Citrus Sinensis ID: 024896


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-
MEDDQSNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDGGAD
cccccccccccccccccccccccEEEEEccHHHHHHHHccccccccccEEEEEEEccccccccCEEEEEEccccccccccccccccccccccccCEEEEEcccccEEEEEEEEEEEEEEcccccHHHHHHHHHHHHHHHccccccEEEEcccccccccccccccccccccccccccccccccHHHccccccHHHHHHHHHHHHHccccccHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccHHHHHcccccccc
***********KGNLDTAKADRSVWLMKCPLVVAKSWQ*************************************************MFKDFV***VFSESNQGKVAMEGKVEHKFDMKPHEKNMEE********************VIDND*****************************************ELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELK*************
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MEDDQSNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDGGAD

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
General transcription factor IIF subunit 2 TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.probableQ54KT7

Prediction of Enzyme Commission Number ?

No confident prediction of EC number!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 1BBY, chain A
Confidence level:very confident
Coverage over the Query: 187-255
View the alignment between query and template
View the model in PyMOL
Template: 1F3U, chain A
Confidence level:very confident
Coverage over the Query: 9-121
View the alignment between query and template
View the model in PyMOL