Query 024893
Match_columns 261
No_of_seqs 237 out of 1391
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 08:15:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024893.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024893hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0014 MADS box transcription 100.0 9.3E-35 2E-39 248.4 4.4 154 1-161 1-176 (195)
2 cd00265 MADS_MEF2_like MEF2 (m 100.0 3.1E-31 6.6E-36 195.0 3.9 73 2-81 1-73 (77)
3 cd00266 MADS_SRF_like SRF-like 100.0 4.4E-29 9.4E-34 186.2 4.4 74 2-81 1-74 (83)
4 smart00432 MADS MADS domain. 99.9 4E-28 8.6E-33 169.0 3.9 55 2-56 1-55 (59)
5 cd00120 MADS MADS: MCM1, Agamo 99.9 9.4E-28 2E-32 167.2 3.5 55 2-56 1-55 (59)
6 PF00319 SRF-TF: SRF-type tran 99.9 1.6E-26 3.5E-31 156.0 -1.6 51 9-64 1-51 (51)
7 KOG0015 Regulator of arginine 99.7 1.3E-17 2.7E-22 147.7 1.8 55 2-56 63-117 (338)
8 PF01486 K-box: K-box region; 99.5 3.9E-13 8.5E-18 103.6 9.4 86 94-183 14-99 (100)
9 COG5068 ARG80 Regulator of arg 99.3 2E-12 4.3E-17 119.7 3.1 56 1-56 81-136 (412)
10 PF06698 DUF1192: Protein of u 81.4 4 8.6E-05 28.4 4.6 33 122-154 13-45 (59)
11 PF10584 Proteasome_A_N: Prote 81.3 0.36 7.7E-06 27.1 -0.5 14 43-56 3-16 (23)
12 PF06005 DUF904: Protein of un 76.7 19 0.00041 25.9 7.2 45 130-179 1-45 (72)
13 KOG4637 Adaptor for phosphoino 67.4 3.7 8E-05 38.7 2.1 46 32-81 366-413 (464)
14 PRK04098 sec-independent trans 67.0 3.4 7.5E-05 34.4 1.6 30 43-81 15-44 (158)
15 KOG4797 Transcriptional regula 55.0 42 0.00092 26.2 5.6 30 149-179 65-94 (123)
16 PRK15422 septal ring assembly 54.3 81 0.0018 23.2 6.7 43 130-177 1-43 (79)
17 PF07106 TBPIP: Tat binding pr 52.1 84 0.0018 25.9 7.6 32 128-159 107-138 (169)
18 PF14357 DUF4404: Domain of un 48.5 25 0.00055 26.0 3.4 72 104-184 2-75 (85)
19 cd07429 Cby_like Chibby, a nuc 47.8 23 0.0005 27.6 3.2 21 163-183 76-96 (108)
20 PF14282 FlxA: FlxA-like prote 47.2 1.3E+02 0.0028 23.1 7.7 56 98-159 18-73 (106)
21 smart00787 Spc7 Spc7 kinetocho 45.1 2E+02 0.0043 26.6 9.5 33 124-156 195-227 (312)
22 PRK13169 DNA replication intia 44.7 1.4E+02 0.003 23.3 7.2 48 133-185 8-55 (110)
23 PRK10265 chaperone-modulator p 43.1 23 0.00049 27.0 2.5 78 32-115 10-94 (101)
24 KOG3048 Molecular chaperone Pr 42.4 63 0.0014 26.5 5.0 36 124-159 7-42 (153)
25 PLN02372 violaxanthin de-epoxi 42.1 2.7E+02 0.0059 26.9 9.9 11 43-53 316-326 (455)
26 PF08317 Spc7: Spc7 kinetochor 41.1 2.8E+02 0.0061 25.5 9.9 31 125-155 201-231 (325)
27 KOG4252 GTP-binding protein [S 38.5 28 0.00061 30.0 2.6 30 39-81 91-120 (246)
28 COG4575 ElaB Uncharacterized c 38.4 81 0.0018 24.4 4.9 29 129-157 33-61 (104)
29 COG3074 Uncharacterized protei 37.7 1.5E+02 0.0033 21.3 6.8 41 131-176 2-42 (79)
30 PF07106 TBPIP: Tat binding pr 37.4 1.3E+02 0.0028 24.8 6.4 54 97-155 114-167 (169)
31 COG1579 Zn-ribbon protein, pos 35.8 3.1E+02 0.0068 24.4 8.9 99 134-238 132-230 (239)
32 PRK00708 sec-independent trans 35.8 51 0.0011 28.7 3.8 30 43-81 15-44 (209)
33 PHA02592 52 DNA topisomerase I 35.3 3.2E+02 0.007 26.5 9.6 31 42-81 298-328 (439)
34 PLN03194 putative disease resi 34.5 35 0.00076 29.2 2.6 14 39-52 79-92 (187)
35 PF07888 CALCOCO1: Calcium bin 33.1 3.5E+02 0.0076 27.1 9.5 37 31-67 78-115 (546)
36 PF13591 MerR_2: MerR HTH fami 32.9 45 0.00097 24.4 2.7 74 32-112 3-83 (84)
37 PRK10132 hypothetical protein; 32.4 1E+02 0.0022 24.0 4.7 56 97-157 10-65 (108)
38 PF10481 CENP-F_N: Cenp-F N-te 31.6 4.1E+02 0.0089 24.3 8.9 32 157-188 100-131 (307)
39 COG4403 LcnDR2 Lantibiotic mod 30.0 21 0.00046 37.4 0.6 31 210-246 623-653 (963)
40 KOG0709 CREB/ATF family transc 29.7 72 0.0016 31.1 4.1 27 160-186 287-313 (472)
41 PRK13729 conjugal transfer pil 29.3 5.6E+02 0.012 25.2 11.0 22 162-183 100-121 (475)
42 PF10504 DUF2452: Protein of u 29.2 3.1E+02 0.0066 22.9 7.2 45 131-175 28-75 (159)
43 PF01166 TSC22: TSC-22/dip/bun 28.7 96 0.0021 21.5 3.4 22 159-180 21-42 (59)
44 PRK10404 hypothetical protein; 27.3 2.3E+02 0.005 21.6 5.8 30 129-158 30-59 (101)
45 PRK04654 sec-independent trans 26.4 1.2E+02 0.0025 26.6 4.4 10 43-52 15-24 (214)
46 PF10211 Ax_dynein_light: Axon 26.4 4E+02 0.0087 22.6 9.9 12 69-80 93-104 (189)
47 KOG3612 PHD Zn-finger protein 25.7 5E+02 0.011 26.1 9.0 73 34-114 403-475 (588)
48 PF06156 DUF972: Protein of un 25.6 3.2E+02 0.0069 21.1 7.8 48 133-185 8-55 (107)
49 PF04849 HAP1_N: HAP1 N-termin 24.3 2.5E+02 0.0054 26.0 6.4 90 95-185 163-267 (306)
50 PF07926 TPR_MLP1_2: TPR/MLP1/ 23.9 3.6E+02 0.0079 21.2 8.9 27 158-184 104-130 (132)
51 PF11802 CENP-K: Centromere-as 23.8 3.5E+02 0.0076 24.5 7.1 61 96-157 56-116 (268)
52 PF05812 Herpes_BLRF2: Herpesv 23.5 3.8E+02 0.0082 21.3 6.9 59 95-153 6-64 (118)
53 PF10491 Nrf1_DNA-bind: NLS-bi 23.5 1.3E+02 0.0028 26.3 4.1 44 32-79 45-88 (214)
54 PRK10884 SH3 domain-containing 23.3 4.2E+02 0.009 22.9 7.4 51 133-184 100-150 (206)
55 PF09798 LCD1: DNA damage chec 23.2 3E+02 0.0064 28.3 7.2 52 133-184 4-58 (654)
56 KOG1681 Enoyl-CoA isomerase [L 22.6 92 0.002 27.9 3.1 25 29-54 54-78 (292)
57 KOG0183 20S proteasome, regula 22.5 43 0.00093 29.4 1.1 16 41-56 4-19 (249)
58 KOG4149 Uncharacterized conser 22.5 37 0.00081 27.1 0.6 15 214-229 47-61 (129)
59 KOG0241 Kinesin-like protein [ 22.5 6.9E+02 0.015 27.3 9.6 15 101-115 366-380 (1714)
60 PF05957 DUF883: Bacterial pro 22.3 2.4E+02 0.0052 20.7 5.1 30 128-157 22-51 (94)
61 PF06937 EURL: EURL protein; 22.0 2.1E+02 0.0045 26.1 5.2 33 123-155 212-244 (285)
62 PF11944 DUF3461: Protein of u 22.0 1.1E+02 0.0024 24.4 3.2 24 132-155 101-124 (125)
63 KOG1118 Lysophosphatidic acid 22.0 6.6E+02 0.014 23.5 11.3 51 129-179 172-236 (366)
64 KOG0804 Cytoplasmic Zn-finger 21.2 7.6E+02 0.016 24.3 9.1 7 244-250 483-489 (493)
65 PRK09822 lipopolysaccharide co 21.0 57 0.0012 29.1 1.5 36 20-56 118-157 (269)
66 COG0139 HisI Phosphoribosyl-AM 20.9 41 0.00089 26.3 0.6 38 17-54 49-96 (111)
67 PF14662 CCDC155: Coiled-coil 20.6 3.3E+02 0.0072 23.4 6.0 47 132-179 69-115 (193)
68 TIGR01478 STEVOR variant surfa 20.5 2.8E+02 0.0062 25.4 5.9 45 7-78 25-69 (295)
69 PF14009 DUF4228: Domain of un 20.3 84 0.0018 25.4 2.4 33 40-79 14-46 (181)
No 1
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=100.00 E-value=9.3e-35 Score=248.44 Aligned_cols=154 Identities=20% Similarity=0.310 Sum_probs=109.0
Q ss_pred CCcccceeeeecCCCccccccccccchhhhhhhhhhcccCcceeeeeecCCCCCCCCCCccccCCcchHHHHHHHHHhhh
Q 024893 1 MACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEKKI 80 (261)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIIfS~~Gkl~~~~p~~~ps~s~sv~~IleRY~~~~ 80 (261)
|||+||+|++|+|+++|+|||+|||.||||||+||||||||+||||||||+|++|+ .||++ .+|.+|++||....
T Consensus 1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~----~~~~~-~~~~~v~~~~~~~~ 75 (195)
T KOG0014|consen 1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYE----FGSSD-ESVDAVVDRFLNLT 75 (195)
T ss_pred CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccc----cCCcc-hhHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999976 25443 35999999999876
Q ss_pred cccccCCccccccchhHHHH-HHH--------------HHHHHHHhchhcccc------cccccCCCCCCCCH-HHHHHH
Q 024893 81 SAVDHGQHRTLSLSKFDESK-MRQ--------------VDDAATRACKKICVG------DFTTWDQGMDSLSE-DQLKMI 138 (261)
Q Consensus 81 ~~~d~~~~k~~~l~~~~~~~-~~k--------------Lk~el~kl~ke~~~l------~~~~~gedL~~Ls~-eEL~~L 138 (261)
..... ++..+...+.... ... .......+.+....+ ...+.++++.+++. .+|..+
T Consensus 76 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~ 153 (195)
T KOG0014|consen 76 EPSRK--KKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSL 153 (195)
T ss_pred hhhhc--ccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcch
Confidence 63111 1111222221110 000 111111122211111 12345899999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhH
Q 024893 139 LSTMDDKLKDVDRKLNTIKRDQN 161 (261)
Q Consensus 139 E~~LE~~L~~Vr~Rk~~L~~~q~ 161 (261)
+..|+..+..++........+++
T Consensus 154 ~~~l~~~~~~~~~~~~~~~~~~~ 176 (195)
T KOG0014|consen 154 ESQLESSLHNSRSSKSKPLSDSN 176 (195)
T ss_pred hhHHHHhhcCCCCCCCcCCcchh
Confidence 99999999988887666554433
No 2
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.96 E-value=3.1e-31 Score=195.03 Aligned_cols=73 Identities=32% Similarity=0.534 Sum_probs=69.2
Q ss_pred CcccceeeeecCCCccccccccccchhhhhhhhhhcccCcceeeeeecCCCCCCCCCCccccCCcchHHHHHHHHHhhhc
Q 024893 2 ACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEKKIS 81 (261)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIIfS~~Gkl~~~~p~~~ps~s~sv~~IleRY~~~~~ 81 (261)
||+||+|++|+|+.+|++||+|||.||||||+||||||||+||||||||+|++|. |+++ ++++||+||...++
T Consensus 1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~-----f~s~--s~~~vl~ry~~~~~ 73 (77)
T cd00265 1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYE-----FSSP--SMEKIIERYQKTSG 73 (77)
T ss_pred CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEE-----ecCC--CHHHHHHHHHhccc
Confidence 8999999999999999999999999999999999999999999999999999765 8875 48999999999877
No 3
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.95 E-value=4.4e-29 Score=186.18 Aligned_cols=74 Identities=32% Similarity=0.560 Sum_probs=67.9
Q ss_pred CcccceeeeecCCCccccccccccchhhhhhhhhhcccCcceeeeeecCCCCCCCCCCccccCCcchHHHHHHHHHhhhc
Q 024893 2 ACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEKKIS 81 (261)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIIfS~~Gkl~~~~p~~~ps~s~sv~~IleRY~~~~~ 81 (261)
||+||+|++|+|+.+|++||+|||.||||||+||||||||+||+|||||+|+.+ ..||++ . +..+|+||...+.
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~----~~~~~~-~-~~~~l~~~~~~~~ 74 (83)
T cd00266 1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLY----VFWPSS-E-VEGVISRFEVLSA 74 (83)
T ss_pred CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcc----eecCcH-H-HHHHHHHHhhcCH
Confidence 899999999999999999999999999999999999999999999999999974 445543 3 9999999998876
No 4
>smart00432 MADS MADS domain.
Probab=99.94 E-value=4e-28 Score=169.00 Aligned_cols=55 Identities=33% Similarity=0.565 Sum_probs=53.6
Q ss_pred CcccceeeeecCCCccccccccccchhhhhhhhhhcccCcceeeeeecCCCCCCC
Q 024893 2 ACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHS 56 (261)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIIfS~~Gkl~~ 56 (261)
||+||+|++|+|+.+|++||+|||.||||||+||||||||+||+|||||+|++|.
T Consensus 1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~ 55 (59)
T smart00432 1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYE 55 (59)
T ss_pred CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeee
Confidence 8999999999999999999999999999999999999999999999999999854
No 5
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.94 E-value=9.4e-28 Score=167.23 Aligned_cols=55 Identities=33% Similarity=0.562 Sum_probs=53.5
Q ss_pred CcccceeeeecCCCccccccccccchhhhhhhhhhcccCcceeeeeecCCCCCCC
Q 024893 2 ACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHS 56 (261)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIIfS~~Gkl~~ 56 (261)
||+||+|++|+|+..|++||+|||.||||||+||||||||+||+|||||+|++|.
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~ 55 (59)
T cd00120 1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYE 55 (59)
T ss_pred CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCccc
Confidence 7999999999999999999999999999999999999999999999999999755
No 6
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=99.91 E-value=1.6e-26 Score=156.01 Aligned_cols=51 Identities=37% Similarity=0.601 Sum_probs=45.8
Q ss_pred eeecCCCccccccccccchhhhhhhhhhcccCcceeeeeecCCCCCCCCCCccccC
Q 024893 9 EPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTS 64 (261)
Q Consensus 9 k~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIIfS~~Gkl~~~~p~~~ps 64 (261)
|+|+|++.|++||+|||.||||||+|||+||||+||||||||+|++|. |||
T Consensus 1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~-----f~s 51 (51)
T PF00319_consen 1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYT-----FPS 51 (51)
T ss_dssp S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEE-----EES
T ss_pred CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEE-----ecC
Confidence 689999999999999999999999999999999999999999999865 985
No 7
>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.67 E-value=1.3e-17 Score=147.75 Aligned_cols=55 Identities=29% Similarity=0.397 Sum_probs=53.1
Q ss_pred CcccceeeeecCCCccccccccccchhhhhhhhhhcccCcceeeeeecCCCCCCC
Q 024893 2 ACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHS 56 (261)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIIfS~~Gkl~~ 56 (261)
||+||+|++|+|+..|.|||||||.||||||+|||||+|.+|-|+|.|.+|-+|-
T Consensus 63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyT 117 (338)
T KOG0015|consen 63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYT 117 (338)
T ss_pred ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEE
Confidence 7999999999999999999999999999999999999999999999999998754
No 8
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.46 E-value=3.9e-13 Score=103.60 Aligned_cols=86 Identities=15% Similarity=0.181 Sum_probs=80.3
Q ss_pred chhHHHHHHHHHHHHHHhchhcccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhh
Q 024893 94 SKFDESKMRQVDDAATRACKKICVGDFTTWDQGMDSLSEDQLKMILSTMDDKLKDVDRKLNTIKRDQNVVNKATSRKLEH 173 (261)
Q Consensus 94 ~~~~~~~~~kLk~el~kl~ke~~~l~~~~~gedL~~Ls~eEL~~LE~~LE~~L~~Vr~Rk~~L~~~q~~~~kkk~~~lee 173 (261)
.+.+..++.+|+.+++.|+...++++ |++|++|+++||.+||+.|+.+|..||+||.+++.+++..+++|+..+.+
T Consensus 14 ~e~~~~e~~~L~~~~~~L~~~~R~~~----GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~ 89 (100)
T PF01486_consen 14 HEELQQEIAKLRKENESLQKELRHLM----GEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEE 89 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc----cccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46688889999999999999988887 99999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHH
Q 024893 174 DHSNDAKSLV 183 (261)
Q Consensus 174 ~n~~L~~~l~ 183 (261)
+|..|...+.
T Consensus 90 en~~L~~~~~ 99 (100)
T PF01486_consen 90 ENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHhc
Confidence 9999987653
No 9
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.26 E-value=2e-12 Score=119.66 Aligned_cols=56 Identities=23% Similarity=0.360 Sum_probs=54.5
Q ss_pred CCcccceeeeecCCCccccccccccchhhhhhhhhhcccCcceeeeeecCCCCCCC
Q 024893 1 MACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHS 56 (261)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIIfS~~Gkl~~ 56 (261)
|||+||.|.+|+|+.+|.|||+||+.||+|||.||+||.+.+|.++|.|.+|++|.
T Consensus 81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~t 136 (412)
T COG5068 81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHT 136 (412)
T ss_pred cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceee
Confidence 78999999999999999999999999999999999999999999999999999865
No 10
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=81.43 E-value=4 Score=28.36 Aligned_cols=33 Identities=9% Similarity=0.282 Sum_probs=28.0
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 024893 122 TWDQGMDSLSEDQLKMILSTMDDKLKDVDRKLN 154 (261)
Q Consensus 122 ~~gedL~~Ls~eEL~~LE~~LE~~L~~Vr~Rk~ 154 (261)
..|+||+.||++||..-...|+.-+.+++.-+.
T Consensus 13 ~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~~~ 45 (59)
T PF06698_consen 13 EIGEDLSLLSVEELEERIALLEAEIARLEAAIA 45 (59)
T ss_pred ccCCCchhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348999999999999999999998888876543
No 11
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=81.29 E-value=0.36 Score=27.12 Aligned_cols=14 Identities=14% Similarity=0.230 Sum_probs=11.1
Q ss_pred eeeeeecCCCCCCC
Q 024893 43 VCIIIYGPKVKGHS 56 (261)
Q Consensus 43 ValIIfS~~Gkl~~ 56 (261)
-.+.+|||+|++|.
T Consensus 3 ~~~t~FSp~Grl~Q 16 (23)
T PF10584_consen 3 RSITTFSPDGRLFQ 16 (23)
T ss_dssp SSTTSBBTTSSBHH
T ss_pred CCceeECCCCeEEe
Confidence 35679999999964
No 12
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=76.68 E-value=19 Score=25.94 Aligned_cols=45 Identities=11% Similarity=0.203 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhH
Q 024893 130 LSEDQLKMILSTMDDKLKDVDRKLNTIKRDQNVVNKATSRKLEHDHSNDA 179 (261)
Q Consensus 130 Ls~eEL~~LE~~LE~~L~~Vr~Rk~~L~~~q~~~~kkk~~~lee~n~~L~ 179 (261)
++.+.|.+||..+..++..|.. | ..+++.++.+...|.++|..|.
T Consensus 1 M~~E~l~~LE~ki~~aveti~~----L-q~e~eeLke~n~~L~~e~~~L~ 45 (72)
T PF06005_consen 1 MSLELLEQLEEKIQQAVETIAL----L-QMENEELKEKNNELKEENEELK 45 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHH----H-HHHHHHHHHHHHhHHHHHHHHH
Confidence 4677888888888888877632 2 2235556666444444444444
No 13
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=67.38 E-value=3.7 Score=38.68 Aligned_cols=46 Identities=22% Similarity=0.408 Sum_probs=36.5
Q ss_pred hhhhhcccCcce--eeeeecCCCCCCCCCCccccCCcchHHHHHHHHHhhhc
Q 024893 32 AYEFTTLCDVEV--CIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEKKIS 81 (261)
Q Consensus 32 A~ELSvLCdaeV--alIIfS~~Gkl~~~~p~~~ps~s~sv~~IleRY~~~~~ 81 (261)
-+-|||+||-+| |||.-..+|=.|. +|+.+= +++++.+..|+..+-
T Consensus 366 ~yalSV~~~~~V~HClIy~tatG~GFa-~pyn~y---~tlk~lV~hY~h~SL 413 (464)
T KOG4637|consen 366 CYALSVVHDGEVKHCLIYQTATGFGFA-EPYNLY---STLKELVLHYQHTSL 413 (464)
T ss_pred ceEEEEEECCceeeeEEeecccccccc-chhHHH---HHHHHHHHHHhhhhH
Confidence 357999998887 9999999997776 555542 379999999998765
No 14
>PRK04098 sec-independent translocase; Provisional
Probab=66.98 E-value=3.4 Score=34.36 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=19.3
Q ss_pred eeeeeecCCCCCCCCCCccccCCcchHHHHHHHHHhhhc
Q 024893 43 VCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEKKIS 81 (261)
Q Consensus 43 ValIIfS~~Gkl~~~~p~~~ps~s~sv~~IleRY~~~~~ 81 (261)
||||||+|. |+ |.--..+-..+..|++...
T Consensus 15 VaLlvfGP~-KL--------P~~~r~lGk~ir~~K~~~~ 44 (158)
T PRK04098 15 VAIIFLGPD-KL--------PQAMVDIAKFFKAVKKTIN 44 (158)
T ss_pred HHHhhcCch-HH--------HHHHHHHHHHHHHHHHHHH
Confidence 789999996 54 3222356666777766544
No 15
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=54.97 E-value=42 Score=26.17 Aligned_cols=30 Identities=20% Similarity=0.194 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhhHHHHHHHhhhhhhhhhhhH
Q 024893 149 VDRKLNTIKRDQNVVNKATSRKLEHDHSNDA 179 (261)
Q Consensus 149 Vr~Rk~~L~~~q~~~~kkk~~~lee~n~~L~ 179 (261)
||+..+-|+ .||..+..+...|+.+|.-|.
T Consensus 65 VREEVe~Lk-~qI~eL~er~~~Le~EN~lLk 94 (123)
T KOG4797|consen 65 VREEVEVLK-EQIRELEERNSALERENSLLK 94 (123)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 444443332 345566666666677776655
No 16
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=54.28 E-value=81 Score=23.17 Aligned_cols=43 Identities=12% Similarity=0.190 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhh
Q 024893 130 LSEDQLKMILSTMDDKLKDVDRKLNTIKRDQNVVNKATSRKLEHDHSN 177 (261)
Q Consensus 130 Ls~eEL~~LE~~LE~~L~~Vr~Rk~~L~~~q~~~~kkk~~~lee~n~~ 177 (261)
+|.+=|.+||..+..++..| .|..-+++.+|.+...|.+++..
T Consensus 1 MS~EvleqLE~KIqqAvdtI-----~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777665 23334466777766666554443
No 17
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=52.09 E-value=84 Score=25.90 Aligned_cols=32 Identities=9% Similarity=0.467 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024893 128 DSLSEDQLKMILSTMDDKLKDVDRKLNTIKRD 159 (261)
Q Consensus 128 ~~Ls~eEL~~LE~~LE~~L~~Vr~Rk~~L~~~ 159 (261)
..++.+||......|+..+..+.+|+..|...
T Consensus 107 ~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~ 138 (169)
T PF07106_consen 107 SEPTNEELREEIEELEEEIEELEEKLEKLRSG 138 (169)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 47788999999999999999999998888754
No 18
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=48.52 E-value=25 Score=26.01 Aligned_cols=72 Identities=11% Similarity=0.131 Sum_probs=40.3
Q ss_pred HHHHHHHhchhcccccccccCCCCCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHH
Q 024893 104 VDDAATRACKKICVGDFTTWDQGMDSLSEDQLKMILSTMDDKLKD--VDRKLNTIKRDQNVVNKATSRKLEHDHSNDAKS 181 (261)
Q Consensus 104 Lk~el~kl~ke~~~l~~~~~gedL~~Ls~eEL~~LE~~LE~~L~~--Vr~Rk~~L~~~q~~~~kkk~~~lee~n~~L~~~ 181 (261)
|++.+++|+.++.+ ...+++-.-..|..|...|+..|.. -...-..-. .+.+..-....+..|+.|+..
T Consensus 2 L~~~L~~L~~eL~~------~~~ld~~~~~~L~~l~~dIe~~L~~~~~~~~~~~~l---~d~l~~av~~FE~~HP~l~~~ 72 (85)
T PF14357_consen 2 LQELLEKLHQELEQ------NPPLDEETRAELSSLDDDIEAQLAEEDEAEAEDESL---VDRLNEAVERFEASHPKLAGI 72 (85)
T ss_pred HHHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHHHHHHHhcCCcccccchhH---HHHHHHHHHHHHHhCCcHHHH
Confidence 45566666666544 3556666667788888888887766 110000001 122233344567788888865
Q ss_pred HHh
Q 024893 182 LVN 184 (261)
Q Consensus 182 l~~ 184 (261)
+.+
T Consensus 73 lr~ 75 (85)
T PF14357_consen 73 LRN 75 (85)
T ss_pred HHH
Confidence 543
No 19
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=47.77 E-value=23 Score=27.62 Aligned_cols=21 Identities=14% Similarity=0.099 Sum_probs=16.5
Q ss_pred HHHHHhhhhhhhhhhhHHHHH
Q 024893 163 VNKATSRKLEHDHSNDAKSLV 183 (261)
Q Consensus 163 ~~kkk~~~lee~n~~L~~~l~ 183 (261)
.++++.+.|+|||+.|..++.
T Consensus 76 rlkkk~~~LeEENNlLklKie 96 (108)
T cd07429 76 RLKKKNQQLEEENNLLKLKIE 96 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456678889999999887764
No 20
>PF14282 FlxA: FlxA-like protein
Probab=47.18 E-value=1.3e+02 Score=23.08 Aligned_cols=56 Identities=9% Similarity=0.255 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHhchhcccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024893 98 ESKMRQVDDAATRACKKICVGDFTTWDQGMDSLSEDQLKMILSTMDDKLKDVDRKLNTIKRD 159 (261)
Q Consensus 98 ~~~~~kLk~el~kl~ke~~~l~~~~~gedL~~Ls~eEL~~LE~~LE~~L~~Vr~Rk~~L~~~ 159 (261)
...++.|+..+..|++++..+. .+ .+++.++-..-...|..-+..+...+..+...
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~-----~~-~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q 73 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELS-----QD-SDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQ 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----cc-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777766543 22 56789988888888888888888887776544
No 21
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=45.09 E-value=2e+02 Score=26.58 Aligned_cols=33 Identities=9% Similarity=0.259 Sum_probs=24.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024893 124 DQGMDSLSEDQLKMILSTMDDKLKDVDRKLNTI 156 (261)
Q Consensus 124 gedL~~Ls~eEL~~LE~~LE~~L~~Vr~Rk~~L 156 (261)
-++++.++.++|..+...|......+..+...+
T Consensus 195 ~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l 227 (312)
T smart00787 195 EDELEDCDPTELDRAKEKLKKLLQEIMIKVKKL 227 (312)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788999999999888887777766554443
No 22
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=44.75 E-value=1.4e+02 Score=23.33 Aligned_cols=48 Identities=15% Similarity=0.098 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHHHHhh
Q 024893 133 DQLKMILSTMDDKLKDVDRKLNTIKRDQNVVNKATSRKLEHDHSNDAKSLVNL 185 (261)
Q Consensus 133 eEL~~LE~~LE~~L~~Vr~Rk~~L~~~q~~~~kkk~~~lee~n~~L~~~l~~~ 185 (261)
+.|.+|+++|...+..+.+=+.. +..+-+....|.-+|..|+..+...
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~-----~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQ-----LAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666666666665443333 3344555677788888888777753
No 23
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=43.06 E-value=23 Score=27.02 Aligned_cols=78 Identities=8% Similarity=0.132 Sum_probs=44.6
Q ss_pred hhhhhcccCcceeee-------eecCCCCCCCCCCccccCCcchHHHHHHHHHhhhcccccCCccccccchhHHHHHHHH
Q 024893 32 AYEFTTLCDVEVCII-------IYGPKVKGHSLKPETWTSKEGELTSIIRKYEKKISAVDHGQHRTLSLSKFDESKMRQV 104 (261)
Q Consensus 32 A~ELSvLCdaeValI-------IfS~~Gkl~~~~p~~~ps~s~sv~~IleRY~~~~~~~d~~~~k~~~l~~~~~~~~~kL 104 (261)
..|||..|+++...| ++.|.+. .|..|-+.. ..-.++.+...+..+.+.+. ....+.--+-++++.|
T Consensus 10 ~~Elc~~~gi~~~~l~eLve~GlIep~~~----~~~~~~F~~-~~l~r~~~a~rL~~dl~in~-~gialvl~LLd~i~~L 83 (101)
T PRK10265 10 ITEFCLHTGVSEEELNEIVGLGVIEPREI----QETTWVFDD-HAAIVVQRAVRLRHELALDW-PGIAVALTLLDEIAHL 83 (101)
T ss_pred HHHHHHHHCcCHHHHHHHHHCCCeecCCC----CcccceECH-HHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHH
Confidence 468999999987765 3445443 234465543 35667777777766433311 1111222245667777
Q ss_pred HHHHHHhchhc
Q 024893 105 DDAATRACKKI 115 (261)
Q Consensus 105 k~el~kl~ke~ 115 (261)
+.++..+++.+
T Consensus 84 r~el~~L~~~l 94 (101)
T PRK10265 84 KQENRLLRQRL 94 (101)
T ss_pred HHHHHHHHHHH
Confidence 77777776644
No 24
>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]
Probab=42.37 E-value=63 Score=26.53 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=31.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024893 124 DQGMDSLSEDQLKMILSTMDDKLKDVDRKLNTIKRD 159 (261)
Q Consensus 124 gedL~~Ls~eEL~~LE~~LE~~L~~Vr~Rk~~L~~~ 159 (261)
+-||..||+++|.+|.+++|.-|.-+..-+..|..-
T Consensus 7 ~idltkLsleQL~~lk~q~dqEl~~lq~Sl~~L~~a 42 (153)
T KOG3048|consen 7 GIDLTKLSLEQLGALKKQFDQELNFLQDSLNALKGA 42 (153)
T ss_pred CCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999998888887654
No 25
>PLN02372 violaxanthin de-epoxidase
Probab=42.09 E-value=2.7e+02 Score=26.91 Aligned_cols=11 Identities=9% Similarity=0.157 Sum_probs=7.5
Q ss_pred eeeeeecCCCC
Q 024893 43 VCIIIYGPKVK 53 (261)
Q Consensus 43 ValIIfS~~Gk 53 (261)
-+.|||.++|.
T Consensus 316 gGAVvyTrs~~ 326 (455)
T PLN02372 316 GGAVVYTRSST 326 (455)
T ss_pred cceEEEecCCC
Confidence 45677777776
No 26
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=41.11 E-value=2.8e+02 Score=25.49 Aligned_cols=31 Identities=10% Similarity=0.368 Sum_probs=22.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 024893 125 QGMDSLSEDQLKMILSTMDDKLKDVDRKLNT 155 (261)
Q Consensus 125 edL~~Ls~eEL~~LE~~LE~~L~~Vr~Rk~~ 155 (261)
..++.++.++|..+...|...-..|..++..
T Consensus 201 ~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~ 231 (325)
T PF08317_consen 201 EEIESCDQEELEALRQELAEQKEEIEAKKKE 231 (325)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999988887766666544433
No 27
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=38.51 E-value=28 Score=29.95 Aligned_cols=30 Identities=7% Similarity=0.326 Sum_probs=24.3
Q ss_pred cCcceeeeeecCCCCCCCCCCccccCCcchHHHHHHHHHhhhc
Q 024893 39 CDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEKKIS 81 (261)
Q Consensus 39 CdaeValIIfS~~Gkl~~~~p~~~ps~s~sv~~IleRY~~~~~ 81 (261)
-||++||+|||.+.+ | +.+.+++=|.+...
T Consensus 91 rgaqa~vLVFSTTDr--------~-----SFea~~~w~~kv~~ 120 (246)
T KOG4252|consen 91 RGAQASVLVFSTTDR--------Y-----SFEATLEWYNKVQK 120 (246)
T ss_pred ccccceEEEEecccH--------H-----HHHHHHHHHHHHHH
Confidence 589999999999976 3 46778888887755
No 28
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=38.37 E-value=81 Score=24.41 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024893 129 SLSEDQLKMILSTMDDKLKDVDRKLNTIK 157 (261)
Q Consensus 129 ~Ls~eEL~~LE~~LE~~L~~Vr~Rk~~L~ 157 (261)
+.+.+++..|-..++..|+.+|.|+....
T Consensus 33 ~~a~~e~~~lR~r~~~~Lk~~r~rl~~~~ 61 (104)
T COG4575 33 SLAGDEAEELRSKAESALKEARDRLGDTG 61 (104)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 77889999999999999999999988664
No 29
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.70 E-value=1.5e+02 Score=21.27 Aligned_cols=41 Identities=7% Similarity=0.130 Sum_probs=21.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhh
Q 024893 131 SEDQLKMILSTMDDKLKDVDRKLNTIKRDQNVVNKATSRKLEHDHS 176 (261)
Q Consensus 131 s~eEL~~LE~~LE~~L~~Vr~Rk~~L~~~q~~~~kkk~~~lee~n~ 176 (261)
|++=|..||..+..++..| . |..-+++.+|.|...|..+-+
T Consensus 2 SlEv~ekLE~KiqqAvdTI----~-LLQmEieELKEknn~l~~e~q 42 (79)
T COG3074 2 SLEVFEKLEAKVQQAIDTI----T-LLQMEIEELKEKNNSLSQEVQ 42 (79)
T ss_pred chHHHHHHHHHHHHHHHHH----H-HHHHHHHHHHHHhhHhHHHHH
Confidence 4555666665555555443 2 233346666666655544333
No 30
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=37.41 E-value=1.3e+02 Score=24.81 Aligned_cols=54 Identities=7% Similarity=0.106 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHhchhcccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 024893 97 DESKMRQVDDAATRACKKICVGDFTTWDQGMDSLSEDQLKMILSTMDDKLKDVDRKLNT 155 (261)
Q Consensus 97 ~~~~~~kLk~el~kl~ke~~~l~~~~~gedL~~Ls~eEL~~LE~~LE~~L~~Vr~Rk~~ 155 (261)
+...+..|+.++..+...+..+. + +-..++.++...++.......+..+.|+..
T Consensus 114 l~~~i~~l~~e~~~l~~kL~~l~----~-~~~~vs~ee~~~~~~~~~~~~k~w~kRKri 167 (169)
T PF07106_consen 114 LREEIEELEEEIEELEEKLEKLR----S-GSKPVSPEEKEKLEKEYKKWRKEWKKRKRI 167 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----h-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666655554433 2 334478888888888888888887777653
No 31
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=35.77 E-value=3.1e+02 Score=24.38 Aligned_cols=99 Identities=11% Similarity=0.196 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHHHHhhCcccccccCCCCCcchhhhcCCCCCCCC
Q 024893 134 QLKMILSTMDDKLKDVDRKLNTIKRDQNVVNKATSRKLEHDHSNDAKSLVNLQPAYQVSQKLPSDSSFMEIQCGGGSGST 213 (261)
Q Consensus 134 EL~~LE~~LE~~L~~Vr~Rk~~L~~~q~~~~kkk~~~lee~n~~L~~~l~~~~~~~q~q~~~~~~~~~~~~~~g~~s~s~ 213 (261)
.+..++..+......+...+..+.........++....++.++.|...++..-...+|...+|-. + .-+|| ...-
T Consensus 132 ~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~~ell~~yeri~~~~kg~gvvpl~--g--~~C~G-C~m~ 206 (239)
T COG1579 132 RLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLDPELLSEYERIRKNKKGVGVVPLE--G--RVCGG-CHMK 206 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCceEEeec--C--CcccC-Ceee
Confidence 34444444444444444443333332233333444444667777776655543222221111111 0 12444 6777
Q ss_pred ccccccCcccccCCCcccCCCCCcc
Q 024893 214 IPFTPLQGQINWNSSLTMSPTSSGI 238 (261)
Q Consensus 214 ~p~~~~~~~~~~~~~~~~~~~~~~~ 238 (261)
||...+..=.+ ..++-.-|-.+-|
T Consensus 207 l~~~~~~~V~~-~d~iv~CP~CgRI 230 (239)
T COG1579 207 LPSQTLSKVRK-KDEIVFCPYCGRI 230 (239)
T ss_pred ecHHHHHHHhc-CCCCccCCccchH
Confidence 88777777777 5555566655543
No 32
>PRK00708 sec-independent translocase; Provisional
Probab=35.75 E-value=51 Score=28.74 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=18.4
Q ss_pred eeeeeecCCCCCCCCCCccccCCcchHHHHHHHHHhhhc
Q 024893 43 VCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEKKIS 81 (261)
Q Consensus 43 ValIIfS~~Gkl~~~~p~~~ps~s~sv~~IleRY~~~~~ 81 (261)
|+||||+|.. +|.--..+-..+.+++....
T Consensus 15 VaLvV~GPkr---------LP~~~R~lGk~v~k~R~~a~ 44 (209)
T PRK00708 15 VLIVVVGPKD---------LPPMLRAFGKMTARMRKMAG 44 (209)
T ss_pred HHHhhcCchH---------HHHHHHHHHHHHHHHHHHHH
Confidence 6889999964 44322355666666665543
No 33
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=35.29 E-value=3.2e+02 Score=26.53 Aligned_cols=31 Identities=13% Similarity=0.169 Sum_probs=23.3
Q ss_pred ceeeeeecCCCCCCCCCCccccCCcchHHHHHHHHHhhhc
Q 024893 42 EVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEKKIS 81 (261)
Q Consensus 42 eValIIfS~~Gkl~~~~p~~~ps~s~sv~~IleRY~~~~~ 81 (261)
-+-+++|.++|++ ..| .++.+||+.|-.+--
T Consensus 298 ~~Nm~~~d~~g~~-----~~~----~~~~~Il~~f~~~R~ 328 (439)
T PHA02592 298 SQNITVINENGKL-----KVY----ENAEDLIRDFVEIRK 328 (439)
T ss_pred eeeEEEEecCCee-----eec----CCHHHHHHHHHHHHH
Confidence 3678999999974 446 259999999977644
No 34
>PLN03194 putative disease resistance protein; Provisional
Probab=34.46 E-value=35 Score=29.21 Aligned_cols=14 Identities=14% Similarity=0.541 Sum_probs=11.8
Q ss_pred cCcceeeeeecCCC
Q 024893 39 CDVEVCIIIYGPKV 52 (261)
Q Consensus 39 CdaeValIIfS~~G 52 (261)
=.+.++|||||++=
T Consensus 79 eeSri~IvVfS~~Y 92 (187)
T PLN03194 79 RNCKVGVAVFSPRY 92 (187)
T ss_pred HhCeEEEEEECCCc
Confidence 46789999999974
No 35
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=33.15 E-value=3.5e+02 Score=27.11 Aligned_cols=37 Identities=14% Similarity=0.015 Sum_probs=21.1
Q ss_pred hhhhhhcccCcceeeeeecCCCCCCC-CCCccccCCcc
Q 024893 31 KAYEFTTLCDVEVCIIIYGPKVKGHS-LKPETWTSKEG 67 (261)
Q Consensus 31 KA~ELSvLCdaeValIIfS~~Gkl~~-~~p~~~ps~s~ 67 (261)
+|+.|----|-.-.+..++..|.+.. ..|+.|+.+.+
T Consensus 78 ~ayyLPk~~~e~YqfcYv~~~g~V~G~S~pFqf~~~~p 115 (546)
T PF07888_consen 78 QAYYLPKDDDEFYQFCYVDQKGEVRGASTPFQFRAPKP 115 (546)
T ss_pred CcccCCCCCCCeEEEEEECCCccEEEecCCcccCCCCc
Confidence 57777765444444444455554433 56877876653
No 36
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=32.86 E-value=45 Score=24.39 Aligned_cols=74 Identities=16% Similarity=0.212 Sum_probs=38.2
Q ss_pred hhhhhcccCcceeee-------eecCCCCCCCCCCccccCCcchHHHHHHHHHhhhcccccCCccccccchhHHHHHHHH
Q 024893 32 AYEFTTLCDVEVCII-------IYGPKVKGHSLKPETWTSKEGELTSIIRKYEKKISAVDHGQHRTLSLSKFDESKMRQV 104 (261)
Q Consensus 32 A~ELSvLCdaeValI-------IfS~~Gkl~~~~p~~~ps~s~sv~~IleRY~~~~~~~d~~~~k~~~l~~~~~~~~~kL 104 (261)
..|||..|+++...| +..|.+.. ..|.++. ..-.-+.|+.....+.+.+ .....+--.+-+++..|
T Consensus 3 ~~e~~~~~~i~~~~l~~lve~Gli~p~~~~-----~~~~f~~-~~l~rl~~~~rL~~Dl~in-~~gi~lil~LLd~i~~L 75 (84)
T PF13591_consen 3 LEEFCEACGIEPEFLRELVEEGLIEPEGEE-----EEWYFSE-EDLARLRRIRRLHRDLGIN-LEGIALILDLLDRIEQL 75 (84)
T ss_pred HHHHHHHHCcCHHHHHHHHHCCCeeecCCC-----CeeeECH-HHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHH
Confidence 468999999887765 23333321 1244443 3445567777776643331 11111222234556666
Q ss_pred HHHHHHhc
Q 024893 105 DDAATRAC 112 (261)
Q Consensus 105 k~el~kl~ 112 (261)
+.++..|+
T Consensus 76 ~~el~~L~ 83 (84)
T PF13591_consen 76 RRELRELR 83 (84)
T ss_pred HHHHHHhh
Confidence 66665554
No 37
>PRK10132 hypothetical protein; Provisional
Probab=32.40 E-value=1e+02 Score=23.96 Aligned_cols=56 Identities=5% Similarity=0.075 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHhchhcccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024893 97 DESKMRQVDDAATRACKKICVGDFTTWDQGMDSLSEDQLKMILSTMDDKLKDVDRKLNTIK 157 (261)
Q Consensus 97 ~~~~~~kLk~el~kl~ke~~~l~~~~~gedL~~Ls~eEL~~LE~~LE~~L~~Vr~Rk~~L~ 157 (261)
++.+.+.|..++..|-.....+. .+..+-+-+++..+-..++..|+..|+++....
T Consensus 10 ~~~q~e~L~~Dl~~L~~~le~ll-----~~~~~~~~~~~~~lR~r~~~~L~~ar~~l~~~~ 65 (108)
T PRK10132 10 VDDGVQDIQNDVNQLADSLESVL-----KSWGSDAKGEAEAARRKAQALLKETRARMHGRT 65 (108)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH-----HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 34455666666666655544433 233356678889999999999999998877543
No 38
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=31.56 E-value=4.1e+02 Score=24.32 Aligned_cols=32 Identities=25% Similarity=0.102 Sum_probs=25.1
Q ss_pred HHhhHHHHHHHhhhhhhhhhhhHHHHHhhCcc
Q 024893 157 KRDQNVVNKATSRKLEHDHSNDAKSLVNLQPA 188 (261)
Q Consensus 157 ~~~q~~~~kkk~~~lee~n~~L~~~l~~~~~~ 188 (261)
...|+...++....|+.+.+.+...|+..+.+
T Consensus 100 lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~ 131 (307)
T PF10481_consen 100 LEGQLNSCKKQIEKLEQELKRCKSELERSQQA 131 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567777888888888999999888887654
No 39
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=30.00 E-value=21 Score=37.41 Aligned_cols=31 Identities=39% Similarity=0.467 Sum_probs=22.8
Q ss_pred CCCCccccccCcccccCCCcccCCCCCccccChhhhh
Q 024893 210 SGSTIPFTPLQGQINWNSSLTMSPTSSGIYDGSAAQA 246 (261)
Q Consensus 210 s~s~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (261)
+.--|++++ .| .-.++||.++++|||+|.-|
T Consensus 623 ~~~~is~~~-~g-----~~~~lsp~g~dlydG~~GI~ 653 (963)
T COG4403 623 SLIWISTTF-EG-----QGWSLSPLGNDLYDGSAGIA 653 (963)
T ss_pred eEEEEEeee-cc-----ceEEeecCCchhhcCcchHH
Confidence 344567776 55 44678999999999998543
No 40
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=29.66 E-value=72 Score=31.08 Aligned_cols=27 Identities=22% Similarity=0.167 Sum_probs=21.2
Q ss_pred hHHHHHHHhhhhhhhhhhhHHHHHhhC
Q 024893 160 QNVVNKATSRKLEHDHSNDAKSLVNLQ 186 (261)
Q Consensus 160 q~~~~kkk~~~lee~n~~L~~~l~~~~ 186 (261)
|...|++|...|+..|..|...|...|
T Consensus 287 eNqeL~kkV~~Le~~N~sLl~qL~klQ 313 (472)
T KOG0709|consen 287 ENQELQKKVEELELSNRSLLAQLKKLQ 313 (472)
T ss_pred CcHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 445688899999999999987776654
No 41
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=29.31 E-value=5.6e+02 Score=25.22 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=13.6
Q ss_pred HHHHHHhhhhhhhhhhhHHHHH
Q 024893 162 VVNKATSRKLEHDHSNDAKSLV 183 (261)
Q Consensus 162 ~~~kkk~~~lee~n~~L~~~l~ 183 (261)
..+.++.+.++.++..|...+.
T Consensus 100 ~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 100 GDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666777777766653
No 42
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=29.20 E-value=3.1e+02 Score=22.92 Aligned_cols=45 Identities=9% Similarity=0.038 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHhhhhhhhh
Q 024893 131 SEDQLKMILSTMDDKLKDVDRKL---NTIKRDQNVVNKATSRKLEHDH 175 (261)
Q Consensus 131 s~eEL~~LE~~LE~~L~~Vr~Rk---~~L~~~q~~~~kkk~~~lee~n 175 (261)
+..+|..|.++++.+-..++++- -..+.+|+..|++.-+.+.++-
T Consensus 28 ~~~dlv~la~~iq~Ad~~~~~~t~~kL~~I~eQi~~Lq~QA~~ile~~ 75 (159)
T PF10504_consen 28 DPFDLVDLAQQIQKADSAMRANTCNKLEVIAEQIRFLQEQARKILEEA 75 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999998888772 2357788888888766665543
No 43
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=28.75 E-value=96 Score=21.48 Aligned_cols=22 Identities=14% Similarity=0.122 Sum_probs=16.4
Q ss_pred hhHHHHHHHhhhhhhhhhhhHH
Q 024893 159 DQNVVNKATSRKLEHDHSNDAK 180 (261)
Q Consensus 159 ~q~~~~kkk~~~lee~n~~L~~ 180 (261)
++|..+..+...|+.+|..|..
T Consensus 21 ~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 21 EQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4466777778888888888775
No 44
>PRK10404 hypothetical protein; Provisional
Probab=27.33 E-value=2.3e+02 Score=21.64 Aligned_cols=30 Identities=10% Similarity=0.275 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024893 129 SLSEDQLKMILSTMDDKLKDVDRKLNTIKR 158 (261)
Q Consensus 129 ~Ls~eEL~~LE~~LE~~L~~Vr~Rk~~L~~ 158 (261)
+.+-+++..|-..++..|+..|+++.....
T Consensus 30 ~~a~e~~~~lR~r~~~~L~~ar~~l~~~~~ 59 (101)
T PRK10404 30 DPADQKYVELKARAEKALDDVKKRVSQASD 59 (101)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 447889999999999999999998876543
No 45
>PRK04654 sec-independent translocase; Provisional
Probab=26.37 E-value=1.2e+02 Score=26.60 Aligned_cols=10 Identities=30% Similarity=0.876 Sum_probs=8.1
Q ss_pred eeeeeecCCC
Q 024893 43 VCIIIYGPKV 52 (261)
Q Consensus 43 ValIIfS~~G 52 (261)
|+||||+|..
T Consensus 15 VALlV~GPer 24 (214)
T PRK04654 15 VALVVLGPER 24 (214)
T ss_pred HHHHhcCchH
Confidence 6889999964
No 46
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=26.36 E-value=4e+02 Score=22.56 Aligned_cols=12 Identities=8% Similarity=0.188 Sum_probs=6.1
Q ss_pred HHHHHHHHHhhh
Q 024893 69 LTSIIRKYEKKI 80 (261)
Q Consensus 69 v~~IleRY~~~~ 80 (261)
...++++|....
T Consensus 93 ~~~~l~~y~~l~ 104 (189)
T PF10211_consen 93 YRMTLDAYQTLY 104 (189)
T ss_pred HHHHHHHHHHHH
Confidence 445555555443
No 47
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=25.74 E-value=5e+02 Score=26.07 Aligned_cols=73 Identities=10% Similarity=0.070 Sum_probs=38.3
Q ss_pred hhhcccCcceeeeeecCCCCCCCCCCccccCCcchHHHHHHHHHhhhcccccCCccccccchhHHHHHHHHHHHHHHhch
Q 024893 34 EFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEKKISAVDHGQHRTLSLSKFDESKMRQVDDAATRACK 113 (261)
Q Consensus 34 ELSvLCdaeValIIfS~~Gkl~~~~p~~~ps~s~sv~~IleRY~~~~~~~d~~~~k~~~l~~~~~~~~~kLk~el~kl~k 113 (261)
=+.++|+-..|-+.|+..-..|...|.++. ..|+++|--+..... .|....+ +.-+...+++|..|.++++.
T Consensus 403 i~~t~v~~~la~~~~st~~~~~~~d~~~~~---~km~~~i~~~~~~~~-sd~~~~r----er~l~a~t~kL~~E~e~~q~ 474 (588)
T KOG3612|consen 403 IKLTQVSKMLADLHYSTQLGGVHADPTVVE---DKMKDAIIDLQESTL-SDYSGSR----ERSLVAATEKLRQEFEELQQ 474 (588)
T ss_pred hhhcccchhhhhcccccccCCcccchHHHH---HHHHHHHHHHHHHHH-HHhhcCC----ccchHHHHHHHHHHHHHHHH
Confidence 345677777787777776655554444442 246666655554433 1211111 12234456677766666654
Q ss_pred h
Q 024893 114 K 114 (261)
Q Consensus 114 e 114 (261)
.
T Consensus 475 ~ 475 (588)
T KOG3612|consen 475 T 475 (588)
T ss_pred H
Confidence 3
No 48
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=25.56 E-value=3.2e+02 Score=21.11 Aligned_cols=48 Identities=13% Similarity=0.164 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHHHHhh
Q 024893 133 DQLKMILSTMDDKLKDVDRKLNTIKRDQNVVNKATSRKLEHDHSNDAKSLVNL 185 (261)
Q Consensus 133 eEL~~LE~~LE~~L~~Vr~Rk~~L~~~q~~~~kkk~~~lee~n~~L~~~l~~~ 185 (261)
+.|.+|+++|...+..|.+=+.. +..+-.....|.-+|..|+..+...
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~-----~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQ-----LQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555544433222 3344455566777788877776654
No 49
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=24.26 E-value=2.5e+02 Score=25.98 Aligned_cols=90 Identities=12% Similarity=0.142 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHHHHHHhchhcccccc----------cccCCCCCCCCH--HHHHHHHHHHHHHHHHHHHH---HHHHHHh
Q 024893 95 KFDESKMRQVDDAATRACKKICVGDF----------TTWDQGMDSLSE--DQLKMILSTMDDKLKDVDRK---LNTIKRD 159 (261)
Q Consensus 95 ~~~~~~~~kLk~el~kl~ke~~~l~~----------~~~gedL~~Ls~--eEL~~LE~~LE~~L~~Vr~R---k~~L~~~ 159 (261)
+.++.+++.|++++..|+.+..++.. .+.-+.+..|+. .++..|...|.......... +..| ..
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~L-ls 241 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSL-LS 241 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 56777888888888888776544330 011111111111 22333334443333332222 3333 23
Q ss_pred hHHHHHHHhhhhhhhhhhhHHHHHhh
Q 024893 160 QNVVNKATSRKLEHDHSNDAKSLVNL 185 (261)
Q Consensus 160 q~~~~kkk~~~lee~n~~L~~~l~~~ 185 (261)
|+..++++.+.+--+|-.|...|...
T Consensus 242 qivdlQ~r~k~~~~EnEeL~q~L~~s 267 (306)
T PF04849_consen 242 QIVDLQQRCKQLAAENEELQQHLQAS 267 (306)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 56777888888777777766555443
No 50
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=23.91 E-value=3.6e+02 Score=21.22 Aligned_cols=27 Identities=7% Similarity=-0.034 Sum_probs=21.3
Q ss_pred HhhHHHHHHHhhhhhhhhhhhHHHHHh
Q 024893 158 RDQNVVNKATSRKLEHDHSNDAKSLVN 184 (261)
Q Consensus 158 ~~q~~~~kkk~~~lee~n~~L~~~l~~ 184 (261)
..++..++++...|.+.|+.|...|..
T Consensus 104 e~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 104 EKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345778888899999999998876653
No 51
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=23.80 E-value=3.5e+02 Score=24.52 Aligned_cols=61 Identities=13% Similarity=0.101 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHHHhchhcccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024893 96 FDESKMRQVDDAATRACKKICVGDFTTWDQGMDSLSEDQLKMILSTMDDKLKDVDRKLNTIK 157 (261)
Q Consensus 96 ~~~~~~~kLk~el~kl~ke~~~l~~~~~gedL~~Ls~eEL~~LE~~LE~~L~~Vr~Rk~~L~ 157 (261)
.+..+.+.|.+++..-+++.-... ....+=|..+.-++|+.+...|+..|..+.++-..|.
T Consensus 56 ll~~~~k~L~aE~~qwqk~~peii-~~n~~VL~~lgkeelqkl~~eLe~vLs~~q~KnekLk 116 (268)
T PF11802_consen 56 LLMMRVKCLTAELEQWQKRTPEII-PLNPEVLLTLGKEELQKLISELEMVLSTVQSKNEKLK 116 (268)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556678888888877654433 1111223466678999999999999998888766554
No 52
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=23.53 E-value=3.8e+02 Score=21.26 Aligned_cols=59 Identities=12% Similarity=0.031 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHHHHHhchhcccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 024893 95 KFDESKMRQVDDAATRACKKICVGDFTTWDQGMDSLSEDQLKMILSTMDDKLKDVDRKL 153 (261)
Q Consensus 95 ~~~~~~~~kLk~el~kl~ke~~~l~~~~~gedL~~Ls~eEL~~LE~~LE~~L~~Vr~Rk 153 (261)
+.+..++.+|+-|+..|++.+++-.-+.-..+-..|+..+-..+..+.-..|...-.++
T Consensus 6 EeLaaeL~kLqmENk~LKkkl~~~~~p~~~p~~~~LTp~qKe~~I~s~~~~Lss~A~~K 64 (118)
T PF05812_consen 6 EELAAELQKLQMENKALKKKLRQSVGPGPSPDDEVLTPAQKEAMITSAVSKLSSQASKK 64 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT---S-TT--B--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888887765431101155568899998888888888776654443
No 53
>PF10491 Nrf1_DNA-bind: NLS-binding and DNA-binding and dimerisation domains of Nrf1; InterPro: IPR019525 Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates. The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila []. In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human []. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Q8C4C0 from SWISSPROT, there is also an NLS domain at 88-116, and a DNA binding and dimerisation domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity [].
Probab=23.50 E-value=1.3e+02 Score=26.26 Aligned_cols=44 Identities=14% Similarity=0.227 Sum_probs=34.1
Q ss_pred hhhhhcccCcceeeeeecCCCCCCCCCCccccCCcchHHHHHHHHHhh
Q 024893 32 AYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEKK 79 (261)
Q Consensus 32 A~ELSvLCdaeValIIfS~~Gkl~~~~p~~~ps~s~sv~~IleRY~~~ 79 (261)
..|++|-||-++.|++.+|+.-. ....+|.. ..++.|+..|+..
T Consensus 45 ~de~~trvGqqavvl~~~p~kp~--~~f~vfGa--~pL~~vv~~~~~~ 88 (214)
T PF10491_consen 45 IDEYTTRVGQQAVVLCCTPSKPN--PVFKVFGA--APLENVVRNLKPV 88 (214)
T ss_pred HHHHHHhhhceeEEEEecCCCCC--Cceeeecc--hhHHHHHHHHHHH
Confidence 57999999999999999997422 23345754 4599999999875
No 54
>PRK10884 SH3 domain-containing protein; Provisional
Probab=23.31 E-value=4.2e+02 Score=22.93 Aligned_cols=51 Identities=8% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHHHHh
Q 024893 133 DQLKMILSTMDDKLKDVDRKLNTIKRDQNVVNKATSRKLEHDHSNDAKSLVN 184 (261)
Q Consensus 133 eEL~~LE~~LE~~L~~Vr~Rk~~L~~~q~~~~kkk~~~lee~n~~L~~~l~~ 184 (261)
.||..+...|...-.....+...+... +.........|+++|..|..++..
T Consensus 100 ~el~~l~~~l~~~~~~~~~~~~~l~~~-~~~~~~~~~~L~~~n~~L~~~l~~ 150 (206)
T PRK10884 100 NQVKTLTDKLNNIDNTWNQRTAEMQQK-VAQSDSVINGLKEENQKLKNQLIV 150 (206)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
No 55
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=23.20 E-value=3e+02 Score=28.28 Aligned_cols=52 Identities=15% Similarity=0.240 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHhhhhhhhhhhhHHHHHh
Q 024893 133 DQLKMILSTMDDKLKDVDRKLNTIK---RDQNVVNKATSRKLEHDHSNDAKSLVN 184 (261)
Q Consensus 133 eEL~~LE~~LE~~L~~Vr~Rk~~L~---~~q~~~~kkk~~~lee~n~~L~~~l~~ 184 (261)
++|..|+++-+.-+...+.+.+.++ .+|++.+|.-.+.||++.++|..+...
T Consensus 4 dkL~~Lq~ek~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~ 58 (654)
T PF09798_consen 4 DKLELLQQEKQKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRS 58 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777766654 346778888899999999999865443
No 56
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=22.63 E-value=92 Score=27.89 Aligned_cols=25 Identities=20% Similarity=0.213 Sum_probs=19.2
Q ss_pred hhhhhhhhcccCcceeeeeecCCCCC
Q 024893 29 MKKAYEFTTLCDVEVCIIIYGPKVKG 54 (261)
Q Consensus 29 ~KKA~ELSvLCdaeValIIfS~~Gkl 54 (261)
|||+-. ++--|.|+-+||.|..||.
T Consensus 54 ~~~cf~-~l~~dpdcr~iilsg~GKh 78 (292)
T KOG1681|consen 54 FKECFD-SLDRDPDCRAIILSGAGKH 78 (292)
T ss_pred HHHHHH-hhccCCCceEEEEecCCcc
Confidence 555543 3446889999999999998
No 57
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=22.51 E-value=43 Score=29.40 Aligned_cols=16 Identities=6% Similarity=0.252 Sum_probs=13.5
Q ss_pred cceeeeeecCCCCCCC
Q 024893 41 VEVCIIIYGPKVKGHS 56 (261)
Q Consensus 41 aeValIIfS~~Gkl~~ 56 (261)
-|-||-||||+|.+|.
T Consensus 4 ydraltvFSPDGhL~Q 19 (249)
T KOG0183|consen 4 YDRALTVFSPDGHLFQ 19 (249)
T ss_pred cccceEEECCCCCEEe
Confidence 3568899999999975
No 58
>KOG4149 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.50 E-value=37 Score=27.11 Aligned_cols=15 Identities=40% Similarity=0.882 Sum_probs=11.4
Q ss_pred ccccccCcccccCCCc
Q 024893 214 IPFTPLQGQINWNSSL 229 (261)
Q Consensus 214 ~p~~~~~~~~~~~~~~ 229 (261)
-|++| .|+|||+=+-
T Consensus 47 g~~~P-DG~INwdCpC 61 (129)
T KOG4149|consen 47 GPTNP-DGTINWDCPC 61 (129)
T ss_pred CCcCC-CCceeecCcc
Confidence 35777 6999998653
No 59
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=22.48 E-value=6.9e+02 Score=27.34 Aligned_cols=15 Identities=7% Similarity=0.399 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhchhc
Q 024893 101 MRQVDDAATRACKKI 115 (261)
Q Consensus 101 ~~kLk~el~kl~ke~ 115 (261)
+..+++|+++|+..+
T Consensus 366 irElReEve~lr~qL 380 (1714)
T KOG0241|consen 366 IRELREEVEKLREQL 380 (1714)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556777777776544
No 60
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=22.35 E-value=2.4e+02 Score=20.73 Aligned_cols=30 Identities=10% Similarity=0.196 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024893 128 DSLSEDQLKMILSTMDDKLKDVDRKLNTIK 157 (261)
Q Consensus 128 ~~Ls~eEL~~LE~~LE~~L~~Vr~Rk~~L~ 157 (261)
.+.+-+....+-..+...+..++.+.....
T Consensus 22 ~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~ 51 (94)
T PF05957_consen 22 ADLAGEKADEARDRAEEALDDARDRAEDAA 51 (94)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355567777888888888888888876654
No 61
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=22.04 E-value=2.1e+02 Score=26.06 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=26.8
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 024893 123 WDQGMDSLSEDQLKMILSTMDDKLKDVDRKLNT 155 (261)
Q Consensus 123 ~gedL~~Ls~eEL~~LE~~LE~~L~~Vr~Rk~~ 155 (261)
.-+.|.+|+++||.+|-..|-..+..|-+.+..
T Consensus 212 SrEeL~~Mt~~EL~qL~~~L~~qIq~vfeeLt~ 244 (285)
T PF06937_consen 212 SREELNSMTLDELKQLNEKLLQQIQDVFEELTQ 244 (285)
T ss_pred CHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358899999999999998888877777666554
No 62
>PF11944 DUF3461: Protein of unknown function (DUF3461); InterPro: IPR020911 This entry describes proteins of unknown function.
Probab=22.02 E-value=1.1e+02 Score=24.37 Aligned_cols=24 Identities=21% Similarity=0.513 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024893 132 EDQLKMILSTMDDKLKDVDRKLNT 155 (261)
Q Consensus 132 ~eEL~~LE~~LE~~L~~Vr~Rk~~ 155 (261)
+++|..||..+.+++..|+++++.
T Consensus 101 L~dL~HLE~Vv~~KIaEIe~dlek 124 (125)
T PF11944_consen 101 LDDLRHLEKVVNSKIAEIERDLEK 124 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 679999999999999999888764
No 63
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=21.98 E-value=6.6e+02 Score=23.49 Aligned_cols=51 Identities=8% Similarity=0.162 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hhHHHHHHHhhhhhhhhhhhH
Q 024893 129 SLSEDQLKMILSTMDDKLKDVDRKLNTIKR--------------DQNVVNKATSRKLEHDHSNDA 179 (261)
Q Consensus 129 ~Ls~eEL~~LE~~LE~~L~~Vr~Rk~~L~~--------------~q~~~~kkk~~~lee~n~~L~ 179 (261)
-...+||++-....|.+...+..++-.|.. .|++-.++....|++-...|-
T Consensus 172 K~~dEelrqA~eKfEESkE~aE~sM~nlle~d~eqvsqL~~Li~aqLdfhrqs~~iL~~l~~~l~ 236 (366)
T KOG1118|consen 172 KIKDEELRQALEKFEESKELAEDSMFNLLENDVEQVSQLSALIQAQLDFHRQSTQILQELQMKLF 236 (366)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344788999888888888877777655533 344445555555555444444
No 64
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=21.23 E-value=7.6e+02 Score=24.25 Aligned_cols=7 Identities=57% Similarity=0.563 Sum_probs=3.0
Q ss_pred hhhhhhh
Q 024893 244 AQAKKSN 250 (261)
Q Consensus 244 ~~~~~~~ 250 (261)
+--||+|
T Consensus 483 ~~kkk~n 489 (493)
T KOG0804|consen 483 KSKKKSN 489 (493)
T ss_pred cchhhhc
Confidence 3344444
No 65
>PRK09822 lipopolysaccharide core biosynthesis protein; Provisional
Probab=20.97 E-value=57 Score=29.08 Aligned_cols=36 Identities=22% Similarity=0.318 Sum_probs=25.8
Q ss_pred ccccc-cchhhhhhhhhhcccCcc---eeeeeecCCCCCCC
Q 024893 20 TFKKR-KNSLMKKAYEFTTLCDVE---VCIIIYGPKVKGHS 56 (261)
Q Consensus 20 TFsKR-r~GL~KKA~ELSvLCdae---ValIIfS~~Gkl~~ 56 (261)
+|.+| |.|++||.. +..||..+ ||-|.||+.++.+-
T Consensus 118 ~~~~~~~~~~~~~~~-~~~L~~~~~~l~~~v~fS~~~r~IG 157 (269)
T PRK09822 118 SFYRREKGGFLKKIK-FNILKRVHKALLISVPLSKRGRLAG 157 (269)
T ss_pred hhhhhccCchhhhhH-HHHHhhhhhhhEEEeeccccCCcee
Confidence 45444 788888874 78888554 56678999988753
No 66
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=20.94 E-value=41 Score=26.32 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=28.3
Q ss_pred ccccc-ccccc---------hhhhhhhhhhcccCcceeeeeecCCCCC
Q 024893 17 CLATF-KKRKN---------SLMKKAYEFTTLCDVEVCIIIYGPKVKG 54 (261)
Q Consensus 17 RqvTF-sKRr~---------GL~KKA~ELSvLCdaeValIIfS~~Gkl 54 (261)
+.++| |+-|+ |=+-|..|+.+=||.|+-+|+.-+.|..
T Consensus 49 g~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~Dall~~V~q~gg~ 96 (111)
T COG0139 49 GEAHYYSRSRQELWTKGETSGHTQKVVEIRLDCDGDALLLLVEQIGGP 96 (111)
T ss_pred CeEEEEEcchhhheccccccCceEEEEEEEcCCCCCEEEEEEEeCCCC
Confidence 34444 66665 4455678999999999999999996643
No 67
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=20.62 E-value=3.3e+02 Score=23.43 Aligned_cols=47 Identities=9% Similarity=0.200 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhH
Q 024893 132 EDQLKMILSTMDDKLKDVDRKLNTIKRDQNVVNKATSRKLEHDHSNDA 179 (261)
Q Consensus 132 ~eEL~~LE~~LE~~L~~Vr~Rk~~L~~~q~~~~kkk~~~lee~n~~L~ 179 (261)
+++|+.+...||..-..+-++-.++... ...+-.+...|.++|..|.
T Consensus 69 ledLk~~~~~lEE~~~~L~aq~rqlEkE-~q~L~~~i~~Lqeen~kl~ 115 (193)
T PF14662_consen 69 LEDLKTLAKSLEEENRSLLAQARQLEKE-QQSLVAEIETLQEENGKLL 115 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHH
Confidence 4455555555555555444443333322 1233334444444444444
No 68
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=20.47 E-value=2.8e+02 Score=25.40 Aligned_cols=45 Identities=20% Similarity=0.326 Sum_probs=31.3
Q ss_pred eeeeecCCCccccccccccchhhhhhhhhhcccCcceeeeeecCCCCCCCCCCccccCCcchHHHHHHHHHh
Q 024893 7 KLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEK 78 (261)
Q Consensus 7 ~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIIfS~~Gkl~~~~p~~~ps~s~sv~~IleRY~~ 78 (261)
-+..|.|.+.|..+=+ | .||..|.+ |.|. |-. .+.|++|++.|..
T Consensus 25 n~~li~n~tqr~t~~s-R------------~L~Ecel~---~~p~----------Y~n-DpEmK~iid~~n~ 69 (295)
T TIGR01478 25 NVSYIQNNTQMTSTKS-R------------LLAEIQRP---KNPH----------YHN-DPELKEIIDKLNE 69 (295)
T ss_pred ceecccCccccccccc-e------------ehhhhccc---cCCC----------CCC-cHHHHHHHHHHhH
Confidence 3567888887766522 3 47888876 6662 433 4689999999876
No 69
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=20.31 E-value=84 Score=25.37 Aligned_cols=33 Identities=6% Similarity=0.094 Sum_probs=23.7
Q ss_pred CcceeeeeecCCCCCCCCCCccccCCcchHHHHHHHHHhh
Q 024893 40 DVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEKK 79 (261)
Q Consensus 40 daeValIIfS~~Gkl~~~~p~~~ps~s~sv~~IleRY~~~ 79 (261)
...++-||+ ++|++.+ |..+ .++.+|+..|=.+
T Consensus 14 ~~~~vkvv~-~~G~v~~-----~~~p-v~a~evm~~~P~h 46 (181)
T PF14009_consen 14 SAATVKVVH-PDGKVEE-----FKRP-VTAAEVMLENPGH 46 (181)
T ss_pred CCceEEEEc-CCCcEEE-----eCCC-cCHHHHHHHCCCC
Confidence 555566666 7899855 6555 5799999998665
Done!