BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024894
(261 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1APY|B Chain B, Human Aspartylglucosaminidase
pdb|1APY|D Chain D, Human Aspartylglucosaminidase
pdb|1APZ|B Chain B, Human Aspartylglucosaminidase Complex With Reaction
Product
pdb|1APZ|D Chain D, Human Aspartylglucosaminidase Complex With Reaction
Product
Length = 141
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 85/129 (65%), Gaps = 4/129 (3%)
Query: 126 TISMAVIDKMGHVAVGTSTNGATFKIPGRVGDGPIAGSSAYADEEVGACGATGDGDIMMR 185
TI M VI K GH+A GTSTNG FKI GRVGD PI G+ AYAD+ GA ATG+GDI+MR
Sbjct: 1 TIGMVVIHKTGHIAAGTSTNGIKFKIHGRVGDSPIPGAGAYADDTAGAAAATGNGDILMR 60
Query: 186 FLPCYQTVESMRQGMGPELAAKDAISRIARKFPDFVGAVVAINKNGEHAGACHGWT---- 241
FLP YQ VE MR+G P +A + ISRI + FP+F GAV+ N G + AC+ +
Sbjct: 61 FLPSYQAVEYMRRGEDPTIACQKVISRIQKHFPEFFGAVICANVTGSYGAACNKLSTFTQ 120
Query: 242 FKYSVRSPE 250
F + V + E
Sbjct: 121 FSFMVYNSE 129
>pdb|9GAF|A Chain A, Precursor Of The W11f Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
pdb|9GAF|C Chain C, Precursor Of The W11f Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
Length = 295
Score = 121 bits (303), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 117/250 (46%), Gaps = 49/250 (19%)
Query: 8 VGAVAAMRFVKDGIRAARLVMQHTEHTLLAGEKASAFAIAMGLPGPANLSSAESMDKWTK 67
+G+VA M +K+ I AR VM+ T H +L G+ A FA++ G NL +AES +W +
Sbjct: 76 IGSVACMEHIKNPISVARAVMEKTPHVMLVGDGALEFALSQGFK-KENLLTAESEKEWKE 134
Query: 68 WRENGCQPNFWKNVVPVDGCGPYQPKCNMGPSEGECPASNLMGVTESGSSYVGLHSHDTI 127
W + Y+P N + +HDTI
Sbjct: 135 WLK----------------TSQYKPIVN-------------------------IENHDTI 153
Query: 128 SMAVIDKMGHVAVGTSTNGATFKIPGRVGDGPIAGSSAYADEEVGACGATGDGDIMMRFL 187
M +D G+++ +T+G +K+ GRVGD PI G+ + D E+GA ATG G+ ++R +
Sbjct: 154 GMIALDAQGNLSGACTTSGMAYKMHGRVGDSPIIGAGLFVDNEIGAATATGHGEEVIRTV 213
Query: 188 PCYQTVESMRQGMGPELAAKDAISRIA-------RKFPDFVGAVVAINKNGEHAGACHGW 240
+ VE M QG P+ A K+A+ RI + D +A+NK GE+ C
Sbjct: 214 GTHLVVELMNQGRTPQQACKEAVERIVKIVNRRGKNLKDIQVGFIALNKKGEYGAYCIQD 273
Query: 241 TFKYSVRSPE 250
F ++V +
Sbjct: 274 GFNFAVHDQK 283
>pdb|1P4K|A Chain A, Crystal Structure Of The Glycosylasparaginase Precursor
D151n Mutant
pdb|1P4K|C Chain C, Crystal Structure Of The Glycosylasparaginase Precursor
D151n Mutant
pdb|1P4V|A Chain A, Crystal Structure Of The Glycosylasparaginase Precursor
D151n Mutant With Glycine
pdb|1P4V|C Chain C, Crystal Structure Of The Glycosylasparaginase Precursor
D151n Mutant With Glycine
Length = 295
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 117/250 (46%), Gaps = 49/250 (19%)
Query: 8 VGAVAAMRFVKDGIRAARLVMQHTEHTLLAGEKASAFAIAMGLPGPANLSSAESMDKWTK 67
+G+VA M +K+ I AR VM+ T H +L G+ A FA++ G NL +AES +W +
Sbjct: 76 IGSVACMEHIKNPISVARAVMEKTPHVMLVGDGALEFALSQGFK-KENLLTAESEKEWKE 134
Query: 68 WRENGCQPNFWKNVVPVDGCGPYQPKCNMGPSEGECPASNLMGVTESGSSYVGLHSHDTI 127
W + Y+P N + +H+TI
Sbjct: 135 WLK----------------TSQYKPIVN-------------------------IENHNTI 153
Query: 128 SMAVIDKMGHVAVGTSTNGATFKIPGRVGDGPIAGSSAYADEEVGACGATGDGDIMMRFL 187
M +D G+++ +T+G +K+ GRVGD PI G+ + D E+GA ATG G+ ++R +
Sbjct: 154 GMIALDAQGNLSGACTTSGMAYKMHGRVGDSPIIGAGLFVDNEIGAATATGHGEEVIRTV 213
Query: 188 PCYQTVESMRQGMGPELAAKDAISRIA-------RKFPDFVGAVVAINKNGEHAGACHGW 240
+ VE M QG P+ A K+A+ RI + D +A+NK GE+ C
Sbjct: 214 GTHLVVELMNQGRTPQQACKEAVERIVKIVNRRGKNLKDIQVGFIALNKKGEYGAYCIQD 273
Query: 241 TFKYSVRSPE 250
F ++V +
Sbjct: 274 GFNFAVHDQK 283
>pdb|3LJQ|A Chain A, Crystal Structure Of The Glycosylasparaginase T152c
Apo-Precursor
pdb|3LJQ|C Chain C, Crystal Structure Of The Glycosylasparaginase T152c
Apo-Precursor
Length = 299
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 115/246 (46%), Gaps = 49/246 (19%)
Query: 8 VGAVAAMRFVKDGIRAARLVMQHTEHTLLAGEKASAFAIAMGLPGPANLSSAESMDKWTK 67
+G+VA M +K+ I AR VM+ T H +L G+ A FA++ G NL +AES +W +
Sbjct: 80 IGSVACMEHIKNPISVARAVMEKTPHVMLVGDGALEFALSQGFK-KENLLTAESEKEWKE 138
Query: 68 WRENGCQPNFWKNVVPVDGCGPYQPKCNMGPSEGECPASNLMGVTESGSSYVGLHSHDTI 127
W + Y+P V + +HD I
Sbjct: 139 WLKTS----------------QYKP-------------------------IVNIENHDCI 157
Query: 128 SMAVIDKMGHVAVGTSTNGATFKIPGRVGDGPIAGSSAYADEEVGACGATGDGDIMMRFL 187
M +D G+++ +T+G +K+ GRVGD PI G+ + D E+GA ATG G+ ++R +
Sbjct: 158 GMIALDAQGNLSGACTTSGMAYKMHGRVGDSPIIGAGLFVDNEIGAATATGHGEEVIRTV 217
Query: 188 PCYQTVESMRQGMGPELAAKDAISRIA-------RKFPDFVGAVVAINKNGEHAGACHGW 240
+ VE M QG P+ A K+A+ RI + D +A+NK GE+ C
Sbjct: 218 GTHLVVELMNQGRTPQQACKEAVERIVKIVNRRGKNLKDIQVGFIALNKKGEYGAYCIQD 277
Query: 241 TFKYSV 246
F ++V
Sbjct: 278 GFNFAV 283
>pdb|9GAA|A Chain A, Precursor Of The T152a Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
pdb|9GAA|C Chain C, Precursor Of The T152a Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
Length = 295
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 116/250 (46%), Gaps = 49/250 (19%)
Query: 8 VGAVAAMRFVKDGIRAARLVMQHTEHTLLAGEKASAFAIAMGLPGPANLSSAESMDKWTK 67
+G+VA M +K+ I AR VM+ T H +L G+ A FA++ G NL +AES +W +
Sbjct: 76 IGSVACMEHIKNPISVARAVMEKTPHVMLVGDGALEFALSQGFK-KENLLTAESEKEWKE 134
Query: 68 WRENGCQPNFWKNVVPVDGCGPYQPKCNMGPSEGECPASNLMGVTESGSSYVGLHSHDTI 127
W + Y+P N + +HD I
Sbjct: 135 WLK----------------TSQYKPIVN-------------------------IENHDAI 153
Query: 128 SMAVIDKMGHVAVGTSTNGATFKIPGRVGDGPIAGSSAYADEEVGACGATGDGDIMMRFL 187
M +D G+++ +T+G +K+ GRVGD PI G+ + D E+GA ATG G+ ++R +
Sbjct: 154 GMIALDAQGNLSGACTTSGMAYKMHGRVGDSPIIGAGLFVDNEIGAATATGHGEEVIRTV 213
Query: 188 PCYQTVESMRQGMGPELAAKDAISRIA-------RKFPDFVGAVVAINKNGEHAGACHGW 240
+ VE M QG P+ A K+A+ RI + D +A+NK GE+ C
Sbjct: 214 GTHLVVELMNQGRTPQQACKEAVERIVKIVNRRGKNLKDIQVGFIALNKKGEYGAYCIQD 273
Query: 241 TFKYSVRSPE 250
F ++V +
Sbjct: 274 GFNFAVHDQK 283
>pdb|9GAC|A Chain A, Precursor Of The T152c Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
pdb|9GAC|C Chain C, Precursor Of The T152c Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
Length = 295
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 116/250 (46%), Gaps = 49/250 (19%)
Query: 8 VGAVAAMRFVKDGIRAARLVMQHTEHTLLAGEKASAFAIAMGLPGPANLSSAESMDKWTK 67
+G+VA M +K+ I AR VM+ T H +L G+ A FA++ G NL +AES +W +
Sbjct: 76 IGSVACMEHIKNPISVARAVMEKTPHVMLVGDGALEFALSQGFK-KENLLTAESEKEWKE 134
Query: 68 WRENGCQPNFWKNVVPVDGCGPYQPKCNMGPSEGECPASNLMGVTESGSSYVGLHSHDTI 127
W + Y+P V + +HD I
Sbjct: 135 WLKTS----------------QYKP-------------------------IVNIENHDCI 153
Query: 128 SMAVIDKMGHVAVGTSTNGATFKIPGRVGDGPIAGSSAYADEEVGACGATGDGDIMMRFL 187
M +D G+++ +T+G +K+ GRVGD PI G+ + D E+GA ATG G+ ++R +
Sbjct: 154 GMIALDAQGNLSGACTTSGMAYKMHGRVGDSPIIGAGLFVDNEIGAATATGHGEEVIRTV 213
Query: 188 PCYQTVESMRQGMGPELAAKDAISRIA-------RKFPDFVGAVVAINKNGEHAGACHGW 240
+ VE M QG P+ A K+A+ RI + D +A+NK GE+ C
Sbjct: 214 GTHLVVELMNQGRTPQQACKEAVERIVKIVNRRGKNLKDIQVGFIALNKKGEYGAYCIQD 273
Query: 241 TFKYSVRSPE 250
F ++V +
Sbjct: 274 GFNFAVHDQK 283
>pdb|1APY|A Chain A, Human Aspartylglucosaminidase
pdb|1APY|C Chain C, Human Aspartylglucosaminidase
pdb|1APZ|A Chain A, Human Aspartylglucosaminidase Complex With Reaction
Product
pdb|1APZ|C Chain C, Human Aspartylglucosaminidase Complex With Reaction
Product
Length = 162
Score = 91.3 bits (225), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 61/94 (64%), Gaps = 3/94 (3%)
Query: 1 MNGATMEVGAVAAMRFVKDGIRAARLVMQHTEHTLLAGEKASAFAIAMGLPGPANLSSAE 60
M+G TM+VGAV +R +K+ I AR V++HT HTLL GE A+ FA +MG +LS++
Sbjct: 69 MDGTTMDVGAVGDLRRIKNAIGVARKVLEHTTHTLLVGESATTFAQSMGFIN-EDLSTSA 127
Query: 61 SMDKWTKWRENGCQPNFWKNVV--PVDGCGPYQP 92
S + W CQPN+W+NV+ P CGPY+P
Sbjct: 128 SQALHSDWLARNCQPNYWRNVIPDPSKYCGPYKP 161
>pdb|1AYY|B Chain B, Glycosylasparaginase
pdb|1AYY|D Chain D, Glycosylasparaginase
pdb|2GAW|B Chain B, Wild Type Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GAW|D Chain D, Wild Type Glycosylasparaginase From Flavobacterium
Meningosepticum
Length = 144
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 71/132 (53%), Gaps = 7/132 (5%)
Query: 126 TISMAVIDKMGHVAVGTSTNGATFKIPGRVGDGPIAGSSAYADEEVGACGATGDGDIMMR 185
TI M +D G+++ +T+G +K+ GRVGD PI G+ + D E+GA ATG G+ ++R
Sbjct: 1 TIGMIALDAQGNLSGACTTSGMAYKMHGRVGDSPIIGAGLFVDNEIGAATATGHGEEVIR 60
Query: 186 FLPCYQTVESMRQGMGPELAAKDAISRIA-------RKFPDFVGAVVAINKNGEHAGACH 238
+ + VE M QG P+ A K+A+ RI + D +A+NK GE+ C
Sbjct: 61 TVGTHLVVELMNQGRTPQQACKEAVERIVKIVNRRGKNLKDIQVGFIALNKKGEYGAYCI 120
Query: 239 GWTFKYSVRSPE 250
F ++V +
Sbjct: 121 QDGFNFAVHDQK 132
>pdb|2ZAK|A Chain A, Orthorhombic Crystal Structure Of Precursor E. Coli
Isoaspartyl PeptidaseL-Asparaginase (Ecaiii) With
Active-Site T179a Mutation
pdb|2ZAK|B Chain B, Orthorhombic Crystal Structure Of Precursor E. Coli
Isoaspartyl PeptidaseL-Asparaginase (Ecaiii) With
Active-Site T179a Mutation
pdb|3C17|A Chain A, Hexagonal Crystal Structure Of Precursor E. Coli
Isoaspartyl Peptidase/l-asparaginase (ecaiii) With
Active-site T179a Mutation
pdb|3C17|B Chain B, Hexagonal Crystal Structure Of Precursor E. Coli
Isoaspartyl Peptidase/l-asparaginase (ecaiii) With
Active-site T179a Mutation
Length = 320
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 105/239 (43%), Gaps = 43/239 (17%)
Query: 1 MNGATMEVGAVAAMRFVKDGIRAARLVMQHTEHTLLAGEKASAFAIAMGLP--GPANLSS 58
M+G T++ GAVA + +++ + AARLVM+ + H ++ GE A FA A G+ P S+
Sbjct: 86 MDGNTLKAGAVAGVSHLRNPVLAARLVMEQSPHVMMIGEGAENFAFARGMERVSPEIFST 145
Query: 59 AESMDKWTKWRENGCQPNFWKNVVPVDGCGPYQPKCNMGPSEGECPASNLMGVTESGSSY 118
+ ++ R+ G V+ G P K MG
Sbjct: 146 SLRYEQLLAARKEGA------TVLDHSGA-PLDEKQKMG--------------------- 177
Query: 119 VGLHSHDTISMAVIDKMGHVAVGTSTNGATFKIPGRVGDGPIAGSSAYADEEVGACGATG 178
+ +D G++A TST G T K+PGRVGD P+ G+ YA+ A TG
Sbjct: 178 -------AVGAVALDLDGNLAAATSTGGMTNKLPGRVGDSPLVGAGCYANNASVAVSCTG 230
Query: 179 DGDIMMRFLPCYQTVESMRQGMGPELAAKDAISRIA-RKFPDF--VGAVVAINKNGEHA 234
G++ +R L Y M G L+ +A R+ K P G ++AI+ G A
Sbjct: 231 TGEVFIRALAAYDIAALMDYG---GLSLAEACERVVMEKLPALGGSGGLIAIDHEGNVA 286
>pdb|2GAC|B Chain B, T152c Mutant Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GAC|D Chain D, T152c Mutant Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GL9|B Chain B, Crystal Structure Of Glycosylasparaginase-Substrate
Complex
pdb|2GL9|D Chain D, Crystal Structure Of Glycosylasparaginase-Substrate
Complex
Length = 144
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 7/131 (5%)
Query: 127 ISMAVIDKMGHVAVGTSTNGATFKIPGRVGDGPIAGSSAYADEEVGACGATGDGDIMMRF 186
I M +D G+++ +T+G +K+ GRVGD PI G+ + D E+GA ATG G+ ++R
Sbjct: 2 IGMIALDAQGNLSGACTTSGMAYKMHGRVGDSPIIGAGLFVDNEIGAATATGHGEEVIRT 61
Query: 187 LPCYQTVESMRQGMGPELAAKDAISRIA-------RKFPDFVGAVVAINKNGEHAGACHG 239
+ + VE M QG P+ A K+A+ RI + D +A+NK GE+ C
Sbjct: 62 VGTHLVVELMNQGRTPQQACKEAVERIVKIVNRRGKNLKDIQVGFIALNKKGEYGAYCIQ 121
Query: 240 WTFKYSVRSPE 250
F ++V +
Sbjct: 122 DGFNFAVHDQK 132
>pdb|4GDT|A Chain A, Crystal Structure Of Malonate-Bound Human L-Asparaginase
Protein
pdb|4GDT|B Chain B, Crystal Structure Of Malonate-Bound Human L-Asparaginase
Protein
pdb|4GDU|A Chain A, Crystal Structure Of Sulfate-Bound Human L-Asparaginase
Protein
pdb|4GDU|B Chain B, Crystal Structure Of Sulfate-Bound Human L-Asparaginase
Protein
pdb|4GDV|A Chain A, Crystal Structure Of Partially-Cleaved Human
L-Asparaginase Protein In Complex With L-Aspartate
pdb|4GDV|B Chain B, Crystal Structure Of Partially-Cleaved Human
L-Asparaginase Protein In Complex With L-Aspartate
pdb|4GDW|A Chain A, Crystal Structure Of Fully-Cleaved Human L-Asparaginase
Protein In Complex With L-Aspartate
pdb|4GDW|B Chain B, Crystal Structure Of Fully-Cleaved Human L-Asparaginase
Protein In Complex With L-Aspartate
Length = 310
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 109/248 (43%), Gaps = 47/248 (18%)
Query: 1 MNGATMEVGAVAAMRFVKDGIRAARLVMQHTEHTLLAGEKASAFAIAMGLPGPANLSSAE 60
M+G + GAV+A++ + + I+ ARLVM+ T H L + A+ FA AMG+P + +
Sbjct: 84 MDGKDLSAGAVSAVQCIANPIKLARLVMEKTPHCFLTDQGAAQFAAAMGVP---EIPGEK 140
Query: 61 SMDKWTKWRENGCQPNFWKNVVPVDGCGPYQPKCNMGPSEGECPASNLMGVTESGSSYVG 120
+ + K R + K G + +C NL
Sbjct: 141 LVTERNKKRLE-------------------KEKHEKGAQKTDCQ-KNL------------ 168
Query: 121 LHSHDTISMAVIDKMGHVAVGTSTNGATFKIPGRVGDGPIAGSSAYADEEVGACGATGDG 180
T+ +D G+VA TST G K+ GRVGD P G+ YAD ++GA TG G
Sbjct: 169 ----GTVGAVALDCKGNVAYATSTGGIVNKMVGRVGDSPCLGAGGYADNDIGAVSTTGHG 224
Query: 181 DIMMRFLPCYQTVESMRQGMGPELAAKDAISRIARKFPDFVGAVVAINKNGEHAGACHGW 240
+ +++ T+ + QG E AA ++ + + G ++ ++K G+ W
Sbjct: 225 ESILKVNLARLTLFHIEQGKTVEEAADLSLGYMKSRVKGL-GGLIVVSKTGD-------W 276
Query: 241 TFKYSVRS 248
K++ S
Sbjct: 277 VAKWTSTS 284
>pdb|4ET0|A Chain A, Crystal Structure Of Circularly Permuted Human
Asparaginase-Like Protein 1
pdb|4ET0|B Chain B, Crystal Structure Of Circularly Permuted Human
Asparaginase-Like Protein 1
Length = 327
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 110/248 (44%), Gaps = 40/248 (16%)
Query: 1 MNGATMEVGAVAAMRFVKDGIRAARLVMQHTEHTLLAGEKASAFAIAMGLPGPANLSSAE 60
M+G + GAV+A++ + + I+ ARLVM+ T H L + A+ FA AMG+P + +
Sbjct: 82 MDGKDLSAGAVSAVQCIANPIKLARLVMEKTPHCFLTDQGAAQFAAAMGVP---EIPGEK 138
Query: 61 SMDKWTKWRENGCQPNFWKNVVPVDGCGPYQPKCNMGPSEGECPASNLMGVTESGSSYVG 120
+ + K R + K G + +C + +G VG
Sbjct: 139 LVTERNKKRLE-------------------KEKHEKGAQKTDCQKN--LGHHHHHHMTVG 177
Query: 121 LHSHDTISMAVIDKMGHVAVGTSTNGATFKIPGRVGDGPIAGSSAYADEEVGACGATGDG 180
+D G+VA TST G K+ GRVGD P G+ YAD ++GA TG G
Sbjct: 178 --------AVALDCKGNVAYATSTGGIVNKMVGRVGDSPCLGAGGYADNDIGAVSTTGHG 229
Query: 181 DIMMRFLPCYQTVESMRQGMGPELAAKDAISRIARKFPDFVGAVVAINKNGEHAGACHGW 240
+ +++ T+ + QG E AA ++ + + G ++ ++K G+ W
Sbjct: 230 ESILKVNLARLTLFHIEQGKTVEEAADLSLGYMKSRVKGL-GGLIVVSKTGD-------W 281
Query: 241 TFKYSVRS 248
K++ S
Sbjct: 282 VAKWTSTS 289
>pdb|3TKJ|A Chain A, Crystal Structure Of Human Asparaginase-Like Protein 1
Thr168ala
pdb|3TKJ|B Chain B, Crystal Structure Of Human Asparaginase-Like Protein 1
Thr168ala
Length = 319
Score = 77.0 bits (188), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 108/248 (43%), Gaps = 47/248 (18%)
Query: 1 MNGATMEVGAVAAMRFVKDGIRAARLVMQHTEHTLLAGEKASAFAIAMGLPGPANLSSAE 60
M+G + GAV+A++ + + I+ ARLVM+ T H L + A+ FA AMG+P + +
Sbjct: 93 MDGKDLSAGAVSAVQCIANPIKLARLVMEKTPHCFLTDQGAAQFAAAMGVP---EIPGEK 149
Query: 61 SMDKWTKWRENGCQPNFWKNVVPVDGCGPYQPKCNMGPSEGECPASNLMGVTESGSSYVG 120
+ + K R + K G + +C NL
Sbjct: 150 LVTERNKKRLE-------------------KEKHEKGAQKTDCQ-KNL------------ 177
Query: 121 LHSHDTISMAVIDKMGHVAVGTSTNGATFKIPGRVGDGPIAGSSAYADEEVGACGATGDG 180
+ +D G+VA TST G K+ GRVGD P G+ YAD ++GA TG G
Sbjct: 178 ----GAVGAVALDCKGNVAYATSTGGIVNKMVGRVGDSPCLGAGGYADNDIGAVSTTGHG 233
Query: 181 DIMMRFLPCYQTVESMRQGMGPELAAKDAISRIARKFPDFVGAVVAINKNGEHAGACHGW 240
+ +++ T+ + QG E AA ++ + + G ++ ++K G+ W
Sbjct: 234 ESILKVNLARLTLFHIEQGKTVEEAADLSLGYMKSRVKGL-GGLIVVSKTGD-------W 285
Query: 241 TFKYSVRS 248
K++ S
Sbjct: 286 VAKWTSTS 293
>pdb|1JN9|B Chain B, Structure Of Putative Asparaginase Encoded By Escherichia
Coli Ybik Gene
pdb|1JN9|D Chain D, Structure Of Putative Asparaginase Encoded By Escherichia
Coli Ybik Gene
pdb|1K2X|B Chain B, Crystal Structure Of Putative Asparaginase Encoded By
Escherichia Coli Ybik Gene
pdb|1K2X|D Chain D, Crystal Structure Of Putative Asparaginase Encoded By
Escherichia Coli Ybik Gene
Length = 143
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 126 TISMAVIDKMGHVAVGTSTNGATFKIPGRVGDGPIAGSSAYADEEVGACGATGDGDIMMR 185
T+ +D G++A TST G T K+PGRVGD P+ G+ YA+ A TG G++ +R
Sbjct: 1 TVGAVALDLDGNLAAATSTGGMTNKLPGRVGDSPLVGAGCYANNASVAVSCTGTGEVFIR 60
Query: 186 FLPCYQTVESMRQGMGPELAAKDAISRIA-RKFPDF--VGAVVAINKNGEHA 234
L Y M G L+ +A R+ K P G ++AI+ G A
Sbjct: 61 ALAAYDIAALMDYG---GLSLAEACERVVMEKLPALGGSGGLIAIDHEGNVA 109
>pdb|2ZAL|B Chain B, Crystal Structure Of E. Coli Isoaspartyl
AminopeptidaseL-Asparaginase In Complex With L-Aspartate
pdb|2ZAL|D Chain D, Crystal Structure Of E. Coli Isoaspartyl
AminopeptidaseL-Asparaginase In Complex With L-Aspartate
Length = 137
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 126 TISMAVIDKMGHVAVGTSTNGATFKIPGRVGDGPIAGSSAYADEEVGACGATGDGDIMMR 185
T+ +D G++A TST G T K+PGRVGD P+ G+ YA+ A TG G++ +R
Sbjct: 1 TVGAVALDLDGNLAAATSTGGMTNKLPGRVGDSPLVGAGCYANNASVAVSCTGTGEVFIR 60
Query: 186 FLPCYQTVESMRQGMGPELAAKDAISRIA-RKFPDF--VGAVVAINKNGEHA 234
L Y M G L+ +A R+ K P G ++AI+ G A
Sbjct: 61 ALAAYDIAALMDYG---GLSLAEACERVVMEKLPALGGSGGLIAIDHEGNVA 109
>pdb|1T3M|B Chain B, Structure Of The Isoaspartyl Peptidase With L-Asparaginase
Activity From E. Coli
pdb|1T3M|D Chain D, Structure Of The Isoaspartyl Peptidase With L-Asparaginase
Activity From E. Coli
Length = 147
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 126 TISMAVIDKMGHVAVGTSTNGATFKIPGRVGDGPIAGSSAYADEEVGACGATGDGDIMMR 185
T+ +D G++A TST G T K+PGRVGD P+ G+ YA+ A TG G++ +R
Sbjct: 1 TVGAVALDLDGNLAAATSTGGMTNKLPGRVGDSPLVGAGCYANNASVAVSCTGTGEVFIR 60
Query: 186 FLPCYQTVESMRQGMGPELAAKDAISRIA-RKFPDF--VGAVVAINKNGEHA 234
L Y M G L+ +A R+ K P G ++AI+ G A
Sbjct: 61 ALAAYDIAALMDYG---GLSLAEACERVVMEKLPALGGSGGLIAIDHEGNVA 109
>pdb|1AYY|A Chain A, Glycosylasparaginase
pdb|1AYY|C Chain C, Glycosylasparaginase
pdb|2GAC|A Chain A, T152c Mutant Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GAC|C Chain C, T152c Mutant Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GAW|A Chain A, Wild Type Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GAW|C Chain C, Wild Type Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GL9|A Chain A, Crystal Structure Of Glycosylasparaginase-Substrate
Complex
pdb|2GL9|C Chain C, Crystal Structure Of Glycosylasparaginase-Substrate
Complex
Length = 151
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 8 VGAVAAMRFVKDGIRAARLVMQHTEHTLLAGEKASAFAIAMGLPGPANLSSAESMDKWTK 67
+G+VA M +K+ I AR VM+ T H +L G+ A FA++ G NL +AES +W +
Sbjct: 76 IGSVACMEHIKNPISVARAVMEKTPHVMLVGDGALEFALSQGFK-KENLLTAESEKEWKE 134
Query: 68 W 68
W
Sbjct: 135 W 135
>pdb|1T3M|A Chain A, Structure Of The Isoaspartyl Peptidase With L-Asparaginase
Activity From E. Coli
pdb|1T3M|C Chain C, Structure Of The Isoaspartyl Peptidase With L-Asparaginase
Activity From E. Coli
Length = 177
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 1 MNGATMEVGAVAAMRFVKDGIRAARLVMQHTEHTLLAGEKASAFAIAMGLP--GPANLSS 58
M+G T++ GAVA + +++ + AARLVM+ + H ++ GE A FA A G+ P S+
Sbjct: 86 MDGNTLKAGAVAGVSHLRNPVLAARLVMEQSPHVMMIGEGAENFAFARGMERVSPEIFST 145
Query: 59 AESMDKWTKWRENGC 73
+ ++ R+ G
Sbjct: 146 SLRYEQLLAARKEGA 160
>pdb|1JN9|A Chain A, Structure Of Putative Asparaginase Encoded By Escherichia
Coli Ybik Gene
pdb|1JN9|C Chain C, Structure Of Putative Asparaginase Encoded By Escherichia
Coli Ybik Gene
pdb|1K2X|A Chain A, Crystal Structure Of Putative Asparaginase Encoded By
Escherichia Coli Ybik Gene
pdb|1K2X|C Chain C, Crystal Structure Of Putative Asparaginase Encoded By
Escherichia Coli Ybik Gene
Length = 177
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 1 MNGATMEVGAVAAMRFVKDGIRAARLVMQHTEHTLLAGEKASAFAIAMGLP--GPANLSS 58
M+G T++ GAVA + +++ + AARLVM+ + H ++ GE A FA A G+ P S+
Sbjct: 86 MDGNTLKAGAVAGVSHLRNPVLAARLVMEQSPHVMMIGEGAENFAFARGMERVSPEIFST 145
Query: 59 AESMDKWTKWRENGC 73
+ ++ R+ G
Sbjct: 146 SLRYEQLLAARKEGA 160
>pdb|2ZAL|C Chain C, Crystal Structure Of E. Coli Isoaspartyl
AminopeptidaseL-Asparaginase In Complex With L-Aspartate
pdb|2ZAL|A Chain A, Crystal Structure Of E. Coli Isoaspartyl
AminopeptidaseL-Asparaginase In Complex With L-Aspartate
Length = 160
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 1 MNGATMEVGAVAAMRFVKDGIRAARLVMQHTEHTLLAGEKASAFAIAMGLP--GPANLSS 58
M+G T++ GAVA + +++ + AARLVM+ + H ++ GE A FA A G+ P S+
Sbjct: 86 MDGNTLKAGAVAGVSHLRNPVLAARLVMEQSPHVMMIGEGAENFAFARGMERVSPEIFST 145
Query: 59 AESMDKWTKWRENG 72
+ ++ R+ G
Sbjct: 146 SLRYEQLLAARKEG 159
>pdb|2GEZ|B Chain B, Crystal Structure Of Potassium-Independent Plant
Asparaginase
pdb|2GEZ|D Chain D, Crystal Structure Of Potassium-Independent Plant
Asparaginase
pdb|2GEZ|F Chain F, Crystal Structure Of Potassium-Independent Plant
Asparaginase
pdb|2GEZ|H Chain H, Crystal Structure Of Potassium-Independent Plant
Asparaginase
Length = 133
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 126 TISMAVIDKMGHVAVGTSTNGATFKIPGRVGDGPIAGSSAYADEEVGACGATGDGDIMMR 185
T+ +D G++A TST G K+ GR+GD P+ G+ YA+ E+ A ATG G+ ++R
Sbjct: 1 TVGCVAVDSHGNLASATSTGGLVNKMVGRIGDTPLIGAGTYAN-ELCAVSATGKGEEIIR 59
Query: 186 FLPCYQTVESMR-QGMGPELAAKDAISRIARKFPDFVGAVVAINKNGEHA 234
M +G+ + AA I + P ++A++ GE A
Sbjct: 60 ATVARDVAALMEFKGLSLKEAADFVIH---ERTPKGTVGLIAVSAAGEIA 106
>pdb|2GEZ|A Chain A, Crystal Structure Of Potassium-Independent Plant
Asparaginase
pdb|2GEZ|C Chain C, Crystal Structure Of Potassium-Independent Plant
Asparaginase
pdb|2GEZ|E Chain E, Crystal Structure Of Potassium-Independent Plant
Asparaginase
pdb|2GEZ|G Chain G, Crystal Structure Of Potassium-Independent Plant
Asparaginase
Length = 195
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 10/109 (9%)
Query: 1 MNGATMEVGAVAAMRFVKDGIRAARLVMQHTEHTLLAGEKASAFAIAMGLP--GPANLSS 58
M+G TM+ GAV+ + V + I ARLVM T H LA + A FA G+ ++L +
Sbjct: 89 MDGNTMKCGAVSGLSTVLNPISLARLVMDKTPHIYLAFQGAQDFAKQQGVETVDSSHLIT 148
Query: 59 AESMDKWTKWRENGCQPNFWKNVVPVDGCGPYQPKCNMGPSEGECPASN 107
AE++++ E N V VD P+ +E E P +N
Sbjct: 149 AENVERLKLAIE--------ANRVQVDYSQYNYPEPVKDDAEKELPLTN 189
>pdb|2A8J|A Chain A, Crystal Structure Of Human Taspase1 (Acivated Form)
pdb|2A8J|B Chain B, Crystal Structure Of Human Taspase1 (Acivated Form)
Length = 420
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 73/179 (40%), Gaps = 33/179 (18%)
Query: 1 MNGATMEVGAVAAMRFVKDGIRAA-RLVMQHTEHTL---------LAGEKASAFAIAMGL 50
M+G ++ GAV A+ +K+ + A RL+ + + L L GE A +A+ G+
Sbjct: 120 MDGKSLNFGAVGALSGIKNPVSVANRLLCEGQKGKLSAGRIPPCFLVGEGAYRWAVDHGI 179
Query: 51 PG-PANLSSAESMDKWTKWRENGCQPNFWKNVVPVDGCGPYQPKCNMGPSEGECPASNLM 109
P P N+ + + ++ N + + V Q K SE E + L
Sbjct: 180 PSCPPNIMT--TRFSLAAFKRNKRKLELAERV----DTDFMQLKKRRQSSEKENDSGTL- 232
Query: 110 GVTESGSSYVGLHSHDTISMAVIDKMGHVAVGTSTNGATFKIPGRVGDGPIAGSSAYAD 168
DT+ V+D G+VA S+ G K PGRVG + G +A+
Sbjct: 233 ---------------DTVGAVVVDHEGNVAAAVSSGGLALKHPGRVGQAALYGCGCWAE 276
>pdb|2A8M|A Chain A, Crystal Structure Of Human Taspase1 (T234s Mutant)
pdb|2A8M|B Chain B, Crystal Structure Of Human Taspase1 (T234s Mutant)
Length = 420
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 73/179 (40%), Gaps = 33/179 (18%)
Query: 1 MNGATMEVGAVAAMRFVKDGIRAA-RLVMQHTEHTL---------LAGEKASAFAIAMGL 50
M+G ++ GAV A+ +K+ + A RL+ + + L L GE A +A+ G+
Sbjct: 120 MDGKSLNFGAVGALSGIKNPVSVANRLLCEGQKGKLSAGRIPPCFLVGEGAYRWAVDHGI 179
Query: 51 PG-PANLSSAESMDKWTKWRENGCQPNFWKNVVPVDGCGPYQPKCNMGPSEGECPASNLM 109
P P N+ + + ++ N + + V Q K SE E + L
Sbjct: 180 PSCPPNIMT--TRFSLAAFKRNKRKLELAERV----DTDFMQLKKRRQSSEKENDSGTL- 232
Query: 110 GVTESGSSYVGLHSHDTISMAVIDKMGHVAVGTSTNGATFKIPGRVGDGPIAGSSAYAD 168
D++ V+D G+VA S+ G K PGRVG + G +A+
Sbjct: 233 ---------------DSVGAVVVDHEGNVAAAVSSGGLALKHPGRVGQAALYGCGCWAE 276
>pdb|2A8I|A Chain A, Crystal Structure Of Human Taspase1
pdb|2A8I|B Chain B, Crystal Structure Of Human Taspase1
Length = 420
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 72/178 (40%), Gaps = 33/178 (18%)
Query: 2 NGATMEVGAVAAMRFVKDGIRAA-RLVMQHTEHTL---------LAGEKASAFAIAMGLP 51
+G ++ GAV A+ +K+ + A RL+ + + L L GE A +A+ G+P
Sbjct: 121 DGKSLNFGAVGALSGIKNPVSVANRLLCEGQKGKLSAGRIPPCFLVGEGAYRWAVDHGIP 180
Query: 52 G-PANLSSAESMDKWTKWRENGCQPNFWKNVVPVDGCGPYQPKCNMGPSEGECPASNLMG 110
P N+ + + ++ N + + V Q K SE E + L
Sbjct: 181 SCPPNIXT--TRFSLAAFKRNKRKLELAERV----DTDFXQLKKRRQSSEKENDSGTL-- 232
Query: 111 VTESGSSYVGLHSHDTISMAVIDKMGHVAVGTSTNGATFKIPGRVGDGPIAGSSAYAD 168
DT+ V+D G+VA S+ G K PGRVG + G +A+
Sbjct: 233 --------------DTVGAVVVDHEGNVAAAVSSGGLALKHPGRVGQAALYGCGCWAE 276
>pdb|2A8L|A Chain A, Crystal Structure Of Human Taspase1 (T234a Mutant)
pdb|2A8L|B Chain B, Crystal Structure Of Human Taspase1 (T234a Mutant)
Length = 420
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 72/179 (40%), Gaps = 33/179 (18%)
Query: 1 MNGATMEVGAVAAMRFVKDGIRAA-RLVMQHTEHTL---------LAGEKASAFAIAMGL 50
M+G ++ GAV A+ +K+ + A RL+ + + L L GE A +A+ G+
Sbjct: 120 MDGKSLNFGAVGALSGIKNPVSVANRLLCEGQKGKLSAGRIPPCFLVGEGAYRWAVDHGI 179
Query: 51 PG-PANLSSAESMDKWTKWRENGCQPNFWKNVVPVDGCGPYQPKCNMGPSEGECPASNLM 109
P P N+ + + ++ N + + V Q K SE E + L
Sbjct: 180 PSCPPNIMT--TRFSLAAFKRNKRKLELAERV----DTDFMQLKKRRQSSEKENDSGTL- 232
Query: 110 GVTESGSSYVGLHSHDTISMAVIDKMGHVAVGTSTNGATFKIPGRVGDGPIAGSSAYAD 168
D + V+D G+VA S+ G K PGRVG + G +A+
Sbjct: 233 ---------------DAVGAVVVDHEGNVAAAVSSGGLALKHPGRVGQAALYGCGCWAE 276
>pdb|2QV3|A Chain A, Crystal Structure Of The Helicobacter Pylori Vacuolating
Toxin P55 Domain
Length = 457
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 14/99 (14%)
Query: 4 ATMEVGAVAAMRFVKD------------GIRAARLVMQHTEHTLLAGEKASAFAIAMGLP 51
AT+ VG AAM F D I +A+ ++++TEH LL + ++ G
Sbjct: 298 ATLNVGNAAAMMFNNDIDSATGFYKPLIKINSAQDLIKNTEHVLLKAKIIGYGNVSTGTN 357
Query: 52 GPANLSSAESMDKWTKWRENGCQPN--FWKNVVPVDGCG 88
G +N++ E + N + + +N + CG
Sbjct: 358 GISNVNLEEQFKERLALYNNNNRMDTCVVRNTDDIKACG 396
>pdb|1YR6|A Chain A, Pab0955 Crystal Structure : A Gtpase In Apo Form From
Pyrococcus Abyssi
pdb|1YR7|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gtp-Gamma-S Bound
Form From Pyrococcus Abyssi
pdb|1YR8|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gtp Bound Form
From Pyrococcus Abyssi
pdb|1YR9|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Po4 Bound
Form From Pyrococcus Abyssi
pdb|1YRA|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp Bound Form
From Pyrococcus Abyssi
pdb|1YRA|B Chain B, Pab0955 Crystal Structure : A Gtpase In Gdp Bound Form
From Pyrococcus Abyssi
pdb|1YRB|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi
pdb|1YRB|B Chain B, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi
pdb|2OXR|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi (After Gtp Hydrolysis)
Length = 262
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 194 ESMRQGMGPELAAKDAISRIARKFPDFVGAVVAINKNGEHA 234
E MR+G GP A ++ R+ KF +++ ++ + K ++
Sbjct: 72 EIMREGYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYV 112
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKT|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKV|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
Length = 212
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Query: 185 RFLPCYQTVESMRQGMGPELAAKDAISRIARKFPDFVGAVVAINKNGE 232
R L C+QT S+ G+ +S + + FPD + A +A++ N E
Sbjct: 37 RMLECFQTTWSVNNGID--------VSELLKDFPDELRADIAMHLNKE 76
>pdb|1ZSW|A Chain A, Crystal Structure Of Bacillus Cereus Metallo Protein From
Glyoxalase Family
Length = 338
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 22 RAARLVMQHTEHTLLAGEKASAFAIAMGLPGPANLSSAESMDKWTKWREN 71
R + ++H+E T A A F A GL +S+ E ++ W W ++
Sbjct: 121 RFEKFDVKHSEMTTYANRPALQFEDAEGLRLVLLVSNGEKVEHWETWEKS 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,287,962
Number of Sequences: 62578
Number of extensions: 353892
Number of successful extensions: 878
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 820
Number of HSP's gapped (non-prelim): 52
length of query: 261
length of database: 14,973,337
effective HSP length: 97
effective length of query: 164
effective length of database: 8,903,271
effective search space: 1460136444
effective search space used: 1460136444
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)