Query 024897
Match_columns 261
No_of_seqs 130 out of 442
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 08:17:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024897.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024897hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5040 BMH1 14-3-3 family pro 100.0 9.8E-96 2E-100 624.9 16.5 237 4-243 2-238 (268)
2 smart00101 14_3_3 14-3-3 homol 100.0 2.9E-92 6.4E-97 631.3 26.4 240 7-249 1-242 (244)
3 PF00244 14-3-3: 14-3-3 protei 100.0 8.8E-87 1.9E-91 594.8 24.8 235 7-244 1-235 (236)
4 KOG0841 Multifunctional chaper 100.0 9.6E-84 2.1E-88 565.4 21.1 239 6-247 1-240 (247)
5 PF13424 TPR_12: Tetratricopep 96.1 0.013 2.9E-07 42.3 5.1 54 152-207 22-75 (78)
6 KOG1840 Kinesin light chain [C 92.7 8.8 0.00019 38.5 17.0 189 9-212 201-401 (508)
7 PF12862 Apc5: Anaphase-promot 91.1 2.1 4.6E-05 32.5 8.5 72 134-211 2-74 (94)
8 TIGR00990 3a0801s09 mitochondr 90.6 9.9 0.00021 38.2 15.1 52 152-205 484-535 (615)
9 PF04781 DUF627: Protein of un 82.6 4.9 0.00011 32.3 6.2 41 125-165 33-74 (111)
10 PF13414 TPR_11: TPR repeat; P 81.2 7.4 0.00016 26.8 6.2 46 152-206 20-66 (69)
11 PF13374 TPR_10: Tetratricopep 77.5 2.4 5.2E-05 26.1 2.4 23 152-174 19-41 (42)
12 PF13431 TPR_17: Tetratricopep 69.3 5.7 0.00012 24.5 2.6 33 157-198 1-33 (34)
13 PF13424 TPR_12: Tetratricopep 64.3 13 0.00028 26.2 4.1 38 173-212 1-38 (78)
14 PF07719 TPR_2: Tetratricopept 63.9 13 0.00029 21.7 3.5 25 10-34 4-28 (34)
15 KOG4162 Predicted calmodulin-b 58.6 2.5E+02 0.0054 29.8 15.7 166 19-207 335-507 (799)
16 PF13174 TPR_6: Tetratricopept 58.5 16 0.00035 21.0 3.2 27 9-35 2-28 (33)
17 PRK12794 flaF flagellar biosyn 55.3 11 0.00025 30.5 2.7 72 183-257 3-75 (122)
18 PRK14720 transcript cleavage f 55.0 70 0.0015 34.5 9.1 81 116-209 94-180 (906)
19 CHL00033 ycf3 photosystem I as 54.3 1E+02 0.0022 25.1 8.4 69 152-229 89-163 (168)
20 PRK15359 type III secretion sy 53.3 62 0.0013 26.1 6.9 47 151-206 74-120 (144)
21 PF13428 TPR_14: Tetratricopep 51.9 31 0.00067 22.0 3.9 27 9-35 3-29 (44)
22 PF13181 TPR_8: Tetratricopept 51.6 20 0.00043 21.0 2.8 26 9-34 3-28 (34)
23 PF06552 TOM20_plant: Plant sp 51.0 68 0.0015 28.1 6.9 88 132-226 32-122 (186)
24 TIGR00990 3a0801s09 mitochondr 50.6 2.8E+02 0.006 27.9 18.0 73 152-233 525-597 (615)
25 KOG4759 Ribosome recycling fac 50.1 79 0.0017 29.1 7.5 71 41-114 183-253 (263)
26 COG0233 Frr Ribosome recycling 49.1 63 0.0014 28.3 6.4 74 40-114 104-177 (187)
27 PRK12793 flaF flagellar biosyn 48.2 15 0.00032 29.7 2.2 67 187-257 6-73 (115)
28 PF01765 RRF: Ribosome recycli 47.9 72 0.0016 26.8 6.6 73 41-114 85-157 (165)
29 TIGR02917 PEP_TPR_lipo putativ 47.0 3.1E+02 0.0067 27.4 16.2 26 9-34 467-492 (899)
30 PF05010 TACC: Transforming ac 46.9 1.2E+02 0.0027 26.8 8.1 84 12-111 123-206 (207)
31 PF08424 NRDE-2: NRDE-2, neces 46.8 1.4E+02 0.003 27.7 9.0 85 151-242 118-212 (321)
32 PF14559 TPR_19: Tetratricopep 46.7 87 0.0019 21.0 5.9 44 152-204 8-51 (68)
33 PF00515 TPR_1: Tetratricopept 46.0 39 0.00085 19.8 3.5 29 10-41 4-32 (34)
34 PRK09782 bacteriophage N4 rece 45.4 4.4E+02 0.0096 28.8 15.9 25 10-34 512-536 (987)
35 CHL00033 ycf3 photosystem I as 45.1 79 0.0017 25.8 6.4 49 152-206 52-100 (168)
36 PF13371 TPR_9: Tetratricopept 44.3 51 0.0011 22.6 4.4 45 152-205 12-56 (73)
37 PF13176 TPR_7: Tetratricopept 44.0 46 0.001 20.3 3.7 25 10-34 2-26 (36)
38 PRK15363 pathogenicity island 44.0 1.3E+02 0.0028 25.5 7.5 71 149-232 83-155 (157)
39 PRK10049 pgaA outer membrane p 43.8 4E+02 0.0086 27.8 15.2 55 10-70 86-140 (765)
40 PF12569 NARP1: NMDA receptor- 43.0 3.6E+02 0.0079 27.1 18.5 61 145-206 156-222 (517)
41 cd00520 RRF Ribosome recycling 41.6 74 0.0016 27.3 5.7 73 41-114 99-171 (179)
42 COG3947 Response regulator con 41.0 43 0.00094 31.7 4.4 45 190-239 291-335 (361)
43 PF03755 YicC_N: YicC-like fam 40.8 54 0.0012 27.4 4.7 62 153-214 82-147 (159)
44 PF13432 TPR_16: Tetratricopep 38.7 84 0.0018 21.1 4.7 53 12-69 2-54 (65)
45 TIGR00496 frr ribosome recycli 38.4 1.1E+02 0.0024 26.2 6.4 73 41-114 94-166 (176)
46 TIGR02795 tol_pal_ybgF tol-pal 38.0 1.2E+02 0.0025 22.2 5.9 50 152-207 56-105 (119)
47 PRK00083 frr ribosome recyclin 37.2 1.2E+02 0.0026 26.3 6.4 73 41-114 103-175 (185)
48 KOG1840 Kinesin light chain [C 36.8 4.6E+02 0.0099 26.5 20.3 190 9-217 285-489 (508)
49 COG4499 Predicted membrane pro 36.6 71 0.0015 31.2 5.2 47 177-223 231-282 (434)
50 PF04212 MIT: MIT (microtubule 36.1 1.5E+02 0.0033 20.7 6.3 39 9-61 7-45 (69)
51 PRK02603 photosystem I assembl 35.7 1.4E+02 0.0031 24.4 6.6 49 152-206 52-100 (172)
52 PF03635 Vps35: Vacuolar prote 34.3 3.7E+02 0.008 28.5 10.5 140 10-190 595-741 (762)
53 PF12895 Apc3: Anaphase-promot 33.7 61 0.0013 23.2 3.5 44 157-203 40-83 (84)
54 KOG1107 Membrane coat complex 32.8 1.1E+02 0.0024 32.0 6.1 42 151-192 656-698 (760)
55 PF10516 SHNi-TPR: SHNi-TPR; 31.9 71 0.0015 20.5 3.1 37 133-172 2-38 (38)
56 PF13432 TPR_16: Tetratricopep 31.9 1.6E+02 0.0034 19.6 5.3 46 152-206 14-59 (65)
57 PF12688 TPR_5: Tetratrico pep 31.6 2.3E+02 0.0049 22.6 6.8 50 152-207 18-67 (120)
58 smart00028 TPR Tetratricopepti 30.9 84 0.0018 16.2 3.9 25 10-34 4-28 (34)
59 TIGR02917 PEP_TPR_lipo putativ 30.1 5.7E+02 0.012 25.5 17.1 27 8-34 602-628 (899)
60 TIGR02521 type_IV_pilW type IV 29.4 3E+02 0.0064 22.0 16.8 56 9-69 33-88 (234)
61 PLN03088 SGT1, suppressor of 28.7 1.6E+02 0.0035 27.6 6.4 46 156-205 50-97 (356)
62 KOG2002 TPR-containing nuclear 27.6 1.3E+02 0.0028 32.6 5.8 52 156-211 250-303 (1018)
63 cd02656 MIT MIT: domain contai 26.8 2.4E+02 0.0051 20.1 6.6 27 9-35 8-34 (75)
64 PRK11788 tetratricopeptide rep 26.5 4.9E+02 0.011 23.7 16.0 23 12-34 74-96 (389)
65 PF10083 DUF2321: Uncharacteri 25.6 3.9E+02 0.0085 22.8 7.3 34 25-61 83-116 (158)
66 PF07309 FlaF: Flagellar prote 24.7 54 0.0012 26.1 2.0 50 191-241 10-59 (113)
67 PF14559 TPR_19: Tetratricopep 24.6 93 0.002 20.9 3.0 53 19-76 3-55 (68)
68 KOG0553 TPR repeat-containing 24.4 2.1E+02 0.0045 27.0 6.0 43 153-204 99-141 (304)
69 PF13414 TPR_11: TPR repeat; P 24.3 2.3E+02 0.0049 19.0 6.6 45 9-57 5-49 (69)
70 COG4105 ComL DNA uptake lipopr 24.0 2.8E+02 0.006 25.5 6.6 69 158-235 87-167 (254)
71 TIGR02552 LcrH_SycD type III s 23.8 2.7E+02 0.0059 21.1 5.9 47 152-207 68-114 (135)
72 cd02682 MIT_AAA_Arch MIT: doma 23.5 3.1E+02 0.0068 20.3 6.8 26 9-34 8-33 (75)
73 KOG1126 DNA-binding cell divis 23.4 1.1E+02 0.0025 31.5 4.4 46 151-205 505-550 (638)
74 PRK15331 chaperone protein Sic 23.1 4.7E+02 0.01 22.4 7.5 70 151-235 87-156 (165)
75 KOG0687 26S proteasome regulat 22.7 5.4E+02 0.012 24.9 8.4 77 132-211 54-137 (393)
76 COG3063 PilF Tfp pilus assembl 22.2 1.1E+02 0.0023 28.0 3.5 45 152-205 86-130 (250)
77 PHA02103 hypothetical protein 22.1 32 0.0007 27.6 0.2 14 131-144 78-91 (135)
78 PF15372 DUF4600: Domain of un 21.6 3.4E+02 0.0073 22.4 6.0 49 83-145 58-106 (129)
79 KOG1156 N-terminal acetyltrans 21.1 9.4E+02 0.02 25.3 10.3 164 43-238 3-197 (700)
80 PF14490 HHH_4: Helix-hairpin- 20.1 1.6E+02 0.0035 22.2 3.7 48 128-187 38-86 (94)
81 PRK02603 photosystem I assembl 20.1 4.8E+02 0.01 21.2 8.0 13 152-164 89-101 (172)
No 1
>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]
Probab=100.00 E-value=9.8e-96 Score=624.93 Aligned_cols=237 Identities=75% Similarity=1.132 Sum_probs=231.5
Q ss_pred CCchhhHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhcCcch
Q 024897 4 PSPREENVYMAKLAEQAERYEEMVQYMEKVVASASTGEELTVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESRGNQD 83 (261)
Q Consensus 4 ~~~r~~li~~Aklaeq~eRy~Dm~~~mk~~i~~~~~~~~Ls~eERnLlSvayKn~i~~~R~s~R~l~~ieqke~~~~~~~ 83 (261)
+..|++.+|+|||++||+||++|++-||.++ ..+.+|+.+|||||||||||+||+||+|||++++++||++.+||..
T Consensus 2 s~~rE~svylAkLaeqAERYe~MvenMk~va---s~~~eLsVeeRNLlSVAYKNvigaRRaSWRivsSieQKeEsk~~~~ 78 (268)
T COG5040 2 STSREDSVYLAKLAEQAERYEEMVENMKLVA---SSGQELSVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESKGNTH 78 (268)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hccchhhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcCCChh
Confidence 3459999999999999999999999999999 6899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCcccCcchHHHHHHhhcchhhhhhhhcCchhHHHHHHHHHHHHHHHHH
Q 024897 84 HVSVIKEYRSKIEAELTEICGGILKLLDQKLVPAAAAADSKVFYLKMKGDYHRYLAEFKTGDERKVAAENTLNAYKSAQD 163 (261)
Q Consensus 84 ~~~~i~~yr~kie~EL~~~C~eii~lId~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~ 163 (261)
++.+|+.||++|+.||..||++|+++|++||||.+++.|++|||+|||||||||+|||..|+.+.++.+.+.++|+.|.+
T Consensus 79 qv~lI~eyrkkiE~EL~~icddiL~vl~~hlipaa~~~EskvFyyKMKGDYyRYlAEf~~G~~~~e~a~~slE~YK~Ase 158 (268)
T COG5040 79 QVELIKEYRKKIETELTKICDDILSVLEKHLIPAATTGESKVFYYKMKGDYYRYLAEFSVGEAREEAADSSLEAYKAASE 158 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEeecchHHHHHHHhccchHhHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCchhHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHhhHhhhhcCCCC
Q 024897 164 IANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLGEDSYKDSTLIMQLLRDNLTLWTSDMQD 243 (261)
Q Consensus 164 ~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~ilqLLrDNl~lW~~e~~~ 243 (261)
+|...||||||||||||||||||||||+|++++||.+||+|||+||++||+|+|++|+|||+||||||||||+||++.++
T Consensus 159 iA~teLpPT~PirLGLALNfSVFyYEIlnspdkAC~lAKqaFDeAI~ELDtLSEEsYkDSTLIMQLLRDNLTLWTSd~e~ 238 (268)
T COG5040 159 IATTELPPTHPIRLGLALNFSVFYYEILNSPDKACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDAEY 238 (268)
T ss_pred HhhccCCCCCchhhhheecceeeeeecccCcHHHHHHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHHhcceeeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997543
No 2
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=100.00 E-value=2.9e-92 Score=631.33 Aligned_cols=240 Identities=88% Similarity=1.267 Sum_probs=230.9
Q ss_pred hhhHHHHHHHHHHhCCHHHHHHHHHHHHhhhcC-C-CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhcCcchh
Q 024897 7 REENVYMAKLAEQAERYEEMVQYMEKVVASAST-G-EELTVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESRGNQDH 84 (261)
Q Consensus 7 r~~li~~Aklaeq~eRy~Dm~~~mk~~i~~~~~-~-~~Ls~eERnLlSvayKn~i~~~R~s~R~l~~ieqke~~~~~~~~ 84 (261)
|++++|+|||++|||||+||+.+||+++ +. + .+||.||||||||||||+||++|+|||+|+++++++..+|++.+
T Consensus 1 re~~v~~Aklaeq~eRyddm~~~mk~~~---~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~ 77 (244)
T smart00101 1 REENVYMAKLAEQAERYEEMVEFMEKVA---KTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDH 77 (244)
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHH---hhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHH
Confidence 6899999999999999999999999999 44 5 59999999999999999999999999999999999887888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCcccCcchHHHHHHhhcchhhhhhhhcCchhHHHHHHHHHHHHHHHHHH
Q 024897 85 VSVIKEYRSKIEAELTEICGGILKLLDQKLVPAAAAADSKVFYLKMKGDYHRYLAEFKTGDERKVAAENTLNAYKSAQDI 164 (261)
Q Consensus 85 ~~~i~~yr~kie~EL~~~C~eii~lId~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~ 164 (261)
++.+++||++|++||..+|++||++||++|||.+++++++|||+|||||||||+|||..|+++++++++|+++|++|+++
T Consensus 78 ~~~~~~yr~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~ 157 (244)
T smart00101 78 VASIKEYRGKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDI 157 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCchhHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHhhHhhhhcCCCCC
Q 024897 165 ANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLGEDSYKDSTLIMQLLRDNLTLWTSDMQDD 244 (261)
Q Consensus 165 a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~ilqLLrDNl~lW~~e~~~~ 244 (261)
|+.+|||||||||||+||||||||||+|++++||++|++|||+|++++|+++|++|+|+|+|||||||||++|+++.+++
T Consensus 158 a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ld~l~ee~y~dstlImqLLrDNL~lW~~~~~~~ 237 (244)
T smart00101 158 ALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDLQDD 237 (244)
T ss_pred HHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccChhhhHHHHHHHHHHHHHHHhccCCCCcc
Confidence 99899999999999999999999999999999999999999999999999999999999999999999999999997777
Q ss_pred Ccccc
Q 024897 245 GTDEI 249 (261)
Q Consensus 245 ~~~~~ 249 (261)
++.++
T Consensus 238 ~~~~~ 242 (244)
T smart00101 238 GADEI 242 (244)
T ss_pred hhhhh
Confidence 66553
No 3
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=100.00 E-value=8.8e-87 Score=594.81 Aligned_cols=235 Identities=68% Similarity=1.098 Sum_probs=223.0
Q ss_pred hhhHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhcCcchhHH
Q 024897 7 REENVYMAKLAEQAERYEEMVQYMEKVVASASTGEELTVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESRGNQDHVS 86 (261)
Q Consensus 7 r~~li~~Aklaeq~eRy~Dm~~~mk~~i~~~~~~~~Ls~eERnLlSvayKn~i~~~R~s~R~l~~ieqke~~~~~~~~~~ 86 (261)
|++++|||||++|||||+||+++||+++ ..+++||.|||||||+||||+||++|+|||+|++++++++.+|++.+++
T Consensus 1 Re~li~~Aklaeq~eRy~dmv~~mk~~~---~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~ 77 (236)
T PF00244_consen 1 REELIYLAKLAEQAERYDDMVEYMKQLI---EMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVK 77 (236)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHH---HTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHH---ccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHH
Confidence 7999999999999999999999999999 5799999999999999999999999999999999999999888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCcccCcchHHHHHHhhcchhhhhhhhcCchhHHHHHHHHHHHHHHHHHHHH
Q 024897 87 VIKEYRSKIEAELTEICGGILKLLDQKLVPAAAAADSKVFYLKMKGDYHRYLAEFKTGDERKVAAENTLNAYKSAQDIAN 166 (261)
Q Consensus 87 ~i~~yr~kie~EL~~~C~eii~lId~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~ 166 (261)
.+++||++|++||..+|++|+++||++|+|.+++++++|||+|||||||||+|||..|+++++++++|.++|++|+++|+
T Consensus 78 ~i~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~ 157 (236)
T PF00244_consen 78 LIKDYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAK 157 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCchhHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHhhHhhhhcCCCCC
Q 024897 167 AELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLGEDSYKDSTLIMQLLRDNLTLWTSDMQDD 244 (261)
Q Consensus 167 ~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~ilqLLrDNl~lW~~e~~~~ 244 (261)
.+||||||+||||+||||||||||+|++++||+||++|||+|++++|+++|++|+|+++|||||||||++|+++.+++
T Consensus 158 ~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~l~e~~~~d~~~ilqlLrdNl~lW~~e~~~~ 235 (236)
T PF00244_consen 158 KELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDTLSEESYKDSTLILQLLRDNLTLWTSEEEEE 235 (236)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGGSHTTTHHHHHHHHHHHHHHHHHHTTT----
T ss_pred cccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHhcccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987765
No 4
>KOG0841 consensus Multifunctional chaperone (14-3-3 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.6e-84 Score=565.37 Aligned_cols=239 Identities=76% Similarity=1.127 Sum_probs=232.7
Q ss_pred chhhHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhcCcchhH
Q 024897 6 PREENVYMAKLAEQAERYEEMVQYMEKVVASASTGEELTVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESRGNQDHV 85 (261)
Q Consensus 6 ~r~~li~~Aklaeq~eRy~Dm~~~mk~~i~~~~~~~~Ls~eERnLlSvayKn~i~~~R~s~R~l~~ieqke~~~~~~~~~ 85 (261)
+|+++|++|+|++|++||+||+.+||.++ +.+.+||.+|||||||+||||||+||+|||+|++||||++.+|++.++
T Consensus 1 ~~~~~v~~akl~eqaery~~m~~~Mk~v~---~~~~eLtveernllsvayknVigarrasWriisSiEqKees~~~e~~v 77 (247)
T KOG0841|consen 1 EREELVYKAKLAEQAERYDEMVEAMKKVA---ELDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESKGNEEKV 77 (247)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHhhc---ccchhhhHHHHhhhhhhhccccchhHHHHHHhhhhhhcccCCCcchHH
Confidence 48899999999999999999999999999 689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCcccC-cchHHHHHHhhcchhhhhhhhcCchhHHHHHHHHHHHHHHHHHH
Q 024897 86 SVIKEYRSKIEAELTEICGGILKLLDQKLVPAAAA-ADSKVFYLKMKGDYHRYLAEFKTGDERKVAAENTLNAYKSAQDI 164 (261)
Q Consensus 86 ~~i~~yr~kie~EL~~~C~eii~lId~~Lip~~~~-~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~ 164 (261)
..+..||++|+.||..+|++++.++|.+|+|+++. .+++|||+|||||||||++||.+|++|++++++++++|+.|+++
T Consensus 78 ~~i~~yr~~vE~El~~ic~~iL~lld~~Li~sa~~~~es~vf~~kmKgdy~rylae~~sg~erke~~~~sl~aYk~a~~i 157 (247)
T KOG0841|consen 78 KMIKEYRQKVETELAKICDDILSLLDKHLIPSATLPGESKVFYLKMKGDYYRYLAEFASGDERKEAADQSLEAYKEASEI 157 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeeeeccchhHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988 78999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCchhHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHhhHhhhhcCCCCC
Q 024897 165 ANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLGEDSYKDSTLIMQLLRDNLTLWTSDMQDD 244 (261)
Q Consensus 165 a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~ilqLLrDNl~lW~~e~~~~ 244 (261)
|+..|+||||||||||||||||||||+|.|++||.|||+|||+||.++|++++++|+|||+||||||||||+|+++.+++
T Consensus 158 a~~~l~PthPirLgLaLnfSvf~yeilnsPe~ac~lak~a~d~ai~eldtl~e~sykdStlimqllrdnltlWts~~~~~ 237 (247)
T KOG0841|consen 158 AKAELQPTHPIRLGLALNFSVFYYEILNSPERACSLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGD 237 (247)
T ss_pred HHhcCCCCCchHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhhccccHHHHhhhHHHHHHHHHhhhhhccCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred Ccc
Q 024897 245 GTD 247 (261)
Q Consensus 245 ~~~ 247 (261)
+..
T Consensus 238 ~~~ 240 (247)
T KOG0841|consen 238 EKE 240 (247)
T ss_pred ccc
Confidence 553
No 5
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.10 E-value=0.013 Score=42.27 Aligned_cols=54 Identities=28% Similarity=0.433 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchhHHHhhhHHHHHHHHhCChHHHHHHHHHHHHH
Q 024897 152 ENTLNAYKSAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 207 (261)
Q Consensus 152 ~~a~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~ 207 (261)
+.|...|++|+++ .+.+++.||...-...|.+..++. +|+.++|+...++|++-
T Consensus 22 ~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 22 DEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh
Confidence 5799999999999 557899888888888888888777 79999999999998864
No 6
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=92.68 E-value=8.8 Score=38.48 Aligned_cols=189 Identities=17% Similarity=0.188 Sum_probs=124.2
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHhh-hcCC--CCCC-HHHHHHHHHHHhhhhhhhhHHHHHHH-HHhhhhhhcCcc-
Q 024897 9 ENVYMAKLAEQAERYEEMVQYMEKVVAS-ASTG--EELT-VEERNLLSVAYKNVIGARRASWRIVS-SIEQKEESRGNQ- 82 (261)
Q Consensus 9 ~li~~Aklaeq~eRy~Dm~~~mk~~i~~-~~~~--~~Ls-~eERnLlSvayKn~i~~~R~s~R~l~-~ieqke~~~~~~- 82 (261)
.+.++|.+..+.|+|+..+.-.+..+.. +... ..+- ..-.+-|.+.|-++ +..+.|..+.. ++...+...|..
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~-~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSL-GKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4556888888889999999999888742 1111 1222 22344466666554 45677777774 344445555532
Q ss_pred -hhHHHHH-----HHHHHHHHHHHHHHHHHHHHhhhcccCcccCcchHHHHHHhhcchhhhhhhhcCchhHHHHHHHHHH
Q 024897 83 -DHVSVIK-----EYRSKIEAELTEICGGILKLLDQKLVPAAAAADSKVFYLKMKGDYHRYLAEFKTGDERKVAAENTLN 156 (261)
Q Consensus 83 -~~~~~i~-----~yr~kie~EL~~~C~eii~lId~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~ 156 (261)
.....+. -|+.-=-.|-...|..+++|..+.+. +..++..-- +.++..-.....-.+.|..
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~--~~~~~v~~~-----------l~~~~~~~~~~~~~Eea~~ 346 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLG--ASHPEVAAQ-----------LSELAAILQSMNEYEEAKK 346 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhc--cChHHHHHH-----------HHHHHHHHHHhcchhHHHH
Confidence 2222222 23444456788999999999988433 333332221 2222222222223577899
Q ss_pred HHHHHHHHHHhcCCCCCchhHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhh
Q 024897 157 AYKSAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISEL 212 (261)
Q Consensus 157 aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~l 212 (261)
.|+.|+.+....+.+.||.-=|+--|+++.||- +|..++|.++.++|+..+-+..
T Consensus 347 l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~-~gk~~ea~~~~k~ai~~~~~~~ 401 (508)
T KOG1840|consen 347 LLQKALKIYLDAPGEDNVNLAKIYANLAELYLK-MGKYKEAEELYKKAIQILRELL 401 (508)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHhcc
Confidence 999999999888999999999999999999886 7999999999999988775543
No 7
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.06 E-value=2.1 Score=32.48 Aligned_cols=72 Identities=24% Similarity=0.301 Sum_probs=53.0
Q ss_pred hhhhhhhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHh-hhHHHHHHHHhCChHHHHHHHHHHHHHHHHh
Q 024897 134 YHRYLAEFKTGDERKVAAENTLNAYKSAQDIANAELAPTHPIRLGLA-LNFSVFYYEILNSPDRACNLAKQAFDEAISE 211 (261)
Q Consensus 134 yyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgLa-LN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ 211 (261)
|.+|+--+..++- ..|.+.....++.+.....+.++..+..+ ||.+.+++. +|++++|+...++|++-|-..
T Consensus 2 ~l~~~~~~~~~dy-----~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 2 YLRYLNALRSGDY-----SEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHHHHHHcCCH-----HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHH
Confidence 4466655555542 45788888888888777777655555554 788887776 699999999999888888664
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=90.55 E-value=9.9 Score=38.21 Aligned_cols=52 Identities=15% Similarity=0.220 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchhHHHhhhHHHHHHHHhCChHHHHHHHHHHH
Q 024897 152 ENTLNAYKSAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 205 (261)
Q Consensus 152 ~~a~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~af 205 (261)
+.|...|++|+.+... ..+.++..++ .+|.+..+|+-.|+.++|..+.++|+
T Consensus 484 ~~A~~~~~~Al~l~p~-~~~~~~~~~~-l~~~a~~~~~~~~~~~eA~~~~~kAl 535 (615)
T TIGR00990 484 DEAIEKFDTAIELEKE-TKPMYMNVLP-LINKALALFQWKQDFIEAENLCEKAL 535 (615)
T ss_pred HHHHHHHHHHHhcCCc-cccccccHHH-HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5677777777765432 3333332222 34445555655677777777666654
No 9
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=82.59 E-value=4.9 Score=32.27 Aligned_cols=41 Identities=12% Similarity=0.186 Sum_probs=33.4
Q ss_pred HHHHHhhcchhhhhhhhcCc-hhHHHHHHHHHHHHHHHHHHH
Q 024897 125 VFYLKMKGDYHRYLAEFKTG-DERKVAAENTLNAYKSAQDIA 165 (261)
Q Consensus 125 Vfy~KmkgDyyRYlaE~~~~-~~~~~~~~~a~~aY~~A~~~a 165 (261)
.|-+...|+.|..+|....+ +-+....-.|.+||.+|..++
T Consensus 33 ~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Ls 74 (111)
T PF04781_consen 33 WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELS 74 (111)
T ss_pred HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccC
Confidence 48889999999999998655 556678889999999998543
No 10
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=81.15 E-value=7.4 Score=26.77 Aligned_cols=46 Identities=17% Similarity=0.306 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchhHHHhhhHHHHHHHHhC-ChHHHHHHHHHHHH
Q 024897 152 ENTLNAYKSAQDIANAELAPTHPIRLGLALNFSVFYYEILN-SPDRACNLAKQAFD 206 (261)
Q Consensus 152 ~~a~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~-~~~~A~~iAk~afd 206 (261)
+.|...|++|+++ +|-.-.+..|.++-++. +| ++++|+...++|+.
T Consensus 20 ~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 20 EEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHH--------STTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHH
Confidence 5789999999975 34444577888887776 57 79999998888764
No 11
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=77.46 E-value=2.4 Score=26.08 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCc
Q 024897 152 ENTLNAYKSAQDIANAELAPTHP 174 (261)
Q Consensus 152 ~~a~~aY~~A~~~a~~~L~pt~p 174 (261)
+.|...|++|+.+.+.-++|.||
T Consensus 19 ~~A~~~~~~al~~~~~~~G~~Hp 41 (42)
T PF13374_consen 19 EEALELLEEALEIRERLLGPDHP 41 (42)
T ss_dssp HHHHHHHHHHHHHH---------
T ss_pred chhhHHHHHHHHHHHHHhccccc
Confidence 57899999999999988899998
No 12
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=69.34 E-value=5.7 Score=24.53 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCCCCCchhHHHhhhHHHHHHHHhCChHHHH
Q 024897 157 AYKSAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRAC 198 (261)
Q Consensus 157 aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~ 198 (261)
+|++|++ +.|.|| ....|++++|+. .|+.++|+
T Consensus 1 ~y~kAie-----~~P~n~---~a~~nla~~~~~-~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIE-----LNPNNA---EAYNNLANLYLN-QGDYEEAI 33 (34)
T ss_pred ChHHHHH-----HCCCCH---HHHHHHHHHHHH-CcCHHhhc
Confidence 3677765 445554 456788888886 69999986
No 13
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=64.27 E-value=13 Score=26.22 Aligned_cols=38 Identities=29% Similarity=0.321 Sum_probs=30.6
Q ss_pred CchhHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhh
Q 024897 173 HPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISEL 212 (261)
Q Consensus 173 ~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~l 212 (261)
||.......|.+..|++ +|+.++|+...++|++- ...+
T Consensus 1 H~~~a~~~~~la~~~~~-~~~~~~A~~~~~~al~~-~~~~ 38 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRE-LGRYDEALDYYEKALDI-EEQL 38 (78)
T ss_dssp -HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-HHHT
T ss_pred CHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH-HHHH
Confidence 78888889999998886 79999999999999887 5543
No 14
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=63.89 E-value=13 Score=21.66 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Q 024897 10 NVYMAKLAEQAERYEEMVQYMEKVV 34 (261)
Q Consensus 10 li~~Aklaeq~eRy~Dm~~~mk~~i 34 (261)
+..++.+.-+.|+|++.++++++.+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5678999999999999999999998
No 15
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=58.61 E-value=2.5e+02 Score=29.80 Aligned_cols=166 Identities=18% Similarity=0.221 Sum_probs=86.8
Q ss_pred HhCCHHHHHHHHHHHHhhhcCCCCCCHHHH-HHHHHHHhhhhhhhhHHHHHHHHHhhhhhhcCcchhHHHHHHHHH----
Q 024897 19 QAERYEEMVQYMEKVVASASTGEELTVEER-NLLSVAYKNVIGARRASWRIVSSIEQKEESRGNQDHVSVIKEYRS---- 93 (261)
Q Consensus 19 q~eRy~Dm~~~mk~~i~~~~~~~~Ls~eER-nLlSvayKn~i~~~R~s~R~l~~ieqke~~~~~~~~~~~i~~yr~---- 93 (261)
.+|+|....+++.+.+. ..++.-|| +.++.+|-- .++.-.+.+++..--.+.+ .-+.....+--++.
T Consensus 335 ~~g~f~~lae~fE~~~~-----~~~~~~e~w~~~als~sa-ag~~s~Av~ll~~~~~~~~--~ps~~s~~Lmasklc~e~ 406 (799)
T KOG4162|consen 335 RCGQFEVLAEQFEQALP-----FSFGEHERWYQLALSYSA-AGSDSKAVNLLRESLKKSE--QPSDISVLLMASKLCIER 406 (799)
T ss_pred HHHHHHHHHHHHHHHhH-----hhhhhHHHHHHHHHHHHH-hccchHHHHHHHhhccccc--CCCcchHHHHHHHHHHhc
Confidence 45777777777776651 22333333 233333332 2333445555432111111 01112222222222
Q ss_pred -HHHHHHHHHHHHHHHHhhhcccCcccCcchHHHHHHhhcchhhhhhhhc-CchhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024897 94 -KIEAELTEICGGILKLLDQKLVPAAAAADSKVFYLKMKGDYHRYLAEFK-TGDERKVAAENTLNAYKSAQDIANAELAP 171 (261)
Q Consensus 94 -kie~EL~~~C~eii~lId~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~-~~~~~~~~~~~a~~aY~~A~~~a~~~L~p 171 (261)
+.-+|..++...++++... ....-+---+++-|=-|-..|--. ..++|...-.++.++|++|.+ +.|
T Consensus 407 l~~~eegldYA~kai~~~~~------~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~-----~d~ 475 (799)
T KOG4162|consen 407 LKLVEEGLDYAQKAISLLGG------QRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ-----FDP 475 (799)
T ss_pred hhhhhhHHHHHHHHHHHhhh------hhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh-----cCC
Confidence 2345666666666663311 111122223456677777666554 456788888899999999974 678
Q ss_pred CCchhHHHhhhHHHHHHHHhCChHHHHHHHHHHHHH
Q 024897 172 THPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 207 (261)
Q Consensus 172 t~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~ 207 (261)
+|| -...+.|++|-+ .++.+.|.+.++.++.-
T Consensus 476 ~dp---~~if~lalq~A~-~R~l~sAl~~~~eaL~l 507 (799)
T KOG4162|consen 476 TDP---LVIFYLALQYAE-QRQLTSALDYAREALAL 507 (799)
T ss_pred CCc---hHHHHHHHHHHH-HHhHHHHHHHHHHHHHh
Confidence 999 234555666554 57777777777766543
No 16
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=58.49 E-value=16 Score=21.05 Aligned_cols=27 Identities=15% Similarity=0.388 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 024897 9 ENVYMAKLAEQAERYEEMVQYMEKVVA 35 (261)
Q Consensus 9 ~li~~Aklaeq~eRy~Dm~~~mk~~i~ 35 (261)
-+..+|.+....|++++.+..++.++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 356789999999999999999999984
No 17
>PRK12794 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Probab=55.34 E-value=11 Score=30.51 Aligned_cols=72 Identities=17% Similarity=0.197 Sum_probs=45.2
Q ss_pred HHHH-HHHHhCChHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHhhHhhhhcCCCCCCccccccCCCCch
Q 024897 183 FSVF-YYEILNSPDRACNLAKQAFDEAISELDTLGEDSYKDSTLIMQLLRDNLTLWTSDMQDDGTDEIKEAPKPEE 257 (261)
Q Consensus 183 ~SVF-~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~ilqLLrDNl~lW~~e~~~~~~~~~~~~~~~~~ 257 (261)
+|.+ |-++......+.++=..+|..+...|....+..-.+....++-|..|..+|+--..+-.+ ++++-|.|
T Consensus 3 ~a~~AY~~~~~~~~~~Re~E~~~l~~~~~~L~~a~~~~~~~~~~~~~AL~~NrrLWt~~~~dl~~---~~N~LP~e 75 (122)
T PRK12794 3 MAAQAYARAAQPTRTPRETEYQLLAKATRQLKDAQTNGPDRFAALAEALHFNRKLWSIFASDVAD---PDNPLPIE 75 (122)
T ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhcC---CCCCCCHH
Confidence 3344 444555556666666777888888777665443233367779999999999965433332 44555554
No 18
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=55.05 E-value=70 Score=34.47 Aligned_cols=81 Identities=14% Similarity=-0.004 Sum_probs=53.4
Q ss_pred CcccCcchHHHHHHhhcchhhh------hhhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHhhhHHHHHHH
Q 024897 116 PAAAAADSKVFYLKMKGDYHRY------LAEFKTGDERKVAAENTLNAYKSAQDIANAELAPTHPIRLGLALNFSVFYYE 189 (261)
Q Consensus 116 p~~~~~eskVfy~KmkgDyyRY------laE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yE 189 (261)
|.........||++..|||+.- +|++-.. -.-.++|..+|+++++ +.|.||. +||+=-|+|.
T Consensus 94 ~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk---~g~~~ka~~~yer~L~-----~D~~n~~----aLNn~AY~~a 161 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLYGENKLALRTLAEAYAK---LNENKKLKGVWERLVK-----ADRDNPE----IVKKLATSYE 161 (906)
T ss_pred ccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHH---cCChHHHHHHHHHHHh-----cCcccHH----HHHHHHHHHH
Confidence 3333445667888888887643 3444211 1123578889998885 4477875 5666555555
Q ss_pred HhCChHHHHHHHHHHHHHHH
Q 024897 190 ILNSPDRACNLAKQAFDEAI 209 (261)
Q Consensus 190 i~~~~~~A~~iAk~afd~Ai 209 (261)
-. +.++|..++++|+.--+
T Consensus 162 e~-dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 162 EE-DKEKAITYLKKAIYRFI 180 (906)
T ss_pred Hh-hHHHHHHHHHHHHHHHH
Confidence 55 99999999999987644
No 19
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=54.29 E-value=1e+02 Score=25.13 Aligned_cols=69 Identities=16% Similarity=0.067 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchhHHHhhhHHHHHH------HHhCChHHHHHHHHHHHHHHHHhhccCCCCchHHHHH
Q 024897 152 ENTLNAYKSAQDIANAELAPTHPIRLGLALNFSVFYY------EILNSPDRACNLAKQAFDEAISELDTLGEDSYKDSTL 225 (261)
Q Consensus 152 ~~a~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~y------Ei~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~ 225 (261)
+.|...|++|+.+ .|.+ .+.-.|.++.++ ..+|+.+.|.....+|+.---. .-.++.+.+.++..
T Consensus 89 ~eA~~~~~~Al~~-----~~~~---~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-a~~~~p~~~~~~~~ 159 (168)
T CHL00033 89 TKALEYYFQALER-----NPFL---PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQ-AIALAPGNYIEAQN 159 (168)
T ss_pred HHHHHHHHHHHHh-----CcCc---HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHH-HHHhCcccHHHHHH
Confidence 5688889888864 3333 233445555555 2478888887777666532222 22345556666655
Q ss_pred HHHH
Q 024897 226 IMQL 229 (261)
Q Consensus 226 ilqL 229 (261)
-|..
T Consensus 160 ~~~~ 163 (168)
T CHL00033 160 WLKI 163 (168)
T ss_pred HHHH
Confidence 4443
No 20
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=53.34 E-value=62 Score=26.15 Aligned_cols=47 Identities=21% Similarity=0.263 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCchhHHHhhhHHHHHHHHhCChHHHHHHHHHHHH
Q 024897 151 AENTLNAYKSAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 206 (261)
Q Consensus 151 ~~~a~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd 206 (261)
.+.|..+|+.|+. +.|.||-- ..|.++-+. -+|++++|+.....|..
T Consensus 74 ~~~A~~~y~~Al~-----l~p~~~~a---~~~lg~~l~-~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 74 YTTAINFYGHALM-----LDASHPEP---VYQTGVCLK-MMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHh-----cCCCCcHH---HHHHHHHHH-HcCCHHHHHHHHHHHHH
Confidence 3568889998885 45556521 222222222 37999998886666654
No 21
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=51.91 E-value=31 Score=21.96 Aligned_cols=27 Identities=11% Similarity=0.177 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 024897 9 ENVYMAKLAEQAERYEEMVQYMEKVVA 35 (261)
Q Consensus 9 ~li~~Aklaeq~eRy~Dm~~~mk~~i~ 35 (261)
-+..+|+...+.|++++.+..+++++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356789999999999999999999993
No 22
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=51.65 E-value=20 Score=21.03 Aligned_cols=26 Identities=35% Similarity=0.553 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHH
Q 024897 9 ENVYMAKLAEQAERYEEMVQYMEKVV 34 (261)
Q Consensus 9 ~li~~Aklaeq~eRy~Dm~~~mk~~i 34 (261)
-+..++++..+.|.|+.++.++++.+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35678999999999999999999988
No 23
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=51.03 E-value=68 Score=28.07 Aligned_cols=88 Identities=25% Similarity=0.328 Sum_probs=51.2
Q ss_pred cchhhhhhhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCCc---hhHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHH
Q 024897 132 GDYHRYLAEFKTGDERKVAAENTLNAYKSAQDIANAELAPTHP---IRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 208 (261)
Q Consensus 132 gDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~p---irLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~A 208 (261)
|...=-++-|..+.+.++.++.|..-|++|+.+ .|..+ .-||.|+--=-|+..-..+.+.=.+.|...|+.|
T Consensus 32 G~ALLELAqfk~g~es~~miedAisK~eeAL~I-----~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkA 106 (186)
T PF06552_consen 32 GGALLELAQFKQGPESKKMIEDAISKFEEALKI-----NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKA 106 (186)
T ss_dssp HHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH------TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc-----CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH
Confidence 333333788888888888999999999999875 23222 4466665544443322223333355677778888
Q ss_pred HHhhccCCCCchHHHHHH
Q 024897 209 ISELDTLGEDSYKDSTLI 226 (261)
Q Consensus 209 i~~ld~l~ee~y~ds~~i 226 (261)
... .-+.+.|+-+..+
T Consensus 107 v~~--~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 107 VDE--DPNNELYRKSLEM 122 (186)
T ss_dssp HHH---TT-HHHHHHHHH
T ss_pred Hhc--CCCcHHHHHHHHH
Confidence 774 3345668766543
No 24
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=50.58 E-value=2.8e+02 Score=27.86 Aligned_cols=73 Identities=18% Similarity=0.167 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchhHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHH
Q 024897 152 ENTLNAYKSAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLGEDSYKDSTLIMQLLR 231 (261)
Q Consensus 152 ~~a~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~ilqLLr 231 (261)
+.|.+.|++|+. +.|.++. ..++.+-.++. .|+.++|+....+|..-+-..-+-+.--+|.+++.+-..++
T Consensus 525 ~eA~~~~~kAl~-----l~p~~~~---a~~~la~~~~~-~g~~~eAi~~~e~A~~l~~~~~e~~~a~~~~~a~~~~~~~~ 595 (615)
T TIGR00990 525 IEAENLCEKALI-----IDPECDI---AVATMAQLLLQ-QGDVDEALKLFERAAELARTEGELVQAISYAEATRTQIQVQ 595 (615)
T ss_pred HHHHHHHHHHHh-----cCCCcHH---HHHHHHHHHHH-ccCHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666664 4565653 22333444444 89999999988887766543222222234666666644444
Q ss_pred hh
Q 024897 232 DN 233 (261)
Q Consensus 232 DN 233 (261)
.+
T Consensus 596 ~~ 597 (615)
T TIGR00990 596 ED 597 (615)
T ss_pred HH
Confidence 44
No 25
>KOG4759 consensus Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=50.13 E-value=79 Score=29.10 Aligned_cols=71 Identities=24% Similarity=0.296 Sum_probs=51.9
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 024897 41 EELTVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESRGNQDHVSVIKEYRSKIEAELTEICGGILKLLDQKL 114 (261)
Q Consensus 41 ~~Ls~eERnLlSvayKn~i~~~R~s~R~l~~ieqke~~~~~~~~~~~i~~yr~kie~EL~~~C~eii~lId~~L 114 (261)
|+.|.|-|.-|+-..+.+....|.|+|-+..=--+...+... ..-.+-..+++.||..+.++.+..+|..|
T Consensus 183 P~~T~E~Re~laK~~~~~~ee~K~slr~ir~~~~kk~~k~~~---~~~~D~vkkae~~l~~l~k~~v~~ld~ll 253 (263)
T KOG4759|consen 183 PPVTKESREKLAKVLKRYFEEYKQSLRKIRTKSIKKSKKNKK---SLSEDEVKKAEAELQKLAKDAVNKLDDLL 253 (263)
T ss_pred CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999986422222211111 02245557889999999999998888765
No 26
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=49.06 E-value=63 Score=28.28 Aligned_cols=74 Identities=18% Similarity=0.184 Sum_probs=50.6
Q ss_pred CCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 024897 40 GEELTVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESRGNQDHVSVIKEYRSKIEAELTEICGGILKLLDQKL 114 (261)
Q Consensus 40 ~~~Ls~eERnLlSvayKn~i~~~R~s~R~l~~ieqke~~~~~~~~~~~i~~yr~kie~EL~~~C~eii~lId~~L 114 (261)
-|+||.|-|.=|..-.|.+.-..|-|.|-+.-=-. ...+........-++-.++.++++..+.++.+.-||..+
T Consensus 104 ~P~lTeErRkelvK~~k~~~EeakvaiRniRrda~-d~iKK~~K~~~isEDe~k~~e~~iQKlTd~yi~~iD~~~ 177 (187)
T COG0233 104 LPPLTEERRKELVKVAKKYAEEAKVAVRNIRRDAN-DKIKKLEKDKEISEDEVKKAEEEIQKLTDEYIKKIDELL 177 (187)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999888888888842110 011111111113356667888888888888888888765
No 27
>PRK12793 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Probab=48.15 E-value=15 Score=29.65 Aligned_cols=67 Identities=30% Similarity=0.389 Sum_probs=48.1
Q ss_pred HHHHhCChH-HHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHhhHhhhhcCCCCCCccccccCCCCch
Q 024897 187 YYEILNSPD-RACNLAKQAFDEAISELDTLGEDSYKDSTLIMQLLRDNLTLWTSDMQDDGTDEIKEAPKPEE 257 (261)
Q Consensus 187 ~yEi~~~~~-~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~ilqLLrDNl~lW~~e~~~~~~~~~~~~~~~~~ 257 (261)
|-+++.+.. .+.++=.++|..++..|....+..- ++...++-|..|-.+|+--..+-.+ ++++=|.+
T Consensus 6 Ya~~~~~s~~~~R~~E~~~l~r~~~~L~~a~~~~~-~~~~~~eAL~~NrrLWt~~~~Dl~~---p~N~LP~e 73 (115)
T PRK12793 6 YAEVMEDSVASARERERQAFDRSIDLLEAARAKGA-YSREAIEALYFTRRLWTVLIEDLGS---PENALPEE 73 (115)
T ss_pred HHHHHHHcccChHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHhCC---CCCCCCHH
Confidence 566777666 7777888899999998877665544 7778889999999999965333333 34455554
No 28
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=47.90 E-value=72 Score=26.84 Aligned_cols=73 Identities=19% Similarity=0.207 Sum_probs=48.2
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 024897 41 EELTVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESRGNQDHVSVIKEYRSKIEAELTEICGGILKLLDQKL 114 (261)
Q Consensus 41 ~~Ls~eERnLlSvayKn~i~~~R~s~R~l~~ieqke~~~~~~~~~~~i~~yr~kie~EL~~~C~eii~lId~~L 114 (261)
|.+|.|-|.-|....|...-..|.++|-+..--.+.-.+ .......-++-..+++++|..+-++.+.-||..+
T Consensus 85 P~~T~E~R~~l~k~~k~~~E~~k~~iR~iR~~~~~~lkk-~~~~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~ 157 (165)
T PF01765_consen 85 PPPTEERRKELVKQAKKIAEEAKVSIRNIRRDAMKKLKK-LKKSKEISEDDIKKLEKEIQKLTDKYIKKIDELL 157 (165)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999986422221100 0000012345556777788877777777777644
No 29
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=46.97 E-value=3.1e+02 Score=27.39 Aligned_cols=26 Identities=8% Similarity=0.037 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHH
Q 024897 9 ENVYMAKLAEQAERYEEMVQYMEKVV 34 (261)
Q Consensus 9 ~li~~Aklaeq~eRy~Dm~~~mk~~i 34 (261)
-+..++.+..+.|+|++.+.++.+++
T Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~a~ 492 (899)
T TIGR02917 467 LHNLLGAIYLGKGDLAKAREAFEKAL 492 (899)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34556666666677777777766666
No 30
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=46.86 E-value=1.2e+02 Score=26.82 Aligned_cols=84 Identities=23% Similarity=0.290 Sum_probs=49.3
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhcCcchhHHHHHHH
Q 024897 12 YMAKLAEQAERYEEMVQYMEKVVASASTGEELTVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESRGNQDHVSVIKEY 91 (261)
Q Consensus 12 ~~Aklaeq~eRy~Dm~~~mk~~i~~~~~~~~Ls~eERnLlSvayKn~i~~~R~s~R~l~~ieqke~~~~~~~~~~~i~~y 91 (261)
|+++|..+..||+-|-.....-+ +..++|-.-+-..++.-+...+..+|--..--+ + .-..+ .-
T Consensus 123 y~~~l~~~eqry~aLK~hAeekL-------~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~-------S-Le~~L-eQ 186 (207)
T PF05010_consen 123 YEERLKKEEQRYQALKAHAEEKL-------EKANEEIAQVRSKHQAELLALQASLKKEEMKVQ-------S-LEESL-EQ 186 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-------H-HHHHH-HH
Confidence 67777777788877655543333 245566666666777777777777776421000 0 00011 12
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 024897 92 RSKIEAELTEICGGILKLLD 111 (261)
Q Consensus 92 r~kie~EL~~~C~eii~lId 111 (261)
+.+=..||..||+++|.=++
T Consensus 187 K~kEn~ELtkICDeLI~k~~ 206 (207)
T PF05010_consen 187 KTKENEELTKICDELISKMG 206 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 23445789999999987543
No 31
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=46.77 E-value=1.4e+02 Score=27.69 Aligned_cols=85 Identities=14% Similarity=0.225 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHhcC----------CCCCchhHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCCCch
Q 024897 151 AENTLNAYKSAQDIANAEL----------APTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLGEDSY 220 (261)
Q Consensus 151 ~~~a~~aY~~A~~~a~~~L----------~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y 220 (261)
+......|.+++....... +.+.-..|-+.+++++|..+ .|..+.|+.+.|..++-..-.-+.+.....
T Consensus 118 v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~-aG~~E~Ava~~Qa~lE~n~~~P~~~~~~~~ 196 (321)
T PF08424_consen 118 VSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQ-AGYTERAVALWQALLEFNFFRPESLSSSSF 196 (321)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHH-CCchHHHHHHHHHHHHHHcCCccccccccH
Confidence 3456677777776554322 23356889999999999998 699999999999888776643333333221
Q ss_pred HHHHHHHHHHHhhHhhhhcCCC
Q 024897 221 KDSTLIMQLLRDNLTLWTSDMQ 242 (261)
Q Consensus 221 ~ds~~ilqLLrDNl~lW~~e~~ 242 (261)
. +.++.=-.=|.++.+
T Consensus 197 ~------~~~~~fe~FWeS~vp 212 (321)
T PF08424_consen 197 S------ERLESFEEFWESEVP 212 (321)
T ss_pred H------HHHHHHHHHhCcCCC
Confidence 1 444444578988755
No 32
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=46.73 E-value=87 Score=21.02 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchhHHHhhhHHHHHHHHhCChHHHHHHHHHH
Q 024897 152 ENTLNAYKSAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQA 204 (261)
Q Consensus 152 ~~a~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~a 204 (261)
+.|...|++++.. +|-...+.++++..|+. .|+.++|..+..+.
T Consensus 8 ~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 8 DEAIELLEKALQR--------NPDNPEARLLLAQCYLK-QGQYDEAEELLERL 51 (68)
T ss_dssp HHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCC
T ss_pred HHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence 4577777777643 44445555566677776 69999988776653
No 33
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=46.05 E-value=39 Score=19.80 Aligned_cols=29 Identities=17% Similarity=0.272 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCC
Q 024897 10 NVYMAKLAEQAERYEEMVQYMEKVVASASTGE 41 (261)
Q Consensus 10 li~~Aklaeq~eRy~Dm~~~mk~~i~~~~~~~ 41 (261)
+..++.+..+.++|++.+.+.++.+ +.+|
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al---~~~p 32 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRAL---ELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH---HHST
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHH---HHCc
Confidence 4568888899999999999999998 4454
No 34
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=45.38 E-value=4.4e+02 Score=28.77 Aligned_cols=25 Identities=24% Similarity=0.209 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Q 024897 10 NVYMAKLAEQAERYEEMVQYMEKVV 34 (261)
Q Consensus 10 li~~Aklaeq~eRy~Dm~~~mk~~i 34 (261)
.+.+|.+..+.|+|++.+.+.++++
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~ 536 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKIS 536 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 3445555566677777776666655
No 35
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=45.11 E-value=79 Score=25.78 Aligned_cols=49 Identities=16% Similarity=0.102 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchhHHHhhhHHHHHHHHhCChHHHHHHHHHHHH
Q 024897 152 ENTLNAYKSAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 206 (261)
Q Consensus 152 ~~a~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd 206 (261)
+.|...|+.|+.+. |.++.......|.++.+.. .|+.++|+....+|+.
T Consensus 52 ~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~-~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 52 AEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTS-NGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 46888899998763 2333333455666655554 7999999998888774
No 36
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=44.35 E-value=51 Score=22.58 Aligned_cols=45 Identities=20% Similarity=0.247 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchhHHHhhhHHHHHHHHhCChHHHHHHHHHHH
Q 024897 152 ENTLNAYKSAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 205 (261)
Q Consensus 152 ~~a~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~af 205 (261)
+.|..+++.++.+ +|-...+-++++.+++. +|+.++|.....++.
T Consensus 12 ~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 12 EEALEVLERALEL--------DPDDPELWLQRARCLFQ-LGRYEEALEDLERAL 56 (73)
T ss_pred HHHHHHHHHHHHh--------CcccchhhHHHHHHHHH-hccHHHHHHHHHHHH
Confidence 3455555555542 55556667778888776 799999888776666
No 37
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=44.01 E-value=46 Score=20.31 Aligned_cols=25 Identities=20% Similarity=0.442 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Q 024897 10 NVYMAKLAEQAERYEEMVQYMEKVV 34 (261)
Q Consensus 10 li~~Aklaeq~eRy~Dm~~~mk~~i 34 (261)
+..+|.+..+.|.|+..+++.++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4678999999999999999999855
No 38
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=44.01 E-value=1.3e+02 Score=25.51 Aligned_cols=71 Identities=15% Similarity=0.172 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCchhHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCCCc--hHHHHHH
Q 024897 149 VAAENTLNAYKSAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLGEDS--YKDSTLI 226 (261)
Q Consensus 149 ~~~~~a~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~--y~ds~~i 226 (261)
.--+.|.++|..|.. |.|.||-- ..|.++-+.- +|+.+.|. ++|+.||.--...++.. ..-+...
T Consensus 83 g~~~~AI~aY~~A~~-----L~~ddp~~---~~~ag~c~L~-lG~~~~A~----~aF~~Ai~~~~~~~~~~~l~~~A~~~ 149 (157)
T PRK15363 83 KHWGEAIYAYGRAAQ-----IKIDAPQA---PWAAAECYLA-CDNVCYAI----KALKAVVRICGEVSEHQILRQRAEKM 149 (157)
T ss_pred hhHHHHHHHHHHHHh-----cCCCCchH---HHHHHHHHHH-cCCHHHHH----HHHHHHHHHhccChhHHHHHHHHHHH
Confidence 335678889988875 44555531 3455554443 68887765 57777777654433322 2335666
Q ss_pred HHHHHh
Q 024897 227 MQLLRD 232 (261)
Q Consensus 227 lqLLrD 232 (261)
+..|.|
T Consensus 150 L~~l~~ 155 (157)
T PRK15363 150 LQQLSD 155 (157)
T ss_pred HHHhhc
Confidence 666654
No 39
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=43.83 E-value=4e+02 Score=27.79 Aligned_cols=55 Identities=18% Similarity=0.210 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 024897 10 NVYMAKLAEQAERYEEMVQYMEKVVASASTGEELTVEERNLLSVAYKNVIGARRASWRIVS 70 (261)
Q Consensus 10 li~~Aklaeq~eRy~Dm~~~mk~~i~~~~~~~~Ls~eERnLlSvayKn~i~~~R~s~R~l~ 70 (261)
...+|.+.-..|++++.+..+++++ ...|+-.. ...+..++.. .+....+...+.
T Consensus 86 ~~~la~~l~~~g~~~eA~~~l~~~l---~~~P~~~~--~~~la~~l~~-~g~~~~Al~~l~ 140 (765)
T PRK10049 86 QRGLILTLADAGQYDEALVKAKQLV---SGAPDKAN--LLALAYVYKR-AGRHWDELRAMT 140 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHH--HHHHHHHHHH-CCCHHHHHHHHH
Confidence 3455555555666666666666665 23333322 4455555543 244444444443
No 40
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=43.00 E-value=3.6e+02 Score=27.11 Aligned_cols=61 Identities=18% Similarity=0.287 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCC------CCchhHHHhhhHHHHHHHHhCChHHHHHHHHHHHH
Q 024897 145 DERKVAAENTLNAYKSAQDIANAELAP------THPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 206 (261)
Q Consensus 145 ~~~~~~~~~a~~aY~~A~~~a~~~L~p------t~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd 206 (261)
..+..++..-...|...++... .+++ ..|.-+--++.|-.-+|+.+|+.++|+....+|++
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~-~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ 222 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNG-SFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE 222 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccC-CCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 3455666666666666554332 2332 35777777888888899999999999998887754
No 41
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=41.55 E-value=74 Score=27.33 Aligned_cols=73 Identities=18% Similarity=0.215 Sum_probs=45.6
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 024897 41 EELTVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESRGNQDHVSVIKEYRSKIEAELTEICGGILKLLDQKL 114 (261)
Q Consensus 41 ~~Ls~eERnLlSvayKn~i~~~R~s~R~l~~ieqke~~~~~~~~~~~i~~yr~kie~EL~~~C~eii~lId~~L 114 (261)
|++|.|-|.=|....|...-..|.+.|-+..--.+.- ++.......-++-.++.+++|..+.++.+.-||..+
T Consensus 99 P~lT~E~R~~lvK~~k~~~E~~Kv~iRniR~~~~~~l-Kk~~k~~~iseD~~k~~~~~iqkltd~~i~~id~~~ 171 (179)
T cd00520 99 PPLTEERRKELVKDAKKIAEEAKVAIRNIRRDANDKI-KKLEKEKEISEDEVKKAEEDLQKLTDEYIKKIDELL 171 (179)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999998888888888742111110 000000001234445667777777777777776654
No 42
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=40.99 E-value=43 Score=31.69 Aligned_cols=45 Identities=24% Similarity=0.334 Sum_probs=39.1
Q ss_pred HhCChHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHhhHhhhhc
Q 024897 190 ILNSPDRACNLAKQAFDEAISELDTLGEDSYKDSTLIMQLLRDNLTLWTS 239 (261)
Q Consensus 190 i~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~ilqLLrDNl~lW~~ 239 (261)
-.|.+..|+++.+.++. +|.|+|++++.-+.++-+++||+..=.+
T Consensus 291 e~g~~neAi~l~qr~lt-----ldpL~e~~nk~lm~~la~~gD~is~~kh 335 (361)
T COG3947 291 EAGKPNEAIQLHQRALT-----LDPLSEQDNKGLMASLATLGDEISAIKH 335 (361)
T ss_pred HcCChHHHHHHHHHHhh-----cChhhhHHHHHHHHHHHHhccchhhhhH
Confidence 37999999999998764 7889999999999999999999876544
No 43
>PF03755 YicC_N: YicC-like family, N-terminal region ; InterPro: IPR013527 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures []. This domain is found at the N-terminal region of these proteins.
Probab=40.84 E-value=54 Score=27.39 Aligned_cols=62 Identities=26% Similarity=0.247 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCCchhHHHhhhH-HHHH-HHH--hCChHHHHHHHHHHHHHHHHhhcc
Q 024897 153 NTLNAYKSAQDIANAELAPTHPIRLGLALNF-SVFY-YEI--LNSPDRACNLAKQAFDEAISELDT 214 (261)
Q Consensus 153 ~a~~aY~~A~~~a~~~L~pt~pirLgLaLN~-SVF~-yEi--~~~~~~A~~iAk~afd~Ai~~ld~ 214 (261)
....+|-+++.-....++...|+.++..|.+ .||. .+- ....+..-.....++++|+..+..
T Consensus 82 ~l~~~y~~~l~~l~~~~~~~~~~~~~~ll~~p~v~~~~~~~~~~~~e~~~~~l~~~l~~AL~~l~~ 147 (159)
T PF03755_consen 82 ELAKAYYEALKELAEELGLAGPISLDDLLRLPGVLKVEEEEDEEEEEELWEALLEALEEALDELIA 147 (159)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCHHHHHcCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777776655567888889999999999 5665 221 112233457788999999988754
No 44
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=38.74 E-value=84 Score=21.07 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=34.3
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHH
Q 024897 12 YMAKLAEQAERYEEMVQYMEKVVASASTGEELTVEERNLLSVAYKNVIGARRASWRIV 69 (261)
Q Consensus 12 ~~Aklaeq~eRy~Dm~~~mk~~i~~~~~~~~Ls~eERnLlSvayKn~i~~~R~s~R~l 69 (261)
.+|...-+.|+|++.+..+++++ ..+|. +.+=+.++..++- ..+....|...+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l---~~~P~-~~~a~~~lg~~~~-~~g~~~~A~~~~ 54 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQAL---KQDPD-NPEAWYLLGRILY-QQGRYDEALAYY 54 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHH---CCSTT-HHHHHHHHHHHHH-HTT-HHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHH---HHCCC-CHHHHHHHHHHHH-HcCCHHHHHHHH
Confidence 46788889999999999999999 44433 5555555555554 334444444433
No 45
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=38.44 E-value=1.1e+02 Score=26.23 Aligned_cols=73 Identities=16% Similarity=0.227 Sum_probs=46.2
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 024897 41 EELTVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESRGNQDHVSVIKEYRSKIEAELTEICGGILKLLDQKL 114 (261)
Q Consensus 41 ~~Ls~eERnLlSvayKn~i~~~R~s~R~l~~ieqke~~~~~~~~~~~i~~yr~kie~EL~~~C~eii~lId~~L 114 (261)
|+||.|-|.=|....|...-..|.++|-+..--.+.- +........-++-.++++++|..+.++.+.-||..+
T Consensus 94 P~lT~E~RkelvK~~k~~~E~aKv~iRniRr~~~~~i-Kk~~k~~~iseD~~k~~~~~iQkltd~~i~~id~~~ 166 (176)
T TIGR00496 94 PPLTEERRKELVKHAKKIAEQAKVAVRNVRRDANDKV-KKLEKDKEISEDEERRLQEEIQKLTDEYIKKIDEIL 166 (176)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999998888888888742111100 000000011235556677777777777777777654
No 46
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=37.96 E-value=1.2e+02 Score=22.22 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchhHHHhhhHHHHHHHHhCChHHHHHHHHHHHHH
Q 024897 152 ENTLNAYKSAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 207 (261)
Q Consensus 152 ~~a~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~ 207 (261)
+.|...|+.+.. +.|.||......++.+..++. +|+.++|.....++++.
T Consensus 56 ~~A~~~~~~~~~-----~~p~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 56 ADAAKAFLAVVK-----KYPKSPKAPDALLKLGMSLQE-LGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHHHH-----HCCCCCcccHHHHHHHHHHHH-hCChHHHHHHHHHHHHH
Confidence 457777877764 346676555555566555554 79999999887776655
No 47
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=37.20 E-value=1.2e+02 Score=26.26 Aligned_cols=73 Identities=16% Similarity=0.196 Sum_probs=46.1
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 024897 41 EELTVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESRGNQDHVSVIKEYRSKIEAELTEICGGILKLLDQKL 114 (261)
Q Consensus 41 ~~Ls~eERnLlSvayKn~i~~~R~s~R~l~~ieqke~~~~~~~~~~~i~~yr~kie~EL~~~C~eii~lId~~L 114 (261)
|+||.|-|.=|....|...-.-|.+.|-+..--.+.-.+ .......-++-.++.++|+..+.++.+.-||..+
T Consensus 103 P~lT~E~R~elvK~~k~~~E~aKv~iRniRr~~~~~iKk-~~k~~~iseD~~k~~e~eiQkltd~~i~~id~~~ 175 (185)
T PRK00083 103 PPLTEERRKELVKQVKKEAEEAKVAIRNIRRDANDKLKK-LEKDKEISEDELKRAEDEIQKLTDKYIKKIDELL 175 (185)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999888888888885311111000 0000011234456677777777777777777654
No 48
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=36.82 E-value=4.6e+02 Score=26.46 Aligned_cols=190 Identities=16% Similarity=0.149 Sum_probs=109.6
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHhh-hcCCCCCCHHHHHHHHHH---------HhhhhhhhhHHHHHHHHHhhhhhh
Q 024897 9 ENVYMAKLAEQAERYEEMVQYMEKVVAS-ASTGEELTVEERNLLSVA---------YKNVIGARRASWRIVSSIEQKEES 78 (261)
Q Consensus 9 ~li~~Aklaeq~eRy~Dm~~~mk~~i~~-~~~~~~Ls~eERnLlSva---------yKn~i~~~R~s~R~l~~ieqke~~ 78 (261)
-+.-+|.+.-..|+|++.-.+++.+++- ...-.....+=-..|+.. |-..+.=.+.+.+++ .....
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~---~~~~g- 360 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY---LDAPG- 360 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH---Hhhcc-
Confidence 3556788888889999999999888741 011122223322222211 122222233333333 22111
Q ss_pred cCc--c--hhHHHHHHH-HHHHHHHHHHHHHHHHHHhhhcccCcccCcchHHHHHHhhcchhhhhhhhcCchhHHHHHHH
Q 024897 79 RGN--Q--DHVSVIKEY-RSKIEAELTEICGGILKLLDQKLVPAAAAADSKVFYLKMKGDYHRYLAEFKTGDERKVAAEN 153 (261)
Q Consensus 79 ~~~--~--~~~~~i~~y-r~kie~EL~~~C~eii~lId~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~ 153 (261)
..+ . .+.++-.-| +.-=.+|-..+-..+|++.....= ..+...-.+++.|-.+|+|-. -...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~--~~~~~~~~~l~~la~~~~~~k-----------~~~~ 427 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLG--KKDYGVGKPLNQLAEAYEELK-----------KYEE 427 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc--CcChhhhHHHHHHHHHHHHhc-----------ccch
Confidence 001 0 001111111 112234455556666666544432 123345567777777775411 1245
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCC
Q 024897 154 TLNAYKSAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLGE 217 (261)
Q Consensus 154 a~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~e 217 (261)
|.+.|.+|..+. ....|.||--++..+|.++- |+-+|+.++|++++..+..-=-..+++.+.
T Consensus 428 a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~-Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~ 489 (508)
T KOG1840|consen 428 AEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAAL-YRAQGNYEAAEELEEKVLNAREQRLGTASP 489 (508)
T ss_pred HHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 788999999999 68999999999999999875 567899999999999887655555555544
No 49
>COG4499 Predicted membrane protein [Function unknown]
Probab=36.55 E-value=71 Score=31.17 Aligned_cols=47 Identities=28% Similarity=0.386 Sum_probs=39.8
Q ss_pred HHHhhhHHHHHHHHhCChHHHHHHHHHHH-----HHHHHhhccCCCCchHHH
Q 024897 177 LGLALNFSVFYYEILNSPDRACNLAKQAF-----DEAISELDTLGEDSYKDS 223 (261)
Q Consensus 177 LgLaLN~SVF~yEi~~~~~~A~~iAk~af-----d~Ai~~ld~l~ee~y~ds 223 (261)
|-|+|=|++|+|-+..-.+.||.-|.+|| +..|..++.+|.++.+.+
T Consensus 231 lvl~li~~~Y~~f~~~p~qeai~~a~~aFL~~nY~qVittLe~ydp~klPks 282 (434)
T COG4499 231 LVLLLIYFTYYYFSNQPKQEAIITANTAFLKNNYDQVITTLENYDPEKLPKS 282 (434)
T ss_pred HHHHHHHHHHHHHHcChhHHHHHHHHHHHHhccHHHHhhhcccCChhhCcHH
Confidence 44578899999999999999999999995 789999999887776554
No 50
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=36.09 E-value=1.5e+02 Score=20.73 Aligned_cols=39 Identities=26% Similarity=0.305 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHhhhhhh
Q 024897 9 ENVYMAKLAEQAERYEEMVQYMEKVVASASTGEELTVEERNLLSVAYKNVIGA 61 (261)
Q Consensus 9 ~li~~Aklaeq~eRy~Dm~~~mk~~i~~~~~~~~Ls~eERnLlSvayKn~i~~ 61 (261)
.++..|--+++.|+|++.+++=+.-+ .+|..+.+.-.++
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai--------------~~l~~~~~~~~~~ 45 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAI--------------EYLMQALKSESNP 45 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHH--------------HHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH--------------HHHHHHhccCCCH
Confidence 56778888899999999999988877 4566666665443
No 51
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=35.73 E-value=1.4e+02 Score=24.39 Aligned_cols=49 Identities=20% Similarity=0.303 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchhHHHhhhHHHHHHHHhCChHHHHHHHHHHHH
Q 024897 152 ENTLNAYKSAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 206 (261)
Q Consensus 152 ~~a~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd 206 (261)
+.|...|++|+.+.. .+|-..-...|.++-++. +|+.++|+....+|++
T Consensus 52 ~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 52 AEALENYEEALKLEE-----DPNDRSYILYNMGIIYAS-NGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 467888888887542 223223345666666655 7999999888777765
No 52
>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.
Probab=34.31 E-value=3.7e+02 Score=28.49 Aligned_cols=140 Identities=19% Similarity=0.266 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhCCHHH-HHHHHHHHHhhhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhcCcchhHHHH
Q 024897 10 NVYMAKLAEQAERYEE-MVQYMEKVVASASTGEELTVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESRGNQDHVSVI 88 (261)
Q Consensus 10 li~~Aklaeq~eRy~D-m~~~mk~~i~~~~~~~~Ls~eERnLlSvayKn~i~~~R~s~R~l~~ieqke~~~~~~~~~~~i 88 (261)
.+.-|.+|++++ +++ .-+|+.+... .|..-|+.-|.-++.|..+-..-..-. ..-
T Consensus 595 ~Lq~A~~AD~~~-~e~iaYEFf~QAf~------------------iYEE~IsDSk~Q~~aL~~ii~tL~~~r-----~~~ 650 (762)
T PF03635_consen 595 YLQAAIVADQCG-LEEIAYEFFSQAFT------------------IYEEEISDSKAQFQALTLIIGTLQKTR-----SFS 650 (762)
T ss_dssp HHHHHHHHHHH---TTHHHHHHHHHHH------------------HHHHH--SHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHHhhC-cHHHHHHHHHHHHH------------------HHHhhccchHHHHHHHHHHHHHHHHhc-----CCC
Confidence 456788888888 444 3456655542 566677777777777776655432110 001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCcccCcc-----hHHHHHHhhcchhhhhhhhcCchhHHHHHHHHHHHHHHHHH
Q 024897 89 KEYRSKIEAELTEICGGILKLLDQKLVPAAAAAD-----SKVFYLKMKGDYHRYLAEFKTGDERKVAAENTLNAYKSAQD 163 (261)
Q Consensus 89 ~~yr~kie~EL~~~C~eii~lId~~Lip~~~~~e-----skVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~ 163 (261)
++....+.......| ..|+....... |-.|+..=.. +. +.....--++.++|-|+|+.
T Consensus 651 ~Enyd~L~tk~t~ya--------sKLLKK~DQCRaV~~CSHLfW~~~~~-------~~--~~~~~rd~krVlECLQKaLr 713 (762)
T PF03635_consen 651 EENYDTLITKCTLYA--------SKLLKKPDQCRAVYLCSHLFWSTEIS-------EE--TGSFYRDGKRVLECLQKALR 713 (762)
T ss_dssp HHHHHHHHHHHHHHH--------HC-SSHHHHHHHHHHCHHHHHT-B-T-------TT--TT-B---HHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHH--------HHhcCcHHHHHHHHHHHHHHhCCCCC-------cc--ccccccChHHHHHHHHHHHH
Confidence 223333333333333 23333321111 2233322211 11 11111223678999999999
Q ss_pred HHHhcCCCCCchhHHH-hhhHHHHHHHH
Q 024897 164 IANAELAPTHPIRLGL-ALNFSVFYYEI 190 (261)
Q Consensus 164 ~a~~~L~pt~pirLgL-aLN~SVF~yEi 190 (261)
+|.+.+.|.-.+-|=+ +||..+|||+-
T Consensus 714 iAds~md~~~~~~LfveILn~ylyf~~~ 741 (762)
T PF03635_consen 714 IADSCMDPSQSVQLFVEILNRYLYFFEK 741 (762)
T ss_dssp HHHCSSSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCcchhHHHHHHHHHHHHHhhhc
Confidence 9998887544444433 89999999963
No 53
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=33.73 E-value=61 Score=23.20 Aligned_cols=44 Identities=11% Similarity=0.147 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCCCCCchhHHHhhhHHHHHHHHhCChHHHHHHHHH
Q 024897 157 AYKSAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQ 203 (261)
Q Consensus 157 aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~ 203 (261)
-|.+|+++.+. .+.+|..+....-++--++ -+|+.++|+..-++
T Consensus 40 ~y~~A~~~~~~--~~~~~~~~~~~~l~a~~~~-~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 40 KYEEAIELLQK--LKLDPSNPDIHYLLARCLL-KLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHC--HTHHHCHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHH--hCCCCCCHHHHHHHHHHHH-HhCCHHHHHHHHhc
Confidence 34555555543 2233333444444433333 37888888876554
No 54
>KOG1107 consensus Membrane coat complex Retromer, subunit VPS35 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.85 E-value=1.1e+02 Score=32.03 Aligned_cols=42 Identities=26% Similarity=0.372 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCchhHHH-hhhHHHHHHHHhC
Q 024897 151 AENTLNAYKSAQDIANAELAPTHPIRLGL-ALNFSVFYYEILN 192 (261)
Q Consensus 151 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL-aLN~SVF~yEi~~ 192 (261)
-++..+|+++|+.+|.+.+.|+-++-|=+ +||--.||||--+
T Consensus 656 GkRVleCLkkAlkIA~qcmd~~~~vqLFIEILnrYiYfyek~n 698 (760)
T KOG1107|consen 656 GKRVLECLKKALKIAQQCMDNLRQVQLFIEILNRYIYFYEKGN 698 (760)
T ss_pred hHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhcCC
Confidence 35788999999999999999999988744 8999899998533
No 55
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=31.87 E-value=71 Score=20.48 Aligned_cols=37 Identities=27% Similarity=0.412 Sum_probs=27.0
Q ss_pred chhhhhhhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024897 133 DYHRYLAEFKTGDERKVAAENTLNAYKSAQDIANAELAPT 172 (261)
Q Consensus 133 DyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt 172 (261)
|.|--++|+.-..++- ++|.+=|++|+++-++.+||.
T Consensus 2 dv~~~Lgeisle~e~f---~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 2 DVYDLLGEISLENENF---EQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred cHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHhcCCC
Confidence 4555577776655543 578889999999988878773
No 56
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=31.87 E-value=1.6e+02 Score=19.64 Aligned_cols=46 Identities=15% Similarity=0.221 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchhHHHhhhHHHHHHHHhCChHHHHHHHHHHHH
Q 024897 152 ENTLNAYKSAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 206 (261)
Q Consensus 152 ~~a~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd 206 (261)
+.|...|++++. .+|-.-..-+..+..++. .|++++|+..-+++++
T Consensus 14 ~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 14 DEAIAAFEQALK--------QDPDNPEAWYLLGRILYQ-QGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 456666666552 345555666666777774 7999999976666553
No 57
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=31.59 E-value=2.3e+02 Score=22.62 Aligned_cols=50 Identities=22% Similarity=0.244 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchhHHHhhhHHHHHHHHhCChHHHHHHHHHHHHH
Q 024897 152 ENTLNAYKSAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 207 (261)
Q Consensus 152 ~~a~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~ 207 (261)
+.|...|++|+.. .|+ .|.|-+..++.+--+- .+|++++|+.+-++++.+
T Consensus 18 ~~Ai~~Y~~Al~~---gL~--~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 18 EEAIPLYRRALAA---GLS--GADRRRALIQLASTLR-NLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHHHHHHHHc---CCC--chHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Confidence 5789999999752 344 5555556666655444 589999999998887654
No 58
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=30.86 E-value=84 Score=16.17 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Q 024897 10 NVYMAKLAEQAERYEEMVQYMEKVV 34 (261)
Q Consensus 10 li~~Aklaeq~eRy~Dm~~~mk~~i 34 (261)
+..+|.+..+.++|++.+.++.+.+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4567888888999999999998887
No 59
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=30.07 E-value=5.7e+02 Score=25.50 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHhCCHHHHHHHHHHHH
Q 024897 8 EENVYMAKLAEQAERYEEMVQYMEKVV 34 (261)
Q Consensus 8 ~~li~~Aklaeq~eRy~Dm~~~mk~~i 34 (261)
+-...++.+..+.|+|++.+.++++++
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~ 628 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLL 628 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344455666666666666666666666
No 60
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=29.42 E-value=3e+02 Score=22.05 Aligned_cols=56 Identities=13% Similarity=0.070 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHH
Q 024897 9 ENVYMAKLAEQAERYEEMVQYMEKVVASASTGEELTVEERNLLSVAYKNVIGARRASWRIV 69 (261)
Q Consensus 9 ~li~~Aklaeq~eRy~Dm~~~mk~~i~~~~~~~~Ls~eERnLlSvayKn~i~~~R~s~R~l 69 (261)
-+..++...-..|+|+..+..+.+++. .+|. +..-...++..|-.. +....+...+
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~---~~p~-~~~~~~~la~~~~~~-~~~~~A~~~~ 88 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALE---HDPD-DYLAYLALALYYQQL-GELEKAEDSF 88 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH---hCcc-cHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 456778888888999999999999883 3333 344445555555433 3334444444
No 61
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=28.72 E-value=1.6e+02 Score=27.65 Aligned_cols=46 Identities=20% Similarity=0.136 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHh--cCCCCCchhHHHhhhHHHHHHHHhCChHHHHHHHHHHH
Q 024897 156 NAYKSAQDIANA--ELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 205 (261)
Q Consensus 156 ~aY~~A~~~a~~--~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~af 205 (261)
.-|++|+..+.. .+.|.+| ...++.++.|+. +|+.+.|+...++|+
T Consensus 50 g~~~eAl~~~~~Al~l~P~~~---~a~~~lg~~~~~-lg~~~eA~~~~~~al 97 (356)
T PLN03088 50 GNFTEAVADANKAIELDPSLA---KAYLRKGTACMK-LEEYQTAKAALEKGA 97 (356)
T ss_pred CCHHHHHHHHHHHHHhCcCCH---HHHHHHHHHHHH-hCCHHHHHHHHHHHH
Confidence 445556655543 3445444 233444544444 677777777554444
No 62
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=27.61 E-value=1.3e+02 Score=32.64 Aligned_cols=52 Identities=19% Similarity=0.314 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHh--cCCCCCchhHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHh
Q 024897 156 NAYKSAQDIANA--ELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISE 211 (261)
Q Consensus 156 ~aY~~A~~~a~~--~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ 211 (261)
++|..|+.+-.. ...|.||.-|...-||=+| -++.+.++.+|-.||..+...
T Consensus 250 ~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyf----K~dy~~v~~la~~ai~~t~~~ 303 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKENNENPVALNHLANHFYF----KKDYERVWHLAEHAIKNTENK 303 (1018)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhh----cccHHHHHHHHHHHHHhhhhh
Confidence 577777766644 6889999988888777444 699999999999999888443
No 63
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=26.83 E-value=2.4e+02 Score=20.07 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 024897 9 ENVYMAKLAEQAERYEEMVQYMEKVVA 35 (261)
Q Consensus 9 ~li~~Aklaeq~eRy~Dm~~~mk~~i~ 35 (261)
.++-.|--+++.|+|++.+.+....++
T Consensus 8 ~l~~~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 8 ELIKQAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666777888999999999988885
No 64
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=26.54 E-value=4.9e+02 Score=23.65 Aligned_cols=23 Identities=4% Similarity=0.212 Sum_probs=10.7
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Q 024897 12 YMAKLAEQAERYEEMVQYMEKVV 34 (261)
Q Consensus 12 ~~Aklaeq~eRy~Dm~~~mk~~i 34 (261)
.++.+.-+.|+|++.+.....++
T Consensus 74 ~la~~~~~~g~~~~A~~~~~~~l 96 (389)
T PRK11788 74 ALGNLFRRRGEVDRAIRIHQNLL 96 (389)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHh
Confidence 34444444444444444444444
No 65
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.64 E-value=3.9e+02 Score=22.76 Aligned_cols=34 Identities=12% Similarity=0.295 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHhhhhhh
Q 024897 25 EMVQYMEKVVASASTGEELTVEERNLLSVAYKNVIGA 61 (261)
Q Consensus 25 Dm~~~mk~~i~~~~~~~~Ls~eERnLlSvayKn~i~~ 61 (261)
..++..++++ +...+||.+|++.|..+...++-.
T Consensus 83 ~~L~aa~el~---ee~eeLs~deke~~~~sl~dL~~d 116 (158)
T PF10083_consen 83 NALEAANELI---EEDEELSPDEKEQFKESLPDLTKD 116 (158)
T ss_pred HHHHHHHHHH---HHhhcCCHHHHHHHHhhhHHHhhc
Confidence 4466667777 467899999999999999988754
No 66
>PF07309 FlaF: Flagellar protein FlaF; InterPro: IPR010845 This family consists of several bacterial FlaF flagellar proteins. FlaF and FlaG are trans-acting, regulatory factors that modulate flagellin synthesis during flagellum biogenesis [].
Probab=24.68 E-value=54 Score=26.14 Aligned_cols=50 Identities=22% Similarity=0.235 Sum_probs=29.9
Q ss_pred hCChHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHhhHhhhhcCC
Q 024897 191 LNSPDRACNLAKQAFDEAISELDTLGEDSYKDSTLIMQLLRDNLTLWTSDM 241 (261)
Q Consensus 191 ~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~ilqLLrDNl~lW~~e~ 241 (261)
.+.+..+.++=..+|..+...|....+..-. +..-++-|.+|..+|+.-.
T Consensus 10 ~~~~~~~Re~E~~~l~~a~~~L~~A~~~~~~-~~~~~~AL~~N~rLW~~~~ 59 (113)
T PF07309_consen 10 AQSTRSPREIEARALARAARRLERAREAGPR-SREALEALHFNRRLWTIFA 59 (113)
T ss_pred HHhcCChHHHHHHHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHH
Confidence 3344444555556677777776655422222 2222399999999999643
No 67
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=24.65 E-value=93 Score=20.89 Aligned_cols=53 Identities=19% Similarity=0.387 Sum_probs=32.7
Q ss_pred HhCCHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhh
Q 024897 19 QAERYEEMVQYMEKVVASASTGEELTVEERNLLSVAYKNVIGARRASWRIVSSIEQKE 76 (261)
Q Consensus 19 q~eRy~Dm~~~mk~~i~~~~~~~~Ls~eERnLlSvayKn~i~~~R~s~R~l~~ieqke 76 (261)
+.|+|++.+..+++++ ..+|. +.+=+-.+..+|-.. |..-.|.+++..+....
T Consensus 3 ~~~~~~~A~~~~~~~l---~~~p~-~~~~~~~la~~~~~~-g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKAL---QRNPD-NPEARLLLAQCYLKQ-GQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHH---HHTTT-SHHHHHHHHHHHHHT-T-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHH---HHCCC-CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHC
Confidence 4577777777777777 33444 666666666666554 66666666666655543
No 68
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=24.44 E-value=2.1e+02 Score=26.96 Aligned_cols=43 Identities=26% Similarity=0.332 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCchhHHHhhhHHHHHHHHhCChHHHHHHHHHH
Q 024897 153 NTLNAYKSAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQA 204 (261)
Q Consensus 153 ~a~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~a 204 (261)
.|.+.|.+|+ .|.|+|||+.. |-+-=|- -+|..+.|++-|+.|
T Consensus 99 eAv~kY~~AI-----~l~P~nAVyyc---NRAAAy~-~Lg~~~~AVkDce~A 141 (304)
T KOG0553|consen 99 EAVDKYTEAI-----ELDPTNAVYYC---NRAAAYS-KLGEYEDAVKDCESA 141 (304)
T ss_pred HHHHHHHHHH-----hcCCCcchHHH---HHHHHHH-HhcchHHHHHHHHHH
Confidence 4666666665 36777776532 2222111 245555555555544
No 69
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=24.29 E-value=2.3e+02 Score=18.98 Aligned_cols=45 Identities=24% Similarity=0.361 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHhh
Q 024897 9 ENVYMAKLAEQAERYEEMVQYMEKVVASASTGEELTVEERNLLSVAYKN 57 (261)
Q Consensus 9 ~li~~Aklaeq~eRy~Dm~~~mk~~i~~~~~~~~Ls~eERnLlSvayKn 57 (261)
.+..+|.++-+.|+|++.+.+.++.+ ..+|. +..=..-++.+|..
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai---~~~p~-~~~~~~~~g~~~~~ 49 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAI---ELDPN-NAEAYYNLGLAYMK 49 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHH---HHSTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCC-CHHHHHHHHHHHHH
Confidence 45678899999999999999999999 34444 23333344444433
No 70
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=24.00 E-value=2.8e+02 Score=25.46 Aligned_cols=69 Identities=29% Similarity=0.424 Sum_probs=42.1
Q ss_pred HHHHHHHHHh--cCCCCCc------hhHHHhhhHHHHHHHHhCChH---HHHHHHHHHHHHHHHhhccCCCCch-HHHHH
Q 024897 158 YKSAQDIANA--ELAPTHP------IRLGLALNFSVFYYEILNSPD---RACNLAKQAFDEAISELDTLGEDSY-KDSTL 225 (261)
Q Consensus 158 Y~~A~~~a~~--~L~pt~p------irLgLaLN~SVF~yEi~~~~~---~A~~iAk~afd~Ai~~ld~l~ee~y-~ds~~ 225 (261)
|..|...+.. .+-|+|| --.||+ +|.-..++. .+..-|..+|++.|. ..+...| .|+..
T Consensus 87 y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs------~~~~i~~~~rDq~~~~~A~~~f~~~i~---ryPnS~Ya~dA~~ 157 (254)
T COG4105 87 YDLALAYIDRFIRLYPTHPNADYAYYLKGLS------YFFQIDDVTRDQSAARAAFAAFKELVQ---RYPNSRYAPDAKA 157 (254)
T ss_pred HHHHHHHHHHHHHhCCCCCChhHHHHHHHHH------HhccCCccccCHHHHHHHHHHHHHHHH---HCCCCcchhhHHH
Confidence 4455555544 6889999 234555 333334443 455555555555555 4566666 78999
Q ss_pred HHHHHHhhHh
Q 024897 226 IMQLLRDNLT 235 (261)
Q Consensus 226 ilqLLrDNl~ 235 (261)
-|..++|-|.
T Consensus 158 ~i~~~~d~LA 167 (254)
T COG4105 158 RIVKLNDALA 167 (254)
T ss_pred HHHHHHHHHH
Confidence 9999998765
No 71
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=23.83 E-value=2.7e+02 Score=21.12 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchhHHHhhhHHHHHHHHhCChHHHHHHHHHHHHH
Q 024897 152 ENTLNAYKSAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 207 (261)
Q Consensus 152 ~~a~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~ 207 (261)
..|...|++++.+ .|++ ....++.+..++ ..|+.++|+..-+.++.-
T Consensus 68 ~~A~~~~~~~~~~-----~p~~---~~~~~~la~~~~-~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 68 EEAIDAYALAAAL-----DPDD---PRPYFHAAECLL-ALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHHHhc-----CCCC---hHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence 4577777777653 3444 334466666555 579999999977766553
No 72
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=23.52 E-value=3.1e+02 Score=20.31 Aligned_cols=26 Identities=19% Similarity=0.196 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHH
Q 024897 9 ENVYMAKLAEQAERYEEMVQYMEKVV 34 (261)
Q Consensus 9 ~li~~Aklaeq~eRy~Dm~~~mk~~i 34 (261)
.++.+|--+++.|||.+.+.+-+.-|
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~Y~~aI 33 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITNYKKAI 33 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 45667777888899999998888777
No 73
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=23.36 E-value=1.1e+02 Score=31.51 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCchhHHHhhhHHHHHHHHhCChHHHHHHHHHHH
Q 024897 151 AENTLNAYKSAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 205 (261)
Q Consensus 151 ~~~a~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~af 205 (261)
-+.|+-.|++|++ +||.-.-+.--.+.+++. +|..++|+++-.+|+
T Consensus 505 ~e~Ae~~fqkA~~--------INP~nsvi~~~~g~~~~~-~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 505 LEFAEFHFQKAVE--------INPSNSVILCHIGRIQHQ-LKRKDKALQLYEKAI 550 (638)
T ss_pred hhHHHHHHHhhhc--------CCccchhHHhhhhHHHHH-hhhhhHHHHHHHHHH
Confidence 3455556666553 456556666666677665 799999999988884
No 74
>PRK15331 chaperone protein SicA; Provisional
Probab=23.06 E-value=4.7e+02 Score=22.40 Aligned_cols=70 Identities=11% Similarity=0.111 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCchhHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHH
Q 024897 151 AENTLNAYKSAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLGEDSYKDSTLIMQLL 230 (261)
Q Consensus 151 ~~~a~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~ilqLL 230 (261)
=++|.++|--|.-+.. =.|.-|.+.|. .|=.+|++.+|.. +|.-|+..-. ..+-..-+...+..|
T Consensus 87 y~~Ai~~Y~~A~~l~~--~dp~p~f~agq-------C~l~l~~~~~A~~----~f~~a~~~~~--~~~l~~~A~~~L~~l 151 (165)
T PRK15331 87 FQKACDLYAVAFTLLK--NDYRPVFFTGQ-------CQLLMRKAAKARQ----CFELVNERTE--DESLRAKALVYLEAL 151 (165)
T ss_pred HHHHHHHHHHHHHccc--CCCCccchHHH-------HHHHhCCHHHHHH----HHHHHHhCcc--hHHHHHHHHHHHHHH
Confidence 3456666666665543 23333444443 3345899888876 7777777311 111123366666666
Q ss_pred HhhHh
Q 024897 231 RDNLT 235 (261)
Q Consensus 231 rDNl~ 235 (261)
..|.+
T Consensus 152 ~~~~~ 156 (165)
T PRK15331 152 KTAET 156 (165)
T ss_pred Hcccc
Confidence 66543
No 75
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=22.69 E-value=5.4e+02 Score=24.90 Aligned_cols=77 Identities=18% Similarity=0.307 Sum_probs=50.5
Q ss_pred cchhhhhhhhcC---chh----HHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHhhhHHHHHHHHhCChHHHHHHHHHH
Q 024897 132 GDYHRYLAEFKT---GDE----RKVAAENTLNAYKSAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQA 204 (261)
Q Consensus 132 gDyyRYlaE~~~---~~~----~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~a 204 (261)
++||.|+||-.. +.+ .++.-+.=.+-..++.+-|..++.- +-+| ...+|-+-||-.| ||.+.|.+..+.+
T Consensus 54 ap~Ye~lce~~~i~~D~~~l~~m~~~neeki~eld~~iedaeenlGE-~ev~-ea~~~kaeYycqi-gDkena~~~~~~t 130 (393)
T KOG0687|consen 54 APLYEYLCESLVIKLDQDLLNSMKKANEEKIKELDEKIEDAEENLGE-SEVR-EAMLRKAEYYCQI-GDKENALEALRKT 130 (393)
T ss_pred chHHHHHHhhcceeccHHHHHHHHHhhHHHHHHHHHHHHHHHHhcch-HHHH-HHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence 788899988432 111 1122222334456666667666553 3444 3357777777775 9999999999999
Q ss_pred HHHHHHh
Q 024897 205 FDEAISE 211 (261)
Q Consensus 205 fd~Ai~~ 211 (261)
++++++-
T Consensus 131 ~~ktvs~ 137 (393)
T KOG0687|consen 131 YEKTVSL 137 (393)
T ss_pred HHHHhhc
Confidence 9999884
No 76
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=22.22 E-value=1.1e+02 Score=28.02 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchhHHHhhhHHHHHHHHhCChHHHHHHHHHHH
Q 024897 152 ENTLNAYKSAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 205 (261)
Q Consensus 152 ~~a~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~af 205 (261)
+.|.+.|++|+.++- -.=-+--||.-|++.- |.+++|...-.+|.
T Consensus 86 ~~A~e~YrkAlsl~p--------~~GdVLNNYG~FLC~q-g~~~eA~q~F~~Al 130 (250)
T COG3063 86 DLADESYRKALSLAP--------NNGDVLNNYGAFLCAQ-GRPEEAMQQFERAL 130 (250)
T ss_pred hhHHHHHHHHHhcCC--------CccchhhhhhHHHHhC-CChHHHHHHHHHHH
Confidence 578999999986532 2223345899999984 68888876544443
No 77
>PHA02103 hypothetical protein
Probab=22.07 E-value=32 Score=27.56 Aligned_cols=14 Identities=43% Similarity=0.653 Sum_probs=11.2
Q ss_pred hcchhhhhhhhcCc
Q 024897 131 KGDYHRYLAEFKTG 144 (261)
Q Consensus 131 kgDyyRYlaE~~~~ 144 (261)
.-|||||.+|-..+
T Consensus 78 ipdyyryf~ee~e~ 91 (135)
T PHA02103 78 IPDYYRYFGEEAEG 91 (135)
T ss_pred ChHHHHHhcccchh
Confidence 46999999986655
No 78
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=21.60 E-value=3.4e+02 Score=22.39 Aligned_cols=49 Identities=18% Similarity=0.333 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCcccCcchHHHHHHhhcchhhhhhhhcCch
Q 024897 83 DHVSVIKEYRSKIEAELTEICGGILKLLDQKLVPAAAAADSKVFYLKMKGDYHRYLAEFKTGD 145 (261)
Q Consensus 83 ~~~~~i~~yr~kie~EL~~~C~eii~lId~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~ 145 (261)
..++.+..+|..++..|....-.+ +-|+|.|+ |..----.|++|+....
T Consensus 58 ~llkqLEkeK~~Le~qlk~~e~rL-------------eQEsKAyh-k~ndeRr~ylaEi~~~s 106 (129)
T PF15372_consen 58 QLLKQLEKEKRSLENQLKDYEWRL-------------EQESKAYH-KANDERRQYLAEISQTS 106 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHH-HHhHHHHHHHHHHHhhh
Confidence 355666666666666666544332 23788887 77666778899886543
No 79
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=21.08 E-value=9.4e+02 Score=25.27 Aligned_cols=164 Identities=17% Similarity=0.203 Sum_probs=88.6
Q ss_pred CCHHHHHHHHHHHhhhhhh-hhHHHHHHHHHhhhhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCcccCc
Q 024897 43 LTVEERNLLSVAYKNVIGA-RRASWRIVSSIEQKEESRGNQDHVSVIKEYRSKIEAELTEICGGILKLLDQKLVPAAAAA 121 (261)
Q Consensus 43 Ls~eERnLlSvayKn~i~~-~R~s~R~l~~ieqke~~~~~~~~~~~i~~yr~kie~EL~~~C~eii~lId~~Lip~~~~~ 121 (261)
|++.|--||-.+.|..=+. ++++++.+.+|-.+....|.+--.+-+.-+.--=.+|-...|.-.+. .+.
T Consensus 3 l~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr----------~d~ 72 (700)
T KOG1156|consen 3 LSPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR----------NDL 72 (700)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhc----------cCc
Confidence 7889999999999988665 79999999988877655553322222211111112223333332222 112
Q ss_pred chHHHHHHhhcchhhhhhhhcCchhHHHHHHHHHHHHHHHHHHHHhcC------------------------------CC
Q 024897 122 DSKVFYLKMKGDYHRYLAEFKTGDERKVAAENTLNAYKSAQDIANAEL------------------------------AP 171 (261)
Q Consensus 122 eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L------------------------------~p 171 (261)
.| -++|..-|=++|= +++ -..|..||+.|+.+...++ |.
T Consensus 73 ~S-~vCwHv~gl~~R~--------dK~--Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~ 141 (700)
T KOG1156|consen 73 KS-HVCWHVLGLLQRS--------DKK--YDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS 141 (700)
T ss_pred cc-chhHHHHHHHHhh--------hhh--HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Confidence 22 3566777777762 111 1356777777765432221 12
Q ss_pred CCchhHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHhhHhhhh
Q 024897 172 THPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLGEDSYKDSTLIMQLLRDNLTLWT 238 (261)
Q Consensus 172 t~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~ilqLLrDNl~lW~ 238 (261)
.|.-++|+|+. ++ ..|+...|..|..+-..... ..++-+.|.-+.++| ..|..+-.
T Consensus 142 ~ra~w~~~Avs----~~-L~g~y~~A~~il~ef~~t~~---~~~s~~~~e~se~~L---y~n~i~~E 197 (700)
T KOG1156|consen 142 QRASWIGFAVA----QH-LLGEYKMALEILEEFEKTQN---TSPSKEDYEHSELLL---YQNQILIE 197 (700)
T ss_pred hHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHhhc---cCCCHHHHHHHHHHH---HHHHHHHH
Confidence 22233333332 33 35888888888766444443 345666666666554 44444433
No 80
>PF14490 HHH_4: Helix-hairpin-helix containing domain; PDB: 3GPL_A 3E1S_A 3GP8_A.
Probab=20.13 E-value=1.6e+02 Score=22.20 Aligned_cols=48 Identities=21% Similarity=0.301 Sum_probs=30.9
Q ss_pred HHhhcchhhhhhhhcCchhHHHHHHHHHHHHHHHHHHHHh-cCCCCCchhHHHhhhHHHHH
Q 024897 128 LKMKGDYHRYLAEFKTGDERKVAAENTLNAYKSAQDIANA-ELAPTHPIRLGLALNFSVFY 187 (261)
Q Consensus 128 ~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~-~L~pt~pirLgLaLN~SVF~ 187 (261)
.+++.|-|+-+.++..- .|+.|-.+|.+ .+++.||-|+.-++-|.+..
T Consensus 38 ~~l~~nPY~L~~~i~gi------------~F~~aD~iA~~~g~~~~d~~Ri~A~i~~~L~~ 86 (94)
T PF14490_consen 38 EILKENPYRLIEDIDGI------------GFKTADKIALKLGIEPDDPRRIRAAILYVLRE 86 (94)
T ss_dssp HHHHH-STCCCB-SSSS------------BHHHHHHHHHTTT--TT-HHHHHHHHHHHHHH
T ss_pred HHHHHChHHHHHHccCC------------CHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 57888888877666332 35555566654 79999999999999987665
No 81
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=20.13 E-value=4.8e+02 Score=21.20 Aligned_cols=13 Identities=23% Similarity=0.557 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHH
Q 024897 152 ENTLNAYKSAQDI 164 (261)
Q Consensus 152 ~~a~~aY~~A~~~ 164 (261)
+.|..+|++|+.+
T Consensus 89 ~~A~~~~~~al~~ 101 (172)
T PRK02603 89 DKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHHHh
Confidence 5678888888864
Done!