BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024896
(261 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O94424|T2FB_SCHPO Transcription initiation factor IIF subunit beta
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tfg2 PE=1 SV=1
Length = 307
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 130/261 (49%), Gaps = 21/261 (8%)
Query: 2 EDDQSNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQS 61
EDD+ + + G+LD + VWL+K P + W N D+ + V +++
Sbjct: 12 EDDR--YEDDAGDLDLGQIGSRVWLVKIPKFLMDKW-NSIPEDDAANLGCV-----RVKN 63
Query: 62 DSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMS-VFSESNQGK----VAMEGKVEHKF 116
D +Q ++ + + D PK Y+L + FV S VF ES A+ G V H+
Sbjct: 64 DEIQLLLQNSPENADV---PKIYNLRVMNKFVRNSYVFRESETSSSMKSTALVGTVAHEC 120
Query: 117 DMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLIS-SNSKDKK 175
++ P ++Y R+ ++R + R++Q+ID+ G + PG +G S S + +
Sbjct: 121 NVSPVIN--DDYRRVMQKRALAASAPKRKVQMIDDRGGSLL--APGTLGSRSRSTTSFIR 176
Query: 176 KAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVY 235
+P +K +R R EL DI+FK FE W LK L + QP +LKE+L+ + +
Sbjct: 177 NVKPRTGEGLKNSRIPRNELLDILFKCFEDYEYWTLKGLREYVKQPEVYLKEVLDSIAIL 236
Query: 236 NKRGTNQGTYELKPEYKKSVE 256
NKRG Y LKPEYK +++
Sbjct: 237 NKRGPYALKYSLKPEYKGTMD 257
>sp|P13984|T2FB_HUMAN General transcription factor IIF subunit 2 OS=Homo sapiens
GN=GTF2F2 PE=1 SV=2
Length = 249
Score = 94.7 bits (234), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 128/250 (51%), Gaps = 22/250 (8%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKASGRGEVGKLRIAKTQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y RL R + +S R Q +D + +P+ +N + + + K+
Sbjct: 121 S--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIEYERKKK 170
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQ 242
+ KR R D+ + D++F FE+ + LK LV T QP +LKEIL E+ V N +G ++
Sbjct: 171 EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHK 230
Query: 243 GTYELKPEYK 252
T+ELKPEY+
Sbjct: 231 NTWELKPEYR 240
>sp|Q2T9L9|T2FB_BOVIN General transcription factor IIF subunit 2 OS=Bos taurus GN=GTF2F2
PE=2 SV=1
Length = 249
Score = 94.4 bits (233), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 129/250 (51%), Gaps = 22/250 (8%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ + +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y RL R + +S R Q +D + +P+ +N + + + K+
Sbjct: 121 N--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIEYERKKK 170
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQ 242
+ KR R D+ + D++F FE+ + LK LV T QP +LK+IL E+ V N +G ++
Sbjct: 171 EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVSYLKDILKEIGVQNVKGIHK 230
Query: 243 GTYELKPEYK 252
T+ELKPEY+
Sbjct: 231 NTWELKPEYR 240
>sp|Q8R0A0|T2FB_MOUSE General transcription factor IIF subunit 2 OS=Mus musculus
GN=Gtf2f2 PE=1 SV=1
Length = 249
Score = 94.0 bits (232), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 129/250 (51%), Gaps = 22/250 (8%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ + +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKASGRGEVGKLRIAKNQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y +L R + +S R Q +D + +P+ +N + + + K+
Sbjct: 121 S--ENYMKLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIEYERKKK 170
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQ 242
+ KR R D+ + D++F FE+ + LK LV T QP +LKEIL E+ + N +G ++
Sbjct: 171 EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVKGIHK 230
Query: 243 GTYELKPEYK 252
T+ELKPEY+
Sbjct: 231 NTWELKPEYR 240
>sp|Q01750|T2FB_RAT General transcription factor IIF subunit 2 OS=Rattus norvegicus
GN=Gtf2f2 PE=2 SV=1
Length = 249
Score = 92.0 bits (227), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 128/250 (51%), Gaps = 22/250 (8%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ + +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y +L R + +S R Q D + +P+ +N + + + K+
Sbjct: 121 S--ENYMKLKRLQIEESSKPVRLSQQADKVVTTNYKPV--------ANHQYNIEYERKKK 170
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQ 242
+ KR R D+ + D++F FE+ + LK LV T QP +LKEIL E+ + N +G ++
Sbjct: 171 EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVKGIHK 230
Query: 243 GTYELKPEYK 252
T+ELKPEY+
Sbjct: 231 NTWELKPEYR 240
>sp|P41900|T2FB_DROME General transcription factor IIF subunit 2 OS=Drosophila
melanogaster GN=TfIIFbeta PE=2 SV=2
Length = 277
Score = 91.7 bits (226), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 124/255 (48%), Gaps = 28/255 (10%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQD----------------SQPVAKVILSLD 57
+LD + A R VWL+K P +A+ W+ ++ D S + +L+LD
Sbjct: 15 DLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLALD 74
Query: 58 PLQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFD 117
P + + ++ + V+ +L + + K+ S N+ K+ MEG++ K +
Sbjct: 75 PEEKIPTEHILDVSQVTKQTLGVFSHMAPSDGKENSTTSAAQPDNE-KLYMEGRIVQKLE 133
Query: 118 MKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKA 177
+P N Y +L E K+ R++Q ID + +P+ I +++KKA
Sbjct: 134 CRPIADNC--YMKLKLESIRKASEPQRRVQPIDKIVQ-NFKPVKDHAHNIEY--RERKKA 188
Query: 178 QPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNK 237
E K+ R D+ + D++F FE+ + +K LV+ T+QP +LKEIL ++C YN
Sbjct: 189 ------EGKKARDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDVCDYNM 242
Query: 238 RGTNQGTYELKPEYK 252
+ ++ +ELK EY+
Sbjct: 243 KNPHKNMWELKKEYR 257
>sp|Q03123|T2FB_XENLA General transcription factor IIF subunit 2 OS=Xenopus laevis
GN=gtf2f2 PE=2 SV=1
Length = 264
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 136/264 (51%), Gaps = 36/264 (13%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L+ AK + +WL+K P +A+ W A + V K+ + + +++ + FT+ E
Sbjct: 6 GELDLNGAKQNTGMWLVKLPKYLAQQW---AKATGRGEVGKLRIVKNQGKTE-VSFTLNE 61
Query: 70 TTAVSNDSLNRPKSYSLNMFKD--FV-------PMSVFSESNQG------------KVAM 108
A D +P S ++ ++ F+ ++V +ES G K+A+
Sbjct: 62 ELASIQDIGGKPASSLVSTPREHPFLLQSVGGQTLTVLTESLSGQSEDKSENRVIDKLAL 121
Query: 109 EGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLIS 168
EG V H+ + +P + Y ++ R++ +S RQ Q ++ + +P+
Sbjct: 122 EGIVVHRAECRPAASD--NYMQMKRKQIEESSKPKRQSQQLEKAVTSNYKPV-------- 171
Query: 169 SNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEI 228
SN + + + K+ + KR R D+ ++ D++F FE+ + +K LV T QP +LKEI
Sbjct: 172 SNHQYNIEYEKKKKDDGKRARVDKHQVLDMLFSAFEKHQYYNIKDLVDITKQPVTYLKEI 231
Query: 229 LNELCVYNKRGTNQGTYELKPEYK 252
L ++ +YN +GT++ T+ELKPEY+
Sbjct: 232 LRDIGIYNMKGTHKNTWELKPEYR 255
>sp|Q54KT7|T2FB_DICDI General transcription factor IIF subunit 2 OS=Dictyostelium
discoideum GN=gtf2f2 PE=3 SV=2
Length = 241
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 113/249 (45%), Gaps = 37/249 (14%)
Query: 13 GNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAK----VILSLDPLQSDSMQFTM 68
G ++T AD VWL+K P +++SWQ + Q K + LS P +F +
Sbjct: 11 GEVNTDNADNQVWLIKVPKFLSESWQKIGQGEIGQIHIKGGDNISLSYGP--DVGQEFQL 68
Query: 69 ETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEY 128
TTA + D+ P+ +FSE G +A+EG + + D+K ++ +Y
Sbjct: 69 ITTANTLDN---------------QPLKIFSEDKDGALALEGNIGLRCDIKIDVES-PQY 112
Query: 129 GRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRT 188
L + R K K R QVID P L +N K K V T+ K++
Sbjct: 113 RDLMKSRHTKYNTKTRMTQVIDESE--LFTPT-----LFDAN---KVKVSTVGITQKKKS 162
Query: 189 RRD-----RGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQG 243
E+ D++F F + + LK L T+QP LK IL ++C+ NKRG
Sbjct: 163 TDKKEKLPEDEVLDLIFSAFRAEKHLDLKTLESFTEQPKNHLKTILEKVCILNKRGPYHH 222
Query: 244 TYELKPEYK 252
YELKPE++
Sbjct: 223 LYELKPEFR 231
>sp|P41896|T2FB_YEAST Transcription initiation factor IIF subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TFG2 PE=1
SV=2
Length = 400
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 78/154 (50%), Gaps = 4/154 (2%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQ-IQVIDNDHGVHMRPMPGM 163
K A+ G V H+ + P N Y ++ +R N + N++ I +D GV M GM
Sbjct: 211 KTAIVGTVCHECQVMPS-MNDPNYHKIVEQRRNIVKLNNKERITTLDETVGVTM-SHTGM 268
Query: 164 VGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQ 223
+ S NS K + ++ +K R + E+ D +FKLF+ W+LK L + T QP
Sbjct: 269 -SMRSDNSNFLKVGREKAKSNIKSIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQPEA 327
Query: 224 FLKEILNELCVYNKRGTNQGTYELKPEYKKSVED 257
LKE L+++ K+G Y L+PEYKK E+
Sbjct: 328 HLKECLDKVATLVKKGPYAFKYTLRPEYKKLKEE 361
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAV 73
+LD +++R VWL++ P+ +A+ W+++ ++ Q + K+ + D + T+
Sbjct: 58 DLDLERSNRQVWLVRLPMFLAEKWRDR-NNLHGQELGKI-----RINKDGSKITLLLNEN 111
Query: 74 SNDSLNRPKSYSLNMFKDFVPMS-VFSESNQGK 105
NDS+ P Y L + K V VF+E N K
Sbjct: 112 DNDSI--PHEYDLELTKKVVENEYVFTEQNLKK 142
>sp|O67907|KCY_AQUAE Cytidylate kinase OS=Aquifex aeolicus (strain VF5) GN=cmk PE=3 SV=1
Length = 222
Score = 34.7 bits (78), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 93 VPMSVFSESNQGKVAMEGKVEHKFDMKPHE--KNMEEYGRL--CRERTNK---SMIKNRQ 145
+P+ V + + +V +EGK ++ D++ E K E G + RER NK +I N+Q
Sbjct: 58 LPVKVVPKIGKTEVYIEGKPVNEEDLRSEEVGKRASELGSIPEFRERINKLFKEIINNKQ 117
Query: 146 IQVIDNDHGVHMRPMPGMVGLISSNSKDKKK 176
+ V D G H+ P + I+++ +++ K
Sbjct: 118 MVVEGRDAGTHIIPEAPVKVFITASPEERAK 148
>sp|Q09813|T111_SCHPO Putative transcription initiation factor TFIID 111 kDa subunit
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC2G11.14 PE=1 SV=1
Length = 979
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 186 KRTRRDRGELEDIMFKLFERQPNWAL--KQLVQE-TDQPAQFLKEILNELCVYNKRGTNQ 242
K T + L+ ++F+L R PN L +QL + +DQ +++ L E Y K+G
Sbjct: 593 KVTTASKNRLKMLVFRLIRRSPNGGLFIRQLSKHFSDQNEMQIRQRLKEFMEYKKKGDGP 652
Query: 243 GTYELK 248
G ++LK
Sbjct: 653 GYWKLK 658
>sp|Q9I7U4|TITIN_DROME Titin OS=Drosophila melanogaster GN=sls PE=1 SV=3
Length = 18141
Score = 31.2 bits (69), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 100 ESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQV--IDNDHGVHM 157
ESN+ V M+ V HK D+ + E C+ T + ++ I+V IDN G+H+
Sbjct: 8999 ESNKVHVQMDNLVMHKEDIFENA----EIENFCKPITEGTQLETVVIEVVPIDNVGGIHL 9054
Query: 158 RPMPGMVGLISSNSKD 173
P P + L + S D
Sbjct: 9055 APQPSTL-LATLTSTD 9069
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.128 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,255,328
Number of Sequences: 539616
Number of extensions: 3712067
Number of successful extensions: 7632
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 7601
Number of HSP's gapped (non-prelim): 30
length of query: 261
length of database: 191,569,459
effective HSP length: 115
effective length of query: 146
effective length of database: 129,513,619
effective search space: 18908988374
effective search space used: 18908988374
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)