ +II+
Sbjct: 1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIF 48
>sp|Q02080|MEF2B_HUMAN Myocyte-specific enhancer factor 2B OS=Homo sapiens GN=MEF2B PE=1
SV=2
Length = 365
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 20 TFKKRKNSLMKKAYEFTTLCDVEVCIIIY 48
TF KRK LMKKAYE + LCD E+ +II+
Sbjct: 20 TFTKRKFGLMKKAYELSVLCDCEIALIIF 48
>sp|Q63943|MEF2D_MOUSE Myocyte-specific enhancer factor 2D OS=Mus musculus GN=Mef2d PE=1
SV=2
Length = 514
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 1 MACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIY 48
M + ++++ E+ TF KRK LMKKAYE + LCD E+ +II+
Sbjct: 1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIF 48
>sp|O89038|MEF2D_RAT Myocyte-specific enhancer factor 2D OS=Rattus norvegicus GN=Mef2d
PE=1 SV=1
Length = 507
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 1 MACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIY 48
M + ++++ E+ TF KRK LMKKAYE + LCD E+ +II+
Sbjct: 1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIF 48
>sp|Q38836|AGL11_ARATH Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana
GN=AGL11 PE=1 SV=1
Length = 230
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 19 ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEK 78
TF KR+N L+KKAYE + LCD EV +I++ S + + + S I +Y+K
Sbjct: 19 VTFCKRRNGLLKKAYELSVLCDAEVALIVF-------STRGRLYEYANNNIRSTIERYKK 71
>sp|Q6Q9H6|MAD34_ORYSJ MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica
GN=MADS34 PE=2 SV=2
Length = 239
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Query: 19 ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEK 78
TF KR+N L+KKAYE + LCD EV ++++ H+ + ++S L ++ R Y++
Sbjct: 19 VTFAKRRNGLLKKAYELSILCDAEVALVLF-----SHAGRLYQFSSSSNMLKTLER-YQR 72
Query: 79 KISA 82
I A
Sbjct: 73 YIYA 76
>sp|P29383|AGL3_ARATH Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana
GN=AGL3 PE=2 SV=2
Length = 258
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 19 ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVK 53
TF KR+N L+KKAYE + LCD E+ ++I+ + K
Sbjct: 19 VTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGK 53
>sp|Q5REW7|MEF2A_PONAB Myocyte-specific enhancer factor 2A OS=Pongo abelii GN=MEF2A PE=2
SV=1
Length = 494
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 14 EKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIY 48
E+ TF KRK LMKKAYE + LCD E+ +II+
Sbjct: 14 ERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIF 48
>sp|A2ICN5|MEF2A_PIG Myocyte-specific enhancer factor 2A OS=Sus scrofa GN=MEF2A PE=2
SV=2
Length = 507
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 14 EKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIY 48
E+ TF KRK LMKKAYE + LCD E+ +II+
Sbjct: 14 ERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIF 48
>sp|Q60929|MEF2A_MOUSE Myocyte-specific enhancer factor 2A OS=Mus musculus GN=Mef2a PE=1
SV=2
Length = 498
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 14 EKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIY 48
E+ TF KRK LMKKAYE + LCD E+ +II+
Sbjct: 14 ERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIF 48
>sp|Q02078|MEF2A_HUMAN Myocyte-specific enhancer factor 2A OS=Homo sapiens GN=MEF2A PE=1
SV=1
Length = 507
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 14 EKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIY 48
E+ TF KRK LMKKAYE + LCD E+ +II+
Sbjct: 14 ERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIF 48
>sp|P29384|SEP2_ARATH Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2
PE=1 SV=1
Length = 250
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 19 ATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVK 53
TF KR+N L+KKAYE + LCD EV +I++ + K
Sbjct: 19 VTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGK 53
>sp|A2VDZ3|MEF2A_BOVIN Myocyte-specific enhancer factor 2A OS=Bos taurus GN=MEF2A PE=2
SV=1
Length = 492
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 14 EKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIY 48
E+ TF KRK LMKKAYE + LCD E+ +II+
Sbjct: 14 ERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIF 48
>sp|Q2MJT0|MEF2A_RAT Myocyte-specific enhancer factor 2A OS=Rattus norvegicus GN=Mef2a
PE=1 SV=1
Length = 495
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 14 EKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIY 48
E+ TF KRK LMKKAYE + LCD E+ +II+
Sbjct: 14 ERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIF 48
>sp|Q5R444|MEF2C_PONAB Myocyte-specific enhancer factor 2C OS=Pongo abelii GN=MEF2C PE=2
SV=1
Length = 473
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 14 EKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIY 48
E+ TF KRK LMKKAYE + LCD E+ +II+
Sbjct: 14 ERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIF 48
>sp|A4UTP7|MEF2C_PIG Myocyte-specific enhancer factor 2C OS=Sus scrofa GN=MEF2C PE=2
SV=1
Length = 463
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 14 EKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIY 48
E+ TF KRK LMKKAYE + LCD E+ +II+
Sbjct: 14 ERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIF 48
>sp|Q06413|MEF2C_HUMAN Myocyte-specific enhancer factor 2C OS=Homo sapiens GN=MEF2C PE=1
SV=1
Length = 473
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 14 EKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIY 48
E+ TF KRK LMKKAYE + LCD E+ +II+
Sbjct: 14 ERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIF 48
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.126 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,745,848
Number of Sequences: 539616
Number of extensions: 3582016
Number of successful extensions: 8611
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 8430
Number of HSP's gapped (non-prelim): 204
length of query: 261
length of database: 191,569,459
effective HSP length: 115
effective length of query: 146
effective length of database: 129,513,619
effective search space: 18908988374
effective search space used: 18908988374
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)