BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024896
(261 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|317106673|dbj|BAJ53176.1| JHL18I08.10 [Jatropha curcas]
Length = 262
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 216/264 (81%), Positives = 239/264 (90%), Gaps = 5/264 (1%)
Query: 1 MEDDQSNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQ 60
M++D N+G+ G L+TAKADRSVWLMKCPLVVAKSWQ+ ASS DS PVAKV+LSLDPL+
Sbjct: 1 MDEDHGNNGSNSGVLETAKADRSVWLMKCPLVVAKSWQSHASSSDSHPVAKVVLSLDPLR 60
Query: 61 SD---SMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFD 117
SD ++QFTME N+ N PKSYSLNMFKDFVPM VFSE++QG+VAMEGKVEHKFD
Sbjct: 61 SDDPSALQFTMEMAG--NEIGNIPKSYSLNMFKDFVPMCVFSETSQGRVAMEGKVEHKFD 118
Query: 118 MKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKA 177
MKPHE+N+EEYGRLCRERTNKSM+KNRQIQVIDND GVHMRPMPGM+GL+SS+SKDKKK
Sbjct: 119 MKPHEENIEEYGRLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLMSSSSKDKKKT 178
Query: 178 QPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNK 237
PVKQ+++KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNK
Sbjct: 179 APVKQSDMKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNK 238
Query: 238 RGTNQGTYELKPEYKKSVEDGGAD 261
RGTNQGTYELKPEYKKS ED GAD
Sbjct: 239 RGTNQGTYELKPEYKKSAEDAGAD 262
>gi|255538806|ref|XP_002510468.1| Transcription initiation factor IIF subunit beta, putative [Ricinus
communis]
gi|223551169|gb|EEF52655.1| Transcription initiation factor IIF subunit beta, putative [Ricinus
communis]
Length = 257
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 216/256 (84%), Positives = 233/256 (91%), Gaps = 3/256 (1%)
Query: 7 NHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSD-SMQ 65
+HG+ G L+TAKADRSVWLMKCPLVVA+SW++ ASS DS PVAKV+LSLDPL+SD S+Q
Sbjct: 4 DHGSSSGILETAKADRSVWLMKCPLVVARSWKSHASSSDSHPVAKVVLSLDPLRSDDSLQ 63
Query: 66 FTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNM 125
FTME N N PKSYSLNMFKDFVPMSVFSE+ QG+VA+EGKVEHKFDMKPHE+NM
Sbjct: 64 FTMEMAGTENG--NVPKSYSLNMFKDFVPMSVFSETTQGRVAIEGKVEHKFDMKPHEENM 121
Query: 126 EEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEV 185
EEYGRLCRERTNKSMIKNRQIQVIDND GVHMRPMPGMVGLISS+SKDKKK PVKQ+++
Sbjct: 122 EEYGRLCRERTNKSMIKNRQIQVIDNDRGVHMRPMPGMVGLISSSSKDKKKTAPVKQSDM 181
Query: 186 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTY 245
KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTY
Sbjct: 182 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTY 241
Query: 246 ELKPEYKKSVEDGGAD 261
ELKPEYKKS ED G D
Sbjct: 242 ELKPEYKKSAEDTGGD 257
>gi|449469921|ref|XP_004152667.1| PREDICTED: transcription initiation factor IIF subunit beta-like
[Cucumis sativus]
gi|449520699|ref|XP_004167371.1| PREDICTED: transcription initiation factor IIF subunit beta-like
[Cucumis sativus]
Length = 260
Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust.
Identities = 208/262 (79%), Positives = 227/262 (86%), Gaps = 6/262 (2%)
Query: 3 DDQSNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSD 62
+D+ G NLDT KADRSVWLMKCPL+VAKSWQ S DS P+AKVILSLDPLQSD
Sbjct: 2 EDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPS-DSLPLAKVILSLDPLQSD 60
Query: 63 ---SMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMK 119
S+QF ME ++ N PKS+SLNMFKDFVPM VFSE++QGKV+MEGKVEHKFDMK
Sbjct: 61 ESSSLQFKMEMAGT--ETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMK 118
Query: 120 PHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQP 179
PH +N+E YG+LCRERTNKSM+KNRQIQVIDND GVHMRPMPGMVGLISS SK+KKK P
Sbjct: 119 PHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAP 178
Query: 180 VKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRG 239
VKQ++VKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRG
Sbjct: 179 VKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRG 238
Query: 240 TNQGTYELKPEYKKSVEDGGAD 261
TNQGTYELKPEYKKSVED G +
Sbjct: 239 TNQGTYELKPEYKKSVEDTGGE 260
>gi|224085774|ref|XP_002307692.1| predicted protein [Populus trichocarpa]
gi|118481065|gb|ABK92486.1| unknown [Populus trichocarpa]
gi|222857141|gb|EEE94688.1| predicted protein [Populus trichocarpa]
Length = 261
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 209/266 (78%), Positives = 233/266 (87%), Gaps = 10/266 (3%)
Query: 1 MEDDQSNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQAS--SQDSQPVAKVILSLDP 58
ME+D S+ NL+T+KAD+SVWLMKCP+VVAKSW+ S S DS P+AKV+LSLDP
Sbjct: 1 MEEDNSS---SSANLETSKADKSVWLMKCPVVVAKSWKTHTSPSSSDSAPLAKVVLSLDP 57
Query: 59 LQSD---SMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHK 115
LQSD ++QFTME ++ N PKSYSLNMFKDFVPM VFSE+ QGKVAMEGKVEHK
Sbjct: 58 LQSDDPSALQFTMEM--ARTEAGNVPKSYSLNMFKDFVPMCVFSETPQGKVAMEGKVEHK 115
Query: 116 FDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKK 175
FDMKPHE+N+EEY +LCRERT KSM+K RQIQVI+ND GVHMRPMPGMVGLISS+SKDKK
Sbjct: 116 FDMKPHEQNIEEYHKLCRERTKKSMVKIRQIQVINNDRGVHMRPMPGMVGLISSSSKDKK 175
Query: 176 KAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVY 235
+ QPVKQ++VKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVY
Sbjct: 176 RPQPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVY 235
Query: 236 NKRGTNQGTYELKPEYKKSVEDGGAD 261
NKRGTNQGTYELKPEYKK+VED GAD
Sbjct: 236 NKRGTNQGTYELKPEYKKTVEDTGAD 261
>gi|224062059|ref|XP_002300734.1| predicted protein [Populus trichocarpa]
gi|222842460|gb|EEE80007.1| predicted protein [Populus trichocarpa]
Length = 265
Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust.
Identities = 202/251 (80%), Positives = 226/251 (90%), Gaps = 6/251 (2%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQ-NQASSQDSQPVAKVILSLDPLQSD---SMQFTMET 70
L+T+KAD++VWLMKCP+VVAKSW+ + SS DS P+AKV+LSLDPLQSD ++QFTME
Sbjct: 17 LETSKADKAVWLMKCPVVVAKSWKSHHTSSSDSAPLAKVVLSLDPLQSDDPSAIQFTME- 75
Query: 71 TAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGR 130
++ N PKSYSLNMFKDFVPM VFSE+ QG+V+MEGKVEHKFDMKPHE+N+EEY +
Sbjct: 76 -MARTETGNVPKSYSLNMFKDFVPMGVFSETPQGRVSMEGKVEHKFDMKPHEENIEEYSK 134
Query: 131 LCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRR 190
LCR+RT KSMIKNRQI+VIDND GVHMRPMPGMVGLISS SKDKKK QPVKQ++VKRTRR
Sbjct: 135 LCRDRTKKSMIKNRQIRVIDNDRGVHMRPMPGMVGLISSTSKDKKKTQPVKQSDVKRTRR 194
Query: 191 DRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPE 250
DRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPE
Sbjct: 195 DRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPE 254
Query: 251 YKKSVEDGGAD 261
YKK+ ED GAD
Sbjct: 255 YKKTAEDTGAD 265
>gi|302142579|emb|CBI19782.3| unnamed protein product [Vitis vinifera]
Length = 259
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 207/264 (78%), Positives = 231/264 (87%), Gaps = 8/264 (3%)
Query: 1 MEDDQSNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQ 60
ME++Q N + NL+T KA+RSVWLMKCPL V+KS SS +SQPVAKV+LSLDPL+
Sbjct: 1 MEEEQGNSSSS--NLETGKAERSVWLMKCPLAVSKS-WQSHSSSESQPVAKVVLSLDPLR 57
Query: 61 SD---SMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFD 117
S+ +++FTME T + N PKSYSLNMFKDFVPM VFSE+NQG+VAMEGKVEHKFD
Sbjct: 58 SEDPSALEFTMEMTGTG--APNMPKSYSLNMFKDFVPMCVFSETNQGRVAMEGKVEHKFD 115
Query: 118 MKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKA 177
MKPH +N+EEYG+LCRERTNKSMIKNRQIQVIDND GVHMRPMPGMVGLI+SNSKDKKK
Sbjct: 116 MKPHNENIEEYGKLCRERTNKSMIKNRQIQVIDNDRGVHMRPMPGMVGLIASNSKDKKKT 175
Query: 178 QPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNK 237
PVK +++KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNK
Sbjct: 176 APVKGSDMKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNK 235
Query: 238 RGTNQGTYELKPEYKKSVEDGGAD 261
RGTNQGTYELKPEYKKS ED GA+
Sbjct: 236 RGTNQGTYELKPEYKKSAEDTGAE 259
>gi|356518378|ref|XP_003527856.1| PREDICTED: transcription initiation factor IIF subunit beta-like
[Glycine max]
Length = 262
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 202/267 (75%), Positives = 227/267 (85%), Gaps = 11/267 (4%)
Query: 1 MEDDQSNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQ 60
M+++ G+ NL+T KA+RSVWLMKCPLVVAKSWQ SQ P+AKV+LSLDPL
Sbjct: 1 MDEENGYSGSISSNLETTKAERSVWLMKCPLVVAKSWQTHPPSQ---PLAKVVLSLDPLH 57
Query: 61 SD-----SMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQG-KVAMEGKVEH 114
+ ++QFTME +++N K+YSLNMFKDFVPM VFSE++QG KVAMEGKVEH
Sbjct: 58 PEEDDPSAVQFTMEMAGT--EAVNMSKTYSLNMFKDFVPMCVFSETSQGGKVAMEGKVEH 115
Query: 115 KFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDK 174
KFDMKPH +N+EEYG+LCRERTNKSMIKNRQIQVIDND GV MRPMPGM+GL+SSNSKDK
Sbjct: 116 KFDMKPHGENIEEYGKLCRERTNKSMIKNRQIQVIDNDRGVLMRPMPGMIGLVSSNSKDK 175
Query: 175 KKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCV 234
KK QPVKQ++ KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCV
Sbjct: 176 KKTQPVKQSDTKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCV 235
Query: 235 YNKRGTNQGTYELKPEYKKSVEDGGAD 261
YNKRG NQGTYELKPEYKKSVED A+
Sbjct: 236 YNKRGANQGTYELKPEYKKSVEDTSAE 262
>gi|359492177|ref|XP_002279990.2| PREDICTED: transcription initiation factor IIF subunit beta [Vitis
vinifera]
Length = 260
Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust.
Identities = 208/265 (78%), Positives = 229/265 (86%), Gaps = 9/265 (3%)
Query: 1 MEDDQSNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQ 60
ME++Q N + NL+T KA+RSVWLMKCPL V+KS SS +SQPVAKV+LSLDPL+
Sbjct: 1 MEEEQGNSSSS--NLETGKAERSVWLMKCPLAVSKS-WQSHSSSESQPVAKVVLSLDPLR 57
Query: 61 SDS----MQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKF 116
S+ QFTME T + N PKSYSLNMFKDFVPM VFSE+NQG+VAMEGKVEHKF
Sbjct: 58 SEDPSALEQFTMEMTGTG--APNMPKSYSLNMFKDFVPMCVFSETNQGRVAMEGKVEHKF 115
Query: 117 DMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKK 176
DMKPH +N+EEYG+LCRERTNKSMIKNRQIQVIDND GVHMRPMPGMVGLI+SNSKDKKK
Sbjct: 116 DMKPHNENIEEYGKLCRERTNKSMIKNRQIQVIDNDRGVHMRPMPGMVGLIASNSKDKKK 175
Query: 177 AQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYN 236
PVK +++KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYN
Sbjct: 176 TAPVKGSDMKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYN 235
Query: 237 KRGTNQGTYELKPEYKKSVEDGGAD 261
KRGTNQGTYELKPEYKKS ED GA+
Sbjct: 236 KRGTNQGTYELKPEYKKSAEDTGAE 260
>gi|359807121|ref|NP_001241605.1| uncharacterized protein LOC100788473 [Glycine max]
gi|255646380|gb|ACU23669.1| unknown [Glycine max]
Length = 262
Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust.
Identities = 201/254 (79%), Positives = 223/254 (87%), Gaps = 11/254 (4%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSD-----SMQFTM 68
NL+T KA+RSVWLMKCPLVVAKSWQ SQ P+AKV+LSLDPL + ++QFTM
Sbjct: 14 NLETTKAERSVWLMKCPLVVAKSWQAHPPSQ---PLAKVVLSLDPLHPEEDDPSAVQFTM 70
Query: 69 ETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQG-KVAMEGKVEHKFDMKPHEKNMEE 127
E ++++N PK+YSLNMFKDFVPM VFSE++QG KVAMEGKVEHKFDMKPH +N+EE
Sbjct: 71 EMAG--SEAVNMPKTYSLNMFKDFVPMCVFSETSQGGKVAMEGKVEHKFDMKPHGENIEE 128
Query: 128 YGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKR 187
YG+LCRERTNKSMIKNRQIQVIDND GV MRPMPGM+GL+SSNSKDKKK QPVKQ++ KR
Sbjct: 129 YGKLCRERTNKSMIKNRQIQVIDNDRGVLMRPMPGMIGLVSSNSKDKKKTQPVKQSDTKR 188
Query: 188 TRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYEL 247
TRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRG NQGTYEL
Sbjct: 189 TRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQGTYEL 248
Query: 248 KPEYKKSVEDGGAD 261
KPEYKKSVED A+
Sbjct: 249 KPEYKKSVEDTSAE 262
>gi|388521215|gb|AFK48669.1| unknown [Lotus japonicus]
Length = 258
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 198/250 (79%), Positives = 224/250 (89%), Gaps = 8/250 (3%)
Query: 13 GNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDS----MQFTM 68
N++T+KA+RSVWLMKCP+VVAKSWQN S SQP++KV+LSLDPL + +QFTM
Sbjct: 8 SNVETSKAERSVWLMKCPVVVAKSWQNHHPS-PSQPLSKVVLSLDPLLPEDDPSHLQFTM 66
Query: 69 ETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQG-KVAMEGKVEHKFDMKPHEKNMEE 127
E T ++++N PK+Y+LNMFKDFVPM VFSE++QG KVAMEGKVEHKFDMKPH +N+EE
Sbjct: 67 EMTG--SEAVNMPKTYALNMFKDFVPMCVFSETSQGGKVAMEGKVEHKFDMKPHGENIEE 124
Query: 128 YGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKR 187
YG+LCRERTNKSMIKNRQIQVIDND GV MRPMPGM+GL+SSNSKDKK+ QPVKQ++ KR
Sbjct: 125 YGKLCRERTNKSMIKNRQIQVIDNDRGVLMRPMPGMIGLVSSNSKDKKRTQPVKQSDTKR 184
Query: 188 TRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYEL 247
TRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRG NQGTYEL
Sbjct: 185 TRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQGTYEL 244
Query: 248 KPEYKKSVED 257
KPEYKKSVED
Sbjct: 245 KPEYKKSVED 254
>gi|217075038|gb|ACJ85879.1| unknown [Medicago truncatula]
gi|388492442|gb|AFK34287.1| unknown [Medicago truncatula]
Length = 262
Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust.
Identities = 188/253 (74%), Positives = 218/253 (86%), Gaps = 10/253 (3%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDS----MQFTME 69
NL+T+KA+RSVWLMKCP+ VAKSWQN SQ P++KV+ S+DPL + +QFTME
Sbjct: 15 NLETSKAERSVWLMKCPVAVAKSWQNHPPSQ---PLSKVVFSIDPLLPEDDPAHLQFTME 71
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQG-KVAMEGKVEHKFDMKPHEKNMEEY 128
+ +++N PK+YSLNMFKDFVPM +FSE+++G KVAMEGKVEHKFDMKP +NM++Y
Sbjct: 72 MSGT--EAVNMPKTYSLNMFKDFVPMCIFSETSEGDKVAMEGKVEHKFDMKPRHENMDDY 129
Query: 129 GRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRT 188
G+LCRERT KSMIKNRQ+Q+I +D G HMRPMPGMVGL+SSN KDKK+ QPVKQT+ KRT
Sbjct: 130 GKLCRERTKKSMIKNRQVQIIADDRGTHMRPMPGMVGLVSSNFKDKKRTQPVKQTDTKRT 189
Query: 189 RRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELK 248
RRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRG NQGTYELK
Sbjct: 190 RRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQGTYELK 249
Query: 249 PEYKKSVEDGGAD 261
PEYKKSVED A+
Sbjct: 250 PEYKKSVEDANAE 262
>gi|326493564|dbj|BAJ85243.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 262
Score = 367 bits (941), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 178/259 (68%), Positives = 211/259 (81%), Gaps = 7/259 (2%)
Query: 9 GNGKGNLDTAKADRSVWLMKCPLVVAKSWQN-QASSQDSQP---VAKVILSLDPLQS--D 62
G+ L+TA+ADRSVWLMKCP VV+++WQ ASS D+ P VAKV+LSLDPL S
Sbjct: 2 GDEAKYLETARADRSVWLMKCPPVVSQAWQGASASSGDANPNPVVAKVVLSLDPLSSAEP 61
Query: 63 SMQFTMETTAVS-NDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPH 121
S+QF ME + S + N PKSYSLNMFKDFVPM VFSE+NQGK++ EGKVEHKFDM+PH
Sbjct: 62 SLQFKMEMSQTSVASTCNLPKSYSLNMFKDFVPMCVFSETNQGKLSCEGKVEHKFDMEPH 121
Query: 122 EKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVK 181
+ N+ Y +LCRERT KSM+K R++QV+DNDHG+ MRPMPGMVGLISS+SK+K+K P K
Sbjct: 122 KDNLLNYAKLCRERTQKSMVKTRKVQVLDNDHGMSMRPMPGMVGLISSSSKEKRKPTPTK 181
Query: 182 QTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 241
++VKRTRRDR ELE+I FKLFE+QPNWALK LVQETDQP QFLKEILN+LC+YNKRG N
Sbjct: 182 PSDVKRTRRDRRELENITFKLFEKQPNWALKALVQETDQPEQFLKEILNDLCMYNKRGPN 241
Query: 242 QGTYELKPEYKKSVEDGGA 260
QGT+ELKPEYKKS ED
Sbjct: 242 QGTHELKPEYKKSSEDAAG 260
>gi|297842295|ref|XP_002889029.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297334870|gb|EFH65288.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 260
Score = 365 bits (937), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 181/255 (70%), Positives = 205/255 (80%), Gaps = 12/255 (4%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQP-------VAKVILSLDPLQSD-SMQF 66
LD K DR +WLMKCP+VVAK+W+ A S S +AKV+L +DPL+ D S +F
Sbjct: 7 LDMEKTDRRIWLMKCPVVVAKTWEKLAPSSSSYSSSDSLPNLAKVVLDVDPLRPDYSPEF 66
Query: 67 TMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNME 126
TM+ A N PK Y+LNMFKDFVPM FSE+N A+EG V+HKFDMKPH +N+E
Sbjct: 67 TMQMVAAEYG--NMPKCYALNMFKDFVPMEAFSETNLVNTAVEGNVDHKFDMKPHGENIE 124
Query: 127 EYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVK 186
EY RLCRERT+K+M+KNRQIQVIDND GVHMRPMPGM+GL+SSNSK+K+K PVKQTEVK
Sbjct: 125 EYARLCRERTSKAMVKNRQIQVIDNDRGVHMRPMPGMLGLVSSNSKEKRKPPPVKQTEVK 184
Query: 187 RTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYE 246
RTRRDRGELE IMFKLFE QPNW LKQLVQETDQPAQFLKEILNELCVYNKRG+NQGTYE
Sbjct: 185 RTRRDRGELEAIMFKLFEGQPNWTLKQLVQETDQPAQFLKEILNELCVYNKRGSNQGTYE 244
Query: 247 LKPEYKKSVED--GG 259
LKPEYKKS ED GG
Sbjct: 245 LKPEYKKSAEDDAGG 259
>gi|357133056|ref|XP_003568144.1| PREDICTED: transcription initiation factor IIF subunit beta-like
isoform 1 [Brachypodium distachyon]
Length = 261
Score = 358 bits (919), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 174/253 (68%), Positives = 208/253 (82%), Gaps = 7/253 (2%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQN-QASSQDSQP---VAKVILSLDPLQS--DSMQFTM 68
L+TA+ADRSVWLMKCP VV+++WQ ASS D P VAKV+LSLDPL S S++F M
Sbjct: 8 LETARADRSVWLMKCPPVVSQAWQGASASSGDGNPNPVVAKVVLSLDPLSSAEPSIKFKM 67
Query: 69 ETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEY 128
E + + N PKSYSLNMFKDFVPM VFSE+NQGK++ EGKVEHKFDM+PH+ N+ Y
Sbjct: 68 EMAQTRDITCNLPKSYSLNMFKDFVPMCVFSEANQGKLSCEGKVEHKFDMEPHKDNLINY 127
Query: 129 GRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLI-SSNSKDKKKAQPVKQTEVKR 187
+LCRERT KSM+K R++QV+DNDHG+ MRP+PGMVGLI S +SK+K+K P K ++VKR
Sbjct: 128 AKLCRERTQKSMVKTRKVQVLDNDHGMSMRPLPGMVGLIPSGSSKEKRKPTPTKPSDVKR 187
Query: 188 TRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYEL 247
TRRDR ELE+I+FKLFE+QPNWALK LVQETDQP QFLKEILN+LC+YNKRG NQGT+EL
Sbjct: 188 TRRDRRELENIIFKLFEKQPNWALKALVQETDQPEQFLKEILNDLCMYNKRGPNQGTHEL 247
Query: 248 KPEYKKSVEDGGA 260
KPEYKKS ED A
Sbjct: 248 KPEYKKSSEDAEA 260
>gi|15222264|ref|NP_177683.1| transcription initiation factor TFIIF beta subunit [Arabidopsis
thaliana]
gi|9369371|gb|AAF87120.1|AC006434_16 F10A5.27 [Arabidopsis thaliana]
gi|11692842|gb|AAG40024.1|AF324673_1 At1g75700 [Arabidopsis thaliana]
gi|11935195|gb|AAG42013.1|AF327423_1 putative transcription initiation factor [Arabidopsis thaliana]
gi|12642908|gb|AAK00396.1|AF339714_1 putative transcription initiation factor [Arabidopsis thaliana]
gi|39545896|gb|AAR28011.1| TFIIF-beta 2 [Arabidopsis thaliana]
gi|110741044|dbj|BAE98616.1| putative transcription initiation factor [Arabidopsis thaliana]
gi|332197607|gb|AEE35728.1| transcription initiation factor TFIIF beta subunit [Arabidopsis
thaliana]
Length = 261
Score = 353 bits (906), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 176/253 (69%), Positives = 201/253 (79%), Gaps = 11/253 (4%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQN--------QASSQDSQPVAKVILSLDPLQSDSM- 64
NLD K+DRS+WLMKCP+VV K+W ASS +AK++ +DPL+ DS
Sbjct: 6 NLDIEKSDRSIWLMKCPVVVDKAWHKIAASSSSSFASSDSPPDMAKIVREVDPLRDDSPP 65
Query: 65 QFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKN 124
+F M V + N PK Y+LNMF DFVPM FS+ NQG A EGKV+HKFDMKP+ +
Sbjct: 66 EFKM--YMVGAEYGNMPKCYALNMFTDFVPMGGFSDVNQGCAAAEGKVDHKFDMKPYGET 123
Query: 125 MEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTE 184
+EEY RLCRERT+K+M+KNRQIQVIDND GVHMRPMPGM+GL+SSNSK+K+K PVKQTE
Sbjct: 124 IEEYARLCRERTSKAMVKNRQIQVIDNDRGVHMRPMPGMLGLVSSNSKEKRKPPPVKQTE 183
Query: 185 VKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGT 244
VKRTRRDRGELE IMFKLFE QPNW LKQLVQETDQPAQFLKEILNELCVYNKRG+NQGT
Sbjct: 184 VKRTRRDRGELEAIMFKLFEGQPNWTLKQLVQETDQPAQFLKEILNELCVYNKRGSNQGT 243
Query: 245 YELKPEYKKSVED 257
YELKPEYKKS ED
Sbjct: 244 YELKPEYKKSAED 256
>gi|357133058|ref|XP_003568145.1| PREDICTED: transcription initiation factor IIF subunit beta-like
isoform 2 [Brachypodium distachyon]
Length = 279
Score = 352 bits (904), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 173/271 (63%), Positives = 204/271 (75%), Gaps = 25/271 (9%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQN-QASSQDSQP---VAKVILSLDPLQSDS------- 63
L+TA+ADRSVWLMKCP VV+++WQ ASS D P VAKV+LSLDPL S
Sbjct: 8 LETARADRSVWLMKCPPVVSQAWQGASASSGDGNPNPVVAKVVLSLDPLSSAEPSIKART 67
Query: 64 --------------MQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAME 109
+QF ME + + N PKSYSLNMFKDFVPM VFSE+NQGK++ E
Sbjct: 68 PPRRPRCSPPPTCLLQFGMEMAQTRDITCNLPKSYSLNMFKDFVPMCVFSEANQGKLSCE 127
Query: 110 GKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISS 169
GKVEHKFDM+PH+ N+ Y +LCRERT KSM+K R++QV+DNDHG+ MRP+PGMVGLI S
Sbjct: 128 GKVEHKFDMEPHKDNLINYAKLCRERTQKSMVKTRKVQVLDNDHGMSMRPLPGMVGLIPS 187
Query: 170 NSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEIL 229
S K+K P K ++VKRTRRDR ELE+I+FKLFE+QPNWALK LVQETDQP QFLKEIL
Sbjct: 188 GSSKKRKPTPTKPSDVKRTRRDRRELENIIFKLFEKQPNWALKALVQETDQPEQFLKEIL 247
Query: 230 NELCVYNKRGTNQGTYELKPEYKKSVEDGGA 260
N+LC+YNKRG NQGT+ELKPEYKKS ED A
Sbjct: 248 NDLCMYNKRGPNQGTHELKPEYKKSSEDAEA 278
>gi|242091041|ref|XP_002441353.1| hypothetical protein SORBIDRAFT_09g025080 [Sorghum bicolor]
gi|241946638|gb|EES19783.1| hypothetical protein SORBIDRAFT_09g025080 [Sorghum bicolor]
Length = 267
Score = 348 bits (893), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 172/261 (65%), Positives = 207/261 (79%), Gaps = 17/261 (6%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQ----DSQPV-AKVILSLDPLQSD------- 62
L+TA+ADRSVWLMKCP VV+++WQ ++S ++ PV AKV+LSLD L+ +
Sbjct: 8 LETARADRSVWLMKCPPVVSRAWQAASASSSDPNNANPVVAKVVLSLDLLRPEEPPEDRP 67
Query: 63 ---SMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMK 119
++QF ME ++ N PKSYSLNMFKDFVPM VFSESNQGK++ EGKVEHKFDM+
Sbjct: 68 EEPTLQFKMEL--AQTNTGNTPKSYSLNMFKDFVPMCVFSESNQGKLSCEGKVEHKFDME 125
Query: 120 PHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQP 179
PH N+ YG+LCRERT K M+K+RQ+QV+DNDHG+ MRPMPG+VGLI S SK+KKK P
Sbjct: 126 PHSDNLANYGKLCRERTQKYMVKSRQVQVLDNDHGMSMRPMPGLVGLIPSGSKEKKKQAP 185
Query: 180 VKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRG 239
K ++VKRTRRDR E+E+I+FKLFERQPNWALK LVQETDQP QFLKEILN+LCVYNKRG
Sbjct: 186 AKPSDVKRTRRDRTEMENIIFKLFERQPNWALKALVQETDQPEQFLKEILNDLCVYNKRG 245
Query: 240 TNQGTYELKPEYKKSVEDGGA 260
NQGT+ELKPEYKKS D A
Sbjct: 246 PNQGTHELKPEYKKSTGDADA 266
>gi|56785216|dbj|BAD82068.1| putative transcription initiation factor IIF beta subunit [Oryza
sativa Japonica Group]
Length = 277
Score = 337 bits (864), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 171/270 (63%), Positives = 204/270 (75%), Gaps = 25/270 (9%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQP--------------------VAKVI 53
NL+TA+ADRSVWLMKCP VV+++WQ A++ S VAKVI
Sbjct: 7 NLETARADRSVWLMKCPTVVSRAWQEAATAAASSSSSSDAAAGANSNSNANPNPVVAKVI 66
Query: 54 LSLDPLQSD--SMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGK 111
+SLDPL+S+ +QF ME N N PKSYSLNMFKDFVPM VFSESNQGK++ EGK
Sbjct: 67 VSLDPLRSEDQQLQFKMEMAQTGNG--NTPKSYSLNMFKDFVPMCVFSESNQGKLSCEGK 124
Query: 112 VEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNS 171
V HKFDM+PH N+ YG+LCRERT KSMIKNR++ V+ ND+G+ MRP+PG+VGL+SS
Sbjct: 125 VGHKFDMEPHSDNLVNYGKLCRERTQKSMIKNRKLMVLANDNGMSMRPLPGLVGLMSSGP 184
Query: 172 KDK-KKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILN 230
K K KK PVK +++KRTRRDR ELE+I+FKLFERQPNW+LK L+QETDQP QFLKEILN
Sbjct: 185 KQKEKKPLPVKPSDMKRTRRDRRELENILFKLFERQPNWSLKNLMQETDQPEQFLKEILN 244
Query: 231 ELCVYNKRGTNQGTYELKPEYKKSVEDGGA 260
+LC YNKRG NQGT+ELKPEYKKS ED A
Sbjct: 245 DLCFYNKRGPNQGTHELKPEYKKSTEDADA 274
>gi|115464811|ref|NP_001056005.1| Os05g0509900 [Oryza sativa Japonica Group]
gi|48475207|gb|AAT44276.1| putative transcription initiation factor [Oryza sativa Japonica
Group]
gi|113579556|dbj|BAF17919.1| Os05g0509900 [Oryza sativa Japonica Group]
gi|215706385|dbj|BAG93241.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222632183|gb|EEE64315.1| hypothetical protein OsJ_19152 [Oryza sativa Japonica Group]
Length = 259
Score = 337 bits (863), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 171/254 (67%), Positives = 199/254 (78%), Gaps = 11/254 (4%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQD---SQP---VAKVILSLDPLQSD--SMQF 66
L+TA+A+RSVWLMKCP VV+ +WQ SS D S P VAKV+LSLD L+S+ S+QF
Sbjct: 8 LETARAERSVWLMKCPPVVSHAWQGAVSSSDAAGSNPNPVVAKVVLSLDLLRSEEPSLQF 67
Query: 67 TMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNME 126
ME ++ N PKSYSLNM KDFVPM VFSESNQGK++ EGKVEHKFDMKPH N+
Sbjct: 68 KMEM--AQTNTGNTPKSYSLNMSKDFVPMCVFSESNQGKLSCEGKVEHKFDMKPHSDNLV 125
Query: 127 EYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVK 186
YG+LCRERT KSMIK R++QVI+ DH + + P+PGMVGLI S SK+KKK P K ++ K
Sbjct: 126 NYGKLCRERTQKSMIKTRKVQVIE-DHRMSLIPLPGMVGLIPSGSKEKKKQTPTKPSDAK 184
Query: 187 RTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYE 246
R RRDR ELE+I+FKLFERQPNWALK LVQETDQP QFLKEILN+LC YNKRG NQGT+E
Sbjct: 185 RIRRDRRELENIIFKLFERQPNWALKALVQETDQPEQFLKEILNDLCFYNKRGPNQGTHE 244
Query: 247 LKPEYKKSVEDGGA 260
LKPEYKKS D A
Sbjct: 245 LKPEYKKSTGDTDA 258
>gi|226506332|ref|NP_001149812.1| LOC100283439 [Zea mays]
gi|195634813|gb|ACG36875.1| ATP binding protein [Zea mays]
gi|219888615|gb|ACL54682.1| unknown [Zea mays]
gi|413945986|gb|AFW78635.1| ATP binding protein [Zea mays]
Length = 269
Score = 336 bits (862), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 172/263 (65%), Positives = 205/263 (77%), Gaps = 19/263 (7%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQP-------VAKVILSLDPLQSD----- 62
L+TA+ADRSVWLMKCP VV+++WQ ++S S VAKV+LSLD L+ +
Sbjct: 8 LETARADRSVWLMKCPPVVSRAWQAASASASSSDAANANPVVAKVVLSLDLLRPEERPEE 67
Query: 63 -----SMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFD 117
++QF ME ++ N PKSYSLNMFKDFVPM VFSESNQGK++ EGKVEHKFD
Sbjct: 68 RPEEPTLQFKMELA--QTNTGNTPKSYSLNMFKDFVPMCVFSESNQGKLSCEGKVEHKFD 125
Query: 118 MKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKA 177
M+PH N+ YG+LCRERT K M+K+RQ+QV+DNDHG+ MRPMPG+VGLI S SK+KKK
Sbjct: 126 MEPHSDNLANYGKLCRERTQKYMVKSRQVQVLDNDHGMSMRPMPGLVGLIPSGSKEKKKQ 185
Query: 178 QPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNK 237
P K ++VKRTRRDR E+E+I+FKLFERQPNWALK LVQETDQP QFLKEILN+LCVYNK
Sbjct: 186 APAKPSDVKRTRRDRTEMENIIFKLFERQPNWALKALVQETDQPEQFLKEILNDLCVYNK 245
Query: 238 RGTNQGTYELKPEYKKSVEDGGA 260
RG NQGT+ELKPEYKKS D A
Sbjct: 246 RGPNQGTHELKPEYKKSTGDTDA 268
>gi|357136669|ref|XP_003569926.1| PREDICTED: transcription initiation factor IIF subunit beta-like
[Brachypodium distachyon]
Length = 261
Score = 329 bits (843), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 162/257 (63%), Positives = 202/257 (78%), Gaps = 13/257 (5%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQ-------DSQPV-AKVILSLDPLQSDS-- 63
+L+T +ADRSVWLMKCP +V+++WQ +++ + PV AKVILSLDPL SD
Sbjct: 7 HLETGRADRSVWLMKCPTIVSRAWQEASAASAAGGPKPNPNPVVAKVILSLDPLSSDDDP 66
Query: 64 MQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEK 123
QF ME N N+PKSYSLNMFKDFVPMSVFSESNQGK+A EGKVE+KFDM+PH +
Sbjct: 67 AQFKMEMAQTDNG--NKPKSYSLNMFKDFVPMSVFSESNQGKLACEGKVEYKFDMEPHRE 124
Query: 124 NMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQT 183
N+ +Y +LCRERT KSMIK R++ V++ D+G+ MRP+ ++ L + K+KKK+ P K +
Sbjct: 125 NLSDYAKLCRERTEKSMIKTRKVHVLEKDNGMGMRPLLNIISL-TPGLKEKKKSIPAKVS 183
Query: 184 EVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQG 243
++KRTRRDRGELE I+FKLFERQPNW+LK L+QETDQP QFLKEI+N+LCVYNKRG NQG
Sbjct: 184 DMKRTRRDRGELEIILFKLFERQPNWSLKHLMQETDQPEQFLKEIMNDLCVYNKRGPNQG 243
Query: 244 TYELKPEYKKSVEDGGA 260
T+ELKPEYKKS ED A
Sbjct: 244 THELKPEYKKSAEDTSA 260
>gi|255587521|ref|XP_002534300.1| Transcription initiation factor IIF subunit beta, putative [Ricinus
communis]
gi|223525544|gb|EEF28082.1| Transcription initiation factor IIF subunit beta, putative [Ricinus
communis]
Length = 278
Score = 328 bits (842), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 160/252 (63%), Positives = 199/252 (78%), Gaps = 13/252 (5%)
Query: 13 GNLDTAKADRSVWLMKCPLVVAKSWQNQASSQD---SQPVAKVILSLDPLQSD----SMQ 65
G L+TA+A+++VWLMKCP +V+ S + SS D S+P+AKVILS++PL S+ S Q
Sbjct: 29 GTLETARAEKAVWLMKCPALVSNSLKKNPSSPDNDPSRPIAKVILSINPLNSNDDNSSRQ 88
Query: 66 FTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNM 125
FTME N+S N PKSYS++M +DF+PM V SES QGKV++EGK+ +KFDM+PH +N+
Sbjct: 89 FTMELAG--NESGNAPKSYSMDMSEDFIPMFVLSESAQGKVSVEGKILYKFDMRPHTENL 146
Query: 126 EEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEV 185
E Y ++CRERT K M K RQIQ+IDND+G HMRPMP M I+S S DKKK P K T+V
Sbjct: 147 ENYAKMCRERTKKYMTKGRQIQIIDNDNGSHMRPMPLM---IASGSNDKKKP-PAKATDV 202
Query: 186 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTY 245
KRTRRDRGE+E IMFKLFERQPNW L+QL+QETDQP QFLK+IL ELCVYN +GTNQG+Y
Sbjct: 203 KRTRRDRGEMEAIMFKLFERQPNWTLRQLIQETDQPEQFLKDILKELCVYNNKGTNQGSY 262
Query: 246 ELKPEYKKSVED 257
ELKPEYK+S E+
Sbjct: 263 ELKPEYKRSTEE 274
>gi|219362667|ref|NP_001136767.1| hypothetical protein [Zea mays]
gi|194696976|gb|ACF82572.1| unknown [Zea mays]
gi|413949783|gb|AFW82432.1| hypothetical protein ZEAMMB73_178832 [Zea mays]
gi|413949784|gb|AFW82433.1| hypothetical protein ZEAMMB73_178832 [Zea mays]
Length = 272
Score = 327 bits (837), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 170/254 (66%), Positives = 205/254 (80%), Gaps = 13/254 (5%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQP-----VAKVILSLDPLQSD------S 63
L+TA+ADRSVWLMKCP VV+++WQ ++S VAKV+LSLD L+ + +
Sbjct: 17 LETARADRSVWLMKCPPVVSRAWQAASASSSDAANANPVVAKVVLSLDLLRQEERPEEPT 76
Query: 64 MQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEK 123
+QF ME ++ N PKSYSLNMFKDFVPM VFSESNQGK++ EGKVEHKFDM+PH
Sbjct: 77 LQFKMEL--AQTNTGNTPKSYSLNMFKDFVPMCVFSESNQGKLSCEGKVEHKFDMEPHSD 134
Query: 124 NMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQT 183
N+ YG+LCRERT K M+K+RQ+QV+DNDHG+ MRPMPG+VGLISS+SK+KKK PVK +
Sbjct: 135 NLANYGKLCRERTQKYMVKSRQVQVLDNDHGMSMRPMPGIVGLISSSSKEKKKQAPVKPS 194
Query: 184 EVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQG 243
+ KRTRRDR E+E+++FKLFERQPNWALK LVQETDQP QFLKEILN+LCVYNKRG NQG
Sbjct: 195 DAKRTRRDRTEMENVIFKLFERQPNWALKALVQETDQPEQFLKEILNDLCVYNKRGPNQG 254
Query: 244 TYELKPEYKKSVED 257
T+ELKPEYKKS D
Sbjct: 255 THELKPEYKKSTGD 268
>gi|218197080|gb|EEC79507.1| hypothetical protein OsI_20575 [Oryza sativa Indica Group]
Length = 259
Score = 325 bits (833), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 168/254 (66%), Positives = 197/254 (77%), Gaps = 11/254 (4%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQ-----DSQPV-AKVILSLDPLQSD--SMQF 66
L+TA+A+RSVWLMKCP VV+ +WQ SS + PV AKV+LSLD L+S+ S+QF
Sbjct: 8 LETARAERSVWLMKCPPVVSHAWQGAVSSSSAAGSNPNPVVAKVVLSLDLLRSEEPSLQF 67
Query: 67 TMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNME 126
ME ++ N PKSYSLNM KDFVPM VFSESNQGK++ EGKVEHKFDMKPH N+
Sbjct: 68 KMEM--AQTNTGNTPKSYSLNMSKDFVPMCVFSESNQGKLSCEGKVEHKFDMKPHSDNLV 125
Query: 127 EYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVK 186
YG+LCRERT KSMIK R++QVI+ DH + + P+PGMVGLI S SK+KKK P K ++ K
Sbjct: 126 NYGKLCRERTQKSMIKTRKVQVIE-DHRMSLIPLPGMVGLIPSGSKEKKKQTPTKPSDAK 184
Query: 187 RTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYE 246
R RRDR ELE+I+FKLFERQPNWALK LVQETDQP QFLKEILN+LC YNKR NQGT+E
Sbjct: 185 RIRRDRRELENIIFKLFERQPNWALKALVQETDQPEQFLKEILNDLCFYNKRRPNQGTHE 244
Query: 247 LKPEYKKSVEDGGA 260
LKPEYKKS D A
Sbjct: 245 LKPEYKKSTGDTDA 258
>gi|356511855|ref|XP_003524637.1| PREDICTED: general transcription factor IIF subunit 2-like [Glycine
max]
Length = 252
Score = 322 bits (824), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 150/249 (60%), Positives = 196/249 (78%), Gaps = 8/249 (3%)
Query: 10 NGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSD----SMQ 65
N G +DT+KA+R+VWLMKCP +V++S + S S+PVAKV++S+DPL S+ Q
Sbjct: 6 NSNGYVDTSKAERAVWLMKCPPLVSRSLR-APPSDPSRPVAKVVVSIDPLNSNDDDSPPQ 64
Query: 66 FTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNM 125
FTME + P+ Y ++M KDF+PMSVFS++ QGK+++EGK+ +KFDM+PH + +
Sbjct: 65 FTMELAGTEAGHI--PRCYVMDMSKDFIPMSVFSDTPQGKISVEGKILNKFDMRPHNQTL 122
Query: 126 EEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEV 185
E YG+LCRERTNK M+K+RQIQVIDND G HMRPMPGM+ +S +KKK+ P K T+
Sbjct: 123 ELYGKLCRERTNKYMVKSRQIQVIDNDSGAHMRPMPGMISFSTSGPSEKKKS-PAKATDT 181
Query: 186 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTY 245
KRTRRDRGE+E+I+FKLFERQPNW+L+ L+QETDQP QFLK+IL +LCVYN +GTNQGTY
Sbjct: 182 KRTRRDRGEMEEIVFKLFERQPNWSLRNLIQETDQPEQFLKDILKDLCVYNNKGTNQGTY 241
Query: 246 ELKPEYKKS 254
ELKPEY+KS
Sbjct: 242 ELKPEYRKS 250
>gi|225449108|ref|XP_002274802.1| PREDICTED: general transcription factor IIF subunit 2 [Vitis
vinifera]
Length = 257
Score = 319 bits (818), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 155/250 (62%), Positives = 203/250 (81%), Gaps = 10/250 (4%)
Query: 13 GNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDS-----MQFT 67
N+DT++++R+VWLMKCP VV++S + ++S +PVAKVI+SLDPL ++ QFT
Sbjct: 9 ANVDTSRSERAVWLMKCPPVVSRSLSSSSASDSLRPVAKVIVSLDPLLANDDDDSPPQFT 68
Query: 68 METTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEE 127
ME +S N PK YS++M +DF+PM+VFSES+QG+ A+EGK+ +KFDMKPH +N++
Sbjct: 69 MELAGT--ESGNAPKCYSMDMSQDFIPMAVFSESSQGRTAVEGKILNKFDMKPHNENIQN 126
Query: 128 YGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKR 187
YG+LCRERT+K M K+RQIQVIDND+G HMRPMPGMV I+S DKKK P K +++KR
Sbjct: 127 YGKLCRERTSKYMTKSRQIQVIDNDNGSHMRPMPGMV--IASAVSDKKK-MPTKGSDMKR 183
Query: 188 TRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYEL 247
TRRDRGE+E+I+FKLFERQPNW L+QL+QETDQP QFLK++L +LCVYN +GTNQGTYEL
Sbjct: 184 TRRDRGEMEEILFKLFERQPNWTLRQLIQETDQPEQFLKDLLKDLCVYNNKGTNQGTYEL 243
Query: 248 KPEYKKSVED 257
KPEYK+S E+
Sbjct: 244 KPEYKRSGEE 253
>gi|296086049|emb|CBI31490.3| unnamed protein product [Vitis vinifera]
Length = 300
Score = 318 bits (814), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 155/250 (62%), Positives = 203/250 (81%), Gaps = 10/250 (4%)
Query: 13 GNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDS-----MQFT 67
N+DT++++R+VWLMKCP VV++S + ++S +PVAKVI+SLDPL ++ QFT
Sbjct: 52 ANVDTSRSERAVWLMKCPPVVSRSLSSSSASDSLRPVAKVIVSLDPLLANDDDDSPPQFT 111
Query: 68 METTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEE 127
ME +S N PK YS++M +DF+PM+VFSES+QG+ A+EGK+ +KFDMKPH +N++
Sbjct: 112 MELAGT--ESGNAPKCYSMDMSQDFIPMAVFSESSQGETAVEGKILNKFDMKPHNENIQN 169
Query: 128 YGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKR 187
YG+LCRERT+K M K+RQIQVIDND+G HMRPMPGMV I+S DKKK P K +++KR
Sbjct: 170 YGKLCRERTSKYMTKSRQIQVIDNDNGSHMRPMPGMV--IASAVSDKKK-MPTKGSDMKR 226
Query: 188 TRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYEL 247
TRRDRGE+E+I+FKLFERQPNW L+QL+QETDQP QFLK++L +LCVYN +GTNQGTYEL
Sbjct: 227 TRRDRGEMEEILFKLFERQPNWTLRQLIQETDQPEQFLKDLLKDLCVYNNKGTNQGTYEL 286
Query: 248 KPEYKKSVED 257
KPEYK+S E+
Sbjct: 287 KPEYKRSGEE 296
>gi|125527873|gb|EAY75987.1| hypothetical protein OsI_03910 [Oryza sativa Indica Group]
gi|222619327|gb|EEE55459.1| hypothetical protein OsJ_03621 [Oryza sativa Japonica Group]
Length = 261
Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 160/254 (62%), Positives = 194/254 (76%), Gaps = 9/254 (3%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSM------QFT 67
NL+TA+ADRSVWLMKCP VV+++WQ A++ S + + S++ +F
Sbjct: 7 NLETARADRSVWLMKCPTVVSRAWQEAATAAASSSSSSDAAAGANSNSNANPNPVVAKFK 66
Query: 68 METTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEE 127
ME N N PKSYSLNMFKDFVPM VFSESNQGK++ EGKV HKFDM+PH N+
Sbjct: 67 MEMAQTGNG--NTPKSYSLNMFKDFVPMCVFSESNQGKLSCEGKVGHKFDMEPHSDNLVN 124
Query: 128 YGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDK-KKAQPVKQTEVK 186
YG+LCRERT KSMIKNR++ V+ ND+G+ MRP+PG+VGL+SS K K KK PVK +++K
Sbjct: 125 YGKLCRERTQKSMIKNRKLMVLANDNGMSMRPLPGLVGLMSSGPKQKEKKPLPVKPSDMK 184
Query: 187 RTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYE 246
RTRRDR ELE+I+FKLFERQPNW+LK L+QETDQP QFLKEILN+LC YNKRG NQGT+E
Sbjct: 185 RTRRDRRELENILFKLFERQPNWSLKNLMQETDQPEQFLKEILNDLCFYNKRGPNQGTHE 244
Query: 247 LKPEYKKSVEDGGA 260
LKPEYKKS ED A
Sbjct: 245 LKPEYKKSTEDADA 258
>gi|294464268|gb|ADE77647.1| unknown [Picea sitchensis]
Length = 293
Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 159/287 (55%), Positives = 194/287 (67%), Gaps = 45/287 (15%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSM---------- 64
DT KADRSVWLMKCPLV+ ++W+ + S QP+AK+ +S+DP ++D
Sbjct: 12 FDTLKADRSVWLMKCPLVIGQAWKEISDS--GQPLAKITVSVDPCKADDQPIEAKVEDPT 69
Query: 65 -----------------------------QFTMETTAVSNDSLNRPKSYSLNMFKDFVPM 95
+F ME A N S+ PKSYSLNM + +PM
Sbjct: 70 APSATRRKVERQQMSSSRSQTQSTHRIKSEFMMEVAA--NGSVTAPKSYSLNMSTEIIPM 127
Query: 96 SVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGV 155
+FSE+++GKVA++GKVEHKFDMKPH KN+++Y RLCRERTNKS K RQ+QVIDND G
Sbjct: 128 YIFSETSEGKVAVDGKVEHKFDMKPHTKNIDDYRRLCRERTNKSNFKARQVQVIDNDRGG 187
Query: 156 HMRPMPGMVGLISSNSKDKK-KAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQL 214
+ PM GM+ + SKDKK A PVK E+KRTR DRGELE+I+FKLFERQ NW LKQL
Sbjct: 188 Y-NPMQGMMDFSTILSKDKKGSAAPVKAQEMKRTRMDRGELENILFKLFERQSNWTLKQL 246
Query: 215 VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDGGAD 261
V ETDQP QF+KEILN+L +YNKRGTNQGTYELKPEYKKS ED A+
Sbjct: 247 VTETDQPQQFIKEILNDLGLYNKRGTNQGTYELKPEYKKSTEDMEAE 293
>gi|413945985|gb|AFW78634.1| hypothetical protein ZEAMMB73_145723 [Zea mays]
Length = 200
Score = 303 bits (775), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 143/196 (72%), Positives = 164/196 (83%), Gaps = 2/196 (1%)
Query: 65 QFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKN 124
QF ME ++ N PKSYSLNMFKDFVPM VFSESNQGK++ EGKVEHKFDM+PH N
Sbjct: 6 QFKMEL--AQTNTGNTPKSYSLNMFKDFVPMCVFSESNQGKLSCEGKVEHKFDMEPHSDN 63
Query: 125 MEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTE 184
+ YG+LCRERT K M+K+RQ+QV+DNDHG+ MRPMPG+VGLI S SK+KKK P K ++
Sbjct: 64 LANYGKLCRERTQKYMVKSRQVQVLDNDHGMSMRPMPGLVGLIPSGSKEKKKQAPAKPSD 123
Query: 185 VKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGT 244
VKRTRRDR E+E+I+FKLFERQPNWALK LVQETDQP QFLKEILN+LCVYNKRG NQGT
Sbjct: 124 VKRTRRDRTEMENIIFKLFERQPNWALKALVQETDQPEQFLKEILNDLCVYNKRGPNQGT 183
Query: 245 YELKPEYKKSVEDGGA 260
+ELKPEYKKS D A
Sbjct: 184 HELKPEYKKSTGDTDA 199
>gi|449452114|ref|XP_004143805.1| PREDICTED: general transcription factor IIF subunit 2-like [Cucumis
sativus]
Length = 277
Score = 299 bits (766), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 151/253 (59%), Positives = 193/253 (76%), Gaps = 11/253 (4%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDS------M 64
G L+T KADR++WL+KCP +V ++ N + S+PVAKVI+S+DPLQS+
Sbjct: 26 GTDFLETNKADRAMWLLKCPQLVTRALSNSPDAP-SRPVAKVIVSVDPLQSNDDDDSSST 84
Query: 65 QFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKN 124
+FTME S DS N +SYSLNM DF+PMSVFSES+QGK +EGK+ +KFDMKPH++N
Sbjct: 85 EFTME--LASTDSGNALRSYSLNMSTDFIPMSVFSESSQGKFTIEGKILNKFDMKPHDQN 142
Query: 125 MEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTE 184
+E YG+LCRERT+KSM K+RQIQVID+ G HMRPMPGM ++S + +KKK K +E
Sbjct: 143 LERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGM-DVLSFGAAEKKKVVS-KGSE 200
Query: 185 VKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGT 244
KR R++RGELE I+FKLFERQP W KQL+QETDQP Q++KEIL +LCVYN +G +QGT
Sbjct: 201 TKRLRKERGELEKIIFKLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGT 260
Query: 245 YELKPEYKKSVED 257
YELKPEY++S ED
Sbjct: 261 YELKPEYRESSED 273
>gi|334185929|ref|NP_190795.3| Transcription initiation factor IIF, beta subunit [Arabidopsis
thaliana]
gi|332645403|gb|AEE78924.1| Transcription initiation factor IIF, beta subunit [Arabidopsis
thaliana]
Length = 269
Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 140/252 (55%), Positives = 187/252 (74%), Gaps = 14/252 (5%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQA-------SSQDSQPVAKVILSLDPL--QSDSMQ 65
L+T A+RS+ LMK P +VA S Q+ + +P AKVIL +DPL + + Q
Sbjct: 23 LETGLAERSMLLMKAPSLVASSLQSHSFPDDPYRPDDPYRPDAKVILGVDPLAHEDEGTQ 82
Query: 66 FTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNM 125
F ME DS N P+ Y+L+M KDF+PM+VF ES+ GK+++EGK+++KFDM+PH +N+
Sbjct: 83 FVMELARA--DSGNMPRRYTLDMSKDFIPMNVFCESSDGKMSVEGKIKNKFDMRPHNENI 140
Query: 126 EEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEV 185
E YGRLCRERTNK M KNRQIQVIDN G+HMRPMPGM+ I + + +KKK + +E+
Sbjct: 141 ESYGRLCRERTNKYMGKNRQIQVIDNARGMHMRPMPGMI--IPTAAPEKKKLTN-RTSEM 197
Query: 186 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTY 245
KRTRRDR E+E++MF LFERQ NW L+ L+QETDQP QFLK++L +LC+YN +G+NQGTY
Sbjct: 198 KRTRRDRREMEEVMFNLFERQSNWTLRLLIQETDQPEQFLKDLLKDLCIYNNKGSNQGTY 257
Query: 246 ELKPEYKKSVED 257
ELKPEYKK+ ++
Sbjct: 258 ELKPEYKKATQE 269
>gi|297819938|ref|XP_002877852.1| hypothetical protein ARALYDRAFT_348323 [Arabidopsis lyrata subsp.
lyrata]
gi|297323690|gb|EFH54111.1| hypothetical protein ARALYDRAFT_348323 [Arabidopsis lyrata subsp.
lyrata]
Length = 258
Score = 281 bits (718), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 139/246 (56%), Positives = 187/246 (76%), Gaps = 8/246 (3%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDS-QPVAKVILSLDPL--QSDSMQFTMETT 71
L+T ADRS+ LMK P +VA S Q+ D +P AKVIL++D L + + +F ME
Sbjct: 18 LETGLADRSMLLMKAPSLVASSLQSLPFPDDPYRPDAKVILNVDLLAPEDEETKFVMELA 77
Query: 72 AVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRL 131
+S N P+ Y+L+M KDF+PM+VF ES+ GK+++EGK+++KFDM+PH +N+E YGRL
Sbjct: 78 RA--ESGNMPRRYTLDMSKDFIPMNVFCESSDGKMSVEGKIKNKFDMRPHNENIESYGRL 135
Query: 132 CRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRD 191
CRERTNK M KNRQIQVIDN G+HMRPMPGM+ I + + +KKK + +E+KRTRRD
Sbjct: 136 CRERTNKYMGKNRQIQVIDNARGMHMRPMPGMI--IPTAAPEKKKLT-NRTSEMKRTRRD 192
Query: 192 RGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEY 251
R E+E++MF LFERQ NW L+ L+QETDQP QFLK++L +LC+YN +G+NQGTYELKPEY
Sbjct: 193 RREMEEVMFNLFERQSNWTLRLLIQETDQPEQFLKDLLRDLCIYNNKGSNQGTYELKPEY 252
Query: 252 KKSVED 257
KK+ ++
Sbjct: 253 KKATQE 258
>gi|224109724|ref|XP_002315290.1| predicted protein [Populus trichocarpa]
gi|222864330|gb|EEF01461.1| predicted protein [Populus trichocarpa]
Length = 266
Score = 273 bits (697), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 141/251 (56%), Positives = 180/251 (71%), Gaps = 27/251 (10%)
Query: 13 GNLDTAKADRSVWLMKCPLVVAKSWQNQA-----SSQDSQPVAKVILSLDPLQSDSMQFT 67
G LD +KA++SVWLMKCP +V++ ++Q S PVAK FT
Sbjct: 33 GFLDASKAEKSVWLMKCPSIVSRFLRSQEHEVGDGDASSPPVAK--------------FT 78
Query: 68 METTAVS-NDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNME 126
ME D L KSYS+ M KD V MSVFSES+QGK+++EG++ +KFD++PH +N+E
Sbjct: 79 MEMAGTGPGDGL---KSYSMEMSKDLVDMSVFSESSQGKLSVEGRILNKFDVRPHSENLE 135
Query: 127 EYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVK 186
Y ++CRERT K M+K+RQI+VIDND G HM PMPGM I S DKKK P+K +++K
Sbjct: 136 NYRKICRERTKKYMVKSRQIKVIDNDTGSHMMPMPGM---IISGLADKKKL-PIKASDMK 191
Query: 187 RTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYE 246
RTRRDR E+E IMFKLFE+QPNW LKQLVQETDQP QF+K++L +LCVYN +G+NQG+YE
Sbjct: 192 RTRRDRREMEGIMFKLFEKQPNWTLKQLVQETDQPEQFVKDMLKDLCVYNNKGSNQGSYE 251
Query: 247 LKPEYKKSVED 257
LKPEYKKS E+
Sbjct: 252 LKPEYKKSNEE 262
>gi|168039739|ref|XP_001772354.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676341|gb|EDQ62825.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 266 bits (679), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 141/244 (57%), Positives = 171/244 (70%), Gaps = 10/244 (4%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPV-AKVILSLDPLQ--SDSMQFTMETT 71
LDT AD+SVWL+K P +V W Q QD PV AKV +S+DPL SDS++F M T
Sbjct: 23 LDTTGADKSVWLLKVPPLVGHQWLKQ---QDGAPVLAKVTMSMDPLNPNSDSVEFMM--T 77
Query: 72 AVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHE-KNMEEYGR 130
D + KSY+LN+ KD VPM +FSE+ QGK+ +EGKVEHKFDMKP N +EY +
Sbjct: 78 LPEKDLVAPHKSYNLNVTKDLVPMHIFSETTQGKLKVEGKVEHKFDMKPSNIGNNDEYRK 137
Query: 131 LCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRR 190
LCR+R NKSM+K R QV+ ND G MRP P + +S K + VK E KR RR
Sbjct: 138 LCRDRLNKSMVKTRTTQVLSNDRGGFMRP-PPIDAWPTSTKKKAPISSAVKAPEGKRIRR 196
Query: 191 DRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPE 250
DR ELE I+FKLFE++PNWALK LV+ETDQP FLKEILN+LC+YNKRG NQGTYELKPE
Sbjct: 197 DRVELEAIVFKLFEQRPNWALKHLVEETDQPVAFLKEILNDLCIYNKRGANQGTYELKPE 256
Query: 251 YKKS 254
YK++
Sbjct: 257 YKRT 260
>gi|302795362|ref|XP_002979444.1| hypothetical protein SELMODRAFT_111128 [Selaginella moellendorffii]
gi|300152692|gb|EFJ19333.1| hypothetical protein SELMODRAFT_111128 [Selaginella moellendorffii]
Length = 270
Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 144/272 (52%), Positives = 182/272 (66%), Gaps = 23/272 (8%)
Query: 6 SNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDS---------QPVAKVILSL 56
S +G LD A+A+ VWL+K P +VA +W Q SS S +AKV +
Sbjct: 2 SGADDGSVPLDVAQAEGQVWLLKLPAIVATAWNAQDSSGKSVAAGAGPADPTLAKVTCTF 61
Query: 57 DPLQSD---SMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVE 113
DPL D +++FTME + + K+YSLN+ KD VP +FS++ QG++A+EGKVE
Sbjct: 62 DPLNPDPEAALEFTMELSGPDDI-----KAYSLNLQKDVVPTHIFSDT-QGRLAVEGKVE 115
Query: 114 HKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRP-MPGMVGLISSNSK 172
KFD+KP+ K EEY +LCRER K +K R IQV+ +D G MRP +P + L SS
Sbjct: 116 RKFDIKPNSKAREEYRQLCRERDRKFNMKTRTIQVLKDDRGNLMRPALPPTIMLQSSKDA 175
Query: 173 DKKKAQPV--KQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILN 230
K+KA PV K + KRTRR+RGELED +FKLFE+Q NWALKQLVQ TDQP FLKEILN
Sbjct: 176 AKRKA-PVNAKNNDGKRTRRERGELEDHVFKLFEQQANWALKQLVQRTDQPVAFLKEILN 234
Query: 231 ELCVYNKRGTNQGTYELKPEYKKS-VEDGGAD 261
+LC YNKRGTNQGTYELKPEY+K+ VE+ AD
Sbjct: 235 DLCTYNKRGTNQGTYELKPEYRKNPVEEKPAD 266
>gi|302792232|ref|XP_002977882.1| transcription factor [Selaginella moellendorffii]
gi|300154585|gb|EFJ21220.1| transcription factor [Selaginella moellendorffii]
Length = 262
Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 140/264 (53%), Positives = 177/264 (67%), Gaps = 22/264 (8%)
Query: 6 SNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDS---------QPVAKVILSL 56
S +G LD A+A+ VWL+K P +VA +W Q SS S +AKV +
Sbjct: 2 SGADDGSVPLDVAQAEGQVWLLKLPAIVATAWNAQDSSGKSVAAGAGPADPTLAKVTCTF 61
Query: 57 DPLQSD---SMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVE 113
DPL D +++FTME + + K+YSLN+ KD VP +FS++ QG++A+EGKVE
Sbjct: 62 DPLNPDPEAALEFTMELSGPDDI-----KAYSLNLQKDVVPTHIFSDT-QGRLAVEGKVE 115
Query: 114 HKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRP-MPGMVGLISSNSK 172
KFD+KP+ K EEY +LCRER K +K R IQV+ +D G MRP +P + L SS
Sbjct: 116 RKFDIKPNSKAREEYRQLCRERDRKFNMKTRTIQVLKDDRGNLMRPALPPTIMLQSSKDA 175
Query: 173 DKKKAQPV--KQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILN 230
K+KA PV K + KRTRR+RGELED +FKLFE+Q NWALKQLVQ TDQP FLKEILN
Sbjct: 176 AKRKA-PVNAKNNDGKRTRRERGELEDHVFKLFEQQANWALKQLVQRTDQPVAFLKEILN 234
Query: 231 ELCVYNKRGTNQGTYELKPEYKKS 254
+LC YNKRGTNQGTYELKPEY+K+
Sbjct: 235 DLCTYNKRGTNQGTYELKPEYRKN 258
>gi|449521623|ref|XP_004167829.1| PREDICTED: general transcription factor IIF subunit 2-like [Cucumis
sativus]
Length = 190
Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 120/185 (64%), Positives = 149/185 (80%), Gaps = 2/185 (1%)
Query: 73 VSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLC 132
S DS N +SYSLNM DF+PMSVFSES+QGK +EGK+ +KFDMKPH++N+E YG+LC
Sbjct: 4 ASTDSGNALRSYSLNMSTDFIPMSVFSESSQGKFTIEGKILNKFDMKPHDQNLERYGKLC 63
Query: 133 RERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDR 192
RERT+KSM K+RQIQVID+ G HMRPMPGM ++S + +KKK K +E KR R++R
Sbjct: 64 RERTHKSMTKSRQIQVIDHVTGGHMRPMPGM-DVLSFGAAEKKKVVS-KGSETKRLRKER 121
Query: 193 GELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK 252
GELE I+FKLFERQP W KQL+QETDQP Q++KEIL +LCVYN +G +QGTYELKPEY+
Sbjct: 122 GELEKIIFKLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYR 181
Query: 253 KSVED 257
+S ED
Sbjct: 182 ESSED 186
>gi|10045560|emb|CAC07918.1| putative protein [Arabidopsis thaliana]
Length = 376
Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 119/227 (52%), Positives = 158/227 (69%), Gaps = 35/227 (15%)
Query: 61 SDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQ----------------- 103
S ++QF ME DS N P+ Y+L+M KDF+PM+VF ES+
Sbjct: 155 SFALQFVMELARA--DSGNMPRRYTLDMSKDFIPMNVFCESSDDFGSLGEEFSIGMFIYS 212
Query: 104 -GKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPG 162
GK+++EGK+++KFDM+PH +N+E YGRLCRERTNK M KNRQIQVIDN G+HMRPMPG
Sbjct: 213 PGKMSVEGKIKNKFDMRPHNENIESYGRLCRERTNKYMGKNRQIQVIDNARGMHMRPMPG 272
Query: 163 MVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPA 222
M+ I + + +KKK + +E+KRTRRDR E+E++MF LFERQ NW L+ L+QETDQP
Sbjct: 273 MI--IPTAAPEKKKLTN-RTSEMKRTRRDRREMEEVMFNLFERQSNWTLRLLIQETDQPE 329
Query: 223 ------------QFLKEILNELCVYNKRGTNQGTYELKPEYKKSVED 257
QFLK++L +LC+YN +G+NQGTYELKPEYKK+ ++
Sbjct: 330 VCVAYGKVYLVQQFLKDLLKDLCIYNNKGSNQGTYELKPEYKKATQE 376
Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 7/55 (12%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQA-------SSQDSQPVAKVILSLDPLQSD 62
L+T A+RS+ LMK P +VA S Q+ + +P AKVIL +DPL +
Sbjct: 18 LETGLAERSMLLMKAPSLVASSLQSHSFPDDPYRPDDPYRPDAKVILGVDPLAHE 72
>gi|147863867|emb|CAN81117.1| hypothetical protein VITISV_005903 [Vitis vinifera]
Length = 584
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 120/278 (43%), Positives = 164/278 (58%), Gaps = 77/278 (27%)
Query: 1 MEDDQSNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQ 60
M + SN+ N +DT++++R+VWLMKCP VV++S + ++S +PVAKVI+SLDPL
Sbjct: 1 MAEGSSNNAN----VDTSRSERAVWLMKCPPVVSRSLSSSSASDSLRPVAKVIVSLDPLL 56
Query: 61 S-------------------DSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSES 101
+ D FTME +S N PK YS++M +DF+PM+VFSES
Sbjct: 57 ANDDDDSPPQGFMIAHEHAFDYELFTMELAG--TESGNAPKCYSMDMSQDFIPMAVFSES 114
Query: 102 NQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMP 161
+QG+ A+EGK+ +KFDMKPH +N++ YG+LCRERT+K M K+RQIQVIDND+G HMRPMP
Sbjct: 115 SQGRTAVEGKILNKFDMKPHNENIQNYGKLCRERTSKYMTKSRQIQVIDNDNGSHMRPMP 174
Query: 162 GMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
GMV I+S A+ Q +
Sbjct: 175 GMV--IAS----------------------------------------AVSQFL------ 186
Query: 222 AQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDGG 259
K++L +LCVYN +GTNQGTYELKPEYK+ ++ G
Sbjct: 187 ----KDLLKDLCVYNNKGTNQGTYELKPEYKRKRKEIG 220
>gi|255585869|ref|XP_002533609.1| ATP binding protein, putative [Ricinus communis]
gi|223526510|gb|EEF28778.1| ATP binding protein, putative [Ricinus communis]
Length = 139
Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 101/131 (77%), Positives = 110/131 (83%), Gaps = 5/131 (3%)
Query: 27 MKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSD-SMQFTMETTAVSNDSLNRPKSYS 85
MKCPLVVA+SW++ ASS DS PV KV+LSLDPL+SD S+QFTME N N PKSYS
Sbjct: 1 MKCPLVVARSWKSHASSSDSHPVDKVVLSLDPLRSDDSLQFTMEMAGTENG--NVPKSYS 58
Query: 86 LNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQ 145
LNMFKDFVPMSVFSE+ QG+VAMEGKVEHKFDM PHE+N EEYG LCRERTNKSMIKNRQ
Sbjct: 59 LNMFKDFVPMSVFSETTQGRVAMEGKVEHKFDMNPHEENTEEYGSLCRERTNKSMIKNRQ 118
Query: 146 IQVIDNDHGVH 156
I IDND GVH
Sbjct: 119 I--IDNDRGVH 127
>gi|297819942|ref|XP_002877854.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297323692|gb|EFH54113.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 130
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/152 (50%), Positives = 109/152 (71%), Gaps = 22/152 (14%)
Query: 106 VAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVG 165
+++EGK+++K+DM+PH +N+E Y VID+ G+HMRPMP M+
Sbjct: 1 MSVEGKIKNKYDMRPHNENIESY-------------------VIDDARGMHMRPMPEMI- 40
Query: 166 LISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFL 225
I + + +KKK + +E+KRTRRDR E+E++MF LFERQ NW L+ L+QETDQP QFL
Sbjct: 41 -IPTAAPEKKKLTN-RTSEMKRTRRDRREMEEVMFNLFERQSNWTLRLLIQETDQPEQFL 98
Query: 226 KEILNELCVYNKRGTNQGTYELKPEYKKSVED 257
K++L +LC+YN +G+NQGTYELKPEYKK+ ++
Sbjct: 99 KDLLRDLCIYNNKGSNQGTYELKPEYKKATQE 130
>gi|224032837|gb|ACN35494.1| unknown [Zea mays]
Length = 107
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 80/103 (77%), Positives = 92/103 (89%)
Query: 155 VHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQL 214
+ MRPMPG+VGLISS+SK+KKK PVK ++ KRTRRDR E+E+++FKLFERQPNWALK L
Sbjct: 1 MSMRPMPGIVGLISSSSKEKKKQAPVKPSDAKRTRRDRTEMENVIFKLFERQPNWALKAL 60
Query: 215 VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVED 257
VQETDQP QFLKEILN+LCVYNKRG NQGT+ELKPEYKKS D
Sbjct: 61 VQETDQPEQFLKEILNDLCVYNKRGPNQGTHELKPEYKKSTGD 103
>gi|168039837|ref|XP_001772403.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676390|gb|EDQ62874.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 262
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 92/221 (41%), Positives = 118/221 (53%), Gaps = 46/221 (20%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPV-AKVILSLDPLQ--SDSMQFTMETT 71
LDT AD+SVWL+K P +V W Q QD PV AKV +S+DPL SDS++F M T
Sbjct: 23 LDTTGADKSVWLLKVPPLVGHQWLKQ---QDGAPVLAKVTMSMDPLNPNSDSVEFMM--T 77
Query: 72 AVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQ-------------------------GKV 106
D + KSY+LN+ KD VPM +FSE+ Q K+
Sbjct: 78 LPEKDLVAPHKSYNLNVTKDLVPMHIFSETTQEDEEAACGGVRIGKADVWKQTQACGWKL 137
Query: 107 AMEGKVEHKFDMKPHE-KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVG 165
+EGKVEHKFDMKP N +EY +LCR+R NKSM+K R QV+ ND G MRP P +
Sbjct: 138 KVEGKVEHKFDMKPSNIGNNDEYRKLCRDRLNKSMVKTRTTQVLSNDRGGFMRPPP--ID 195
Query: 166 LISSNSKDKKKAQPVKQTEVK----------RTRRDRGELE 196
+++ K V+ + V+ R RRDRGE E
Sbjct: 196 AWPTSTFTGKGCSGVEWSGVEARVGVTRFEVRFRRDRGEAE 236
>gi|297720443|ref|NP_001172583.1| Os01g0772200 [Oryza sativa Japonica Group]
gi|255673728|dbj|BAH91313.1| Os01g0772200 [Oryza sativa Japonica Group]
Length = 138
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/130 (56%), Positives = 87/130 (66%), Gaps = 24/130 (18%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQP--------------------VAKVI 53
NL+TA+ADRSVWLMKCP VV+++WQ A++ S VAKVI
Sbjct: 7 NLETARADRSVWLMKCPTVVSRAWQEAATAAASSSSSSDAAAGANSNSNANPNPVVAKVI 66
Query: 54 LSLDPLQSDS--MQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGK 111
+SLDPL+S+ +QF ME N N PKSYSLNMFKDFVPM VFSESNQGK++ EGK
Sbjct: 67 VSLDPLRSEDQQLQFKMEMAQTGNG--NTPKSYSLNMFKDFVPMCVFSESNQGKLSCEGK 124
Query: 112 VEHKFDMKPH 121
V HKFDM+PH
Sbjct: 125 VGHKFDMEPH 134
>gi|308811420|ref|XP_003083018.1| putative transcription initiation factor (ISS) [Ostreococcus tauri]
gi|116054896|emb|CAL56973.1| putative transcription initiation factor (ISS) [Ostreococcus tauri]
Length = 347
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/251 (30%), Positives = 132/251 (52%), Gaps = 22/251 (8%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSM----QFTMET 70
LDT +AD + W++K P V++ + A++ P + + +D Q+D Q ME
Sbjct: 101 LDTKRADHAAWIIKVPKFVSRVLHDAAAANIQMPSMEDDMDVDMTQTDKTKAMTQGVMEL 160
Query: 71 TAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQG-------KVAMEGKVEHKFDMKPHEK 123
T ++ + PK Y L +PM VFS+ +G + +E +++ K DM+P
Sbjct: 161 TG--KEAASVPKKYILANQATDMPMHVFSDVREGLKLGGHQDITLEARIDLKLDMRPSSI 218
Query: 124 NMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQT 183
+ +Y R+ +ER ++ K R V + + P+P L+ + A V
Sbjct: 219 DDVDYNRVSKERMEQAQTKTR---VTQSSSEMRFAPLPKRANLV------RFTADAVGAK 269
Query: 184 EVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQG 243
K+ R ++ LE+++F LFE+QP W++KQL+ E+ QPA +LK L+E+ + +RG N G
Sbjct: 270 TEKKERMEKKALENLLFGLFEKQPYWSMKQLLLESKQPADWLKTNLSEIAILTRRGPNMG 329
Query: 244 TYELKPEYKKS 254
+ LKPE+K++
Sbjct: 330 LWGLKPEWKQA 340
>gi|384498641|gb|EIE89132.1| hypothetical protein RO3G_13843 [Rhizopus delemar RA 99-880]
Length = 298
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 130/243 (53%), Gaps = 20/243 (8%)
Query: 19 KADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLD---PLQSDSMQFTMETTAVSN 75
+AD VWL+K P +A++W+N QD+ + + + D P +S + + +++
Sbjct: 34 QADNKVWLVKVPKFLAETWKN--IDQDNVHLGSLRIYKDAQPPGKSSRISLVLPENTMTS 91
Query: 76 DSLNRPKSYSLNMFKDFVPMS-VFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRE 134
+ PK YS+++ V VFS++ GK + G V H+ P E N Y + R+
Sbjct: 92 ---HIPKEYSISLLSAEVQNKFVFSQTEHGKT-ISGTVHHECVAVPTEANA--YRNIMRK 145
Query: 135 RTNKSMIKNRQIQVIDNDHGVHMRPM--PGMVGLISSN--SKDKKKAQPVKQTEVKRTRR 190
R ++ R QV+ G + +P+ PG + S+ S +P + K TR
Sbjct: 146 RVREAGTPQRTTQVL----GQNNQPVFVPGASSAVPSSDFSDFVTSKKPKTDNKEKATRM 201
Query: 191 DRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPE 250
R EL D++F F+R P W+ K +++ET QP+Q+LKEIL+E+C+ NKRG G Y+LK E
Sbjct: 202 PRNELMDLLFAAFDRYPYWSFKGILEETKQPSQYLKEILSEICILNKRGPYAGNYQLKQE 261
Query: 251 YKK 253
YK+
Sbjct: 262 YKQ 264
>gi|328767698|gb|EGF77747.1| hypothetical protein BATDEDRAFT_20656 [Batrachochytrium
dendrobatidis JAM81]
Length = 299
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 133/247 (53%), Gaps = 27/247 (10%)
Query: 21 DRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLD-PLQSDSMQFTMETTAVSND--S 77
D +VWL+K P +A+ W + + + +V + + +Q ++ + T+ + ++ S
Sbjct: 40 DNAVWLVKVPNFLAEKWMQIGFTHAGKDLGQVRIDKESTMQGNNPKVTLH---IPDEPWS 96
Query: 78 LNRPKSYSLNMFKDFVPMS--VFSESNQGK-VAMEGKVEHKFDMKP---HEKNMEEYGRL 131
+ PK+Y+L F + P + VF+E++QG+ V + G V+H+ + P + Y R+
Sbjct: 97 ADLPKNYNLK-FTNLAPKNEYVFTETSQGRAVGIAGIVQHEATVSPMVTDATHSAHYQRI 155
Query: 132 CRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKA--QPVKQTEV---- 185
++RT + +R +++ID + H R L+ S S D A + +KQ +
Sbjct: 156 MKKRTTTAATPSRVVKMIDENKTEHRR-------LMGSASSDTWNAGLEHIKQKKSSKSL 208
Query: 186 -KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGT 244
KR R R +L +++F LF P W K LV++T QP +LKEIL E+C+ NKRG G
Sbjct: 209 DKRERMTRSDLLNVLFPLFSGYPYWNFKGLVEQTKQPHAWLKEILAEVCILNKRGPYTGM 268
Query: 245 YELKPEY 251
Y+LKPE+
Sbjct: 269 YQLKPEF 275
>gi|384254108|gb|EIE27582.1| winged helix DNA-binding domain-containing protein [Coccomyxa
subellipsoidea C-169]
Length = 189
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 105/180 (58%), Gaps = 9/180 (5%)
Query: 81 PKSYSLNMFKD-FVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEE-----YGRLCRE 134
P+++ L D F P VF++ QG+++ EG+V+ KFD+ + Y ++ R+
Sbjct: 2 PQAFDLTEQTDNFAPTLVFADL-QGRLSAEGRVKRKFDLVMKSSGDLDALDPAYRQINRD 60
Query: 135 RTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGE 194
R+ K+ K R +QV+ MRP G V +S +K+ + + K +R R ++ +
Sbjct: 61 RSAKAAAKTRTMQVLSEAPDTQMRP--GAVQRVSFGNKESTRKRFEKGQFERRARMEKDD 118
Query: 195 LEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKS 254
LE+++F+LFERQ W QL +ETDQPA +LKE+L E+ V NKRG N +ELK EY+ +
Sbjct: 119 LENLLFRLFERQSRWNFIQLQKETDQPAVWLKEVLGEVAVLNKRGPNANLWELKKEYRAA 178
>gi|255585871|ref|XP_002533610.1| conserved hypothetical protein [Ricinus communis]
gi|223526511|gb|EEF28779.1| conserved hypothetical protein [Ricinus communis]
Length = 60
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/55 (96%), Positives = 54/55 (98%)
Query: 185 VKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRG 239
+KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNEL VYNKRG
Sbjct: 1 MKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELYVYNKRG 55
>gi|412985430|emb|CCO18876.1| predicted protein [Bathycoccus prasinos]
Length = 376
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 126/274 (45%), Gaps = 45/274 (16%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQN-------------------QASSQDSQPVAKVILS 55
LDT +A+ WL+K P V ++W++ A D+ + KV +
Sbjct: 106 LDTQRANHRAWLVKVPNFVDRAWKSFSDRRSKADNENDEDGMDIDAELNDNDELGKVRVV 165
Query: 56 LDPLQSDSMQ-FTMETTAVSNDSLNR--PKSYSLNMFKDFVPMSVFSESNQGKVA----- 107
+DP ++ + F + A N+ P Y + + + VFSE+ +G A
Sbjct: 166 IDPFDKENKEAFAVTLNAAVNEDEEHEIPVKYIMTENIEAPEIHVFSETREGTAAATSAM 225
Query: 108 ------MEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMP 161
+E KV K DM+P + + Y R+ + R K+ K+R +Q + + P+P
Sbjct: 226 DVNEFIVEAKVHKKLDMRPKDASDAAYARVSKNRLEKAQSKSRFVQSVVGADAARIAPLP 285
Query: 162 GMVGLI--SSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETD 219
L+ + K KA+ + ++ +L D +F LFER+ W+LKQL++ET
Sbjct: 286 KRSNLVRLADGGVTKPKAE----------KMEKAQLTDKLFGLFERRTFWSLKQLLEETK 335
Query: 220 QPAQFLKEILNELCVYNKRGTNQGTYELKPEYKK 253
QPA L+E + E+ +RG N G Y LK Y++
Sbjct: 336 QPAMHLRETVQEIANLARRGPNNGMYSLKDIYRQ 369
>gi|348681790|gb|EGZ21606.1| hypothetical protein PHYSODRAFT_354403 [Phytophthora sojae]
Length = 249
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 128/242 (52%), Gaps = 20/242 (8%)
Query: 21 DRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSM------QFTMETTAVS 74
DR V+L K P + SW+N S+ ++L L+ S+ T+ + +
Sbjct: 17 DREVYLAKIPTALGASWKNVQESE-------LMLGSIKLEKKSVLGRRKGMLTVNPSTLE 69
Query: 75 NDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRE 134
+D P Y + + + + + VFS G++A+EG V++ + + +Y ++C++
Sbjct: 70 DDI---PTEYRIEISETPLKLKVFSLDGSGRMAIEGTVKNSCTVMAQRND--QYSKMCKQ 124
Query: 135 RTNKSMIKNRQIQVIDNDHGVH-MRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRG 193
R KSM+K R +Q +++ V R + + N +D ++ + +++ K+ + +
Sbjct: 125 RLIKSMVKTRIVQPLEDLPRVKKARIQFTIEKPDAENEEDDADSKLLDKSD-KKIKMSKD 183
Query: 194 ELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKK 253
EL++++F FE + W LK+L QP FLKE+L E+CVY+++G N+ YELKP+YK
Sbjct: 184 ELKNLVFHHFEEREYWPLKELNYHCRQPESFLKEVLKEICVYHRKGPNKSCYELKPQYKD 243
Query: 254 SV 255
V
Sbjct: 244 GV 245
>gi|19111874|ref|NP_595082.1| transcription factor TFIIF complex beta subunit Tfg2 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|74582884|sp|O94424.1|T2FB_SCHPO RecName: Full=Transcription initiation factor IIF subunit beta;
AltName: Full=ATP-dependent helicase TFG2; AltName:
Full=TFIIF medium subunit; AltName: Full=TFIIF-beta
gi|7801320|emb|CAB91188.1| transcription factor TFIIF complex beta subunit Tfg2 (predicted)
[Schizosaccharomyces pombe]
Length = 307
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 130/261 (49%), Gaps = 21/261 (8%)
Query: 2 EDDQSNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQS 61
EDD+ + + G+LD + VWL+K P + W N D+ + V +++
Sbjct: 12 EDDR--YEDDAGDLDLGQIGSRVWLVKIPKFLMDKW-NSIPEDDAANLGCV-----RVKN 63
Query: 62 DSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMS-VFSESNQGK----VAMEGKVEHKF 116
D +Q ++ + + D PK Y+L + FV S VF ES A+ G V H+
Sbjct: 64 DEIQLLLQNSPENADV---PKIYNLRVMNKFVRNSYVFRESETSSSMKSTALVGTVAHEC 120
Query: 117 DMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLIS-SNSKDKK 175
++ P ++Y R+ ++R + R++Q+ID+ G + PG +G S S + +
Sbjct: 121 NVSPVIN--DDYRRVMQKRALAASAPKRKVQMIDDRGGSLL--APGTLGSRSRSTTSFIR 176
Query: 176 KAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVY 235
+P +K +R R EL DI+FK FE W LK L + QP +LKE+L+ + +
Sbjct: 177 NVKPRTGEGLKNSRIPRNELLDILFKCFEDYEYWTLKGLREYVKQPEVYLKEVLDSIAIL 236
Query: 236 NKRGTNQGTYELKPEYKKSVE 256
NKRG Y LKPEYK +++
Sbjct: 237 NKRGPYALKYSLKPEYKGTMD 257
>gi|213410311|ref|XP_002175925.1| transcription initiation factor IIF subunit beta
[Schizosaccharomyces japonicus yFS275]
gi|212003972|gb|EEB09632.1| transcription initiation factor IIF subunit beta
[Schizosaccharomyces japonicus yFS275]
Length = 298
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 127/259 (49%), Gaps = 19/259 (7%)
Query: 3 DDQSNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSD 62
+++ + + G+LDT+ VWL+K P + W + + L + +D
Sbjct: 8 EEEDKYEDETGDLDTSGIASRVWLVKLPKFLLDKWNSIPPDHAAD------LGCVRVMND 61
Query: 63 SMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMS-VFSE----SNQGKVAMEGKVEHKFD 117
+Q + +A ++++ PK Y+L + +V S VF E S + A+ G V H+ +
Sbjct: 62 EIQLLLRDSA---ENMDVPKEYNLKVMNKYVRNSYVFREFEQPSGSKQTALVGTVAHECN 118
Query: 118 MKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLIS-SNSKDKKK 176
+ P ++Y R+ +R + R++Q+ID+ G + PG +G S S + +
Sbjct: 119 VSPVIN--DDYRRVMHKRALAASAPRRRVQMIDDRGGSLL--APGTLGARSRSTTSFIRN 174
Query: 177 AQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYN 236
+P +K R R EL DI+FK FE W LK L + QP +LKE+L+ + V N
Sbjct: 175 VKPRTGEVLKNARIPRNELLDILFKCFEDYEYWTLKGLREYVKQPEVYLKEVLDSIAVLN 234
Query: 237 KRGTNQGTYELKPEYKKSV 255
KRG Y LKPEYK ++
Sbjct: 235 KRGPYALKYSLKPEYKGTM 253
>gi|145357023|ref|XP_001422722.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582965|gb|ABP01039.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 241
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 121/253 (47%), Gaps = 27/253 (10%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDS---------MQ 65
LDT + DR+ WL+K P V++ + A++ + D + D
Sbjct: 1 LDTTRGDRNAWLVKVPKFVSRVFHEAAAASKQAMADDDDMDTDTKEEDEPAIGTVRHMTH 60
Query: 66 FTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSE------SNQGKVAMEGKVEHKFDMK 119
ME T + + PK Y L +PM VFS+ S Q + +E KV+ K DM+
Sbjct: 61 AIMELTGKEANGV--PKQYILANQPSDMPMRVFSDVREGTTSGQADITLEAKVDLKLDMR 118
Query: 120 PHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQP 179
P + +Y R+ ++R ++ K R V + + P+P LI +
Sbjct: 119 PTSIDDVDYHRVSKDRMIQAQTKTR---VTQSSSEMRFAPLPKARNLI-------RFTDA 168
Query: 180 VKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRG 239
+ K+ R ++ LE+++F LFERQP W+LKQL+ ET QP +LK L E+ + +RG
Sbjct: 169 ASNKKEKKERMEKKALENVLFGLFERQPYWSLKQLILETKQPVDWLKTNLGEIALLTRRG 228
Query: 240 TNQGTYELKPEYK 252
N G + LKPE+K
Sbjct: 229 PNMGLWGLKPEWK 241
>gi|328874575|gb|EGG22940.1| TFIIF subunit [Dictyostelium fasciculatum]
Length = 243
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 120/245 (48%), Gaps = 31/245 (12%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPV----AKVILSLDPLQSDSMQFTMET 70
L+T A+ WL+K P + W ++ + + + + + L++ +++ +F + T
Sbjct: 13 LNTDNAENQAWLVKVPKFLVDHWMSRGADAEIGKLYFKSSNLSLTISGTTNENEEFQLAT 72
Query: 71 TAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGR 130
T V + P+ +FSE + +A+EG V K D++ + + + Y
Sbjct: 73 TPVIESN----------------PLKIFSEDKENALALEGSVGLKCDIRMN-VDSKGYRE 115
Query: 131 LCRERTNKSMIKNRQIQVIDNDHGVHMR---PMPGMVGLISSNSKDKKKAQPVKQTEVKR 187
LCR R+ K RQ + ++ + P+ V +++ K KK+ E KR
Sbjct: 116 LCRGRSESYNTKTRQSKTLEGHQTSIFKNHNPIKPTVSTLAAVMKTKKQ-------EDKR 168
Query: 188 TRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYEL 247
R EL D++F LFE + W LK L+ T+QP +LK++L +C+ NKRG ++ YE+
Sbjct: 169 ERMAEDELVDLLFHLFEEKTYWDLKSLISRTEQPQAWLKQVLERICILNKRGPHRNYYEI 228
Query: 248 KPEYK 252
K EYK
Sbjct: 229 KSEYK 233
>gi|126337679|ref|XP_001363893.1| PREDICTED: general transcription factor IIF subunit 2-like
[Monodelphis domestica]
Length = 249
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 133/250 (53%), Gaps = 22/250 (8%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ + +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKASGRGEVGKLRIAKNQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S F+ ++VF+ES+ K+++EG V + + +P
Sbjct: 61 ELANIHDIGGKPASVSAPREHPFLLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y RL R + +S R Q +D + +P+ +N ++ + + K+
Sbjct: 121 S--ENYMRLKRLQIEESSKPVRLSQQLDKAVTTNFKPV--------ANHQNNIEYEKKKK 170
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQ 242
+ KR R D+ ++ D++F FE+ + +K LV T QP +LKEIL E+ +YN +GT++
Sbjct: 171 EDGKRARADKQQVLDMLFSAFEKHQYYNIKDLVDITKQPVIYLKEILREIGIYNVKGTHK 230
Query: 243 GTYELKPEYK 252
T+ELKPEY+
Sbjct: 231 NTWELKPEYR 240
>gi|301107059|ref|XP_002902612.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262098486|gb|EEY56538.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 243
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 115/235 (48%), Gaps = 12/235 (5%)
Query: 21 DRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAVSNDSLNR 80
DR V+L K P + SW+N S + L+ + M T S +
Sbjct: 17 DREVYLAKIPTALGASWKNVQGS----------IKLEKKSVLGRRKGMLTVNPSTLEDDI 66
Query: 81 PKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSM 140
P Y + + + + + VFS G++A+EG V++ + + +Y ++C++R KSM
Sbjct: 67 PTEYRVEISETPLKLKVFSLDGSGRMAIEGTVKNSCTIMAQRND--QYSKMCKQRLIKSM 124
Query: 141 IKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMF 200
+K R +Q +++ V + + +++ + K+ + + EL++++F
Sbjct: 125 VKTRIVQPLEDLPRVKKARIQFTIEKPDPEAEEDDADAKLLDKSDKKIKMSKDELKNLVF 184
Query: 201 KLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSV 255
FE + W LK+L QP LKE+L E+CVY+++G N+ YELKP+YK V
Sbjct: 185 HHFEEREYWPLKELNYHCRQPESLLKEVLKEICVYHRKGPNKSCYELKPQYKDGV 239
>gi|325179554|emb|CCA13952.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 329
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 122/246 (49%), Gaps = 29/246 (11%)
Query: 21 DRSVWLMKCPLVVAKSWQNQASSQDSQPVAKV-----------ILSLDPLQSDSMQFTME 69
DR ++L K P + SW+ S K+ +L+++P+ D
Sbjct: 61 DREIYLAKIPTALGASWKKIKESDLMLGSIKLNETGADGRRRGLLNVNPMTIDD------ 114
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYG 129
P Y + + + + VFS+ G++A+EG V + + + +Y
Sbjct: 115 ---------EVPTEYRIEIGPTPLKLKVFSQDGSGRMAIEGTVSNSCTIIAQRND--QYS 163
Query: 130 RLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTR 189
++C++R +SM+K R +Q +++ V + + ++++ +++ ++ + K+ +
Sbjct: 164 KMCKQRLLRSMVKTRIVQPLEDLPRVKKARIQFTIDKPDPDTEEAIESKISERLD-KKVK 222
Query: 190 RDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKP 249
+ EL+D++F F+ + W LK+L QP FLKE+L E+CVY+++G N+ YELKP
Sbjct: 223 MSKDELKDLVFHHFDERDFWPLKELNSHCRQPESFLKEVLKEICVYHRKGPNKSCYELKP 282
Query: 250 EYKKSV 255
+YK V
Sbjct: 283 QYKDGV 288
>gi|325179553|emb|CCA13951.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 330
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 122/246 (49%), Gaps = 29/246 (11%)
Query: 21 DRSVWLMKCPLVVAKSWQNQASSQDSQPVAKV-----------ILSLDPLQSDSMQFTME 69
DR ++L K P + SW+ S K+ +L+++P+ D
Sbjct: 62 DREIYLAKIPTALGASWKKIKESDLMLGSIKLNETGADGRRRGLLNVNPMTIDD------ 115
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYG 129
P Y + + + + VFS+ G++A+EG V + + + +Y
Sbjct: 116 ---------EVPTEYRIEIGPTPLKLKVFSQDGSGRMAIEGTVSNSCTIIAQRND--QYS 164
Query: 130 RLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTR 189
++C++R +SM+K R +Q +++ V + + ++++ +++ ++ + K+ +
Sbjct: 165 KMCKQRLLRSMVKTRIVQPLEDLPRVKKARIQFTIDKPDPDTEEAIESKISERLD-KKVK 223
Query: 190 RDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKP 249
+ EL+D++F F+ + W LK+L QP FLKE+L E+CVY+++G N+ YELKP
Sbjct: 224 MSKDELKDLVFHHFDERDFWPLKELNSHCRQPESFLKEVLKEICVYHRKGPNKSCYELKP 283
Query: 250 EYKKSV 255
+YK V
Sbjct: 284 QYKDGV 289
>gi|260800648|ref|XP_002595210.1| hypothetical protein BRAFLDRAFT_100378 [Branchiostoma floridae]
gi|229280454|gb|EEN51222.1| hypothetical protein BRAFLDRAFT_100378 [Branchiostoma floridae]
Length = 249
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 121/249 (48%), Gaps = 30/249 (12%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQN---------QASSQDSQPVAKVILSL--DPLQSDS 63
LD + ++WL+K P ++ W + + + P +VI SL D Q D
Sbjct: 8 LDCKGSSNNLWLVKVPKYMSNKWMTVEDGEVGTLKINRRPGAPKPEVIFSLKEDLAQRDD 67
Query: 64 MQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEK 123
+ N R + L+ PM VFS+++ G +A+EGKV H+ D +P
Sbjct: 68 GK--------GNSEAPREHKFVLSGTAG-QPMGVFSQTSTGALALEGKVAHRVDCRP--V 116
Query: 124 NMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQT 183
E Y +L R + +M R +D + +P+ +N + + + K+
Sbjct: 117 GGEHYMKLKRLQVLDAMTPMRTTMALDRAVTNNYKPV--------ANHANNLEIERRKKE 168
Query: 184 EVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQG 243
+ KR R D ++++++F FE+ + +K LV+ T QP Q+LKE+L E+ YN + ++
Sbjct: 169 DGKRARADPEKVQEMLFSAFEKHQYYNIKDLVEITKQPIQYLKEVLKEIATYNLKAPHKN 228
Query: 244 TYELKPEYK 252
T+ELKPEY+
Sbjct: 229 TWELKPEYR 237
>gi|281210350|gb|EFA84517.1| TFIIF subunit [Polysphondylium pallidum PN500]
Length = 258
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/256 (28%), Positives = 123/256 (48%), Gaps = 24/256 (9%)
Query: 13 GNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTA 72
G ++T + WL+K P +A W + + K+ S+++ ++
Sbjct: 11 GEINTDNVETQAWLIKVPKHLADHWMTAGGGTE---IGKLFFK----SSNNLSLSINFKD 63
Query: 73 VSNDSLNRPKSYSLNM----FKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEY 128
N++ P S L + D P+ +FSE + ++ EG + + D++ + + Y
Sbjct: 64 KENNNGYVP-SEELQLVTTPLPDSNPIKIFSEDTENALSFEGSIGLRCDVR-MDLSSPAY 121
Query: 129 GRLCRERTNKSMIKNRQIQVID-ND----HGVHMRPMPGMVGLISSNSKDKKKAQPVKQT 183
L + RT K RQ + I+ ND H V+ P V + +K K K+Q
Sbjct: 122 RELMKSRTTSYNTKTRQSKTIEANDRSQLHRVYSNPAKIAVS-TTVYTKPKGKSQ----- 175
Query: 184 EVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQG 243
E KR R +L D++FK F + W LK LV TDQP +LK+ L ++C +KRG+++
Sbjct: 176 EDKRERMQEEDLIDLIFKAFGEKQYWLLKDLVAYTDQPQVWLKQTLEKICTLHKRGSHRN 235
Query: 244 TYELKPEYKKSVEDGG 259
+YE+KPEYK S + G
Sbjct: 236 SYEIKPEYKTSTQPGA 251
>gi|301758318|ref|XP_002915010.1| PREDICTED: general transcription factor IIF subunit 2-like
[Ailuropoda melanoleuca]
gi|345788533|ref|XP_851466.2| PREDICTED: general transcription factor IIF subunit 2 [Canis lupus
familiaris]
gi|410947437|ref|XP_003980453.1| PREDICTED: general transcription factor IIF subunit 2 [Felis catus]
Length = 249
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 130/250 (52%), Gaps = 22/250 (8%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ + +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 DLANIHDIGGKPASVSTPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y RL R + +S R Q +D + +P+ +N + + + K+
Sbjct: 121 S--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIEYERKKK 170
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQ 242
+ KR R D+ + D++F FE+ + LK LV T QP +LKEIL E+ V N +GT++
Sbjct: 171 EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGVQNVKGTHK 230
Query: 243 GTYELKPEYK 252
T+ELKPEY+
Sbjct: 231 NTWELKPEYR 240
>gi|45360629|ref|NP_988987.1| general transcription factor IIF, polypeptide 2, 30kDa [Xenopus
(Silurana) tropicalis]
gi|38174399|gb|AAH61312.1| general transcription factor 2F, polypeptide 2, 30kDa [Xenopus
(Silurana) tropicalis]
Length = 264
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 136/265 (51%), Gaps = 38/265 (14%)
Query: 12 KGNLDT--AKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM- 68
KG+LD AK + +WL+K P +A+ W A + V K+ + + +++ + FT+
Sbjct: 5 KGDLDLNGAKQNTGMWLVKLPKYLAQQW---AKATGRGEVGKLRIVKNQGKTE-VSFTLN 60
Query: 69 ETTAVSNDSLNRPKSYSLNMFKD--FV-------PMSVFSESNQG------------KVA 107
E A D +P S + ++ F+ ++VF+ES G K+A
Sbjct: 61 EELASIQDIGGKPASSLVTAPREHPFLLQSVGGQTLTVFTESLSGQSDDKSENRVIDKLA 120
Query: 108 MEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLI 167
+EG V H+ + +P E Y ++ R++ +S RQ Q I+ + RP+
Sbjct: 121 LEGIVVHRAECRPAAS--ENYMQMKRKQIEESSKPKRQSQQIEKAVTTNYRPV------- 171
Query: 168 SSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKE 227
SN + + + K+ + KR R D+ ++ D++F FE+ + +K LV T QP +LKE
Sbjct: 172 -SNHQYNIEYEKKKKDDGKRARADKHQVLDMLFSAFEKHQYYNIKDLVDITKQPVSYLKE 230
Query: 228 ILNELCVYNKRGTNQGTYELKPEYK 252
IL ++ +YN +GT++ T+ELKPEY+
Sbjct: 231 ILRDIGIYNMKGTHKNTWELKPEYR 255
>gi|344281782|ref|XP_003412656.1| PREDICTED: general transcription factor IIF subunit 2-like
[Loxodonta africana]
Length = 249
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 130/250 (52%), Gaps = 22/250 (8%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ + +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y RL R + +S R Q +D + +P+ +N + + + K+
Sbjct: 121 S--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIEYERKKK 170
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQ 242
+ KR R D+ + D++F FE+ + LK LV T QP +LKEIL E+ + N +GT++
Sbjct: 171 EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILREIGIQNVKGTHK 230
Query: 243 GTYELKPEYK 252
T+ELKPEY+
Sbjct: 231 NTWELKPEYR 240
>gi|340370336|ref|XP_003383702.1| PREDICTED: general transcription factor IIF subunit 2-like
[Amphimedon queenslandica]
Length = 256
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 124/247 (50%), Gaps = 25/247 (10%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQF-----TM 68
+L+T+ A R VWL+K P V++ W+ ++ Q + ++ ++ +P S ++QF +
Sbjct: 16 SLNTSNASRGVWLVKVPNYVSERWKK---AKKDQELGRMRITRNPNNSTTVQFFLAPELL 72
Query: 69 ETTAVSNDSLNRPKSYSLNMFKD-FVPMSVFSESNQG-KVAMEGKVEHKFDMKPHEKNME 126
E PK + +N+ + +SVF+ES G + +EGK+ + +++P + ++
Sbjct: 73 EVKMEDGTVTQLPKDHRVNLQETKHQSLSVFTESQSGGDLVIEGKISQRAEIQPVDSSI- 131
Query: 127 EYGRLCRERTNKSMIKNRQIQVIDNDH--GVHMRPMPGMVGLISSNSKDKKKAQPVKQTE 184
Y L K QIQ + H+ +P + +A K+ E
Sbjct: 132 -YMSL----------KKHQIQQAEKTKFTASHLNELPSH-SYKPVAYHPEHEAIERKKKE 179
Query: 185 VKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGT 244
K+ R D+ + D++F F+R + K LV T QPA +LKEIL E+C+YN + ++
Sbjct: 180 PKKARDDKNVVFDLLFSAFQRHQYYTFKDLVDITQQPATYLKEILKEVCIYNTKSPHKYM 239
Query: 245 YELKPEY 251
+ELKPEY
Sbjct: 240 WELKPEY 246
>gi|417397839|gb|JAA45953.1| Putative proteinral transcription factor iif polypeptide 2 30kda
[Desmodus rotundus]
Length = 249
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 129/250 (51%), Gaps = 22/250 (8%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ + +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y RL R + +S R Q +D + RP+ +N + + + K+
Sbjct: 121 S--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYRPV--------ANHQYNIEYERKKK 170
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQ 242
+ KR R D+ + D++F FE+ + LK LV T QP +LKEIL E+ + N +G ++
Sbjct: 171 EDGKRARADKQYVLDMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVKGIHK 230
Query: 243 GTYELKPEYK 252
T+ELKPEY+
Sbjct: 231 NTWELKPEYR 240
>gi|291392998|ref|XP_002713006.1| PREDICTED: general transcription factor IIF, polypeptide 2, 30kDa
[Oryctolagus cuniculus]
Length = 249
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 130/250 (52%), Gaps = 22/250 (8%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ + +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y RL R + +S R Q +D + +P+ +N + + + K+
Sbjct: 121 S--ENYMRLKRLQIEESSKPVRLSQQLDKIVTTNYKPV--------ANHQYNIEYERKKK 170
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQ 242
+ KR R D+ ++ D++F FE+ + LK LV T QP +LKEIL E+ + N +G ++
Sbjct: 171 EDGKRARADKQQVLDMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVKGIHK 230
Query: 243 GTYELKPEYK 252
T+ELKPEY+
Sbjct: 231 NTWELKPEYR 240
>gi|255087202|ref|XP_002505524.1| predicted protein [Micromonas sp. RCC299]
gi|226520794|gb|ACO66782.1| predicted protein [Micromonas sp. RCC299]
Length = 417
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 123/301 (40%), Gaps = 74/301 (24%)
Query: 13 GNLDTAKADRSVWLMKCPLVVAKSWQNQASS--------------------QDSQPVAKV 52
G LDT + + WL+K P V ++W+ + + D + + ++
Sbjct: 128 GCLDTQRGEHLAWLVKVPAFVTRAWRAASDALDEVSELDGGVGTEIDGGKVDDKELLGRM 187
Query: 53 ILSLDPLQSDSMQ----FTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQG---- 104
+++DP + T+E + + + PK Y + M D P+ VFS+ +
Sbjct: 188 RMTVDPFAPPEKRQRHFLTLEDNVSAANRI--PKEYDMVMTPDDQPIHVFSDVRENTAAA 245
Query: 105 -----------------------------KVAMEGKVEHKFDMKPHEKNMEEYGRLCRER 135
+ +EG V KFD++P E Y R
Sbjct: 246 AARAAARLAAERALAGRGSGENQLSLPHDEFVLEGAVSEKFDVRPASVTDEAYRATHLRR 305
Query: 136 TNKSMIKNRQIQVIDNDHGVHMRPMP---GMVGLISSNSKDKKKAQPVKQTEVKRTRRDR 192
++ K R + + P+P + + K+KA+ R ++
Sbjct: 306 IEEATKKTRVMGDVKGPQ--RTVPLPKARNITQRLDGKEDVKEKAE----------RLEK 353
Query: 193 GELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK 252
LED + LFERQ W+ KQLV ET QPA +LKE+L EL V N+RG N G Y LK EY+
Sbjct: 354 PLLEDRLMGLFERQSLWSFKQLVAETRQPAVWLKEVLTELAVLNRRGPNTGMYVLKEEYR 413
Query: 253 K 253
+
Sbjct: 414 R 414
>gi|395834851|ref|XP_003790402.1| PREDICTED: general transcription factor IIF subunit 2 [Otolemur
garnettii]
Length = 249
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 129/250 (51%), Gaps = 22/250 (8%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ + +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 DLANIHDIGGKPASVSTPREHPFVLQSVGGQTLTVFTESSTDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y RL R + +S R Q +D + +P+ +N + + + K+
Sbjct: 121 S--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIEYERKKK 170
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQ 242
+ KR R D+ + D++F FE+ + LK LV T QP +LKEIL E+ V N +G ++
Sbjct: 171 EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGVQNVKGIHK 230
Query: 243 GTYELKPEYK 252
T+ELKPEY+
Sbjct: 231 NTWELKPEYR 240
>gi|239790566|dbj|BAH71836.1| ACYPI008218 [Acyrthosiphon pisum]
Length = 257
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 126/257 (49%), Gaps = 31/257 (12%)
Query: 13 GNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSD-SMQFTMETT 71
G+LD +KA ++WL+K P VA W N S D + KV ++ + D S+ +
Sbjct: 4 GSLDVSKAGNALWLVKVPKYVADKWDNAPGSLDVGKI-KVTNTIPGKRPDISLHLSEAVL 62
Query: 72 AVSNDSLNRP--KSYSLNMFK--------------DFVPMSVFSESNQGKVAMEGKVEHK 115
+ + N P KS+ L++ + P +V E++ ++A+ GK+ K
Sbjct: 63 CLDGEKSNEPIPKSFKLDVSHFTSQTMVALSEHRMSYNPDAVVQETD--RLAILGKISQK 120
Query: 116 FDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKK 175
+ +P + Y L ++ K+ I RQ+Q +D + +P+ I N K
Sbjct: 121 LECRPIGDQV--YMDLKKQAIRKAHIPTRQVQKLDKV-VQNFKPISDHKHNIEYNEK--- 174
Query: 176 KAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVY 235
K++E K+ R D+ + ++FK FE+ + +K LV T QP +LKEIL E+C Y
Sbjct: 175 -----KKSEGKKARDDKDAVMAMLFKAFEKHQYYNIKDLVTLTKQPVVYLKEILKEVCNY 229
Query: 236 NKRGTNQGTYELKPEYK 252
N + ++ +ELKPEY+
Sbjct: 230 NLKHPHKNMWELKPEYR 246
>gi|62901918|gb|AAY18910.1| RAP30 [synthetic construct]
Length = 273
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 130/256 (50%), Gaps = 22/256 (8%)
Query: 5 QSNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSM 64
Q + G+ +L AK + VWL+K P +++ W A + V K+ ++ +++ +
Sbjct: 23 QGSAERGELDLTGAKQNTGVWLVKVPKYLSQQW---AKASGRGEVGKLRIAKTQGRTE-V 78
Query: 65 QFTM-ETTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKF 116
FT+ E A +D +P S S FV ++VF+ES+ K+++EG V +
Sbjct: 79 SFTLNEDLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRA 138
Query: 117 DMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKK 176
+ +P E Y RL R + +S R Q +D + +P+ +N + +
Sbjct: 139 ECRPAAS--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIE 188
Query: 177 AQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYN 236
+ K+ + KR R D+ + D++F FE+ + LK LV T QP +LKEIL E+ V N
Sbjct: 189 YERKKKEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQN 248
Query: 237 KRGTNQGTYELKPEYK 252
+G ++ T+ELKPEY+
Sbjct: 249 VKGIHKNTWELKPEYR 264
>gi|296203835|ref|XP_002749072.1| PREDICTED: general transcription factor IIF subunit 2 [Callithrix
jacchus]
gi|403286252|ref|XP_003934413.1| PREDICTED: general transcription factor IIF subunit 2 [Saimiri
boliviensis boliviensis]
Length = 249
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 129/250 (51%), Gaps = 22/250 (8%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ + +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y RL R + +S R Q +D + +P+ +N + + + K+
Sbjct: 121 S--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIEYERKKK 170
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQ 242
+ KR R D+ + D++F FE+ + LK LV T QP +LKEIL E+ V N +G ++
Sbjct: 171 EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHK 230
Query: 243 GTYELKPEYK 252
T+ELKPEY+
Sbjct: 231 NTWELKPEYR 240
>gi|354476267|ref|XP_003500346.1| PREDICTED: general transcription factor IIF subunit 2-like
[Cricetulus griseus]
gi|344240972|gb|EGV97075.1| General transcription factor IIF subunit 2 [Cricetulus griseus]
Length = 249
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 129/250 (51%), Gaps = 22/250 (8%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ + +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y RL R + +S R Q +D + +P+ +N + + + K+
Sbjct: 121 S--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIEYERKKK 170
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQ 242
+ KR R D+ + D++F FE+ + LK LV T QP +LKEIL E+ + N +G ++
Sbjct: 171 EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVKGIHK 230
Query: 243 GTYELKPEYK 252
T+ELKPEY+
Sbjct: 231 NTWELKPEYR 240
>gi|4758488|ref|NP_004119.1| general transcription factor IIF subunit 2 [Homo sapiens]
gi|114651459|ref|XP_001154142.1| PREDICTED: uncharacterized protein LOC741868 [Pan troglodytes]
gi|297693990|ref|XP_002824282.1| PREDICTED: general transcription factor IIF subunit 2 [Pongo
abelii]
gi|397472363|ref|XP_003807716.1| PREDICTED: general transcription factor IIF subunit 2 [Pan
paniscus]
gi|426375361|ref|XP_004054510.1| PREDICTED: general transcription factor IIF subunit 2 [Gorilla
gorilla gorilla]
gi|464519|sp|P13984.2|T2FB_HUMAN RecName: Full=General transcription factor IIF subunit 2; AltName:
Full=ATP-dependent helicase GTF2F2; AltName:
Full=General transcription factor IIF 30 kDa subunit;
AltName: Full=Transcription initiation factor IIF
subunit beta; Short=TFIIF-beta; AltName:
Full=Transcription initiation factor RAP30
gi|35865|emb|CAA34775.1| 30kb subunit of RAB30 /74 [Homo sapiens]
gi|35867|emb|CAA42419.1| RAP30 [Homo sapiens]
gi|12804689|gb|AAH01771.1| General transcription factor IIF, polypeptide 2, 30kDa [Homo
sapiens]
gi|54695920|gb|AAV38332.1| general transcription factor IIF, polypeptide 2, 30kDa [Homo
sapiens]
gi|61356697|gb|AAX41274.1| general transcription factor IIF polypeptide 2 [synthetic
construct]
gi|119629133|gb|EAX08728.1| general transcription factor IIF, polypeptide 2, 30kDa, isoform
CRA_c [Homo sapiens]
gi|119629134|gb|EAX08729.1| general transcription factor IIF, polypeptide 2, 30kDa, isoform
CRA_c [Homo sapiens]
gi|158256522|dbj|BAF84234.1| unnamed protein product [Homo sapiens]
gi|190689903|gb|ACE86726.1| general transcription factor IIF, polypeptide 2, 30kDa protein
[synthetic construct]
gi|190691275|gb|ACE87412.1| general transcription factor IIF, polypeptide 2, 30kDa protein
[synthetic construct]
gi|261859240|dbj|BAI46142.1| general transcription factor IIF, polypeptide 2, 30kDa [synthetic
construct]
gi|410217096|gb|JAA05767.1| general transcription factor IIF, polypeptide 2, 30kDa [Pan
troglodytes]
gi|410248632|gb|JAA12283.1| general transcription factor IIF, polypeptide 2, 30kDa [Pan
troglodytes]
gi|410288620|gb|JAA22910.1| general transcription factor IIF, polypeptide 2, 30kDa [Pan
troglodytes]
gi|410336085|gb|JAA36989.1| general transcription factor IIF, polypeptide 2, 30kDa [Pan
troglodytes]
Length = 249
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 128/250 (51%), Gaps = 22/250 (8%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKASGRGEVGKLRIAKTQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y RL R + +S R Q +D + +P+ +N + + + K+
Sbjct: 121 S--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIEYERKKK 170
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQ 242
+ KR R D+ + D++F FE+ + LK LV T QP +LKEIL E+ V N +G ++
Sbjct: 171 EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHK 230
Query: 243 GTYELKPEYK 252
T+ELKPEY+
Sbjct: 231 NTWELKPEYR 240
>gi|193620369|ref|XP_001951556.1| PREDICTED: general transcription factor IIF subunit 2-like
[Acyrthosiphon pisum]
Length = 257
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 126/257 (49%), Gaps = 31/257 (12%)
Query: 13 GNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSD-SMQFTMETT 71
G+LD +KA ++WL+K P VA W N S D + KV ++ + D S+ +
Sbjct: 4 GSLDVSKAGNALWLVKVPKYVADKWDNAPGSLDVGKI-KVTNTIPGKRPDISLHLSEAVL 62
Query: 72 AVSNDSLNRP--KSYSLNMFK--------------DFVPMSVFSESNQGKVAMEGKVEHK 115
+ + N P KS+ L++ + P +V E++ ++A+ GK+ K
Sbjct: 63 CLDGEKNNEPIPKSFKLDVSHFTSQTMVALSEHRMSYNPDAVVQETD--RLAILGKISQK 120
Query: 116 FDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKK 175
+ +P + Y L ++ K+ I RQ+Q +D + +P+ I N K
Sbjct: 121 LECRPIGDQV--YMDLKKQAIRKAHIPTRQVQKLDKV-VQNFKPISDHKHNIEYNEK--- 174
Query: 176 KAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVY 235
K++E K+ R D+ + ++FK FE+ + +K LV T QP +LKEIL E+C Y
Sbjct: 175 -----KKSEGKKARDDKDAVMAMLFKAFEKHQYYNIKDLVTLTKQPVVYLKEILKEVCNY 229
Query: 236 NKRGTNQGTYELKPEYK 252
N + ++ +ELKPEY+
Sbjct: 230 NLKHPHKNMWELKPEYR 246
>gi|363729437|ref|XP_003640649.1| PREDICTED: general transcription factor IIF subunit 2 isoform 1
[Gallus gallus]
Length = 249
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 137/257 (53%), Gaps = 25/257 (9%)
Query: 12 KGNLDT--AKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM- 68
KG LD K + +WL+K P +++ W ++AS + V K+ ++ + +++ + FT+
Sbjct: 4 KGELDLTGVKQNTGMWLVKVPKYLSQQW-SKASGRGE--VGKLRIAKNQGRTE-VSFTLN 59
Query: 69 ETTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPH 121
E A +D +P + S F+ ++VF+ES+ K+++EG V + + +P
Sbjct: 60 EELASISDIGGKPAAVSAPREHPFLLQNVGGQTLTVFTESSTDKLSLEGIVVQRAECRPA 119
Query: 122 EKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVK 181
E Y +L R + +S R Q +D + +P+ +N + + + K
Sbjct: 120 AS--ENYMKLKRFQIEESSKPVRLSQQLDKAVTTNYKPV--------ANHQYNIEYEKKK 169
Query: 182 QTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 241
+ + KR R D+ ++ D++F FE+ + +K LV T QP +LKEIL E+ +YN +GT+
Sbjct: 170 KEDGKRARADKQQVLDMLFSAFEKHQYYNIKDLVDITKQPVIYLKEILREIGIYNVKGTH 229
Query: 242 QGTYELKPEYKK-SVED 257
+ T+ELKPEY+ VED
Sbjct: 230 KNTWELKPEYRHYQVED 246
>gi|343791023|ref|NP_001230557.1| general transcription factor IIF, polypeptide 2, 30kDa [Sus scrofa]
Length = 249
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 129/250 (51%), Gaps = 22/250 (8%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ + +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 ELANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y RL R + +S R Q +D + +P+ +N + + + K+
Sbjct: 121 S--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIEYERKKK 170
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQ 242
+ KR R D+ + D++F FE+ + LK LV T QP +LKEIL E+ + N +G ++
Sbjct: 171 EDGKRARADKQYVLDMLFSAFEKHQYYNLKDLVDITKQPVSYLKEILKEIGIQNVKGIHK 230
Query: 243 GTYELKPEYK 252
T+ELKPEY+
Sbjct: 231 NTWELKPEYR 240
>gi|149730248|ref|XP_001491541.1| PREDICTED: general transcription factor IIF subunit 2-like [Equus
caballus]
Length = 249
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 129/250 (51%), Gaps = 22/250 (8%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ + +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y RL R + +S R Q +D + +P+ +N + + + K+
Sbjct: 121 S--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIEYERKKK 170
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQ 242
+ KR R D+ + D++F FE+ + LK LV T QP +LKEIL E+ + N +G ++
Sbjct: 171 EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVLYLKEILKEIGIQNVKGIHK 230
Query: 243 GTYELKPEYK 252
T+ELKPEY+
Sbjct: 231 NTWELKPEYR 240
>gi|84000109|ref|NP_001033153.1| general transcription factor IIF subunit 2 [Bos taurus]
gi|426236297|ref|XP_004012106.1| PREDICTED: general transcription factor IIF subunit 2 [Ovis aries]
gi|118573901|sp|Q2T9L9.1|T2FB_BOVIN RecName: Full=General transcription factor IIF subunit 2; AltName:
Full=ATP-dependent helicase GTF2F2; AltName:
Full=Transcription initiation factor IIF subunit beta;
Short=TFIIF-beta
gi|83405774|gb|AAI11361.1| General transcription factor IIF, polypeptide 2, 30kDa [Bos taurus]
gi|296481803|tpg|DAA23918.1| TPA: general transcription factor IIF subunit 2 [Bos taurus]
Length = 249
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 129/250 (51%), Gaps = 22/250 (8%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ + +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y RL R + +S R Q +D + +P+ +N + + + K+
Sbjct: 121 N--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIEYERKKK 170
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQ 242
+ KR R D+ + D++F FE+ + LK LV T QP +LK+IL E+ V N +G ++
Sbjct: 171 EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVSYLKDILKEIGVQNVKGIHK 230
Query: 243 GTYELKPEYK 252
T+ELKPEY+
Sbjct: 231 NTWELKPEYR 240
>gi|39930425|ref|NP_081092.1| general transcription factor IIF subunit 2 [Mus musculus]
gi|62901035|sp|Q8R0A0.1|T2FB_MOUSE RecName: Full=General transcription factor IIF subunit 2; AltName:
Full=ATP-dependent helicase GTF2F2; AltName:
Full=Transcription initiation factor IIF subunit beta;
Short=TFIIF-beta
gi|20072603|gb|AAH27173.1| General transcription factor IIF, polypeptide 2 [Mus musculus]
gi|74201290|dbj|BAE26104.1| unnamed protein product [Mus musculus]
gi|148703868|gb|EDL35815.1| general transcription factor IIF, polypeptide 2, isoform CRA_c [Mus
musculus]
Length = 249
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 129/250 (51%), Gaps = 22/250 (8%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ + +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKASGRGEVGKLRIAKNQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y +L R + +S R Q +D + +P+ +N + + + K+
Sbjct: 121 S--ENYMKLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIEYERKKK 170
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQ 242
+ KR R D+ + D++F FE+ + LK LV T QP +LKEIL E+ + N +G ++
Sbjct: 171 EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVKGIHK 230
Query: 243 GTYELKPEYK 252
T+ELKPEY+
Sbjct: 231 NTWELKPEYR 240
>gi|348583519|ref|XP_003477520.1| PREDICTED: general transcription factor IIF subunit 2-like [Cavia
porcellus]
Length = 249
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 128/250 (51%), Gaps = 22/250 (8%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W + V K+ ++ + +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQWTKAPGRGE---VGKLRIAKNQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y RL R + +S R Q +D + +P+ +N + + + K+
Sbjct: 121 S--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIEYERKKK 170
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQ 242
+ KR R D+ + D++F FE+ + LK LV T QP +LKEIL E+ + N +G ++
Sbjct: 171 EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVKGIHK 230
Query: 243 GTYELKPEYK 252
T+ELKPEY+
Sbjct: 231 NTWELKPEYR 240
>gi|450771|gb|AAA81888.1| dTFIIF30 [Drosophila melanogaster]
Length = 276
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 126/256 (49%), Gaps = 31/256 (12%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQD----------------SQPVAKVILSLD 57
+LD + A R VWL+K P +A+ W+ ++ D S + +L+LD
Sbjct: 15 DLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLALD 74
Query: 58 PLQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDF-VPMSVFSESNQGKVAMEGKVEHKF 116
P + + ++ + V+ +L +++ M + +P S+ K+ MEG++ K
Sbjct: 75 PEEKIPTEHILDVSQVTKQTLGYSRTWHRPMARRTRLPRR---HSDNEKLYMEGRIVQKL 131
Query: 117 DMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKK 176
+ +P N Y +L E K+ R++Q ID + +P+ I +++KK
Sbjct: 132 ECRPIADNC--YMKLKLESIRKASEPQRRVQPIDKI-VQNFKPVKDHAHNIEY--RERKK 186
Query: 177 AQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYN 236
A E K+ R D+ + D++F FE+ + +K LV+ T+QP +LKEIL ++C YN
Sbjct: 187 A------EGKKARDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDVCDYN 240
Query: 237 KRGTNQGTYELKPEYK 252
+ ++ +ELK EY+
Sbjct: 241 MKNPHKNMWELKKEYR 256
>gi|195499852|ref|XP_002097123.1| GE24669 [Drosophila yakuba]
gi|194183224|gb|EDW96835.1| GE24669 [Drosophila yakuba]
Length = 277
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 124/262 (47%), Gaps = 42/262 (16%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQD----------------SQPVAKVILSLD 57
+LD + A R VWL+K P +A+ W+ ++ D S + +L+LD
Sbjct: 15 DLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLALD 74
Query: 58 PLQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVP-------MSVFSESNQGKVAMEG 110
P + + ++ + V+ +L +F P S S+ + K+ MEG
Sbjct: 75 PEEKIPTEHVLDVSQVTKQTLG--------VFSHMAPSDGKENSTSSASQPDNEKLYMEG 126
Query: 111 KVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSN 170
++ K + +P N Y +L E K+ R++Q ID + +P+ I
Sbjct: 127 RIVQKLECRPIADNC--YMKLKLESIRKASEPQRRVQPIDKIVQ-NFKPVKDHAHNIEY- 182
Query: 171 SKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILN 230
+++KKA E K+ R D+ + D++F FE+ + +K LV+ T+QP +LKEIL
Sbjct: 183 -RERKKA------EGKKARDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILK 235
Query: 231 ELCVYNKRGTNQGTYELKPEYK 252
++C YN + ++ +ELK EY+
Sbjct: 236 DVCDYNMKNPHKNMWELKKEYR 257
>gi|31542922|ref|NP_112304.2| general transcription factor IIF subunit 2 [Rattus norvegicus]
gi|220891|dbj|BAA01516.1| RAP30 [Rattus norvegicus]
gi|60552080|gb|AAH91112.1| General transcription factor IIF, polypeptide 2 [Rattus norvegicus]
gi|149049981|gb|EDM02305.1| general transcription factor IIF, polypeptide 2, isoform CRA_b
[Rattus norvegicus]
Length = 249
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 129/250 (51%), Gaps = 22/250 (8%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ + +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y +L R + +S R Q +D + +P+ +N + + + K+
Sbjct: 121 S--ENYMKLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIEYERKKK 170
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQ 242
+ KR R D+ + D++F FE+ + LK LV T QP +LKEIL E+ + N +G ++
Sbjct: 171 EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVKGIHK 230
Query: 243 GTYELKPEYK 252
T+ELKPEY+
Sbjct: 231 NTWELKPEYR 240
>gi|348515663|ref|XP_003445359.1| PREDICTED: general transcription factor IIF subunit 2-like isoform
1 [Oreochromis niloticus]
Length = 255
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 125/247 (50%), Gaps = 22/247 (8%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM--ETT 71
+L K + VWL+K P +++ W A D V K+ + +++ + F++ E T
Sbjct: 8 DLSGVKQSKGVWLVKVPKYLSQQWDKAAEKGD---VGKITIGKKQGKTE-VCFSLIDELT 63
Query: 72 AV----SND-SLNRPKSYSLNMFK-DFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNM 125
A+ ND SL PK + M M+VFS S+ ++++EG V H+ + +P
Sbjct: 64 ALDAVGENDASLQVPKDHPFTMHTVGGQTMAVFSHSDTDEISLEGMVVHRAECRP--VVT 121
Query: 126 EEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEV 185
+ Y +L + + +S+ R Q ++ +P+ +N + + K+TE
Sbjct: 122 DSYMKLKKLQIKESVKPQRLSQQLERAVTTIFKPV--------ANHDFNVEYEKKKKTEG 173
Query: 186 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTY 245
K R +R + D++F FE+ + +K LV T QP +LKEI+ E+ YN +G ++ T+
Sbjct: 174 KMVRAERQLVLDMLFSAFEKHQYYNIKALVDITKQPVTYLKEIMREIGTYNSKGAHKSTW 233
Query: 246 ELKPEYK 252
ELKPEY+
Sbjct: 234 ELKPEYR 240
>gi|388454665|ref|NP_001253640.1| general transcription factor IIF subunit 2 [Macaca mulatta]
gi|402901916|ref|XP_003913880.1| PREDICTED: general transcription factor IIF subunit 2 [Papio
anubis]
gi|380786557|gb|AFE65154.1| general transcription factor IIF subunit 2 [Macaca mulatta]
gi|383413475|gb|AFH29951.1| general transcription factor IIF subunit 2 [Macaca mulatta]
gi|384946658|gb|AFI36934.1| general transcription factor IIF subunit 2 [Macaca mulatta]
Length = 249
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 129/250 (51%), Gaps = 22/250 (8%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ + +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y RL R + +S R Q ++ + +P+ +N + + + K+
Sbjct: 121 S--ENYMRLKRLQIEESSKPVRLSQQLEKVVTTNYKPV--------ANHQYNIEYERKKK 170
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQ 242
+ KR R D+ + D++F FE+ + LK LV T QP +LKEIL E+ V N +G ++
Sbjct: 171 EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHK 230
Query: 243 GTYELKPEYK 252
T+ELKPEY+
Sbjct: 231 NTWELKPEYR 240
>gi|194902220|ref|XP_001980647.1| GG17267 [Drosophila erecta]
gi|190652350|gb|EDV49605.1| GG17267 [Drosophila erecta]
Length = 277
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 124/262 (47%), Gaps = 42/262 (16%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQD----------------SQPVAKVILSLD 57
+LD + A R VWL+K P +A+ W+ ++ D S + +L+LD
Sbjct: 15 DLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLALD 74
Query: 58 PLQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVP-------MSVFSESNQGKVAMEG 110
P + + ++ + V+ +L +F P S ++ + K+ MEG
Sbjct: 75 PEEKIPTEHVLDVSQVTKQTLG--------VFSHMAPSDGKENSTSSAAQPDNEKLYMEG 126
Query: 111 KVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSN 170
++ K + +P N Y +L E K+ R++Q ID + +P+ I
Sbjct: 127 RIVQKLECRPIADNC--YMKLKLESIRKASEPQRRVQPIDKIVQ-NFKPVKDHAHNIEY- 182
Query: 171 SKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILN 230
+++KKA E K+ R D+ + D++F FE+ + +K LV+ T+QP +LKEIL
Sbjct: 183 -RERKKA------EGKKARDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILK 235
Query: 231 ELCVYNKRGTNQGTYELKPEYK 252
++C YN + ++ +ELK EY+
Sbjct: 236 DVCDYNMKNPHKNMWELKKEYR 257
>gi|332376103|gb|AEE63192.1| unknown [Dendroctonus ponderosae]
Length = 265
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 127/259 (49%), Gaps = 40/259 (15%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAV 73
+LD + A+R VWL+K P VA W+ + + V K+ ++ Q + T+ + A+
Sbjct: 10 DLDLSNANRGVWLVKVPKYVANRWEKAPNEME---VGKLKITKQQGQKPQVSLTL-SPAI 65
Query: 74 SNDSLNRPKSYS----------------LNMFKDFVPM---SVFSESNQGKVAMEGKVEH 114
N LN P S L +F +P SV E+ K+ MEGK+
Sbjct: 66 LN--LNEPGEESIPKDHRLDVSTVTQQTLGVFSHVIPEKSDSVVPETE--KLHMEGKIVQ 121
Query: 115 KFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVH-MRPMPGMVGLISSNSKD 173
K + +P+ Y +L E K+ + R+++ +D VH +P+ S+ K+
Sbjct: 122 KLECRPYADTC--YMKLKLESIRKASLPTRKVKQLDR--VVHSYKPV--------SDHKN 169
Query: 174 KKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELC 233
+ K+ E K+ R D+ + +++F FE+ + +K LV+ T QP +LKEIL E+C
Sbjct: 170 NIEYMERKKAEGKKARDDKDSVLEMLFSAFEKHQYYNIKDLVKITRQPITYLKEILKEVC 229
Query: 234 VYNKRGTNQGTYELKPEYK 252
YN + ++ +ELKPEY+
Sbjct: 230 NYNLKNPHKNMWELKPEYR 248
>gi|226372114|gb|ACO51682.1| Transcription initiation factor IIF subunit beta [Rana catesbeiana]
Length = 264
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 133/264 (50%), Gaps = 36/264 (13%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L+ AK + VWL+K P +A+ W A + V K+ ++ + +++ + FT+ E
Sbjct: 6 GELDLNGAKQNTGVWLVKLPKYLAQQW---AKATGKGEVGKLRIAKNQGKTE-VSFTLNE 61
Query: 70 TTAVSNDSLNRPKSYSLNMFKDF---------VPMSVFSESNQG------------KVAM 108
A D +P + ++ ++VF+ES G K+A+
Sbjct: 62 ELASIQDIGGKPAPSFVTAPREHPFQLQSVGGQTLTVFTESLTGQPEEKSENRTTDKLAI 121
Query: 109 EGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLIS 168
EG V + + + E Y ++ R + +S RQ Q I+ ++ +P+
Sbjct: 122 EGIVVQRAECRAAAS--EHYMQMKRRQIEESSKPKRQSQQIERAVTINYKPV-------- 171
Query: 169 SNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEI 228
SN ++ + + K+ E KR R D+ ++ D++F FE+ + LK LV T QP +LKEI
Sbjct: 172 SNHQNNIEYERKKKDEGKRARADKQQVLDMLFSAFEKHQYYNLKDLVDITKQPVLYLKEI 231
Query: 229 LNELCVYNKRGTNQGTYELKPEYK 252
L ++ VYN +GT++ T+EL+PEY+
Sbjct: 232 LKDIGVYNVKGTHKNTWELRPEYR 255
>gi|400922|sp|Q01750.1|T2FB_RAT RecName: Full=General transcription factor IIF subunit 2; AltName:
Full=ATP-dependent helicase GTF2F2; AltName:
Full=Transcription initiation factor IIF subunit beta;
Short=TFIIF-beta; AltName: Full=Transcription initiation
factor RAP30
gi|206551|gb|AAA42005.1| helicase [Rattus norvegicus]
Length = 249
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 128/250 (51%), Gaps = 22/250 (8%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ + +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y +L R + +S R Q D + +P+ +N + + + K+
Sbjct: 121 S--ENYMKLKRLQIEESSKPVRLSQQADKVVTTNYKPV--------ANHQYNIEYERKKK 170
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQ 242
+ KR R D+ + D++F FE+ + LK LV T QP +LKEIL E+ + N +G ++
Sbjct: 171 EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVKGIHK 230
Query: 243 GTYELKPEYK 252
T+ELKPEY+
Sbjct: 231 NTWELKPEYR 240
>gi|195330041|ref|XP_002031717.1| GM26151 [Drosophila sechellia]
gi|194120660|gb|EDW42703.1| GM26151 [Drosophila sechellia]
Length = 277
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 126/257 (49%), Gaps = 32/257 (12%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAV 73
+LD + A R VWL+K P +A+ W+ ++ D V K+ ++ P Q + ++ T +
Sbjct: 15 DLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMD---VGKLRINKTPGQKAQVSLSLTTAVL 71
Query: 74 SND-----------SLNRPKSYSLNMFKDFVP-------MSVFSESNQGKVAMEGKVEHK 115
+ D +++ +L +F P + ++ + K+ MEG++ K
Sbjct: 72 ALDPDEKIPTEHILDVSQVTKQTLGVFSHMAPSDGKENSTTSTAQPDNEKLYMEGRIVQK 131
Query: 116 FDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKK 175
+ +P N Y +L E K+ R++Q ID + +P+ I +++K
Sbjct: 132 LECRPIADNC--YMKLKLESIRKASEPQRRVQPIDKI-VQNFKPVKDHAHNIEY--RERK 186
Query: 176 KAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVY 235
KA E K+ R D+ + D++F FE+ + +K LV+ T+QP +LKEIL ++C Y
Sbjct: 187 KA------EGKKARDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDVCDY 240
Query: 236 NKRGTNQGTYELKPEYK 252
N + ++ +ELK EY+
Sbjct: 241 NMKNPHKNMWELKKEYR 257
>gi|357622901|gb|EHJ74261.1| putative Transcription initiation factor IIF subunit beta [Danaus
plexippus]
Length = 271
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 120/259 (46%), Gaps = 42/259 (16%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAVS 74
LD + R VWL+K P +A W + + V K+ +S P Q +Q ++ +
Sbjct: 14 LDLSNTGRGVWLVKVPKYIANKWDKASGDIE---VGKLKISRVPGQRAQVQLSLSEAVLC 70
Query: 75 NDSLNRP----------------KSYSLNMFKDFVPM---SVFSESNQGKVAMEGKVEHK 115
LN P SL +F VP +V ES K+ MEG++ K
Sbjct: 71 ---LNEPGEQALPKEHRLDVSNVTRQSLGVFSHAVPSNTDTVVPESE--KLYMEGRIVQK 125
Query: 116 FDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGV--HMRPMPGMVGLISSNSKD 173
+ KP+ Y +L E K+++ RQ+Q + G+ + +P+ S+ K
Sbjct: 126 LECKPYADPT--YYKLKSESIRKALMPQRQVQQLK---GIVQNFKPV--------SDHKH 172
Query: 174 KKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELC 233
Q K+ E K+ R D+ + +++F FE+ + +K L T QP +LKEIL E+C
Sbjct: 173 NIDYQVKKKAEGKKARDDKESVLNVLFAAFEKHQYYNIKDLQNITRQPIVYLKEILKEVC 232
Query: 234 VYNKRGTNQGTYELKPEYK 252
YN + ++ +ELKPEY+
Sbjct: 233 NYNLKNPHKNMWELKPEYR 251
>gi|449662180|ref|XP_002160344.2| PREDICTED: general transcription factor IIF subunit 2-like [Hydra
magnipapillata]
Length = 265
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 119/264 (45%), Gaps = 45/264 (17%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAVS 74
+D +A +SVWL+K P +A W D+ + + M F + V
Sbjct: 18 VDCTRAGQSVWLVKVPKYIADIW----GKADASGIVGSLKIPKHTAPKHMLFELSDHLVK 73
Query: 75 NDS--LNRPKSYSLNMFKDFVPMSVFSESN----------QGKVAMEGKVEHKFDMKPHE 122
+ + + P + M + VFSE++ + K+A EGK+ + D +P E
Sbjct: 74 SQAQGIEIPSKHKFEMSDIWQTFGVFSETSCDDEDANEQAREKIAFEGKIIKRADCRPIE 133
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVID---------NDHGVHMRPMPGMVGLISSNSKD 173
Y ++ R+ K+ RQ++ I NDH ++M P+
Sbjct: 134 D--PNYMQMKRKAIEKACRPVRQVKQITGLVTTFKPVNDHQINMEPI------------- 178
Query: 174 KKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELC 233
KK+ + E KR R +R E+ +++F FE+ + LK LV T QP LK IL ++C
Sbjct: 179 KKRKE-----EGKRVRAERDEVLEVLFSAFEKHQFYTLKDLVGITQQPVVHLKAILRDVC 233
Query: 234 VYNKRGTNQGTYELKPEYKKSVED 257
YN + ++ TYELKPEY+ +D
Sbjct: 234 NYNLKNPHKNTYELKPEYRHYKKD 257
>gi|24645751|ref|NP_524305.2| transcription factor TFIIFbeta [Drosophila melanogaster]
gi|1729817|sp|P41900.2|T2FB_DROME RecName: Full=General transcription factor IIF subunit 2; AltName:
Full=ATP-dependent helicase TfIIF-beta; AltName:
Full=Transcription initiation factor IIF subunit beta;
Short=TFIIF-beta
gi|806871|gb|AAA86888.1| initiation factor TFIIF small subunit [Drosophila melanogaster]
gi|7299356|gb|AAF54548.1| transcription factor TFIIFbeta [Drosophila melanogaster]
gi|17946191|gb|AAL49136.1| RE56801p [Drosophila melanogaster]
gi|220942436|gb|ACL83761.1| TfIIFbeta-PA [synthetic construct]
gi|220952660|gb|ACL88873.1| TfIIFbeta-PA [synthetic construct]
Length = 277
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 124/255 (48%), Gaps = 28/255 (10%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQD----------------SQPVAKVILSLD 57
+LD + A R VWL+K P +A+ W+ ++ D S + +L+LD
Sbjct: 15 DLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLALD 74
Query: 58 PLQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFD 117
P + + ++ + V+ +L + + K+ S N+ K+ MEG++ K +
Sbjct: 75 PEEKIPTEHILDVSQVTKQTLGVFSHMAPSDGKENSTTSAAQPDNE-KLYMEGRIVQKLE 133
Query: 118 MKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKA 177
+P N Y +L E K+ R++Q ID + +P+ I +++KKA
Sbjct: 134 CRPIADNC--YMKLKLESIRKASEPQRRVQPIDKIVQ-NFKPVKDHAHNIEY--RERKKA 188
Query: 178 QPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNK 237
E K+ R D+ + D++F FE+ + +K LV+ T+QP +LKEIL ++C YN
Sbjct: 189 ------EGKKARDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDVCDYNM 242
Query: 238 RGTNQGTYELKPEYK 252
+ ++ +ELK EY+
Sbjct: 243 KNPHKNMWELKKEYR 257
>gi|195571933|ref|XP_002103955.1| GD20705 [Drosophila simulans]
gi|194199882|gb|EDX13458.1| GD20705 [Drosophila simulans]
Length = 277
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 124/255 (48%), Gaps = 28/255 (10%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQD----------------SQPVAKVILSLD 57
+LD + A R VWL+K P +A+ W+ ++ D S + +L+LD
Sbjct: 15 DLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLALD 74
Query: 58 PLQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFD 117
P + + ++ + V+ +L + + K+ S N+ K+ MEG++ K +
Sbjct: 75 PDEKIPTEHILDVSQVTKQTLGVFSHMAPSDGKENSTTSTAQPDNE-KLYMEGRIVQKLE 133
Query: 118 MKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKA 177
+P N Y +L E K+ R++Q ID + +P+ I +++KKA
Sbjct: 134 CRPIADNC--YMKLKLESIRKASEPQRRVQPIDKIVQ-NFKPVKDHAHNIEY--RERKKA 188
Query: 178 QPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNK 237
E K+ R D+ + D++F FE+ + +K LV+ T+QP +LKEIL ++C YN
Sbjct: 189 ------EGKKARDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDVCDYNM 242
Query: 238 RGTNQGTYELKPEYK 252
+ ++ +ELK EY+
Sbjct: 243 KNPHKNMWELKKEYR 257
>gi|170065599|ref|XP_001868006.1| transcription initiation factor IIF subunit beta [Culex
quinquefasciatus]
gi|167862525|gb|EDS25908.1| transcription initiation factor IIF subunit beta [Culex
quinquefasciatus]
Length = 280
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 124/267 (46%), Gaps = 39/267 (14%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQAS----------------SQDSQPVAKVILSLDP 58
LD + A R VWL+K P +A W+ +Q S ++ ++++DP
Sbjct: 19 LDLSNAGRGVWLVKVPKYIANKWEKAPGNIEVGKLKISKQVGQKAQVSLTLSDAVINIDP 78
Query: 59 LQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESN----QGKVAMEGKVEH 114
+ ++ + V+ +L +F VP S ++ K+ MEG++
Sbjct: 79 AEEIPRDHRLDVSVVTKQTLG--------VFAHSVPASGAGSADPTPESEKLFMEGRIVQ 130
Query: 115 KFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDK 174
K + +P+ N Y ++ E K+ RQ++ ++ +P+ S+ K
Sbjct: 131 KLECRPYADNC--YMKMKLESIRKASQPARQLKSLEKIVQT-FKPV--------SDHKHN 179
Query: 175 KKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCV 234
+ + K+ E K++R D+ + D++F FE+ + +K LV+ T QP +LKEIL E+C
Sbjct: 180 IEEKERKKAEGKKSRDDKNAVLDMLFNAFEKHQYYNIKDLVKITRQPISYLKEILKEVCD 239
Query: 235 YNKRGTNQGTYELKPEYKKSVEDGGAD 261
YN + ++ +ELK EY+ ED D
Sbjct: 240 YNMKNPHKNMWELKKEYRHYKEDDKKD 266
>gi|242005669|ref|XP_002423685.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212506861|gb|EEB10947.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 229
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 117/253 (46%), Gaps = 57/253 (22%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAVS 74
LDT +R VWL+K P VA W+ + + + V K+ + P Q ++ ++ + AV
Sbjct: 9 LDTTNVERGVWLVKVPKYVATKWEKASGNIE---VGKLKICKQPGQKMQVELSL-SEAVL 64
Query: 75 N----DSLNRPKSYSLNMFK-DFVPMSVFSESNQG----------KVAMEGKVEHKFDMK 119
N N PK + L++ + + VFS + K+AMEG++ K + +
Sbjct: 65 NLKEPGEENIPKDHRLDVLPVKHLTLGVFSHTAPSNLEGVIPESEKLAMEGRIVQKLECR 124
Query: 120 PHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQP 179
P+ N Y +L E K+ + RQ++ +D
Sbjct: 125 PYADNT--YMKLKLETIRKASLPVRQVKQLD----------------------------- 153
Query: 180 VKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRG 239
R R D+ + +++F FE+ + ++ LV+ T+QP +LKEILNE+C YN +
Sbjct: 154 -------RARDDKEAVLNMLFAAFEKHQYYNIRDLVKITNQPIVYLKEILNEVCNYNIKN 206
Query: 240 TNQGTYELKPEYK 252
++ +ELKPEY+
Sbjct: 207 PHKNMWELKPEYR 219
>gi|330806103|ref|XP_003291013.1| hypothetical protein DICPUDRAFT_38380 [Dictyostelium purpureum]
gi|325078810|gb|EGC32441.1| hypothetical protein DICPUDRAFT_38380 [Dictyostelium purpureum]
Length = 256
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 115/257 (44%), Gaps = 48/257 (18%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQP-------------VAKVILSLDPLQS 61
++T AD VWL+K P +++ W + + + K+ LS+ L S
Sbjct: 12 INTDNADNQVWLIKVPKFLSEHWNGIGKGEIGKIHIKGGDNVNFYFYIIKITLSISGL-S 70
Query: 62 DSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPH 121
++ +F + T+A + ++ P+ +FSE + G +A+EG + + D+K
Sbjct: 71 ENNEFQLMTSANNLET---------------QPLKIFSEDSDGSLALEGNIGLRCDIKID 115
Query: 122 EKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVH------MRPMPGMVGLISSNSKDKK 175
++ Y L + R K K R +VID+ R GL + DKK
Sbjct: 116 VQS-SSYRELMKTRHTKYNTKTRMTKVIDDKELFTPAIFNPNRVQVSTTGLGKRKTTDKK 174
Query: 176 KAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVY 235
+ P E+ D++F F + W LK L ET QP +LK++L ++C+
Sbjct: 175 EKLP------------EDEVIDLIFDAFRNKSYWDLKGLEAETGQPKGYLKQVLEKVCIL 222
Query: 236 NKRGTNQGTYELKPEYK 252
NKRG + YELK E+K
Sbjct: 223 NKRGAHNHLYELKSEFK 239
>gi|91082807|ref|XP_968134.1| PREDICTED: similar to AGAP007002-PA [Tribolium castaneum]
gi|270007102|gb|EFA03550.1| hypothetical protein TcasGA2_TC013555 [Tribolium castaneum]
Length = 266
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 126/259 (48%), Gaps = 41/259 (15%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQ---------------NQASSQDSQPVAKVILSLDP 58
+LD + A R VWL+K P VA W+ N Q S ++ IL+L+
Sbjct: 10 DLDLSNATRGVWLVKVPKYVANRWEKAPSDMEVGKLKITKNGTPPQVSLTLSSAILNLNE 69
Query: 59 LQSDSM--QFTMETTAVSNDSLNRPKSYSLNMFKDFVPM---SVFSESNQGKVAMEGKVE 113
+S+ ++ + V+ +L +F +P +V E+ K+ MEGK+
Sbjct: 70 PGEESIPKDHRLDVSKVTQQTLG--------VFSHVIPTQTDAVVPETE--KLYMEGKIV 119
Query: 114 HKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKD 173
K + +P+ N Y +L E K+ + R+++ +D + +P+ S+ K+
Sbjct: 120 QKLECRPYADNC--YMKLKLESIRKASLPTRKVKQLDRVVTSY-KPV--------SDHKN 168
Query: 174 KKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELC 233
+ K+ E K+ R D+ + +++F FE+ + ++ LV+ T QP +LKEIL E+C
Sbjct: 169 NIEYMERKKAEGKKARDDKDAVLEMLFAAFEKHQYYNIRDLVKITKQPITYLKEILKEVC 228
Query: 234 VYNKRGTNQGTYELKPEYK 252
YN + ++ +ELKPEY+
Sbjct: 229 NYNLKNPHKNMWELKPEYR 247
>gi|164448676|ref|NP_001096603.1| general transcription factor IIF, polypeptide 2a isoform 2 [Danio
rerio]
gi|156230595|gb|AAI52268.1| MGC174761 protein [Danio rerio]
Length = 249
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 123/251 (49%), Gaps = 24/251 (9%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQD--------SQPVAKVILSLDPLQSD 62
G+ +L AK + VWL+K P +++ W + +Q A+V +L+ +
Sbjct: 5 GEVDLTGAKQNAGVWLVKVPKYLSQQWTKATGRGEVGKLRISKNQGKAEVSFTLNEELT- 63
Query: 63 SMQFTMETTAVSNDSLNRPKSYSLNM-FKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPH 121
T+ET + P+ + + ++VF+E++ K+A+EG V + + +P
Sbjct: 64 ----TIETIGEKTSMVRAPREHPFTLQTVGGQTLAVFTENSSDKIALEGVVVQRAECRPA 119
Query: 122 EKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVK 181
E Y RL + + + R Q +D + +P+ +N + K
Sbjct: 120 VS--ESYMRLKKLQIEELSKPLRFSQQLDKAVTTNYKPV--------ANHAYNLDYEKRK 169
Query: 182 QTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 241
+ E KR R D+ ++ D++F FE+ + +K LV T QP +LKEIL ++ +YN +GT+
Sbjct: 170 KEEGKRARADKQQVLDMLFSAFEKHQFYNIKDLVDITKQPVIYLKEILRDIGIYNVKGTH 229
Query: 242 QGTYELKPEYK 252
+ T+ELKPEY+
Sbjct: 230 KNTWELKPEYR 240
>gi|194741034|ref|XP_001952994.1| GF17437 [Drosophila ananassae]
gi|190626053|gb|EDV41577.1| GF17437 [Drosophila ananassae]
Length = 281
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 127/261 (48%), Gaps = 36/261 (13%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAV 73
+LD + A R VWL+K P +A+ W+ S+ D V K+ +S P Q + ++ +
Sbjct: 15 DLDLSNAGRGVWLVKVPKYIAQKWEKAPSNMD---VGKLRISKTPGQKAQVSLSLTPAVL 71
Query: 74 SNDSLNR-PKSYSLNMFK-DFVPMSVFSESNQGKVA--------------------MEGK 111
+ D + P + L++ + + VFS +Q ++A MEG+
Sbjct: 72 ALDPEEKIPTEHVLDVSQVTKQTLGVFSHMSQAEMAANNGKENSTAPALSDNEKLYMEGR 131
Query: 112 VEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNS 171
+ K + +P N Y +L E K+ R++Q ID + +P+ I
Sbjct: 132 IVQKLECRPIADNC--YMKLKLESIRKASEPQRRVQPIDKIVQ-NFKPVKDHAHNIEY-- 186
Query: 172 KDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNE 231
+++KKA E K+ R D+ + D++F FE+ + +K LV+ T+QP +LKEIL +
Sbjct: 187 RERKKA------EGKKARDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKD 240
Query: 232 LCVYNKRGTNQGTYELKPEYK 252
+C YN + ++ +ELK EY+
Sbjct: 241 VCDYNMKNPHKNMWELKKEYR 261
>gi|449280331|gb|EMC87658.1| General transcription factor IIF subunit 2 [Columba livia]
Length = 262
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 135/264 (51%), Gaps = 37/264 (14%)
Query: 12 KGNLDT--AKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM- 68
KG LD AK + +WL+K P +++ W N+AS + V K+ ++ + +++ + FT+
Sbjct: 4 KGELDLTGAKQNTGMWLVKVPKYLSQQW-NKASGRGE--VGKLRITKNQGRTE-VSFTLN 59
Query: 69 ETTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESN-------------QGKVAM 108
E A +D +P S S F+ ++VF+ES+ K+A+
Sbjct: 60 EELANISDIGGKPTSVSAPREHPFILQSVGGQTLTVFTESSVESQPDEKSESSSSDKLAL 119
Query: 109 EGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLIS 168
EG V + + +P E Y +L R + +S R Q +D + +P+
Sbjct: 120 EGIVVQRAECRPAAS--ENYMKLKRLQIEESSKPVRLSQQLDKAVTTNYKPV-------- 169
Query: 169 SNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEI 228
+N + + + K+ + KR R D+ ++ D++F FE+ + +K LV T QP +LKEI
Sbjct: 170 ANHQYNIEYEKKKKEDGKRARADKQQVLDMLFSAFEKHQYYNIKDLVDITKQPVIYLKEI 229
Query: 229 LNELCVYNKRGTNQGTYELKPEYK 252
L E+ +YN +GT++ T+ELKPEY+
Sbjct: 230 LREIGIYNVKGTHKNTWELKPEYR 253
>gi|195055594|ref|XP_001994698.1| GH14638 [Drosophila grimshawi]
gi|193892461|gb|EDV91327.1| GH14638 [Drosophila grimshawi]
Length = 287
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 120/270 (44%), Gaps = 50/270 (18%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQD----------------SQPVAKVILSLD 57
+LD + A R VWL+K P +A+ W+ ++ D S + +L+LD
Sbjct: 15 DLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRISKTPGQKAQVSLSLTPAVLALD 74
Query: 58 PLQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGK------------ 105
P + + ++ + V+ +L +F P + S+ GK
Sbjct: 75 PDEKIPTEHVLDVSQVTKQTLG--------VFSHMTPTEAAAGSSNGKENGAAGASATPD 126
Query: 106 ---VAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPG 162
+ MEG++ K + +P Y +L E K+ R++Q ID + +P+
Sbjct: 127 SEKLYMEGRIVQKLECRPIADTC--YMKLKLESIRKASEPQRRVQPIDKIVQ-NYKPVKD 183
Query: 163 MVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPA 222
I + K+ E K+ R D+ + D++F FE+ + +K LV+ T+QP
Sbjct: 184 HAHNIEYRER--------KKAEGKKARDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPI 235
Query: 223 QFLKEILNELCVYNKRGTNQGTYELKPEYK 252
+LKEIL ++C YN + ++ +ELK EY+
Sbjct: 236 SYLKEILKDVCDYNMKNPHKNMWELKKEYR 265
>gi|148231943|ref|NP_001082266.1| general transcription factor IIF subunit 2 [Xenopus laevis]
gi|464520|sp|Q03123.1|T2FB_XENLA RecName: Full=General transcription factor IIF subunit 2; AltName:
Full=ATP-dependent helicase gtf2f2; AltName:
Full=Transcription initiation factor IIF subunit beta;
Short=TFIIF-beta; AltName: Full=Transcription initiation
factor RAP30
gi|65135|emb|CAA78835.1| transcription factor RAP30 [Xenopus laevis]
gi|49256181|gb|AAH73677.1| LOC398333 protein [Xenopus laevis]
Length = 264
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 136/264 (51%), Gaps = 36/264 (13%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L+ AK + +WL+K P +A+ W A + V K+ + + +++ + FT+ E
Sbjct: 6 GELDLNGAKQNTGMWLVKLPKYLAQQW---AKATGRGEVGKLRIVKNQGKTE-VSFTLNE 61
Query: 70 TTAVSNDSLNRPKSYSLNMFKD--FV-------PMSVFSESNQG------------KVAM 108
A D +P S ++ ++ F+ ++V +ES G K+A+
Sbjct: 62 ELASIQDIGGKPASSLVSTPREHPFLLQSVGGQTLTVLTESLSGQSEDKSENRVIDKLAL 121
Query: 109 EGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLIS 168
EG V H+ + +P + Y ++ R++ +S RQ Q ++ + +P+
Sbjct: 122 EGIVVHRAECRPAASD--NYMQMKRKQIEESSKPKRQSQQLEKAVTSNYKPV-------- 171
Query: 169 SNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEI 228
SN + + + K+ + KR R D+ ++ D++F FE+ + +K LV T QP +LKEI
Sbjct: 172 SNHQYNIEYEKKKKDDGKRARVDKHQVLDMLFSAFEKHQYYNIKDLVDITKQPVTYLKEI 231
Query: 229 LNELCVYNKRGTNQGTYELKPEYK 252
L ++ +YN +GT++ T+ELKPEY+
Sbjct: 232 LRDIGIYNMKGTHKNTWELKPEYR 255
>gi|312384124|gb|EFR28929.1| hypothetical protein AND_02541 [Anopheles darlingi]
Length = 271
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 121/260 (46%), Gaps = 36/260 (13%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSW----------------QNQASSQDSQPVAKVILSLDP 58
LD + A R VWL+K P +A W Q+ +Q S ++ ++++DP
Sbjct: 14 LDLSNAGRGVWLVKVPKYMANKWEKAPGNIEVGKLKIFKQSGQKTQVSLTLSDAVINIDP 73
Query: 59 LQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDM 118
+ ++ + V+ +L D VP K MEG++ K +
Sbjct: 74 AEEIPRDHRLDVSVVTKQTLGVFSHAVTTTRDDPVPEC-------EKQYMEGRIVQKLEC 126
Query: 119 KPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVH-MRPMPGMVGLISSNSKDKKKA 177
+P+ N Y ++ E K+ RQI+ ++ VH +P+ S+ K +
Sbjct: 127 RPYADNC--YMKMKLESIRKASQPARQIKSLEK--IVHNYKPV--------SDHKHNIED 174
Query: 178 QPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNK 237
+ K+ E K++R D+ + D++F FE+ + +K LV+ T QP +LKEIL E+C YN
Sbjct: 175 RERKKAEGKKSREDKNAVLDMLFNAFEKHQYYNIKDLVKLTRQPISYLKEILKEVCDYNM 234
Query: 238 RGTNQGTYELKPEYKKSVED 257
+ ++ +ELK EY+ ED
Sbjct: 235 KNPHKNMWELKKEYRHYKED 254
>gi|195389999|ref|XP_002053656.1| GJ23231 [Drosophila virilis]
gi|194151742|gb|EDW67176.1| GJ23231 [Drosophila virilis]
Length = 286
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 120/270 (44%), Gaps = 50/270 (18%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQD----------------SQPVAKVILSLD 57
+LD + A R VWL+K P +A+ W+ S+ D S + +L+LD
Sbjct: 15 DLDLSNAGRGVWLVKVPKYIAQKWEKAPSNMDVGKLRISKTPGQKAQVSLSLTPAVLALD 74
Query: 58 PLQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGK------------ 105
P + + ++ + V+ +L +F P + ++ GK
Sbjct: 75 PDEKIPTEHVLDVSQVTKQTLG--------VFSHMAPTEAAAVASNGKENGTGAASGTPD 126
Query: 106 ---VAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPG 162
+ MEG++ K + +P Y +L E K+ R++Q ID + +P+
Sbjct: 127 SEKLYMEGRIVQKLECRPIADTC--YMKLKLESIRKASEPQRRVQPIDK-IVQNYKPVKD 183
Query: 163 MVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPA 222
I + K+ E K+ R D+ + D++F FE+ + +K LV+ T+QP
Sbjct: 184 HAHNIEYRER--------KKAEGKKARDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPI 235
Query: 223 QFLKEILNELCVYNKRGTNQGTYELKPEYK 252
+LKEIL ++C YN + ++ +ELK EY+
Sbjct: 236 SYLKEILKDVCDYNMKNPHKNMWELKKEYR 265
>gi|348515667|ref|XP_003445361.1| PREDICTED: general transcription factor IIF subunit 2-like isoform
3 [Oreochromis niloticus]
Length = 259
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 126/251 (50%), Gaps = 26/251 (10%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM--ETT 71
+L K + VWL+K P +++ W A D V K+ + +++ + F++ E T
Sbjct: 8 DLSGVKQSKGVWLVKVPKYLSQQWDKAAEKGD---VGKITIGKKQGKTE-VCFSLIDELT 63
Query: 72 AV----SND-SLNRPKSYSLNMFK-DFVPMSVFS----ESNQGKVAMEGKVEHKFDMKPH 121
A+ ND SL PK + M M+VFS ES + ++++EG V H+ + +P
Sbjct: 64 ALDAVGENDASLQVPKDHPFTMHTVGGQTMAVFSHSDTESYKNEISLEGMVVHRAECRP- 122
Query: 122 EKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVK 181
+ Y +L + + +S+ R Q ++ +P+ +N + + K
Sbjct: 123 -VVTDSYMKLKKLQIKESVKPQRLSQQLERAVTTIFKPV--------ANHDFNVEYEKKK 173
Query: 182 QTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 241
+TE K R +R + D++F FE+ + +K LV T QP +LKEI+ E+ YN +G +
Sbjct: 174 KTEGKMVRAERQLVLDMLFSAFEKHQYYNIKALVDITKQPVTYLKEIMREIGTYNSKGAH 233
Query: 242 QGTYELKPEYK 252
+ T+ELKPEY+
Sbjct: 234 KSTWELKPEYR 244
>gi|432851973|ref|XP_004067133.1| PREDICTED: general transcription factor IIF subunit 2-like isoform
2 [Oryzias latipes]
Length = 249
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 129/246 (52%), Gaps = 21/246 (8%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKV-ILSLDPLQSDSMQFTM--ET 70
+L AK + VWL+K P +A+ W A + V K+ I+ L + FT+ E
Sbjct: 8 DLTGAKLNTGVWLVKVPKYLAQQW---AKATGRGEVGKLRIIKKGNLGKPEVSFTLNEEL 64
Query: 71 T---AVSNDSLNRPKSYSLNMFKDFVPM-SVFSESNQGKVAMEGKVEHKFDMKPHEKNME 126
T + + +++ P+ + M M +VF+ES+ K+A+EG V + + +P E
Sbjct: 65 TIIEGIEDKTVSAPRDHPFTMQSVGGQMLAVFTESSSDKIALEGVVVQRAECRPAVS--E 122
Query: 127 EYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVK 186
Y +L R + +S +R Q + + +P+ +N + ++ + K+ E K
Sbjct: 123 SYMKLKRLQIEESSKPSRLSQQLSKP-VTNYKPV--------ANHEYNREYEKKKKEEGK 173
Query: 187 RTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYE 246
R R D+ ++ +++F FE+ + +K LV T QP +LKEIL ++ +YN +GT++ T+E
Sbjct: 174 RARADKQQVLEMLFSAFEKHQYYNIKDLVDITKQPVIYLKEILRDIGIYNVKGTHKNTWE 233
Query: 247 LKPEYK 252
LKPEY+
Sbjct: 234 LKPEYR 239
>gi|195157940|ref|XP_002019852.1| GL12621 [Drosophila persimilis]
gi|194116443|gb|EDW38486.1| GL12621 [Drosophila persimilis]
Length = 282
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 124/260 (47%), Gaps = 34/260 (13%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQD----------------SQPVAKVILSLD 57
+LD + A R VWL+K P +A+ W+ S+ D S + +L+LD
Sbjct: 15 DLDLSNAGRGVWLVKVPKYIAQKWEKAPSNMDVGKLRISKTPGQKAQVSLSLTPAVLALD 74
Query: 58 PLQSDSMQFTMETTAVSNDSLN-----RPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKV 112
P + + ++ + V+ +L P++ + N+ K+ + N+ K+ MEG++
Sbjct: 75 PDEKIPTEHVLDVSQVTKQTLGVFSHMAPEA-AANIGKENSTAPGAAPDNE-KLYMEGRI 132
Query: 113 EHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSK 172
K + +P Y +L E K+ R++Q ID + +P+ I +
Sbjct: 133 VQKLECRPIADTC--YMKLKLESIRKASEPQRRVQPIDKIVQ-NFKPVKDHAHNIEYRER 189
Query: 173 DKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNEL 232
K+ E K+ R D+ + D++F FE+ + +K LV+ T+QP +LKEIL ++
Sbjct: 190 --------KKAEGKKARDDKNSVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDV 241
Query: 233 CVYNKRGTNQGTYELKPEYK 252
C YN + ++ +ELK EY+
Sbjct: 242 CDYNMKNPHKNMWELKKEYR 261
>gi|326914113|ref|XP_003203372.1| PREDICTED: general transcription factor IIF subunit 2-like
[Meleagris gallopavo]
Length = 262
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 139/270 (51%), Gaps = 38/270 (14%)
Query: 12 KGNLDT--AKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM- 68
KG LD AK + +WL+K P +++ W ++AS + V K+ ++ + +++ + FT+
Sbjct: 4 KGELDLTGAKQNTGMWLVKVPKYLSQQW-SKASGRGE--VGKLRIAKNQGRTE-VSFTLN 59
Query: 69 ETTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSES---NQG----------KVAM 108
E A +D +P S S F+ ++VF+ES NQ K+++
Sbjct: 60 EELASISDIGGKPASVSAPREHPFLLQSVGGQTLTVFTESSTENQSEEKSESSSYDKLSL 119
Query: 109 EGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLIS 168
EG V + + +P E Y +L R + +S R Q +D + +P+
Sbjct: 120 EGIVVQRAECRPAAS--ENYMKLKRFQIEESSKPVRLSQQLDKAVTTNYKPV-------- 169
Query: 169 SNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEI 228
+N + + + K+ + KR R D+ ++ D++F FE+ + +K LV T QP +LKEI
Sbjct: 170 ANHQYNIEYEKKKKEDGKRARADKQQVLDMLFSAFEKHQYYNIKDLVDITKQPVIYLKEI 229
Query: 229 LNELCVYNKRGTNQGTYELKPEYKK-SVED 257
L E+ +YN +GT++ T+ELKPEY+ VED
Sbjct: 230 LREIGIYNVKGTHKNTWELKPEYRHYQVED 259
>gi|125778480|ref|XP_001359998.1| GA19669 [Drosophila pseudoobscura pseudoobscura]
gi|54639748|gb|EAL29150.1| GA19669 [Drosophila pseudoobscura pseudoobscura]
Length = 282
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 124/260 (47%), Gaps = 34/260 (13%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQD----------------SQPVAKVILSLD 57
+LD + A R VWL+K P +A+ W+ S+ D S + +L+LD
Sbjct: 15 DLDLSNAGRGVWLVKVPKYIAQKWEKAPSNMDVGKLRISKTPGQKAQVSLSLTPAVLALD 74
Query: 58 PLQSDSMQFTMETTAVSNDSLN-----RPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKV 112
P + + ++ + V+ +L P++ + N+ K+ + N+ K+ MEG++
Sbjct: 75 PDEKIPTEHVLDVSQVTKQTLGVFSHMAPEA-ATNIGKENSTAPGAAPDNE-KLYMEGRI 132
Query: 113 EHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSK 172
K + +P Y +L E K+ R++Q ID + +P+ I +
Sbjct: 133 VQKLECRPIADTC--YMKLKLESIRKASEPQRRVQPIDKIVQ-NFKPVKDHAHNIEYRER 189
Query: 173 DKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNEL 232
K+ E K+ R D+ + D++F FE+ + +K LV+ T+QP +LKEIL ++
Sbjct: 190 --------KKAEGKKARDDKNSVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDV 241
Query: 233 CVYNKRGTNQGTYELKPEYK 252
C YN + ++ +ELK EY+
Sbjct: 242 CDYNMKNPHKNMWELKKEYR 261
>gi|156555618|ref|XP_001602997.1| PREDICTED: general transcription factor IIF subunit 2-like [Nasonia
vitripennis]
Length = 270
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 126/262 (48%), Gaps = 29/262 (11%)
Query: 6 SNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQ 65
S+ + + +LD + A R VWL+K P +A W+ + + VAK+ ++ Q +
Sbjct: 4 SSAAHAEKDLDLSNAGRGVWLVKVPKYIASKWEKAPGNIE---VAKLRITKHVKQKAEVT 60
Query: 66 FTMETTAVS---NDSLNRPKSYSLNMFKDF-VPMSVFSE-----------SNQGKVAMEG 110
+ ++ + PK + L++ + VFS K++MEG
Sbjct: 61 LKLSEAVLALKEPGEQDIPKQHKLDVTTVIHQTLGVFSHLPSPNNADTSAPEADKLSMEG 120
Query: 111 KVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSN 170
K+ K + +PH N Y +L E K+ I RQ+Q + + +P+ S+
Sbjct: 121 KIVQKLECRPHADNT--YMKLKLESIKKASIPQRQVQQLQRA-VQNFKPV--------SD 169
Query: 171 SKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILN 230
K + K+ E K+ R D+ + +++F FE+ + +K LV+ T QP +LKEILN
Sbjct: 170 HKHNIEYAEKKKAEGKKMRDDKAVVLEMLFAAFEKHQYYNIKDLVKITRQPVVYLKEILN 229
Query: 231 ELCVYNKRGTNQGTYELKPEYK 252
E+C YN + ++ +ELKPEY+
Sbjct: 230 EVCNYNLKNPHRNMWELKPEYR 251
>gi|391326183|ref|XP_003737600.1| PREDICTED: general transcription factor IIF subunit 2-like
[Metaseiulus occidentalis]
Length = 266
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 126/261 (48%), Gaps = 31/261 (11%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMET 70
G ++D + A R VWL+K P +A+ W+ A ++ ++ +S P ++ + F +
Sbjct: 8 GDRDVDCSNACRGVWLVKVPKYIAEKWKKAAPLSEA---GRIKISRQPNGTNDITFKLSN 64
Query: 71 TA----VSNDS---LNRPKSYSLNMFKDFVPMSVFS---ESNQGKVAMEGKVEHKFDMKP 120
A + D ++ + SL ++ P +V E QGK+ +EG + K + +P
Sbjct: 65 VAEEEKIPTDHKFVISNIQQQSLAVYSQ--PKAVNEDGIECGQGKICLEGSIVQKGECRP 122
Query: 121 HEKNMEEYGRLCRERTNKSMIKNRQI---QVIDNDHGVHMRPMPGMVGLISSNSKDKKKA 177
++ R+ S K I +V+ N +P+ V + ++
Sbjct: 123 IGNDIHYMDLKRRKIMEASQPKRAAIGLERVVQN-----FKPVARHVHQVEYEAR----- 172
Query: 178 QPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNK 237
K+ E K+ R DR ++ +++F FE+ + +K L + T QPA FLKE+L E+C YN
Sbjct: 173 ---KKNEGKKARGDRDQVLEMLFAAFEKHQYYNIKDLERITKQPAPFLKELLKEVCNYNV 229
Query: 238 RGTNQGTYELKPEYKKSVEDG 258
+ ++ +ELKPEY+ ++G
Sbjct: 230 KNPHRNMWELKPEYRHYKKEG 250
>gi|196011287|ref|XP_002115507.1| hypothetical protein TRIADDRAFT_59521 [Trichoplax adhaerens]
gi|190581795|gb|EDV21870.1| hypothetical protein TRIADDRAFT_59521 [Trichoplax adhaerens]
Length = 256
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 125/267 (46%), Gaps = 53/267 (19%)
Query: 10 NGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKV-ILSLDPLQSDSMQFTM 68
+GK ++D + AD+SVWL+K P V+++WQ S + V V I P ++ M F +
Sbjct: 3 DGKESVDVSSADQSVWLLKVPKFVSQAWQKSESGK----VGSVKIQKKGP--NEEMLFLL 56
Query: 69 E---TTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAME---------------- 109
E TTA S+ N P Y L V +E Q +VA++
Sbjct: 57 ENSLTTATSSGEANIPTEYKL----------VSNECGQYQVALKRSLSIDNAADSSTEPE 106
Query: 110 --GKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLI 167
GKV K D++ + M Y L R +T + RQ + + + RP+ V L
Sbjct: 107 IVGKVVRKIDLRALNERM--YLNLKRRKTELAKSPRRQPKFLSQVVNTY-RPVSDHVEL- 162
Query: 168 SSNSKDKKKAQPV-KQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLK 226
PV K+ E KR R DR +++++F FE+ ++LK L T QP +LK
Sbjct: 163 ---------RVPVQKKEEGKRARADRDHVKEMLFAAFEKHQYYSLKSLADITQQPVMYLK 213
Query: 227 EILNELCVYN-KRGTNQGTYELKPEYK 252
I++E+ +N K + +ELKPEY+
Sbjct: 214 GIMHEIGQFNTKEKRYRNLWELKPEYR 240
>gi|157138343|ref|XP_001657254.1| hypothetical protein AaeL_AAEL013998 [Aedes aegypti]
gi|108869504|gb|EAT33729.1| AAEL013998-PA [Aedes aegypti]
Length = 270
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 128/262 (48%), Gaps = 39/262 (14%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQAS----------------SQDSQPVAKVILSLDP 58
LD + A R VWL+K P +A W+ +Q S +++ ++++DP
Sbjct: 14 LDLSNAGRGVWLVKVPKYIANKWEKAPGNIEVGKLKISKQVGQKAQVSLTLSEAVINIDP 73
Query: 59 LQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSE-SNQG-KVAMEGKVEHKF 116
+ + ++ + V+ +L +F VP + + +G K+ MEG++ +
Sbjct: 74 GEEIPREHKLDVSVVTKQTLG--------VFSHSVPSGTKEDGAPEGEKLFMEGRIVQRL 125
Query: 117 DMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVH-MRPMPGMVGLISSNSKDKK 175
+ +P N Y ++ E K+ RQ++ ++ VH +P+ N +DK+
Sbjct: 126 ECRPLGDNA--YMKMKLESIRKASQPARQVKSLEK--IVHNFKPVSDH----KHNIEDKE 177
Query: 176 KAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVY 235
+ K+ E K++R D+ + D++F FE+ + +K LV+ T QP +LKEIL E+C Y
Sbjct: 178 R----KKAEGKKSRDDKNAVLDMLFNAFEKHQYYNIKDLVKITRQPISYLKEILKEVCDY 233
Query: 236 NKRGTNQGTYELKPEYKKSVED 257
N + ++ +ELK EY+ +D
Sbjct: 234 NMKNPHKNMWELKKEYRHYKDD 255
>gi|307203229|gb|EFN82384.1| General transcription factor IIF subunit 2 [Harpegnathos saltator]
Length = 272
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 129/269 (47%), Gaps = 33/269 (12%)
Query: 6 SNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQ 65
+N + + LD + A R VWL+K P +A W+ + + V K+ ++ +P Q +
Sbjct: 3 TNVTHMEKELDLSNAGRGVWLVKVPKYIANKWEKAPGNIE---VGKLKITKNPGQKAEVS 59
Query: 66 FTMETTAVS---NDSLNRPKSYSLNM----------FKDFVPMS----VFSESNQGKVAM 108
+ ++ + PK + L++ F P + + E+ K+ M
Sbjct: 60 LRLSEAVLALKESGEEEIPKQHRLDVTTVTTQILGVFSHVTPSTSSDAIVPETE--KIFM 117
Query: 109 EGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLIS 168
EG++ K + +P+ N Y +L E ++ + RQ+Q +D + +P+
Sbjct: 118 EGRIVQKLECRPYADNC--YMKLKLESIKRASVPQRQVQQLDRVVQ-NFKPV-------- 166
Query: 169 SNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEI 228
S+ K + K+ E K+ R D+ + ++F FER + +K LV+ T QP +LKEI
Sbjct: 167 SDHKHNIEYAEKKKAEGKKMRDDKEAVLGMLFAAFERHQYYNIKDLVKITRQPIVYLKEI 226
Query: 229 LNELCVYNKRGTNQGTYELKPEYKKSVED 257
LNE+C YN + ++ +ELKPEY+ ED
Sbjct: 227 LNEVCNYNLKNPHRNMWELKPEYRHYKED 255
>gi|349605491|gb|AEQ00709.1| General transcription factor IIF subunit 2-like protein, partial
[Equus caballus]
Length = 231
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 121/236 (51%), Gaps = 22/236 (9%)
Query: 25 WLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-ETTAVSNDSLNRPKS 83
WL+K P +++ W A + V K+ ++ + +++ + FT+ E A +D +P S
Sbjct: 1 WLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLNEDLANIHDIGGKPAS 56
Query: 84 YSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERT 136
S FV ++VF+ES+ K+++EG V + + +P E Y RL R +
Sbjct: 57 VSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRP--AASENYMRLKRLQI 114
Query: 137 NKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELE 196
+S R Q +D + +P+ +N + + + K+ + KR R D+ +
Sbjct: 115 EESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIEYERKKKEDGKRARADKQHVL 166
Query: 197 DIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK 252
D++F FE+ + LK LV T QP +LKEIL E+ + N +G ++ T+ELKPEY+
Sbjct: 167 DMLFSAFEKHQYYNLKDLVDITKQPVLYLKEILKEIGIQNVKGIHKNTWELKPEYR 222
>gi|195451370|ref|XP_002072887.1| GK13842 [Drosophila willistoni]
gi|194168972|gb|EDW83873.1| GK13842 [Drosophila willistoni]
Length = 280
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 118/255 (46%), Gaps = 28/255 (10%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQD----------------SQPVAKVILSLD 57
+LD + A R VWL+K P +A+ W+ S+ D S + +L+LD
Sbjct: 16 DLDLSNAGRGVWLVKVPKYIAQKWEKAPSNMDVGKLRISKTPGQKAQVSLSLTPAVLALD 75
Query: 58 PLQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFD 117
P + + ++ + V+ +L + + + N+ K+ MEG++ K +
Sbjct: 76 PEEKIPTEHVLDVSQVTKQTLGVFSHMAPAEAAAAAAAAAAAADNE-KLYMEGRIVQKLE 134
Query: 118 MKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKA 177
+P Y +L E K+ R++Q ID + +P+ I +
Sbjct: 135 CRPIADTC--YMKLKLESIRKASEPQRRVQPIDKIVQ-NYKPVKDHAHNIEYRER----- 186
Query: 178 QPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNK 237
K+ E K+ R D+ + D++F FE+ + +K LV+ T+QP +LKEIL ++C YN
Sbjct: 187 ---KKAEGKKARDDKNAVMDMLFNAFEKHQYYNIKDLVKITNQPISYLKEILKDVCDYNM 243
Query: 238 RGTNQGTYELKPEYK 252
+ ++ +ELK EY+
Sbjct: 244 KNPHKNMWELKKEYR 258
>gi|353526286|sp|Q54KT7.2|T2FB_DICDI RecName: Full=General transcription factor IIF subunit 2; AltName:
Full=ATP-dependent helicase gtf2f2; AltName:
Full=Transcription initiation factor IIF subunit beta;
Short=TFIIF-beta
Length = 241
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 113/249 (45%), Gaps = 37/249 (14%)
Query: 13 GNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAK----VILSLDPLQSDSMQFTM 68
G ++T AD VWL+K P +++SWQ + Q K + LS P +F +
Sbjct: 11 GEVNTDNADNQVWLIKVPKFLSESWQKIGQGEIGQIHIKGGDNISLSYGP--DVGQEFQL 68
Query: 69 ETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEY 128
TTA + D+ P+ +FSE G +A+EG + + D+K ++ +Y
Sbjct: 69 ITTANTLDN---------------QPLKIFSEDKDGALALEGNIGLRCDIKIDVES-PQY 112
Query: 129 GRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRT 188
L + R K K R QVID P L +N K K V T+ K++
Sbjct: 113 RDLMKSRHTKYNTKTRMTQVIDESE--LFTPT-----LFDAN---KVKVSTVGITQKKKS 162
Query: 189 RRD-----RGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQG 243
E+ D++F F + + LK L T+QP LK IL ++C+ NKRG
Sbjct: 163 TDKKEKLPEDEVLDLIFSAFRAEKHLDLKTLESFTEQPKNHLKTILEKVCILNKRGPYHH 222
Query: 244 TYELKPEYK 252
YELKPE++
Sbjct: 223 LYELKPEFR 231
>gi|348515665|ref|XP_003445360.1| PREDICTED: general transcription factor IIF subunit 2-like isoform
2 [Oreochromis niloticus]
Length = 271
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 126/263 (47%), Gaps = 38/263 (14%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM--ETT 71
+L K + VWL+K P +++ W A D V K+ + +++ + F++ E T
Sbjct: 8 DLSGVKQSKGVWLVKVPKYLSQQWDKAAEKGD---VGKITIGKKQGKTE-VCFSLIDELT 63
Query: 72 AV----SND-SLNRPKSYSLNMFK-DFVPMSVFSESNQGK----------------VAME 109
A+ ND SL PK + M M+VFS S+ G+ +++E
Sbjct: 64 ALDAVGENDASLQVPKDHPFTMHTVGGQTMAVFSHSDTGQSKPTTSPAETGSGRDEISLE 123
Query: 110 GKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISS 169
G V H+ + +P + Y +L + + +S+ R Q ++ +P+ +
Sbjct: 124 GMVVHRAECRP--VVTDSYMKLKKLQIKESVKPQRLSQQLERAVTTIFKPV--------A 173
Query: 170 NSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEIL 229
N + + K+TE K R +R + D++F FE+ + +K LV T QP +LKEI+
Sbjct: 174 NHDFNVEYEKKKKTEGKMVRAERQLVLDMLFSAFEKHQYYNIKALVDITKQPVTYLKEIM 233
Query: 230 NELCVYNKRGTNQGTYELKPEYK 252
E+ YN +G ++ T+ELKPEY+
Sbjct: 234 REIGTYNSKGAHKSTWELKPEYR 256
>gi|432851975|ref|XP_004067134.1| PREDICTED: general transcription factor IIF subunit 2-like isoform
3 [Oryzias latipes]
Length = 242
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 125/243 (51%), Gaps = 22/243 (9%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETT-- 71
+L AK + VWL+K P +A+ W A + V K L ++ S E T
Sbjct: 8 DLTGAKLNTGVWLVKVPKYLAQQW---AKATGRGEVGK----LRIIKYVSFTLNEELTII 60
Query: 72 -AVSNDSLNRPKSYSLNMFKDFVPM-SVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYG 129
+ + +++ P+ + M M +VF+ES+ K+A+EG V + + +P E Y
Sbjct: 61 EGIEDKTVSAPRDHPFTMQSVGGQMLAVFTESSSDKIALEGVVVQRAECRPAVS--ESYM 118
Query: 130 RLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTR 189
+L R + +S +R Q + + +P+ +N + ++ + K+ E KR R
Sbjct: 119 KLKRLQIEESSKPSRLSQQLSKP-VTNYKPV--------ANHEYNREYEKKKKEEGKRAR 169
Query: 190 RDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKP 249
D+ ++ +++F FE+ + +K LV T QP +LKEIL ++ +YN +GT++ T+ELKP
Sbjct: 170 ADKQQVLEMLFSAFEKHQYYNIKDLVDITKQPVIYLKEILRDIGIYNVKGTHKNTWELKP 229
Query: 250 EYK 252
EY+
Sbjct: 230 EYR 232
>gi|350416874|ref|XP_003491146.1| PREDICTED: general transcription factor IIF subunit 2-like [Bombus
impatiens]
Length = 271
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 129/269 (47%), Gaps = 33/269 (12%)
Query: 6 SNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQ 65
+N + + LD + A R VWL+K P +A W+ + + V K+ ++ +P Q +
Sbjct: 3 TNMSHTEKELDLSNAGRGVWLVKVPKYIANKWEKAPGNIE---VGKLKITKNPGQKAEVS 59
Query: 66 FTMETTAVSNDSLNR---PKSYSLNM----------FKDFVPMS----VFSESNQGKVAM 108
+ ++ PK + L++ F P S + E+ K+ M
Sbjct: 60 LRLSEAVLALKEPGEEEIPKQHRLDVTTVTKQMLGVFSHVTPSSSSDSIVPETE--KLYM 117
Query: 109 EGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLIS 168
EG++ K + +P+ N Y +L + ++ + RQ+Q +D + +P+
Sbjct: 118 EGRIVQKLECRPYADNC--YMKLKLQSIKRASVPQRQVQQLDRVVQ-NFKPV-------- 166
Query: 169 SNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEI 228
S+ K + K+ E K+ R D+ + D++F FE+ + ++ LV+ T QP +LKEI
Sbjct: 167 SDHKHNIEYAEKKKAEGKKMRDDKDAVLDMLFAAFEKHQYYNIRDLVKITRQPIVYLKEI 226
Query: 229 LNELCVYNKRGTNQGTYELKPEYKKSVED 257
LNE+C YN + ++ +ELKPEY+ E+
Sbjct: 227 LNEVCNYNLKNPHRNMWELKPEYRHYKEE 255
>gi|195107531|ref|XP_001998362.1| GI23671 [Drosophila mojavensis]
gi|193914956|gb|EDW13823.1| GI23671 [Drosophila mojavensis]
Length = 288
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 120/262 (45%), Gaps = 35/262 (13%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQD----------------SQPVAKVILSLDP 58
LD + A R VWL+K P +A+ W+ S+ D S + +L+LDP
Sbjct: 16 LDLSNAGRGVWLVKVPKYIAQKWEKAPSNMDVGKLRISKTPGQKAQVSLSLTPAVLALDP 75
Query: 59 LQSDSMQFTMETTAVSNDSLN--------RPKSYSLNMFKDFVPMSVFSESNQGKVAMEG 110
+ + ++ + V+ +L + + N K+ + + + K+ MEG
Sbjct: 76 DEKIPTEHVLDVSQVTKQTLGVFSHMAPTEATTAAANNGKENGSAAASATPDSEKLYMEG 135
Query: 111 KVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSN 170
++ K + +P Y +L E K+ R++Q ID + +P+ I
Sbjct: 136 RIVQKLECRPIADTC--YMKLKLESIRKASEPQRRVQPIDKIVQ-NYKPVKDHAHNIEYR 192
Query: 171 SKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILN 230
+ K+ E K+ R D+ + D++F FE+ + +K LV+ T+QP +LKEIL
Sbjct: 193 ER--------KKAEGKKARDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILK 244
Query: 231 ELCVYNKRGTNQGTYELKPEYK 252
++C YN + ++ +ELK EY+
Sbjct: 245 DVCDYNMKNPHKNMWELKKEYR 266
>gi|340719856|ref|XP_003398361.1| PREDICTED: general transcription factor IIF subunit 2-like [Bombus
terrestris]
Length = 271
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 129/269 (47%), Gaps = 33/269 (12%)
Query: 6 SNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQ 65
+N + + LD + A R VWL+K P +A W+ + + V K+ ++ +P Q +
Sbjct: 3 TNVSHTEKELDLSNAGRGVWLVKVPKYIANKWEKAPGNIE---VGKLKITKNPGQKAEVS 59
Query: 66 FTMETTAVSNDSLNR---PKSYSLNM----------FKDFVPMS----VFSESNQGKVAM 108
+ ++ PK + L++ F P S + E+ K+ M
Sbjct: 60 LRLSEAVLALKEPGEEEIPKQHRLDVTTVTKQMLGVFSHVTPSSSSDSIVPETE--KLYM 117
Query: 109 EGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLIS 168
EG++ K + +P+ N Y +L + ++ + RQ+Q +D + +P+
Sbjct: 118 EGRIVQKLECRPYADNC--YMKLKLQSIKRASVPQRQVQQLDRVVQ-NFKPV-------- 166
Query: 169 SNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEI 228
S+ K + K+ E K+ R D+ + D++F FE+ + ++ LV+ T QP +LKEI
Sbjct: 167 SDHKHNIEYAEKKKAEGKKMRDDKDAVLDMLFAAFEKHQYYNIRDLVKITRQPIVYLKEI 226
Query: 229 LNELCVYNKRGTNQGTYELKPEYKKSVED 257
LNE+C YN + ++ +ELKPEY+ E+
Sbjct: 227 LNEVCNYNLKNPHRNMWELKPEYRHYKEE 255
>gi|291190817|ref|NP_001167406.1| Transcription initiation factor IIF subunit beta [Salmo salar]
gi|223648348|gb|ACN10932.1| Transcription initiation factor IIF subunit beta [Salmo salar]
Length = 257
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 128/254 (50%), Gaps = 26/254 (10%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMET 70
G+ +L AK + VWL+K P +++ W A + V K+ + + +++ + FT+
Sbjct: 5 GEVDLTGAKQNTGVWLVKVPKYLSQQW---AKASGRGEVGKLRIGKNQGKAE-VAFTLNE 60
Query: 71 TAVSNDSLN-------RPKSYSLNM-FKDFVPMSVF----SESNQGKVAMEGKVEHKFDM 118
DSL P+ + M ++VF SES++ ++++EG V + +
Sbjct: 61 DLTMIDSLGDKPSGVQAPRDHPFTMQTVGGQTLAVFTETQSESSKERISLEGLVVQRAEC 120
Query: 119 KPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQ 178
+P E Y +L R + + R Q ++ + +P+ S N + +K
Sbjct: 121 RPAVS--ESYMKLKRLQIEELSKPLRLSQQLEKAVTTNYKPVANH----SYNLEYDRK-- 172
Query: 179 PVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKR 238
K+ E KR R D+ ++ D++F FE+ + +K LV T QP +LKEIL ++ +YN +
Sbjct: 173 --KKDEGKRARADKQQVLDMLFSAFEKHQYYNIKDLVDITKQPVSYLKEILRDIGIYNVK 230
Query: 239 GTNQGTYELKPEYK 252
GT++ T+ELKPEY+
Sbjct: 231 GTHKNTWELKPEYR 244
>gi|303288686|ref|XP_003063631.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454699|gb|EEH52004.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 489
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 75/146 (51%), Gaps = 9/146 (6%)
Query: 108 MEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLI 167
+EG V KFD++P + + Y + R ++ K R +Q V P+P ++
Sbjct: 336 LEGTVSEKFDVRPADVDDSLYREVSARRIAEATRKTRVVQASKGPSRVA--PLPTARNIV 393
Query: 168 SSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKE 227
K+ + T + R +RG LED + L+ER+ W+ KQL +ET QPA FLKE
Sbjct: 394 -------KREDGKEDTRERAERMERGALEDKLMGLYERRSLWSFKQLKEETRQPAMFLKE 446
Query: 228 ILNELCVYNKRGTNQGTYELKPEYKK 253
L+ L N+RG N G Y LK YK+
Sbjct: 447 TLDGLATLNRRGPNVGMYSLKDMYKR 472
>gi|380020787|ref|XP_003694260.1| PREDICTED: general transcription factor IIF subunit 2-like [Apis
florea]
Length = 271
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 129/269 (47%), Gaps = 33/269 (12%)
Query: 6 SNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQ 65
+N + + LD + A R VWL+K P +A W+ + + V K+ ++ +P Q +
Sbjct: 3 ANVSHTEKELDLSNAGRGVWLVKVPKYIANKWEKAPGNIE---VGKLKITKNPGQKAEVS 59
Query: 66 FTMETTAVSNDSLNR---PKSYSLNM----------FKDFVPMS----VFSESNQGKVAM 108
+ ++ PK + L++ F P S + E+ K+ M
Sbjct: 60 LRLSEAVLALKEPGEEEIPKQHRLDVTTVTKQMLGVFSHVTPSSSSDSIVPETE--KLYM 117
Query: 109 EGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLIS 168
EG++ K + +P+ N Y +L + ++ + RQ+Q +D + +P+
Sbjct: 118 EGRIVQKLECRPYADNC--YMKLKLQSIKRASVPQRQVQQLDRVVQ-NFKPV-------- 166
Query: 169 SNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEI 228
S+ K + K+ E K+ R D+ + D++F FE+ + ++ LV+ T QP +LKEI
Sbjct: 167 SDHKHNIEYAEKKKAEGKKMRDDKDAVLDMLFAAFEKHQYYNIRDLVKITRQPIVYLKEI 226
Query: 229 LNELCVYNKRGTNQGTYELKPEYKKSVED 257
LNE+C YN + ++ +ELKPEY+ E+
Sbjct: 227 LNEVCNYNLKNPHRNMWELKPEYRHYKEE 255
>gi|66564899|ref|XP_623868.1| PREDICTED: general transcription factor IIF subunit 2 isoform 1
[Apis mellifera]
Length = 271
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 129/269 (47%), Gaps = 33/269 (12%)
Query: 6 SNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQ 65
+N + + LD + A R VWL+K P +A W+ + + V K+ ++ +P Q +
Sbjct: 3 ANVSHTEKELDLSNAGRGVWLVKVPKYIANKWEKAPGNIE---VGKLKITKNPGQKAEVS 59
Query: 66 FTMETTAVSNDSLNR---PKSYSLNM----------FKDFVPMS----VFSESNQGKVAM 108
+ ++ PK + L++ F P S + E+ K+ M
Sbjct: 60 LRLSEAVLALKEPGEEEIPKQHRLDVTTVTKQMLGVFSHVTPSSSSDSIVPETE--KLYM 117
Query: 109 EGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLIS 168
EG++ K + +P+ N Y +L + ++ + RQ+Q +D + +P+
Sbjct: 118 EGRIVQKLECRPYADNC--YMKLKLQSIKRASVPQRQVQQLDRVVQ-NFKPV-------- 166
Query: 169 SNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEI 228
S+ K + K+ E K+ R D+ + D++F FE+ + ++ LV+ T QP +LKEI
Sbjct: 167 SDHKHNIEYAEKKKAEGKKMRDDKDAVLDMLFAAFEKHQYYNIRDLVKITRQPIVYLKEI 226
Query: 229 LNELCVYNKRGTNQGTYELKPEYKKSVED 257
LNE+C YN + ++ +ELKPEY+ E+
Sbjct: 227 LNEVCNYNLKNPHRNMWELKPEYRHYKEE 255
>gi|332018908|gb|EGI59454.1| General transcription factor IIF subunit 2 [Acromyrmex echinatior]
Length = 269
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 126/260 (48%), Gaps = 33/260 (12%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAVS 74
LD + A R VWL+K P +A W+ + + V K+ ++ +P Q + + ++
Sbjct: 12 LDLSNAGRGVWLVKVPKYIANKWEKAPGNIE---VGKLKITKNPGQKAEVSLKLSEAVLA 68
Query: 75 ---NDSLNRPKSYSLNM----------FKDFVPMS----VFSESNQGKVAMEGKVEHKFD 117
+ PK + L++ F P + + E+ K+ MEG++ K +
Sbjct: 69 LKESGEGEIPKQHRLDVTTVTRQMLGVFSHVAPSTSSDAIVPETE--KLFMEGRIVQKLE 126
Query: 118 MKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKA 177
+P+ N Y +L E ++ + RQ+Q +D + +P+ S+ K +
Sbjct: 127 CRPYADNC--YMKLKLESIKRASVPQRQVQQLDRVVQ-NFKPV--------SDHKHNIEY 175
Query: 178 QPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNK 237
K+ E K+ R D+ + D++F FE+ + ++ LV+ T QP +LKEILNE+C YN
Sbjct: 176 AEKKKAEGKKMRDDKDAVLDMLFAAFEKHQYYNIRDLVKITRQPIVYLKEILNEVCNYNL 235
Query: 238 RGTNQGTYELKPEYKKSVED 257
+ ++ +ELKPEY+ E+
Sbjct: 236 KNPHRNMWELKPEYRHYKEE 255
>gi|62955637|ref|NP_001017832.1| novel protein similar to H.sapiens GTF2F2, general transcription
factor IIF, polypeptide 2, 30kDa (GTF2F2, zgc:110187)
[Danio rerio]
gi|62202165|gb|AAH92783.1| Zgc:110187 [Danio rerio]
gi|182890810|gb|AAI65452.1| Zgc:110187 protein [Danio rerio]
Length = 256
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 120/248 (48%), Gaps = 25/248 (10%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSD---SMQFTMET 70
+L AK + VWL+K P +++ W A + V K L + Q S E
Sbjct: 9 DLTRAKQNTGVWLVKVPKYLSQQW---AKASGRGEVGK--LKIGKAQGKTVVSFNLNEEL 63
Query: 71 TAVSND-----SLNRPKSYSLNM-FKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKN 124
T V S+ P+ + M ++VF+ES+ K+A+EG V + + +P
Sbjct: 64 TVVDCSGEKISSVRSPREHPFTMQTVGGQTLAVFTESSD-KIALEGMVVQRAECRP--AV 120
Query: 125 MEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTE 184
E Y +L + + +S R Q ++ + +P+ SN + + K+ E
Sbjct: 121 SESYMKLKKLQIEESTKPLRFSQRLEKAITTNYKPV--------SNHSHNLEYEKRKKEE 172
Query: 185 VKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGT 244
KR R D+ ++ +++F FE+ + ++ LV T QP +LKEIL E+ VYN RG ++ T
Sbjct: 173 GKRARADKQKVLEMLFSAFEKHQFYNIRDLVDITKQPVIYLKEILREIGVYNSRGPHKST 232
Query: 245 YELKPEYK 252
+ELKPEY+
Sbjct: 233 WELKPEYR 240
>gi|118084831|ref|XP_417039.2| PREDICTED: general transcription factor IIF subunit 2 isoform 2
[Gallus gallus]
Length = 262
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 137/270 (50%), Gaps = 38/270 (14%)
Query: 12 KGNLDT--AKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM- 68
KG LD K + +WL+K P +++ W ++AS + V K+ ++ + +++ + FT+
Sbjct: 4 KGELDLTGVKQNTGMWLVKVPKYLSQQW-SKASGRGE--VGKLRIAKNQGRTE-VSFTLN 59
Query: 69 ETTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQ-------------GKVAM 108
E A +D +P + S F+ ++VF+ES+ K+++
Sbjct: 60 EELASISDIGGKPAAVSAPREHPFLLQNVGGQTLTVFTESSTESQPEEKSESGSYDKLSL 119
Query: 109 EGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLIS 168
EG V + + +P E Y +L R + +S R Q +D + +P+
Sbjct: 120 EGIVVQRAECRPAAS--ENYMKLKRFQIEESSKPVRLSQQLDKAVTTNYKPV-------- 169
Query: 169 SNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEI 228
+N + + + K+ + KR R D+ ++ D++F FE+ + +K LV T QP +LKEI
Sbjct: 170 ANHQYNIEYEKKKKEDGKRARADKQQVLDMLFSAFEKHQYYNIKDLVDITKQPVIYLKEI 229
Query: 229 LNELCVYNKRGTNQGTYELKPEYKK-SVED 257
L E+ +YN +GT++ T+ELKPEY+ VED
Sbjct: 230 LREIGIYNVKGTHKNTWELKPEYRHYQVED 259
>gi|66807241|ref|XP_637343.1| TFIIF subunit [Dictyostelium discoideum AX4]
gi|60465764|gb|EAL63840.1| TFIIF subunit [Dictyostelium discoideum AX4]
Length = 248
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 113/256 (44%), Gaps = 44/256 (17%)
Query: 13 GNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQ-----------PVAKVILSLDPLQS 61
G ++T AD VWL+K P +++SWQ + Q K+ LS P
Sbjct: 11 GEVNTDNADNQVWLIKVPKFLSESWQKIGQGEIGQIHIKGGDNYRYKYIKISLSYGP--D 68
Query: 62 DSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPH 121
+F + TTA + D+ P+ +FSE G +A+EG + + D+K
Sbjct: 69 VGQEFQLITTANTLDN---------------QPLKIFSEDKDGALALEGNIGLRCDIKID 113
Query: 122 EKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVK 181
++ +Y L + R K K R QVID P L +N K K V
Sbjct: 114 VES-PQYRDLMKSRHTKYNTKTRMTQVIDESE--LFTPT-----LFDAN---KVKVSTVG 162
Query: 182 QTEVKRTRRD-----RGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYN 236
T+ K++ E+ D++F F + + LK L T+QP LK IL ++C+ N
Sbjct: 163 ITQKKKSTDKKEKLPEDEVLDLIFSAFRAEKHLDLKTLESFTEQPKNHLKTILEKVCILN 222
Query: 237 KRGTNQGTYELKPEYK 252
KRG YELKPE++
Sbjct: 223 KRGPYHHLYELKPEFR 238
>gi|126305072|ref|XP_001362176.1| PREDICTED: general transcription factor IIF subunit 2-like
[Monodelphis domestica]
Length = 261
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 128/262 (48%), Gaps = 34/262 (12%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W +AS + V K+ ++ + +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTRVWLVKVPKYLSQQW-TKASGRGE--VGKLRIAKNQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYS----------------LNMFKDFVPMSV---FSESNQGKVAMEG 110
A D +P S S L +F + P SES ++++EG
Sbjct: 61 ELANICDIDGKPSSVSAPREHRFHLQSVGGQTLTVFTESSPEGQPEGNSESRNNQLSLEG 120
Query: 111 KVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSN 170
V + + +P E Y RL R + +S R Q +D + +P+ I+
Sbjct: 121 IVVQRAECRPAAS--ENYMRLKRLQIEESSKPVRLAQHLDKAVTTNFKPVANHQNNIAYE 178
Query: 171 SKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILN 230
K K+ KR R ++ ++ D++F FE+ + +K LV T QP +LKE+L
Sbjct: 179 KKKKEDG--------KRARAEKQQVLDMLFSAFEKHQYYNIKDLVDITKQPIIYLKELLR 230
Query: 231 ELCVYNKRGTNQGTYELKPEYK 252
E+ +YN +GT++ T+ELKPEY+
Sbjct: 231 EIGIYNVKGTHKNTWELKPEYR 252
>gi|383858209|ref|XP_003704594.1| PREDICTED: general transcription factor IIF subunit 2-like isoform
1 [Megachile rotundata]
Length = 272
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 125/260 (48%), Gaps = 33/260 (12%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAVS 74
LD + A R VWL+K P +A W+ + + V K+ ++ +P Q + + ++
Sbjct: 12 LDLSNAGRGVWLVKVPKYIANKWEKAPGNIE---VGKLKITKNPGQKAEVSLKLSEAVLA 68
Query: 75 NDSLNR---PKSYSLNM----------FKDFVPM----SVFSESNQGKVAMEGKVEHKFD 117
PK + L++ F P S+ E+ K+ MEG++ K +
Sbjct: 69 LKEPGEEEIPKQHRLDVTTVTKQMLGVFSHVTPSTSSDSIVPETE--KLYMEGRIVQKLE 126
Query: 118 MKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKA 177
+P+ N Y +L + ++ + RQ+Q +D + +P+ S+ K +
Sbjct: 127 CRPYADNC--YMKLKLQSIKRASVPQRQVQQLDRVVQ-NYKPV--------SDHKHNIEY 175
Query: 178 QPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNK 237
K+ E K+ R D+ + D++F FE+ + ++ LV+ T QP +LKEILNE+C YN
Sbjct: 176 AEKKKAEGKKMRDDKDTVLDMLFAAFEKHQYYNIRDLVKITRQPIVYLKEILNEVCNYNL 235
Query: 238 RGTNQGTYELKPEYKKSVED 257
+ ++ +ELKPEY+ E+
Sbjct: 236 KNPHRNMWELKPEYRHYKEE 255
>gi|118778639|ref|XP_308768.3| AGAP007002-PA [Anopheles gambiae str. PEST]
gi|116132481|gb|EAA04044.3| AGAP007002-PA [Anopheles gambiae str. PEST]
Length = 272
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 118/255 (46%), Gaps = 36/255 (14%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQAS----------------SQDSQPVAKVILSLDP 58
LD + A R VWL+K P +A W+ +Q S ++ ++++DP
Sbjct: 14 LDLSNAGRGVWLVKVPKYIANKWEKAPGNIEVGKLKISKQVGQKAQVSLTLSDAVINIDP 73
Query: 59 LQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDM 118
+ ++ + V+ +L D VP K MEG++ K +
Sbjct: 74 AEEIPRDHRLDVSVVTKQTLGVFSHAVTTTRDDPVPEC-------EKQYMEGRIVQKLEC 126
Query: 119 KPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVH-MRPMPGMVGLISSNSKDKKKA 177
+P+ + Y ++ E K+ RQ++ ++ VH +P+ S+ K +
Sbjct: 127 RPYADHC--YMKMKLESIRKASQPARQVKSLEK--IVHNYKPV--------SDHKHNIED 174
Query: 178 QPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNK 237
+ K+ E K++R D+ + D++F FE+ + +K LV+ T QP +LKEIL E+C YN
Sbjct: 175 RERKKAEGKKSRDDKNAVLDMLFNAFEKHQYYNIKDLVRITRQPISYLKEILKEVCDYNM 234
Query: 238 RGTNQGTYELKPEYK 252
+ ++ +ELK EY+
Sbjct: 235 KNPHKNMWELKKEYR 249
>gi|442759999|gb|JAA72158.1| Putative transcription initiation factor iif small subunit rap30
[Ixodes ricinus]
Length = 254
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 123/258 (47%), Gaps = 28/258 (10%)
Query: 9 GNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM 68
G+ LD A R VWL+K P +A W N+A ++ ++ P ++FT+
Sbjct: 2 GDQDKELDCTNAARGVWLVKVPKYIASRW-NKAPPMSE--AGRLKITKGPNGKTDIRFTL 58
Query: 69 ETTAVSNDSLNR----PKSYSLNMFK-DFVPMSVFS---------ESNQGKVAMEGKVEH 114
V+ + PK + + ++VFS E + GKV +EG V
Sbjct: 59 SDECVNMKDVTEKSTIPKEHRFVISNISNQNLAVFSQNKVVEDGVEHSTGKVCLEGHVVQ 118
Query: 115 KFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDK 174
K + +P + Y +L R+ K+ RQ++ +D + +P+ ++ K
Sbjct: 119 KGECRPM--GDDRYMQLKRQTILKASQPIRQVKQLDRI-VQNYKPV--------ADHKHN 167
Query: 175 KKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCV 234
+ + K+ E K+ R D+ ++ D++F FE+ + +K L + T QP +LKEIL E+C
Sbjct: 168 LEFEQKKKAEGKKAREDKDKVLDMLFSAFEKHQYYNIKDLEKITRQPVPYLKEILKEICN 227
Query: 235 YNKRGTNQGTYELKPEYK 252
YN + ++ +ELKPEY+
Sbjct: 228 YNAKNPHKNMWELKPEYR 245
>gi|313569846|ref|NP_001002127.2| general transcription factor IIF, polypeptide 2a isoform 1 [Danio
rerio]
Length = 265
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 126/266 (47%), Gaps = 38/266 (14%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-- 68
G+ +L AK + VWL+K P +++ W + V K+ +S + +++ + FT+
Sbjct: 5 GEVDLTGAKQNAGVWLVKVPKYLSQQWTKATGRGE---VGKLRISKNQGKAE-VSFTLNE 60
Query: 69 -----ETTAVSNDSLNRPKSYSLNM-FKDFVPMSVFSESNQG----------------KV 106
ET + P+ + + ++VF+E++ G K+
Sbjct: 61 ELTTIETIGEKTSMVRAPREHPFTLQTVGGQTLAVFTENSSGQSDAEASGSGTGSGPDKI 120
Query: 107 AMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGL 166
A+EG V + + +P E Y RL + + + R Q +D + +P+
Sbjct: 121 ALEGVVVQRAECRPAVS--ESYMRLKKLQIEELSKPLRFSQQLDKAVTTNYKPV------ 172
Query: 167 ISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLK 226
+N + K+ E KR R D+ ++ D++F FE+ + +K LV T QP +LK
Sbjct: 173 --ANHAYNLDYEKRKKEEGKRARADKQQVLDMLFSAFEKHQFYNIKDLVDITKQPVIYLK 230
Query: 227 EILNELCVYNKRGTNQGTYELKPEYK 252
EIL ++ +YN +GT++ T+ELKPEY+
Sbjct: 231 EILRDIGIYNVKGTHKNTWELKPEYR 256
>gi|241829140|ref|XP_002414741.1| transcription initiation factor IIF, small subunit, putative
[Ixodes scapularis]
gi|215508953|gb|EEC18406.1| transcription initiation factor IIF, small subunit, putative
[Ixodes scapularis]
Length = 254
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 123/258 (47%), Gaps = 28/258 (10%)
Query: 9 GNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM 68
G+ LD A R VWL+K P +A W N+A ++ ++ P ++FT+
Sbjct: 2 GDQDKELDCTNAARGVWLVKVPKYIASRW-NKAPPMSE--AGRLKITKGPNGKTDIRFTL 58
Query: 69 ETTAVSNDSLNR----PKSYSLNMFK-DFVPMSVFS---------ESNQGKVAMEGKVEH 114
V+ + PK + + ++VFS E + GKV +EG V
Sbjct: 59 SDECVNMKDVTEKSTIPKEHRFVISNISNQNLAVFSQNKVVEDGVEHSTGKVCLEGHVVQ 118
Query: 115 KFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDK 174
K + +P + Y +L R+ K+ RQ++ +D + +P+ ++ K
Sbjct: 119 KGECRPM--GDDRYMQLKRQTILKASQPVRQVKQLDRIVQ-NYKPV--------ADHKHN 167
Query: 175 KKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCV 234
+ + K+ E K+ R D+ ++ D++F FE+ + +K L + T QP +LKEIL E+C
Sbjct: 168 LEFEQKKKAEGKKAREDKDKVLDMLFSAFEKHQYYNIKDLEKITRQPVPYLKEILKEICN 227
Query: 235 YNKRGTNQGTYELKPEYK 252
YN + ++ +ELKPEY+
Sbjct: 228 YNAKNPHKNMWELKPEYR 245
>gi|432931999|ref|XP_004081735.1| PREDICTED: general transcription factor IIF subunit 2-like [Oryzias
latipes]
Length = 253
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 125/246 (50%), Gaps = 21/246 (8%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSD-SMQFTMETTA 72
NL + + VWL+K P +++ W + + V K+ + +++ + E A
Sbjct: 8 NLTGVRQSKGVWLVKVPKYLSQQWDK---ATEKGEVGKITIGKKQGKTEVCFSLSEELAA 64
Query: 73 VS-----NDSLNRPKSYSLNM-FKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNME 126
+ + S+ P+ + M M+VFS+S+ +++EG V H+ + +P+ E
Sbjct: 65 LGSAEEKDASVQVPRDHPFTMQTVGGQTMAVFSQSDTDGISLEGTVVHRAECRPNVS--E 122
Query: 127 EYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVK 186
+Y ++ R ++ +S+ R Q +D +P+ N + +KK K++E K
Sbjct: 123 DYMKIKRLQS-ESVKPQRLSQQLDRAITTVFKPVANH----DFNVEFEKK----KKSEGK 173
Query: 187 RTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYE 246
R +R + D++F FE+ ++ K LV T QP +LKEI+ E+ V N++G ++ ++E
Sbjct: 174 MVRAERQVVMDMLFSAFEKHQYYSFKDLVDITKQPVTYLKEIVREIGVCNRKGAHKSSWE 233
Query: 247 LKPEYK 252
LKPEY+
Sbjct: 234 LKPEYQ 239
>gi|348516620|ref|XP_003445836.1| PREDICTED: general transcription factor IIF subunit 2-like
[Oreochromis niloticus]
Length = 266
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 128/265 (48%), Gaps = 36/265 (13%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSD-SMQFTM- 68
G+ +L AK + VWL+K P +++ W A + V K+ + Q + FT+
Sbjct: 5 GEVDLTGAKQNTGVWLVKVPKYLSQQW---AKATGRGEVGKLRICKKGNQGKPEVSFTLN 61
Query: 69 -ETT---AVSNDSLNRPKSYSLNMFK-DFVPMSVFSESNQG----------------KVA 107
E T + + +++ P+ + M ++VF+E++ K+
Sbjct: 62 EELTVIDGIEDKTVSAPREHPFTMQSVGGQTLAVFTETSSERSDGSSSGSGAGTGPDKIT 121
Query: 108 MEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLI 167
+EG V + + +P E Y RL R + +S R Q +D + +P+
Sbjct: 122 LEGVVVQRAECRP--AVSESYMRLKRLQIEESSKPARLSQQLDKAVTNNYKPV------- 172
Query: 168 SSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKE 227
+N ++ + K+ E KR R D+ ++ D++F FE+ + +K LV T QP +LKE
Sbjct: 173 -ANHDYNREYERKKKEEGKRARADKQQVLDMLFSAFEKHQYYNIKDLVDITKQPVIYLKE 231
Query: 228 ILNELCVYNKRGTNQGTYELKPEYK 252
IL ++ +YN +GT++ T+EL+PEY+
Sbjct: 232 ILRDIGIYNVKGTHKNTWELRPEYR 256
>gi|410912909|ref|XP_003969931.1| PREDICTED: general transcription factor IIF subunit 2-like
[Takifugu rubripes]
Length = 249
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 119/246 (48%), Gaps = 21/246 (8%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSD---SMQFTMET 70
+L AK + VWL+K P +++ W+ + V K+ + Q S E
Sbjct: 7 DLTGAKQNTGVWLVKVPKYLSQQWEKATGRGE---VGKLQICKKGSQGKPEVSFNLNEEL 63
Query: 71 TAVSN---DSLNRPKSYSLNMFK-DFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNME 126
T + +++ P + M ++VF+E+ K+A+EG V + D +P E
Sbjct: 64 TVIEGLEKKTVSAPHEHKFTMQSVGGQILAVFTETTSDKLALEGMVVQRADCRPAVN--E 121
Query: 127 EYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVK 186
Y RL R + +S R Q I N + +P+ +N + + K+ E K
Sbjct: 122 NYMRLKRLQIEESSKPTRLSQQIQNP-VTNYKPV--------ANHSYNLEYEKKKKEEGK 172
Query: 187 RTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYE 246
R R D+ ++ D++F FE+ + +K LV T QP +LKEIL ++ YN +GT++ T+E
Sbjct: 173 RARADKQQVLDMLFSAFEKHQYYNIKDLVDITKQPVIYLKEILRDIGHYNIKGTHKNTWE 232
Query: 247 LKPEYK 252
L+PEY+
Sbjct: 233 LRPEYR 238
>gi|355693889|gb|AER99486.1| proteinral transcription factor IIF, polypeptide 2, 30kDa [Mustela
putorius furo]
Length = 201
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 102/197 (51%), Gaps = 18/197 (9%)
Query: 64 MQFTM-ETTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHK 115
+ FT+ E A +D +P S S FV ++VF+ES+ K+++EG V +
Sbjct: 10 VSFTLNEDLANIHDIGGKPASVSTPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQR 69
Query: 116 FDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKK 175
+ +P E Y RL R + +S R Q +D + +P+ +N +
Sbjct: 70 AECRP--AASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNI 119
Query: 176 KAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVY 235
+ + K+ + KR R D+ + D++F FE+ + LK LV T QP +LKEIL E+ V
Sbjct: 120 EYERKKKEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGVQ 179
Query: 236 NKRGTNQGTYELKPEYK 252
N +GT++ T+ELKPEY+
Sbjct: 180 NVKGTHKNTWELKPEYR 196
>gi|383858211|ref|XP_003704595.1| PREDICTED: general transcription factor IIF subunit 2-like isoform
2 [Megachile rotundata]
Length = 277
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 125/263 (47%), Gaps = 34/263 (12%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAVS 74
LD + A R VWL+K P +A W+ + + V K+ ++ +P Q + + ++
Sbjct: 12 LDLSNAGRGVWLVKVPKYIANKWEKAPGNIE---VGKLKITKNPGQKAEVSLKLSEAVLA 68
Query: 75 NDSLNR---PKSYSLNMF---KDFVPMSVFSESN--------------QGKVAMEGKVEH 114
PK + L++ K + +F + N K+ MEG++
Sbjct: 69 LKEPGEEEIPKQHRLDVTTVTKQMLDALLFHKCNFWLASTSSDSIVPETEKLYMEGRIVQ 128
Query: 115 KFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDK 174
K + +P+ N Y +L + ++ + RQ+Q +D + +P+ S+ K
Sbjct: 129 KLECRPYADNC--YMKLKLQSIKRASVPQRQVQQLDRVVQ-NYKPV--------SDHKHN 177
Query: 175 KKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCV 234
+ K+ E K+ R D+ + D++F FE+ + ++ LV+ T QP +LKEILNE+C
Sbjct: 178 IEYAEKKKAEGKKMRDDKDTVLDMLFAAFEKHQYYNIRDLVKITRQPIVYLKEILNEVCN 237
Query: 235 YNKRGTNQGTYELKPEYKKSVED 257
YN + ++ +ELKPEY+ E+
Sbjct: 238 YNLKNPHRNMWELKPEYRHYKEE 260
>gi|449484507|ref|XP_004175135.1| PREDICTED: LOW QUALITY PROTEIN: general transcription factor IIF
subunit 2 [Taeniopygia guttata]
Length = 307
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 103/197 (52%), Gaps = 18/197 (9%)
Query: 64 MQFTM-ETTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHK 115
+ FT+ E A +D +P S S F+ ++VF+E++ K+A+EG V +
Sbjct: 112 VSFTLNEELASISDIGGKPASVSAPREHPFLLQSVGGQTLTVFTETSVDKLALEGIVVQR 171
Query: 116 FDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKK 175
+ +P Y +L R + +S R Q +D + +P+ +N +
Sbjct: 172 AECRPAASX--NYMKLKRLQIEESSKPVRLSQQLDKAVTTNYKPV--------ANHQYNI 221
Query: 176 KAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVY 235
+ + K+ + KR R D+ ++ D++F FE+ + +K LV T QP +LKEIL E+ +Y
Sbjct: 222 EYEKKKKEDGKRARADKQQVLDMLFSAFEKHQYYNIKDLVDITKQPVIYLKEILREIGIY 281
Query: 236 NKRGTNQGTYELKPEYK 252
N +GT++ T+ELKPEY+
Sbjct: 282 NVKGTHKNTWELKPEYR 298
>gi|198423704|ref|XP_002119394.1| PREDICTED: similar to RAP30 [Ciona intestinalis]
Length = 252
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 117/249 (46%), Gaps = 25/249 (10%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMET 70
G LD + A VWL+K P +A W N + D V K+ ++ + +++ + ++M+
Sbjct: 5 GDKTLDLSGAKHDVWLVKVPKYLATQWLN---APDGMSVGKLRITKNAGRAE-VTYSMDK 60
Query: 71 TAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHEK 123
+S + L FV ++VFS + K AMEG+V K D +P
Sbjct: 61 NLTQANSSEK----FLATDHKFVLQGTCGQSLAVFSTTTGEKRAMEGRVVQKVDCRPIVS 116
Query: 124 NMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQT 183
+ Y +L R + ++ R + + +P+ + I ++ K+K
Sbjct: 117 H--NYMQLKRAQMIEASKPQRTTKQLAEAVKTVYKPVTKIKEQIEYDAMKKEKG------ 168
Query: 184 EVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQG 243
K+ R D+ L+ I+F FE+ + +K L T QP FLKE+L E+ +YNK ++
Sbjct: 169 --KKMRVDKDVLQSILFNAFEKHQYYNIKDLQNITQQPVPFLKEVLREIGMYNKHPGHRH 226
Query: 244 TYELKPEYK 252
+ELKPEY+
Sbjct: 227 MWELKPEYR 235
>gi|47940041|gb|AAH71444.1| General transcription factor IIF, polypeptide 2 [Danio rerio]
Length = 265
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 125/266 (46%), Gaps = 38/266 (14%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-- 68
G+ +L AK + VWL+K P +++ W + V K+ +S + +++ + FT+
Sbjct: 5 GEVDLTGAKQNAGVWLVKVPKYLSQQWTKATGRGE---VGKLRISKNQGKAE-VSFTLNE 60
Query: 69 -----ETTAVSNDSLNRPKSYSLNM-FKDFVPMSVFSESNQG----------------KV 106
ET + P+ + + ++VF+E++ G K+
Sbjct: 61 ELTTIETIGEKTSMVRAPREHPFTLQTVGGQTLAVFTENSSGQSDAEASGSGTGSGPDKI 120
Query: 107 AMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGL 166
A+ G V + + +P E Y RL + + + R Q +D + +P+
Sbjct: 121 ALGGVVVQRAECRPAVS--ESYMRLKKLQIEELSKPLRFSQQLDKAVTTNYKPV------ 172
Query: 167 ISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLK 226
+N + K+ E KR R D+ ++ D++F FE+ + +K LV T QP +LK
Sbjct: 173 --ANHAYNLDYEKRKKEEGKRARADKQQVLDMLFSAFEKHQFYNIKDLVDITKQPVIYLK 230
Query: 227 EILNELCVYNKRGTNQGTYELKPEYK 252
EIL ++ +YN +GT++ T+ELKPEY+
Sbjct: 231 EILRDIGIYNVKGTHKNTWELKPEYR 256
>gi|432851971|ref|XP_004067132.1| PREDICTED: general transcription factor IIF subunit 2-like isoform
1 [Oryzias latipes]
Length = 267
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 130/264 (49%), Gaps = 39/264 (14%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKV-ILSLDPLQSDSMQFTM--ET 70
+L AK + VWL+K P +A+ W A + V K+ I+ L + FT+ E
Sbjct: 8 DLTGAKLNTGVWLVKVPKYLAQQW---AKATGRGEVGKLRIIKKGNLGKPEVSFTLNEEL 64
Query: 71 T---AVSNDSLNRPKSYSLNMFKDFVPM-SVFSESNQG------------------KVAM 108
T + + +++ P+ + M M +VF+ES+ G K+A+
Sbjct: 65 TIIEGIEDKTVSAPRDHPFTMQSVGGQMLAVFTESSSGQSEERSDGSSSGAGSGPDKIAL 124
Query: 109 EGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLIS 168
EG V + + +P E Y +L R + +S +R Q + + +P+
Sbjct: 125 EGVVVQRAECRPAVS--ESYMKLKRLQIEESSKPSRLSQQLSKP-VTNYKPV-------- 173
Query: 169 SNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEI 228
+N + ++ + K+ E KR R D+ ++ +++F FE+ + +K LV T QP +LKEI
Sbjct: 174 ANHEYNREYEKKKKEEGKRARADKQQVLEMLFSAFEKHQYYNIKDLVDITKQPVIYLKEI 233
Query: 229 LNELCVYNKRGTNQGTYELKPEYK 252
L ++ +YN +GT++ T+ELKPEY+
Sbjct: 234 LRDIGIYNVKGTHKNTWELKPEYR 257
>gi|318037396|ref|NP_001187504.1| general transcription factor IIf subunit 2 [Ictalurus punctatus]
gi|308323183|gb|ADO28728.1| general transcription factor IIf subunit 2 [Ictalurus punctatus]
Length = 265
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 126/267 (47%), Gaps = 40/267 (14%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMET 70
G +L AK + VWL+K P +++ W A + V K+ + + +++ + FT+
Sbjct: 5 GDVDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIGKNQGKAE-VSFTLNE 60
Query: 71 TAVSNDSLN---------RPKSYSLNMFKDFVPMSVFSESNQG----------------K 105
+S+ R ++L ++VF+E++ G K
Sbjct: 61 DLTMIESMGEKVSMVRAPREHPFTLQTVGGQT-LAVFTETSSGQSDAEGSSSGTATGPDK 119
Query: 106 VAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVG 165
+A+EG V + + + E Y RL R + +S +R Q +D + +P+
Sbjct: 120 IALEGLVVQRAECRAAAN--EHYMRLKRLQIEESSKPHRFSQQLDKAVTTNYKPV----- 172
Query: 166 LISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFL 225
+N + K+ E KR R DR ++ D++F FE+ + +K LV T QP +L
Sbjct: 173 ---ANHAYNLDYEKKKKEEGKRARADRQQVLDMLFSAFEKHQYYNIKDLVDITKQPVIYL 229
Query: 226 KEILNELCVYNKRGTNQGTYELKPEYK 252
KEIL ++ +YN +GT++ T+ELKPEY+
Sbjct: 230 KEILRDIGIYNVKGTHKNTWELKPEYR 256
>gi|440905270|gb|ELR55673.1| General transcription factor IIF subunit 2, partial [Bos grunniens
mutus]
Length = 227
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 101/197 (51%), Gaps = 18/197 (9%)
Query: 64 MQFTM-ETTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHK 115
+ FT+ E A +D +P S S FV ++VF+ES+ K+++EG V +
Sbjct: 32 VSFTLNEDLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQR 91
Query: 116 FDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKK 175
+ +P E Y RL R + +S R Q +D + +P+ +N +
Sbjct: 92 AECRPAAN--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNI 141
Query: 176 KAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVY 235
+ + K+ + KR R D+ + D++F FE+ + LK LV T QP +LK+IL E+ V
Sbjct: 142 EYERKKKEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVSYLKDILKEIGVQ 201
Query: 236 NKRGTNQGTYELKPEYK 252
N +G ++ T+ELKPEY+
Sbjct: 202 NVKGIHKNTWELKPEYR 218
>gi|321464705|gb|EFX75711.1| hypothetical protein DAPPUDRAFT_306632 [Daphnia pulex]
Length = 272
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 120/252 (47%), Gaps = 28/252 (11%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQ-----------NQASSQDSQPVAKVILS--LDPLQS 61
++ + A R VWL+K P ++ W N Q + K+ILS + LQ
Sbjct: 27 MEMSSASRGVWLVKVPKYISSRWDKCPGNITAGQLNITRVQGQKSQVKLILSEAIMCLQE 86
Query: 62 DSMQFTMETTAVSNDSLNRPKSYSLNMF-KDFVPMSVFSESNQGKVAMEGKVEHKFDMKP 120
+ + + + S +L +F + P + S K+ EGKV K + +P
Sbjct: 87 KGEEPIPKEHGLIVSHIT---SQTLGVFSQQTTPATTNSPMETEKIIFEGKVAQKLECRP 143
Query: 121 HEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPV 180
Y +L R+ K+ R ++ +D + +P+ S+ K K+
Sbjct: 144 TAN--ASYMKLKRDSLIKAAQPTRIVKQLDRVVQSY-KPI--------SDHKHNKEFDEK 192
Query: 181 KQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGT 240
K+ E K+ R D+G++ D++F FE+ + +K LV+ T+QP +LKEIL ++CVYN +
Sbjct: 193 KKAEGKKARDDKGKVMDMLFAAFEKHQYYNIKDLVKLTNQPVTYLKEILKDVCVYNLKNP 252
Query: 241 NQGTYELKPEYK 252
++ +ELKPEY+
Sbjct: 253 HKNMWELKPEYR 264
>gi|226503|prf||1515353A transcription initiation factor RAP30
Length = 234
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 119/240 (49%), Gaps = 22/240 (9%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKASGRGEVGKLRIAKTQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y RL R + +S R Q +D + +P+ +N + + + K+
Sbjct: 121 S--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIEYERKKK 170
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQ 242
+ KR R D+ + D++F FE+ + LK LV T QP +LKEIL E+ V N +G+ +
Sbjct: 171 EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGSTK 230
>gi|346469073|gb|AEO34381.1| hypothetical protein [Amblyomma maculatum]
Length = 255
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 124/259 (47%), Gaps = 29/259 (11%)
Query: 9 GNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDS-MQFT 67
G+ ++D A R VWL+K P +A W ++ ++ ++ S S ++FT
Sbjct: 2 GDQDRDVDCTYAARGVWLVKVPKYIASRWSKAPPMSEA---GRLRITKGGANSKSDIRFT 58
Query: 68 METTAVS----NDSLNRPKSY----------SLNMFKDFVPMSVFSESNQGKVAMEGKVE 113
+ V+ D PK + +L +F + +E + GKV +EG V
Sbjct: 59 LSDECVNMKDPADKSAIPKEHRFVISNIANQNLAVFSQNKVVEDGTEHSSGKVYLEGHVV 118
Query: 114 HKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKD 173
K + +P + Y +L R+ K+ RQ++ +D + +P+ ++ K
Sbjct: 119 QKGECRPM--GDDRYMQLKRQIFVKASQPVRQVKQLDRI-VQNYKPV--------ADHKH 167
Query: 174 KKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELC 233
+ + K+ E K+ R D+ ++ D++F FE+ + +K L + T QP +LKEIL E+C
Sbjct: 168 NLEFEQKKKAEGKKAREDKDKVLDMLFSAFEKHQYYNIKDLEKITRQPVPYLKEILKEIC 227
Query: 234 VYNKRGTNQGTYELKPEYK 252
YN + ++ +ELKPEY+
Sbjct: 228 NYNAKNPHKNMWELKPEYR 246
>gi|154152057|ref|NP_001093809.1| uncharacterized protein LOC511494 [Bos taurus]
gi|151554352|gb|AAI49620.1| LOC511494 protein [Bos taurus]
Length = 257
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 123/248 (49%), Gaps = 24/248 (9%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM--ETT 71
NL+ + ++ +WL+K P +++ W S + V K+ ++ + +S+ + FT+ E T
Sbjct: 16 NLEGIRQNQRMWLVKVPKYLSQQWSEAPGSGE---VGKLKIATNQGKSE-ISFTLNKELT 71
Query: 72 AVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHEKN 124
+ +P S M F+ ++V +E + +++G V H+ + +P
Sbjct: 72 DIRGTD-GQPASVHAPMEHQFLLQTDRGQVLTVLTEHEPDQFSLQGTVVHRGECRPAPS- 129
Query: 125 MEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTE 184
E Y RL R + + R +Q ++ + +P+ +N + + + K+
Sbjct: 130 -ENYMRLKRMQIEGASKPARTVQKLEKVVTTNYKPV--------ANHQYNIEYEKRKKET 180
Query: 185 VKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGT 244
KR + D+ ++ ++F FE+ + +K LV T QP +LKEILNE+ V N +G ++ T
Sbjct: 181 GKRVKADKDQVLTLLFAAFEKHQYYNIKDLVGITMQPVVYLKEILNEIGVRNVKGPHKNT 240
Query: 245 YELKPEYK 252
+ELK EY+
Sbjct: 241 WELKEEYR 248
>gi|225717456|gb|ACO14574.1| Transcription initiation factor IIF subunit beta [Caligus clemensi]
Length = 275
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 122/259 (47%), Gaps = 37/259 (14%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAK------------VILSLDPLQS 61
+L T R VWL+K P ++ W+ + D++ V K V SLD
Sbjct: 12 DLFTENRKRGVWLVKVPKYISDRWEK---APDNEVVGKLRIVKRARAKPDVSFSLDDKIV 68
Query: 62 DSMQFTMETTAVSNDSLNRPKSYSLNMFKDFV-PMSVFSE----SNQG--KVAMEGKVEH 114
+ T E+ +N ++ PK + + + VFS +++G +V++EG+V
Sbjct: 69 AKREGTPESKTSTNQAI--PKQHKFIVSNVMAQTLGVFSRLTSSASEGPDRVSLEGRVVK 126
Query: 115 KFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGV-HMRPMPGMVGLISSNSKD 173
K + +P Y + RE K++ RQ + D V H +P+ I +
Sbjct: 127 KAECRPISDKT--YMSVKREAILKAIEPTRQ--TVQLDRAVNHYKPISNHAANIEHARR- 181
Query: 174 KKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELC 233
K+ E K++R D+ ++ + +F LFE+ + +K LV+ET QP LKE+L +C
Sbjct: 182 -------KKEEGKKSRDDKEKVMERLFALFEKHQYYNIKDLVRETRQPITHLKEVLKGVC 234
Query: 234 VYNKRGTNQGTYELKPEYK 252
YN + ++ +ELKPEY+
Sbjct: 235 NYNLKNPHKNMWELKPEYR 253
>gi|393221663|gb|EJD07148.1| transcription initiation factor IIF, beta subunit [Fomitiporia
mediterranea MF3/22]
Length = 334
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 88/184 (47%), Gaps = 14/184 (7%)
Query: 84 YSLNMFKDFVPMSVF---SESNQGK----VAMEGKVEHKFDMKPHEKNMEEYGRLCRERT 136
Y L+M + V + S QG + G+V+H+ ++P K + Y R R RT
Sbjct: 108 YDLDMVNESVENQIVVAESTPTQGSRVRSTILTGRVKHECSLRP--KLTDAYRRRVRMRT 165
Query: 137 NKSMIKNRQIQVIDNDH----GVHMRPMPGMVGLISSNSK-DKKKAQPVKQTEVKRTRRD 191
+ R +++D G R GM S+ S K K +P K T + R
Sbjct: 166 ITANTPKRSAKIMDEAEAGGVGRMNRLGSGMATPSSAFSNLVKPKPKPAKGTYERFARIP 225
Query: 192 RGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEY 251
R +L D++F L+ +P W+ K L T+QP +LKE+LN + ++ G G YELKP +
Sbjct: 226 RNQLLDMLFALYRERPRWSAKDLRSRTEQPEAYLKEVLNGIADLHRSGEFNGMYELKPNF 285
Query: 252 KKSV 255
+ SV
Sbjct: 286 RDSV 289
>gi|387019065|gb|AFJ51650.1| General transcription factor IIF subunit 2-like [Crotalus
adamanteus]
Length = 262
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 130/265 (49%), Gaps = 39/265 (14%)
Query: 12 KGNLDT--AKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTME 69
KG LD AK + +WL+K P +++ W N+A + V K+ ++ + +++ + FT+
Sbjct: 4 KGELDLTGAKQNTGMWLVKVPKYLSQQW-NKALGRGE--VGKLRIAKNQGRTE-VSFTLN 59
Query: 70 TTAVSNDSLNRPKSYSLNMFKD--FV-------PMSVFSES-------------NQGKVA 107
+ D + K+ S++ +D F+ ++VF+ES N K++
Sbjct: 60 EDLANIDGIG-GKATSISAPRDHPFLLQNVGGQTLTVFTESSGESQTDEKSDSSNNEKLS 118
Query: 108 MEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLI 167
+EG V + + +P E Y +L R + +S +D + +P+ I
Sbjct: 119 LEGIVVQRAECRPAAN--ENYMKLKRLQIEESSKPVSWTMQLDKAVTTNYKPVANHQYNI 176
Query: 168 SSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKE 227
+ K K+ KR R ++ ++ D++F FE+ + +K LV T QP +LKE
Sbjct: 177 EYDKKKKEDG--------KRARAEKQQVLDMLFSAFEKHQYYNIKDLVDITKQPVIYLKE 228
Query: 228 ILNELCVYNKRGTNQGTYELKPEYK 252
IL E+ +YN +G ++ T+ELKPEY+
Sbjct: 229 ILREIGIYNFKGPHKSTWELKPEYR 253
>gi|327283876|ref|XP_003226666.1| PREDICTED: general transcription factor IIF subunit 2-like [Anolis
carolinensis]
Length = 228
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 119/251 (47%), Gaps = 45/251 (17%)
Query: 12 KGNLDT--AKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM- 68
KG LD AK + +WL+K S +NQ ++ S FT+
Sbjct: 4 KGELDLTGAKQNTGMWLVKV------SGRNQGRTEVS-------------------FTLN 38
Query: 69 ETTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPH 121
E A +D +P S S F+ ++VF+ES K+++EG V + + +P
Sbjct: 39 EDLANIDDIGGKPTSISAPREHPFLLQSVGGQTLTVFTESALEKLSLEGIVVQRAECRPA 98
Query: 122 EKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVK 181
E Y +L R + +S ++ + +P+ +N + + + K
Sbjct: 99 AS--ENYMKLKRLQIEESSKPVSWTMQLEKAVTTNYKPV--------ANHQYNIEYEKKK 148
Query: 182 QTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 241
+ + KR R ++ ++ D++F FE+ + +K LV T QP +LKEIL E+ +YN +GT+
Sbjct: 149 KEDGKRARAEKQQVLDMLFSAFEKHQYYNIKDLVDITKQPVSYLKEILREIGIYNVKGTH 208
Query: 242 QGTYELKPEYK 252
+ T+ELKPEY+
Sbjct: 209 KNTWELKPEYR 219
>gi|402225030|gb|EJU05092.1| hypothetical protein DACRYDRAFT_98779 [Dacryopinax sp. DJM-731 SS1]
Length = 332
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 106/254 (41%), Gaps = 18/254 (7%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTME--TTA 72
+D A+ + VW++K P + + W +V + DP + + + T
Sbjct: 43 MDAAEGEEKVWMVKLPKFLMEKWTAIEQEDVVLGTLRVYHAPDPNGNQRLVLRLPEMTDP 102
Query: 73 VSNDSLNRPKSYSLNMFK-----DFVPMSVFSESNQGKVA--MEGKVEHKFDMKPHEKNM 125
D PK YSL M + +FV S E + ++ +EGK+ H P
Sbjct: 103 AVYDITTLPKQYSLKMQRKTVENEFVMASKMKERERNIISTKLEGKIVHDCHAFPIMD-- 160
Query: 126 EEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRP--MPGMVGL-----ISSNSKDKKKAQ 178
Y L R ++ RQ +V++++ G R + G G + +KKA
Sbjct: 161 ASYTSLVASRHREANAPKRQTKVLEDEGGALHRINMLAGGAGENLGTGFGNFVSTEKKAA 220
Query: 179 PVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKR 238
+ R R EL D++F LF NW+++ L T QP +L+E+L E+ ++
Sbjct: 221 VASSAFERAARMPRNELMDLLFPLFRSNDNWSIRDLRNRTRQPEAYLREVLQEIGFLHRT 280
Query: 239 GTNQGTYELKPEYK 252
GT + L P YK
Sbjct: 281 GTFANMWSLLPAYK 294
>gi|320167105|gb|EFW44004.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 332
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 109/241 (45%), Gaps = 23/241 (9%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDS---MQFTMETT 71
++ ++ R VWL+K P A + ++ + + P + + + +E
Sbjct: 104 VEPSRLGRQVWLVKVPEYFANALEHLEDQTHFATLQMPTSAPAPSRFGAPREIGIDIELD 163
Query: 72 AVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKP-HEKNMEEYGR 130
+ L P Y + + + + + FSE G +A EG K D+ P Y
Sbjct: 164 LTDQNDLLLPHQYRMQILPNTLGAAAFSEDESGNLAFEGTAVQKCDVMPVLNDEYRAYLS 223
Query: 131 LCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRR 190
RE K + +Q+ V V + K ++K + V KR R
Sbjct: 224 AKRELEAKPKFETQQVAV---------------VKALYEPEKQREKRRDVD----KRERI 264
Query: 191 DRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPE 250
D+ +L+D + +FER +L+QL Q T+QP +LK++L+ELC YN RG N+ TY+LKPE
Sbjct: 265 DKEQLKDQITAVFERYQFASLQQLQQLTNQPPNYLKQVLSELCDYNTRGANRNTYQLKPE 324
Query: 251 Y 251
+
Sbjct: 325 F 325
>gi|336363992|gb|EGN92358.1| hypothetical protein SERLA73DRAFT_191197 [Serpula lacrymans var.
lacrymans S7.3]
gi|336383070|gb|EGO24219.1| hypothetical protein SERLADRAFT_467154 [Serpula lacrymans var.
lacrymans S7.9]
Length = 361
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 120/294 (40%), Gaps = 71/294 (24%)
Query: 19 KADRSVWLMKCPLVVAKSWQNQASSQDSQ---------------PVAK---VILSLDPLQ 60
K + VWL+K P + + W SS D++ P K ++L L P
Sbjct: 35 KGNGRVWLVKVPKHLMERW----SSIDAENIHLATVRVYPDAVGPTGKSPRIVLFLPPDP 90
Query: 61 SDSMQ-------FTMETTAVSNDSLNRPKSYSLNMFKDFV-------------------- 93
SD+ F+ V + Y L+M D V
Sbjct: 91 SDTTPRDPALPPFSSNAAFVPGEGDVHVDRYELDMVNDDVDNQLVVAERPKEPVPPTSSA 150
Query: 94 PMSVFSESNQGKVA-MEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDND 152
P S +N+ + + G+++H+ +++P E Y R RER+ K RQI++I+ D
Sbjct: 151 PTSTPPVNNRARTTILTGRIKHECNLRPIFN--ESYRRQMRERSRKYNTPRRQIRMIE-D 207
Query: 153 HGVHMRPMPGMVGLISS-------------NSKDKKKAQPVKQTEVKRTRRDRGELEDIM 199
GV G G I+ + K K +P K + R R +L D++
Sbjct: 208 AGVS-----GGRGGINRLSSGVGVGAGGAFSDLIKSKPKPAKGAFERMARMPRNQLLDLL 262
Query: 200 FKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKK 253
F LF QP W++K L + T QP +LKE+L E+ N+ G G +EL + K
Sbjct: 263 FTLFREQPRWSIKPLRERTQQPEAYLKEVLGEIGQLNRSGEYNGMWELSEVFTK 316
>gi|443920503|gb|ELU40411.1| transcription initiation factor IIF, beta subunit domain-containing
protein [Rhizoctonia solani AG-1 IA]
Length = 298
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 111/248 (44%), Gaps = 35/248 (14%)
Query: 20 ADRSVWLMKCPLVVAKSWQN-----------QASSQDSQPVAKVILSLDPLQSDSMQ--- 65
A +VWL+K P V +SW + + PV +++LS DP +S++
Sbjct: 35 ASGTVWLVKVPRTVMESWMRIDKDGEDLGTLRVYHETEPPVIQLLLSNDPSLKESLRGAV 94
Query: 66 FTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNM 125
FT+ TAV RPK NMF V SE+ + M +K +
Sbjct: 95 FTLTPTAV------RPK----NMF-------VISETTPIQTDMRKTA----IIKRPTAIL 133
Query: 126 EEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEV 185
RL K+ RQ+ ID+ + + G L + ++ K+K +P
Sbjct: 134 TVGSRLFNIAFTKANEPRRQLIQIDDGNAQIKKIASGAGHLGNFSNMVKQKPKPAAGQFE 193
Query: 186 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTY 245
+ R + EL D++FKLF Q +W++K L + T QP +LKE L E+ + +K G + T+
Sbjct: 194 RAARIPKNELLDMLFKLFMVQSHWSMKVLRERTKQPLDYLKETLEEIAILHKSGPHTNTW 253
Query: 246 ELKPEYKK 253
L+ Y +
Sbjct: 254 SLQASYAQ 261
>gi|358423064|ref|XP_003585581.1| PREDICTED: general transcription factor IIF subunit 2-like [Bos
taurus]
Length = 257
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 123/247 (49%), Gaps = 22/247 (8%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM--ETT 71
NL+ + ++ +WL+K P +++ W S + V K+ ++ + +S+ + FT+ E T
Sbjct: 16 NLEGIRQNQRMWLVKVPKYLSQQWSEAPGSGE---VGKLKIATNQGKSE-ISFTLNKELT 71
Query: 72 AVSND-----SLNRPKSYSLNMFKD-FVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNM 125
V ++ P + + D ++V +E + +++G V H+ + +P
Sbjct: 72 DVRGTDGQPAPVHAPTEHQFLLQTDRGQVLTVLTEHEPDQFSLQGTVVHRGECRPAPS-- 129
Query: 126 EEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEV 185
E Y RL R + + R +Q ++ + +P+ +N + + + K+
Sbjct: 130 ENYMRLKRMQIEGASKPARTVQKLEKVVTTNYKPV--------ANHQYNIEYEKRKKETG 181
Query: 186 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTY 245
KR + D+ ++ ++F FE+ + +K LV T QP +LKEILNE+ V N +G ++ T+
Sbjct: 182 KRVKADKDQVLTLLFAAFEKHQYYNIKDLVGITMQPVVYLKEILNEIGVRNVKGPHKNTW 241
Query: 246 ELKPEYK 252
ELK EY+
Sbjct: 242 ELKEEYR 248
>gi|296488873|tpg|DAA30986.1| TPA: hypothetical protein LOC511494 [Bos taurus]
gi|440898074|gb|ELR49646.1| hypothetical protein M91_07858 [Bos grunniens mutus]
Length = 257
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 123/247 (49%), Gaps = 22/247 (8%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM--ETT 71
NL+ + ++ +WL+K P +++ W S + V K+ ++ + +S+ + FT+ E T
Sbjct: 16 NLEGIRQNQRMWLVKVPKYLSQQWSEAPGSGE---VGKLKIATNQGKSE-ISFTLNKELT 71
Query: 72 AVSND-----SLNRPKSYSLNMFKD-FVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNM 125
+ ++ P + + D ++V +E + +++G V H+ + +P
Sbjct: 72 DIRGTDGQPAPVHAPTEHQFLLQTDRGQVLTVLTEHEPDQFSLQGTVVHRGECRPAPS-- 129
Query: 126 EEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEV 185
E Y RL R + + R +Q ++ + +P+ +N + + + K+
Sbjct: 130 ENYMRLKRMQIEGASKPARTVQKLEKVVTTNYKPV--------ANHQYNIEYEKRKKETG 181
Query: 186 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTY 245
KR + D+ ++ ++F FE+ + +K LV T QP +LKEILNE+ V N +G ++ T+
Sbjct: 182 KRVKADKDQVLTLLFAAFEKHQYYNIKDLVGITMQPVVYLKEILNEIGVRNVKGPHKNTW 241
Query: 246 ELKPEYK 252
ELK EY+
Sbjct: 242 ELKEEYR 248
>gi|426215262|ref|XP_004001893.1| PREDICTED: general transcription factor IIF subunit 2-like [Ovis
aries]
Length = 257
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 124/247 (50%), Gaps = 22/247 (8%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM--ETT 71
NL+ + ++ +WL+K P +++ W + S + V K+ ++ + +S+ + FT+ E T
Sbjct: 16 NLEGIQQNQRMWLVKVPKYLSQQWSEASGSGE---VGKLKIATNQGKSE-ISFTLNKELT 71
Query: 72 AVSND-----SLNRPKSYSLNMFKD-FVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNM 125
+ ++ P + + D ++V +E + +++G V H+ + +P
Sbjct: 72 DIRGTDGQPAPVHAPTEHQFLLQTDRGQVLTVLTEHAPDQFSLQGTVVHRGECRPAPS-- 129
Query: 126 EEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEV 185
E Y RL R + + R +Q ++ + +P+ +N + + + K+
Sbjct: 130 ENYMRLKRMQIEGASKPARTVQKLEKVVTTNYKPV--------ANHQYNIEYEKRKKETG 181
Query: 186 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTY 245
KR + D+ ++ ++F FE+ + +K LV T QP +LKEILNE+ V N +G ++ T+
Sbjct: 182 KRVKADKDQVLTLLFAAFEKHQYYNIKDLVGITMQPVVYLKEILNEIGVRNVKGPHKNTW 241
Query: 246 ELKPEYK 252
ELK EY+
Sbjct: 242 ELKEEYR 248
>gi|328857693|gb|EGG06808.1| hypothetical protein MELLADRAFT_77731 [Melampsora larici-populina
98AG31]
Length = 356
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 121/268 (45%), Gaps = 40/268 (14%)
Query: 21 DRSVWLMKCPLVVAKSWQNQA-SSQDSQPVAK----------------VILSLDPLQSDS 63
D WL+K P +++ WQ A +S D +A+ ++ L L +
Sbjct: 34 DARTWLVKVPKFLSERWQQHAQASGDGVELARMRVHDQDAAGNRKIEIILPDLPDLPAVP 93
Query: 64 MQFTMET--TAVSN----DSLNRPKSYSLNMFKDFVPMSVFSESNQ--------GKVA-- 107
+T++ A +N D L++P+ + K+ +P S S +NQ KVA
Sbjct: 94 TNYTLDVRNPASTNLYVFDELSKPEVVGTSTVKNEMPAS-GSANNQLNKPRRPRPKVARR 152
Query: 108 --MEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVG 165
+ GK+ H+ + P + Y + R R K+ R I+ ++ D G R G+
Sbjct: 153 PRVTGKIMHECLVSPVIN--DSYRAVMRARQQKASQPKRTIKRVNEDVGTLNRMASGIST 210
Query: 166 LISSN--SKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQ 223
+ +N + + A P ++ K TR R EL D +F F R W++K L +T QP
Sbjct: 211 QVQANKFAAFTRAAGPSTKSTEKFTRMPRTELLDALFAGFLRYEYWSMKSLRDQTKQPEA 270
Query: 224 FLKEILNELCVYNKRGTNQGTYELKPEY 251
+L+E+L+++ K G G + LKP+Y
Sbjct: 271 YLREVLSDIATLLKAGPYVGHWVLKPQY 298
>gi|390598822|gb|EIN08219.1| hypothetical protein PUNSTDRAFT_143873 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 386
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 84/163 (51%), Gaps = 23/163 (14%)
Query: 108 MEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDN----DHGVHMRPMPGM 163
+ G V H+ +++P + Y R + R+ + RQI++ID+ G++
Sbjct: 190 LAGAVRHECNVRPMFTS--SYRRRMKARSVAANTPLRQIRMIDDVISSTDGINK------ 241
Query: 164 VGLISSNSKD--------KKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLV 215
+ ++SS +D K K +P K + R R +L D++F LF +Q W +K L
Sbjct: 242 INMLSSGVQDSSAFRGFVKTKQKPPKGQFERMARMPRNQLLDMLFFLFRQQERWPIKILR 301
Query: 216 QETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDG 258
+ T QP +LKE+L+E+ V + G GT+ELKP ++ EDG
Sbjct: 302 ERTQQPEVYLKEVLSEIAVLTRSGEFSGTWELKPNFR---EDG 341
>gi|402588061|gb|EJW81995.1| hypothetical protein WUBG_07095 [Wuchereria bancrofti]
Length = 271
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 126/279 (45%), Gaps = 45/279 (16%)
Query: 9 GNGK----GNLDTAKADRSVWLMKCPLVVAKSWQ----------------NQASSQDS-- 46
NGK ++DT A R VWL+K P +++ W+ N+ SS DS
Sbjct: 3 SNGKRKFSDHVDTDCAKRGVWLVKVPRYLSEIWEKNVGYDVGRLIYLGYDNEESSSDSFL 62
Query: 47 ------QPVAKVILSLDPLQSDSMQFTM--ETTAVSNDSLNRPKSYSLNMFKDFVPMSVF 98
P + P +S FT+ E + V D N+ + + +D ++
Sbjct: 63 NSLSGSNPSTSRNNRIGPTKSKQTSFTIPNEHSFVIGDIRNQSLAV---LCEDKSGLNED 119
Query: 99 SESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMR 158
++ G++++EG+V + D +P + ++Y R+ ++ KS R ++ ++ V +
Sbjct: 120 ADICSGRLSIEGRVVKRADCRPPQ--TDDYMRMKIKQIEKSSQPKRHVKQMEKAE-VKFK 176
Query: 159 PMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQET 218
P+ ++ + + K E K R D+ + +F FE+ + L L + T
Sbjct: 177 PIAVHAEMLERSRRKK---------EQKTVRADKDVVRQAIFHAFEKHQYYRLVDLQKLT 227
Query: 219 DQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVED 257
QP F+KEIL E+ VYN ++ +ELKPEY+ +D
Sbjct: 228 SQPPGFVKEILTEIAVYNTMPPHKSMWELKPEYRNYRKD 266
>gi|410897211|ref|XP_003962092.1| PREDICTED: general transcription factor IIF subunit 2-like
[Takifugu rubripes]
Length = 252
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 112/247 (45%), Gaps = 18/247 (7%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAV 73
NL AK ++ VWL+K P +++ W+ + + ++ P S + + +
Sbjct: 8 NLTGAKENKCVWLVKVPRYLSQQWERASDKGEVGTISIAKKQGKPEVSFRLSEDLTSLGA 67
Query: 74 SND---SLNRPKSYSLNMF----KDFVPMSVFSESNQG-KVAMEGKVEHKFDMKPHEKNM 125
+ + S P+ + M + + S S N +++EG V H+ + P +
Sbjct: 68 AGEKDASPQVPRDHPFGMHAVGGQTLLTYSQSSTENSSDALSLEGTVVHRAECTPVVND- 126
Query: 126 EEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEV 185
Y +L + + + R Q ++ +P+ I K K++E
Sbjct: 127 -NYMKLKKMQIKECTKCPRLSQQLERAITTVFKPVANHDFNIVYEKK--------KKSEG 177
Query: 186 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTY 245
K R +R + D++F FE+ + +K+LV T QP +LKEIL E+ YN +G ++ T+
Sbjct: 178 KMVRAERQVVLDMLFSAFEKHQYYNIKELVDITKQPVTYLKEILKEIGTYNNKGPHKSTW 237
Query: 246 ELKPEYK 252
ELKPEY+
Sbjct: 238 ELKPEYR 244
>gi|19073998|ref|NP_584604.1| TRANSCRIPTION INITIATION FACTOR TFIIF BETA SUBUNIT [Encephalitozoon
cuniculi GB-M1]
gi|19068640|emb|CAD25108.1| TRANSCRIPTION INITIATION FACTOR TFIIF BETA SUBUNIT [Encephalitozoon
cuniculi GB-M1]
Length = 228
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 113/238 (47%), Gaps = 29/238 (12%)
Query: 24 VWLMKCPLVVAKSWQNQASSQD--------SQPVAKVILSLDPLQSDSMQFTMETTAVSN 75
+WL K PL +A+ Q+ + + +LSL S +F + S
Sbjct: 12 IWLAKVPLFLAERILGQSREAEIGELEITKATSTEPAVLSLRL----SKEFCVGGFPSSF 67
Query: 76 DSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRER 135
D +P+ ++ + + +++ +EG + ++ + P E N EEY R R+
Sbjct: 68 DVKIKPRDNNMYVIR----------THENNADVEGMINNECYITP-EVN-EEYLRYKRDV 115
Query: 136 TNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGEL 195
KS K +QVID G + + ++ +KK K KR R + E+
Sbjct: 116 GFKSDSKKSDVQVIDYLKEGKRGEKFGSLRELEYLARKRKKMLMDK----KRERLGKNEV 171
Query: 196 EDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKK 253
D++FK FE+ P+W +K L QP F++EI++++CV NK+ + TYEL+PEYK+
Sbjct: 172 IDMVFKAFEKYPSWTVKDLADFCGQPVAFIQEIVSDICVLNKKDL-KNTYELRPEYKQ 228
>gi|449329311|gb|AGE95584.1| transcription initiation factor tfIIf beta subunit [Encephalitozoon
cuniculi]
Length = 228
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 113/238 (47%), Gaps = 29/238 (12%)
Query: 24 VWLMKCPLVVAKSWQNQASSQD--------SQPVAKVILSLDPLQSDSMQFTMETTAVSN 75
+WL K PL +A+ Q+ + + +LSL S +F + S
Sbjct: 12 IWLAKVPLFLAERILGQSREAEVGELEITKATSTEPAVLSLRL----SKEFCVGGFPSSF 67
Query: 76 DSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRER 135
D +P+ ++ + + +++ +EG + ++ + P E N EEY R R+
Sbjct: 68 DVKIKPRDNNMYVIR----------THENNADVEGMINNECYITP-EVN-EEYLRYKRDV 115
Query: 136 TNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGEL 195
KS K +QVID G + + ++ +KK K KR R + E+
Sbjct: 116 GFKSDSKKSDVQVIDYLKEGKRGEKFGSLRELEYLARKRKKMLMDK----KRERLGKNEV 171
Query: 196 EDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKK 253
D++FK FE+ P+W +K L QP F++EI++++CV NK+ + TYEL+PEYK+
Sbjct: 172 IDMVFKAFEKYPSWTVKDLADFCGQPVAFIQEIVSDICVLNKKDL-KNTYELRPEYKQ 228
>gi|389750468|gb|EIM91639.1| hypothetical protein STEHIDRAFT_144833 [Stereum hirsutum FP-91666
SS1]
Length = 348
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 78/157 (49%), Gaps = 8/157 (5%)
Query: 108 MEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHM------RPMP 161
M GK++H+ +++P + E Y + +ERT +M +Q++ +D R
Sbjct: 148 MTGKIKHECNLRP--RLSERYRKRVKERTRMAMSPVKQVKYLDEKGMGVGGQGGINRLSS 205
Query: 162 GMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
G+ + K K + VK + R R +L D++F +F + W +K L + QP
Sbjct: 206 GVTSTVGFTDLSKPKQKGVKGQFERMARMPRNQLLDMLFGIFREREFWPIKLLRERLQQP 265
Query: 222 AQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDG 258
+LKEILN++ ++ G + G +ELKP +K S G
Sbjct: 266 EVYLKEILNDIATLHRSGEHNGHWELKPGFKDSALKG 302
>gi|254566865|ref|XP_002490543.1| hypothetical protein [Komagataella pastoris GS115]
gi|238030339|emb|CAY68262.1| hypothetical protein PAS_chr1-4_0679 [Komagataella pastoris GS115]
gi|328350932|emb|CCA37332.1| transcription initiation factor TFIIF beta subunit [Komagataella
pastoris CBS 7435]
Length = 372
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 128/298 (42%), Gaps = 61/298 (20%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQF-TMETTA 72
NLD +AD+ VWL++ P +A W++ + + Q + K+ ++ P + + + +
Sbjct: 41 NLDLEEADKKVWLVRLPKFLADKWKD-PKNLNGQELGKLRITQAPASVNVKERPSPQVQI 99
Query: 73 VSNDSLNR---PKSYSLNMFKDFVPMS-VFSESNQGKVAMEGK-------------VEHK 115
+ NDS P Y +N+ K V +FSE N + E VE +
Sbjct: 100 ILNDSSENKELPLRYDVNIHKRVVDNEYIFSERNLKEYKTEANEIASMPEQPELKPVETE 159
Query: 116 FDMKP--------------------------------HE------KNMEEYGRLCRERTN 137
D +P HE +N Y ++ R N
Sbjct: 160 IDPEPPRGFKRYRDESKSYVSYVKTIPKDTAIVGTVIHECQAIPVRNDRNYSKVVESRKN 219
Query: 138 KSMIKNR-QIQVIDNDHGVHMRPM-PGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGEL 195
+K + ++ ++DN GV + P ++ + NS + + ++ E + R + +L
Sbjct: 220 LRYVKPKSKVTLLDNLPGVIQSNITPNLMR--NKNSTFLRSEKKDRRAEGRAIRMPQNQL 277
Query: 196 EDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKK 253
D++F LF++ W LK L ++T QP +LKE+L + NK+G Y LKPEYKK
Sbjct: 278 LDVLFGLFDQYEYWTLKGLREKTSQPEAYLKEVLESVAELNKKGPYALRYSLKPEYKK 335
>gi|50556122|ref|XP_505469.1| YALI0F15785p [Yarrowia lipolytica]
gi|49651339|emb|CAG78278.1| YALI0F15785p [Yarrowia lipolytica CLIB122]
Length = 366
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 127/305 (41%), Gaps = 66/305 (21%)
Query: 10 NGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTME 69
+G +LDTA + VWL++ P + W + ++ + +V++ + + + ++
Sbjct: 54 DGSFDLDTAGLENRVWLVRLPKFLVDKW-SHLDEHTNKRLGQVLIKENTAPGEKQKVSLR 112
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV------------------------------------ 93
+ +S P Y L++ K+ V
Sbjct: 113 LSDTPENS-EIPHEYELDIVKEVVNNTFVFTEKEQKKEKEKEKEEAGSSGAGSSSSAASS 171
Query: 94 -------PMSV-FSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQ 145
P + F+ + K A+ G+V H+ + P K+ Y ++ ++R +
Sbjct: 172 SAGKVSKPSAFPFARTIPKKTALAGRVIHECTVVPSLKDAN-YKKVIQKRKERLQQPPAA 230
Query: 146 IQVIDNDHGVHMRPMPGMVGLISSNSKDKK---------KAQPVK-QTEVKRTRRDRGEL 195
+ ND +PG+V SSN+ + + KAQ + + K R +R L
Sbjct: 231 RVTLLND-------LPGVVA--SSNAPNLRGTGSQSHFMKAQKKDIKLDGKAVRIERSAL 281
Query: 196 EDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSV 255
DI+FKLFE P W+LK L + T QP +L+E+L+ + V NK G Y L+ EYK+
Sbjct: 282 LDILFKLFEEYPYWSLKGLKERTKQPEVYLREVLDSMAVLNKSGPYAMKYSLQQEYKQLS 341
Query: 256 EDGGA 260
GA
Sbjct: 342 NSAGA 346
>gi|339236175|ref|XP_003379642.1| general transcription factor IIF subunit 2 [Trichinella spiralis]
gi|316977683|gb|EFV60754.1| general transcription factor IIF subunit 2 [Trichinella spiralis]
Length = 192
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 94/192 (48%), Gaps = 40/192 (20%)
Query: 92 FVPMSVFSESNQGKVAMEGKVEHKF-----------DMKPHEKNMEEY------GRL--- 131
FVP S S++G +E H+F MK H + E+ GR+
Sbjct: 7 FVP----SSSDEGNTPLE----HRFITSGFSNQTLLPMKTHAEESNEFKKFVLLGRVVQK 58
Query: 132 --CRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKK----AQPVKQTEV 185
CR +N + +K + I++ V +P ++ + + K K A+P K+ E
Sbjct: 59 AECRPPSNDAYMKMK----INHIEAVS-KPQNKVITINRAEVKFKPSSVPTAEPSKKAE- 112
Query: 186 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTY 245
K R R EL D +F FE+ P++ L LV+ T QP FLK++L+E+ YN + N+ T+
Sbjct: 113 KSVRLSREELRDALFLAFEKNPHYKLVDLVRMTQQPPNFLKDVLSEIACYNTQHPNRYTW 172
Query: 246 ELKPEYKKSVED 257
ELKPEY+ +D
Sbjct: 173 ELKPEYRLYSDD 184
>gi|302666417|ref|XP_003024808.1| hypothetical protein TRV_01024 [Trichophyton verrucosum HKI 0517]
gi|291188880|gb|EFE44197.1| hypothetical protein TRV_01024 [Trichophyton verrucosum HKI 0517]
Length = 402
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 115/265 (43%), Gaps = 32/265 (12%)
Query: 13 GNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDP--LQSDSMQFTMET 70
G+LD A ++VWL + P + + W ++ Q + V + DP ++ ++ FT +
Sbjct: 96 GDLDFTNAFQNVWLTRIPRNLWEQWSKLDDDEEIQ-IGTVRVEGDPTDIKRNTFVFTEKD 154
Query: 71 TAVSNDSLNR--------PKSY-------------SLNMFKDFVPMSVFSESNQGKVAME 109
D +NR +SY ++ +V +V ++ A+
Sbjct: 155 LPGYKDKMNRFYNENQPYGRSYLYEQTKRDAKKKERKKKWEPYVRKTVPRQT-----AIT 209
Query: 110 GKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISS 169
+V +F+ P E EEY RL ER +S+ R+ + I+ G ++P + S
Sbjct: 210 ARVHDEFNCLPVEN--EEYQRLAEERALESLKPKRETKFIEKVPGKMLQPK-TVAAADKS 266
Query: 170 NSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEIL 229
N K V+ E K R + EL D+++ F R W K L E QP +LK+ L
Sbjct: 267 NFIQIAKPAKVRAQENKTARMPQNELLDLIYACFRRHKYWPFKALKAELQQPEVYLKQTL 326
Query: 230 NELCVYNKRGTNQGTYELKPEYKKS 254
+ K G T+ELKPE ++S
Sbjct: 327 EIVAHLVKSGDFAMTWELKPEARES 351
>gi|351715101|gb|EHB18020.1| General transcription factor IIF subunit 2 [Heterocephalus glaber]
Length = 271
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 95/199 (47%), Gaps = 20/199 (10%)
Query: 64 MQFTM-ETTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQ--GKVAMEGKVE 113
+ FT+ E A +D +P S S FV ++VF+ES+ ++ EG V
Sbjct: 74 VSFTLNEDLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSVVQRLNAEGIVV 133
Query: 114 HKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKD 173
+ + +P E Y RL R + +S R Q +D + +P+ I K
Sbjct: 134 QRAECRPAAS--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKK 191
Query: 174 KKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELC 233
K+ KR R D+ + D++F FE+ + LK LV T QP +LKEIL E+
Sbjct: 192 KEDG--------KRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIG 243
Query: 234 VYNKRGTNQGTYELKPEYK 252
+ N +G ++ T+ELKPEY+
Sbjct: 244 IQNVKGIHKNTWELKPEYR 262
>gi|392595271|gb|EIW84595.1| hypothetical protein CONPUDRAFT_142809 [Coniophora puteana
RWD-64-598 SS2]
Length = 351
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 78/153 (50%), Gaps = 13/153 (8%)
Query: 108 MEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLI 167
+ G++ H+ ++P + Y + RERT RQI++I+ + GV R G + +
Sbjct: 164 VTGRIRHECSLRPIFN--DSYRKHMRERTRVYNTPQRQIRMIE-EAGV--RGGRGGINQL 218
Query: 168 SSNSKD--------KKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETD 219
SS + K K +P K + R R +L D++F LF QP W +K L + T
Sbjct: 219 SSGVNNSGSFSDLVKSKNRPPKGAFERMARMPRNQLLDMLFSLFREQPRWPIKGLRERTQ 278
Query: 220 QPAQFLKEILNELCVYNKRGTNQGTYELKPEYK 252
QP +LKEILNE+ ++ G + G +EL +K
Sbjct: 279 QPEVYLKEILNEIASLHRSGEHNGLWELSEVFK 311
>gi|170096937|ref|XP_001879688.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645091|gb|EDR09339.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 351
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 92/186 (49%), Gaps = 23/186 (12%)
Query: 80 RPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKS 139
RPK SL++ +V S + + G+++H+ +++P + Y + +ER K
Sbjct: 140 RPKDPSLSVSTSAAAATVNSRART--TVLTGRIKHECNLRP--AFSQTYRKQMKERHKKY 195
Query: 140 MIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSK-----------DKKKAQP--VKQTEVK 186
RQI++I+ D GV PG G ++ S D K +P K T +
Sbjct: 196 NTPVRQIRMIE-DAGV-----PGGRGGVNRLSSGVGVGAGAAFGDLIKVKPKQPKGTFER 249
Query: 187 RTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYE 246
R R +L D +F LF P+W ++ L ++T QP +LKE+L+E+ ++ G + G +E
Sbjct: 250 MARMPRNQLLDQIFSLFRETPHWGIRPLREKTQQPEAYLKEVLSEVAFLHRSGEHSGFFE 309
Query: 247 LKPEYK 252
LK YK
Sbjct: 310 LKENYK 315
>gi|302679342|ref|XP_003029353.1| hypothetical protein SCHCODRAFT_78184 [Schizophyllum commune H4-8]
gi|300103043|gb|EFI94450.1| hypothetical protein SCHCODRAFT_78184 [Schizophyllum commune H4-8]
Length = 364
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 88/186 (47%), Gaps = 11/186 (5%)
Query: 80 RPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKS 139
RPK S + P S + + G+++H+ M+P +Y R R+
Sbjct: 145 RPKDASFGLSGSSQPSQPNSRAR--TTILTGRLKHECTMRPAFN--AKYRNQMRMRSMYH 200
Query: 140 MIKNRQIQVIDN---DHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKR-TRRDRGEL 195
R + ID D G R G S + D + +P + + +R R R EL
Sbjct: 201 NAPRRATKHIDESGLDKGAVSRLNTGGSLGGPSGAFDFGRPKPKAKGQFERMARMPRNEL 260
Query: 196 EDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSV 255
D++F LF+ QP WALK L + T QP +LKE+LN++ ++ G + G++ELK + S
Sbjct: 261 LDMLFNLFKEQPYWALKPLRERTQQPEAYLKEVLNDVATLHRSGEHNGSWELKALFAGS- 319
Query: 256 EDGGAD 261
GGA+
Sbjct: 320 --GGAE 323
>gi|409081467|gb|EKM81826.1| hypothetical protein AGABI1DRAFT_112060 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 369
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 96/208 (46%), Gaps = 27/208 (12%)
Query: 60 QSDSMQFTMETTAVSNDSL--NRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFD 117
+ D + M AV N + RPK SL++ P + S + G+++H+ +
Sbjct: 133 EPDCYELDMVNEAVENQIVVAERPKDSSLSVHGTNTPFN----SRARTTILTGRIKHECN 188
Query: 118 MKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKD---- 173
++P E Y + RER K+ K RQI++I+ D GV G G I+ S
Sbjct: 189 LRP--SFTENYRKQMRERHIKANTKQRQIRMIE-DAGVS-----GGRGGINRLSSGVGVG 240
Query: 174 ---------KKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQF 224
K + +P K + R R +L D +F F P+W L+ L +T QP +
Sbjct: 241 SGGAFRDLIKTRQKPAKGGFERMARIPRNQLLDQLFSHFRDTPHWGLRPLRDKTQQPEAY 300
Query: 225 LKEILNELCVYNKRGTNQGTYELKPEYK 252
LK++L+E+ ++ G G +ELK +K
Sbjct: 301 LKDVLSEIAFLHRSGEFNGMWELKENFK 328
>gi|426196707|gb|EKV46635.1| hypothetical protein AGABI2DRAFT_193303 [Agaricus bisporus var.
bisporus H97]
Length = 369
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 96/208 (46%), Gaps = 27/208 (12%)
Query: 60 QSDSMQFTMETTAVSNDSL--NRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFD 117
+ D + M AV N + RPK SL++ P + S + G+++H+ +
Sbjct: 133 EPDCYELDMVNEAVENQIVVAERPKDSSLSVHGTNTPFN----SRARTTILTGRIKHECN 188
Query: 118 MKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKD---- 173
++P E Y + RER K+ K RQI++I+ D GV G G I+ S
Sbjct: 189 LRP--SFTENYRKQMRERHIKANTKQRQIRMIE-DAGVS-----GGRGGINRLSSGVGVG 240
Query: 174 ---------KKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQF 224
K + +P K + R R +L D +F F P+W L+ L +T QP +
Sbjct: 241 SGGAFRDLIKTRQKPAKGGFERMARIPRNQLLDQLFSHFRDTPHWGLRPLRDKTQQPEAY 300
Query: 225 LKEILNELCVYNKRGTNQGTYELKPEYK 252
LK++L+E+ ++ G G +ELK +K
Sbjct: 301 LKDVLSEIAFLHRSGEFNGMWELKENFK 328
>gi|388853672|emb|CCF52640.1| related to TFG2-TFIIF subunit (transcription initiation factor), 54
kD [Ustilago hordei]
Length = 445
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 10/121 (8%)
Query: 144 RQIQVIDN-DHGVHMRPMPGMVGLISSNSKDKKKA----QPVKQTEV-----KRTRRDRG 193
R I+++D+ D G H + G+ G +S++ K + A +P K + K R +
Sbjct: 264 RTIKMLDSTDTGRHNMLVAGVGGGLSNSQKSRFNAAISSKPTKNSGGAGGGEKFARMPKN 323
Query: 194 ELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKK 253
EL D++F LFER W+LK+L ET QP +L+E+L + +KRG G + LKPEY
Sbjct: 324 ELLDMLFALFERWQYWSLKKLRAETQQPESYLREVLTGIADLHKRGPYVGNWSLKPEYSS 383
Query: 254 S 254
+
Sbjct: 384 A 384
>gi|396080925|gb|AFN82545.1| transcription initiation factor TFIIF subunit beta [Encephalitozoon
romaleae SJ-2008]
Length = 228
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 119/246 (48%), Gaps = 27/246 (10%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAVS 74
L+ + +WL K PL +A+ + S++ + V + D + T AV
Sbjct: 3 LNINNKNTKIWLAKVPLFLAE----RILSRNEETVVG--------ELDITKATPTEPAVL 50
Query: 75 NDSLNR-------PKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEE 127
N L++ P S+ + + M V ++++ +EG + ++ + P E N EE
Sbjct: 51 NLKLSKEFCEGGFPSSFDVKIKARDNNMYVV-KAHENNADVEGMINNECYITP-EIN-EE 107
Query: 128 YGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKR 187
Y + ++ KS K +QVID G + + ++ +KK K KR
Sbjct: 108 YLKYKKDAGFKSSAKKGDVQVIDYLKEGKRGEKFGSLRELEYLARKRKKMLMDK----KR 163
Query: 188 TRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYEL 247
R + E+ D++FK FE+ P+W +K L QP F++EI++++CV NK+ + TYEL
Sbjct: 164 ERLGKNEVIDMVFKAFEKYPSWTVKDLADFCGQPVAFIQEIVSDICVLNKKDL-KNTYEL 222
Query: 248 KPEYKK 253
+PEYK+
Sbjct: 223 RPEYKQ 228
>gi|343429875|emb|CBQ73447.1| related to TFG2-TFIIF subunit (transcription initiation factor), 54
kD [Sporisorium reilianum SRZ2]
Length = 424
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 78/165 (47%), Gaps = 18/165 (10%)
Query: 105 KVAMEGKVEHKFDMKPHEKNM----------EEYGRLCRERTNKSMIKNRQIQVIDN-DH 153
+ A++ ++ D+KP + + Y L R+R ++ R I+++D+ D
Sbjct: 205 EAALQPQIRSAADVKPGSSSSMGLGGAAPISDSYRELLRKRREEASKPKRTIKMLDSTDA 264
Query: 154 GVHMRPMPGM-VGLISSNSKDKKKAQPVKQTEV------KRTRRDRGELEDIMFKLFERQ 206
G H + G+ GL +S A K K R + EL D++F LFER
Sbjct: 265 GRHNMLVAGVGAGLANSQKSRFNAAISAKPKSAAAGGGEKFARMPKNELLDLLFTLFERW 324
Query: 207 PNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEY 251
W+LK+L ET QP +L+E L + +KRG G + LKPEY
Sbjct: 325 QYWSLKRLRSETQQPESYLRETLTGIADLHKRGPYVGNWSLKPEY 369
>gi|410927374|ref|XP_003977124.1| PREDICTED: general transcription factor IIF subunit 2-like
[Takifugu rubripes]
Length = 206
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 79/161 (49%), Gaps = 21/161 (13%)
Query: 95 MSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQV---IDN 151
+ VFSE N + GKV + D P +EY RL R KS K + +Q+ I N
Sbjct: 59 LGVFSE-NSDDIDYLGKVLVRADCTP--AYFDEYLRLKRLEKKKSPQKAKMLQIQSPIAN 115
Query: 152 DHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWAL 211
V P + +DK+K + T D+ + D++F FE+ +
Sbjct: 116 YKPVSKHPY---------HREDKRKVG------AQYTSMDKKLVMDLLFSAFEKHQYCNI 160
Query: 212 KQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK 252
KQLV T QP +LK IL E+ VYN GT++ T+EL+PEY+
Sbjct: 161 KQLVDMTKQPVVYLKSILREIGVYNVTGTHKYTWELRPEYR 201
>gi|303388395|ref|XP_003072432.1| transcription initiation factor TFIIF subunit beta [Encephalitozoon
intestinalis ATCC 50506]
gi|303301572|gb|ADM11072.1| transcription initiation factor TFIIF subunit beta [Encephalitozoon
intestinalis ATCC 50506]
Length = 227
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 110/255 (43%), Gaps = 47/255 (18%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAVS 74
L+T + +WL K PL +A+ ILSL + T+ ++
Sbjct: 3 LNTNNKNTKIWLAKVPLFLAER----------------ILSL------GGETTIGELDIT 40
Query: 75 NDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVA-----------------MEGKVEHKFD 117
+ P SL + K+F F S + KV +EG + ++
Sbjct: 41 KATSTEPAVLSLKLSKEFCEGG-FPSSFEVKVKPRDNSMYVIRAYENNADVEGVINNECY 99
Query: 118 MKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKA 177
+ P EY R +E KS K +QVID G + + ++ +KK
Sbjct: 100 ITPEING--EYLRYKKEAGFKSDAKKSDVQVIDYLKEGKRGEKFGSLRELEYLARKRKKM 157
Query: 178 QPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNK 237
K KR R + E+ D++FK FE+ P+W +K L QP F++EI++++CV NK
Sbjct: 158 LMDK----KRERLGKNEVIDMVFKAFEKYPSWTVKDLADFCGQPVAFIQEIVSDICVLNK 213
Query: 238 RGTNQGTYELKPEYK 252
+ + YEL+PEY+
Sbjct: 214 KDL-KNAYELRPEYR 227
>gi|401825424|ref|XP_003886807.1| transcription initiation factor IIF small subunit [Encephalitozoon
hellem ATCC 50504]
gi|392997963|gb|AFM97826.1| transcription initiation factor IIF small subunit [Encephalitozoon
hellem ATCC 50504]
Length = 228
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 118/246 (47%), Gaps = 27/246 (10%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAVS 74
L+ + +WL K PL +A+ + SQ+ + V + + + T AV
Sbjct: 3 LNINNRNTKIWLAKVPLFLAE----RILSQNGETVVG--------ELEITKATPTEPAVL 50
Query: 75 NDSLNR-------PKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEE 127
N L++ P S+ + + M V +++ +EG + ++ + P E N EE
Sbjct: 51 NLKLSKEFCEGGFPSSFEVKIKARDNNMYVVR-AHENSADVEGMINNECYITP-EIN-EE 107
Query: 128 YGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKR 187
Y + ++ KS K +QVID G + + ++ +KK K KR
Sbjct: 108 YLKYKKDAGFKSDTKKGDVQVIDYLKEGKRGEKFGSLRELEYLARKRKKMLMDK----KR 163
Query: 188 TRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYEL 247
R + E+ D++FK FE+ P+W +K L QP F++EI++++CV NK+ + TYEL
Sbjct: 164 ERLGKNEVIDMVFKAFEKYPSWTVKDLADFCGQPVAFIQEIVSDICVLNKKDL-KNTYEL 222
Query: 248 KPEYKK 253
+PEYK+
Sbjct: 223 RPEYKQ 228
>gi|313245840|emb|CBY34829.1| unnamed protein product [Oikopleura dioica]
Length = 259
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 61/113 (53%), Gaps = 12/113 (10%)
Query: 140 MIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIM 199
M + R +Q+ + H++P+ G+ +K+ Q K E KRTR D +L +
Sbjct: 156 MQRKRAVQLTEVPQ--HIKPVNGIT---------RKEIQEAKGNE-KRTRMDDNQLTSRL 203
Query: 200 FKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK 252
+LFE+ + LK L T QP FLKE L E+ VYN R T + +ELKPEY+
Sbjct: 204 LELFEKHQYYTLKDLCDITKQPTAFLKEKLKEIAVYNSRATQRNMWELKPEYR 256
>gi|385304830|gb|EIF48833.1| transcription initiation factor tfiif middle subunit [Dekkera
bruxellensis AWRI1499]
Length = 375
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 7/172 (4%)
Query: 89 FKDFVPMSVFSESNQGKVAMEGKVEHKFDMKP-HEKNMEEYGRLCRERTNKSMIKNRQIQ 147
FK FVP ++++ K M GKV H+ + P + ++R +M+K + I
Sbjct: 182 FKRFVP---YAKTIPKKTKMVGKVVHECQVIPTKLXXNNKLKLAAQKRFLXNMVKRKHIN 238
Query: 148 VIDN-DHGV-HMRPMPGM-VGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFE 204
+ N D G+ + P + G + S++ + +TE + +R D+ L ++F+LF+
Sbjct: 239 YLKNVDTGILQGKAGPNIHTGSTITLSRELAAKREAAKTEGRASRMDKKALMKVLFELFD 298
Query: 205 RQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE 256
+ W +K L ++T+QP +LKE L + V +RG Y L+ EYKKS E
Sbjct: 299 KYDYWTMKGLKEKTNQPEVYLKECLENIAVMERRGPYALKYRLRDEYKKSRE 350
>gi|313225075|emb|CBY20868.1| unnamed protein product [Oikopleura dioica]
Length = 259
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 61/113 (53%), Gaps = 12/113 (10%)
Query: 140 MIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIM 199
M + R +Q+ + H++P+ G+ +K+ Q K E KRTR D +L +
Sbjct: 156 MQRKRAVQLTEVPQ--HIKPVNGIT---------RKEIQEAKGNE-KRTRMDDNQLTSRL 203
Query: 200 FKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK 252
+LFE+ + LK L T QP FLKE L E+ VYN R T + +ELKPEY+
Sbjct: 204 LELFEKHQYYTLKDLCDITKQPTAFLKEKLKEIAVYNSRATQRNMWELKPEYR 256
>gi|429966047|gb|ELA48044.1| hypothetical protein VCUG_00467 [Vavraia culicis 'floridensis']
Length = 270
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 111/254 (43%), Gaps = 49/254 (19%)
Query: 15 LDTAKADRSVWLMKCPLVVAK-----------SWQNQASSQDSQPVAKVILSLDPLQSDS 63
LDT + SVWL K P ++K + N +++ P A+V + + L
Sbjct: 47 LDTKTKEVSVWLAKLPPFLSKKLLSFNSDTEIGYLNISTATSDAP-AQVSIGIT-LSDVP 104
Query: 64 MQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESN--QGKVAMEGKVEHKFDMKPH 121
+ FT+ +S PM V ++ +GKV E V FD
Sbjct: 105 LNFTIRFNEISQ------------------PMYVLKGNDRIEGKVVKEVFVNPVFDNAYL 146
Query: 122 E-KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPV 180
E K MEE + T Q+ID G V + S ++ +KK
Sbjct: 147 EFKKMEEVSAAAQPST----------QIIDYMKEGRKTDRFGTVSELESLARRRKK---- 192
Query: 181 KQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGT 240
+ KR R +R E+ D++FK FE+ +W K L + QP +++EIL E+ V NK+
Sbjct: 193 QLQSQKRERLERNEVMDMVFKAFEKFDSWTAKDLADFSGQPVAYIQEILGEIAVLNKKD- 251
Query: 241 NQGTYELKPEYKKS 254
++ +Y LKPEYK++
Sbjct: 252 HRNSYSLKPEYKEA 265
>gi|392564191|gb|EIW57369.1| hypothetical protein TRAVEDRAFT_72488 [Trametes versicolor
FP-101664 SS1]
Length = 366
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 66/121 (54%), Gaps = 11/121 (9%)
Query: 133 RERTNKSMIKNRQIQVIDNDHGVHMRP--MPGMVGLISSNSKDKKKAQPVKQTEVKRTRR 190
R RT + I RQI++ + G +RP MP + +D K P K+T +R R
Sbjct: 216 RARTVAAAIPQRQIKIYEPKPG-EVRPECMPRV------RPRDAK--APRKRTANRRVRA 266
Query: 191 DRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPE 250
D+ EL D++F+LF +P W+ K L ++T QP +LK++L E+ ++ G + +EL
Sbjct: 267 DKAELLDMLFQLFVDRPQWSFKDLQEKTRQPEAYLKKVLPEIAFLHRGGLHYNYWELSAN 326
Query: 251 Y 251
Y
Sbjct: 327 Y 327
>gi|291001011|ref|XP_002683072.1| transcription initiation factor IIF, beta subunit [Naegleria
gruberi]
gi|284096701|gb|EFC50328.1| transcription initiation factor IIF, beta subunit [Naegleria
gruberi]
Length = 300
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/269 (23%), Positives = 115/269 (42%), Gaps = 47/269 (17%)
Query: 13 GNLDTAKADRS-VWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETT 71
G +D ++AD+ +WL+K P + + +D + + VI+ + + + ++
Sbjct: 29 GIVDASQADKQQIWLVKIPDFI-----DLDKYKDEETIGSVIIEKNTTSNSEAKCSLHIE 83
Query: 72 AVSNDSLNRPKSYSLNMFKDFVPMSVFSES----------------------------NQ 103
+ + L M K PM VF + +
Sbjct: 84 PPAGGEALTVSDFDLIMNKKKTPMYVFGMTKLTEEETQERERLRQRKKSEPLLELKYIDD 143
Query: 104 GKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQ-IQVIDNDHGVHMRPMPG 162
K+ + G ++ + K + YG+L + R +S K ++ +QV ++ +
Sbjct: 144 TKINIAGHIDQSCNAVV--KFGQAYGQLSKNRVLQSNQKEKKAVQVAES------QSTKK 195
Query: 163 MVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPA 222
V L+ + KK P R R D +++ +F L++ + W +++L TDQP
Sbjct: 196 SVNLLDAYRDGKKDDTPRDN----RVREDGEKIKAKIFSLYKERQYWKMEELANITDQPT 251
Query: 223 QFLKEILNELCVYNKRGTNQGTYELKPEY 251
Q +K IL+ +CVYNK G +G Y+LKPEY
Sbjct: 252 QHVKTILSSICVYNKSGEYKGYYQLKPEY 280
>gi|358372641|dbj|GAA89243.1| transcription initiation factor IIF subunit beta [Aspergillus
kawachii IFO 4308]
Length = 383
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/295 (23%), Positives = 124/295 (42%), Gaps = 57/295 (19%)
Query: 13 GNLDTAKADRSVWLMKCPLVVAKSWQNQASSQ--DSQPVAKVILSLDPLQSDSMQFTMET 70
G+LD + A++SVWL + P + + W + ++S D + + + ++ Q+D + ++
Sbjct: 46 GDLDFSAANQSVWLSRLPRSLWEHWAHLSNSAGDDDEEIQIGTMRIEGTQNDLKRVSLRI 105
Query: 71 TAVSNDSLNRPKSYSLN-----------------MFKDF-VP-----MSVFSESNQG--- 104
A D+ + PK Y L +F + +P M VF E+
Sbjct: 106 NA-REDNRDIPKDYLLQRQTITSENVSHLTQNTYLFTERDLPGHENRMVVFGEARSALYE 164
Query: 105 -------------------------KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKS 139
+ A+ G V +F+ P E EE+ RL ++ ++
Sbjct: 165 SMKREMKKKERKKKWEPYVRKTVPKQTALVGSVSEEFNCLPVEN--EEFRRLSEKKALEA 222
Query: 140 MIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIM 199
+ R+ ID G ++P + G + + + A+P K E K TR + EL D++
Sbjct: 223 LKPKRETVFIDKIPGKMLQPRNALPGEKGAFVQATRPAKP-KAQENKTTRMPQNELLDLI 281
Query: 200 FKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKS 254
++ F W K L QP +LK+ L + K G T+ELKPE ++S
Sbjct: 282 YQCFREYKYWPFKNLKARLRQPEAYLKQTLEMVAHLVKAGDFAMTWELKPEARES 336
>gi|324518109|gb|ADY47006.1| General transcription factor IIF subunit 2 [Ascaris suum]
Length = 297
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 12/172 (6%)
Query: 82 KSYSLNMF-KDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSM 140
KS SLN+ +D ++ +E G++A EG+V + D +P + +Y + + KS
Sbjct: 126 KSQSLNVLSEDKTGLNEDAEICSGRLAFEGRVIKRADCRPPQ--TVDYLHMKINQIEKSS 183
Query: 141 IKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMF 200
I RQ++ ID V +P+ ++ + K+ A+ V R D+ + +F
Sbjct: 184 IPKRQLKQIDKAE-VKFKPVAIHTETLARERQKKEGAKTV--------RGDKDVVRQAIF 234
Query: 201 KLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK 252
FE+ + L L + T+QP F+KEIL E+ +YN ++ +ELKPEY+
Sbjct: 235 HAFEKHQYYRLIDLQKLTNQPPGFVKEILTEIAMYNTTPPHKSMWELKPEYR 286
>gi|345315416|ref|XP_001520962.2| PREDICTED: general transcription factor IIF subunit 2-like, partial
[Ornithorhynchus anatinus]
Length = 85
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 50/72 (69%)
Query: 181 KQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGT 240
K+ + KR R D+ ++ D++F FE+ + +K LV T QP +LKEIL E+ ++N +GT
Sbjct: 7 KKEDGKRARADKQQVLDMLFSAFEKHQYYNIKDLVDITKQPVVYLKEILREIGIHNVKGT 66
Query: 241 NQGTYELKPEYK 252
++ T+ELKPEY+
Sbjct: 67 HKNTWELKPEYR 78
>gi|639703|gb|AAA61642.1| transcription initiation factor TFIIF middle subunit [Saccharomyces
cerevisiae]
Length = 400
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 78/154 (50%), Gaps = 4/154 (2%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQ-IQVIDNDHGVHMRPMPGM 163
K A+ G V H+ + P N Y ++ +R N + N++ I +D GV M GM
Sbjct: 211 KTAIVGTVCHECQVMPS-MNDPHYHKIVEQRRNIVKLNNKERITTLDETVGVTM-SHTGM 268
Query: 164 VGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQ 223
+ S NS K + ++ +K R + E+ D +FKLF+ W+LK L + T QP
Sbjct: 269 -SMRSDNSNFLKVGREKAKSNIKSIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQPEA 327
Query: 224 FLKEILNELCVYNKRGTNQGTYELKPEYKKSVED 257
LKE L+++ K+G Y L+PEYKK E+
Sbjct: 328 HLKECLDKVATLVKKGPYAFKYTLRPEYKKLKEE 361
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAV 73
+LD +++R VWL++ P+ +A+ W+++ ++ Q + K+ + D + T+
Sbjct: 58 DLDLERSNRQVWLVRLPMFLAEKWRDR-NNLHGQELGKI-----RINKDGSKITLLLNEN 111
Query: 74 SNDSLNRPKSYSLNMFKDFVPMS-VFSESNQGK 105
NDS+ P Y L + K V VF+E N K
Sbjct: 112 DNDSI--PHEYDLELTKKVVENEYVFTEQNLKK 142
>gi|365760663|gb|EHN02368.1| Tfg2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 400
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 78/154 (50%), Gaps = 4/154 (2%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQ-IQVIDNDHGVHMRPMPGM 163
K A+ G V H+ + P N Y ++ +R N + N++ I +D GV M GM
Sbjct: 211 KTAIVGTVCHECQVMPS-MNDPNYHKIVEQRRNIVKLNNKERITTLDETVGVTM-SHTGM 268
Query: 164 VGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQ 223
+ S NS K + ++ +K R + E+ D +FKLF+ W+LK L + T QP
Sbjct: 269 -SMRSDNSNFLKVGREKAKSNIKSIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQPEA 327
Query: 224 FLKEILNELCVYNKRGTNQGTYELKPEYKKSVED 257
LKE L+++ K+G Y L+PEYKK E+
Sbjct: 328 HLKECLDKVATLVKKGPYAFKYTLRPEYKKLKEE 361
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAV 73
+LD ++ R VWL++ P+ +A+ W+++ ++ Q + K+ + D + T+
Sbjct: 58 DLDLERSSRQVWLVRLPMFLAEKWRDR-NNLHGQELGKI-----RINKDGSKITLVLNEN 111
Query: 74 SNDSLNRPKSYSLNMFKDFVPMS-VFSESNQGK 105
NDS+ P Y L + K V VF+E N K
Sbjct: 112 DNDSI--PHEYDLELTKKVVENEYVFTEQNLKK 142
>gi|259146508|emb|CAY79765.1| Tfg2p [Saccharomyces cerevisiae EC1118]
Length = 400
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 78/154 (50%), Gaps = 4/154 (2%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQ-IQVIDNDHGVHMRPMPGM 163
K A+ G V H+ + P N Y ++ +R N + N++ I +D GV M GM
Sbjct: 211 KTAIVGTVCHECQVMPS-MNDPNYHKIVEQRRNIVKLNNKERITTLDETVGVTM-SHTGM 268
Query: 164 VGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQ 223
+ S NS K + ++ +K R + E+ D +FKLF+ W+LK L + T QP
Sbjct: 269 -SMRSDNSNFLKVGREKAKSNIKSIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQPEA 327
Query: 224 FLKEILNELCVYNKRGTNQGTYELKPEYKKSVED 257
LKE L+++ K+G Y L+PEYKK E+
Sbjct: 328 HLKECLDKVATLVKKGPYAFKYTLRPEYKKLKEE 361
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAV 73
+LD +++R VWL++ P+ +A+ W+++ ++ Q + K+ + D + T+
Sbjct: 58 DLDLERSNRQVWLVRLPMFLAEKWRDR-NNLHGQELGKI-----RINKDGSKITLLLNEN 111
Query: 74 SNDSLNRPKSYSLNMFKDFVPMS-VFSESN 102
NDS+ P Y L + K V VF+E N
Sbjct: 112 DNDSI--PHEYDLELTKKVVENEYVFTEQN 139
>gi|323337655|gb|EGA78900.1| Tfg2p [Saccharomyces cerevisiae Vin13]
Length = 400
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 78/154 (50%), Gaps = 4/154 (2%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQ-IQVIDNDHGVHMRPMPGM 163
K A+ G V H+ + P N Y ++ +R N + N++ I +D GV M GM
Sbjct: 211 KTAIVGTVCHECQVMPS-MNDPNYHKIVEQRRNIVKLNNKERITTLDETVGVTM-SHTGM 268
Query: 164 VGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQ 223
+ S NS K + ++ +K R + E+ D +FKLF+ W+LK L + T QP
Sbjct: 269 -SMRSDNSNFLKVGREKAKSNIKSIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQPEA 327
Query: 224 FLKEILNELCVYNKRGTNQGTYELKPEYKKSVED 257
LKE L+++ K+G Y L+PEYKK E+
Sbjct: 328 HLKECLDKVATLVKKGPYAFKYTLRPEYKKLKEE 361
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAV 73
+LD +++R VWL++ P+ +A+ W+++ ++ Q + K+ + D + T+
Sbjct: 58 DLDLERSNRQVWLVRLPMFLAEKWRDR-NNLHGQELGKI-----RINKDGSKITLLLNEN 111
Query: 74 SNDSLNRPKSYSLNMFKDFVPMS-VFSESN 102
NDS+ P Y L + K V VF+E N
Sbjct: 112 DNDSI--PHEYDLELTKKVVENEYVFTEQN 139
>gi|281349943|gb|EFB25527.1| hypothetical protein PANDA_002952 [Ailuropoda melanoleuca]
Length = 123
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 48/72 (66%)
Query: 181 KQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGT 240
K+ + KR R D+ + D++F FE+ + LK LV T QP +LKEIL E+ V N +GT
Sbjct: 43 KKEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGVQNVKGT 102
Query: 241 NQGTYELKPEYK 252
++ T+ELKPEY+
Sbjct: 103 HKNTWELKPEYR 114
>gi|398365043|ref|NP_011519.3| Tfg2p [Saccharomyces cerevisiae S288c]
gi|1729818|sp|P41896.2|T2FB_YEAST RecName: Full=Transcription initiation factor IIF subunit beta;
AltName: Full=ATP-dependent helicase TFG2; AltName:
Full=TFIIF medium subunit; AltName: Full=TFIIF-beta;
AltName: Full=Transcription factor G 54 kDa subunit
gi|1322961|emb|CAA96988.1| TFG2 [Saccharomyces cerevisiae]
gi|51013193|gb|AAT92890.1| YGR005C [Saccharomyces cerevisiae]
gi|151943292|gb|EDN61605.1| transcription initiation factor TFIIF middle subunit [Saccharomyces
cerevisiae YJM789]
gi|190406965|gb|EDV10232.1| transcription initiation factor IIF beta subunit [Saccharomyces
cerevisiae RM11-1a]
gi|207345246|gb|EDZ72129.1| YGR005Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256273879|gb|EEU08800.1| Tfg2p [Saccharomyces cerevisiae JAY291]
gi|285812203|tpg|DAA08103.1| TPA: Tfg2p [Saccharomyces cerevisiae S288c]
gi|323309114|gb|EGA62342.1| Tfg2p [Saccharomyces cerevisiae FostersO]
gi|323333468|gb|EGA74862.1| Tfg2p [Saccharomyces cerevisiae AWRI796]
gi|349578225|dbj|GAA23391.1| K7_Tfg2p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365765618|gb|EHN07125.1| Tfg2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299264|gb|EIW10358.1| Tfg2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 400
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 78/154 (50%), Gaps = 4/154 (2%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQ-IQVIDNDHGVHMRPMPGM 163
K A+ G V H+ + P N Y ++ +R N + N++ I +D GV M GM
Sbjct: 211 KTAIVGTVCHECQVMPS-MNDPNYHKIVEQRRNIVKLNNKERITTLDETVGVTM-SHTGM 268
Query: 164 VGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQ 223
+ S NS K + ++ +K R + E+ D +FKLF+ W+LK L + T QP
Sbjct: 269 -SMRSDNSNFLKVGREKAKSNIKSIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQPEA 327
Query: 224 FLKEILNELCVYNKRGTNQGTYELKPEYKKSVED 257
LKE L+++ K+G Y L+PEYKK E+
Sbjct: 328 HLKECLDKVATLVKKGPYAFKYTLRPEYKKLKEE 361
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAV 73
+LD +++R VWL++ P+ +A+ W+++ ++ Q + K+ + D + T+
Sbjct: 58 DLDLERSNRQVWLVRLPMFLAEKWRDR-NNLHGQELGKI-----RINKDGSKITLLLNEN 111
Query: 74 SNDSLNRPKSYSLNMFKDFVPMS-VFSESNQGK 105
NDS+ P Y L + K V VF+E N K
Sbjct: 112 DNDSI--PHEYDLELTKKVVENEYVFTEQNLKK 142
>gi|401840264|gb|EJT43155.1| TFG2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 400
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 78/154 (50%), Gaps = 4/154 (2%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQ-IQVIDNDHGVHMRPMPGM 163
K A+ G V H+ + P N Y ++ +R N + N++ I +D GV M GM
Sbjct: 211 KTAIVGTVCHECQVMPS-MNDPNYHKIVEQRRNIVKLNNKERITTLDETVGVTM-SHTGM 268
Query: 164 VGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQ 223
+ S NS K + ++ +K R + E+ D +FKLF+ W+LK L + T QP
Sbjct: 269 -SMRSDNSNFLKVGREKAKSNIKSIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQPEA 327
Query: 224 FLKEILNELCVYNKRGTNQGTYELKPEYKKSVED 257
LKE L+++ K+G Y L+PEYKK E+
Sbjct: 328 HLKECLDKVATLVKKGPYAFKYTLRPEYKKLKEE 361
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAV 73
+LD ++ R VWL++ P+ +A+ W+++ ++ Q + K+ + D + T+
Sbjct: 58 DLDLERSSRQVWLVRLPMFLAEKWRDR-NNLHGQELGKI-----RINKDGSKITLVLNEN 111
Query: 74 SNDSLNRPKSYSLNMFKDFVPMS-VFSESNQGK 105
NDS+ P Y L + K V VF+E N K
Sbjct: 112 DNDSI--PHEYDLELTKKVVENEYVFTEQNLKK 142
>gi|350633101|gb|EHA21467.1| transcription initiation factor IIF, beta subunit [Aspergillus
niger ATCC 1015]
Length = 383
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 73/299 (24%), Positives = 125/299 (41%), Gaps = 65/299 (21%)
Query: 13 GNLDTAKADRSVWLMKCPLVVAKSWQNQASS--QDSQPVAKVILSLDPLQSDSMQFTMET 70
G+LD + A++SVWL + P + + W + ++S D + + + ++ Q+D + ++
Sbjct: 46 GDLDFSAANQSVWLSRLPRSLWEHWAHLSNSAGDDDEEIQIGTMRIEGTQNDLKRVSLRI 105
Query: 71 TAVSNDSLNRPKSYSLN-----------------MFKDF-VP-----MSVFSESNQG--- 104
A D+ + PK Y L +F + +P M VF E+
Sbjct: 106 NA-REDNRDIPKDYLLQRQTITSENVSHLTQNTYLFTERDLPGHENRMVVFGEARSALYE 164
Query: 105 -------------------------KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKS 139
+ A+ G V +F+ P E EE+ RL ++ ++
Sbjct: 165 SMKRDMRKKERKKKWEPYVRKTVPKQTALVGSVSEEFNCLPVEN--EEFRRLSEKKALEA 222
Query: 140 MIKNRQIQVIDNDHGVHMRP---MPGMVG-LISSNSKDKKKAQPVKQTEVKRTRRDRGEL 195
+ R+ ID G ++P +PG G + + K KAQ E K TR + EL
Sbjct: 223 LKPKRETVFIDKIPGKMLQPRNALPGEKGAFVQATRPVKAKAQ-----ENKTTRMPQNEL 277
Query: 196 EDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKS 254
D++++ F W K L QP +LK+ L + K G T+ELKPE ++S
Sbjct: 278 LDLIYQCFREYKYWPFKNLKARLRQPEAYLKQTLEMVAHLVKAGDFAMTWELKPEARES 336
>gi|401625726|gb|EJS43721.1| tfg2p [Saccharomyces arboricola H-6]
Length = 399
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 78/154 (50%), Gaps = 4/154 (2%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQ-IQVIDNDHGVHMRPMPGM 163
K A+ G V H+ + P N Y ++ +R N + N++ I +D GV M GM
Sbjct: 210 KTAIVGTVCHECQVMPS-MNDPNYHKIVEQRRNIVKLNNKERITTLDETVGVTM-SHTGM 267
Query: 164 VGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQ 223
+ S NS K + ++ +K R + E+ D +FKLF+ W+LK L + T QP
Sbjct: 268 -SMRSDNSNFLKVGREKAKSNIKSIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQPEA 326
Query: 224 FLKEILNELCVYNKRGTNQGTYELKPEYKKSVED 257
LKE L+++ K+G Y L+PEYKK E+
Sbjct: 327 HLKECLDKVATLVKKGPYAFKYTLRPEYKKLKEE 360
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 9/93 (9%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAV 73
+LD +++R VWL++ P+ +A+ W+++ ++ Q + K+ ++ D + T+
Sbjct: 57 DLDLERSNRQVWLVRLPMFLAEKWRDR-NNLHGQELGKIRIN-----KDGSKITLLLNEN 110
Query: 74 SNDSLNRPKSYSLNMFKDFVPMS-VFSESNQGK 105
NDS+ P Y L + K V VF+E N K
Sbjct: 111 DNDSI--PHEYDLELTKKVVENEYVFTEQNLKK 141
>gi|47199299|emb|CAF89231.1| unnamed protein product [Tetraodon nigroviridis]
Length = 146
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 49/72 (68%)
Query: 181 KQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGT 240
K++E K R +R + D++F FE+ ++ +K+LV T QP +LKEIL E+ YN +G
Sbjct: 74 KKSEGKMVRAERQAVLDMLFSAFEKHQHYNIKELVDITKQPVTYLKEILKEIGTYNNKGP 133
Query: 241 NQGTYELKPEYK 252
++ T+E+KPEY+
Sbjct: 134 HKSTWEVKPEYR 145
>gi|145253018|ref|XP_001398022.1| transcription initiation factor iif, beta subunit [Aspergillus
niger CBS 513.88]
gi|134083580|emb|CAL00495.1| unnamed protein product [Aspergillus niger]
Length = 383
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 73/299 (24%), Positives = 125/299 (41%), Gaps = 65/299 (21%)
Query: 13 GNLDTAKADRSVWLMKCPLVVAKSWQNQASS--QDSQPVAKVILSLDPLQSDSMQFTMET 70
G+LD + A++SVWL + P + + W + ++S D + + + ++ Q+D + ++
Sbjct: 46 GDLDFSAANQSVWLSRLPRSLWEHWAHLSNSAGDDDEEIQIGTMRIEGTQNDLKRVSLRI 105
Query: 71 TAVSNDSLNRPKSYSLN-----------------MFKDF-VP-----MSVFSESNQG--- 104
A D+ + PK Y L +F + +P M VF E+
Sbjct: 106 NA-REDNRDIPKDYLLQRQTITSENVSHLTQNTYLFTERDLPGHENRMVVFGEARSALYE 164
Query: 105 -------------------------KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKS 139
+ A+ G V +F+ P E EE+ RL ++ ++
Sbjct: 165 SMKRDMRKKERKKKWEPYVRKTVPKQTALVGSVSEEFNCLPVEN--EEFRRLSEKKALEA 222
Query: 140 MIKNRQIQVIDNDHGVHMRP---MPGMVG-LISSNSKDKKKAQPVKQTEVKRTRRDRGEL 195
+ R+ ID G ++P +PG G + + K KAQ E K TR + EL
Sbjct: 223 LKPKRETVFIDKIPGKMLQPRNALPGEKGAFVQATRPVKPKAQ-----ENKTTRMPQNEL 277
Query: 196 EDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKS 254
D++++ F W K L QP +LK+ L + K G T+ELKPE ++S
Sbjct: 278 LDLIYQCFREYKYWPFKNLKARLRQPEAYLKQTLEMVAHLVKAGDFAMTWELKPEARES 336
>gi|449540474|gb|EMD31465.1| hypothetical protein CERSUDRAFT_119685 [Ceriporiopsis subvermispora
B]
Length = 324
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 111/263 (42%), Gaps = 54/263 (20%)
Query: 24 VWLMKCP----------------LVVAKSWQNQASSQDSQPVAKVILSLDP------LQS 61
VWL+K P L + + SS +P +++L L P +
Sbjct: 41 VWLVKIPKHLMEKWSSIDQEGVHLATIRVYHQAESSTGKKP--RILLKLPPNPANPDGEG 98
Query: 62 DSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPH 121
D + M AV N + + + S + G+V+H+ +++P
Sbjct: 99 DEYEMDMVNEAVENQVVVAEREKEPG-----------TASRARTTILTGRVKHECNLRP- 146
Query: 122 EKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLIS------SNSKD-- 173
E Y + +ER + RQI I++ +PG G I+ S++K
Sbjct: 147 -VFSERYRQRIKERHRVANAPARQIMRIEDA-------LPGGRGNINMLTSGVSHTKPFD 198
Query: 174 --KKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNE 231
+ K +P K + R R +L D +FK F+ + +W++K L + T QP +LKE+L E
Sbjct: 199 LVRPKPKPPKGQFERMARMPRDQLLDELFKAFQEREHWSIKVLRERTQQPEAYLKEVLGE 258
Query: 232 LCVYNKRGTNQGTYELKPEYKKS 254
+ ++ G + GT+EL YK S
Sbjct: 259 IAFLHRAGEHSGTWELLANYKGS 281
>gi|366987389|ref|XP_003673461.1| hypothetical protein NCAS_0A05170 [Naumovozyma castellii CBS 4309]
gi|342299324|emb|CCC67075.1| hypothetical protein NCAS_0A05170 [Naumovozyma castellii CBS 4309]
Length = 412
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 78/154 (50%), Gaps = 4/154 (2%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQ-IQVIDNDHGVHMRPMPGM 163
K A+ G V H+ + P N Y ++ +R N N++ I ++ GV MR GM
Sbjct: 215 KTAIVGTVCHECQVMPS-MNDPNYNKIVEQRRNIVKSNNKERITTLEETVGVTMR-HAGM 272
Query: 164 VGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQ 223
+ S S K + ++ +K R + E+ D +FKLF+ W+LK L + T QP
Sbjct: 273 -SMKSDTSNFLKVGREKTKSNIKSIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQPEA 331
Query: 224 FLKEILNELCVYNKRGTNQGTYELKPEYKKSVED 257
LKE L+++ + K+G Y LKPEYKK E+
Sbjct: 332 HLKECLDKVAILVKKGPYAFKYTLKPEYKKLKEE 365
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAV 73
+LD ++++R +WL++ P+ +A++W+++ ++ Q + K+ ++ D + +
Sbjct: 62 DLDLSRSNRQIWLVRLPMFLAETWRDR-NNLHGQELGKIRIN-----KDGSKIKLMLNEN 115
Query: 74 SNDSLNRPKSYSLNMFKDFVPMS-VFSESNQGK 105
ND++ P Y L + K V +F+E N K
Sbjct: 116 DNDTI--PHEYDLELTKKIVENEYIFTEQNLKK 146
>gi|25151550|ref|NP_741661.1| Protein Y39B6A.36 [Caenorhabditis elegans]
gi|21038853|emb|CAD31828.1| Protein Y39B6A.36 [Caenorhabditis elegans]
Length = 263
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 120/264 (45%), Gaps = 46/264 (17%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQN---------QASSQDSQPVAKVILSLDPLQSDSM 64
++D A RS+WL+K P +++ W Q +Q AK ++ P
Sbjct: 10 DVDCELAKRSIWLVKVPRYLSELWDANEGNVVGKLQIGAQVELHTAKGLIHPKP------ 63
Query: 65 QFTMETTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQG----------KVA 107
E T S+ ++ +P++ + F+ MSV SE QG K+A
Sbjct: 64 ---KEPTEGSSSTVTQPEASEIPTEYSFILHDVKSQTMSVLSEDKQGLGADAPIKTGKLA 120
Query: 108 MEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLI 167
+EG++ K + +P + +Y ++ K+ + +++I+ V +P +
Sbjct: 121 IEGRIIKKAECRPPATS--KYMKMKLAHIVKNTQPKKTVKMIEKA-AVKFKP-------V 170
Query: 168 SSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKE 227
S +++D K++ K+ K R DR L +FK FE+ + L+ L Q QP ++KE
Sbjct: 171 SVHAEDMIKSKQ-KKDGAKTYRADRDVLRGALFKAFEKHSFYRLQDLQQLLQQPVSYVKE 229
Query: 228 ILNELCVYNKRGTNQGTYELKPEY 251
+L E+ VYN ++ + LKPEY
Sbjct: 230 VLQEIAVYNTAPPHKSLWCLKPEY 253
>gi|392563992|gb|EIW57170.1| hypothetical protein TRAVEDRAFT_168775 [Trametes versicolor
FP-101664 SS1]
Length = 318
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 107/264 (40%), Gaps = 61/264 (23%)
Query: 24 VWLMKCPLVVAKSWQ---------------NQA-SSQDSQPVAKVILSLDPLQSDSMQFT 67
VWL+K P + + W +QA SS +P + L DP +
Sbjct: 41 VWLVKIPRHLMERWSAIDEEGVHLASIRIYHQAESSLGRRPRIVLTLPPDPKHPEE---- 96
Query: 68 METTAVSNDSLNRPKSYSLNMFKDFVPMSVF---------SESNQGKVAMEGKVEHKFDM 118
P Y ++M V + + S + G V+H+ +M
Sbjct: 97 -------------PDEYEMDMVNHDVENQIVIAEREKEPGTASRARTTILTGSVKHECNM 143
Query: 119 KPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVG---LISSNSKD-- 173
+P E Y R +ER + R I++ H PG G +++S +K+
Sbjct: 144 RP--TLTERYRRQLKERNRAANAPKRTTMRIEDAH-------PGGRGEINMLTSGAKNHA 194
Query: 174 -----KKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEI 228
K K +P K + R R +L D +F+ F+ + W++K L + T QP +LKE+
Sbjct: 195 GFNLVKAKPKPQKGQFERMARMPRDQLLDELFRAFQERERWSIKVLRERTQQPEAYLKEV 254
Query: 229 LNELCVYNKRGTNQGTYELKPEYK 252
L+E+ ++ G G++EL YK
Sbjct: 255 LSEIAFLHRSGEFNGSWELLANYK 278
>gi|296818645|ref|XP_002849659.1| transcription initiation factor IIF subunit beta [Arthroderma otae
CBS 113480]
gi|238840112|gb|EEQ29774.1| transcription initiation factor IIF subunit beta [Arthroderma otae
CBS 113480]
Length = 381
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 71/150 (47%), Gaps = 3/150 (2%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
+ A+ +V +F+ P E EEY R+ ER +S+ R+ + I+ G +RP +
Sbjct: 184 QTAITARVHDEFNCLPVEN--EEYQRIAEERALESLKPKRETKFIEKVPGKMLRPK-TVA 240
Query: 165 GLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQF 224
SN K V+ E K R + EL D+++ F R W K L E QP +
Sbjct: 241 AADKSNFIQVTKPAKVRAQENKTARMPQNELLDLIYACFRRYKYWPFKSLKAELRQPEVY 300
Query: 225 LKEILNELCVYNKRGTNQGTYELKPEYKKS 254
LK+ L + K G T+ELKPE ++S
Sbjct: 301 LKQTLEIVAHLVKSGDFALTWELKPEARES 330
>gi|326482640|gb|EGE06650.1| transcription initiation factor IIF subunit beta [Trichophyton
equinum CBS 127.97]
Length = 383
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 71/150 (47%), Gaps = 3/150 (2%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
+ A+ +V +F+ P E EEY RL ER +S+ R+ + I+ G ++P +
Sbjct: 186 QTAITARVHDEFNCLPVEN--EEYQRLAEERALESLKPKRETKFIEKVPGKMLQPK-TVA 242
Query: 165 GLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQF 224
SN K V+ E K R + EL D+++ F R W K L E QP +
Sbjct: 243 AADKSNFIQIAKPAKVRAQENKTARMPQNELLDLIYACFRRHKYWPFKALKAELQQPEVY 302
Query: 225 LKEILNELCVYNKRGTNQGTYELKPEYKKS 254
LK+ L + K G T+ELKPE ++S
Sbjct: 303 LKQTLEIVAHLVKSGDFAMTWELKPEARES 332
>gi|326470092|gb|EGD94101.1| transcription initiation factor iif [Trichophyton tonsurans CBS
112818]
Length = 381
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 71/150 (47%), Gaps = 3/150 (2%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
+ A+ +V +F+ P E EEY RL ER +S+ R+ + I+ G ++P +
Sbjct: 184 QTAITARVHDEFNCLPVEN--EEYQRLAEERALESLKPKRETKFIEKVPGKMLQPK-TVA 240
Query: 165 GLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQF 224
SN K V+ E K R + EL D+++ F R W K L E QP +
Sbjct: 241 AADKSNFIQIAKPAKVRAQENKTARMPQNELLDLIYACFRRHKYWPFKALKAELQQPEVY 300
Query: 225 LKEILNELCVYNKRGTNQGTYELKPEYKKS 254
LK+ L + K G T+ELKPE ++S
Sbjct: 301 LKQTLEIVAHLVKSGDFAMTWELKPEARES 330
>gi|444321913|ref|XP_004181612.1| hypothetical protein TBLA_0G01470 [Tetrapisispora blattae CBS 6284]
gi|387514657|emb|CCH62093.1| hypothetical protein TBLA_0G01470 [Tetrapisispora blattae CBS 6284]
Length = 399
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 78/156 (50%), Gaps = 8/156 (5%)
Query: 105 KVAMEGKVEHKFDMKP--HEKNMEEYGRLCRERTNKSMIKNRQ-IQVIDNDHGVHMRPMP 161
K A+ G + H+ + P H+ N Y ++ +R N N++ I +D GV M
Sbjct: 205 KTAVIGTICHECQVMPSMHDPN---YNKIVEQRRNIVKYNNKERITTLDETVGVTM-SHT 260
Query: 162 GMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
GM + S NS K + + +K R + E+ D +FKLF+ W+LK L + T QP
Sbjct: 261 GM-SMRSDNSNFLKVGREKTKNNIKSIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQP 319
Query: 222 AQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVED 257
LKE L+++ K+G Y L+PEYKK E+
Sbjct: 320 EAHLKECLDKVATLVKKGPYAFKYTLRPEYKKLKEE 355
Score = 37.0 bits (84), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAV 73
+L+ +R VWL++ P+ +AK W+++ + Q + K+ + D + +
Sbjct: 52 DLNLTNNNRQVWLVRLPMFLAKVWRDRNNLH-GQELGKI-----KINKDGSKIKLMLNEN 105
Query: 74 SNDSLNRPKSYSLNMFKDFVPMS-VFSESN 102
NDS+ P Y L + K V VF+E N
Sbjct: 106 DNDSI--PHEYDLELTKKVVENEFVFTEQN 133
>gi|327298045|ref|XP_003233716.1| transcription initiation factor iif [Trichophyton rubrum CBS
118892]
gi|326463894|gb|EGD89347.1| transcription initiation factor iif [Trichophyton rubrum CBS
118892]
Length = 381
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 71/150 (47%), Gaps = 3/150 (2%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
+ A+ +V +F+ P E EEY RL ER +S+ R+ + I+ G ++P +
Sbjct: 184 QTAITARVHDEFNCLPVEN--EEYQRLAEERALESLKPKRETKFIEKVPGKMLQPK-TVA 240
Query: 165 GLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQF 224
SN K V+ E K R + EL D+++ F R W K L E QP +
Sbjct: 241 AADKSNFIQIAKPAKVRAQENKTARMPQNELLDLIYACFRRHKYWPFKALKAELQQPEVY 300
Query: 225 LKEILNELCVYNKRGTNQGTYELKPEYKKS 254
LK+ L + K G T+ELKPE ++S
Sbjct: 301 LKQTLEIVAHLVKSGDFAMTWELKPEARES 330
>gi|302507152|ref|XP_003015537.1| hypothetical protein ARB_05848 [Arthroderma benhamiae CBS 112371]
gi|291179105|gb|EFE34892.1| hypothetical protein ARB_05848 [Arthroderma benhamiae CBS 112371]
Length = 381
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 71/150 (47%), Gaps = 3/150 (2%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
+ A+ +V +F+ P E EEY RL ER +S+ R+ + I+ G ++P +
Sbjct: 184 QTAITARVHDEFNCLPVEN--EEYQRLAEERALESLKPKRETKFIEKVPGKMLQPK-TVA 240
Query: 165 GLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQF 224
SN K V+ E K R + EL D+++ F R W K L E QP +
Sbjct: 241 AADKSNFIQIAKPAKVRAQENKTARMPQNELLDLIYACFRRHKYWPFKALKAELQQPEVY 300
Query: 225 LKEILNELCVYNKRGTNQGTYELKPEYKKS 254
LK+ L + K G T+ELKPE ++S
Sbjct: 301 LKQTLEIVAHLVKSGDFAMTWELKPEARES 330
>gi|315040055|ref|XP_003169405.1| hypothetical protein MGYG_08309 [Arthroderma gypseum CBS 118893]
gi|311346095|gb|EFR05298.1| hypothetical protein MGYG_08309 [Arthroderma gypseum CBS 118893]
Length = 381
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 71/150 (47%), Gaps = 3/150 (2%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
+ A+ +V +F+ P E EEY RL ER +S+ R+ + I+ G ++P +
Sbjct: 184 QTAITARVHDEFNCLPVEN--EEYQRLAEERALESLKPKRETKFIEKVPGKMLQPK-TVA 240
Query: 165 GLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQF 224
SN K V+ E K R + EL D+++ F R W K L E QP +
Sbjct: 241 AADKSNFIQVAKPAKVRAQENKTARMPQNELLDLIYACFRRHKYWPFKSLKAELRQPEVY 300
Query: 225 LKEILNELCVYNKRGTNQGTYELKPEYKKS 254
LK+ L + K G T+ELKPE ++S
Sbjct: 301 LKQTLEIVAHLVKSGDFAMTWELKPEARES 330
>gi|169863699|ref|XP_001838468.1| hypothetical protein CC1G_09096 [Coprinopsis cinerea okayama7#130]
gi|116500507|gb|EAU83402.1| hypothetical protein CC1G_09096 [Coprinopsis cinerea okayama7#130]
Length = 387
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 83/175 (47%), Gaps = 22/175 (12%)
Query: 92 FVPMSVFSESNQGKVA-MEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVID 150
F+P +++ + + G+++H+ +++P Y + RER K RQ+ I+
Sbjct: 178 FIPPGAAPANSRARTTILTGRIKHECNLRPSFS--ATYRKQMRERHRKYNTPTRQVMRIE 235
Query: 151 NDHGVHMRPMPGMVGLISSNSKD-------------KKKAQPVKQTEVKRTRRDRGELED 197
D GV G G I+ S + K +P K T + R R +L D
Sbjct: 236 -DAGVS-----GGRGGINRLSSGVGVGAGGAFSDLVRTKPKPTKGTFERMARMPRNQLLD 289
Query: 198 IMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK 252
+F LF Q W++K L + T QP +LKE+L+++ ++ G + G +ELK +K
Sbjct: 290 NLFSLFREQQRWSIKPLRERTQQPEVYLKEVLSDIAFLHRSGEHNGLWELKANFK 344
>gi|90086425|dbj|BAE91765.1| unnamed protein product [Macaca fascicularis]
Length = 125
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 47/72 (65%)
Query: 181 KQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGT 240
K+ + KR R D+ + D++F FE+ + LK LV T QP +LKEIL E+ V N +G
Sbjct: 45 KKEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGI 104
Query: 241 NQGTYELKPEYK 252
++ T+ELKPEY+
Sbjct: 105 HKNTWELKPEYR 116
>gi|443721667|gb|ELU10906.1| hypothetical protein CAPTEDRAFT_544 [Capitella teleta]
Length = 211
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 84/160 (52%), Gaps = 15/160 (9%)
Query: 99 SESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGV-HM 157
S SN+ ++++EGKV + + KP + + + +R++ N QV+ D V +
Sbjct: 59 SSSNE-ELSLEGKVIQRAECKP----VADSNYMALKRSSFETSNNPARQVVHLDKAVLNY 113
Query: 158 RPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQE 217
+P ++ ++K K + KR R D+ + +++F FE+ + LK LV+
Sbjct: 114 KPKSIHSAMVEMDNKPKDQ---------KRMRMDKDRVMEMLFSAFEKHQYYNLKDLVKI 164
Query: 218 TDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVED 257
TDQP FLKEIL E+ YN + ++ +ELK E++ +D
Sbjct: 165 TDQPVVFLKEILREIGNYNMKAPHKNMWELKSEFRHYKDD 204
>gi|156844255|ref|XP_001645191.1| hypothetical protein Kpol_1062p42 [Vanderwaltozyma polyspora DSM
70294]
gi|156115849|gb|EDO17333.1| hypothetical protein Kpol_1062p42 [Vanderwaltozyma polyspora DSM
70294]
Length = 408
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 78/156 (50%), Gaps = 8/156 (5%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKN---RQIQVIDNDHGVHMRPMP 161
K ++ G V H+ + P N Y ++ +R N ++KN +I +D GV M
Sbjct: 202 KTSISGTVCHECQVMP-SMNDPNYHKIVEQRRN--IVKNSNKERITTLDETVGVTM-SHT 257
Query: 162 GMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
GM + S NS K + + +K R + E+ D +FKLF+ W+LK L + T QP
Sbjct: 258 GM-SMKSDNSNFLKVGREKAKANIKSIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQP 316
Query: 222 AQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVED 257
LKE L+++ K+G Y L+PEYKK E+
Sbjct: 317 EAHLKECLDKVATLVKKGPYAFKYTLRPEYKKLKEE 352
>gi|443898632|dbj|GAC75966.1| transcription initiation factor IIF, small subunit [Pseudozyma
antarctica T-34]
Length = 401
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 60/114 (52%), Gaps = 6/114 (5%)
Query: 144 RQIQVIDN-DHGVHMRPMPGM-VGLISS----NSKDKKKAQPVKQTEVKRTRRDRGELED 197
R I+++D+ D G H + G+ GL S N+ K + K R + EL D
Sbjct: 241 RTIKMLDSADAGRHNMLVAGVGAGLHSQKSRFNAAIATKPKATGAGTEKFARMPKNELLD 300
Query: 198 IMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEY 251
++F LFER W+LK+L ET QP +L+E L + +KRG G + LKPEY
Sbjct: 301 LLFALFERWQYWSLKKLRTETQQPESYLRETLTGIADLHKRGPYVGNWSLKPEY 354
>gi|296481326|tpg|DAA23441.1| TPA: general transcription factor IIF, polypeptide 2, 30kDa-like
[Bos taurus]
Length = 118
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 47/72 (65%)
Query: 181 KQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGT 240
K+ + KR R D+ + D++F FE+ + LK LV T QP +LK+IL E+ V N +G
Sbjct: 38 KKEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVSYLKDILKEIGVQNVKGI 97
Query: 241 NQGTYELKPEYK 252
++ T+ELKPEY+
Sbjct: 98 HKNTWELKPEYR 109
>gi|395326223|gb|EJF58635.1| transcription initiation factor IIF beta subunit [Dichomitus
squalens LYAD-421 SS1]
Length = 317
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 113/249 (45%), Gaps = 31/249 (12%)
Query: 24 VWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAVSN-DSLNRPK 82
VWL+K P + + W A ++ P+A + + + + + + N ++ +
Sbjct: 37 VWLVKIPRHLMERWS--AIDEEGVPLATIRVYHNAETATGKKPRIMLLLPPNPETGAEAE 94
Query: 83 SYSLNMFKDFVPMSVF---------SESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCR 133
Y ++M D V + ++S + G+V+H+ +++P + Y + +
Sbjct: 95 EYEMDMVNDDVENQIVVAEREKEPGTQSRARTTILTGRVKHECNLRPILTD--RYRQRLK 152
Query: 134 ERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLI----------SSNSKDKKKAQPVKQT 183
R + R+I++I++ +PG G I S S + KA+P K
Sbjct: 153 MRNLSANQPTRRIRMIED-------AVPGGRGNINMLTSGAAQHSPFSLVRPKAKPAKGQ 205
Query: 184 EVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQG 243
+ R R +L D +FK F+ + W++K L + T QP +LKE+L+E+ ++ G G
Sbjct: 206 FERMARMPRDQLLDELFKAFQERERWSIKALRERTQQPEAYLKEVLSEIAFLHRSGEFNG 265
Query: 244 TYELKPEYK 252
++EL YK
Sbjct: 266 SWELMANYK 274
>gi|403416077|emb|CCM02777.1| predicted protein [Fibroporia radiculosa]
Length = 329
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 81/152 (53%), Gaps = 13/152 (8%)
Query: 108 MEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLI 167
+ G+V+H+ +++P + Y + ++R + +QI I+ + GV R G + ++
Sbjct: 132 LTGRVKHECNLRP--VFTDRYRQRLKQRAVAANTPKKQIMWIE-EAGVGGR---GNINML 185
Query: 168 SSN-------SKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQ 220
+S S K K +P K + R R +L D +F+ F+ + +W++K L + T Q
Sbjct: 186 TSGVTNAVPFSFGKPKPKPAKGQFERMARMPRDQLLDGLFRAFQEREHWSIKVLRERTQQ 245
Query: 221 PAQFLKEILNELCVYNKRGTNQGTYELKPEYK 252
P +LKE+L+E+ ++ G + GT+EL +K
Sbjct: 246 PEAYLKEVLSEIAFLHRSGEHNGTWELLQNFK 277
>gi|429961404|gb|ELA40949.1| hypothetical protein VICG_02038 [Vittaforma corneae ATCC 50505]
Length = 236
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 186 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTY 245
KR R ++ ++ +I+F FE+ W ++ L + QP +++EI+NE+CV NK+ ++ TY
Sbjct: 169 KRERLEKTDVMEIVFNAFEKHKRWTVRDLADFSGQPVAYIQEIVNEICVLNKKD-HKNTY 227
Query: 246 ELKPEYK 252
ELKPEYK
Sbjct: 228 ELKPEYK 234
>gi|149049980|gb|EDM02304.1| general transcription factor IIF, polypeptide 2, isoform CRA_a
[Rattus norvegicus]
Length = 125
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 47/72 (65%)
Query: 181 KQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGT 240
K+ + KR R D+ + D++F FE+ + LK LV T QP +LKEIL E+ + N +G
Sbjct: 45 KKEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVKGI 104
Query: 241 NQGTYELKPEYK 252
++ T+ELKPEY+
Sbjct: 105 HKNTWELKPEYR 116
>gi|393245345|gb|EJD52856.1| hypothetical protein AURDEDRAFT_111380 [Auricularia delicata
TFB-10046 SS5]
Length = 359
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 74/289 (25%), Positives = 116/289 (40%), Gaps = 65/289 (22%)
Query: 23 SVWLMKCPLVVAKSWQNQASSQ----------DSQPVAK-----VILSLDP-------LQ 60
S+W++K P + K W + + + PV K +IL DP Q
Sbjct: 40 SMWMVKMPKFLLKRWTSVTEANIHLATIRVYDEVDPVTKTQRMEIILPDDPNEPDVEMTQ 99
Query: 61 S---------------DSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVP-MSVFSE---- 100
S D M+ TA L R K Y L M V V +E
Sbjct: 100 STLSTEPSSQQDEDTMDPAALYMKLTAELEAELQRAKEYELQMIDLNVNNQLVIAERDLT 159
Query: 101 ---SNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQI----QVIDND- 152
S GK+ H+ +++P Y R+ +ER + + R I +V++
Sbjct: 160 DPPSRTKATTRNGKIRHECNLQPIMNA--RYRRIIKERVRIANMSKRPIMRMEEVLETQA 217
Query: 153 -----HGVHMRPMPGMVGLISSNSKDKKKAQP-VKQTEVKR-TRRDRGELEDIMFKLFER 205
GV P +SS + + +P ++ E +R R R EL D +F+ F+
Sbjct: 218 INRLASGVPSGPP------VSSTWQPSRSQKPQARKGEFERFARMPRNELYDALFERFKE 271
Query: 206 QPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKS 254
+P+W+LK+L T QP +LKE+L E+ ++ G G + LK Y S
Sbjct: 272 KPDWSLKELRARTQQPEAYLKEVLAEVATLHRSGEKVGLWTLKTNYSSS 320
>gi|71017955|ref|XP_759208.1| hypothetical protein UM03061.1 [Ustilago maydis 521]
gi|46098829|gb|EAK84062.1| hypothetical protein UM03061.1 [Ustilago maydis 521]
Length = 432
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 11/119 (9%)
Query: 144 RQIQVIDN-DHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEV----------KRTRRDR 192
R I+++D+ D G H + G+ G ++++ K + A + K R +
Sbjct: 258 RTIKMLDSTDTGRHNMLVAGVGGGLANSQKSRFNAAIASKPSKSGSGGASSTEKFARMPK 317
Query: 193 GELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEY 251
EL D++F LFER W+LK+L ET QP +LKE L + +KRG G + LKPEY
Sbjct: 318 NELLDMLFGLFERWQYWSLKKLRTETQQPESYLKETLLGIADLHKRGPYVGNWSLKPEY 376
>gi|403215585|emb|CCK70084.1| hypothetical protein KNAG_0D03370 [Kazachstania naganishii CBS
8797]
Length = 382
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 76/154 (49%), Gaps = 4/154 (2%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQ-IQVIDNDHGVHMRPMPGM 163
K ++ G V H+ + P N Y ++ R N N++ I +D GV M GM
Sbjct: 188 KTSISGTVCHECQVMP-SMNDPNYHKIVEARRNIVKHNNKERITTLDGTVGVTM-SHTGM 245
Query: 164 VGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQ 223
+ S +SK K + + K R + E+ D +FKLF+ W+LK L + T QP
Sbjct: 246 -SMKSDSSKFLKVGREKTKNNTKSIRMPKKEILDYLFKLFDEYDYWSLKGLKERTKQPEA 304
Query: 224 FLKEILNELCVYNKRGTNQGTYELKPEYKKSVED 257
LKE L+++ + K+G Y LKPEYKK E+
Sbjct: 305 HLKECLDKVAILVKKGPYAFKYTLKPEYKKLKEE 338
>gi|387594063|gb|EIJ89087.1| hypothetical protein NEQG_00906 [Nematocida parisii ERTm3]
gi|387595736|gb|EIJ93359.1| hypothetical protein NEPG_01701 [Nematocida parisii ERTm1]
Length = 219
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 184 EVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQG 243
E KR R + E+ DI+F+ FE P W++K L + QP +++E+L ++ V NK+ T++
Sbjct: 149 EKKRERLSKTEVMDIIFRAFEEYPYWSVKDLADRSGQPLAYIQELLPDIAVLNKK-THRN 207
Query: 244 TYELKPEYK 252
YELKPEYK
Sbjct: 208 MYELKPEYK 216
>gi|242820387|ref|XP_002487500.1| transcription initiation factor iif, beta subunit [Talaromyces
stipitatus ATCC 10500]
gi|218713965|gb|EED13389.1| transcription initiation factor iif, beta subunit [Talaromyces
stipitatus ATCC 10500]
Length = 363
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 9/153 (5%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVID--NDHGVHMRPMP- 161
+ A+ GKV +F+ P E EY R+ + K++ ++++ID G ++R +
Sbjct: 179 QTALVGKVADEFNCMPVEN--AEYQRISEAKALKALEPREKVRLIDLRQHKGPNVREVAA 236
Query: 162 GMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
G VG +K K + E K TRR+R L D +F LF +W + T+QP
Sbjct: 237 GTVGGFVQQAKPAK----ARTQENKATRRERNVLLDEIFGLFREYSHWKFADIKARTNQP 292
Query: 222 AQFLKEILNELCVYNKRGTNQGTYELKPEYKKS 254
Q+LKE L + + G T+ELKPE +++
Sbjct: 293 EQYLKETLEMVAHLVRTGDFAMTWELKPEAREA 325
>gi|432112403|gb|ELK35198.1| General transcription factor IIF subunit 2 [Myotis davidii]
Length = 187
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 47/72 (65%)
Query: 181 KQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGT 240
K+ + KR R D+ + D++F FE+ + LK LV T QP +LKEIL E+ + N +G
Sbjct: 107 KKEDGKRARADKQYVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGIQNVKGI 166
Query: 241 NQGTYELKPEYK 252
++ T+ELKPEY+
Sbjct: 167 HKNTWELKPEYR 178
>gi|358056590|dbj|GAA97559.1| hypothetical protein E5Q_04237 [Mixia osmundae IAM 14324]
Length = 399
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 2/144 (1%)
Query: 110 GKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISS 169
G+V H+ +P ++ + Y + R+R + R +Q ++ D R G + L S
Sbjct: 180 GRVAHECQARPDFES-DVYRAIIRKRIEVAEKPKRVVQALNEDMATSNRLASGALRLKQS 238
Query: 170 -NSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEI 228
+ KA+P + K R R E+ D + LF W+L+ + + QP +LKEI
Sbjct: 239 LMTPSLVKARPKTAADQKLARAPRAEVTDQIMALFSTHEYWSLRNIKERIAQPDAWLKEI 298
Query: 229 LNELCVYNKRGTNQGTYELKPEYK 252
+ ++ + N G G Y L P +K
Sbjct: 299 MTDVAIMNASGPYAGLYSLAPAFK 322
>gi|212545717|ref|XP_002153012.1| transcription initiation factor iif, beta subunit [Talaromyces
marneffei ATCC 18224]
gi|210064532|gb|EEA18627.1| transcription initiation factor iif, beta subunit [Talaromyces
marneffei ATCC 18224]
Length = 364
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 76/152 (50%), Gaps = 7/152 (4%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVID--NDHGVHMRPMPG 162
+ A+ GKV +F+ P E EY R+ + K++ ++++ID G ++R +
Sbjct: 179 QTALVGKVADEFNCMPVEN--AEYQRISEAKALKALEPKEKVRLIDLRQHKGPNVREV-- 234
Query: 163 MVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPA 222
G + + K +P Q E K TRR+R L D +F LF +W + T+QP
Sbjct: 235 AAGTVGGFVQQAKPLKPRTQ-ENKATRRERNVLLDEIFGLFREYSHWKFADIKARTNQPE 293
Query: 223 QFLKEILNELCVYNKRGTNQGTYELKPEYKKS 254
Q+LKE L + + G T+ELKPE +++
Sbjct: 294 QYLKETLEMVAHLVRTGDFAMTWELKPEARET 325
>gi|410080956|ref|XP_003958058.1| hypothetical protein KAFR_0F03270 [Kazachstania africana CBS 2517]
gi|372464645|emb|CCF58923.1| hypothetical protein KAFR_0F03270 [Kazachstania africana CBS 2517]
Length = 389
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 75/154 (48%), Gaps = 4/154 (2%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQ-IQVIDNDHGVHMRPMPGM 163
K + G V H+ + P N Y ++ +R N N++ I +D GV M GM
Sbjct: 191 KTTITGTVCHECQVMP-SMNDPNYHKIVEQRRNLVKYNNKERITTLDQTVGVTM-SHTGM 248
Query: 164 VGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQ 223
+ S S K + ++ +K R + E+ D +FKLF+ W+LK L + T QP
Sbjct: 249 -SMKSDTSTFLKVGREKAKSNIKSIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQPEA 307
Query: 224 FLKEILNELCVYNKRGTNQGTYELKPEYKKSVED 257
LKE L+++ K+G Y LKPEYKK E+
Sbjct: 308 HLKECLDKVATLVKKGPYAFKYTLKPEYKKLKEE 341
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAV 73
+LD ++++R +WL++ P+ +A+ W+++ ++ Q + K+ ++ D + +
Sbjct: 38 DLDLSRSNRQIWLVRLPMFLAEKWRDR-NNLHGQELGKIRIN-----KDGSKIKLVLNEN 91
Query: 74 SNDSLNRPKSYSLNMFKDFVPMS-VFSESN 102
NDS+ P Y L + K V VF+E N
Sbjct: 92 DNDSI--PHEYDLELTKKVVENEYVFTEQN 119
>gi|50287833|ref|XP_446346.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525653|emb|CAG59270.1| unnamed protein product [Candida glabrata]
Length = 395
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 78/156 (50%), Gaps = 8/156 (5%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKN---RQIQVIDNDHGVHMRPMP 161
K ++ G V H+ + P N Y ++ +R N ++KN +I +D GV M
Sbjct: 205 KTSIVGTVCHECQVMP-SMNDPNYHKIVEQRRN--IVKNSNKEKIVTLDETVGVTM-SHT 260
Query: 162 GMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
GM + S NS K + + +K R + E+ D +FKLF+ W+LK L + T QP
Sbjct: 261 GM-SMRSDNSNFLKVGREKAKNNIKSIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQP 319
Query: 222 AQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVED 257
LKE L+++ K+G Y L+PEYKK E+
Sbjct: 320 EAHLKECLDKVATLVKKGPYAFKYTLRPEYKKLKEE 355
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAV 73
+LD +K+ R VWL++ P+ +A+ W+++ ++ Q + K+ + D + +
Sbjct: 52 DLDLSKSKRQVWLVRLPMFLAERWRDR-NNLHGQQLGKI-----KINQDGSKIKLMLDEN 105
Query: 74 SNDSLNRPKSYSLNMFKDFVPMS-VFSESNQGK 105
ND++ P Y L + K V VF+E N K
Sbjct: 106 DNDAI--PHEYDLELTKKIVENEYVFTEQNLKK 136
>gi|254585803|ref|XP_002498469.1| ZYRO0G11022p [Zygosaccharomyces rouxii]
gi|238941363|emb|CAR29536.1| ZYRO0G11022p [Zygosaccharomyces rouxii]
Length = 388
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 128/312 (41%), Gaps = 76/312 (24%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAV 73
+LD +++R VWL++ P+ +A+ W+++ + Q + K+ ++ D +Q ++
Sbjct: 47 DLDLNQSNRQVWLVRLPMFLAEKWRDRNNIH-GQQLGKIRINKD---GSKIQLVLDEN-- 100
Query: 74 SNDSLNRPKSYSLNMFKDFVPMS-VFSESN----------------QGKVAMEGKVEHKF 116
NDS+ P Y L + K V VF+E N + K A + K E +
Sbjct: 101 DNDSI--PHQYDLELTKKVVENEFVFTEQNLRKYQQRVRELATDPEKQKQAFQRKQEREE 158
Query: 117 DMKPHEKNMEE----------------------------------YGRLCRE-------- 134
++K ++ ++ G +C E
Sbjct: 159 ELKRRQQQLKRRNNRKKFNHRVMTDRDGRDRYIPYVKTIPKKTSITGTVCHECQVMPSMN 218
Query: 135 RTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISS---------NSKDKKKAQPVKQTEV 185
N I ++ +I N++ + + VG+ S NS K + ++
Sbjct: 219 DPNYHKIVEQRRNLIKNNNKERITTLDETVGVTMSHTGMSMRGDNSNFLKVGREKAKSNT 278
Query: 186 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTY 245
K R + E+ D +FKLF+ W+LK L + T QP LKE L+++ K+G Y
Sbjct: 279 KSIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQPEAHLKECLDKVATLVKKGPYAFKY 338
Query: 246 ELKPEYKKSVED 257
L+PEYK+ E+
Sbjct: 339 TLRPEYKRLKEE 350
>gi|358394163|gb|EHK43564.1| hypothetical protein TRIATDRAFT_167360, partial [Trichoderma
atroviride IMI 206040]
Length = 373
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 10/161 (6%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
K + GK+ ++D++ +N+ E L +R + ++Q+I + + PG
Sbjct: 194 KTKIFGKI--RYDLRVEPRNLREEEELLAKRIFDAENSKTKLQIISRNKASSII-NPGAT 250
Query: 165 GLISSNSKDKKKAQPV---KQTEV-KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQ 220
G +S K A P K+ E+ K TR + +L D++F F + W++K L Q T Q
Sbjct: 251 GSVSWGGNFIKNAAPTTKPKKGEILKATRIPKNQLLDLIFDCFRQYQYWSMKALRQRTQQ 310
Query: 221 PAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDGGAD 261
P +L+++L E+ V NK G Y L Y+ + GG D
Sbjct: 311 PDSYLRQVLEEVAVLNKSGPFANHYCLSEAYR---DKGGND 348
>gi|358332274|dbj|GAA31513.2| transcription initiation factor TFIIF subunit beta [Clonorchis
sinensis]
Length = 330
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 72/140 (51%), Gaps = 8/140 (5%)
Query: 121 HEKNMEEYGRL-----CRERTNKS--MIKNRQIQVIDN-DHGVHMRPMPGMVGLISSNSK 172
+ + + +GR+ CR N M+K +Q++ I+ H V + P +N
Sbjct: 176 YSRRLSLFGRVNSRAECRPPPNTRYMMLKAQQMKEINRPKHEVRLLYEPVRNYKPVANHI 235
Query: 173 DKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNEL 232
+ + K+ E K RR++ ++ +FK FER + ++ L+ T QP +L EIL E+
Sbjct: 236 SNIEYEARKRAEGKNLRREKDDVMQDLFKAFERHQYYTIRDLILLTKQPVTYLTEILKEI 295
Query: 233 CVYNKRGTNQGTYELKPEYK 252
++N R ++ +ELKPEY+
Sbjct: 296 AIFNPRAPHKNMWELKPEYR 315
>gi|350645052|emb|CCD60234.1| transcription initiation factor iif (tfiif),beta subunit-related
[Schistosoma mansoni]
Length = 335
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 126/300 (42%), Gaps = 62/300 (20%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQ------------ASSQDSQ-----PVAKVILSLD 57
+DT++A VWL+K P +A+ W N +S+ SQ P ++V L D
Sbjct: 22 VDTSRAKDGVWLVKVPKYLAELWHNAGSDGVVGKVVIASSTSASQNGNKGPGSQVTLVTD 81
Query: 58 P-----------LQSDSMQFTMETTAVSNDSLN--RP----KSYSLNMFKDFVP---MSV 97
L QF ++T+A SN + RP S ++ + + +
Sbjct: 82 SELLNQVGESGNLIPKEHQFLIQTSASSNSTPGTVRPGQTTPSSTVQRRTGAISGQELII 141
Query: 98 FSESNQG--------------KVAMEGKVEHKFDMKPH---EKNMEEYGRL-----CRER 135
E + G + F KP+ + + +GR+ CR
Sbjct: 142 LCEDDLGCAQTNSFPSSTSNTTLTSSAAPPSPFSNKPYARYSRRLSLFGRVNSRAECRPP 201
Query: 136 TNKS--MIKNRQIQVIDND-HGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDR 192
N M+K +Q++ + H V + P SN + + + K+ E K RR++
Sbjct: 202 PNTRYMMLKAQQLKAKNRPRHEVCLLYEPVRNYKPVSNHVNNIEYENRKKVEGKNLRREK 261
Query: 193 GELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK 252
++ +FK FER +++K LV T QP +L EIL E+ ++N ++ +ELKPEY+
Sbjct: 262 EDVLQDLFKAFERHQYYSIKDLVVLTKQPLAYLTEILKEIAIFNTHIPHKNMWELKPEYR 321
>gi|256070160|ref|XP_002571412.1| transcription initiation factor iif (tfiif) beta subunit-related
[Schistosoma mansoni]
Length = 335
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 126/300 (42%), Gaps = 62/300 (20%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQ------------ASSQDSQ-----PVAKVILSLD 57
+DT++A VWL+K P +A+ W N +S+ SQ P ++V L D
Sbjct: 22 VDTSRAKDGVWLVKVPKYLAELWHNAGSDGVVGKVVIASSTSASQNGNKGPGSQVTLVTD 81
Query: 58 P-----------LQSDSMQFTMETTAVSNDSLN--RP----KSYSLNMFKDFVP---MSV 97
L QF ++T+A SN + RP S ++ + + +
Sbjct: 82 SELLNQVGESGNLIPKEHQFLIQTSASSNSTPGTVRPGQTTPSSTVQRRTGAISGQELII 141
Query: 98 FSESNQG--------------KVAMEGKVEHKFDMKPH---EKNMEEYGRL-----CRER 135
E + G + F KP+ + + +GR+ CR
Sbjct: 142 LCEDDLGCAQTNSFPSSTSNTTLTSSAAPPSPFSNKPYARYSRRLSLFGRVNSRAECRPP 201
Query: 136 TNKS--MIKNRQIQVIDND-HGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDR 192
N M+K +Q++ + H V + P SN + + + K+ E K RR++
Sbjct: 202 PNTRYMMLKAQQLKAKNRPRHEVCLLYEPVRNYKPVSNHVNNIEYENRKKVEGKNLRREK 261
Query: 193 GELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK 252
++ +FK FER +++K LV T QP +L EIL E+ ++N ++ +ELKPEY+
Sbjct: 262 EDVLQDLFKAFERHQYYSIKDLVVLTKQPLAYLTEILKEIAIFNTHIPHKNMWELKPEYR 321
>gi|388580343|gb|EIM20658.1| transcription initiation factor IIF, beta subunit [Wallemia sebi
CBS 633.66]
Length = 313
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 106/256 (41%), Gaps = 32/256 (12%)
Query: 24 VWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAVSNDSLNRPKS 83
VWL+K P + + W+N QD+ + +L +S++ + + + P+
Sbjct: 38 VWLIKIPKFLKERWEN--VDQDALELG----TLRVFNDNSVKVILPNQQYDQLTPDLPRE 91
Query: 84 YSLNMFKDFVPMS-VFSE------------SNQGKVA---------MEGKVEHKFDMKPH 121
Y+LN+ K S VF+E +N G + GK+ H+ + P
Sbjct: 92 YTLNVHKHTSDNSYVFAEKESEITQEQQNVANSGAFTKINPPINTKLSGKIHHEGSLIPD 151
Query: 122 EKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVK 181
+ Y + ++R + R ++++ + + SS K K Q
Sbjct: 152 LN--DSYKHIMKQRQQSASQPKRTAKILEPE-DTKLASGFNTASRFSSFIKTDKSKQKGA 208
Query: 182 QTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 241
Q E + R R EL D++F LFERQ W ++ L T QP +LKE L + +G
Sbjct: 209 QFE-RAARMPRNELLDLLFSLFERQKYWNMRDLRSRTQQPLTYLKETLMTIAHLANKGPY 267
Query: 242 QGTYELKPEYKKSVED 257
G + L+ Y++ D
Sbjct: 268 HGHWYLQDVYQREHHD 283
>gi|403168797|ref|XP_003328399.2| hypothetical protein PGTG_09693 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375167664|gb|EFP83980.2| hypothetical protein PGTG_09693 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 357
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 11/149 (7%)
Query: 108 MEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLI 167
+ G + H+ + P + Y + R R K+ R I+ ++ D G R M +
Sbjct: 153 LSGTIAHECQVAPVLDD--NYRAVMRARQQKAAQPKRTIKRVNQDLGTLNR----MASGV 206
Query: 168 SSNSKDKKKAQPVK-----QTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPA 222
+++++ K A + Q K TR R EL D +F F R WA K L +T QP
Sbjct: 207 TTHAQASKFAAFTRSVTKPQGTEKFTRMPRTELMDTLFANFLRYDYWATKSLRAQTKQPE 266
Query: 223 QFLKEILNELCVYNKRGTNQGTYELKPEY 251
+LKE+L E+ K G G + LKP+Y
Sbjct: 267 AYLKEVLTEIATLLKAGPYVGHWVLKPQY 295
>gi|308471818|ref|XP_003098139.1| hypothetical protein CRE_11367 [Caenorhabditis remanei]
gi|308269480|gb|EFP13433.1| hypothetical protein CRE_11367 [Caenorhabditis remanei]
Length = 268
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 121/259 (46%), Gaps = 34/259 (13%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQN---------QASSQDSQPVAKVILSLDPLQSDSM 64
++D A RS+WL+K P +++ W+ Q +Q AK ++ P + +
Sbjct: 12 DVDCELAKRSIWLVKVPRYLSELWEANEGHVVGKLQIGAQVEFLTAKGLIQPTP-KDEGE 70
Query: 65 QFTMETTAVSNDSLNRPKSYSLNMFKDFV--PMSVFSESNQ----------GKVAMEGKV 112
+ +A + ++ P YS + D MSV SE Q G++A+EG++
Sbjct: 71 GTSAAASATNAEASEIPTQYSF-ILHDVKSQTMSVLSEDKQALGSEATVKTGRLAIEGRI 129
Query: 113 EHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSK 172
K + +P + +Y ++ K+ + +++ID V +P +S +++
Sbjct: 130 IKKAECRPPATS--KYMKMKLAHIVKNTQPKKTVKMIDKA-AVKFKP-------VSVHAE 179
Query: 173 DKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNEL 232
D K++ K+ K R DR L +FK FE+ + L+ L Q QP ++KE+L E+
Sbjct: 180 DMIKSKQ-KKDGAKTYRADRDVLRQALFKAFEKHSFYRLQDLQQLLQQPVSYVKEVLQEI 238
Query: 233 CVYNKRGTNQGTYELKPEY 251
VYN ++ + LKPEY
Sbjct: 239 AVYNTAPPHKSLWCLKPEY 257
>gi|378755987|gb|EHY66012.1| hypothetical protein NERG_00708 [Nematocida sp. 1 ERTm2]
Length = 220
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 86/175 (49%), Gaps = 12/175 (6%)
Query: 79 NRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNK 138
N P+ + + ++ + F + G ++G + + KP K EY + RER
Sbjct: 53 NFPREWIIEPLENKTGIFTFVQKPHGAF-IDGVITDEVYAKP--KITPEYLKYKRERNAA 109
Query: 139 SMIKNRQIQVIDN-DHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELED 197
IK ++ +D+ G+ M G + +K+ + + E KR R + E+ D
Sbjct: 110 QNIKA-DVKAVDSLKEGIRME----RYGATEYDLMARKRKKML--MEKKRERLSKTEVMD 162
Query: 198 IMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK 252
I+F+ FE P W++K L + QP +++E+L + V NK+ ++ YELKPEYK
Sbjct: 163 ILFRAFEEYPYWSVKDLADRSGQPLAYIQELLPGIAVLNKKA-HRNMYELKPEYK 216
>gi|320582620|gb|EFW96837.1| transcription initiation factor TFIIF middle subunit [Ogataea
parapolymorpha DL-1]
Length = 406
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 88/181 (48%), Gaps = 4/181 (2%)
Query: 80 RPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRE-RTNK 138
R + Y F++ + F+++ K A+ GK+ H+ + P + + +L + R
Sbjct: 190 RGRGYEEENFEEPKKVVPFAKTIPKKTALVGKIVHECQVIPTKLSTNNKLKLLEQKRRLA 249
Query: 139 SMIKNRQIQVI-DNDHGV-HMRPMPGM-VGLISSNSKDKKKAQPVKQTEVKRTRRDRGEL 195
M K + I + D + GV R P + G S++ + ++ E + +R DR L
Sbjct: 250 QMTKRKTITYMKDANAGVLQGRTGPNLQTGSTIQLSRELAARKEQQRLEGRASRMDREHL 309
Query: 196 EDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSV 255
++F LF W LK + ++T+QP +LK+ L + V ++GT Y LK EYKKS
Sbjct: 310 MKVLFNLFNEYDYWTLKGIREKTNQPEAYLKDCLENIAVMERKGTYALKYRLKDEYKKSR 369
Query: 256 E 256
E
Sbjct: 370 E 370
>gi|365991739|ref|XP_003672698.1| hypothetical protein NDAI_0K02640 [Naumovozyma dairenensis CBS 421]
gi|343771474|emb|CCD27455.1| hypothetical protein NDAI_0K02640 [Naumovozyma dairenensis CBS 421]
Length = 418
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 4/154 (2%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQ-IQVIDNDHGVHMRPMPGM 163
K A+ G V H+ + P N Y ++ +R N N++ I + GV M GM
Sbjct: 216 KTAIVGTVCHECQVMP-SMNDPNYHKIVEQRRNIVKTNNKERITTLAETVGVTM-SHTGM 273
Query: 164 VGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQ 223
+ S S K + ++ +K R + E+ D +FKLF+ W+LK L + T QP
Sbjct: 274 -SMRSDTSNFLKVGREKAKSNIKSIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQPEA 332
Query: 224 FLKEILNELCVYNKRGTNQGTYELKPEYKKSVED 257
LKE L+++ + K+G Y L+PEYKK E+
Sbjct: 333 HLKECLDKVAILVKKGPYAFKYTLRPEYKKLKEE 366
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 9/90 (10%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAV 73
+LD ++++R VWL++ P+ +A++W+++ ++ Q + K+ ++ D + +
Sbjct: 63 DLDLSRSNRQVWLVRLPMFLAETWRDR-NNLHGQELGKIRIN-----KDGSKIKLILNEN 116
Query: 74 SNDSLNRPKSYSLNMFKDFVPMS-VFSESN 102
ND++ P Y L + K V VF+E N
Sbjct: 117 ENDTI--PHEYDLELTKKIVENEYVFTEQN 144
>gi|149248558|ref|XP_001528666.1| hypothetical protein LELG_01186 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448620|gb|EDK43008.1| hypothetical protein LELG_01186 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 403
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 84/169 (49%), Gaps = 12/169 (7%)
Query: 89 FKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIK---NRQ 145
+ ++P F ++ K ++ GKV H + P +N Y L ++R +S++K +
Sbjct: 208 IRKYIP---FVKTIPKKTSLLGKVCHDCTVVPL-RNDSSYAELLKKR--ESLVKAPERPK 261
Query: 146 IQVIDNDHGV-HMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFE 204
+ +++ GV P + G ++ S K QP ++E + R R +L D++F+ FE
Sbjct: 262 VTLLNEIPGVIQSNAGPSIKG--NNTSVFLKSTQPKSKSEGRAIRMPRKDLLDLLFRCFE 319
Query: 205 RQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKK 253
W++K L + T QP +LKE L + K+G + LK EYKK
Sbjct: 320 EYEYWSIKGLKERTKQPESYLKESLESIATLIKKGPYTSKWALKAEYKK 368
>gi|157830215|pdb|1BBY|A Chain A, Dna-Binding Domain From Human Rap30, Nmr, Minimized
Average
gi|157834686|pdb|2BBY|A Chain A, Dna-Binding Domain From Human Rap30, Nmr, 30 Structures
Length = 69
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 42/65 (64%)
Query: 188 TRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYEL 247
R D+ + D++F FE+ + LK LV T QP +LKEIL E+ V N +G ++ T+EL
Sbjct: 2 ARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHKNTWEL 61
Query: 248 KPEYK 252
KPEY+
Sbjct: 62 KPEYR 66
>gi|76154945|gb|AAX26335.2| SJCHGC05520 protein [Schistosoma japonicum]
Length = 322
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 71/304 (23%), Positives = 122/304 (40%), Gaps = 62/304 (20%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQ-----------ASSQDSQ------PVAKVILSLD 57
+DT++A VWL+K P +A+ W N ASS + P ++V L D
Sbjct: 15 VDTSRAKDGVWLVKVPKYLAELWHNAGPDGVVGKVVIASSSNVSRNGNKGPGSQVTLVTD 74
Query: 58 P-----------LQSDSMQFTMETTAVSNDSLN--RPKSYSLNMFKDFVP-------MSV 97
L QF ++T+ SN + RP + + P + +
Sbjct: 75 SELLNQSGESGNLIPKEHQFLIQTSTSSNSATGTARPGQNTPGLTSQRRPGAVSGQELII 134
Query: 98 FSESNQGKVAMEGKVEHKFDM--------------KPHEK---NMEEYGRL-----CRER 135
E + + KPH + + +GR+ CR
Sbjct: 135 LCEDDLACAQVNSFSSSTSSTTLVSSASPPSPFSNKPHSRYSRRLSLFGRVNSRAECRPP 194
Query: 136 TNKS--MIKNRQIQVIDND-HGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDR 192
N M+K +Q++ + H V + P +N + + + ++ E K RR++
Sbjct: 195 PNTRYMMLKAQQLKAKNRPRHEVCLLYEPVRNYKPVANHTNNIEYENRRKAEGKNLRREK 254
Query: 193 GELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK 252
++ +FK FER +++K LV T QP +L EIL E+ ++N ++ +ELKPEY+
Sbjct: 255 EDVLQDLFKAFERHQYYSIKDLVVLTKQPLAYLTEILKEIAIFNTHIPHKNMWELKPEYR 314
Query: 253 KSVE 256
E
Sbjct: 315 HYTE 318
>gi|226471062|emb|CAX70612.1| general transcription factor IIF, polypeptide 2 [Schistosoma
japonicum]
gi|226487346|emb|CAX75536.1| general transcription factor IIF, polypeptide 2 [Schistosoma
japonicum]
Length = 335
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 71/304 (23%), Positives = 122/304 (40%), Gaps = 62/304 (20%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQ-----------ASSQDSQ------PVAKVILSLD 57
+DT++A VWL+K P +A+ W N ASS + P ++V L D
Sbjct: 22 VDTSRAKDGVWLVKVPKYLAELWHNAGPDGVVGKVVIASSSNVSRNGNKGPGSQVTLVTD 81
Query: 58 P-----------LQSDSMQFTMETTAVSNDSLN--RPKSYSLNMFKDFVP-------MSV 97
L QF ++T+ SN + RP + + P + +
Sbjct: 82 SELLNQSGESGNLIPKEHQFLIQTSTSSNSATGTARPGQNTPGLTSQRRPGAVSGQELII 141
Query: 98 FSESNQGKVAMEGKVEHKFDM--------------KPHEK---NMEEYGRL-----CRER 135
E + + KPH + + +GR+ CR
Sbjct: 142 LCEDDLACAQVNSFSSSTSSTTLVSSASPPSPFSNKPHSRYSRRLSLFGRVNSRAECRPP 201
Query: 136 TNKS--MIKNRQIQVIDND-HGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDR 192
N M+K +Q++ + H V + P +N + + + ++ E K RR++
Sbjct: 202 PNTRYMMLKAQQLKAKNRPRHEVCLLYEPVRNYKPVANHTNNIEYENRRKAEGKNLRREK 261
Query: 193 GELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK 252
++ +FK FER +++K LV T QP +L EIL E+ ++N ++ +ELKPEY+
Sbjct: 262 EDVLQDLFKAFERHQYYSIKDLVVLTKQPLAYLTEILKEIAIFNTHIPHKNMWELKPEYR 321
Query: 253 KSVE 256
E
Sbjct: 322 HYTE 325
>gi|226487338|emb|CAX75534.1| general transcription factor IIF, polypeptide 2 [Schistosoma
japonicum]
Length = 335
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 71/304 (23%), Positives = 122/304 (40%), Gaps = 62/304 (20%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQ-----------ASSQDSQ------PVAKVILSLD 57
+DT++A VWL+K P +A+ W N ASS + P ++V L D
Sbjct: 22 VDTSRAKDGVWLVKVPKYLAELWHNAGPDGVVGKVVIASSSNVSRNGNKGPGSQVTLVTD 81
Query: 58 P-----------LQSDSMQFTMETTAVSNDSLN--RPKSYSLNMFKDFVP-------MSV 97
L QF ++T+ SN + RP + + P + +
Sbjct: 82 SELLNQSGESGNLIPKEHQFLIQTSTSSNSATGTARPGQNTPGLTSQRRPGAVSGQELII 141
Query: 98 FSESNQGKVAMEGKVEHKFDM--------------KPH---EKNMEEYGRL-----CRER 135
E + + KPH + + +GR+ CR
Sbjct: 142 LCEDDLACAQVNSFSSSTSSTTLVSSASPPSPFSNKPHYRYSRRLSLFGRVNSRAECRPP 201
Query: 136 TNKS--MIKNRQIQVIDND-HGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDR 192
N M+K +Q++ + H V + P +N + + + ++ E K RR++
Sbjct: 202 PNTRYMMLKAQQLKAKNRPRHEVCLLYEPVRNYKPVANHTNNIEYENRRKAEGKNLRREK 261
Query: 193 GELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK 252
++ +FK FER +++K LV T QP +L EIL E+ ++N ++ +ELKPEY+
Sbjct: 262 EDVLQDLFKAFERHQYYSIKDLVVLTKQPLAYLTEILKEIAIFNTHIPHKNMWELKPEYR 321
Query: 253 KSVE 256
E
Sbjct: 322 HYTE 325
>gi|226487340|emb|CAX75535.1| general transcription factor IIF, polypeptide 2 [Schistosoma
japonicum]
Length = 335
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 72/304 (23%), Positives = 124/304 (40%), Gaps = 62/304 (20%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQ-----------ASSQDSQ------PVAKVILSLD 57
+DT++A VWL+K P +A+ W N ASS + P ++V L D
Sbjct: 22 VDTSRAKDGVWLVKVPKYLAELWHNAGPDGVVGKVVIASSSNVSRNGNKGPGSQVTLVTD 81
Query: 58 P-----------LQSDSMQFTMETTAVSNDSLN--RPKSYSLNMFKDFVPMSVFSE---- 100
L QF ++T+ SN + RP + + P +V +
Sbjct: 82 SELLNQSGESGNLIPKEHQFLIQTSTSSNSATGTARPGQNTPGLTSQRRPGAVSGQELII 141
Query: 101 -----------------SNQGKVAMEGKVEHKFDMKPHEK---NMEEYGRL-----CRER 135
++ + F KPH + + +GR+ CR
Sbjct: 142 LCEDELACAQVNSFSSSTSSTTLVSSASPPSPFSNKPHSRYSRRLSLFGRVNSRAECRPP 201
Query: 136 TNKS--MIKNRQIQVIDND-HGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDR 192
N M+K +Q++ + H V + P +N + + + ++ E K RR++
Sbjct: 202 PNTRYMMLKAQQLKAKNRPRHEVCLLYEPVRNYKPVANHTNNIEYENRRKAEGKNLRREK 261
Query: 193 GELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK 252
++ +FK FER +++K LV T QP +L EIL E+ ++N ++ +ELKPEY+
Sbjct: 262 EDVLQDLFKAFERHQYYSIKDLVVLTKQPLAYLTEILKEIAIFNTHIPHKNMWELKPEYR 321
Query: 253 KSVE 256
E
Sbjct: 322 HYTE 325
>gi|358387418|gb|EHK25013.1| hypothetical protein TRIVIDRAFT_128281, partial [Trichoderma virens
Gv29-8]
Length = 368
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 10/161 (6%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
K + GK+ ++D++ +N+ E L +R + ++Q+I + + PG
Sbjct: 189 KTKIFGKI--RYDLRVEPRNLREEEELLAKRIFEVENSKSKLQIISRNKASSII-NPGSA 245
Query: 165 GLISSNSKDKKKA----QPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQ 220
G +S K A +P K +K TR + +L D++F F + W++K L Q T Q
Sbjct: 246 GSVSWGGNFIKNAPSTVKPKKGEILKATRIPKNQLLDLIFDCFRQYQYWSMKALRQRTQQ 305
Query: 221 PAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDGGAD 261
P +L+++L E+ V NK G Y L Y+ + GG D
Sbjct: 306 PDSYLRQVLEEVAVLNKSGPFANHYCLSEAYR---DKGGND 343
>gi|367013210|ref|XP_003681105.1| hypothetical protein TDEL_0D03100 [Torulaspora delbrueckii]
gi|359748765|emb|CCE91894.1| hypothetical protein TDEL_0D03100 [Torulaspora delbrueckii]
Length = 399
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 12/154 (7%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEE--YGRLCRERTNKSMIKN---RQIQVIDNDHGVHMRP 159
K ++ G V H+ + P +M++ Y ++ +R N ++KN +I +D GV M
Sbjct: 202 KTSIVGTVCHECQVMP---SMDDPNYHKIVEQRRN--IVKNYNKERITTLDQTVGVTM-S 255
Query: 160 MPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETD 219
GM + S NS K A+ ++ K R + E+ D +FKLF+ W+LK L + T
Sbjct: 256 HTGM-SMRSDNSNFLKVAREKSKSNTKYIRMPKKEILDYLFKLFDEYDYWSLKGLKERTR 314
Query: 220 QPAQFLKEILNELCVYNKRGTNQGTYELKPEYKK 253
QP LK+ L+++ K+G Y L+PEYK+
Sbjct: 315 QPEAHLKDCLDKVATLVKKGPYAFKYTLRPEYKR 348
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAV 73
+LD +K++R VWL++ P+ +A+ W+++ + Q + K+ ++ D + +
Sbjct: 49 DLDLSKSNRQVWLVRLPMFLAEKWRDRNNIH-GQELGKIRIN-----KDGSKIKLVLNEN 102
Query: 74 SNDSLNRPKSYSLNMFKDFVPMS-VFSESNQGK 105
NDS+ P Y L + K V +F+E N K
Sbjct: 103 DNDSI--PHQYDLELTKKVVENEYIFTEQNLKK 133
>gi|367005961|ref|XP_003687712.1| hypothetical protein TPHA_0K01450 [Tetrapisispora phaffii CBS 4417]
gi|357526017|emb|CCE65278.1| hypothetical protein TPHA_0K01450 [Tetrapisispora phaffii CBS 4417]
Length = 403
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 76/154 (49%), Gaps = 4/154 (2%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQ-IQVIDNDHGVHMRPMPGM 163
K ++ G V H+ + P N Y ++ +R N N++ I +D GV M GM
Sbjct: 209 KTSITGTVCHECQVMP-SMNDPNYHKIVEQRRNIVKRNNKETITTLDETVGVTM-SHTGM 266
Query: 164 VGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQ 223
+ S +S K + + VK R + E+ D +FKLF+ W+LK L + T QP
Sbjct: 267 -SMKSDSSNFLKVGREKAKQNVKSIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQPEA 325
Query: 224 FLKEILNELCVYNKRGTNQGTYELKPEYKKSVED 257
LKE L+++ K+G Y L+PEYKK E+
Sbjct: 326 HLKECLDKVATLVKKGPYAFKYTLRPEYKKLKEE 359
>gi|320592141|gb|EFX04580.1| transcription initiation factor beta subunit [Grosmannia clavigera
kw1407]
Length = 389
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 18/171 (10%)
Query: 98 FSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHM 157
F ++ K + G++ H+ + P + EY + ER +M+ Q++ D
Sbjct: 193 FRKAIPKKTTVAGRIRHELNCAPVKNPESEY--ILNERARAAMLPKAQVKFGDAS----- 245
Query: 158 RPMPGMVGL--ISSNS------KDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNW 209
+P ++G I+S+S K + A VK+ E K R +L D++F F R W
Sbjct: 246 KPEFRIIGSGGIASHSYATDFIKTAQTAPKVKKAETKTARMPENDLLDLIFACFARFRFW 305
Query: 210 ALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDGGA 260
+++ L E QP +L++ L ++ ++ G +ELKPE +K DG A
Sbjct: 306 SMRALRAEIPQPEIYLRQTLEKVADLHRSGRFANNWELKPENRK---DGSA 353
>gi|255715141|ref|XP_002553852.1| KLTH0E08646p [Lachancea thermotolerans]
gi|238935234|emb|CAR23415.1| KLTH0E08646p [Lachancea thermotolerans CBS 6340]
Length = 382
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 72/149 (48%), Gaps = 2/149 (1%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
K A+ G V H+ + P + + + + R + + V+D GV M GM
Sbjct: 197 KTAIVGTVCHECHVIPSMSDPNYHKIVEQRRQIVRSVHKPTVTVLDQTPGVTMSNA-GM- 254
Query: 165 GLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQF 224
+ S NS K + + ++ R + EL D +FKLF+ W+LK L + T QP +
Sbjct: 255 SMRSDNSNFLKVGREKAKNNIRAIRMPKKELLDFLFKLFDEYDYWSLKGLKERTKQPEVY 314
Query: 225 LKEILNELCVYNKRGTNQGTYELKPEYKK 253
LKE L+++ + K+G Y LK EYK+
Sbjct: 315 LKECLDQVAILVKKGPYALKYTLKTEYKR 343
>gi|119180086|ref|XP_001241550.1| hypothetical protein CIMG_08713 [Coccidioides immitis RS]
Length = 370
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 115/287 (40%), Gaps = 53/287 (18%)
Query: 13 GNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPL------------- 59
G+LD A A + VWL + P ++ W+N + D + + +SL L
Sbjct: 43 GDLDFANAAQDVWLTRIPKIL---WENWSKLDDDEEIQIGTISLRLLDIPQNEGVPKDYN 99
Query: 60 ------QSDSMQFTMETTAVSND--------------SLNRP--KSYSLNMFK------- 90
+D + ++ T + + + N+P +SY K
Sbjct: 100 LKRQNINADRTAYAVQNTFIFTEKDLPGYKDRAHLLFNENQPHGRSYVYEQMKRDSRKKA 159
Query: 91 ---DFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQ 147
+ P + + Q +A +V +F+ P E EEY R+ +R +++ R+ +
Sbjct: 160 NKKKWEPYTRKTIPKQTAIA--ARVHDEFNCLPVEN--EEYHRIAEKRALEALKPKRETK 215
Query: 148 VIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQP 207
I+ G ++P SN K ++ + K R + EL D+++ F R
Sbjct: 216 FIERVTGKMLQPKTAQAA-DKSNFIQVTKPPKIRTQDNKTARMPQNELLDLIYACFRRYR 274
Query: 208 NWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKS 254
W K L E QP +LK+ L + K G T+ELKPE +++
Sbjct: 275 YWPFKSLKAELKQPEAYLKQTLEMVAHLVKSGDFAMTWELKPEAREA 321
>gi|340516471|gb|EGR46719.1| transcription factor IIF beta subunit [Trichoderma reesei QM6a]
Length = 357
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 10/161 (6%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
K + GK+ ++D++ +N+ E L +R ++ ++Q+I + + PG
Sbjct: 175 KTKIFGKI--RYDLRVEPRNLREEEELLAKRIFEAENSKSKLQIISRNKASSII-NPGSA 231
Query: 165 GLISSNSKDKKKAQPV---KQTEV-KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQ 220
G ++ K A V K+TEV K R + +L D++F F + W++K L Q T Q
Sbjct: 232 GSVNWGGNFIKNAPSVLKPKKTEVLKAARIPKNQLLDLIFDCFRQYQYWSMKALRQRTQQ 291
Query: 221 PAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDGGAD 261
P +L+++L E+ V NK G Y L Y+ + GG D
Sbjct: 292 PDSYLRQVLEEVAVLNKSGPFANHYCLSEAYR---DKGGND 329
>gi|341895421|gb|EGT51356.1| hypothetical protein CAEBREN_08139 [Caenorhabditis brenneri]
Length = 266
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 118/255 (46%), Gaps = 38/255 (14%)
Query: 20 ADRSVWLMKCPLVVAKSWQN---------QASSQDSQPVAKVILSLDPLQ-SDSMQFTME 69
A R +WL+K P +++ W Q +Q AK L+P + D + T
Sbjct: 16 AKRGIWLVKVPRYLSELWDANEGGVVGKLQIGAQVEFHSAK---GLNPPKPKDDGEGTSS 72
Query: 70 TTA-VSNDSLNRPKSYSLNMFKDFV--PMSVFSESNQG----------KVAMEGKVEHKF 116
TTA + +++ P YS + D MS+ SE G K+A+EG++ K
Sbjct: 73 TTAPMPSEASEIPTQYSF-ILNDVRGQTMSLLSEDKTGLGSEAAVKTGKLAIEGRIIKKA 131
Query: 117 DMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKK 176
+ +P + +Y ++ K+ + +++ID V +P +S +++D +
Sbjct: 132 ECRPPATS--KYMKMKLAHIVKNTQPKKTVKMIDKA-AVKFKP-------VSVHAEDMIR 181
Query: 177 AQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYN 236
++ K+ K R DR L +FK FE+ + L+ L Q QP ++KE+L E+ VYN
Sbjct: 182 SK-AKKDGAKTYRADRDVLRQSLFKAFEKHSYYRLQDLQQLLQQPVSYVKEVLQEIAVYN 240
Query: 237 KRGTNQGTYELKPEY 251
++ + LKPEY
Sbjct: 241 TAPPHKSLWCLKPEY 255
>gi|1362632|pir||S55766 transcription initiation factor TFIIF small chain - fruit fly
(Drosophila melanogaster) (fragments)
Length = 165
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 93/211 (44%), Gaps = 48/211 (22%)
Query: 26 LMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAVSNDSLNRPKSYS 85
L+K P +A+ W+ ++ D V K+ ++ P Q + ++ ++ D P+ Y
Sbjct: 1 LVKVPKYIAQKWEKAPTNMD---VGKLRINKTPGQKAQVSLSLTPAVLALD----PEEY- 52
Query: 86 LNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQ 145
MEG++ K + +P N Y +L E K+ R+
Sbjct: 53 ----------------------MEGRIVQKLECRPIADNC--YMKLKLESIRKASEPQRR 88
Query: 146 IQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFER 205
+Q ID I N K+ + + K+ E K+ R D+ + D++F FE+
Sbjct: 89 VQPIDK---------------IVQNFKNIEYRER-KKAEGKKARDDKNAVMDMLFHAFEK 132
Query: 206 QPNWALKQLVQETDQPAQFLKEILNELCVYN 236
+ +K LV+ T+QP +LKEIL ++C YN
Sbjct: 133 HQYYNIKDLVKITNQPISYLKEILKDVCDYN 163
>gi|409049093|gb|EKM58571.1| hypothetical protein PHACADRAFT_253017 [Phanerochaete carnosa
HHB-10118-sp]
Length = 320
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 78/149 (52%), Gaps = 6/149 (4%)
Query: 108 MEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDH----GVHMRPMPGM 163
+ G+V+H+ ++KP + +Y + + R K+ + R I+ I+++H G R G+
Sbjct: 134 LTGRVKHECNLKPMLTD--KYRQRLKMRNLKANMPARTIKRIEDEHPGDRGSINRLTSGV 191
Query: 164 VGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQ 223
K K +P K + R R +L D +F F + +W++KQL + T QP
Sbjct: 192 TNTTGFTDLVKPKPKPPKGQFERMARMPRNQLLDALFIAFREREHWSVKQLRERTQQPEA 251
Query: 224 FLKEILNELCVYNKRGTNQGTYELKPEYK 252
+LKE+L+E+ ++ G + GT+EL +K
Sbjct: 252 YLKEVLSEIAFMHRSGEHNGTWELMANFK 280
>gi|156370365|ref|XP_001628441.1| predicted protein [Nematostella vectensis]
gi|156215417|gb|EDO36378.1| predicted protein [Nematostella vectensis]
Length = 249
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 116/259 (44%), Gaps = 34/259 (13%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPL-QSDSMQFTM----E 69
LD A R VWL+K P ++ W +A S V + ++ D + + + + F E
Sbjct: 5 LDCNGAGRDVWLVKVPKYLSNLWMEKADP--SGIVGTLKINKDQVGKKEKIVFFFASFRE 62
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQG--------KVAMEGKVEHKFDMKPH 121
+ L K L++ ++F SN+ K+A+EG+V + D +P
Sbjct: 63 LEILKKKILPGDKECGLSI-------ALFYGSNKFFNYYYTSEKLAVEGRVVQRADCRPL 115
Query: 122 EKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVK 181
+ +Y R+ + RQ Q + +P+ S+ K + + K
Sbjct: 116 NPS-NDYFLHKRKSIQVASKPARQAQQLKKIVTNAYKPV--------SDHKMNIEYKKKK 166
Query: 182 QTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 241
+ E KR R +++ +F FE+ + LK LV +T QP +LK IL E+ YN + +
Sbjct: 167 KDEGKRARATEEDVKASLFSAFEQHQYYNLKDLVHKTQQPIVYLKSILKEIAQYNTKNPH 226
Query: 242 QGTYELKPEYK---KSVED 257
+ +ELKPEY+ K+ ED
Sbjct: 227 KNMWELKPEYRHYGKNTED 245
>gi|195380583|ref|XP_002049050.1| GJ21374 [Drosophila virilis]
gi|194143847|gb|EDW60243.1| GJ21374 [Drosophila virilis]
Length = 247
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 104/260 (40%), Gaps = 49/260 (18%)
Query: 12 KGNLDTAKADRSVWLMKCPLVVAKSWQN------------QASSQDSQPV-AKVILSLDP 58
K +D +KA R +WL+K P VA+ W+ + S D +P K+ILS
Sbjct: 8 KKKMDMSKASRGIWLVKVPNYVAQMWEQAPNDMQVATMRMEKSGDDKEPAKVKLILS--- 64
Query: 59 LQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDM 118
D MQ + S L K+ K +FS + MEG V HK +
Sbjct: 65 --QDLMQLAPDKLLASEHDLKLCKA-----IKGARLTGIFSTVDDTDSVMEGWVTHKMEC 117
Query: 119 KPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQ 178
P +C N +K +Q + GV RPM L K +
Sbjct: 118 LP----------IC----NAQYLKMKQQSI----RGV--RPMRSAEALNHIVKSYKPVSN 157
Query: 179 PVKQTEVKRTRRD------RGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNEL 232
+ + R+D + + D++F+ FE+ + LK L T Q LK IL ++
Sbjct: 158 HAHNKDDGKRRKDATKVLSKENIMDMLFQAFEKHQYYTLKDLQFITKQSVFVLKAILKDI 217
Query: 233 CVYNKRGTNQGTYELKPEYK 252
Y+K ++ +ELK EY+
Sbjct: 218 GDYSKDPAHRQMWELKEEYR 237
>gi|392866571|gb|EAS27802.2| transcription initiation factor iif [Coccidioides immitis RS]
Length = 382
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 3/150 (2%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
+ A+ +V +F+ P E EEY R+ +R +++ R+ + I+ G ++P
Sbjct: 187 QTAIAARVHDEFNCLPVEN--EEYHRIAEKRALEALKPKRETKFIERVTGKMLQPKTAQA 244
Query: 165 GLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQF 224
SN K ++ + K R + EL D+++ F R W K L E QP +
Sbjct: 245 A-DKSNFIQVTKPPKIRTQDNKTARMPQNELLDLIYACFRRYRYWPFKSLKAELKQPEAY 303
Query: 225 LKEILNELCVYNKRGTNQGTYELKPEYKKS 254
LK+ L + K G T+ELKPE +++
Sbjct: 304 LKQTLEMVAHLVKSGDFAMTWELKPEAREA 333
>gi|226471060|emb|CAX70611.1| general transcription factor IIF, polypeptide 2 [Schistosoma
japonicum]
Length = 304
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 46/76 (60%)
Query: 181 KQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGT 240
++ E K RR++ ++ +FK FER +++K LV T QP +L EIL E+ ++N
Sbjct: 219 RKAEGKNLRREKEDVLQDLFKAFERHQYYSIKDLVVLTKQPLAYLTEILKEIAIFNTHIP 278
Query: 241 NQGTYELKPEYKKSVE 256
++ +ELKPEY+ E
Sbjct: 279 HKNMWELKPEYRHYTE 294
>gi|406866036|gb|EKD19076.1| transcription initiation factor IIF [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 367
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 6/166 (3%)
Query: 98 FSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHM 157
F ++ K + G++ H+ + + +E R+ ERT ++M + I ++ + +
Sbjct: 171 FRKAIPKKTTLAGRIGHEVNCVAVDN--QESQRILAERTLEAMRPKLHTKYIKDEETLGV 228
Query: 158 RPM-PGMVGL---ISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQ 213
+ PG +G +S K K A + K R + EL D +F+ F R W+LK
Sbjct: 229 TFIQPGTMGAQKSFNSFIKTKNPATKERPQMTKTARMPQNELLDRIFECFRRYNYWSLKA 288
Query: 214 LVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDGG 259
L E QP +L+E L+ + V K G G + LKP + DGG
Sbjct: 289 LRNELKQPEVYLRETLDLIAVLAKSGKFTGNWYLKPANRPENYDGG 334
>gi|317139615|ref|XP_001817641.2| transcription initiation factor iif, beta subunit [Aspergillus
oryzae RIB40]
Length = 374
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 9/153 (5%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRP---MP 161
+ A+ G V +F+ P E EE+ L ++ +S+ R+ ID G ++ +P
Sbjct: 180 QTALVGSVSEEFNCLPVEN--EEFRLLSEQKVLQSLKPKRETVFIDKVPGKLLQARHVLP 237
Query: 162 GMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
G G +K K +K E K TR + EL D++++ F W K L QP
Sbjct: 238 GEKGAFVQATKAAK----LKPQENKTTRMPQNELLDLIYQCFREYRYWPFKALKARLRQP 293
Query: 222 AQFLKEILNELCVYNKRGTNQGTYELKPEYKKS 254
+LK+ L + K G T+ELKPE K+S
Sbjct: 294 EAYLKQTLEMIGHLVKSGDFAMTWELKPEAKES 326
>gi|452819715|gb|EME26769.1| transcription initiation factor IIF beta subunit (TFIIF-beta)
family protein [Galdieria sulphuraria]
Length = 306
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 199 MFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK 252
+F+LFER+P W++++L E P LK ++NE+C ++ G +G YELK EYK
Sbjct: 212 LFQLFERKPRWSIRELNNEIQIPTSRLKTVVNEVCQIHRSGPLRGQYELKDEYK 265
>gi|303321147|ref|XP_003070568.1| Transcription initiation factor IIF, beta subunit family protein
[Coccidioides posadasii C735 delta SOWgp]
gi|240110264|gb|EER28423.1| Transcription initiation factor IIF, beta subunit family protein
[Coccidioides posadasii C735 delta SOWgp]
gi|320035964|gb|EFW17904.1| transcription initiation factor iif [Coccidioides posadasii str.
Silveira]
Length = 382
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 3/150 (2%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
+ A+ +V +F+ P E EEY R+ +R +++ R + I+ G ++P
Sbjct: 187 QTAIAARVHDEFNCLPVEN--EEYHRIAEKRALEALKPKRNTKFIERVTGKMLQPKTAQA 244
Query: 165 GLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQF 224
SN K ++ + K R + EL D+++ F R W K L E QP +
Sbjct: 245 A-DKSNFIQVTKPPRIRTQDNKTARMPQNELLDLIYACFRRYRYWPFKSLKAELKQPEAY 303
Query: 225 LKEILNELCVYNKRGTNQGTYELKPEYKKS 254
LK+ L + K G T+ELKPE +++
Sbjct: 304 LKQTLEMVAHLVKSGDFAMTWELKPEAREA 333
>gi|391864707|gb|EIT74001.1| hypothetical protein Ao3042_10034 [Aspergillus oryzae 3.042]
Length = 374
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 9/153 (5%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRP---MP 161
+ A+ G V +F+ P E EE+ L ++ +S+ R+ ID G ++ +P
Sbjct: 180 QTALVGSVSEEFNCLPVEN--EEFRLLSEQKVLQSLKPKRETVFIDKVPGKLLQARHVLP 237
Query: 162 GMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
G G +K K +K E K TR + EL D++++ F W K L QP
Sbjct: 238 GEKGAFVQATKAAK----LKPQENKTTRMPQNELLDLIYQCFREYRYWPFKALKARLRQP 293
Query: 222 AQFLKEILNELCVYNKRGTNQGTYELKPEYKKS 254
+LK+ L + K G T+ELKPE K+S
Sbjct: 294 EAYLKQTLEMIGHLVKSGDFAMTWELKPEAKES 326
>gi|238483049|ref|XP_002372763.1| transcription initiation factor IIF subunit beta, putative
[Aspergillus flavus NRRL3357]
gi|220700813|gb|EED57151.1| transcription initiation factor IIF subunit beta, putative
[Aspergillus flavus NRRL3357]
Length = 374
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 9/153 (5%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRP---MP 161
+ A+ G V +F+ P E EE+ L ++ +S+ R+ ID G ++ +P
Sbjct: 180 QTALVGSVSEEFNCLPVEN--EEFRLLSEQKVLQSLKPKRETVFIDKVPGKLLQARHVLP 237
Query: 162 GMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
G G +K K +K E K TR + EL D++++ F W K L QP
Sbjct: 238 GEKGAFVQATKAAK----LKPQENKTTRMPQNELLDLIYQCFREYRYWPFKALKARLRQP 293
Query: 222 AQFLKEILNELCVYNKRGTNQGTYELKPEYKKS 254
+LK+ L + K G T+ELKPE K+S
Sbjct: 294 EAYLKQTLEMIGHLVKSGDFAMTWELKPEAKES 326
>gi|258577985|ref|XP_002543174.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237903440|gb|EEP77841.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 295
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 3/150 (2%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
+ A+ KV +F+ P E EEY R+ +R +++ ++ + I+ G ++P
Sbjct: 100 QTAIAAKVHDEFNCLPVEN--EEYQRIAEKRALEALKPKKETKFIERVTGKMLQPKTAQ- 156
Query: 165 GLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQF 224
SN K V+ + K TR + EL D+++ F R W K L E QP +
Sbjct: 157 DADKSNFIQVTKPPKVRAQDNKTTRMPQNELLDLVYACFRRYRYWPFKSLKAELKQPEAY 216
Query: 225 LKEILNELCVYNKRGTNQGTYELKPEYKKS 254
LK+ L + K G T+ELKPE +++
Sbjct: 217 LKQTLEMVAHLVKSGDFAMTWELKPEAREA 246
>gi|67522162|ref|XP_659142.1| hypothetical protein AN1538.2 [Aspergillus nidulans FGSC A4]
gi|40745089|gb|EAA64245.1| hypothetical protein AN1538.2 [Aspergillus nidulans FGSC A4]
gi|259486863|tpe|CBF85067.1| TPA: transcription initiation factor iif, beta subunit
(AFU_orthologue; AFUA_8G05490) [Aspergillus nidulans
FGSC A4]
Length = 357
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 118/284 (41%), Gaps = 52/284 (18%)
Query: 13 GNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTA 72
G+LD AD+S+WL + P + W++ + D + +SL +S+ + +
Sbjct: 40 GDLDFTNADQSLWLSRIPRSL---WEHWSKLDDDDEIQIGTVSLRLTESEENRDIPKDYI 96
Query: 73 VSNDSLNRPKSYSLN----MF--KDFVP-----MSVFSESNQG----------------- 104
+S +LN + +F KD +P M F E+
Sbjct: 97 LSRQTLNSENLLHMTQNTYLFTEKD-IPGYENRMVTFGEARSALYESMKRDARRKERKKK 155
Query: 105 -----------KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDH 153
+ A+ G+V+ +F+ P E EE+ L ++ +++ R+++ +D
Sbjct: 156 WEPYIRKTIPKRTALVGQVKEEFNCLPVEN--EEFRILSEKKALEALKPRREVKYVDKMP 213
Query: 154 GVHMR---PMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWA 210
++ +PG G +K K +K E K TR + EL D++++ F W
Sbjct: 214 AKLLQQRHALPGEQGAFVQATKPAK----LKAQENKTTRMPQNELLDLIYQCFREYRYWP 269
Query: 211 LKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKS 254
K L QP +LK+ L + K G T+ELKPE ++S
Sbjct: 270 FKTLKARLRQPEAYLKQTLEMIAHLVKSGDFAMTWELKPEARES 313
>gi|225561990|gb|EEH10270.1| transcription initiation factor iif [Ajellomyces capsulatus G186AR]
Length = 387
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 3/150 (2%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
+ A+ G V +F+ P E EEY R+ R + R+ I G ++P +
Sbjct: 190 QTAIVGSVRDEFNCLPVEN--EEYQRMAEARALDVLKPKRETLYIGKVSGEMLKPK-TVA 246
Query: 165 GLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQF 224
S K V+ E K R + EL D+++ F R W K L E QP +
Sbjct: 247 AADKSTFIQVAKPPKVRAQENKTARMPQNELLDLIYGCFRRHKYWPFKSLKAELKQPEAY 306
Query: 225 LKEILNELCVYNKRGTNQGTYELKPEYKKS 254
LK+ L + K G T+ELKPE ++S
Sbjct: 307 LKQTLEMVAHLVKSGDFAMTWELKPEARES 336
>gi|296423716|ref|XP_002841399.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637637|emb|CAZ85590.1| unnamed protein product [Tuber melanosporum]
Length = 370
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 4/152 (2%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
+ ++ G V H+ M P EEY R + ++ QV+D + PG
Sbjct: 184 RTSLVGTVRHECSMSPVIN--EEYKRFQLSKFRQADAPRVTTQVLDPNAAGGNLLAPGTT 241
Query: 165 GLIS-SNSKDKKKAQPV-KQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPA 222
G + S + K Q V K T+ K R EL +F LF W+++ + + QP
Sbjct: 242 GATAKSFAGFVKPTQAVRKTTDNKAARMPHSELLTALFSLFAEHEYWSMRGIRERLFQPE 301
Query: 223 QFLKEILNELCVYNKRGTNQGTYELKPEYKKS 254
Q+LK+ L+E+ ++ G G + LK EYK +
Sbjct: 302 QYLKQTLDEIAKMDRNGPFTGKWSLKSEYKNT 333
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 13 GNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTA 72
G+LD +K D++VWL+K P VA+ W D++ + ++ ++P + +++ ++E
Sbjct: 38 GDLDMSKGDKAVWLVKLPSFVAERWN---EIDDNEEIVLGVVKVNPKDTSNLKLSLERNQ 94
Query: 73 VSNDSLNRPKSYSLNM 88
+ D + P Y L +
Sbjct: 95 ANGDEI--PTEYDLRI 108
>gi|240275599|gb|EER39113.1| transcription initiation factor iif [Ajellomyces capsulatus H143]
gi|325091431|gb|EGC44741.1| transcription initiation factor iif [Ajellomyces capsulatus H88]
Length = 387
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 3/150 (2%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
+ A+ G V +F+ P E EEY R+ R + R+ I G ++P +
Sbjct: 190 QTAIVGSVRDEFNCLPVEN--EEYQRMAEARALDVLKPKRETLYIGKVSGEMLKPK-TVA 246
Query: 165 GLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQF 224
S K V+ E K R + EL D+++ F R W K L E QP +
Sbjct: 247 AADKSTFIQVAKPPKVRAQENKTARMPQNELLDLIYGCFRRHKYWPFKSLKAELKQPEAY 306
Query: 225 LKEILNELCVYNKRGTNQGTYELKPEYKKS 254
LK+ L + K G T+ELKPE ++S
Sbjct: 307 LKQTLEMVAHLVKSGDFAMTWELKPEARES 336
>gi|119484622|ref|XP_001262090.1| transcription initiation factor iif, beta subunit [Neosartorya
fischeri NRRL 181]
gi|119410246|gb|EAW20193.1| transcription initiation factor iif, beta subunit [Neosartorya
fischeri NRRL 181]
Length = 374
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 9/153 (5%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRP---MP 161
+ A+ G V +F+ P E EE+ RL +R +++ R+ ID G ++ +P
Sbjct: 179 QTALVGGVSEEFNCLPVEN--EEFRRLSEKRALEALKPKRETVFIDKVPGKLLQARNVLP 236
Query: 162 GMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
G G +K K K E K TR + EL D++++ F W K L QP
Sbjct: 237 GEKGAFVQATKPVK----AKAQENKTTRMPQNELLDLIYQCFREYKYWPFKTLKARLRQP 292
Query: 222 AQFLKEILNELCVYNKRGTNQGTYELKPEYKKS 254
+LK+ L + K G T+ELKPE +S
Sbjct: 293 EAYLKQTLEMVAHLVKSGDFAMTWELKPEAMES 325
>gi|70983648|ref|XP_747351.1| transcription initiation factor iif, beta subunit [Aspergillus
fumigatus Af293]
gi|66844977|gb|EAL85313.1| transcription initiation factor iif, beta subunit [Aspergillus
fumigatus Af293]
gi|159123644|gb|EDP48763.1| transcription initiation factor iif, beta subunit [Aspergillus
fumigatus A1163]
Length = 374
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 9/153 (5%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRP---MP 161
+ A+ G V +F+ P E EE+ RL +R +++ R+ ID G ++ +P
Sbjct: 179 QTALVGGVSEEFNCLPVEN--EEFRRLSEKRALEALKPKRETVFIDKVPGKLLQARNVLP 236
Query: 162 GMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
G G +K K K E K TR + EL D++++ F W K L QP
Sbjct: 237 GEKGAFVQATKPVK----AKAQENKTTRMPQNELLDLIYQCFREYKYWPFKTLKARLRQP 292
Query: 222 AQFLKEILNELCVYNKRGTNQGTYELKPEYKKS 254
+LK+ L + K G T+ELKPE +S
Sbjct: 293 EAYLKQTLEMVAHLVKSGDFAMTWELKPEAMES 325
>gi|389612050|dbj|BAM19555.1| transcription factor TFIIFbeta [Papilio xuthus]
Length = 154
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 76/145 (52%), Gaps = 11/145 (7%)
Query: 108 MEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLI 167
MEG++ K + +P+ N +L E K+ + RQ+Q +D + +P+
Sbjct: 1 MEGRIVQKLECRPYADNTX--YKLKSESIRKASMPQRQVQQLDRI-VQNFKPV------- 50
Query: 168 SSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKE 227
S+ K K+ E K+ R D+ + +++F FE+ + +K L + T QP +LK+
Sbjct: 51 -SDHKHNIDFLEKKKAEGKKARDDKDVVLNMLFAAFEKHQYYNIKDLQKITKQPIVYLKD 109
Query: 228 ILNELCVYNKRGTNQGTYELKPEYK 252
IL E+C YN + ++ +ELKPEY+
Sbjct: 110 ILKEVCNYNLKNPHKNMWELKPEYR 134
>gi|393912406|gb|EFO26064.2| hypothetical protein LOAG_02427 [Loa loa]
Length = 294
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/290 (21%), Positives = 118/290 (40%), Gaps = 58/290 (20%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKV--------------ILSLDPL 59
++D+ A R VWL+K P +++ W+ + V K +L +P
Sbjct: 12 HVDSDCAKRGVWLVKVPRYLSEMWEKNVGHDVGRLVIKAANGKTDLVFKSNTTLLEKNPS 71
Query: 60 QSD----------------------SMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSV 97
D S + +N ++ S+ + ++ ++V
Sbjct: 72 GHDKEASSSNSFLSSLSGNSLSASRSNRIGFAKCKEANFTMPNEHSFVIGDIRN-QSLAV 130
Query: 98 FSESNQG----------KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQ 147
E G ++++EG+V + D +P + +Y R+ ++ KS R ++
Sbjct: 131 LCEDKSGLNEDADICSGRLSIEGRVVKRADCRPPQ--TADYMRMKIKQIEKSSQPKRHVK 188
Query: 148 VIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQP 207
++ V +P+ + + + K+ A+ V R D+ + +F FE+
Sbjct: 189 QMEKAE-VKFKPIAVHAEMQAREKQKKEGAKTV--------RADKDVVRQAIFHAFEKHQ 239
Query: 208 NWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVED 257
+ L L + T QP F+KEIL E+ VYN ++ +ELKPEY+ +D
Sbjct: 240 YYRLVDLQKLTSQPPGFVKEILTEIAVYNTMPPHKSMWELKPEYRSYRKD 289
>gi|345566346|gb|EGX49289.1| hypothetical protein AOL_s00078g322 [Arthrobotrys oligospora ATCC
24927]
Length = 383
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 2/155 (1%)
Query: 98 FSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHM 157
F ++ + A+ G V H+ + P + E+ + + + + + R+ ++ D +
Sbjct: 195 FRKAIPKRTALVGTVRHEAVVTPVDSI--EFAKYLKRKRDIMEEEQRKKHIVVLDKILPG 252
Query: 158 RPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQE 217
P+P + + K + K E K TR R EL D +F F W LK L +
Sbjct: 253 APLPTTNDNLFDQAIQKPGTEKKKTQENKATRMPRNELLDALFTCFSEYEFWTLKGLRER 312
Query: 218 TDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK 252
+QP +LKE L + K G ++LKPEYK
Sbjct: 313 LNQPEAYLKETLESIATLLKTGPFALKWQLKPEYK 347
>gi|342879567|gb|EGU80812.1| hypothetical protein FOXB_08679 [Fusarium oxysporum Fo5176]
Length = 369
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 7/152 (4%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
K + GK+ + ++PH K+ EE R+ +++ + ++Q+I H PG
Sbjct: 190 KTKIFGKIHYDVRVEPHGKDEEE--RVLQQKILDAEANKSKVQIISR-HAASAVVNPGTT 246
Query: 165 GLISSNSKDKK----KAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQ 220
K A+P K K R +L D++F+ F + W++K L Q+ Q
Sbjct: 247 RAAEFGDSFIKNIAATAKPKKGEVFKAARIPENQLLDLIFECFRQYQYWSVKALRQKLQQ 306
Query: 221 PAQFLKEILNELCVYNKRGTNQGTYELKPEYK 252
P Q+L+++L ++ V NK G Y L Y+
Sbjct: 307 PEQYLRQVLEKIAVLNKSGRFANQYCLSDAYR 338
>gi|260946685|ref|XP_002617640.1| hypothetical protein CLUG_03084 [Clavispora lusitaniae ATCC 42720]
gi|238849494|gb|EEQ38958.1| hypothetical protein CLUG_03084 [Clavispora lusitaniae ATCC 42720]
Length = 392
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 73/303 (24%), Positives = 128/303 (42%), Gaps = 68/303 (22%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQAS-----------SQDSQPV-------AKVILS 55
+++ + ++ VWL+K P +A+ W N A+ Q+++PV K++L+
Sbjct: 59 DMNLTRGNQKVWLVKLPRYLAERWTNPANLNGQQLGQVKIRQNNKPVNGKKKLEVKLVLN 118
Query: 56 LDPLQSDS------------------------MQFTMETTAVS-------------NDSL 78
P D +F E T + N+S
Sbjct: 119 DSPETEDIPHEYDLSILNTQVHNSYVFSEENLKRFKQEVTEIGDMPDQPELPELDKNESP 178
Query: 79 NRPKSY------SLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLC 132
RP + + K ++P F ++ K + GK+ H + P KN Y ++
Sbjct: 179 RRPNKFFRVQKNGPDGEKKYIP---FVKTIPKKTNLVGKIVHDCQIVPS-KNDSRYAQML 234
Query: 133 RERTNKSMIKNR-QIQVIDNDHGV-HMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRR 190
+R N + + R ++ ++ GV + P + G S++ K P +TE + R
Sbjct: 235 LKRQNMPLTQERPKVTFLNEIPGVVQSQAGPSLTGK-STSLFLKSTTGPKSKTEGRAIRM 293
Query: 191 DRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPE 250
+ +L D++F+LFE W++K L + T QP +LKE L + NK+G Y LKPE
Sbjct: 294 PKKDLLDLLFRLFEEYEYWSMKGLKERTRQPETYLKESLESIANLNKKGPYTSKYNLKPE 353
Query: 251 YKK 253
YK+
Sbjct: 354 YKR 356
>gi|405119596|gb|AFR94368.1| hypothetical protein CNAG_05103 [Cryptococcus neoformans var.
grubii H99]
Length = 336
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 188 TRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYEL 247
R +R EL D +F+ F P WAL L Q +QP +L+E+L ++ K G QG ++L
Sbjct: 230 ARLERHELTDRIFQCFRDHPYWALGALKQTLEQPDAWLREVLRDVAEQVKEGQYQGYWQL 289
Query: 248 KPEYKKSVEDGG 259
KP +++ GG
Sbjct: 290 KPVWREDAWKGG 301
>gi|321255194|ref|XP_003193340.1| hypothetical protein CGB_D1830W [Cryptococcus gattii WM276]
gi|317459810|gb|ADV21553.1| Hypothetical protein CGB_D1830W [Cryptococcus gattii WM276]
Length = 336
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 188 TRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYEL 247
R +R EL D +F+ F P WAL L Q +QP +L+E+L ++ K G QG ++L
Sbjct: 230 ARLERHELTDRIFQCFRDHPYWALGALKQTLEQPDAWLREVLRDVAEQVKEGQYQGYWQL 289
Query: 248 KPEYKKSVEDGG 259
KP +++ GG
Sbjct: 290 KPVWREDAWKGG 301
>gi|402467254|gb|EJW02583.1| hypothetical protein EDEG_03016 [Edhazardia aedis USNM 41457]
Length = 231
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 113/256 (44%), Gaps = 50/256 (19%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQN------------QASSQDSQPVAKVILSLDPLQSD 62
LDT VWL K P ++ + Q + + Q+SQ +K+ +L SD
Sbjct: 3 LDTKGNKVGVWLAKFPAIITEKLQKMNPESVIGTMNYEKNEQNSQ--SKITFTL----SD 56
Query: 63 SMQFTMETTAVSNDSLNRPKSYSLNMFKDF-VPMSVFS-ESNQGKVAMEGKVEHKFDMKP 120
M +L P Y + +F D M + E Q K+ EG ++ + +++P
Sbjct: 57 EML-----------ALGLPSQYDI-VFNDVRTNMYILKLEGLQSKI--EGTIKKECNIRP 102
Query: 121 HEKNMEEY----GRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKK 176
K EY RL E+ N I+ + D V+M V I SK +KK
Sbjct: 103 --KINHEYLNFKKRLAEEKRN---IQKCCETITLKD--VNMAEKVLGVADIEFLSKKRKK 155
Query: 177 AQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYN 236
+E KR R E +++F +E +W +K + +QP F ++++NE+C+ N
Sbjct: 156 ML----SEKKRERTGSSEALNMIFMAYEESESWTVKDMAARINQPVAFTQQLMNEICILN 211
Query: 237 KRGTNQGTYELKPEYK 252
KR ++ +ELKP YK
Sbjct: 212 KRD-HRNLWELKPLYK 226
>gi|121719914|ref|XP_001276655.1| transcription initiation factor iif, beta subunit [Aspergillus
clavatus NRRL 1]
gi|119404867|gb|EAW15229.1| transcription initiation factor iif, beta subunit [Aspergillus
clavatus NRRL 1]
Length = 374
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 9/154 (5%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRP---MP 161
+ A+ G V +F+ P E EE+ L ++ +++ R+ ID G +R +P
Sbjct: 179 QTALVGGVNEEFNCLPVEN--EEFRLLSEKKALEALKPKRETVFIDKVPGKLLRARNALP 236
Query: 162 GMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
G G +K K K E K TR + EL D++++ F W K L QP
Sbjct: 237 GDKGAFVQAAKTAK----AKTQENKTTRMPQNELLDLIYQCFREYKYWPFKTLKARLQQP 292
Query: 222 AQFLKEILNELCVYNKRGTNQGTYELKPEYKKSV 255
+LK+ L + K G T+ELKPE +S
Sbjct: 293 EAYLKQTLEMVAHLVKSGDFAMTWELKPEAVEST 326
>gi|300709319|ref|XP_002996825.1| hypothetical protein NCER_100012 [Nosema ceranae BRL01]
gi|239606151|gb|EEQ83154.1| hypothetical protein NCER_100012 [Nosema ceranae BRL01]
Length = 230
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 186 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTY 245
KR R D+ E +I+F FE+ +W ++ L T QP F++EI+NE+C +K+ ++ Y
Sbjct: 165 KRERLDKTEAMNIVFNAFEKYESWTVRDLADFTGQPTAFVQEIVNEICNVDKK-EHKSLY 223
Query: 246 ELKPEYK 252
LK EYK
Sbjct: 224 TLKNEYK 230
>gi|58261296|ref|XP_568058.1| hypothetical protein CNL05180 [Cryptococcus neoformans var.
neoformans JEC21]
gi|134115671|ref|XP_773549.1| hypothetical protein CNBI1630 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256175|gb|EAL18902.1| hypothetical protein CNBI1630 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57230140|gb|AAW46541.1| hypothetical protein CNL05180 [Cryptococcus neoformans var.
neoformans JEC21]
Length = 336
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 188 TRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYEL 247
R +R EL D +F+ F P WAL L Q +QP +L+E+L ++ K G QG ++L
Sbjct: 230 ARLERHELTDRIFQCFRDHPYWALGALKQTLEQPDAWLREVLRDVAEQVKEGQYQGYWQL 289
Query: 248 KPEYKKSVEDGG 259
KP +++ GG
Sbjct: 290 KPVWREDSWKGG 301
>gi|408391403|gb|EKJ70781.1| hypothetical protein FPSE_09074 [Fusarium pseudograminearum CS3096]
Length = 363
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 7/147 (4%)
Query: 110 GKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISS 169
GK+ + ++P + EE RL +++ ++ ++Q+I + PG G +S
Sbjct: 189 GKIHYDVRVEPRDIREEE--RLLQQKLLEAEGNKSKLQIISQSAASSIV-APGSAGAVSW 245
Query: 170 NSKDKK----KAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFL 225
K A+P K K R +L D++F+ F + W++K L Q+ QP Q+L
Sbjct: 246 GGSFIKNTASTAKPKKGEVFKAARIPENQLLDLIFECFRQYQYWSMKALRQKLQQPDQYL 305
Query: 226 KEILNELCVYNKRGTNQGTYELKPEYK 252
+++L ++ V NK G Y L Y+
Sbjct: 306 RQVLEKIAVLNKSGRFANHYCLSDAYR 332
>gi|46108468|ref|XP_381292.1| hypothetical protein FG01116.1 [Gibberella zeae PH-1]
Length = 363
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 7/147 (4%)
Query: 110 GKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISS 169
GKV + ++P + EE RL +++ ++ ++Q+I + PG G +S
Sbjct: 189 GKVHYDVRVEPRDIREEE--RLLQQKLLEADGNKSKLQIISQSAASSIV-APGSAGAVSW 245
Query: 170 NSKDKK----KAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFL 225
K A+P K K R +L D++F+ F + W++K L Q+ QP Q+L
Sbjct: 246 GGSFIKNTASTAKPKKGEVFKAARIPENQLLDLIFECFRQYQYWSMKALRQKLQQPDQYL 305
Query: 226 KEILNELCVYNKRGTNQGTYELKPEYK 252
+++L ++ V NK G Y L Y+
Sbjct: 306 RQVLEKIAVLNKSGRFANHYCLSDAYR 332
>gi|302922467|ref|XP_003053471.1| hypothetical protein NECHADRAFT_74647 [Nectria haematococca mpVI
77-13-4]
gi|256734412|gb|EEU47758.1| hypothetical protein NECHADRAFT_74647 [Nectria haematococca mpVI
77-13-4]
Length = 369
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 10/156 (6%)
Query: 110 GKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISS 169
GK+ + ++P + EE RL +R + ++++I + + PG G S
Sbjct: 196 GKIHYDVRVEPRDVREEE--RLLAQRLQDAEQSKSKLKIISRNKASSII-NPGATGSASW 252
Query: 170 NSKDKKKAQPV---KQTEV-KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFL 225
K P+ K+ EV K R +L D++F+ F + W++K L Q+ QP Q+L
Sbjct: 253 GGNFIKNTAPINKPKKGEVFKAARIPENQLLDLIFECFRQYQYWSMKALRQKLQQPDQYL 312
Query: 226 KEILNELCVYNKRGTNQGTYELKPEYKKSVEDGGAD 261
+++L ++ V NK G Y L Y+ + GGA+
Sbjct: 313 RQVLEKIAVLNKSGRFANHYCLSDAYR---DKGGAE 345
>gi|261197806|ref|XP_002625305.1| transcription initiation factor iif [Ajellomyces dermatitidis
SLH14081]
gi|239595268|gb|EEQ77849.1| transcription initiation factor iif [Ajellomyces dermatitidis
SLH14081]
gi|239607691|gb|EEQ84678.1| transcription initiation factor iif [Ajellomyces dermatitidis ER-3]
gi|327355621|gb|EGE84478.1| transcription initiation factor iif [Ajellomyces dermatitidis ATCC
18188]
Length = 387
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 65/154 (42%), Gaps = 11/154 (7%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
+ A+ G V +F+ P E EEY R+ R + R+ I G ++P
Sbjct: 190 QTAIVGSVRDEFNCLPVEN--EEYQRMAEARALDVLKPKRETIYIGKVSGEMLKPKTVAA 247
Query: 165 G----LISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQ 220
I K +AQ E K R + EL D+++ F R W K L E Q
Sbjct: 248 ADKSTFIQVAKPPKARAQ-----ENKTARMPQNELLDLIYGCFRRHKYWPFKSLKAELRQ 302
Query: 221 PAQFLKEILNELCVYNKRGTNQGTYELKPEYKKS 254
P +LK+ L + K G T+ELKPE ++S
Sbjct: 303 PEAYLKQTLEMVAHLVKSGDFAMTWELKPEARES 336
>gi|45199020|ref|NP_986049.1| AFR502Cp [Ashbya gossypii ATCC 10895]
gi|44985095|gb|AAS53873.1| AFR502Cp [Ashbya gossypii ATCC 10895]
gi|374109280|gb|AEY98186.1| FAFR502Cp [Ashbya gossypii FDAG1]
Length = 407
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 76/152 (50%), Gaps = 9/152 (5%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQ---IQVIDNDHGVHMRPMP 161
K A+ G V H+ + P + Y ++ +R + +++N + V+D GV M
Sbjct: 213 KTAVTGTVCHECQLIPSIDD-PNYHKIVEQR--RQIVRNIHKPTVTVLDETPGVTM--SN 267
Query: 162 GMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
+ + S SK K + K + + R + EL D +FKLF+ W+LK L + T QP
Sbjct: 268 AGLSMRSDTSKFLKVGKERKNNQ-RAIRMPKKELLDYLFKLFDEYDYWSLKGLKERTRQP 326
Query: 222 AQFLKEILNELCVYNKRGTNQGTYELKPEYKK 253
+LKE L+++ + K+G Y LK EYKK
Sbjct: 327 EAYLKESLDQVALLVKKGPYALKYTLKTEYKK 358
>gi|156062600|ref|XP_001597222.1| hypothetical protein SS1G_01416 [Sclerotinia sclerotiorum 1980]
gi|154696752|gb|EDN96490.1| hypothetical protein SS1G_01416 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 363
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 72/320 (22%), Positives = 120/320 (37%), Gaps = 61/320 (19%)
Query: 1 MEDDQSNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSL---- 56
MEDD G ++ A + +WL + P V +W+ D + I +
Sbjct: 20 MEDDDIYEDAGDMAINEDPAFQKLWLGRVPKYVWDAWEGLGGDLDEEIQIGTIRNCRERM 79
Query: 57 -DPLQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMS-VFSESN--------QGKV 106
D DS + + + ++ PK Y+L++ + V + +FSE + + K
Sbjct: 80 PDGTVKDSYSMLLSSNLAQHQTV--PKEYNLDITNENVKNTFIFSEQDLPGFKSKSRQKF 137
Query: 107 AME----------GKVEHKFDMKPHEKNM------------------------------- 125
A+E GK+E + +P + N
Sbjct: 138 ALETANMPARLTRGKIEKPANKQPWDPNRKFQPQFRKAIPKRTTLAGRVVHELSCIAVQN 197
Query: 126 EEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPM-PGMVGLISSNSKDKKKAQPVKQTE 184
EE RL RT ++M + ++ D V + PG + + K P T+
Sbjct: 198 EESDRLLAIRTLEAMKPKVGTKFLNEDLDVGQGFIQPGTIKASDAYKSFIKTKNPTAGTK 257
Query: 185 VKRTRRDR---GELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 241
+ T+ R EL D +F F R W++K L E QP +L+E L ++ K G
Sbjct: 258 TQLTKAARMPENELLDRIFDCFRRYNYWSMKALRAELQQPEAYLRETLEKIAFLAKTGRF 317
Query: 242 QGTYELKPEYKKSVEDGGAD 261
+ LKPE K + +G D
Sbjct: 318 ATQWSLKPENKLNNYEGAGD 337
>gi|453089619|gb|EMF17659.1| TFIIF_beta-domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 361
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 181 KQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGT 240
K + K R ++ L D + F+ W+LK L Q QP ++KE L+E+ ++G
Sbjct: 245 KAIKEKAVRMEKAALLDALKMCFKEYTYWSLKALRQRLRQPEAYIKETLDEIATLMRQGD 304
Query: 241 NQGTYELKPEYKKSVEDGGAD 261
Y+LKPEYK +E+GG D
Sbjct: 305 FVQNYKLKPEYKMLMEEGGED 325
>gi|363748542|ref|XP_003644489.1| hypothetical protein Ecym_1446 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888121|gb|AET37672.1| hypothetical protein Ecym_1446 [Eremothecium cymbalariae
DBVPG#7215]
Length = 414
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 76/152 (50%), Gaps = 9/152 (5%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQ---IQVIDNDHGVHMRPMP 161
K ++ G V H+ + P + Y ++ +R K +++N + V+D GV M
Sbjct: 215 KTSITGTVCHECQLIPSIDD-PNYHKIVEQR--KQIVRNVHKPTVTVLDETPGVTM--SN 269
Query: 162 GMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
+ + S SK K + K + + R + EL D +FKLF+ W+LK L + T QP
Sbjct: 270 AGLSMRSDTSKFLKVGKERKNNQ-RAIRMPKKELLDYLFKLFDEYDYWSLKGLKERTRQP 328
Query: 222 AQFLKEILNELCVYNKRGTNQGTYELKPEYKK 253
+LKE L+++ + K+G Y LK EYKK
Sbjct: 329 EAYLKESLDQVALLVKKGPYALKYTLKTEYKK 360
>gi|322708595|gb|EFZ00172.1| transcription initiation factor iif [Metarhizium anisopliae ARSEF
23]
Length = 376
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 7/152 (4%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
K + GK+ +D++ +N+ E RL +R + ++Q+I + + PG
Sbjct: 196 KTKIFGKIH--YDVRVEPRNIREEERLLAQRLLDAESSKTKLQIISRNSASAI-INPGTA 252
Query: 165 GLISSNSKDKKKAQP---VKQTEV-KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQ 220
G + K A P K+ EV K R + +L D++F F + W++K L Q+ Q
Sbjct: 253 GSATWGGGFIKNAPPTVKAKKGEVFKAARIPKNQLLDLIFDCFRQYQYWSMKALRQKLQQ 312
Query: 221 PAQFLKEILNELCVYNKRGTNQGTYELKPEYK 252
P +L+++L E+ V +K G Y L YK
Sbjct: 313 PDSYLRQVLEEVAVLHKSGRFANHYGLNDAYK 344
>gi|115401544|ref|XP_001216360.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114190301|gb|EAU32001.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 394
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 74/169 (43%), Gaps = 21/169 (12%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
+ A+ G V +F+ P E EE+ RL ++ +++ R+ ID G ++P +
Sbjct: 179 QTALVGSVSEEFNCLPVEN--EEFQRLSEKKALEALKPKRETVFIDKVPGKLLQPRNALP 236
Query: 165 G-----------------LISSNSKDKKKAQP--VKQTEVKRTRRDRGELEDIMFKLFER 205
G IS ++ +P +K E K TR + EL D++++ F
Sbjct: 237 GEKSAFVVRTFPFSSAYFRISMTYTIQQATKPPKLKPQENKTTRMPQNELLDLIYQCFRE 296
Query: 206 QPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKS 254
W K L QP +LK+ L + K G T+ELKPE K+S
Sbjct: 297 YKYWPFKTLRARLRQPEAYLKQTLEMVAHLVKSGDFAMTWELKPEAKES 345
>gi|425765785|gb|EKV04433.1| Transcription initiation factor iif, beta subunit [Penicillium
digitatum PHI26]
gi|425783911|gb|EKV21727.1| Transcription initiation factor iif, beta subunit [Penicillium
digitatum Pd1]
Length = 363
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 123/308 (39%), Gaps = 69/308 (22%)
Query: 4 DQSNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDS 63
D+ + G+LD +A ++VWL + P + W++ A D + + I+ ++ ++
Sbjct: 28 DEEDLYEDAGDLDFTQAGQNVWLSRLPRSL---WEHWAHLDDDEEIEVGIMRVEGTPNNI 84
Query: 64 MQFTMETTAVSNDSLNRPKSYSLN------------------MF--KDFVP-----MSVF 98
+ ++ D+ PK Y+L +F KD +P M+ F
Sbjct: 85 KRVSLRLHD-RPDNREIPKDYTLQRQTVDPSGTGSHLTHNTYLFTEKD-IPGVENRMATF 142
Query: 99 SES---------------NQGK-------------VAMEGKVEHKFDMKPHEKNMEEYGR 130
E+ QGK A+ G V +F+ P E EE+ R
Sbjct: 143 GETRSVLYEAQKREAKRREQGKRWEPYVRKTIPKHTALAGAVSEEFNCLPVEN--EEFRR 200
Query: 131 LCRERTNKSMIKNRQIQVIDNDHG--VHMR-PMPGMVG-LISSNSKDKKKAQPVKQTEVK 186
+ +R +++ ++ ID G + R +P G + + K KAQ E K
Sbjct: 201 ISEKRALEALKPRKETVFIDKIPGKIIQARHALPTERGQFVQATRPSKGKAQ-----ENK 255
Query: 187 RTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYE 246
TR + EL D++F+ F W K L QP +LK+ L + K G T+E
Sbjct: 256 STRMPQNELLDLIFQCFREFKYWPFKTLKARLAQPEAYLKQTLEMVAHLVKAGDFAMTWE 315
Query: 247 LKPEYKKS 254
LKPE S
Sbjct: 316 LKPEATHS 323
>gi|342326290|gb|AEL23060.1| transcription initiation factor IIF [Cherax quadricarinatus]
Length = 88
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 44/70 (62%)
Query: 181 KQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGT 240
K+ E ++ R D+ ++ ++++ FE+ + +K L + T QP LKEIL E+C YN +
Sbjct: 19 KKAEGRKARDDKDKVMEMLYAAFEKHQYYNIKDLQKITKQPIMHLKEILKEVCDYNVKNP 78
Query: 241 NQGTYELKPE 250
++ +ELKPE
Sbjct: 79 HKNMWELKPE 88
>gi|322696875|gb|EFY88661.1| transcription initiation factor iif [Metarhizium acridum CQMa 102]
Length = 375
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 7/152 (4%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
K + GK+ +D++ +N+ E RL +R + ++Q+I + + PG
Sbjct: 195 KTKIFGKIH--YDVRVEPRNIREEERLLAQRLLDAESCKSKLQIISRNSASAI-INPGTA 251
Query: 165 GLISSNSKDKKKAQP---VKQTEV-KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQ 220
G + K A P K+ EV K R + +L D++F F + W++K L Q+ Q
Sbjct: 252 GSATWGGGFIKNAPPTVKAKKGEVFKAARIPKNQLLDLIFDCFRQYQYWSMKALRQKLQQ 311
Query: 221 PAQFLKEILNELCVYNKRGTNQGTYELKPEYK 252
P +L+++L E+ V +K G Y L YK
Sbjct: 312 PDSYLRQVLEEVAVLHKSGRFANHYGLNDAYK 343
>gi|295665530|ref|XP_002793316.1| transcription initiation factor iif [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226278230|gb|EEH33796.1| transcription initiation factor iif [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 387
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 65/154 (42%), Gaps = 11/154 (7%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
+ A+ G V +F+ P E E+Y R+ R + R+ I G ++P
Sbjct: 190 QTAIVGVVRDEFNCLPVEN--EQYQRMAEARALDFLKPKRETLYIGKVSGEMLKPKTVAA 247
Query: 165 G----LISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQ 220
I K +AQ E K R + EL D+++ F R W K L E Q
Sbjct: 248 ADKSTFIQVAKPPKARAQ-----ENKTARMPQNELLDLIYGCFRRHKYWPFKSLKAELKQ 302
Query: 221 PAQFLKEILNELCVYNKRGTNQGTYELKPEYKKS 254
P +LK+ L + K G T+ELKPE ++S
Sbjct: 303 PESYLKQTLEMVAHLVKSGDFAMTWELKPEARES 336
>gi|312070149|ref|XP_003138013.1| hypothetical protein LOAG_02427 [Loa loa]
Length = 279
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%)
Query: 181 KQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGT 240
K+ K R D+ + +F FE+ + L L + T QP F+KEIL E+ VYN
Sbjct: 198 KKEGAKTVRADKDVVRQAIFHAFEKHQYYRLVDLQKLTSQPPGFVKEILTEIAVYNTMPP 257
Query: 241 NQGTYELKPEYKKSVED 257
++ +ELKPEY+ +D
Sbjct: 258 HKSMWELKPEYRSYRKD 274
>gi|146420929|ref|XP_001486417.1| hypothetical protein PGUG_02088 [Meyerozyma guilliermondii ATCC
6260]
Length = 380
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 5/166 (3%)
Query: 92 FVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNR-QIQVID 150
FVP+ ++ K + GK+ H + P KN +Y + R N + K R ++ +++
Sbjct: 193 FVPIV---KTIPKKTKLSGKICHDCQIVP-SKNDRQYSKFLNRRQNIQVAKPRPRVTLLN 248
Query: 151 NDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWA 210
GV V +++ K P + E + R R +L D++F+LFE W+
Sbjct: 249 EIPGVLQSNAGPSVRGGNASVFLKTTTVPRSKIEGRAVRMPRKDLLDLLFRLFEEYEYWS 308
Query: 211 LKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE 256
+K L + T QP FLKE L+ + + K+G Y L+PEYKK E
Sbjct: 309 MKGLKERTRQPESFLKECLDSIAILIKKGPYTSKYSLRPEYKKLSE 354
>gi|353242683|emb|CCA74305.1| hypothetical protein PIIN_08258 [Piriformospora indica DSM 11827]
Length = 331
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 181 KQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGT 240
KQ + R + +L D +F F ++ +W++K L Q QP +L+E+LNE+ + + G
Sbjct: 199 KQPFERMARMAKNDLLDALFHHFRQKTHWSIKDLRQRVQQPEVYLREVLNEIAILERSGP 258
Query: 241 NQGTYELKPEYKKSV 255
N G Y L Y V
Sbjct: 259 NNGMYRLTENYMPVV 273
>gi|190346005|gb|EDK37990.2| hypothetical protein PGUG_02088 [Meyerozyma guilliermondii ATCC
6260]
Length = 380
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 5/166 (3%)
Query: 92 FVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNR-QIQVID 150
FVP+ ++ K + GK+ H + P KN +Y + R N + K R ++ +++
Sbjct: 193 FVPIV---KTIPKKTKLSGKICHDCQIVP-SKNDRQYSKFLNRRQNIQVAKPRPRVTLLN 248
Query: 151 NDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWA 210
GV V +++ K P + E + R R +L D++F+LFE W+
Sbjct: 249 EIPGVLQSNAGPSVRGGNASVFLKTTTVPRSKIEGRAVRMPRKDLLDLLFRLFEEYEYWS 308
Query: 211 LKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE 256
+K L + T QP FLKE L+ + + K+G Y L+PEYKK E
Sbjct: 309 MKGLKERTRQPESFLKECLDSIAILIKKGPYTSKYSLRPEYKKLSE 354
>gi|342319205|gb|EGU11155.1| Transcription initiation factor IIF subunit beta [Rhodotorula
glutinis ATCC 204091]
Length = 409
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 74/299 (24%), Positives = 115/299 (38%), Gaps = 72/299 (24%)
Query: 19 KADRSVWLMKCPLVVAKSWQNQASSQ---------------DSQPVAKVILSLDPLQSDS 63
+A + VWL K P + + WQ QA S+ QP VIL P S S
Sbjct: 48 RAKQRVWLCKVPRFLLEKWQ-QAQSEGEILGRLRVWDEKDASGQPKIAVILQDSP--STS 104
Query: 64 MQFTMETTAVSNDSL-----NRPKSYSLNMFKDFVP--------------MSVFSE---- 100
Q T ++ S DS RP S S D VP + VF E
Sbjct: 105 SQPTPGPSS-SRDSKPDLKGKRPASMSAG---DGVPTEYKLTMQNSESRNLFVFGEKVEE 160
Query: 101 ----SNQGK------VAMEGKVEHKFDMKPHEKNMEEYG---RLCRERTNKSMIKNRQIQ 147
+G ++ G V H+ + P + + R+ RER K+ R ++
Sbjct: 161 VMESGEEGARKKRRITSLLGTVAHECSLTPSISSADASAAYARILRERQRKAAEPKRTLK 220
Query: 148 VIDNDHGVHMRPMPGMV-----GLISSNSK--------DKKKAQPVKQTEVKR-TRRDRG 193
++ D R GM G +++ ++ KA+P +R T+ ++
Sbjct: 221 RLEVDDATANRLASGMGAAGIKGRVATFNELFFIRAQNTSSKAKPGSSAAAQRNTKMEKP 280
Query: 194 ELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK 252
L D +F F P W+ + L QP +L+E+L E+ +G + LKPE+K
Sbjct: 281 ALLDEIFTRFSSAPYWSFRTLNDHLRQPQTYLREVLGEVAHLVPKGPYANMWALKPEFK 339
>gi|400601426|gb|EJP69069.1| transcription initiation factor IIF [Beauveria bassiana ARSEF 2860]
Length = 697
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 5/151 (3%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVID-NDHGVHMRP-MPG 162
K + GK+ + ++P EE R ++ ++ ++Q+I N + P G
Sbjct: 201 KTKIFGKIHYDVRVEPRNTGEEE--RYLGQQLFQAEHSKAKLQIISRNTASSIINPGTAG 258
Query: 163 MVGLISSNSKDKKK-AQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
VG + K+ +P K K R + +L D++F F + W++K L Q T QP
Sbjct: 259 AVGWAGNFIKNTPSLVKPKKGENFKAARIPKNQLLDLIFDCFRQYQYWSMKALRQRTQQP 318
Query: 222 AQFLKEILNELCVYNKRGTNQGTYELKPEYK 252
+L+++L E+ V NK G Y L Y+
Sbjct: 319 DSYLRQVLEEVAVLNKSGPFANHYCLSEAYR 349
>gi|255931265|ref|XP_002557189.1| Pc12g03030 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211581808|emb|CAP79930.1| Pc12g03030 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 366
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 17/156 (10%)
Query: 106 VAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV- 164
A+ G V +F+ P E EE+ R+ +R +++ ++ ID +PG +
Sbjct: 178 TALAGAVSEEFNCLPVEN--EEFRRISEKRALEALKPRKETVFIDK--------IPGKII 227
Query: 165 ----GLISSNSKDKKKAQPVK--QTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQET 218
L + + + +P+K E K TR + EL D++F+ F W K L
Sbjct: 228 QARHALPTEKGQFVQATRPIKGKSQENKSTRMPQNELLDLIFQCFREFKYWPFKTLKARL 287
Query: 219 DQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKS 254
QP +LK+ L + K G T+ELKPE S
Sbjct: 288 AQPEAYLKQTLEMVAHLVKAGDFAMTWELKPEATHS 323
>gi|449017678|dbj|BAM81080.1| similar to transcription initiation factor IIF beta subunit
[Cyanidioschyzon merolae strain 10D]
Length = 476
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 199 MFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK 252
+F+LFE Q W L+ L + PA LK +++ELC YN+RG +G Y LK K
Sbjct: 335 VFRLFEEQFWWRLQDLAENLQIPAARLKPVISELCDYNQRGPYRGMYSLKDHLK 388
>gi|406601241|emb|CCH47093.1| Transcription initiation factor IIF subunit beta [Wickerhamomyces
ciferrii]
Length = 424
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 77/158 (48%), Gaps = 7/158 (4%)
Query: 98 FSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNR---QIQVIDNDHG 154
F ++ K ++ GK+ H+ + P N Y ++ + R K++IK + +++ G
Sbjct: 234 FVKTIPKKTSLIGKIAHECQITPM-VNDPNYSKIIQRR--KNLIKEEPRPTVTLLNEIPG 290
Query: 155 VHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQL 214
V + G+ ++ K A + E + R + +L D++FKLF+ W+LK L
Sbjct: 291 VTLSNA-GLTLKTDTSKFLKSSASTKNKNEGRAIRMPQKDLFDLLFKLFDEYDYWSLKGL 349
Query: 215 VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK 252
+ T QP +LKE L ++ K+G Y LK E+K
Sbjct: 350 KERTKQPEVYLKETLEQIAQLIKKGPYALKYALKREFK 387
>gi|346320883|gb|EGX90483.1| transcription initiation factor iif [Cordyceps militaris CM01]
Length = 382
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 79/175 (45%), Gaps = 7/175 (4%)
Query: 81 PKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSM 140
P+ ++ + F P F ++ K + GK+ + ++P EE R ++ ++
Sbjct: 180 PQRHTFDRKSRFQPY--FRKAIPKKTKVFGKIHYDVRVEPRNTGEEE--RYLGQQLFQAE 235
Query: 141 IKNRQIQVID-NDHGVHMRP-MPGMVGLISSNSKDKKKAQPVKQTEV-KRTRRDRGELED 197
++Q+I N + P G VG + K+ K+ E+ K R + +L D
Sbjct: 236 HSRAKLQIISRNTASSIINPGTAGAVGWAGNFIKNTPSLVKPKKGEIFKAARIPKNQLLD 295
Query: 198 IMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK 252
++F F W++K L Q T QP +L+++L E+ V NK G Y L Y+
Sbjct: 296 LIFDCFRLYQYWSMKALRQRTQQPDSYLRQVLEEVAVLNKSGPFANHYCLSDAYR 350
>gi|169806038|ref|XP_001827764.1| transcription initiation factor IIF RAP30 [Enterocytozoon bieneusi
H348]
gi|161779050|gb|EDQ31076.1| transcription initiation factor IIF RAP30 [Enterocytozoon bieneusi
H348]
Length = 220
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 187 RTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYE 246
R R ++ ++ +++FK FE+ +W +K L + QP +++EI+NE+ + +K+ N+ TY
Sbjct: 154 RERLEKPDVLNLIFKAFEKHDSWTVKDLADFSGQPIAYIQEIINEIAILDKKD-NRNTYV 212
Query: 247 LKPEYK 252
LK ++K
Sbjct: 213 LKDQFK 218
>gi|401882364|gb|EJT46625.1| hypothetical protein A1Q1_04802 [Trichosporon asahii var. asahii
CBS 2479]
gi|406702158|gb|EKD05223.1| hypothetical protein A1Q2_00453 [Trichosporon asahii var. asahii
CBS 8904]
Length = 327
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 188 TRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYEL 247
R +R EL D +F LF +P W++ L Q QP +L+E+L ++ K G +EL
Sbjct: 227 ARLERNELIDRLFALFTEKPYWSITALKQTLKQPDAWLREVLKDVASLIKEGQYANMWEL 286
Query: 248 KPEYKKSVEDGGAD 261
K E K V GGAD
Sbjct: 287 K-ENWKDVNVGGAD 299
>gi|171684567|ref|XP_001907225.1| hypothetical protein [Podospora anserina S mat+]
gi|170942244|emb|CAP67896.1| unnamed protein product [Podospora anserina S mat+]
Length = 358
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 16/164 (9%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPG-- 162
K + G+++H+ P E R RT K+ ++++V + G + R + G
Sbjct: 181 KTRIAGRIKHEVLCTPAANPETE--RFLFSRTKKTQETKKEVKVYEA--GTNPRGLSGDK 236
Query: 163 -MVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
G + K K K+ E K R +L D + + F R W++K + QP
Sbjct: 237 EWAGYLKVTEKPTK----AKKMENKTARWPENQLLDAIAECFGRHRFWSIKAIRAVIPQP 292
Query: 222 AQFLKEILNELCVYNKRGTNQGTYELKPEYKKSV-----EDGGA 260
+L+E L ++ V ++ G+ +ELK EYK + EDG A
Sbjct: 293 EVYLRETLEKIAVLHRSGSFANHWELKAEYKSMLKTAQPEDGAA 336
>gi|226291060|gb|EEH46488.1| transcription initiation factor iif [Paracoccidioides brasiliensis
Pb18]
Length = 369
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 120/282 (42%), Gaps = 49/282 (17%)
Query: 13 GNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTA 72
G+LD + A + VWL + P ++ W+N + +D + V + ++ +D + +M
Sbjct: 46 GDLDFSNAMQDVWLTRIPKML---WENWSRLEDDEEVQIGTIRVEGGPTDIKRVSMRLND 102
Query: 73 VSNDSLNRPKSYSL-----NMFKDFVPMS---VFSESNQGKVAMEGKVEHKF----DMKP 120
+ P+ Y+L N K P+ VF+E + + G + + +P
Sbjct: 103 MPQ-MKGVPRDYNLRRQNVNADKTAFPVHNTFVFTEKD-----LPGHRDRSHILFNEAQP 156
Query: 121 HEKN--MEEYGRLCRER---------TNKSMIKNRQIQVIDNDHGV-HMRPM--PGMVGL 166
H ++ E+ R R+R T K++ KN Q Q + + ++P +G
Sbjct: 157 HGRSYLYEQTKRDSRKRNPRKKWEPYTRKTIPKNEQYQRMAEARALDFLKPKRETLYIGK 216
Query: 167 ISSN--------SKDKKK----AQP--VKQTEVKRTRRDRGELEDIMFKLFERQPNWALK 212
+S + DK A+P + E K R + EL D+++ F R W K
Sbjct: 217 VSGEMLKPKTVAAADKSTFIQVAKPPKARAQENKTARMPQNELLDLIYGCFRRHKYWPFK 276
Query: 213 QLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKS 254
L E QP +LK+ L + K G T+ELKPE ++S
Sbjct: 277 SLKAELKQPESYLKQTLEMVAHLVKSGDFAMTWELKPEARES 318
>gi|326429934|gb|EGD75504.1| hypothetical protein PTSG_06576 [Salpingoeca sp. ATCC 50818]
Length = 251
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/268 (20%), Positives = 114/268 (42%), Gaps = 47/268 (17%)
Query: 12 KGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLD-----PLQSDSMQF 66
+ + KA++ VWL++ P +A +W A++QD + ++ + D P + M+
Sbjct: 3 RAEVGMEKAEQEVWLLRIPEPLASAW---AAAQDGTRLGEIRVPTDDAEEHPEKRPKMEL 59
Query: 67 TMETTAVSNDSLNR----PKSYSLNMFKDFVP---MSVFSESNQGKVAMEGKVEHKFDMK 119
+ + D P Y++ VP +++F+E +G + D
Sbjct: 60 RADVPLLEEDQKREKRFIPSRYAVRQ----VPTENLAIFAEEQAALKNEDGTIA---DDA 112
Query: 120 PHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMP------------GMV--G 165
+ G++ R + ++ ++ D + RP GM G
Sbjct: 113 GSILTAQALGQVT-TRADCVIMHGEEL-----DLFIKTRPTELSEDKMTKEASKGMTQDG 166
Query: 166 LISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFL 225
L+ + S K ++ E +TR+ E+++++F LF + + L QL Q T QPAQ+L
Sbjct: 167 LLMTQSLIK-----TQKRERTKTRKPEKEVKELLFGLFRKHEYYTLDQLSQLTQQPAQYL 221
Query: 226 KEILNELCVYNKRGTNQGTYELKPEYKK 253
IL + V + G ++ + L+ +++
Sbjct: 222 ASILRTVAVREQSGEHRNKWHLRRAFRE 249
>gi|367042832|ref|XP_003651796.1| hypothetical protein THITE_2112481 [Thielavia terrestris NRRL 8126]
gi|346999058|gb|AEO65460.1| hypothetical protein THITE_2112481 [Thielavia terrestris NRRL 8126]
Length = 349
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 9/153 (5%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
K + GK++H+ P + E R R N + ++ ++++ + P G+
Sbjct: 171 KTRIAGKIKHEVVCTPVQN--AEANRFLALRANAAENTQKRTKMVNG-----LMPSQGLT 223
Query: 165 GLISSNS--KDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPA 222
++ K ++K K+ E K TR +L D + + F W+++ QP
Sbjct: 224 NPKEWDAFLKTREKPTKAKKLENKATRWPENQLLDAIARCFSEHKYWSIRAFRGRIPQPE 283
Query: 223 QFLKEILNELCVYNKRGTNQGTYELKPEYKKSV 255
+L+E L+++ V + GT + LKPEY+ V
Sbjct: 284 AYLRECLDKIAVLQRSGTFANHWSLKPEYQSMV 316
>gi|225679339|gb|EEH17623.1| transcription initiation factor iif [Paracoccidioides brasiliensis
Pb03]
Length = 369
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 55/133 (41%), Gaps = 9/133 (6%)
Query: 126 EEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVG----LISSNSKDKKKAQPVK 181
E+Y R+ R + R+ I G ++P I K +AQ
Sbjct: 191 EQYQRMAEARALDFLKPKRETLYIGKVSGEMLKPKTVAAADKSTFIQVAKPPKARAQ--- 247
Query: 182 QTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 241
E K R + EL D+++ F R W K L E QP +LK+ L + K G
Sbjct: 248 --ENKTARMPQNELLDLIYGCFRRHKYWPFKSLKAELKQPESYLKQTLEMVAHLVKSGDF 305
Query: 242 QGTYELKPEYKKS 254
T+ELKPE ++S
Sbjct: 306 AMTWELKPEARES 318
>gi|341038658|gb|EGS23650.1| putative transcription initiation factor [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 350
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 65/150 (43%), Gaps = 10/150 (6%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
K + G+++H+ P + E R R ++ Q+Q++D P G+
Sbjct: 173 KTRIAGRIKHEVVCTPAQN--AETDRFLYLRAQEAQKVREQVQIVDK------LPPNGIT 224
Query: 165 GLISSNSKDKKKAQPVKQ--TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPA 222
+ K +P KQ E K TR +L D + K F + W++K Q QP
Sbjct: 225 NRDDWENYLKTSTKPTKQKKMENKATRWPENQLMDEIAKCFSQHKYWSIKAFRQRIPQPE 284
Query: 223 QFLKEILNELCVYNKRGTNQGTYELKPEYK 252
+++E L ++ V + G + LKPE++
Sbjct: 285 AYIRECLEKVAVLQRSGKFANNWSLKPEFQ 314
>gi|367020804|ref|XP_003659687.1| hypothetical protein MYCTH_2297030 [Myceliophthora thermophila ATCC
42464]
gi|347006954|gb|AEO54442.1| hypothetical protein MYCTH_2297030 [Myceliophthora thermophila ATCC
42464]
Length = 345
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%)
Query: 172 KDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNE 231
K ++K K+ E K TR +L D + K F W++K QP +L+E L++
Sbjct: 229 KTREKPTKAKKMENKATRWPENQLLDAIAKCFSEHKYWSIKAFRGRIPQPEAYLRETLDK 288
Query: 232 LCVYNKRGTNQGTYELKPEYK 252
+ V ++ GT + LKPEY+
Sbjct: 289 VAVLHRSGTFANHWSLKPEYE 309
>gi|116192479|ref|XP_001222052.1| hypothetical protein CHGG_05957 [Chaetomium globosum CBS 148.51]
gi|88181870|gb|EAQ89338.1| hypothetical protein CHGG_05957 [Chaetomium globosum CBS 148.51]
Length = 260
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%)
Query: 172 KDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNE 231
K K+K K+ E K TR +L D + + F W++K + QP +L+E L +
Sbjct: 144 KTKEKPTKAKKMENKATRWPENQLLDAIARCFSEHKYWSIKAFRGKIPQPEAYLRETLEK 203
Query: 232 LCVYNKRGTNQGTYELKPEYK 252
+ V ++ GT + LKPEY+
Sbjct: 204 VAVLHRSGTFANHWSLKPEYQ 224
>gi|440634689|gb|ELR04608.1| hypothetical protein GMDG_06890 [Geomyces destructans 20631-21]
Length = 371
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 14/165 (8%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSM-IKNRQIQVIDNDHGVHMRPMPGM 163
K + G+V H+ + P + E RL +RT +M +NR + + PG
Sbjct: 183 KTTLAGRVAHEINCVPVDN--PETNRLLAQRTIAAMQPRNRTVFLSGTRSREAGFIQPGT 240
Query: 164 V-------GLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQ 216
+ G I + K K+ + K R + EL D +F+ F+ W++K L
Sbjct: 241 IRAQEAFGGFIKNTGALKSKSG----QDTKTARMPQNELLDHIFQCFKEYNFWSMKALRA 296
Query: 217 ETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDGGAD 261
+ QP +L+E L ++ + G + LK EYK ++++ AD
Sbjct: 297 KLQQPEAYLRETLEKVADMPRSGRFAMHWTLKKEYKMNIDESTAD 341
>gi|154283733|ref|XP_001542662.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150410842|gb|EDN06230.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 369
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/278 (21%), Positives = 107/278 (38%), Gaps = 41/278 (14%)
Query: 13 GNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTA 72
G+LD + + + VWL + P ++ W+N + +D + V + ++ +D + +M
Sbjct: 46 GDLDFSNSMQDVWLTRIPKML---WENWSRLEDDEEVQIGSIRVEGGPTDIKRVSMRLND 102
Query: 73 VSNDSLNRPKSYSL---NMFKD---FVPMSVFSESNQGKVAMEGKVEHKF-DMKPHEKNM 125
+ PK Y+L N+ D + + F + + + F + +PH ++
Sbjct: 103 IPQ-MKGVPKDYNLRRQNVNPDKSAYAVQNTFIFTEKDLPGYRDRTHLLFNEAQPHGRSY 161
Query: 126 -----------------------------EEYGRLCRERTNKSMIKNRQIQVIDNDHGVH 156
EEY R+ R + R+ I G
Sbjct: 162 LYEQTKRESRKRSNRKKWEPYTRKTIPKNEEYQRMAEARALDVLKPKRETLYIGKVSGEM 221
Query: 157 MRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQ 216
++P + S K V+ E K R + EL D+++ F + W K L
Sbjct: 222 LKPK-TVAAADKSTFIQVAKPPKVRAQENKTARMPQNELLDLIYGCFRQHKYWPFKSLKA 280
Query: 217 ETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKS 254
E QP +LK+ L + K G T+ELKPE ++S
Sbjct: 281 ELKQPEAYLKQTLEMVAHLVKSGDFAMTWELKPEARES 318
>gi|241950553|ref|XP_002417999.1| ATP-dependent helicase, putative; transcription initiation factor
IIF, beta subunit, putative [Candida dubliniensis CD36]
gi|223641338|emb|CAX43298.1| ATP-dependent helicase, putative [Candida dubliniensis CD36]
Length = 383
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 65/306 (21%), Positives = 113/306 (36%), Gaps = 76/306 (24%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQAS-----------SQDSQPVAKVILSLDPLQSD 62
+++ +K D+ VWL+K P + W N S +D++ +V L LD +++
Sbjct: 52 DMNLSKGDQKVWLVKLPKYLMDEWSNPESMNGQHLGNVKIKKDARGKLQVKLVLDNNKNE 111
Query: 63 SM-------------------------QFTMETTAVSN-------DSLNRPKSYSLNMFK 90
+ +F E T VS+ LN P+ + +
Sbjct: 112 KIPKEYDIRMLNTQVRNSYVFTEENLKKFKQELTEVSDMPEQPQLKDLN-PEKKKFQVRR 170
Query: 91 DFVPMSVFSESNQG---------------KVAMEGKVEHKFDMKPHEKNMEEYGRLCRER 135
F V E G K ++ GKV H + P + +G +R
Sbjct: 171 KFKYFRVQKEGENGQPVKKYIPFVKTIPKKTSLMGKVCHDCTVVPA-RTASNHGETLMKR 229
Query: 136 TN--------KSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKR 187
N K + N VI ++ G ++ + L S+ K+K + + ++ +
Sbjct: 230 QNMIQGKERPKVTLLNEIPGVIQSNAGPSIKGNTASIFLKSTQGKNKNEGRAIRMPKKDL 289
Query: 188 TRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYEL 247
E+ + W++K L + T QP +LKE L + KRG Y L
Sbjct: 290 LDLLFRLFEEYEY--------WSMKGLKERTRQPESYLKESLESIATLIKRGPYTSKYTL 341
Query: 248 KPEYKK 253
KPEY++
Sbjct: 342 KPEYRR 347
>gi|50406447|ref|XP_456634.1| DEHA2A07106p [Debaryomyces hansenii CBS767]
gi|49652298|emb|CAG84590.1| DEHA2A07106p [Debaryomyces hansenii CBS767]
Length = 403
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 85/169 (50%), Gaps = 11/169 (6%)
Query: 89 FKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNR-QIQ 147
K FVP + ++ K A+ GKV H + P + + + Y ++ +R N K R ++
Sbjct: 208 VKKFVP---YVKTIPKKTALAGKVCHDCQIIPSKSDTK-YSQVSMKRQNIQPTKPRPKVT 263
Query: 148 VIDNDHGV-HMRPMPGMVGLISSNSKDKKKAQPVKQT--EVKRTRRDRGELEDIMFKLFE 204
++D GV P + G +N+ K+ P K E + R + +L D++F+LFE
Sbjct: 264 LLDEIPGVVQSNAGPSIKG---NNTSVFLKSNPAKSKNGEGRAIRMPKKDLLDLLFRLFE 320
Query: 205 RQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKK 253
W++K L + T QP +LKE L+ + K+G Y LKPEY++
Sbjct: 321 EYEYWSMKGLKERTRQPESYLKESLDSIANLIKKGPYTSKYNLKPEYRR 369
>gi|164662327|ref|XP_001732285.1| hypothetical protein MGL_0060 [Malassezia globosa CBS 7966]
gi|159106188|gb|EDP45071.1| hypothetical protein MGL_0060 [Malassezia globosa CBS 7966]
Length = 393
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 19/146 (13%)
Query: 127 EYGRLCRERTNKSMIKNRQIQVIDN-DHGV-----------HMRPMPGMVGLISSNSKDK 174
EY + R+R +S R + ++D+ D G+ H++P + N++
Sbjct: 230 EYREILRQRRIESSTPKRSVIMMDSGDAGMNNMLAAGVGKGHIKPR--ATNFVMGNAQ-- 285
Query: 175 KKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCV 234
A+ +QTE K R R EL D++F LF++ +W+LK+L +ET QP +L+E+L+ +
Sbjct: 286 --ARTNEQTE-KFARIPRNELLDLLFSLFDKYKHWSLKRLREETQQPYAYLREVLSSIAD 342
Query: 235 YNKRGTNQGTYELKPEYKKSVEDGGA 260
+ G G++ LK EY + G A
Sbjct: 343 QHHNGPYAGSWSLKREYSEGSRTGTA 368
>gi|164427513|ref|XP_963893.2| hypothetical protein NCU03047 [Neurospora crassa OR74A]
gi|157071774|gb|EAA34657.2| predicted protein [Neurospora crassa OR74A]
Length = 345
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%)
Query: 180 VKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRG 239
K+ + K R +L D + K F W++K L QP F++E L+++ V ++ G
Sbjct: 235 AKKMDNKTARWPENQLLDELAKCFSVYMYWSIKALRSRIPQPEAFIRECLDKIAVIHRTG 294
Query: 240 TNQGTYELKPEYKKSVED 257
T + LKPEY+ + D
Sbjct: 295 TFANHWSLKPEYQSMISD 312
>gi|336465225|gb|EGO53465.1| hypothetical protein NEUTE1DRAFT_92770 [Neurospora tetrasperma FGSC
2508]
gi|350295518|gb|EGZ76495.1| hypothetical protein NEUTE2DRAFT_153399 [Neurospora tetrasperma
FGSC 2509]
Length = 345
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%)
Query: 180 VKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRG 239
K+ + K R +L D + K F W++K L QP F++E L+++ V ++ G
Sbjct: 235 AKKMDNKTARWPENQLLDELAKCFSVYMYWSIKALRSRIPQPEAFIRECLDKIAVIHRTG 294
Query: 240 TNQGTYELKPEYKKSVED 257
T + LKPEY+ + D
Sbjct: 295 TFANHWSLKPEYQSMISD 312
>gi|336274256|ref|XP_003351882.1| hypothetical protein SMAC_00429 [Sordaria macrospora k-hell]
gi|380096165|emb|CCC06212.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 345
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%)
Query: 180 VKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRG 239
K+ + K R +L D + K F W++K L QP F++E L+++ V ++ G
Sbjct: 235 AKKMDNKTARWPENQLLDELAKCFSVYMYWSIKALRSRIPQPEAFIRECLDKIAVIHRAG 294
Query: 240 TNQGTYELKPEYKKSVED 257
T + LKPEY+ + D
Sbjct: 295 TFANHWSLKPEYQSMISD 312
>gi|451849754|gb|EMD63057.1| hypothetical protein COCSADRAFT_37932 [Cochliobolus sativus ND90Pr]
Length = 350
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 10/138 (7%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
+ A+ G +++ P E +EY R +++ + +I D V +
Sbjct: 175 QTALVGHATRQYNANPLE--TKEYKDFSAARIKQAIQGSHMTTIITKDTEVS-----DVN 227
Query: 165 GLISSNSKDKKKAQPV---KQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
I N++ K +P+ K + K R R +L D + LF+ W +K + Q T QP
Sbjct: 228 NSIMLNNRFKNFIRPMTKGKSQQNKAARMARSDLIDFLHTLFDEYQYWPMKAIKQRTKQP 287
Query: 222 AQFLKEILNELCVYNKRG 239
Q+LKE+L ++ + K G
Sbjct: 288 EQYLKEVLGDIALLVKSG 305
>gi|189203143|ref|XP_001937907.1| transcription initiation factor IIF [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187985006|gb|EDU50494.1| transcription initiation factor IIF [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 348
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 10/138 (7%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
+ A+ G ++ P + +EY R +++ + +I D V +
Sbjct: 173 QTALIGHATRQYTANPLD--TQEYQDFSAARIKQAIQGSHLTTIITKDTDVS-----DVN 225
Query: 165 GLISSNSKDKKKAQP---VKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
I+ N++ K +P K + K R R +L D++ LF+ W +K + Q T QP
Sbjct: 226 NSITLNNRFKNFIKPTTKAKSQQNKAARMARSDLIDVLHSLFDEYQYWPMKAIKQRTKQP 285
Query: 222 AQFLKEILNELCVYNKRG 239
Q+LKE+L ++ + K G
Sbjct: 286 EQYLKEVLGDIALLVKSG 303
>gi|448514436|ref|XP_003867110.1| hypothetical protein CORT_0A12890 [Candida orthopsilosis Co 90-125]
gi|380351448|emb|CCG21672.1| hypothetical protein CORT_0A12890 [Candida orthopsilosis Co 90-125]
Length = 394
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 65/303 (21%), Positives = 124/303 (40%), Gaps = 68/303 (22%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAV 73
+++ ++ D+ VWL+K P + W + S + + KV + DP ++ +E
Sbjct: 60 DMNLSRGDQKVWLVKLPKYLMDKWNDPESMKKGNQLGKVKIRKDPKGKLEVKLVLEKKEA 119
Query: 74 SNDSLNRPKSYSLNMFKDFVPMS-VFSESNQGKVAME----GKVEHKFDMKPHEKNMEEY 128
+ P+ Y + M V S F+E N K E G++ + ++K ++ +++
Sbjct: 120 -----DIPREYDIKMLNTQVRNSYAFTEENLKKFKQELTEVGEMPQQPELKETDEKKKKF 174
Query: 129 -------------------GRLCRERT------------------NKSMIKNRQIQ---- 147
G+ R+ + S++ +R+ Q
Sbjct: 175 QPRRKFKYFRVQKNGDGSDGQPIRKYIPFVKTIPKKTSLLGKVVHDCSIVPSRRDQNYSV 234
Query: 148 -VIDNDHGVHMRPMPGMV------GLISSNSKDK----------KKAQPVKQTEVKRTRR 190
+ D + P P + G+I SN+ K QP + + + R
Sbjct: 235 LIKSRDANIQGPPKPKVTLLNEIPGVIQSNAGPSIKGNNTSVFLKSTQPKNKADGRAIRM 294
Query: 191 DRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPE 250
R +L D++F+LFE W++K L + T QP +LKE L+ + + K+G + LKPE
Sbjct: 295 PRQDLLDLLFRLFEEYEYWSIKGLKERTKQPESYLKESLDSIAILIKKGPYTSKWVLKPE 354
Query: 251 YKK 253
Y++
Sbjct: 355 YRR 357
>gi|255723710|ref|XP_002546784.1| hypothetical protein CTRG_01089 [Candida tropicalis MYA-3404]
gi|240134675|gb|EER34229.1| hypothetical protein CTRG_01089 [Candida tropicalis MYA-3404]
Length = 391
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 20/172 (11%)
Query: 90 KDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHE---KNMEEYGRL-----CRERTNKSMI 141
K ++P F ++ K ++ GKV H + P + KN E R +ER K +
Sbjct: 196 KKYIP---FVKTIPKKTSLMGKVCHDCTVIPSKTGPKNGESLMRRQNMTQGKERP-KVTV 251
Query: 142 KNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFK 201
N VI ++ G ++ V L S+ K+K + + ++ + E+ +
Sbjct: 252 LNEIPGVIQSNAGPSIKGSSTSVFLRSTQGKNKSEGRAIRMPKKDLLDLLFRLFEEYEY- 310
Query: 202 LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKK 253
W++K L + T QP +LKE L+ + KRG Y LKPEY++
Sbjct: 311 -------WSMKGLKERTRQPESYLKESLDSIATLIKRGPYTSKYTLKPEYRR 355
>gi|452001571|gb|EMD94030.1| hypothetical protein COCHEDRAFT_1020164 [Cochliobolus
heterostrophus C5]
Length = 350
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 10/138 (7%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
+ A+ G +++ P E +EY R +++ + +I D V +
Sbjct: 175 QTALIGHATRQYNANPLE--TKEYKDFSAARIKQAIQGSHMTTIITKDTEVS-----DVN 227
Query: 165 GLISSNSKDKKKAQPV---KQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
I N++ K +P+ K + K R R +L D + LF+ W +K + Q T QP
Sbjct: 228 NSIMLNNRFKNFIRPMTKGKSQQNKAARMARSDLIDFLHTLFDEYQYWPMKAIKQRTKQP 287
Query: 222 AQFLKEILNELCVYNKRG 239
Q+LKE+L ++ + K G
Sbjct: 288 EQYLKEVLGDIALLVKSG 305
>gi|344303297|gb|EGW33571.1| hypothetical protein SPAPADRAFT_60912 [Spathaspora passalidarum
NRRL Y-27907]
Length = 389
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 20/172 (11%)
Query: 90 KDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTN--------KSMI 141
+ ++P F ++ K A+ GK+ H + P K+ +YG + R N K +
Sbjct: 198 RKYIP---FVKTIPKKTALMGKICHDCQIIPS-KSDSKYGEIYMRRHNITQGPPRPKVTL 253
Query: 142 KNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFK 201
N VI ++ G ++ V L S+ +K K + + ++ + E+ +
Sbjct: 254 LNEIPGVIQSNAGPSIKGSNTSVFLKSTIAKGKNEGRAIRMPKKDLLDLLFRLFEEYEY- 312
Query: 202 LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKK 253
W++K L + T QP +LKE L+ + K+G Y LKPEY++
Sbjct: 313 -------WSMKGLKERTRQPESYLKESLDSIANLIKKGPYTSKYNLKPEYRR 357
>gi|452987606|gb|EME87361.1| hypothetical protein MYCFIDRAFT_212854 [Pseudocercospora fijiensis
CIRAD86]
Length = 403
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 188 TRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYEL 247
R D+ +L D + F+ W+L+ L Q QP ++KE L+++ V + G Y+L
Sbjct: 291 VRMDKDKLLDALKNCFKEYQYWSLRALRQRLQQPEVYIKETLDDIAVLMRSGDFVQNYKL 350
Query: 248 KPEYKKSV-EDGGA 260
KPEY++ + ED G+
Sbjct: 351 KPEYERMLREDLGS 364
>gi|330907654|ref|XP_003295884.1| hypothetical protein PTT_03617 [Pyrenophora teres f. teres 0-1]
gi|311332404|gb|EFQ96017.1| hypothetical protein PTT_03617 [Pyrenophora teres f. teres 0-1]
Length = 354
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 10/138 (7%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
+ A+ G ++ P + +EY R +++ + +I D V +
Sbjct: 179 QTALIGHATRQYTANPLD--TKEYQDFSAARIKQAIQGSHLTTIITKDTDVS-----DVN 231
Query: 165 GLISSNSKDKKKAQP---VKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
I+ N++ K +P K + K R R +L D++ LF+ W +K + Q T QP
Sbjct: 232 NSITLNNRFKNFIKPTTKAKSQQNKAARMARSDLIDVLHSLFDEYQYWPMKAIKQRTRQP 291
Query: 222 AQFLKEILNELCVYNKRG 239
Q+LKE+L ++ + K G
Sbjct: 292 EQYLKEVLGDIALLVKSG 309
>gi|378729505|gb|EHY55964.1| transcription initiation factor TFIIF beta subunit [Exophiala
dermatitidis NIH/UT8656]
Length = 380
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 66/307 (21%), Positives = 117/307 (38%), Gaps = 79/307 (25%)
Query: 13 GNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTA 72
G+LD ++A + +WL P + W+ + QD + + ++ +S+ + +M+ A
Sbjct: 46 GDLDFSRAQQPLWLSHIPRTL---WEALSKLQDDDEIEIGTIRVEGPESNPSRVSMKLNA 102
Query: 73 VSNDSLNRPKSYSLNMFKDFVP------------MSVFSESN------------------ 102
+ + N PK Y+L F P VFSE +
Sbjct: 103 LPALA-NEPKEYNL-----FPPPIEKMRARRPGQAMVFSEKDLPGYKPRAFGWDEIDEEG 156
Query: 103 ---QGKVAMEGKVEHKFDMK--------------PHEKNMEEYGRLCRERTNKSMIKNRQ 145
QG+ + + HK ++K P K G + +E + +KN +
Sbjct: 157 NPGQGRSFLYER--HKREIKKKENKGRYTPYTRRPIPKQTAIVGTVAKE-VEATPVKNDE 213
Query: 146 IQVIDNDHGVHM-RPMPGMVGLISSNSKD-KKKAQPV------------------KQTEV 185
++N M +P + ++ +D KK P Q E
Sbjct: 214 YFELENKRAAEMLKPPERDTAVFATGDEDPSKKHTPFMTMTDKANVLKNAQARRNAQKET 273
Query: 186 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTY 245
+ R ++ L D + LF + W L+ L +QP +L+E L+E+ K G G +
Sbjct: 274 RAARVEKHVLIDKLMDLFRQHRIWGLRDLKARVNQPEAYLRETLSEIAFMWKAGDFNGKW 333
Query: 246 ELKPEYK 252
ELK E+K
Sbjct: 334 ELKDEFK 340
>gi|392572981|gb|EIW66123.1| hypothetical protein TREMEDRAFT_45844 [Tremella mesenterica DSM
1558]
Length = 335
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 186 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTY 245
K R +L + +F LF+ +P W ++ L +QP F++E+L E+ K G G Y
Sbjct: 235 KYVRTTHSDLTNRLFALFKDRPYWGIRALRVTLEQPDAFIREVLEEIAEVVKDGQYAGLY 294
Query: 246 ELKPEYKK 253
LK +K+
Sbjct: 295 TLKDVWKE 302
>gi|449297147|gb|EMC93165.1| hypothetical protein BAUCODRAFT_36832 [Baudoinia compniacensis UAMH
10762]
Length = 377
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%)
Query: 188 TRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYEL 247
R DRG+L D + + F R W++K L E QP ++KE+L + + G + L
Sbjct: 259 VRMDRGDLLDALQRCFRRYRYWSMKALRNELRQPEVWIKEVLEGIAFLVRSGDFAMNWTL 318
Query: 248 KPEYKKSVED 257
KPE + +++
Sbjct: 319 KPEMQSIIQE 328
>gi|389632127|ref|XP_003713716.1| hypothetical protein MGG_04761 [Magnaporthe oryzae 70-15]
gi|351646049|gb|EHA53909.1| hypothetical protein MGG_04761 [Magnaporthe oryzae 70-15]
Length = 394
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%)
Query: 166 LISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFL 225
I++N+ K+TE+K R EL D +F+LF + + +K L E QP +L
Sbjct: 272 FITANAAPPPVVTKQKKTELKAARIPENELLDQIFQLFRKFSYYHMKTLRVELRQPEAYL 331
Query: 226 KEILNELCVYNKRGTNQGTYELKPEYKKS 254
++ L ++ V +K G T+ L + K+S
Sbjct: 332 RQTLEKVAVLHKSGNLTNTWGLTDDAKRS 360
>gi|440473976|gb|ELQ42745.1| hypothetical protein OOU_Y34scaffold00194g58 [Magnaporthe oryzae
Y34]
gi|440485018|gb|ELQ65017.1| hypothetical protein OOW_P131scaffold00538g30 [Magnaporthe oryzae
P131]
Length = 388
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%)
Query: 165 GLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQF 224
I++N+ K+TE+K R EL D +F+LF + + +K L E QP +
Sbjct: 265 SFITANAAPPPVVTKQKKTELKAARIPENELLDQIFQLFRKFSYYHMKTLRVELRQPEAY 324
Query: 225 LKEILNELCVYNKRGTNQGTYELKPEYKKS 254
L++ L ++ V +K G T+ L + K+S
Sbjct: 325 LRQTLEKVAVLHKSGNLTNTWGLTDDAKRS 354
>gi|413949785|gb|AFW82434.1| hypothetical protein ZEAMMB73_178832 [Zea mays]
Length = 96
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 38/53 (71%), Gaps = 5/53 (9%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQP-----VAKVILSLDPLQSD 62
L+TA+ADRSVWLMKCP VV+++WQ ++S VAKV+LSLD L+ +
Sbjct: 17 LETARADRSVWLMKCPPVVSRAWQAASASSSDAANANPVVAKVVLSLDLLRQE 69
>gi|441614423|ref|XP_003270182.2| PREDICTED: general transcription factor IIF subunit 2 [Nomascus
leucogenys]
Length = 312
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 104/250 (41%), Gaps = 70/250 (28%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ +++ + FT+ E
Sbjct: 116 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKASGRGEVGKLRIAKTQGRTE-VSFTLNE 171
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 172 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 231
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y RL R + +S R Q +D ++++N K PV
Sbjct: 232 S--ENYMRLKRLQIEESSKPVRLSQQLDK--------------VVTTNYK------PVAN 269
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQ 242
Q N LK++ L E+ V N +G ++
Sbjct: 270 ----------------------HQYNVYLKEI--------------LKEIGVQNVKGIHK 293
Query: 243 GTYELKPEYK 252
T+ELKPEY+
Sbjct: 294 NTWELKPEYR 303
>gi|354546980|emb|CCE43713.1| hypothetical protein CPAR2_213560 [Candida parapsilosis]
Length = 397
Score = 43.5 bits (101), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 20/173 (11%)
Query: 89 FKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTN--------KSM 140
K ++P ++ K ++ GKV H + P ++ + Y L + R K
Sbjct: 199 VKKYIPF---VKTIPKKTSLLGKVVHDCSIVPSRRD-QNYSALIKSRDANIQGPPRPKVT 254
Query: 141 IKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMF 200
+ N VI ++ G ++ V L S+ K+K + ++ + E+ +
Sbjct: 255 LLNEIPGVIQSNAGPSIKGNNTSVFLKSTQPKNKADGRAIRMPKQDLLDLLFRLFEEYEY 314
Query: 201 KLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKK 253
W++K L + T QP +LKE L+ + + K+G + LKPEY+K
Sbjct: 315 --------WSIKGLKERTKQPESYLKESLDSIAILIKKGPYTSKWVLKPEYRK 359
>gi|346978122|gb|EGY21574.1| transcription initiation factor iif [Verticillium dahliae VdLs.17]
Length = 368
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 175 KKAQPVKQTEVKR-----TRRDRGELEDIMFKLFE-RQPNWALKQLVQETDQPAQFLKEI 228
K PVK ++ K+ TR D EL + + F R W + L +QP +L++
Sbjct: 255 KTTNPVKTSKQKKPANKATRMDETELREALLDAFTNRFQYWKMSVLKATFNQPEAYLRQE 314
Query: 229 LNELCVYNKRGTNQGTYELKPEYK 252
L ++ V N+ G + +E+KPE+K
Sbjct: 315 LEKIAVMNRSGPHSNEWEIKPEFK 338
>gi|302411154|ref|XP_003003410.1| transcription initiation factor iif [Verticillium albo-atrum
VaMs.102]
gi|261357315|gb|EEY19743.1| transcription initiation factor iif [Verticillium albo-atrum
VaMs.102]
Length = 368
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 175 KKAQPVKQTEVKR-----TRRDRGELEDIMFKLF-ERQPNWALKQLVQETDQPAQFLKEI 228
K PVK ++ K+ TR D EL + + F R W + L +QP +L++
Sbjct: 255 KTTNPVKTSKQKKPANKATRMDETELREALLDAFTNRFQYWKMSVLKATFNQPEAYLRQE 314
Query: 229 LNELCVYNKRGTNQGTYELKPEYK 252
L ++ V N+ G + +E+KPE+K
Sbjct: 315 LEKIAVMNRSGPHSNEWEIKPEFK 338
>gi|154308826|ref|XP_001553748.1| hypothetical protein BC1G_07941 [Botryotinia fuckeliana B05.10]
gi|347838640|emb|CCD53212.1| similar to transcription initiation factor iif [Botryotinia
fuckeliana]
Length = 364
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 66/309 (21%), Positives = 114/309 (36%), Gaps = 61/309 (19%)
Query: 1 MEDDQSNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSL---- 56
MEDD G ++ + + +WL + P V +W + D + I +
Sbjct: 20 MEDDDIYEDAGDMAINEDPSFQKLWLGRVPKYVWDAWNGMSEDLDEEIQIGTIRNCRERM 79
Query: 57 -DPLQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMS-VFSESN--------QGKV 106
D DS + + + ++ PK Y+L++ V + VFSE + + K
Sbjct: 80 PDGTVKDSYSMLLNSNLAQHQTV--PKEYNLDITNSNVKNTFVFSEQDLPGFKSKSRQKF 137
Query: 107 AME----------GKVEHKFDMKPHEKNME---EYGRLCRERTNKSMIKNRQIQVI---- 149
A+E GK+E + +P + N + ++ + +RTN S ++ I
Sbjct: 138 ALETANMPARLTRGKIEKPANKQPWDPNKKFQPQFRKAIPKRTNLSGRVVHELSCIAVQN 197
Query: 150 -DNDHGVHMRPMPGMV----------------GLISSNS-----------KDKKKAQPVK 181
++D + +R + M G I + K K K
Sbjct: 198 EESDRLLAIRTLEAMKPKVGTKFLNEDLDVGQGFIQPGTIKASDAYRSFIKTKSSTASGK 257
Query: 182 QTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 241
K R EL D +F+ F W++K L QP +L+E L ++ K G
Sbjct: 258 PQLTKAARMPENELLDKIFECFREYNYWSMKALRARLQQPEAYLRETLEKIAFLAKTGRF 317
Query: 242 QGTYELKPE 250
+ LKPE
Sbjct: 318 ATQWSLKPE 326
>gi|396471048|ref|XP_003838777.1| hypothetical protein LEMA_P024500.1 [Leptosphaeria maculans JN3]
gi|312215346|emb|CBX95298.1| hypothetical protein LEMA_P024500.1 [Leptosphaeria maculans JN3]
Length = 459
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 186 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTY 245
K R R +L DI+ F+ W +K L T QP Q+LKE+L ++ K G+ T+
Sbjct: 361 KAARVARADLIDILHSCFDEYQYWPMKALKARTKQPEQYLKEVLADIAHLVKSGSFASTW 420
Query: 246 E 246
+
Sbjct: 421 K 421
>gi|344229087|gb|EGV60973.1| transcription initiation factor IIF, beta subunit [Candida tenuis
ATCC 10573]
gi|344229088|gb|EGV60974.1| hypothetical protein CANTEDRAFT_116016 [Candida tenuis ATCC 10573]
Length = 363
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 209 WALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKK 253
W++K L + T QP +LKE L+ + K+G Y LKPEYKK
Sbjct: 284 WSIKGLRERTKQPESYLKESLDSIANLIKKGPYTSKYNLKPEYKK 328
>gi|343959718|dbj|BAK63716.1| transcription initiation factor IIF subunit beta [Pan troglodytes]
Length = 181
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 14/158 (8%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKASGRGEVGKLRIAKTQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPM 160
E Y RL R + +S R Q +D + +P+
Sbjct: 121 S--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPV 156
>gi|119629132|gb|EAX08727.1| general transcription factor IIF, polypeptide 2, 30kDa, isoform
CRA_b [Homo sapiens]
Length = 181
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 14/158 (8%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKASGRGEVGKLRIAKTQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPM 160
E Y RL R + +S R Q +D + +P+
Sbjct: 121 S--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPV 156
>gi|448119808|ref|XP_004203823.1| Piso0_000843 [Millerozyma farinosa CBS 7064]
gi|359384691|emb|CCE78226.1| Piso0_000843 [Millerozyma farinosa CBS 7064]
Length = 398
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 209 WALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKK 253
W++K L + T QP +LKE L+ + K+G Y LKPEY+K
Sbjct: 314 WSMKGLKERTRQPESYLKESLDSIANLIKKGPYTSKYNLKPEYRK 358
>gi|448117382|ref|XP_004203241.1| Piso0_000843 [Millerozyma farinosa CBS 7064]
gi|359384109|emb|CCE78813.1| Piso0_000843 [Millerozyma farinosa CBS 7064]
Length = 398
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 209 WALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKK 253
W++K L + T QP +LKE L+ + K+G Y LKPEY+K
Sbjct: 314 WSMKGLKERTRQPESYLKESLDSIANLIKKGPYTSKYNLKPEYRK 358
>gi|169602625|ref|XP_001794734.1| hypothetical protein SNOG_04316 [Phaeosphaeria nodorum SN15]
gi|160706214|gb|EAT88076.2| hypothetical protein SNOG_04316 [Phaeosphaeria nodorum SN15]
Length = 329
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%)
Query: 186 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTY 245
K R R EL D++ F+ W +K L T QP QFLKE L E+ + G +
Sbjct: 230 KAARVSREELIDMLHSAFDEYQYWPMKALKTRTKQPEQFLKETLAEIAQLVRSGPFASNW 289
Query: 246 ELKPEY 251
+ +P +
Sbjct: 290 QRQPMF 295
>gi|380488282|emb|CCF37485.1| transcription initiation factor IIF [Colletotrichum higginsianum]
Length = 365
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 176 KAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVY 235
KA K+ E + R +L D + + F R W + L DQP FL++ L ++ V
Sbjct: 258 KATKPKKAENRAARMSEEQLLDGLMEAFRRYEYWKMSILKARFDQPEAFLRQTLEKIAVL 317
Query: 236 NKRGTNQGTYELKPEYKKSVEDGG 259
N+ G + + L+ E+ KS+ G
Sbjct: 318 NRSGIHANEWSLQ-EHLKSMASGA 340
>gi|397627470|gb|EJK68484.1| hypothetical protein THAOC_10324 [Thalassiosira oceanica]
Length = 335
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 11/84 (13%)
Query: 173 DKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQL--VQETDQPAQFLKEILN 230
D+ K P+ +T RT ++F+LF ++ W+ K++ P + +++ L
Sbjct: 257 DRSKGPPITETAAVRT---------MLFELFSKKQFWSAKEIKFASGGRLPDREMRDALR 307
Query: 231 ELCVYNKRGTNQGTYELKPEYKKS 254
+ Y+K G N+ +ELK E+K +
Sbjct: 308 LIATYHKNGENRNMWELKAEFKSA 331
>gi|413945987|gb|AFW78636.1| hypothetical protein ZEAMMB73_145723 [Zea mays]
Length = 76
Score = 41.6 bits (96), Expect = 0.37, Method: Composition-based stats.
Identities = 29/52 (55%), Positives = 37/52 (71%), Gaps = 7/52 (13%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQP-------VAKVILSLDPL 59
L+TA+ADRSVWLMKCP VV+++WQ ++S S VAKV+LSLD L
Sbjct: 8 LETARADRSVWLMKCPPVVSRAWQAASASASSSDAANANPVVAKVVLSLDLL 59
>gi|361127293|gb|EHK99267.1| putative Transcription initiation factor IIF subunit beta [Glarea
lozoyensis 74030]
Length = 377
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 177 AQPVKQTEVKRTRR-DRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVY 235
AQ K+ ++++T R + EL D +F+ F W++K QP +L+E L+ +
Sbjct: 262 AQGGKKPQMQKTARMPQNELLDRIFECFREFNYWSMKAFRGRLQQPEVYLRETLDRIATL 321
Query: 236 NKRGTNQGTYELKPE 250
+K G Y LKPE
Sbjct: 322 HKSGPFASHYSLKPE 336
>gi|398410784|ref|XP_003856740.1| hypothetical protein MYCGRDRAFT_31899 [Zymoseptoria tritici IPO323]
gi|339476625|gb|EGP91716.1| hypothetical protein MYCGRDRAFT_31899 [Zymoseptoria tritici IPO323]
Length = 367
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 188 TRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYEL 247
R ++ +L D + + F+ W+LK L QP ++KE L+E+ K G Y+L
Sbjct: 255 VRLEKSQLLDKIQECFKDYQYWSLKALRNRLHQPEAYIKETLDEIATLVKSGDFVQNYKL 314
Query: 248 KPEY 251
KP+Y
Sbjct: 315 KPDY 318
>gi|405961158|gb|EKC27003.1| General transcription factor IIF subunit 2 [Crassostrea gigas]
Length = 188
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 71/138 (51%), Gaps = 24/138 (17%)
Query: 94 PMSVFSESNQG--------KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNR- 144
P++V ES+ G ++A+EGKV + D +P +K + Y L R++ IKN+
Sbjct: 56 PVTVKQESSSGSVDVVASDRIAVEGKVIQRADCQP-DKTIS-YMNLKRKQLE---IKNKP 110
Query: 145 QIQVIDNDHGVHM-RPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLF 203
Q +VI V M +P+ V ++ S DK K + KR R D+ ++ DI+F F
Sbjct: 111 QREVIQITKVVPMYKPVNNHVH--NAPSSDKNKVE-------KRLREDKEKVMDILFNAF 161
Query: 204 ERQPNWALKQLVQETDQP 221
E+ + +K LV T QP
Sbjct: 162 EKHQYYNVKDLVTLTKQP 179
>gi|167391016|ref|XP_001739603.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165896679|gb|EDR24026.1| hypothetical protein EDI_139490 [Entamoeba dispar SAW760]
Length = 219
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 186 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELC-VYNKRGTNQGT 244
KR R + EL D + +F+ +P + L E QP Q+LKE L ++C + ++
Sbjct: 152 KRVRMNETELTDKILSMFKIKPTYTFTMLNLELKQPEQYLKEQLKKICDLVQSPTSSMKE 211
Query: 245 YELKPEYK 252
Y+LK +Y+
Sbjct: 212 YQLKKDYQ 219
>gi|67473245|ref|XP_652389.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
gi|56469239|gb|EAL47003.1| hypothetical protein EHI_174950 [Entamoeba histolytica HM-1:IMSS]
gi|449702266|gb|EMD42939.1| Hypothetical protein EHI5A_077970 [Entamoeba histolytica KU27]
Length = 219
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 186 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELC-VYNKRGTNQGT 244
KR R + EL D + +F+ +P + L E QP Q+LKE L ++C + ++
Sbjct: 152 KRVRMNETELTDRILSMFKIKPTYTFNMLNLELKQPEQYLKEQLKKICDLVQSPTSSMKE 211
Query: 245 YELKPEYK 252
Y+LK +Y+
Sbjct: 212 YQLKKDYQ 219
>gi|150863704|ref|XP_001382266.2| hypothetical protein PICST_81830 [Scheffersomyces stipitis CBS
6054]
gi|149384960|gb|ABN64237.2| RNA polymerase II transcription initiation factor TFIIF middle
subunit [Scheffersomyces stipitis CBS 6054]
Length = 402
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 209 WALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKK 253
W++K L + T QP +LKE L+ + K+G Y LKPEY++
Sbjct: 323 WSMKGLKERTRQPESYLKESLDSIANLIKKGPYTSKYNLKPEYRR 367
>gi|429859735|gb|ELA34503.1| transcription initiation factor iif [Colletotrichum gloeosporioides
Nara gc5]
Length = 367
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 176 KAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVY 235
KA K+ E + R +L D + + F + W + L DQP FL++ L ++ V
Sbjct: 258 KATKPKKAENRSARMSEEQLLDGLMEAFRKYEYWKMSILKARFDQPEAFLRQTLEKIAVL 317
Query: 236 NKRGTNQGTYELKPEYKKSVEDGGAD 261
N+ G + + L+ E+ KS+ G +
Sbjct: 318 NRSGIHANEWSLQ-EHMKSMASGATN 342
>gi|432112402|gb|ELK35197.1| General transcription factor IIF subunit 2 [Myotis davidii]
Length = 273
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 14/137 (10%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ + +++ + FT+ E
Sbjct: 132 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLNE 187
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 188 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 247
Query: 123 KNMEEYGRLCRERTNKS 139
E Y RL R + +S
Sbjct: 248 S--ENYMRLKRLQAERS 262
>gi|407040073|gb|EKE39965.1| hypothetical protein ENU1_107980 [Entamoeba nuttalli P19]
Length = 219
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 186 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELC-VYNKRGTNQGT 244
KR R + EL D + +F+ +P + L E QP Q+LKE L ++C + ++
Sbjct: 152 KRVRMNETELTDRILAMFKIKPTYTFNMLNLELKQPEQYLKEQLKKICDLVQSPTSSMKE 211
Query: 245 YELKPEYK 252
Y+LK +Y+
Sbjct: 212 YQLKKDYQ 219
>gi|390337008|ref|XP_784682.2| PREDICTED: general transcription factor IIF subunit 2-like
[Strongylocentrotus purpuratus]
Length = 199
Score = 40.4 bits (93), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 97/249 (38%), Gaps = 69/249 (27%)
Query: 10 NGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSL---DPLQSDSMQF 66
K LD + R +WL+K P VA+ W+ S + + K+ + P S M
Sbjct: 2 TSKMELDLTASARPIWLVKVPKYVAQRWEK---SDKNGHIGKIRVGKKFGKPDISLVMDE 58
Query: 67 TMETTAVSNDSLNRPKSYSLNMFKDFV-PMSVFSESNQGKVAMEGKVEHKFDMKPHEKNM 125
+ T ++ D + P + L + M V+S K+++EGKV + +
Sbjct: 59 RVAKTKLTPDDPDIPVEHKLQVMSALPGTMMVYSTGTTDKLSVEGKVVERLE-------- 110
Query: 126 EEYGRLCRERTNKS--MIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQT 183
CR + S ++K +QI++ K T
Sbjct: 111 ------CRPVGSDSYMLMKRKQIELAH------------------------------KPT 134
Query: 184 EVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQG 243
+V + +DR P A K + + + P +LKE+L E+ Y+++ ++
Sbjct: 135 KVTQQIKDR--------------PVNAYKPISRHKELP--YLKEMLQEIGTYHQKAPHKY 178
Query: 244 TYELKPEYK 252
+ELK EY+
Sbjct: 179 MWELKAEYR 187
>gi|310793774|gb|EFQ29235.1| transcription initiation factor IIF [Glomerella graminicola M1.001]
Length = 364
Score = 40.4 bits (93), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 176 KAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVY 235
KA K+ E + R +L D + + F + W + L DQP FL++ L ++ V
Sbjct: 258 KATKPKKAENRAARMSEEQLLDGLMEAFRKYEYWKMSILKARFDQPEAFLRQTLEKIAVL 317
Query: 236 NKRGTNQGTYELKPEYKKSVEDGG 259
N+ G + + L+ E+ KS+ G
Sbjct: 318 NRSGIHANEWSLQ-EHLKSMASGA 340
>gi|238881836|gb|EEQ45474.1| hypothetical protein CAWG_03802 [Candida albicans WO-1]
Length = 381
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 64/308 (20%), Positives = 117/308 (37%), Gaps = 81/308 (26%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQAS-----------SQDSQPVAKVILSLD----- 57
+++ +K D+ VWL+K P + W N S +D++ +V L LD
Sbjct: 52 DMNLSKGDQKVWLVKLPKYLMDDWSNPDSMNGQQLGNVKIKKDARGKLQVKLLLDNKNDK 111
Query: 58 -PLQSDSM------------------QFTMETTAVSNDSLNRPKSYSLNM---------- 88
P + D +F E T VS D +P+ LN
Sbjct: 112 IPKEYDIKMLNTQVRNSYVFTEENLKKFKQEVTEVS-DMPEQPQLKELNPEKKKFQVRRK 170
Query: 89 ---------------FKDFVPMSVFSESNQGKVAMEGKVEHKFDMKP------HEKNMEE 127
K ++P ++ K ++ GKV H + P H +++ +
Sbjct: 171 FKYFRVQKEGENGQPVKKYIPF---VKTIPKKTSLMGKVCHDCTVVPARTGSKHGESLMK 227
Query: 128 YGRLC--RERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEV 185
+ + +ER +++ N VI ++ G ++ + L S+ K+K + + ++ +
Sbjct: 228 HQNMTQGKERPKVTLL-NEIPGVIQSNAGPSIKGNAASIFLKSTQGKNKSEGRAIRMPKK 286
Query: 186 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTY 245
E+ + W++K L + T QP +LKE L + KRG Y
Sbjct: 287 DLLDLLFRLFEEYEY--------WSMKGLKERTRQPESYLKESLESIATLIKRGPYTSKY 338
Query: 246 ELKPEYKK 253
LK EY++
Sbjct: 339 TLKAEYRR 346
>gi|68472727|ref|XP_719682.1| hypothetical protein CaO19.9659 [Candida albicans SC5314]
gi|68472984|ref|XP_719557.1| hypothetical protein CaO19.2111 [Candida albicans SC5314]
gi|46441379|gb|EAL00677.1| hypothetical protein CaO19.2111 [Candida albicans SC5314]
gi|46441509|gb|EAL00806.1| hypothetical protein CaO19.9659 [Candida albicans SC5314]
Length = 381
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 64/308 (20%), Positives = 117/308 (37%), Gaps = 81/308 (26%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQAS-----------SQDSQPVAKVILSLD----- 57
+++ +K D+ VWL+K P + W N S +D++ +V L LD
Sbjct: 52 DMNLSKGDQKVWLVKLPKYLMDDWSNPDSMNGQQLGNVKIKKDARGKLQVKLLLDNKNDR 111
Query: 58 -PLQSDSM------------------QFTMETTAVSNDSLNRPKSYSLNM---------- 88
P + D +F E T VS D +P+ LN
Sbjct: 112 IPKEYDIKMLNTQVRNSYVFTEENLKKFKQEVTEVS-DMPEQPQLKELNPEKKKFQVRRK 170
Query: 89 ---------------FKDFVPMSVFSESNQGKVAMEGKVEHKFDMKP------HEKNMEE 127
K ++P ++ K ++ GKV H + P H +++ +
Sbjct: 171 FKYFRVQKEGENGQPVKKYIPF---VKTIPKKTSLMGKVCHDCTVVPARTGSKHGESLMK 227
Query: 128 YGRLC--RERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEV 185
+ + +ER +++ N VI ++ G ++ + L S+ K+K + + ++ +
Sbjct: 228 HQNMTQGKERPKVTLL-NEIPGVIQSNAGPSIKGNAASIFLKSTQGKNKSEGRTIRMPKK 286
Query: 186 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTY 245
E+ + W++K L + T QP +LKE L + KRG Y
Sbjct: 287 DLLDLLFRLFEEYEY--------WSMKGLKERTRQPESYLKESLESIATLIKRGPYTSKY 338
Query: 246 ELKPEYKK 253
LK EY++
Sbjct: 339 TLKAEYRR 346
>gi|440299546|gb|ELP92098.1| hypothetical protein EIN_379950 [Entamoeba invadens IP1]
Length = 215
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 31/48 (64%)
Query: 186 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELC 233
KR R D +L++ +F++F ++ +++ E DQP Q+LK L++LC
Sbjct: 148 KRVRMDENQLKNKIFEMFSKKEAMTFQEINTELDQPDQYLKTQLDKLC 195
>gi|403350233|gb|EJY74568.1| hypothetical protein OXYTRI_04174 [Oxytricha trifallax]
Length = 275
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 161 PGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQ 220
PG ++S + +++ Q + KR D+G+L+ +F LF++ + L+ + +Q
Sbjct: 192 PGQETILSGAAASQRQ-----QPKEKRFAMDQGDLKMEIFGLFQKYYQYTLEDIQNILNQ 246
Query: 221 PAQFLKEILNELCVYNKRGTNQGTYELKPEY 251
P +K++L E+C N+ N YELK Y
Sbjct: 247 PRDPVKKVLEEICELNR---NTRFYELKRSY 274
>gi|11514676|pdb|1F3U|A Chain A, Crystal Structure Of The Rap3074 INTERACTION DOMAINS OF
Human Tfiif
gi|11514678|pdb|1F3U|C Chain C, Crystal Structure Of The Rap3074 INTERACTION DOMAINS OF
Human Tfiif
gi|11514680|pdb|1F3U|E Chain E, Crystal Structure Of The Rap3074 INTERACTION DOMAINS OF
Human Tfiif
gi|11514682|pdb|1F3U|G Chain G, Crystal Structure Of The Rap3074 INTERACTION DOMAINS OF
Human Tfiif
Length = 118
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 12/118 (10%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ +++ + FT+ E
Sbjct: 4 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKASGRGEVGKLRIAKTQGRTE-VSFTLNE 59
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKP 120
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 60 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRP 117
>gi|452847112|gb|EME49044.1| hypothetical protein DOTSEDRAFT_67924 [Dothistroma septosporum
NZE10]
Length = 366
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%)
Query: 186 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTY 245
K R EL D + K F W+++ L + QP F+KE L + K G GTY
Sbjct: 255 KAVRMTTNELIDALQKCFTEYQYWSMRSLRKHLQQPEAFIKETLEGIAFLIKSGDFVGTY 314
Query: 246 EL 247
+L
Sbjct: 315 KL 316
>gi|307106872|gb|EFN55117.1| expressed protein, partial [Chlorella variabilis]
Length = 52
Score = 38.5 bits (88), Expect = 3.2, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 214 LVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKS 254
L ++T QP Q LKE+L E+ V N RG + +ELK EYK +
Sbjct: 1 LQKDTVQPTQHLKEVLGEIAVKNTRGPFKDLWELKKEYKAT 41
>gi|402087094|gb|EJT81992.1| hypothetical protein GGTG_01966 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 379
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 180 VKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRG 239
K+ ++K TR EL D +F F + W +K L QP +L++ L ++ ++ G
Sbjct: 269 AKRVDMKTTRMAENELLDQIFICFAKHTYWPMKTLRHTLRQPEAYLRQTLEKVAELHRTG 328
Query: 240 TNQGTYELKPEYKKS 254
T+ L + +S
Sbjct: 329 RFANTWSLTKDVARS 343
>gi|50306097|ref|XP_453010.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642143|emb|CAH01861.1| KLLA0C18194p [Kluyveromyces lactis]
Length = 388
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 72/149 (48%), Gaps = 3/149 (2%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
K A+ GKV H+ + P + + + R I + V+D GV M GM
Sbjct: 190 KTAVTGKVYHECQVMPSIDDPNYHTIVEHRRQIVRNIHKPTVTVLDQTPGVTM-SNAGMS 248
Query: 165 GLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQF 224
+ S++ K K+ + R + EL D++FKLF+ W+LK L + T QP +
Sbjct: 249 --MRSDTSKFLKVGKEKKNNARAIRLPKKELLDLLFKLFDEYDYWSLKGLKERTRQPEAY 306
Query: 225 LKEILNELCVYNKRGTNQGTYELKPEYKK 253
LKE L+++ + K+G Y LK EYKK
Sbjct: 307 LKESLDQVAMLVKKGPYALKYTLKSEYKK 335
>gi|66359930|ref|XP_627143.1| transcription initiation factor IIF/ Rap30 like winged HTH
[Cryptosporidium parvum Iowa II]
gi|46228562|gb|EAK89432.1| transcription initiation factor IIF/ Rap30 like winged HTH
[Cryptosporidium parvum Iowa II]
Length = 186
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 195 LEDIMFKLFERQPN--WALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEY 251
L++ +FK+FE + + +LK++ +T +P LK+I+ E+ V RG + + LKP++
Sbjct: 125 LKENIFKIFEEKGSEGVSLKEIEDKTMKPKHILKKIVEEIAVQAGRGGRRHIWYLKPQF 183
>gi|67618676|ref|XP_667608.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54658753|gb|EAL37372.1| hypothetical protein Chro.80283 [Cryptosporidium hominis]
Length = 186
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 195 LEDIMFKLFERQPN--WALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEY 251
L++ +FK+FE + + +LK++ +T +P LK+I+ E+ V RG + + LKP++
Sbjct: 125 LKENIFKIFEEKGSEGVSLKEIEDKTMKPKHILKKIVEEIAVQAGRGGRRHIWYLKPQF 183
>gi|223993441|ref|XP_002286404.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220977719|gb|EED96045.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 841
Score = 37.4 bits (85), Expect = 6.9, Method: Composition-based stats.
Identities = 48/248 (19%), Positives = 100/248 (40%), Gaps = 44/248 (17%)
Query: 34 AKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFV 93
AK + A+ + P +K+ +++DP ++S + P +Y+L
Sbjct: 597 AKRRKTSATDGGAAP-SKISITIDPSLAESQS-------------DLPVNYTLEAMSKKT 642
Query: 94 PMSV--FSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDN 151
P ++ F+ G VA+ G V + + +G ER K++++NR + N
Sbjct: 643 PGTLHPFTRGADGGVAIHGVVSRTASAQVASDSNSAHGSDGNERY-KTLLRNRLLDTSVN 701
Query: 152 DH------GVHMRPMP------------GMVGLISSNSKDKKKAQPVKQTEVKRTRRDRG 193
GV P G G ++ K AQ + + + G
Sbjct: 702 SKRFVQPGGVDAAAGPSKAATAAASLGKGFGGSVARFGKQMMDAQEQCKGFIIPDSKSAG 761
Query: 194 E-------LEDIMFKLFERQPNWALKQLVQETDQ--PAQFLKEILNELCVYNKRGTNQGT 244
+ +F+ F ++P W++++L + P + +++L ++ Y++ G ++
Sbjct: 762 PPITSVEGIRSALFEYFSKRPLWSVRELRLASGGRLPEKETRDVLRDIAHYHRIGVHKNM 821
Query: 245 YELKPEYK 252
+ELK EY+
Sbjct: 822 WELKAEYR 829
>gi|384498375|gb|EIE88866.1| phenylalanyl-tRNA synthetase, beta subunit [Rhizopus delemar RA
99-880]
Length = 598
Score = 37.0 bits (84), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 29/170 (17%)
Query: 42 SSQDSQPVAKVILSLDPLQSDSMQFT--METTAVSNDSLNRPKSY-SLNMFKDFVPMSVF 98
+S D + +V++++ P + D + ME A+S N PK ++N F +P++
Sbjct: 332 ASIDPKDKNQVLVNVPPTRWDILHACDIMEDVAISYGYDNLPKKMPNVNTFGAPLPLNKL 391
Query: 99 SESNQGKVAMEGKVE-HKFDMKPHEKNMEEYGRLCRERTNKSMIK-----NRQIQVIDND 152
S+ + ++AM G E + H++N + L +E NKS IK + QV
Sbjct: 392 SDHIRKELAMAGFTEVAPLILCSHDEN---FKFLNKEDDNKSAIKLANPKTAEYQV---- 444
Query: 153 HGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVK--------RTRRDRGE 194
V +PG++ ++SN KK A P+K EV R RR R E
Sbjct: 445 --VRTSLLPGILKTLNSN---KKLAMPIKVFEVSDVGFKDETRERRARNE 489
>gi|403351978|gb|EJY75492.1| hypothetical protein OXYTRI_03121 [Oxytricha trifallax]
Length = 319
Score = 37.0 bits (84), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 193 GELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEY 251
++ +++ KL + +Q+ + D P + L+++L ELC Y++ N Y LKP Y
Sbjct: 263 SQMRELLLKLLRSNKKMSFRQIQRLFDNPERPLRQVLKELCDYDR---NSNLYSLKPCY 318
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.312 0.128 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,008,649,004
Number of Sequences: 23463169
Number of extensions: 151298227
Number of successful extensions: 290166
Number of sequences better than 100.0: 423
Number of HSP's better than 100.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 289339
Number of HSP's gapped (non-prelim): 551
length of query: 261
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 122
effective length of database: 9,097,814,876
effective search space: 1109933414872
effective search space used: 1109933414872
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 75 (33.5 bits)