Query 024893
Match_columns 261
No_of_seqs 237 out of 1391
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 16:16:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024893.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024893hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1egw_A MADS box transcription 100.0 2.7E-36 9.4E-41 219.7 1.5 73 2-81 1-73 (77)
2 3p57_A Myocyte-specific enhanc 100.0 9.1E-36 3.1E-40 222.2 1.8 74 2-82 1-74 (90)
3 1mnm_A Protein (MCM1 transcrip 100.0 3.5E-34 1.2E-38 217.2 -0.1 72 1-79 16-87 (100)
4 1hbx_A SRF, serum response fac 100.0 6.3E-34 2.1E-38 213.1 -2.2 71 1-78 10-80 (92)
5 1k6o_B SRF, serum response fac 100.0 2.5E-33 8.4E-38 213.8 -1.9 70 1-77 9-78 (103)
6 2l5g_B Putative uncharacterize 66.4 12 0.00043 23.1 4.6 38 129-174 1-38 (42)
7 1g6u_A Domain swapped dimer; d 60.9 26 0.00088 21.4 6.5 27 103-143 4-30 (48)
8 1j1d_B Troponin T, TNT; THIN f 57.1 28 0.00097 25.9 6.1 46 126-175 38-83 (106)
9 1ytz_T Troponin T; muscle, THI 57.1 28 0.00094 26.0 6.1 48 125-176 37-84 (107)
10 2jee_A YIIU; FTSZ, septum, coi 54.3 55 0.0019 23.2 7.5 43 130-177 3-45 (81)
11 2w6a_A ARF GTPase-activating p 46.3 62 0.0021 21.5 7.7 52 128-179 8-61 (63)
12 1j1d_C Troponin I, TNI; THIN f 38.7 1.3E+02 0.0046 23.1 10.4 33 125-157 53-85 (133)
13 3nrf_A APAG protein; structura 33.2 7.5 0.00026 29.1 -0.4 40 11-55 21-60 (106)
14 3s9g_A Protein hexim1; cyclin 30.9 1.2E+02 0.004 22.3 5.6 57 125-181 25-87 (104)
15 1a92_A Delta antigen; leucine 29.2 70 0.0024 20.3 3.6 30 150-180 13-42 (50)
16 2khf_A PLNJ; anti-microbial, b 28.6 13 0.00045 19.9 0.2 12 236-247 12-23 (26)
17 1j1e_C Troponin I, TNI; THIN f 27.9 2.4E+02 0.0083 22.8 9.4 33 125-157 53-85 (180)
18 3t98_B Nucleoporin NUP58/NUP45 24.7 2E+02 0.0067 20.7 6.9 63 95-157 8-71 (93)
19 2rpa_A Katanin P60 ATPase-cont 24.3 7.6 0.00026 27.4 -1.7 58 29-112 16-73 (78)
20 3twe_A Alpha4H; unknown functi 23.0 71 0.0024 17.2 2.4 19 98-116 7-25 (27)
21 3hvz_A Uncharacterized protein 22.9 47 0.0016 23.1 2.2 27 44-76 7-33 (78)
22 3he5_A Synzip1; heterodimeric 22.9 1.3E+02 0.0044 18.4 3.9 19 97-115 8-26 (49)
23 2zvv_Y Cyclin-dependent kinase 22.5 19 0.00065 19.6 0.1 12 15-26 15-26 (26)
24 3tso_C RAB11 family-interactin 22.2 1.8E+02 0.0062 20.1 5.1 30 127-156 11-40 (75)
25 3nmd_A CGMP dependent protein 21.3 2.1E+02 0.007 19.7 7.2 52 126-184 14-65 (72)
26 2dfs_A Myosin-5A; myosin-V, in 20.8 3.8E+02 0.013 27.7 9.4 22 163-184 1020-1041(1080)
No 1
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=2.7e-36 Score=219.71 Aligned_cols=73 Identities=32% Similarity=0.555 Sum_probs=68.4
Q ss_pred CcccceeeeecCCCccccccccccchhhhhhhhhhcccCcceeeeeecCCCCCCCCCCccccCCcchHHHHHHHHHhhhc
Q 024893 2 ACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEKKIS 81 (261)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIIfS~~Gkl~~~~p~~~ps~s~sv~~IleRY~~~~~ 81 (261)
||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++|+ |+|+ +|++||+||+..++
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~-----~~s~--~~~~il~ry~~~~~ 73 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQ-----YAST--DMDKVLLKYTEYNE 73 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEE-----EESS--CHHHHHHHHHHC--
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEee-----CCCC--CHHHHHHHHHhccC
Confidence 8999999999999999999999999999999999999999999999999999977 9874 69999999998765
No 2
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=9.1e-36 Score=222.23 Aligned_cols=74 Identities=31% Similarity=0.548 Sum_probs=70.6
Q ss_pred CcccceeeeecCCCccccccccccchhhhhhhhhhcccCcceeeeeecCCCCCCCCCCccccCCcchHHHHHHHHHhhhc
Q 024893 2 ACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEKKIS 81 (261)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIIfS~~Gkl~~~~p~~~ps~s~sv~~IleRY~~~~~ 81 (261)
||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++|+ |||+ +|..||+||+..++
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~-----f~s~--~~~~il~rY~~~~~ 73 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQ-----YAST--DMDKVLLKYTEYNE 73 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEE-----EESS--CHHHHHHHHHHCCS
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEE-----eCCC--CHHHHHHHHHhcCc
Confidence 8999999999999999999999999999999999999999999999999999877 9884 69999999999877
Q ss_pred c
Q 024893 82 A 82 (261)
Q Consensus 82 ~ 82 (261)
.
T Consensus 74 ~ 74 (90)
T 3p57_A 74 P 74 (90)
T ss_dssp C
T ss_pred c
Confidence 3
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=99.97 E-value=3.5e-34 Score=217.18 Aligned_cols=72 Identities=19% Similarity=0.357 Sum_probs=68.1
Q ss_pred CCcccceeeeecCCCccccccccccchhhhhhhhhhcccCcceeeeeecCCCCCCCCCCccccCCcchHHHHHHHHHhh
Q 024893 1 MACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEKK 79 (261)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIIfS~~Gkl~~~~p~~~ps~s~sv~~IleRY~~~ 79 (261)
|||+||+|++|+|+++|+|||+|||.||||||+||||||||+||||||||+|++|+ |+|+ ++..||+||...
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~-----f~sp--s~~~il~r~~G~ 87 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYT-----FSTP--KFEPIVTQQEGR 87 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEE-----EECT--TTTHHHHSHHHH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcce-----ecCC--CHHHHHHHhhCC
Confidence 89999999999999999999999999999999999999999999999999999877 9886 588999998654
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=99.97 E-value=6.3e-34 Score=213.12 Aligned_cols=71 Identities=25% Similarity=0.373 Sum_probs=66.6
Q ss_pred CCcccceeeeecCCCccccccccccchhhhhhhhhhcccCcceeeeeecCCCCCCCCCCccccCCcchHHHHHHHHHh
Q 024893 1 MACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEK 78 (261)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIIfS~~Gkl~~~~p~~~ps~s~sv~~IleRY~~ 78 (261)
|||+||+|++|+|+++|+|||+|||.||||||+||||||||+||||||||+|++|+ |+++ +|..||++|..
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~-----f~s~--~~~~~i~~~~G 80 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYT-----FATR--KLQPMITSETG 80 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEE-----EECG--GGGGGTSSHHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEE-----ecCC--CHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999877 9875 69999987653
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=99.97 E-value=2.5e-33 Score=213.85 Aligned_cols=70 Identities=26% Similarity=0.384 Sum_probs=66.0
Q ss_pred CCcccceeeeecCCCccccccccccchhhhhhhhhhcccCcceeeeeecCCCCCCCCCCccccCCcchHHHHHHHHH
Q 024893 1 MACQALKLEPTKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYE 77 (261)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIIfS~~Gkl~~~~p~~~ps~s~sv~~IleRY~ 77 (261)
|||+||+|++|+|+++|+|||+|||.||||||+||||||||+||||||||+|++|+ |+++ +|..||+++.
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~-----f~s~--~~~~vi~~~~ 78 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYT-----FATR--KLQPMITSET 78 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEE-----EECG--GGGGGTSSHH
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeee-----ecCc--cHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999877 9875 6999998743
No 6
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=66.36 E-value=12 Score=23.10 Aligned_cols=38 Identities=21% Similarity=0.399 Sum_probs=25.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhh
Q 024893 129 SLSEDQLKMILSTMDDKLKDVDRKLNTIKRDQNVVNKATSRKLEHD 174 (261)
Q Consensus 129 ~Ls~eEL~~LE~~LE~~L~~Vr~Rk~~L~~~q~~~~kkk~~~lee~ 174 (261)
++|-+||.+=.+.++.-+..+++++. .++++.+.|++.
T Consensus 1 ~~tk~~l~qkI~kVdrEI~Kte~kI~--------~lqkKlkeLee~ 38 (42)
T 2l5g_B 1 GLSKEELIQNMDRVDREITMVEQQIS--------KLKKKQQQLEEE 38 (42)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHh
Confidence 35666777776777777777766655 556667777664
No 7
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=60.94 E-value=26 Score=21.43 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=18.4
Q ss_pred HHHHHHHHhchhcccccccccCCCCCCCCHHHHHHHHHHHH
Q 024893 103 QVDDAATRACKKICVGDFTTWDQGMDSLSEDQLKMILSTMD 143 (261)
Q Consensus 103 kLk~el~kl~ke~~~l~~~~~gedL~~Ls~eEL~~LE~~LE 143 (261)
.|+.++..++++ +.|++||..||..|.
T Consensus 4 alkselqalkke--------------gfspeelaaleselq 30 (48)
T 1g6u_A 4 ALKSELQALKKE--------------GFSPEELAALESELQ 30 (48)
T ss_dssp HHHHHHHHHHHT--------------TCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--------------CCCHHHHHHHHHHHH
Confidence 355666666653 678999998876553
No 8
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=57.11 E-value=28 Score=25.92 Aligned_cols=46 Identities=15% Similarity=0.197 Sum_probs=33.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhh
Q 024893 126 GMDSLSEDQLKMILSTMDDKLKDVDRKLNTIKRDQNVVNKATSRKLEHDH 175 (261)
Q Consensus 126 dL~~Ls~eEL~~LE~~LE~~L~~Vr~Rk~~L~~~q~~~~kkk~~~lee~n 175 (261)
+|++||.++|+++...|-..+..+.+-+-.|.. ..+++...+.+.|
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE~----kv~kq~yEI~eL~ 83 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEKFDLQE----KFKQQKYEINVLR 83 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHHH----HHHhhhHHHHHHH
Confidence 678999999999999999999888877666643 2334444444443
No 9
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=57.07 E-value=28 Score=26.01 Aligned_cols=48 Identities=17% Similarity=0.139 Sum_probs=35.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhh
Q 024893 125 QGMDSLSEDQLKMILSTMDDKLKDVDRKLNTIKRDQNVVNKATSRKLEHDHS 176 (261)
Q Consensus 125 edL~~Ls~eEL~~LE~~LE~~L~~Vr~Rk~~L~~~q~~~~kkk~~~lee~n~ 176 (261)
-+|++|+.++|+++...|-..+..+.+-+-.|.. ..+++...+.+.|.
T Consensus 37 L~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE~----kv~kq~yEI~eL~~ 84 (107)
T 1ytz_T 37 LNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAE----QIKRKKYEIVTLRN 84 (107)
T ss_dssp CCCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHH----HHHhhhhHHHHHHH
Confidence 3789999999999999999999888877766643 33444444544443
No 10
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=54.29 E-value=55 Score=23.16 Aligned_cols=43 Identities=9% Similarity=0.171 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhh
Q 024893 130 LSEDQLKMILSTMDDKLKDVDRKLNTIKRDQNVVNKATSRKLEHDHSN 177 (261)
Q Consensus 130 Ls~eEL~~LE~~LE~~L~~Vr~Rk~~L~~~q~~~~kkk~~~lee~n~~ 177 (261)
+|.+=|.+||..+...+..|. +...+++.+|.+...|.+++..
T Consensus 3 MS~ElleqLE~KIq~avdtI~-----lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888887653 2233345555555554444333
No 11
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=46.27 E-value=62 Score=21.47 Aligned_cols=52 Identities=10% Similarity=0.070 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHhhhhhhhhhhhH
Q 024893 128 DSLSEDQLKMILSTMDDKLKDVDRK--LNTIKRDQNVVNKATSRKLEHDHSNDA 179 (261)
Q Consensus 128 ~~Ls~eEL~~LE~~LE~~L~~Vr~R--k~~L~~~q~~~~kkk~~~lee~n~~L~ 179 (261)
+.+++.|-.++...|-.+=.+|..- .+.-..+++..++++...|+.+|..|+
T Consensus 8 gpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 8 GAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 3678888888877776665555433 222355677788899999999998876
No 12
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=38.66 E-value=1.3e+02 Score=23.12 Aligned_cols=33 Identities=15% Similarity=0.264 Sum_probs=28.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024893 125 QGMDSLSEDQLKMILSTMDDKLKDVDRKLNTIK 157 (261)
Q Consensus 125 edL~~Ls~eEL~~LE~~LE~~L~~Vr~Rk~~L~ 157 (261)
-+|++||.++|+++...|-..+..+.+-+..+.
T Consensus 53 L~id~ls~~~L~e~~keLh~~I~~LEeEKYDlE 85 (133)
T 1j1d_C 53 LELAGLGFAELQDLARQLHARVDKVDEERYDIE 85 (133)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 469999999999999999999988887766654
No 13
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=33.18 E-value=7.5 Score=29.06 Aligned_cols=40 Identities=13% Similarity=0.178 Sum_probs=32.0
Q ss_pred ecCCCccccccccccchhhhhhhhhhcccCcceeeeeecCCCCCC
Q 024893 11 TKQEKACLATFKKRKNSLMKKAYEFTTLCDVEVCIIIYGPKVKGH 55 (261)
Q Consensus 11 Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIIfS~~Gkl~ 55 (261)
|.++.-...||-=.-.-|-++.=+|+.+| ++.|+|.|+-|
T Consensus 21 ~~~k~~ytktFdV~vaNl~~~~idLsk~C-----~~a~~~~gkef 60 (106)
T 3nrf_A 21 VGDKHFRTQAFKVRLVNAAKSEISLKNSC-----LVAQSAAGQSF 60 (106)
T ss_dssp ETTEEEEEEEEEEEEECCSSSCEECTTCE-----EEEEETTSCEE
T ss_pred eCCeeEEEEEEEEEEecCCCCccccchhh-----heeeCcCCCEE
Confidence 34555566778888888999999999777 99999999864
No 14
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=30.91 E-value=1.2e+02 Score=22.28 Aligned_cols=57 Identities=9% Similarity=0.151 Sum_probs=34.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhHHHHHHHhhhhhhhhhhhHHH
Q 024893 125 QGMDSLSEDQLKMILSTMDDKLKDVDRKLNTIK------RDQNVVNKATSRKLEHDHSNDAKS 181 (261)
Q Consensus 125 edL~~Ls~eEL~~LE~~LE~~L~~Vr~Rk~~L~------~~q~~~~kkk~~~lee~n~~L~~~ 181 (261)
+.|.++|-.||.+=-=.||..+..+.+.-+.+. ..++..+..+...|..+|..|...
T Consensus 25 ErL~~mSKqELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e 87 (104)
T 3s9g_A 25 ESLQNMSKQELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTE 87 (104)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345577777877766666666666532222221 124556666677777788887754
No 15
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=29.15 E-value=70 Score=20.31 Aligned_cols=30 Identities=30% Similarity=0.325 Sum_probs=20.4
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhhhhhhhhHH
Q 024893 150 DRKLNTIKRDQNVVNKATSRKLEHDHSNDAK 180 (261)
Q Consensus 150 r~Rk~~L~~~q~~~~kkk~~~lee~n~~L~~ 180 (261)
|.+.+.|..+ +..-+++.+.|+++|+=|-.
T Consensus 13 Rkk~eeler~-lrk~kk~iKklEdeNPWLGN 42 (50)
T 1a92_A 13 RKKLEELERD-LRKLKKKIKKLEEDNPWLGN 42 (50)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHCTTHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHhhhccCCchhh
Confidence 3334455443 45677888999999998764
No 16
>2khf_A PLNJ; anti-microbial, bacteriocin, peptide, two-peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2khg_A
Probab=28.62 E-value=13 Score=19.94 Aligned_cols=12 Identities=50% Similarity=0.880 Sum_probs=9.3
Q ss_pred CccccChhhhhh
Q 024893 236 SGIYDGSAAQAK 247 (261)
Q Consensus 236 ~~~~~~~~~~~~ 247 (261)
.|.|||.|..|-
T Consensus 12 kgfydgeagrai 23 (26)
T 2khf_A 12 KGFYDGEAGRAI 23 (26)
T ss_dssp HHHTTTHHHHTT
T ss_pred hhcccchhhhHh
Confidence 488999887663
No 17
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=27.87 E-value=2.4e+02 Score=22.81 Aligned_cols=33 Identities=15% Similarity=0.264 Sum_probs=27.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024893 125 QGMDSLSEDQLKMILSTMDDKLKDVDRKLNTIK 157 (261)
Q Consensus 125 edL~~Ls~eEL~~LE~~LE~~L~~Vr~Rk~~L~ 157 (261)
-+|++|+.++|+++...|-..+..+.+-+..+.
T Consensus 53 Lnid~Lse~~L~e~ckELh~~I~~LEeEKYDlE 85 (180)
T 1j1e_C 53 LELAGLGFAELQDLARQLHARVDKVDEERYDIE 85 (180)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 378999999999999999999888877666553
No 18
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=24.75 E-value=2e+02 Score=20.68 Aligned_cols=63 Identities=10% Similarity=0.110 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHHHHHhchhcccccccccC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024893 95 KFDESKMRQVDDAATRACKKICVGDFTTWD-QGMDSLSEDQLKMILSTMDDKLKDVDRKLNTIK 157 (261)
Q Consensus 95 ~~~~~~~~kLk~el~kl~ke~~~l~~~~~g-edL~~Ls~eEL~~LE~~LE~~L~~Vr~Rk~~L~ 157 (261)
+|+.....+.+..+...+..+..+..++.+ ..-..+|+.+|...-+.+-...-.+-+|...+-
T Consensus 8 ~yF~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH 71 (93)
T 3t98_B 8 DYFRVLVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIH 71 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443333222222 112478888888888888877777777766553
No 19
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=24.26 E-value=7.6 Score=27.43 Aligned_cols=58 Identities=16% Similarity=0.242 Sum_probs=38.4
Q ss_pred hhhhhhhhcccCcceeeeeecCCCCCCCCCCccccCCcchHHHHHHHHHhhhcccccCCccccccchhHHHHHHHHHHHH
Q 024893 29 MKKAYEFTTLCDVEVCIIIYGPKVKGHSLKPETWTSKEGELTSIIRKYEKKISAVDHGQHRTLSLSKFDESKMRQVDDAA 108 (261)
Q Consensus 29 ~KKA~ELSvLCdaeValIIfS~~Gkl~~~~p~~~ps~s~sv~~IleRY~~~~~~~d~~~~k~~~l~~~~~~~~~kLk~el 108 (261)
+|+|+|.+.+++=|.|++.|. .+..-|+||.....+.. ...-|.+-.+.+.+|.
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~------------------g~~~qI~k~l~~~~d~~--------~r~kW~~~~~ei~~E~ 69 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQ------------------GVLDQMNKYLYSVKDTH--------LRQKWQQVWQEINVEA 69 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHH------------------HHHHHHHHHHHTCSCHH--------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHH------------------HHHHHHHHHHHhcCCHH--------HHHhHHHHHHHHHHHH
Confidence 689999999999998887654 36667888877654110 0133555556666666
Q ss_pred HHhc
Q 024893 109 TRAC 112 (261)
Q Consensus 109 ~kl~ 112 (261)
+.++
T Consensus 70 ~~Vk 73 (78)
T 2rpa_A 70 KQVK 73 (78)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 20
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=23.00 E-value=71 Score=17.19 Aligned_cols=19 Identities=11% Similarity=0.219 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHhchhcc
Q 024893 98 ESKMRQVDDAATRACKKIC 116 (261)
Q Consensus 98 ~~~~~kLk~el~kl~ke~~ 116 (261)
..+++.|++.+.+++++++
T Consensus 7 ykeledlqerlrklrkklr 25 (27)
T 3twe_A 7 YKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3445556666666666543
No 21
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=22.94 E-value=47 Score=23.07 Aligned_cols=27 Identities=11% Similarity=0.107 Sum_probs=21.0
Q ss_pred eeeeecCCCCCCCCCCccccCCcchHHHHHHHH
Q 024893 44 CIIIYGPKVKGHSLKPETWTSKEGELTSIIRKY 76 (261)
Q Consensus 44 alIIfS~~Gkl~~~~p~~~ps~s~sv~~IleRY 76 (261)
-+.||.|+|..++ +|.++ ++.+++.+.
T Consensus 7 ~i~v~tP~G~~~~-----lp~Ga-T~~D~A~~I 33 (78)
T 3hvz_A 7 EVFVFTPKGDVIS-----LPIGS-TVIDFAYAI 33 (78)
T ss_dssp EEEEECTTSCEEE-----EETTC-BHHHHHHHH
T ss_pred eEEEECCCCCEEE-----ecCCC-CHHHHHHHh
Confidence 3789999998766 99886 688877553
No 22
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=22.87 E-value=1.3e+02 Score=18.37 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHhchhc
Q 024893 97 DESKMRQVDDAATRACKKI 115 (261)
Q Consensus 97 ~~~~~~kLk~el~kl~ke~ 115 (261)
++.+...|..+.+.+++++
T Consensus 8 lenevaslenenetlkkkn 26 (49)
T 3he5_A 8 LENEVASLENENETLKKKN 26 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccHHHHHhc
Confidence 4445556666666666554
No 23
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=22.51 E-value=19 Score=19.59 Aligned_cols=12 Identities=8% Similarity=-0.036 Sum_probs=8.8
Q ss_pred Cccccccccccc
Q 024893 15 KACLATFKKRKN 26 (261)
Q Consensus 15 ~~RqvTFsKRr~ 26 (261)
+.|.+.|.||++
T Consensus 15 sKRRlvf~~rkp 26 (26)
T 2zvv_Y 15 SKRRLIFSXXXX 26 (26)
T ss_pred hhceEEEEeccC
Confidence 567788888864
No 24
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=22.22 E-value=1.8e+02 Score=20.13 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=23.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024893 127 MDSLSEDQLKMILSTMDDKLKDVDRKLNTI 156 (261)
Q Consensus 127 L~~Ls~eEL~~LE~~LE~~L~~Vr~Rk~~L 156 (261)
..++|-+||.++.-.++..|..-..++.+|
T Consensus 11 y~~ltreELi~l~lk~~~~l~~k~~~v~eL 40 (75)
T 3tso_C 11 YRSLTYEEVLQELVKHKELLRRKDTHIREL 40 (75)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999888888877766666555
No 25
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=21.28 E-value=2.1e+02 Score=19.68 Aligned_cols=52 Identities=8% Similarity=0.074 Sum_probs=28.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHHHHh
Q 024893 126 GMDSLSEDQLKMILSTMDDKLKDVDRKLNTIKRDQNVVNKATSRKLEHDHSNDAKSLVN 184 (261)
Q Consensus 126 dL~~Ls~eEL~~LE~~LE~~L~~Vr~Rk~~L~~~q~~~~kkk~~~lee~n~~L~~~l~~ 184 (261)
.+++++. +.+|+..|..+...+|.+-..+ ..+.+.....+++-+.|...+..
T Consensus 14 ~~~~mgt--i~eLq~~L~~K~eELr~kd~~I-----~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 14 SIEGRGS--LRDLQYALQEKIEELRQRDALI-----DELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp -----CH--HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCCc--HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445543 7778888888888777664332 24444445555566666666554
No 26
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=20.82 E-value=3.8e+02 Score=27.65 Aligned_cols=22 Identities=5% Similarity=-0.038 Sum_probs=12.6
Q ss_pred HHHHHhhhhhhhhhhhHHHHHh
Q 024893 163 VNKATSRKLEHDHSNDAKSLVN 184 (261)
Q Consensus 163 ~~kkk~~~lee~n~~L~~~l~~ 184 (261)
.++.+...|+++|..|...+..
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~~~ 1041 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEKEE 1041 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666654433
Done!