Query 024896
Match_columns 261
No_of_seqs 116 out of 212
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 16:19:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024896.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024896hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bby_A RAP30; average structur 100.0 4.9E-38 1.7E-42 228.3 5.0 69 187-255 1-69 (69)
2 1f3u_A Transcription initiatio 100.0 3E-30 1E-34 206.8 9.0 107 9-121 2-118 (118)
3 2doa_A RNA polymerase II elong 70.1 1.3 4.5E-05 34.0 0.9 30 222-254 45-74 (104)
4 2e5n_A RNA polymerase II elong 68.8 1.5 5E-05 33.5 0.9 28 222-252 46-73 (100)
5 3nfg_B DNA-directed RNA polyme 51.9 2.7 9.2E-05 33.2 -0.3 15 20-34 28-42 (123)
6 2heo_A Z-DNA binding protein 1 42.4 35 0.0012 23.0 4.4 37 196-232 12-49 (67)
7 1ldj_A Cullin homolog 1, CUL-1 32.3 39 0.0014 33.8 4.5 61 193-253 588-661 (760)
8 3dpl_C Cullin-5; ubiquitin, NE 32.1 59 0.002 29.7 5.4 60 194-253 199-276 (382)
9 2hye_C Cullin-4A, CUL-4A; beta 26.3 45 0.0015 33.4 3.7 60 194-253 593-662 (759)
10 2htj_A P fimbrial regulatory p 25.2 1.4E+02 0.0048 20.2 5.3 54 197-250 3-62 (81)
11 1qbj_A Protein (double-strande 23.8 1.3E+02 0.0046 21.1 5.0 57 195-251 11-73 (81)
12 3lmm_A Uncharacterized protein 23.6 74 0.0025 30.9 4.6 55 197-254 433-495 (583)
13 1ylf_A RRF2 family protein; st 23.4 80 0.0027 24.5 4.0 54 195-250 17-74 (149)
14 2y75_A HTH-type transcriptiona 21.5 1.4E+02 0.0048 22.1 5.0 44 206-250 24-71 (129)
15 1au1_A Interferon-beta; helica 21.4 82 0.0028 25.6 3.8 44 193-236 60-109 (166)
16 1xd7_A YWNA; structural genomi 20.4 1.3E+02 0.0044 23.1 4.6 38 210-249 25-66 (145)
No 1
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=100.00 E-value=4.9e-38 Score=228.33 Aligned_cols=69 Identities=43% Similarity=0.746 Sum_probs=67.3
Q ss_pred cccCChhHHHHHHHHHhhhCCCcchHHHHHHcCCcHHHHHHHHHHhhhhhccCCCCcccccchhhhccc
Q 024896 187 RTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSV 255 (261)
Q Consensus 187 ~~Rm~k~eLld~LF~~Fe~~~yWslK~L~~~t~QPe~yLKevL~eIa~lnk~Gp~~~~weLKpEYk~~~ 255 (261)
++|||+++|+|+||+|||+|+||+||+|+++|+||++||||||++||+||++|||+|+|+||||||++.
T Consensus 1 r~R~~~~~l~d~lF~~Fek~~yw~lK~L~~~t~QP~~yLKeiL~~Ia~~~k~g~~~~~weLKpEyr~y~ 69 (69)
T 1bby_A 1 RARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHKNTWELKPEYRHYQ 69 (69)
T ss_dssp CTHHHHHHHHHHHHHHHHHCSCBCHHHHHHHCCSCHHHHHHHHHHHCCCBCCTTCCCBBCCCCSSCCCC
T ss_pred CCcCCHHHHHHHHHHHHhhcCCCcHHHHHHHHcCcHHHHHHHHHHHHHHHcCCCCCCeeeCcHHHhccC
Confidence 589999999999999999999999999999999999999999999999999999999999999999874
No 2
>1f3u_A Transcription initiation factor IIF, beta subunit; general transcription initiation and elongation factor, RNA polymerase II; 1.70A {Homo sapiens} SCOP: b.65.1.1
Probab=99.96 E-value=3e-30 Score=206.82 Aligned_cols=107 Identities=21% Similarity=0.399 Sum_probs=88.7
Q ss_pred CCCCCCcccCCCCCcEEEEeccHHHHHHHhhhcCCCCCCcceEEEEEeCCCCCCCceeEEEecccC---------CCCCC
Q 024896 9 GNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAVS---------NDSLN 79 (261)
Q Consensus 9 ~~~~~~Ld~~~a~~~vWLvKVPk~L~e~W~~~~~~~~~~~iGkir~~~~~~~~~~~~~~~~l~~~~---------~~~~~ 79 (261)
++|+++||+++++++|||||||+|||++|++.. ++++||+|+|..+++ .. +++|.|+... +++.+
T Consensus 2 ~~~~~dld~~~~~~~VWLvKvPk~L~e~W~~~~---~~~~vGkvri~~~~g-~~--~v~l~L~~~~~~~~~~~~~~~~~~ 75 (118)
T 1f3u_A 2 ERGELDLTGAKQNTGVWLVKVPKYLSQQWAKAS---GRGEVGKLRIAKTQG-RT--EVSFTLNEDLANIHDIGGKPASVS 75 (118)
T ss_dssp CTTBEECHHHHTTCEEEEEEEEHHHHHHHTTCC---TTCEEEEEEEEEETT-EE--EEEEEECHHHHTCCCTTCCCSTTC
T ss_pred CcccccccccCCCceEEEEECCHHHHHHHHhCC---CCCceEEEEEecCCC-ce--eEEEEeChhHhhhccccccccccC
Confidence 578899999999999999999999999998644 236899999997753 33 4444443211 24678
Q ss_pred CCcceeecccc-CCceeeeeeecCCcceeEEEEeeeeeEEeeC
Q 024896 80 RPKSYSLNMFK-DFVPMSVFSESNQGKVAMEGKVEHKFDMKPH 121 (261)
Q Consensus 80 iPkey~l~~~~-~~~~~~VFse~~~~~~~l~G~V~~e~~~~P~ 121 (261)
+|++|+|.|++ +.+||+||||+++++++|||+|+|+|+|+|.
T Consensus 76 iPkeY~l~~~~~~~~~~~VFSE~~~~~~a~EG~V~~k~d~rP~ 118 (118)
T 1f3u_A 76 APREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPA 118 (118)
T ss_dssp SCCEEEEEEECCTTSEEEEEEEETTCCEEEEEEEEEEEEECCC
T ss_pred CChhceEEeeccCCceeEEEeccCCCcEEEEEEEEEEEEeecC
Confidence 99999999998 5789999999999999999999999999994
No 3
>2doa_A RNA polymerase II elongation factor ELL; C19ORF17, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.81
Probab=70.14 E-value=1.3 Score=33.96 Aligned_cols=30 Identities=20% Similarity=0.290 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhhhhhccCCCCcccccchhhhcc
Q 024896 222 AQFLKEILNELCVYNKRGTNQGTYELKPEYKKS 254 (261)
Q Consensus 222 e~yLKevL~eIa~lnk~Gp~~~~weLKpEYk~~ 254 (261)
..-|..||.+||.+|.+. |.|+||+++=.-
T Consensus 45 ~~~l~~iL~eVA~~~~~~---~~y~Lk~~~y~e 74 (104)
T 2doa_A 45 KDALDGLLQQVANMSAKD---GTCTLQDCMYKD 74 (104)
T ss_dssp HHHHHHHHHHSSEECSSS---CEEECCSSGGGG
T ss_pred HHHHHHHHHHHHhcCCcC---CeeeehHHHHHH
Confidence 356899999999999763 899999986443
No 4
>2e5n_A RNA polymerase II elongation factor ELL2; ELL_N2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.84 E-value=1.5 Score=33.45 Aligned_cols=28 Identities=25% Similarity=0.261 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhhhhhccCCCCcccccchhhh
Q 024896 222 AQFLKEILNELCVYNKRGTNQGTYELKPEYK 252 (261)
Q Consensus 222 e~yLKevL~eIa~lnk~Gp~~~~weLKpEYk 252 (261)
..-|..||.+||.+|.+. |.|+||+++=
T Consensus 46 ~~~l~~iL~eVa~~~~~~---~~y~Lk~~~~ 73 (100)
T 2e5n_A 46 KNSLGAILQQVANLNSKD---LSYTLKDYVF 73 (100)
T ss_dssp HHHHHHHHHHHEEEETTT---TEEEECSTHH
T ss_pred HHHHHHHHHHHHhcCCcC---CeeehhHHHH
Confidence 356889999999999763 8999999854
No 5
>3nfg_B DNA-directed RNA polymerase I subunit RPA34; triple barrel, transcription, dimerization; 2.51A {Candida glabrata} PDB: 3nff_B
Probab=51.88 E-value=2.7 Score=33.16 Aligned_cols=15 Identities=33% Similarity=0.873 Sum_probs=12.8
Q ss_pred CCCcEEEEeccHHHH
Q 024896 20 ADRSVWLMKCPLVVA 34 (261)
Q Consensus 20 a~~~vWLvKVPk~L~ 34 (261)
.+++|||+|+|+.|-
T Consensus 28 ~~KevWlIkaP~~~p 42 (123)
T 3nfg_B 28 DNKELWLMKVPANID 42 (123)
T ss_dssp TTEEEEEEEEETTCC
T ss_pred CCcEEEEEeCCCCCC
Confidence 568999999999874
No 6
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=42.36 E-value=35 Score=23.03 Aligned_cols=37 Identities=24% Similarity=0.403 Sum_probs=28.7
Q ss_pred HHHHHHHhhhC-CCcchHHHHHHcCCcHHHHHHHHHHh
Q 024896 196 EDIMFKLFERQ-PNWALKQLVQETDQPAQFLKEILNEL 232 (261)
Q Consensus 196 ld~LF~~Fe~~-~yWslK~L~~~t~QPe~yLKevL~eI 232 (261)
...|..+|.+. .+++..+|.+.++=|.+.+-..|...
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L 49 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRL 49 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 44566666655 68999999999999998888777655
No 7
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=32.32 E-value=39 Score=33.82 Aligned_cols=61 Identities=15% Similarity=0.247 Sum_probs=45.9
Q ss_pred hHHHHHHHHHhhhCCCcchHHHHHHcCCcHHHHHHHHHHhh---hhhccCC----------CCcccccchhhhc
Q 024896 193 GELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELC---VYNKRGT----------NQGTYELKPEYKK 253 (261)
Q Consensus 193 ~eLld~LF~~Fe~~~yWslK~L~~~t~QPe~yLKevL~eIa---~lnk~Gp----------~~~~weLKpEYk~ 253 (261)
.-+-..|.-+|.+..-|++.+|.+.|+=|...|+.+|..++ +|.+.+| -...+.|-.+|.+
T Consensus 588 s~~Qa~iLllFn~~~~~t~~ei~~~t~i~~~~l~r~L~~l~k~~iL~~~~~~~~~~~~~~~~~~~f~lN~~F~~ 661 (760)
T 1ldj_A 588 STFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKLLVLEDENANVDEVELKPDTLIKLYLGYKN 661 (760)
T ss_dssp CHHHHHHHHGGGSSSEEEHHHHHHHTCCCHHHHHHHHHHHHHTTTEECSCTTCCTTTCCCCTTCEEEECSSCCC
T ss_pred cHHHHHHHHHhcCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcceeCCCccccccCCCCCCCEEEeeccccC
Confidence 34455677899999999999999999999999999998776 4443432 1345667666654
No 8
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=32.06 E-value=59 Score=29.72 Aligned_cols=60 Identities=13% Similarity=0.187 Sum_probs=45.5
Q ss_pred HHHHHHHHHhhhC--CCcchHHHHHHcCCcHHHHHHHHHHhh--------hhhccCCC--------Ccccccchhhhc
Q 024896 194 ELEDIMFKLFERQ--PNWALKQLVQETDQPAQFLKEILNELC--------VYNKRGTN--------QGTYELKPEYKK 253 (261)
Q Consensus 194 eLld~LF~~Fe~~--~yWslK~L~~~t~QPe~yLKevL~eIa--------~lnk~Gp~--------~~~weLKpEYk~ 253 (261)
-+-..|.-+|... .-|++.+|.+.|+=|+.-|+.+|..++ +|.+.+.- ...+.|-..|.+
T Consensus 199 ~~Qa~ILllFn~~~~~~lt~~ei~~~t~i~~~~L~r~L~sL~~~~k~k~~iL~~~~~~~~~~~~~~~d~f~~N~~F~~ 276 (382)
T 3dpl_C 199 TFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVAFPKLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSL 276 (382)
T ss_dssp HHHHHHHGGGTTCTTCCEEHHHHHHHHCCCHHHHHHHHHHHHCCTTCSSCSEEESSCCSSGGGCCTTCEEEECTTCCE
T ss_pred HHHHHHHHHhccCCCCcCcHHHHHHHHCcCHHHHHHHHHHHhcccchhcceeeecCCccccCcCCCCCEEEEcCCCcC
Confidence 3455677899874 789999999999999999999999986 35544321 246777777764
No 9
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=26.34 E-value=45 Score=33.39 Aligned_cols=60 Identities=15% Similarity=0.315 Sum_probs=46.0
Q ss_pred HHHHHHHHHhhhCCCcchHHHHHHcCCcHHHHHHHHHHhh-----hhhccCC-----CCcccccchhhhc
Q 024896 194 ELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELC-----VYNKRGT-----NQGTYELKPEYKK 253 (261)
Q Consensus 194 eLld~LF~~Fe~~~yWslK~L~~~t~QPe~yLKevL~eIa-----~lnk~Gp-----~~~~weLKpEYk~ 253 (261)
-+-..|.-+|....-|++.+|.+.|+=|+..|+.+|...+ +|.+.+. -...+.|-.+|.+
T Consensus 593 ~~Qa~iLllFn~~~~lt~~ei~~~t~i~~~~l~r~L~sL~~~k~~vL~~~p~~~~v~~~d~f~lN~~f~~ 662 (759)
T 2hye_C 593 LFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIKSPKGKEVEDGDKFIFNGEFKH 662 (759)
T ss_dssp HHHHHHHHHTTSCCCEEHHHHHHHTCCCHHHHHHHHHTTTTTTTCSEEETTCSSSCCSSCEEEECCCCCC
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHHHCcCHHHHHHHHHHHHccCCceeecCCCCCCCCCCCEEEeeccccC
Confidence 3455677899999999999999999999999999998887 4554211 1356777777764
No 10
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=25.21 E-value=1.4e+02 Score=20.22 Aligned_cols=54 Identities=13% Similarity=0.051 Sum_probs=35.8
Q ss_pred HHHHHHhhhCCCcchHHHHHHcCCcHHHHHHHHHHhhh---hh---ccCCCCcccccchh
Q 024896 197 DIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCV---YN---KRGTNQGTYELKPE 250 (261)
Q Consensus 197 d~LF~~Fe~~~yWslK~L~~~t~QPe~yLKevL~eIa~---ln---k~Gp~~~~weLKpE 250 (261)
..|+.++.+..-.+..+|.+.++=+..-+...|+.... +. .++.-...|.+.++
T Consensus 3 ~~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~~~~~~gr~~~y~l~~~ 62 (81)
T 2htj_A 3 NEILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRSPLRRGMATYWFLKGE 62 (81)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEECCSSSSSCEEEESSC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeccCCCCcEEEEEChh
Confidence 34555566666799999999999888877777665543 32 12223457777654
No 11
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=23.80 E-value=1.3e+02 Score=21.14 Aligned_cols=57 Identities=14% Similarity=0.191 Sum_probs=39.1
Q ss_pred HHHHHHHHhhhCC---CcchHHHHHHcCCcHHHHHHHHHHh---hhhhccCCCCcccccchhh
Q 024896 195 LEDIMFKLFERQP---NWALKQLVQETDQPAQFLKEILNEL---CVYNKRGTNQGTYELKPEY 251 (261)
Q Consensus 195 Lld~LF~~Fe~~~---yWslK~L~~~t~QPe~yLKevL~eI---a~lnk~Gp~~~~weLKpEY 251 (261)
+...|..++.+.. .-+.++|...++=+..=++..|... ..+.+.|...+.|.+.|-.
T Consensus 11 ~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g~~~~~W~i~~~~ 73 (81)
T 1qbj_A 11 QEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWKIAVST 73 (81)
T ss_dssp HHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESSSSCEEEEC---
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCeeEEeCcH
Confidence 3444556666777 8999999999998887666665544 3344456667999998754
No 12
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=23.59 E-value=74 Score=30.87 Aligned_cols=55 Identities=11% Similarity=0.154 Sum_probs=45.4
Q ss_pred HHHHHHhhhCCCcchHHHHHHcCCcHHHHHHHHHHhhh--------hhccCCCCcccccchhhhcc
Q 024896 197 DIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCV--------YNKRGTNQGTYELKPEYKKS 254 (261)
Q Consensus 197 d~LF~~Fe~~~yWslK~L~~~t~QPe~yLKevL~eIa~--------lnk~Gp~~~~weLKpEYk~~ 254 (261)
-+|..+..++++.+.++|++.++-.+.-.+..|+.... +.+.| .+|.|.+++...
T Consensus 433 ~~iL~~l~~~~~it~~~la~~l~~s~~~~~~~L~~L~~~~~~~~glie~~g---~~y~L~~~~~~~ 495 (583)
T 3lmm_A 433 AIVLYLLFQRPFITIDVVARGLQSGKEAARNALEAARQTTVAGAPLIIAHD---GVWLLGNACREI 495 (583)
T ss_dssp HHHHHHHHHSSSBCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESEEEET---TEEEECHHHHHH
T ss_pred HHHHHHHHHCCCcCHHHHHHHhCcCHHHHHHHHHHHHhhhccccceEEEeC---CEEEECHHHHHH
Confidence 35777778999999999999999999988888888754 56666 689999987643
No 13
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=23.36 E-value=80 Score=24.47 Aligned_cols=54 Identities=11% Similarity=0.112 Sum_probs=36.2
Q ss_pred HHHHHHHHhhhCCCcchHHHHHHcCCcHHHHHHHHHHhhhh----hccCCCCcccccchh
Q 024896 195 LEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVY----NKRGTNQGTYELKPE 250 (261)
Q Consensus 195 Lld~LF~~Fe~~~yWslK~L~~~t~QPe~yLKevL~eIa~l----nk~Gp~~~~weLKpE 250 (261)
|.-+++=+-.....++.++|.++++=|..||..+|.....- ..+| .|-|.|...
T Consensus 17 l~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG--~GGy~L~~~ 74 (149)
T 1ylf_A 17 VHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRG--PGGAGLLKD 74 (149)
T ss_dssp HHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC-----CCEEESSC
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEccC--CCceEeCCC
Confidence 34444433223357999999999999999999999876542 3456 677887654
No 14
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=21.55 E-value=1.4e+02 Score=22.13 Aligned_cols=44 Identities=25% Similarity=0.388 Sum_probs=31.4
Q ss_pred CCCcchHHHHHHcCCcHHHHHHHHHHhhhh--h--ccCCCCcccccchh
Q 024896 206 QPNWALKQLVQETDQPAQFLKEILNELCVY--N--KRGTNQGTYELKPE 250 (261)
Q Consensus 206 ~~yWslK~L~~~t~QPe~yLKevL~eIa~l--n--k~Gp~~~~weLKpE 250 (261)
...++.++|.+.++=|..|+.++|...... . .+|+ .+-|.|...
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~~g~-~ggy~L~~~ 71 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGA-YGGYVLGSE 71 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC-----CCEEESSC
T ss_pred CCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEecCCC-CCceEeCCC
Confidence 357999999999999999999999877542 1 2343 356777544
No 15
>1au1_A Interferon-beta; helical cytokine, immune system, cytokine; HET: BGC G6D; 2.20A {Homo sapiens} SCOP: a.26.1.3
Probab=21.36 E-value=82 Score=25.61 Aligned_cols=44 Identities=20% Similarity=0.413 Sum_probs=33.7
Q ss_pred hHHHHHHHHHhhhCC---Ccc---hHHHHHHcCCcHHHHHHHHHHhhhhh
Q 024896 193 GELEDIMFKLFERQP---NWA---LKQLVQETDQPAQFLKEILNELCVYN 236 (261)
Q Consensus 193 ~eLld~LF~~Fe~~~---yWs---lK~L~~~t~QPe~yLKevL~eIa~ln 236 (261)
-|++..||.+|.... -|+ +..|.....|=..+|+.+|.+.+--.
T Consensus 60 ~emlqqif~LF~~~~ssa~W~~t~le~fl~~L~qQl~~Le~C~~~~~~~~ 109 (166)
T 1au1_A 60 YEMLQNIFAIFRQDSSSTGWNETIVENLLANVYHQINHLKTVLEEKLEKE 109 (166)
T ss_dssp HHHHHHHHHHHTSCCGGGTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 578999999998665 498 55566666777889999998866443
No 16
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=20.40 E-value=1.3e+02 Score=23.14 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=30.5
Q ss_pred chHHHHHHcCCcHHHHHHHHHHhhhh----hccCCCCcccccch
Q 024896 210 ALKQLVQETDQPAQFLKEILNELCVY----NKRGTNQGTYELKP 249 (261)
Q Consensus 210 slK~L~~~t~QPe~yLKevL~eIa~l----nk~Gp~~~~weLKp 249 (261)
++++|.++++=|..||..||.....- ..+| .+-|.|..
T Consensus 25 s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~rG--~GGy~Lar 66 (145)
T 1xd7_A 25 SSEIIADSVNTNPVVVRRMISLLKKADILTSRAG--VPGASLKK 66 (145)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSS--SSSCEESS
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCceEeecC--CCCceecC
Confidence 99999999999999999999887632 3456 56677754
Done!