Query 024895
Match_columns 261
No_of_seqs 148 out of 992
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 08:16:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024895.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024895hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03023 Expansin-like B1; Pro 100.0 4.7E-69 1E-73 478.5 27.5 237 3-243 8-247 (247)
2 PLN00193 expansin-A; Provision 100.0 5.5E-62 1.2E-66 435.3 26.4 209 19-242 27-256 (256)
3 PLN00050 expansin A; Provision 100.0 2.7E-61 5.8E-66 429.2 25.3 208 19-242 22-247 (247)
4 COG4305 Endoglucanase C-termin 100.0 4.5E-30 9.8E-35 215.1 18.9 194 22-244 30-232 (232)
5 PLN03024 Putative EG45-like do 100.0 2.2E-28 4.8E-33 197.9 13.4 99 22-134 21-125 (125)
6 PLN00115 pollen allergen group 99.9 1E-24 2.3E-29 174.5 11.8 92 142-242 24-118 (118)
7 PF01357 Pollen_allerg_1: Poll 99.9 8.1E-24 1.7E-28 159.8 10.8 81 144-227 1-82 (82)
8 smart00837 DPBB_1 Rare lipopro 99.9 9.3E-23 2E-27 155.6 6.9 71 55-132 1-87 (87)
9 PF03330 DPBB_1: Rare lipoprot 99.8 5.9E-19 1.3E-23 131.5 5.8 71 55-132 1-78 (78)
10 PF00967 Barwin: Barwin family 98.9 7.9E-10 1.7E-14 87.4 3.5 64 65-137 56-119 (119)
11 PF07249 Cerato-platanin: Cera 98.1 1.7E-05 3.6E-10 63.9 8.9 69 54-136 44-113 (119)
12 TIGR00413 rlpA rare lipoprotei 97.9 0.00018 3.9E-09 63.0 10.8 92 25-140 1-96 (208)
13 COG0797 RlpA Lipoproteins [Cel 97.6 0.00046 9.9E-09 61.4 9.7 58 70-138 120-178 (233)
14 PRK10672 rare lipoprotein A; P 97.2 0.0033 7.1E-08 59.5 11.0 90 23-135 79-171 (361)
15 PF02015 Glyco_hydro_45: Glyco 89.1 0.25 5.5E-06 43.2 2.1 41 67-108 82-123 (201)
16 PF03404 Mo-co_dimer: Mo-co ox 78.1 4.3 9.3E-05 33.1 4.7 22 167-188 38-60 (131)
17 cd02110 SO_family_Moco_dimer S 73.5 9.1 0.0002 35.7 6.2 52 166-218 233-292 (317)
18 PLN00177 sulfite oxidase; Prov 52.7 33 0.00072 33.1 5.9 23 166-188 293-315 (393)
19 cd02114 bact_SorA_Moco sulfite 51.1 46 0.001 31.8 6.5 51 167-218 286-344 (367)
20 PF12863 DUF3821: Domain of un 50.3 78 0.0017 28.0 7.3 52 100-172 47-98 (209)
21 cd02113 bact_SoxC_Moco bacteri 50.0 43 0.00094 31.5 6.0 23 167-189 236-258 (326)
22 cd02111 eukary_SO_Moco molybdo 45.3 67 0.0015 30.7 6.6 24 166-189 273-296 (365)
23 TIGR02588 conserved hypothetic 42.0 91 0.002 25.3 5.9 25 154-179 49-73 (122)
24 cd02112 eukary_NR_Moco molybdo 30.3 1.4E+02 0.003 28.8 6.2 21 169-189 300-320 (386)
25 PRK10564 maltose regulon perip 30.3 1.9E+02 0.0042 27.1 6.9 85 129-248 47-133 (303)
26 PF08481 GBS_Bsp-like: GBS Bsp 29.2 2.6E+02 0.0056 21.2 9.9 67 155-222 10-88 (95)
27 PF04149 DUF397: Domain of unk 28.0 1.7E+02 0.0037 20.2 4.7 44 63-114 4-51 (56)
28 PRK10301 hypothetical protein; 27.9 85 0.0018 25.2 3.7 26 123-149 96-124 (124)
29 COG2372 CopC Uncharacterized p 27.8 92 0.002 25.5 3.8 28 123-150 97-126 (127)
30 cd02859 AMPKbeta_GBD_like AMP- 25.6 2.6E+02 0.0056 20.2 5.7 48 170-223 11-62 (79)
31 PF04234 CopC: CopC domain; I 23.0 99 0.0021 23.3 3.1 15 123-137 69-83 (97)
32 TIGR02934 nifT_nitrog probable 21.2 3.3E+02 0.0072 19.8 5.5 49 158-209 13-64 (67)
33 PLN02252 nitrate reductase [NA 21.1 2.7E+02 0.0059 29.9 6.9 27 163-189 366-392 (888)
34 PF06988 NifT: NifT/FixU prote 20.3 1.4E+02 0.0031 21.5 3.2 36 170-208 25-63 (64)
No 1
>PLN03023 Expansin-like B1; Provisional
Probab=100.00 E-value=4.7e-69 Score=478.55 Aligned_cols=237 Identities=41% Similarity=0.884 Sum_probs=218.7
Q ss_pred hhhHHHHHHhhhccccCCCceeeEEEEeCCCCCC--CCCccCCCCCCCCCCCceEEEeChhccCCCCCCCceEEEEeCCC
Q 024895 3 LFLCFLFFLFSSATACDRCVHQTKVAYFSQASAL--SSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNP 80 (261)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~aT~Y~~~~g~--~~GaCGyg~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~ 80 (261)
|||++||+++. +..|++ |++++|||||++++. .+|||||+++..+.+++++||+| +||++|++||+||||+|.++
T Consensus 8 ~~~~~~~~~~~-~~~~~~-W~~a~AT~Yg~~~g~gt~gGACGYg~~~~~~~g~~~aa~s-~Lf~~G~~CGaCy~irC~~~ 84 (247)
T PLN03023 8 CFLCVIVLLPL-LCKSQD-FTYSRATYYGSPDCLGTPTGACGFGEYGRTVNGGNVAGVS-RLYRNGTGCGACYQVRCKAP 84 (247)
T ss_pred HHHHHHHHhhh-hhhcCC-cccceEEEeCCCCCCCCCCccccCCccccCCCcceeeeeh-hhhcCCchhcccEEeecCCC
Confidence 67777777777 355554 999999999998755 78999999988888889999999 99999999999999999999
Q ss_pred CcccCCCeEEEEccCCCCCCCceecCHHHHHHhhcCCCCcccccccEEEEEEEEEeeccCCCcEEEEEecCCCCCceeEE
Q 024895 81 TLCSGRGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAV 160 (261)
Q Consensus 81 ~~C~~~~v~V~VtD~Cp~~~~~~DLs~~AF~~ia~~~~~~~l~~~G~v~v~~r~V~C~~~g~ni~~~v~~gS~n~~w~av 160 (261)
++|.+++|+|+|||.||.++.|||||..||.+||.++++++|++.|+|+|+||||+|.++|.+|+|+|+++|.+|+|+++
T Consensus 85 ~~C~~~~v~V~iTd~~~~~~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRVpC~~~G~~i~F~V~~~s~~p~yl~v 164 (247)
T PLN03023 85 NLCSDDGVNVVVTDYGEGDKTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPCRYAGYNLFFKVHEHSRFPDYLAI 164 (247)
T ss_pred CccCCCCeEEEEEeCCCCCCCccccCHHHHHHHhCccccchhccCcEEEeEEEEEecccCCCceEEEEecCCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999987999999999844999999
Q ss_pred EEEEecCccCeEEEEEEEcCCCCeEEcccCcCcEEEeCCCCCcceEEEEEEEeCCCCe-EEEEeeeeCCCCCCCcEEecC
Q 024895 161 KVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTSGYDGK-WIWAKNVLPADWKPGMIYNSG 239 (261)
Q Consensus 161 ~v~n~gg~~~I~sVeV~~~g~~~W~~m~r~~g~~W~~~~~~~gpl~~Rvt~Ts~~~G~-~vv~~~vip~~~~~g~~y~t~ 239 (261)
+|.|++|.++|++|||+++++..|++|+|+||++|+++.+++|||+||+++|. .+|+ +|+++||||++|++|++|++.
T Consensus 165 lv~~vgG~GdI~~V~Ik~~~~~~W~~M~rnwGa~W~~~~~l~Gp~slrf~v~~-~~g~~~vva~nViPa~Wk~G~TY~s~ 243 (247)
T PLN03023 165 VMLYQAGQNDILAVEIWQEDCKEWRGMRKAYGAVWDMPNPPKGPITLRFQVSG-SAGQTWVQAKNVIPSDWKAGVAYDSN 243 (247)
T ss_pred EEEEcCCCccEEEEEEEecCCCCceECccCCcceeEcCCCCCCceeEEEEEEe-CCCcEEEEECceeCCCCCCCCEEecc
Confidence 99999999999999999987789999999999999999999999999998877 5664 589999999999999999999
Q ss_pred cccc
Q 024895 240 VQIT 243 (261)
Q Consensus 240 ~QF~ 243 (261)
+||+
T Consensus 244 vq~~ 247 (247)
T PLN03023 244 IQLD 247 (247)
T ss_pred cccC
Confidence 9995
No 2
>PLN00193 expansin-A; Provisional
Probab=100.00 E-value=5.5e-62 Score=435.25 Aligned_cols=209 Identities=26% Similarity=0.550 Sum_probs=191.2
Q ss_pred CCCceeeEEEEeCCCCCC--CCCccCCCCCCCCCCCceEEEeChhccCCCCCCCceEEEEeC---CCCcccCC-CeEEEE
Q 024895 19 DRCVHQTKVAYFSQASAL--SSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCK---NPTLCSGR-GTRVIL 92 (261)
Q Consensus 19 ~~~~~~g~aT~Y~~~~g~--~~GaCGyg~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~V~c~---~~~~C~~~-~v~V~V 92 (261)
..+|+.|+|||||++++. .+|||||+++...+++.++||+|+++|++|++||+||||+|. ++++|.++ +|+|+|
T Consensus 27 ~~~W~~a~AT~Yg~~d~~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyev~C~~~~~~~~C~~g~sV~Vt~ 106 (256)
T PLN00193 27 PSGWTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIKGASVTITA 106 (256)
T ss_pred CCCceeeEEEEcCCCCCCCCCCcccCCCCccccCCCceeeecCHhHccCCccccCeEEEECCCCCCCccccCCCeEEEEE
Confidence 446999999999987653 789999999888888999999999999999999999999994 56789655 799999
Q ss_pred ccCCCC--------------CCCceecCHHHHHHhhcCCCCcccccccEEEEEEEEEeeccCCCcEEEEEecCCCCCcee
Q 024895 93 TDLNHS--------------NQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYL 158 (261)
Q Consensus 93 tD~Cp~--------------~~~~~DLs~~AF~~ia~~~~~~~l~~~G~v~v~~r~V~C~~~g~ni~~~v~~gS~n~~w~ 158 (261)
||+||. ++.|||||+.||.+||. ++.|+++|+||||+|+++| +|+|++++ |+||+
T Consensus 107 td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~-------~~~Giv~V~yrRVpC~~~G-~i~f~v~g---n~y~~ 175 (256)
T PLN00193 107 TNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGI-------YRGGIVPVLFQRVPCKKHG-GVRFTING---RDYFE 175 (256)
T ss_pred ecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhh-------hcCCeEeEEEEEeccccCC-CcEEEEcC---CccEE
Confidence 999996 46899999999999998 7899999999999999998 99999983 68999
Q ss_pred EEEEEEecCccCeEEEEEEEcCCCCeEEcccCcCcEEEeCCCCCc-ceEEEEEEEeCCCCeEEEEeeeeCCCCCCCcEEe
Q 024895 159 AVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNG-ALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYN 237 (261)
Q Consensus 159 av~v~n~gg~~~I~sVeV~~~g~~~W~~m~r~~g~~W~~~~~~~g-pl~~Rvt~Ts~~~G~~vv~~~vip~~~~~g~~y~ 237 (261)
+++|.|++|.++|++|+|++.+ ..|++|+|+||++|+++.++.+ ||+|||| + .+|++++..||||++|++|++|+
T Consensus 176 ~vlv~nv~G~gdV~~v~Ik~~~-~~W~~M~R~wGa~W~~~~~l~g~plsfRvt--s-~~G~~~~~~~viPa~W~~G~ty~ 251 (256)
T PLN00193 176 LVLISNVGGAGSIQSVSIKGSK-TGWMAMSRNWGANWQSNAYLDGQSLSFKVT--T-TDGQTRFFLNVVPANWGFGQTFS 251 (256)
T ss_pred EEEEEEeCCCccEEEEEEecCC-CCeeECcccccceeEecCCCCCCCEEEEEE--E-cCCeEEEECceeCCCCCCCCeEe
Confidence 9999999999999999999865 4899999999999999987765 9999995 5 67999999999999999999999
Q ss_pred cCccc
Q 024895 238 SGVQI 242 (261)
Q Consensus 238 t~~QF 242 (261)
+.+||
T Consensus 252 s~vqf 256 (256)
T PLN00193 252 SSVQF 256 (256)
T ss_pred cCccC
Confidence 99998
No 3
>PLN00050 expansin A; Provisional
Probab=100.00 E-value=2.7e-61 Score=429.24 Aligned_cols=208 Identities=29% Similarity=0.584 Sum_probs=190.1
Q ss_pred CCCceeeEEEEeCCCCCC--CCCccCCCCCCCCCCCceEEEeChhccCCCCCCCceEEEEeCCC-CcccCCCeEEEEccC
Q 024895 19 DRCVHQTKVAYFSQASAL--SSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNP-TLCSGRGTRVILTDL 95 (261)
Q Consensus 19 ~~~~~~g~aT~Y~~~~g~--~~GaCGyg~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~-~~C~~~~v~V~VtD~ 95 (261)
..+|..++|||||++++. .+|||||+++..++++.++||+|+.+|++|++||+||||+|.+. .+|.+++|+|+|||+
T Consensus 22 ~~~W~~a~AT~Yg~~dg~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyeV~C~~~~~~C~~gsV~V~itd~ 101 (247)
T PLN00050 22 GSGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDNIWCLPGSIIITATNF 101 (247)
T ss_pred CCCccccEEEEcCCCCCCCCCCcccCCCCccccCCCceeeeccHhHccCCccccceEEEEcCCCCcccCCCcEEEEEecC
Confidence 456999999999987654 68999999988888899999999999999999999999999653 579888999999999
Q ss_pred CCC--------------CCCceecCHHHHHHhhcCCCCcccccccEEEEEEEEEeeccCCCcEEEEEecCCCCCceeEEE
Q 024895 96 NHS--------------NQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVK 161 (261)
Q Consensus 96 Cp~--------------~~~~~DLs~~AF~~ia~~~~~~~l~~~G~v~v~~r~V~C~~~g~ni~~~v~~gS~n~~w~av~ 161 (261)
||+ ++.|||||+.||.+||. ++.|+|+|+||||+|+++| ||+|+++++ +||++++
T Consensus 102 CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~-------~~aGii~V~yRRVpC~~~G-~i~f~v~g~---sy~~~vl 170 (247)
T PLN00050 102 CPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQ-------YKAGIVPVQYRRVACRKSG-GIRFTINGH---SYFNLVL 170 (247)
T ss_pred CCCCcCcCccCCCcCCCCCcccccCHHHHHHHhh-------hcCCeeeeEEEEecCcCCC-CeEEEEcCC---ceeEEEE
Confidence 996 56899999999999999 7899999999999999998 999999864 4999999
Q ss_pred EEEecCccCeEEEEEEEcCCCCeEEcccCcCcEEEeCCCCCc-ceEEEEEEEeCCCCeEEEEeeeeCCCCCCCcEEecCc
Q 024895 162 VLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNG-ALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNSGV 240 (261)
Q Consensus 162 v~n~gg~~~I~sVeV~~~g~~~W~~m~r~~g~~W~~~~~~~g-pl~~Rvt~Ts~~~G~~vv~~~vip~~~~~g~~y~t~~ 240 (261)
|.|++|.++|++|+|++.+ ..|++|+|+||++|++++++.+ ||+|||| + .+|++++..||||++|++|++|++.
T Consensus 171 v~nv~G~gdi~~V~ikg~~-~~W~~M~R~wGa~W~~~~~l~g~~lsfRvt--~-~~G~~~~~~~V~Pa~W~~G~ty~~~- 245 (247)
T PLN00050 171 ITNVGGAGDIVAVSIKGSK-SNWQAMSRNWGQNWQSNSYLNGQALSFKVT--T-SDGRTVISNNAAPSNWAFGQTYTGM- 245 (247)
T ss_pred EEEcCCCccEEEEEEecCC-CCeeECccccCceeEccCCCCCCcEEEEEE--e-cCCcEEEECceeCCCCCCCCeEecC-
Confidence 9999999999999999865 5899999999999999987765 9999995 5 6799999999999999999999994
Q ss_pred cc
Q 024895 241 QI 242 (261)
Q Consensus 241 QF 242 (261)
||
T Consensus 246 ~f 247 (247)
T PLN00050 246 QF 247 (247)
T ss_pred cC
Confidence 88
No 4
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=99.97 E-value=4.5e-30 Score=215.08 Aligned_cols=194 Identities=23% Similarity=0.317 Sum_probs=163.6
Q ss_pred ceeeEEEEeCCCCCCCCCccCCCCCCCCCCCceEEEeChhccCCC----CCCCceEEEEeCCCCcccCCCeEEEEccCCC
Q 024895 22 VHQTKVAYFSQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDG----AGCGACFQMRCKNPTLCSGRGTRVILTDLNH 97 (261)
Q Consensus 22 ~~~g~aT~Y~~~~g~~~GaCGyg~~~~~~~~~~~aA~s~~~~~~g----~~CG~C~~V~c~~~~~C~~~~v~V~VtD~Cp 97 (261)
.+.|.|||-+.++ .+||=-.... +....|.|+|+.+-|-| +.-|+.++|. +| ++..||.|||+-|
T Consensus 30 ~f~G~ATyTgsGY--sGGAflLDPI---~sd~eITAlNPaqlNlGGipAAmAGaYLrVq--GP----KG~TTVYVTDlYP 98 (232)
T COG4305 30 LFEGYATYTGSGY--SGGAFLLDPI---PSDMEITALNPAQLNLGGIPAAMAGAYLRVQ--GP----KGKTTVYVTDLYP 98 (232)
T ss_pred ccceeEEEecccc--cCceEEecCc---CCcceeeecCHHHcccCCchhhhccceEEEE--CC----CCceEEEEecccc
Confidence 5799999988765 6888755433 33567999999888755 6899999998 44 3458999999999
Q ss_pred C-CCCceecCHHHHHHhhcCCCCcccccccEEEEEEEEEeeccCCCcEEEEEecCCCCCceeEEEEEEecCccCeEEEEE
Q 024895 98 S-NQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDV 176 (261)
Q Consensus 98 ~-~~~~~DLs~~AF~~ia~~~~~~~l~~~G~v~v~~r~V~C~~~g~ni~~~v~~gS~n~~w~av~v~n~gg~~~I~sVeV 176 (261)
+ ..+.||||+.||.+|++ +..|+++|+||.|+-|.+| |+.+++|||| +.||.+|||+|| +.+|.++|+
T Consensus 99 egasGaLDLSpNAFakIGn-------m~qGrIpvqWrvv~aPvtG-N~~YRiKeGS-s~WWAAIQVRnH--~yPV~KlE~ 167 (232)
T COG4305 99 EGASGALDLSPNAFAKIGN-------MKQGRIPVQWRVVKAPVTG-NFTYRIKEGS-SRWWAAIQVRNH--KYPVMKLEY 167 (232)
T ss_pred cccccccccChHHHhhhcc-------hhcCccceeEEEecccccc-cEEEEEecCC-ccceeeeeeecc--cCceEEEEE
Confidence 8 67899999999999999 8999999999999999998 9999999999 899999999987 799999999
Q ss_pred EEcCCCCeEEcccCcCcEEEeCCCCCcceEEEEEEEeCCCCeEEEEeeeeCCCCC--CCcEE--ecCccccc
Q 024895 177 AQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWK--PGMIY--NSGVQITD 244 (261)
Q Consensus 177 ~~~g~~~W~~m~r~~g~~W~~~~~~~gpl~~Rvt~Ts~~~G~~vv~~~vip~~~~--~g~~y--~t~~QF~~ 244 (261)
.+. ++|+.|.+.+||+|.-.+...+||++|+ |+ +.|+.++.. +|.-.+ ..+.| .+.+||++
T Consensus 168 ~qd--g~WinlpK~dYNhFVgT~LG~~pL~~Rm--TD-IRG~~l~Dt--lP~Lpk~asSKaY~V~G~VQFsE 232 (232)
T COG4305 168 EQD--GKWINLPKMDYNHFVGTNLGTGPLKVRM--TD-IRGKVLKDT--LPKLPKSASSKAYTVPGHVQFSE 232 (232)
T ss_pred ecC--CeEeeccccccceeeccccCCCceEEEE--ee-cccceeecc--cccccccccCCceeecceeecCC
Confidence 976 5999999999999988888899999999 68 999988754 554333 22334 36888874
No 5
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=99.96 E-value=2.2e-28 Score=197.89 Aligned_cols=99 Identities=26% Similarity=0.565 Sum_probs=87.0
Q ss_pred ceeeEEEEeCCCCCCCCCccCCCCCCCCCCCceEEEeChhccCCCCCCCceEEEEeCCC-----CcccCCCeEEEEccCC
Q 024895 22 VHQTKVAYFSQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNP-----TLCSGRGTRVILTDLN 96 (261)
Q Consensus 22 ~~~g~aT~Y~~~~g~~~GaCGyg~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~-----~~C~~~~v~V~VtD~C 96 (261)
..+|+||||+++ ..||| |++ ..++.++||+|+.+|++|+.||+||||+|.++ .+|++++|+|+|+|+|
T Consensus 21 ~~~G~AT~Y~~~---~~gAC-~~~---~~~g~~iaAls~~lf~~G~~CG~c~~V~C~~~~~~~~~~c~gksV~V~VtD~C 93 (125)
T PLN03024 21 ATPGIATFYTSY---TPSAC-YRG---TSFGVMIAAASDSLWNNGRVCGKMFTVKCKGPRNAVPHPCTGKSVTVKIVDHC 93 (125)
T ss_pred ccceEEEEeCCC---CCccc-cCC---CCCCCEeEEeCHHHcCCCcccCceEEEEECCCCccccccccCCeEEEEEEcCC
Confidence 457999999875 57999 444 24678999999999999999999999999765 3799899999999999
Q ss_pred CC-CCCceecCHHHHHHhhcCCCCcccccccEEEEEEEE
Q 024895 97 HS-NQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKR 134 (261)
Q Consensus 97 p~-~~~~~DLs~~AF~~ia~~~~~~~l~~~G~v~v~~r~ 134 (261)
|+ ++.|||||++||.+||+ .+.|+++|+|.+
T Consensus 94 P~~C~~~~DLS~~AF~~iA~-------~~aG~v~V~y~~ 125 (125)
T PLN03024 94 PSGCASTLDLSREAFAQIAN-------PVAGIINIDYIP 125 (125)
T ss_pred CCCCCCceEcCHHHHHHhcC-------ccCCEEEEEEeC
Confidence 94 77899999999999999 678999999963
No 6
>PLN00115 pollen allergen group 3; Provisional
Probab=99.92 E-value=1e-24 Score=174.48 Aligned_cols=92 Identities=18% Similarity=0.485 Sum_probs=83.7
Q ss_pred CcEEEEEecCCCCCceeEEEEEEecCccCeEEEEEEEcCCCCeE-EcccCcCcEEEeCC--CCCcceEEEEEEEeCCCCe
Q 024895 142 QNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWG-YMSRNYGAVWDTSR--VPNGALQFRFVVTSGYDGK 218 (261)
Q Consensus 142 ~ni~~~v~~gS~n~~w~av~v~n~gg~~~I~sVeV~~~g~~~W~-~m~r~~g~~W~~~~--~~~gpl~~Rvt~Ts~~~G~ 218 (261)
.+|+|+|+++| |++||++++ | ++|.+|||+++++..|+ +|+|+||++|++++ +++|||+||++ + .+|+
T Consensus 24 ~~v~F~V~~gS-np~yL~ll~-~----~dI~~V~Ik~~g~~~W~~~M~rswGavW~~~s~~pl~GPlS~R~t--~-~~G~ 94 (118)
T PLN00115 24 TEVTFKVGKGS-SSTSLELVT-N----VAISEVEIKEKGAKDWVDDLKESSTNTWTLKSKAPLKGPFSVRFL--V-KGGG 94 (118)
T ss_pred CceEEEECCCC-CcceEEEEE-e----CCEEEEEEeecCCCcccCccccCccceeEecCCCCCCCceEEEEE--E-eCCC
Confidence 58999999999 999998765 4 36999999999888999 99999999999875 68999999995 5 6799
Q ss_pred EEEEeeeeCCCCCCCcEEecCccc
Q 024895 219 WIWAKNVLPADWKPGMIYNSGVQI 242 (261)
Q Consensus 219 ~vv~~~vip~~~~~g~~y~t~~QF 242 (261)
+++.+||||++|++|++|++++||
T Consensus 95 ~~va~nViPa~Wk~G~tY~s~vq~ 118 (118)
T PLN00115 95 YRVVDDVIPESFKAGSVYKTGIQV 118 (118)
T ss_pred EEEECceECCCCCCCCEEeccccC
Confidence 999999999999999999999998
No 7
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=99.91 E-value=8.1e-24 Score=159.82 Aligned_cols=81 Identities=43% Similarity=0.736 Sum_probs=68.1
Q ss_pred EEEEEecCCCCCceeEEEEEEecCccCeEEEEEEEcCCCCeEEcccCcCcEEEeC-CCCCcceEEEEEEEeCCCCeEEEE
Q 024895 144 LAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTS-RVPNGALQFRFVVTSGYDGKWIWA 222 (261)
Q Consensus 144 i~~~v~~gS~n~~w~av~v~n~gg~~~I~sVeV~~~g~~~W~~m~r~~g~~W~~~-~~~~gpl~~Rvt~Ts~~~G~~vv~ 222 (261)
|+|+|+++| |+|||+|+|.|++|.++|++|||+++++.+|++|+|+||++|+++ +++++||+|||| +..+|+++++
T Consensus 1 v~f~V~~gS-~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~~m~r~wGa~W~~~~~~~~~pls~Rvt--s~~~G~~vv~ 77 (82)
T PF01357_consen 1 VRFTVKGGS-NPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWIPMKRSWGAVWQIDSNPPGGPLSFRVT--SGDSGQTVVA 77 (82)
T ss_dssp EEEEE-TT--BTTEEEEEEEECCTTS-EEEEEEEETTSSS-EE-EEECTTEEEEE-SS--SSEEEEEE--ETTTSEEEEE
T ss_pred CEEEECCCC-CCcEEEEEEEEcCCCccEEEEEEEeCCCCCceEeecCcCceEEECCCCcCCCEEEEEE--EcCCCeEEEE
Confidence 689999999 999999999999999999999999999989999999999999998 788999999995 5244999999
Q ss_pred eeeeC
Q 024895 223 KNVLP 227 (261)
Q Consensus 223 ~~vip 227 (261)
+||||
T Consensus 78 ~nViP 82 (82)
T PF01357_consen 78 DNVIP 82 (82)
T ss_dssp EEEE-
T ss_pred ecccC
Confidence 99998
No 8
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.88 E-value=9.3e-23 Score=155.60 Aligned_cols=71 Identities=32% Similarity=0.659 Sum_probs=64.4
Q ss_pred EEEeChhccCCCCCCCceEEEEeC-CCCcccCC-CeEEEEccCCCC--------------CCCceecCHHHHHHhhcCCC
Q 024895 55 LAAGVPSLYKDGAGCGACFQMRCK-NPTLCSGR-GTRVILTDLNHS--------------NQTDFVISSRAFMALSNQGK 118 (261)
Q Consensus 55 ~aA~s~~~~~~g~~CG~C~~V~c~-~~~~C~~~-~v~V~VtD~Cp~--------------~~~~~DLs~~AF~~ia~~~~ 118 (261)
+||+|+.||++|++||+||||+|. +++.|.++ +|+|+|||+||+ ++.|||||+.||.+||.
T Consensus 1 taA~s~~lf~~G~~CG~Cy~v~C~~~~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA~--- 77 (87)
T smart00837 1 TAALSTALFNNGASCGACYEIMCVDSPKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIAQ--- 77 (87)
T ss_pred CcccCHHHccCCccccceEEEEeCCCCCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHhh---
Confidence 489999999999999999999996 56689764 799999999996 36899999999999999
Q ss_pred CcccccccEEEEEE
Q 024895 119 GQDILKLGVVDVEY 132 (261)
Q Consensus 119 ~~~l~~~G~v~v~~ 132 (261)
++.|+|+|+|
T Consensus 78 ----~~~Gvi~v~y 87 (87)
T smart00837 78 ----YKAGIVPVKY 87 (87)
T ss_pred ----hcCCEEeeEC
Confidence 7899999987
No 9
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.76 E-value=5.9e-19 Score=131.55 Aligned_cols=71 Identities=31% Similarity=0.627 Sum_probs=60.6
Q ss_pred EEEeChhccCCCCCCCceEEEEeC--CCCc--ccC--CCeEEEEccCCCC-CCCceecCHHHHHHhhcCCCCcccccccE
Q 024895 55 LAAGVPSLYKDGAGCGACFQMRCK--NPTL--CSG--RGTRVILTDLNHS-NQTDFVISSRAFMALSNQGKGQDILKLGV 127 (261)
Q Consensus 55 ~aA~s~~~~~~g~~CG~C~~V~c~--~~~~--C~~--~~v~V~VtD~Cp~-~~~~~DLs~~AF~~ia~~~~~~~l~~~G~ 127 (261)
+||++..+|++|.+||+||+++|. .+.. |.. ++|+|+|+|+||+ ++.|||||+.||++|+. ++.|+
T Consensus 1 t~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~Cp~~~~~~lDLS~~aF~~la~-------~~~G~ 73 (78)
T PF03330_consen 1 TAAGSATWYDNGTACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRCPGCPPNHLDLSPAAFKALAD-------PDAGV 73 (78)
T ss_dssp EEEE-HHHHGGGTTTT-EEEEEE---SSTT--BESEECEEEEEEEEE-TTSSSSEEEEEHHHHHHTBS-------TTCSS
T ss_pred CeEEEhhhcCCCCcCCCeeeccccccCCccceEEecCCeEEEEEEccCCCCcCCEEEeCHHHHHHhCC-------CCceE
Confidence 589999999999999999999993 3333 766 8899999999998 78899999999999999 68999
Q ss_pred EEEEE
Q 024895 128 VDVEY 132 (261)
Q Consensus 128 v~v~~ 132 (261)
++|+|
T Consensus 74 i~V~w 78 (78)
T PF03330_consen 74 IPVEW 78 (78)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99998
No 10
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=98.92 E-value=7.9e-10 Score=87.37 Aligned_cols=64 Identities=22% Similarity=0.508 Sum_probs=45.8
Q ss_pred CCCCCCceEEEEeCCCCcccCCCeEEEEccCCCCCCCceecCHHHHHHhhcCCCCcccccccEEEEEEEEEee
Q 024895 65 DGAGCGACFQMRCKNPTLCSGRGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPC 137 (261)
Q Consensus 65 ~g~~CG~C~~V~c~~~~~C~~~~v~V~VtD~Cp~~~~~~DLs~~AF~~ia~~~~~~~l~~~G~v~v~~r~V~C 137 (261)
+-..||+|++|+-+. ++..++|+|+|+|+.+ +|||++.+|.+|...|.+ ...|.+.|.|++|+|
T Consensus 56 gq~~CGkClrVTNt~----tga~~~~RIVDqCsnG--GLDld~~vF~~iDtdG~G---~~~Ghl~V~y~fV~C 119 (119)
T PF00967_consen 56 GQDSCGKCLRVTNTA----TGAQVTVRIVDQCSNG--GLDLDPTVFNQIDTDGQG---YAQGHLIVDYEFVDC 119 (119)
T ss_dssp SGGGTT-EEEEE-TT----T--EEEEEEEEE-SSS--SEES-SSSHHHH-SSSHH---HHHTEEEEEEEEE--
T ss_pred CcccccceEEEEecC----CCcEEEEEEEEcCCCC--CcccChhHHhhhccCCcc---cccceEEEEEEEEcC
Confidence 347899999999543 2456999999999986 999999999999764422 578999999999998
No 11
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=98.14 E-value=1.7e-05 Score=63.92 Aligned_cols=69 Identities=28% Similarity=0.524 Sum_probs=48.6
Q ss_pred eEEEeChh-ccCCCCCCCceEEEEeCCCCcccCCCeEEEEccCCCCCCCceecCHHHHHHhhcCCCCcccccccEEEEEE
Q 024895 54 HLAAGVPS-LYKDGAGCGACFQMRCKNPTLCSGRGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEY 132 (261)
Q Consensus 54 ~~aA~s~~-~~~~g~~CG~C~~V~c~~~~~C~~~~v~V~VtD~Cp~~~~~~DLs~~AF~~ia~~~~~~~l~~~G~v~v~~ 132 (261)
+|.+.... -| |...||.|+|++-. ++++.|...|.-++ .|+|+.+||+.|.+. ++ ...|+|+++|
T Consensus 44 ~IGg~~~V~gW-nS~~CGtC~~lty~------g~si~vlaID~a~~---gfnis~~A~n~LT~g-~a---~~lG~V~a~~ 109 (119)
T PF07249_consen 44 YIGGAPAVAGW-NSPNCGTCWKLTYN------GRSIYVLAIDHAGG---GFNISLDAMNDLTNG-QA---VELGRVDATY 109 (119)
T ss_dssp SEEEETT--ST-T-TTTT-EEEEEET------TEEEEEEEEEE-SS---SEEE-HHHHHHHHTS--C---CCC-EEE-EE
T ss_pred eeccccccccC-CCCCCCCeEEEEEC------CeEEEEEEEecCCC---cccchHHHHHHhcCC-cc---cceeEEEEEE
Confidence 57777764 46 55899999999973 46799999998544 699999999999883 22 3569999999
Q ss_pred EEEe
Q 024895 133 KRVP 136 (261)
Q Consensus 133 r~V~ 136 (261)
++|+
T Consensus 110 ~qV~ 113 (119)
T PF07249_consen 110 TQVD 113 (119)
T ss_dssp EEE-
T ss_pred EEcC
Confidence 9996
No 12
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=97.85 E-value=0.00018 Score=62.96 Aligned_cols=92 Identities=14% Similarity=0.095 Sum_probs=68.1
Q ss_pred eEEEEeCCCC-CCCCCccCCCCCCCCCCC--ceEEEeChhccCCCCCCCceEEEEeCCCCcccCCCeEEEEccCCCC-CC
Q 024895 25 TKVAYFSQAS-ALSSGACGYGSLALSFNG--GHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGRGTRVILTDLNHS-NQ 100 (261)
Q Consensus 25 g~aT~Y~~~~-g~~~GaCGyg~~~~~~~~--~~~aA~s~~~~~~g~~CG~C~~V~c~~~~~C~~~~v~V~VtD~Cp~-~~ 100 (261)
|.|+|||..- | ...|.|- .+. .++||-. .+ ..|..++|+.... +++|+|+|.|++|. +.
T Consensus 1 G~ASwYg~~f~G-~~TAnGe------~y~~~~~tAAHk-tL-----PlgT~V~VtNl~n----grsviVrVnDRGPf~~g 63 (208)
T TIGR00413 1 GLASWYGPKFHG-RKTANGE------VYNMKALTAAHK-TL-----PFNTYVKVTNLHN----NRSVIVRINDRGPFSDD 63 (208)
T ss_pred CEEeEeCCCCCC-CcCCCCe------ecCCCccccccc-cC-----CCCCEEEEEECCC----CCEEEEEEeCCCCCCCC
Confidence 6799999742 2 2344432 222 2444433 33 7899999996542 57899999999998 66
Q ss_pred CceecCHHHHHHhhcCCCCcccccccEEEEEEEEEeeccC
Q 024895 101 TDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYK 140 (261)
Q Consensus 101 ~~~DLs~~AF~~ia~~~~~~~l~~~G~v~v~~r~V~C~~~ 140 (261)
.-+|||..|+.+|+. ...|+.+|+.+.+.....
T Consensus 64 RiIDLS~aAA~~Lg~-------~~~G~a~V~vevl~~~~~ 96 (208)
T TIGR00413 64 RIIDLSHAAAREIGL-------ISRGVGQVRIEVLHVAKN 96 (208)
T ss_pred CEEECCHHHHHHcCC-------CcCceEEEEEEEEecCCC
Confidence 799999999999998 689999999999987654
No 13
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=97.61 E-value=0.00046 Score=61.42 Aligned_cols=58 Identities=17% Similarity=0.150 Sum_probs=49.8
Q ss_pred CceEEEEeCCCCcccCCCeEEEEccCCCC-CCCceecCHHHHHHhhcCCCCcccccccEEEEEEEEEeec
Q 024895 70 GACFQMRCKNPTLCSGRGTRVILTDLNHS-NQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCE 138 (261)
Q Consensus 70 G~C~~V~c~~~~~C~~~~v~V~VtD~Cp~-~~~~~DLs~~AF~~ia~~~~~~~l~~~G~v~v~~r~V~C~ 138 (261)
|.-.+|+-.++ +++|.|+|.|++|. ..-.||||..|+++|+. .+.|+.+|+.+.+.+.
T Consensus 120 ~t~v~VtNl~N----grsvvVRINDRGPf~~gRiIDlS~aAA~~l~~-------~~~G~a~V~i~~l~~~ 178 (233)
T COG0797 120 PTYVRVTNLDN----GRSVVVRINDRGPFVSGRIIDLSKAAADKLGM-------IRSGVAKVRIEVLGVA 178 (233)
T ss_pred CCEEEEEEccC----CcEEEEEEeCCCCCCCCcEeEcCHHHHHHhCC-------ccCceEEEEEEEeccc
Confidence 56778987653 67899999999998 56689999999999999 6889999999999865
No 14
>PRK10672 rare lipoprotein A; Provisional
Probab=97.24 E-value=0.0033 Score=59.47 Aligned_cols=90 Identities=17% Similarity=0.040 Sum_probs=61.5
Q ss_pred eeeEEEEeCCCCCCCCCccCCCCCCCCCCC--ceEEEeChhccCCCCCCCceEEEEeCCCCcccCCCeEEEEccCCCC-C
Q 024895 23 HQTKVAYFSQASALSSGACGYGSLALSFNG--GHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGRGTRVILTDLNHS-N 99 (261)
Q Consensus 23 ~~g~aT~Y~~~~g~~~GaCGyg~~~~~~~~--~~~aA~s~~~~~~g~~CG~C~~V~c~~~~~C~~~~v~V~VtD~Cp~-~ 99 (261)
..|.|+|||....-..-|-| +.+. .++||-. .| .-|..++|+..+. +++|+|+|.|++|. +
T Consensus 79 ~~G~ASwYg~~f~G~~TA~G------e~~~~~~~tAAH~-tL-----Plps~vrVtNl~n----grsvvVrVnDRGP~~~ 142 (361)
T PRK10672 79 QAGLAAIYDAEAGSNLTASG------ERFDPNALTAAHP-TL-----PIPSYVRVTNLAN----GRMIVVRINDRGPYGP 142 (361)
T ss_pred eEEEEEEeCCccCCCcCcCc------eeecCCcCeeecc-CC-----CCCCEEEEEECCC----CcEEEEEEeCCCCCCC
Confidence 37888888865210112222 2222 2444443 32 5688899997653 67899999999998 5
Q ss_pred CCceecCHHHHHHhhcCCCCcccccccEEEEEEEEE
Q 024895 100 QTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRV 135 (261)
Q Consensus 100 ~~~~DLs~~AF~~ia~~~~~~~l~~~G~v~v~~r~V 135 (261)
..-||||..|+.+|+. ...+.|.|+.-.|
T Consensus 143 gRiiDLS~aAA~~Lg~-------~~~~~V~ve~i~v 171 (361)
T PRK10672 143 GRVIDLSRAAADRLNT-------SNNTKVRIDPIIV 171 (361)
T ss_pred CCeeEcCHHHHHHhCC-------CCCceEEEEEEee
Confidence 6689999999999998 4557788877766
No 15
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.
Probab=89.14 E-value=0.25 Score=43.22 Aligned_cols=41 Identities=17% Similarity=0.355 Sum_probs=27.8
Q ss_pred CCCCceEEEEeCCCCcccCCCeEEEEccCCCC-CCCceecCHH
Q 024895 67 AGCGACFQMRCKNPTLCSGRGTRVILTDLNHS-NQTDFVISSR 108 (261)
Q Consensus 67 ~~CG~C~~V~c~~~~~C~~~~v~V~VtD~Cp~-~~~~~DLs~~ 108 (261)
..|++|||++=++. .-.+|...|+||+.--+ ..+||||.-.
T Consensus 82 ~~Cc~Cy~LtFt~g-~l~GKkmiVQ~tNtG~dlg~n~FDl~iP 123 (201)
T PF02015_consen 82 SWCCACYELTFTSG-PLKGKKMIVQVTNTGGDLGSNQFDLAIP 123 (201)
T ss_dssp HHTT-EEEEEE-SS-TTTT-EEEEEEEEE-TTTTTTEEEEE-T
T ss_pred CcccceEEEEEcCC-CcCCCEeEEEecccCCCCCCCeEEEEeC
Confidence 67999999998752 22456799999988766 7789998654
No 16
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=78.07 E-value=4.3 Score=33.08 Aligned_cols=22 Identities=18% Similarity=0.463 Sum_probs=16.9
Q ss_pred Ccc-CeEEEEEEEcCCCCeEEcc
Q 024895 167 GQT-EMVAMDVAQVGSSNWGYMS 188 (261)
Q Consensus 167 g~~-~I~sVeV~~~g~~~W~~m~ 188 (261)
|.+ +|++|||..+++.+|++..
T Consensus 38 g~g~~I~rVEVS~DgG~tW~~A~ 60 (131)
T PF03404_consen 38 GGGRGIARVEVSTDGGKTWQEAT 60 (131)
T ss_dssp STT--EEEEEEESSTTSSEEE-E
T ss_pred CCCcceEEEEEEeCCCCCcEEeE
Confidence 345 8999999999988998755
No 17
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).
Probab=73.55 E-value=9.1 Score=35.74 Aligned_cols=52 Identities=17% Similarity=0.335 Sum_probs=31.4
Q ss_pred cCccCeEEEEEEEcCCCCeEEcccCcCc-------EEEeCC-CCCcceEEEEEEEeCCCCe
Q 024895 166 GGQTEMVAMDVAQVGSSNWGYMSRNYGA-------VWDTSR-VPNGALQFRFVVTSGYDGK 218 (261)
Q Consensus 166 gg~~~I~sVeV~~~g~~~W~~m~r~~g~-------~W~~~~-~~~gpl~~Rvt~Ts~~~G~ 218 (261)
+|...|++|||+.+++.+|++..-.... .|.+.- +..|...|.+.-++ ..|.
T Consensus 233 ~g~~~I~rVEvS~DgG~tW~~A~l~~~~~~~~~W~~W~~~~~~~~G~~~l~vRA~D-~~g~ 292 (317)
T cd02110 233 SGGRGIRRVEVSLDGGRTWQEARLEGPLAGPRAWRQWELDWDLPPGEYELVARATD-STGN 292 (317)
T ss_pred cCCCCEEEEEEEeCCCCcceEeEccCCcCCCCEEEEEEEEEEcCCCcEEEEEEEEC-CCCC
Confidence 3446799999999998899976542211 455552 23455444443356 5553
No 18
>PLN00177 sulfite oxidase; Provisional
Probab=52.70 E-value=33 Score=33.14 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=18.6
Q ss_pred cCccCeEEEEEEEcCCCCeEEcc
Q 024895 166 GGQTEMVAMDVAQVGSSNWGYMS 188 (261)
Q Consensus 166 gg~~~I~sVeV~~~g~~~W~~m~ 188 (261)
||..+|++|||..+++.+|+...
T Consensus 293 ggg~~I~rVEVS~DgG~tW~~A~ 315 (393)
T PLN00177 293 GGGRGIERVDISVDGGKTWVEAS 315 (393)
T ss_pred CCCccEEEEEEEcCCCCCceeee
Confidence 34347999999999988999664
No 19
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=51.10 E-value=46 Score=31.80 Aligned_cols=51 Identities=24% Similarity=0.486 Sum_probs=31.3
Q ss_pred CccCeEEEEEEEcCCCCeEEcc--cCcCc----EEEeC-CC-CCcceEEEEEEEeCCCCe
Q 024895 167 GQTEMVAMDVAQVGSSNWGYMS--RNYGA----VWDTS-RV-PNGALQFRFVVTSGYDGK 218 (261)
Q Consensus 167 g~~~I~sVeV~~~g~~~W~~m~--r~~g~----~W~~~-~~-~~gpl~~Rvt~Ts~~~G~ 218 (261)
|...|++|||..+++.+|++.. +..+. .|++. .+ ..|.+.|.+.-|+ ..|.
T Consensus 286 G~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~W~~~~~~~~~G~~~l~~RA~D-~~G~ 344 (367)
T cd02114 286 GGSGIRRVDVSADGGDSWTQATLGPDLGRFSFRGWKLTLDGVKKGPLTLMVRATN-NDGQ 344 (367)
T ss_pred CCCCEEEEEEEeCCCCcceEeEeCCCCCCcEEEEEEEEEECCCCCcEEEEEEEEc-CCCC
Confidence 4467999999999988998754 22222 35554 22 2455555544355 5553
No 20
>PF12863 DUF3821: Domain of unknown function (DUF3821); InterPro: IPR024277 This is a domain largely confined to sequences from Methanomicrobiales. It is found in putative lipases but the function is unknown.
Probab=50.25 E-value=78 Score=28.01 Aligned_cols=52 Identities=27% Similarity=0.381 Sum_probs=35.1
Q ss_pred CCceecCHHHHHHhhcCCCCcccccccEEEEEEEEEeeccCCCcEEEEEecCCCCCceeEEEEEEecCccCeE
Q 024895 100 QTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMV 172 (261)
Q Consensus 100 ~~~~DLs~~AF~~ia~~~~~~~l~~~G~v~v~~r~V~C~~~g~ni~~~v~~gS~n~~w~av~v~n~gg~~~I~ 172 (261)
+.+|.++|.+|.. +.| .|..-+=...+ .+.|.|++-| ++|.|.+..-..+|.
T Consensus 47 p~~FyV~P~~f~~-----------~tG----~WY~~~~~~~~-~~aF~V~~Ps-----l~l~v~d~~t~~dvt 98 (209)
T PF12863_consen 47 PTNFYVSPAAFGG-----------KTG----NWYQWNGTPKG-DVAFYVQDPS-----LSLKVWDANTDKDVT 98 (209)
T ss_pred CcCEEEChHHhCC-----------ccc----ceEecCCCCCc-ceEEEEeCCc-----eEEEEEecccccccc
Confidence 6799999999974 223 34444433333 8999999987 889888764333443
No 21
>cd02113 bact_SoxC_Moco bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=49.96 E-value=43 Score=31.52 Aligned_cols=23 Identities=22% Similarity=0.396 Sum_probs=18.9
Q ss_pred CccCeEEEEEEEcCCCCeEEccc
Q 024895 167 GQTEMVAMDVAQVGSSNWGYMSR 189 (261)
Q Consensus 167 g~~~I~sVeV~~~g~~~W~~m~r 189 (261)
|.++|..|||+.+++.+|+...-
T Consensus 236 G~~~I~rVEVS~DgG~tW~~A~l 258 (326)
T cd02113 236 GRGRIRRVDVSFDGGRTWQDARL 258 (326)
T ss_pred CCCCEEEEEEEcCCCCCceECcc
Confidence 45679999999999889997543
No 22
>cd02111 eukary_SO_Moco molybdopterin binding domain of sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=45.35 E-value=67 Score=30.69 Aligned_cols=24 Identities=29% Similarity=0.576 Sum_probs=19.3
Q ss_pred cCccCeEEEEEEEcCCCCeEEccc
Q 024895 166 GGQTEMVAMDVAQVGSSNWGYMSR 189 (261)
Q Consensus 166 gg~~~I~sVeV~~~g~~~W~~m~r 189 (261)
+|...|++|||..+++.+|+...-
T Consensus 273 gg~~~I~rVEVS~DgG~tW~~A~l 296 (365)
T cd02111 273 GGGRKIVRVDVSLDGGRTWKVAEL 296 (365)
T ss_pred CCCCcEEEEEEECCCCCcceeCCc
Confidence 444579999999999889997653
No 23
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=41.98 E-value=91 Score=25.33 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=21.0
Q ss_pred CCceeEEEEEEecCccCeEEEEEEEc
Q 024895 154 KPNYLAVKVLYQGGQTEMVAMDVAQV 179 (261)
Q Consensus 154 n~~w~av~v~n~gg~~~I~sVeV~~~ 179 (261)
.+||..|.|+|.|| ...++|+|.+.
T Consensus 49 gqyyVpF~V~N~gg-~TAasV~V~ge 73 (122)
T TIGR02588 49 GQYYVPFAIHNLGG-TTAAAVNIRGE 73 (122)
T ss_pred CEEEEEEEEEeCCC-cEEEEEEEEEE
Confidence 36999999999875 57999999864
No 24
>cd02112 eukary_NR_Moco molybdopterin binding domain of eukaryotic nitrate reductase (NR). Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Eukaryotic assimilatory nitrate reductases are cytosolic homodimeric enzymes with three prosthetic groups, flavin adenine dinucleotide (FAD), cytochrome b557, and Mo cofactor, which are located in three functional domains. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=30.31 E-value=1.4e+02 Score=28.85 Aligned_cols=21 Identities=14% Similarity=0.306 Sum_probs=17.7
Q ss_pred cCeEEEEEEEcCCCCeEEccc
Q 024895 169 TEMVAMDVAQVGSSNWGYMSR 189 (261)
Q Consensus 169 ~~I~sVeV~~~g~~~W~~m~r 189 (261)
.+|++|||+.+++.+|+...-
T Consensus 300 ~~I~rVeVS~DgG~tW~~A~L 320 (386)
T cd02112 300 RRVTRVEVSLDDGKSWKLASI 320 (386)
T ss_pred CcEEEEEEEcCCCCCceeCCC
Confidence 379999999999889987643
No 25
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=30.28 E-value=1.9e+02 Score=27.06 Aligned_cols=85 Identities=18% Similarity=0.235 Sum_probs=52.3
Q ss_pred EEEEEEEeeccCCCcEEEEEecCCCCCceeEEEEEEecCccCeEEEEEEEcCCCCeEEcccCcCcEEEeCCCCCcceEEE
Q 024895 129 DVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFR 208 (261)
Q Consensus 129 ~v~~r~V~C~~~g~ni~~~v~~gS~n~~w~av~v~n~gg~~~I~sVeV~~~g~~~W~~m~r~~g~~W~~~~~~~gpl~~R 208 (261)
.+.|..|. .+. .+.+.+.+.| +.+ ...++.+.|.+.+|-.. .|+++|+
T Consensus 47 ~l~wq~l~--~~~-~~~~~L~~~s--q~~-----~f~~~~s~vAAf~lPan----------------------~G~l~i~ 94 (303)
T PRK10564 47 QLTWQPVD--QSK-TQTTQLATGG--QQL-----NVAGISGPVAAYSLPAN----------------------IGELTLT 94 (303)
T ss_pred cCCceEcc--CCC-ceEEEeCCCC--cce-----ecCCCcccEEEEEcccc----------------------cccEEEE
Confidence 46788775 343 8889999886 333 22255667776666532 3577888
Q ss_pred EEEEeCCCCeEEEEee--eeCCCCCCCcEEecCccccccccc
Q 024895 209 FVVTSGYDGKWIWAKN--VLPADWKPGMIYNSGVQITDIAKE 248 (261)
Q Consensus 209 vt~Ts~~~G~~vv~~~--vip~~~~~g~~y~t~~QF~~~a~~ 248 (261)
|+ |-...+.|-+.+ ++-++|++-..|.+. +|.....+
T Consensus 95 Ls--S~v~~~~VfaPnVlvLD~~~~~~~~y~s~-~F~y~~~~ 133 (303)
T PRK10564 95 LS--SLVNDKSVFAPNVLVLDQNMRPAAFYPSS-YFTYQEPG 133 (303)
T ss_pred EE--EEecCCcEEeceEEEEcCCCCEEEEeccc-ceEEccCC
Confidence 84 424444666666 556677777777544 77765443
No 26
>PF08481 GBS_Bsp-like: GBS Bsp-like repeat; InterPro: IPR013688 This repeat is found in a number of Streptococcus proteins including some hypothetical proteins and Bsp. Bsp is a protein of group B Streptococcus (GBS) which might control cell morphology [].
Probab=29.15 E-value=2.6e+02 Score=21.24 Aligned_cols=67 Identities=15% Similarity=0.220 Sum_probs=43.7
Q ss_pred CceeEEEEEEecCccCeEEEEEEE---cC-C--CCeEEcccCcCcEEEeC----C--CCCcceEEEEEEEeCCCCeEEEE
Q 024895 155 PNYLAVKVLYQGGQTEMVAMDVAQ---VG-S--SNWGYMSRNYGAVWDTS----R--VPNGALQFRFVVTSGYDGKWIWA 222 (261)
Q Consensus 155 ~~w~av~v~n~gg~~~I~sVeV~~---~g-~--~~W~~m~r~~g~~W~~~----~--~~~gpl~~Rvt~Ts~~~G~~vv~ 222 (261)
..-+.+.+.|+.....|++|++.- .+ . -.|....+.....|.+. + .-.|.+.+.+..+. .+|+.+-+
T Consensus 10 ~g~~~v~v~~~~~~~~i~~V~~aVWSe~nGQdDL~WY~a~k~~dg~y~~~i~~~nH~~~~G~Y~vhvY~~~-~~G~~~~l 88 (95)
T PF08481_consen 10 NGTFTVTVTNVSSPKGIKSVKFAVWSEENGQDDLKWYTATKQSDGSYSVTIDLSNHKNETGTYHVHVYITD-ADGKMIGL 88 (95)
T ss_pred CCeEEEEEEeccCCCCeeEEEEEEEcCCCCCCccEEEEeeecCCCcEEEEEeHHHCCCCccEEEEEEEEEc-CCCcEEEE
Confidence 456788899887777899888852 22 2 27888866555556444 1 23478877776555 77766543
No 27
>PF04149 DUF397: Domain of unknown function (DUF397); InterPro: IPR007278 The function of this family is unknown. It has been suggested that some members of this family are regulators of transcription.
Probab=27.98 E-value=1.7e+02 Score=20.15 Aligned_cols=44 Identities=11% Similarity=0.258 Sum_probs=29.9
Q ss_pred cCCCCCC----CceEEEEeCCCCcccCCCeEEEEccCCCCCCCceecCHHHHHHhh
Q 024895 63 YKDGAGC----GACFQMRCKNPTLCSGRGTRVILTDLNHSNQTDFVISSRAFMALS 114 (261)
Q Consensus 63 ~~~g~~C----G~C~~V~c~~~~~C~~~~v~V~VtD~Cp~~~~~~DLs~~AF~~ia 114 (261)
|..+..| |.|+||.-. +. . |-|-|.=......|.+++.+|..+-
T Consensus 4 W~KSs~S~~~~~~CVEva~~------~~-~-v~vRDSk~p~~~~L~~t~~eW~aFl 51 (56)
T PF04149_consen 4 WRKSSYSGGGGGNCVEVARL------PG-G-VAVRDSKDPDGPVLTFTPAEWAAFL 51 (56)
T ss_pred eeeCCCCCCCCCCcEEEEee------cc-e-EEEecCCCCCCCEEEeCHHHHHHHH
Confidence 4444445 889999742 22 2 7777754336779999999998763
No 28
>PRK10301 hypothetical protein; Provisional
Probab=27.91 E-value=85 Score=25.21 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=18.8
Q ss_pred ccccEEEEEEEEEeecc---CCCcEEEEEe
Q 024895 123 LKLGVVDVEYKRVPCEY---KNQNLAVRVE 149 (261)
Q Consensus 123 ~~~G~v~v~~r~V~C~~---~g~ni~~~v~ 149 (261)
+..|.+.|+||-|+=+- .| .+.|.||
T Consensus 96 L~~G~YtV~Wrvvs~DGH~~~G-~~~F~V~ 124 (124)
T PRK10301 96 LKPGTYTVDWHVVSVDGHKTKG-HYTFSVK 124 (124)
T ss_pred CCCccEEEEEEEEecCCCccCC-eEEEEEC
Confidence 57899999999998553 33 5666553
No 29
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=27.81 E-value=92 Score=25.46 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=21.3
Q ss_pred ccccEEEEEEEEEeecc--CCCcEEEEEec
Q 024895 123 LKLGVVDVEYKRVPCEY--KNQNLAVRVEE 150 (261)
Q Consensus 123 ~~~G~v~v~~r~V~C~~--~g~ni~~~v~~ 150 (261)
+..|.+.++||.|+=+- .++.+.|.|+.
T Consensus 97 L~aG~Y~v~WrvvS~DGH~v~G~~sFsV~~ 126 (127)
T COG2372 97 LKAGVYTVDWRVVSSDGHVVKGSISFSVGA 126 (127)
T ss_pred CCCCcEEEEEEEEecCCcEeccEEEEEecC
Confidence 78999999999999764 22377777653
No 30
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=25.60 E-value=2.6e+02 Score=20.22 Aligned_cols=48 Identities=21% Similarity=0.474 Sum_probs=31.1
Q ss_pred CeEEEEEEEcCCCCeE---EcccCcCcEEEeCC-CCCcceEEEEEEEeCCCCeEEEEe
Q 024895 170 EMVAMDVAQVGSSNWG---YMSRNYGAVWDTSR-VPNGALQFRFVVTSGYDGKWIWAK 223 (261)
Q Consensus 170 ~I~sVeV~~~g~~~W~---~m~r~~g~~W~~~~-~~~gpl~~Rvt~Ts~~~G~~vv~~ 223 (261)
+.++|+|.++= ..|. +|.|..+. |++.- .+.|.+.+|+. .+|+++...
T Consensus 11 ~a~~V~v~G~F-~~W~~~~pm~~~~~~-~~~~~~L~~g~y~YkF~----Vdg~w~~d~ 62 (79)
T cd02859 11 GGKEVYVTGSF-DNWKKKIPLEKSGKG-FSATLRLPPGKYQYKFI----VDGEWRHSP 62 (79)
T ss_pred CCcEEEEEEEc-CCCCccccceECCCC-cEEEEEcCCCCEEEEEE----ECCEEEeCC
Confidence 45788888642 3565 58876555 76553 34677788885 468887643
No 31
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=23.02 E-value=99 Score=23.35 Aligned_cols=15 Identities=27% Similarity=0.430 Sum_probs=12.0
Q ss_pred ccccEEEEEEEEEee
Q 024895 123 LKLGVVDVEYKRVPC 137 (261)
Q Consensus 123 ~~~G~v~v~~r~V~C 137 (261)
+..|.+.|+||-|+=
T Consensus 69 l~~G~YtV~wrvvs~ 83 (97)
T PF04234_consen 69 LPPGTYTVSWRVVSA 83 (97)
T ss_dssp --SEEEEEEEEEEET
T ss_pred CCCceEEEEEEEEec
Confidence 568999999999983
No 32
>TIGR02934 nifT_nitrog probable nitrogen fixation protein FixT. This largely uncharacterized protein family is assigned a role in nitrogen fixation by two criteria. First, its gene occurs, generally, among genes essential for expression of active nitrogenase. Second, its phylogenetic profile closely matches that of nitrogen-fixing bacteria. However, mutational studies in Klebsiella pneumoniae failed to demonstrate any phenotype for deletion or overexpression of the protein.
Probab=21.20 E-value=3.3e+02 Score=19.76 Aligned_cols=49 Identities=8% Similarity=0.141 Sum_probs=28.9
Q ss_pred eEEEEEEecCccCeEEEEEEEcCCCCeEEcccCcCcEEEeCCC---CCcceEEEE
Q 024895 158 LAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRV---PNGALQFRF 209 (261)
Q Consensus 158 ~av~v~n~gg~~~I~sVeV~~~g~~~W~~m~r~~g~~W~~~~~---~~gpl~~Rv 209 (261)
+.+.|.-..=..+|.++| +....+.|..|.+.| .+.++.. ++-|++||.
T Consensus 13 l~~YvpKKDLEE~Vv~~e-~~~~WGG~v~L~NGw--~l~lp~l~~~~~LPiTveA 64 (67)
T TIGR02934 13 LSAYVPKKDLEEVIVSVE-KEELWGGWVTLANGW--RLELPEIPDDTRLPITVEA 64 (67)
T ss_pred EEEEEECCcchhheeeee-cCccccCEEEECCcc--EEEeCCCCCCCCCCEEEEE
Confidence 444454334445788888 433446778886654 4556542 355777775
No 33
>PLN02252 nitrate reductase [NADPH]
Probab=21.06 E-value=2.7e+02 Score=29.91 Aligned_cols=27 Identities=22% Similarity=0.539 Sum_probs=20.8
Q ss_pred EEecCccCeEEEEEEEcCCCCeEEccc
Q 024895 163 LYQGGQTEMVAMDVAQVGSSNWGYMSR 189 (261)
Q Consensus 163 ~n~gg~~~I~sVeV~~~g~~~W~~m~r 189 (261)
.+.||...|+.|||..+++.+|+....
T Consensus 366 A~sggg~~I~rVEVS~DgG~tW~~a~l 392 (888)
T PLN02252 366 AYSGGGRKVTRVEVSLDGGETWRLCDL 392 (888)
T ss_pred EECCCCCceEEEEEEcCCCCcceeCcc
Confidence 333444579999999999899997654
No 34
>PF06988 NifT: NifT/FixU protein; InterPro: IPR009727 This family consists of several NifT and FixU bacterial proteins. The function of NifT is unknown although it is thought that the protein may be involved in biosynthesis of the FeMo cofactor of nitrogenase although perturbation of nifT expression in Klebsiella pneumoniae has only a limited effect on nitrogen fixation [].; GO: 0009399 nitrogen fixation; PDB: 2JN4_A.
Probab=20.29 E-value=1.4e+02 Score=21.49 Aligned_cols=36 Identities=6% Similarity=-0.029 Sum_probs=16.3
Q ss_pred CeEEEEEEEcCCCCeEEcccCcCcEEEeCCC---CCcceEEE
Q 024895 170 EMVAMDVAQVGSSNWGYMSRNYGAVWDTSRV---PNGALQFR 208 (261)
Q Consensus 170 ~I~sVeV~~~g~~~W~~m~r~~g~~W~~~~~---~~gpl~~R 208 (261)
+|.++| +....+.|..|.+.| .|.++.. ++-|.+||
T Consensus 25 ~Vv~~E-~~~~wGG~v~L~NGw--~l~lp~~~~~~~lPiTve 63 (64)
T PF06988_consen 25 PVVSME-KPELWGGEVTLANGW--ELYLPPLPADTRLPITVE 63 (64)
T ss_dssp EEEEES-SSSS-SSEEEETTS---EEE----SSS-SS-EEE-
T ss_pred ceeeee-ccCccCCEEEECCcC--EEEeCCCCCCCCCCeEee
Confidence 455555 334446778886654 6666642 34576665
Done!