Query 024898
Match_columns 261
No_of_seqs 150 out of 1502
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 08:18:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024898.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024898hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02663 Peptidase_C19G A subfa 100.0 1.2E-53 2.7E-58 360.8 25.6 234 1-252 64-300 (300)
2 KOG1865 Ubiquitin carboxyl-ter 100.0 6.8E-53 1.5E-57 361.4 13.7 214 2-254 193-410 (545)
3 cd02668 Peptidase_C19L A subfa 100.0 1.6E-50 3.4E-55 345.4 23.6 224 1-252 87-324 (324)
4 cd02664 Peptidase_C19H A subfa 100.0 1.9E-50 4.2E-55 344.8 20.8 204 1-252 80-327 (327)
5 cd02671 Peptidase_C19O A subfa 100.0 9.3E-49 2E-53 333.3 22.3 205 1-252 104-332 (332)
6 cd02659 peptidase_C19C A subfa 100.0 2.2E-48 4.7E-53 334.0 24.2 224 1-256 85-334 (334)
7 cd02657 Peptidase_C19A A subfa 100.0 1.7E-48 3.8E-53 330.6 21.8 211 1-252 89-305 (305)
8 cd02660 Peptidase_C19D A subfa 100.0 3.1E-48 6.6E-53 332.3 22.2 214 1-252 87-328 (328)
9 cd02667 Peptidase_C19K A subfa 100.0 2.4E-48 5.3E-53 325.2 19.3 195 1-252 50-279 (279)
10 cd02661 Peptidase_C19E A subfa 100.0 7.6E-47 1.6E-51 320.3 21.3 216 1-252 85-304 (304)
11 cd02674 Peptidase_C19R A subfa 100.0 7.1E-46 1.5E-50 302.4 18.1 197 1-252 21-230 (230)
12 cd02665 Peptidase_C19I A subfa 100.0 1.1E-45 2.3E-50 295.9 18.4 205 1-252 21-228 (228)
13 cd02658 Peptidase_C19B A subfa 100.0 1.7E-45 3.7E-50 313.0 19.8 195 1-252 99-311 (311)
14 cd02662 Peptidase_C19F A subfa 100.0 5.3E-45 1.1E-49 298.4 21.2 180 1-252 33-240 (240)
15 COG5533 UBP5 Ubiquitin C-termi 100.0 5.4E-46 1.2E-50 296.9 9.6 240 1-254 161-414 (415)
16 cd02673 Peptidase_C19Q A subfa 100.0 2E-44 4.2E-49 293.9 18.5 209 1-252 32-245 (245)
17 cd02669 Peptidase_C19M A subfa 100.0 2.3E-43 4.9E-48 311.3 19.5 206 1-252 206-440 (440)
18 KOG1866 Ubiquitin carboxyl-ter 100.0 1.4E-45 3.1E-50 322.6 -0.7 225 2-259 182-439 (944)
19 COG5560 UBP12 Ubiquitin C-term 100.0 1.8E-43 3.9E-48 305.3 4.2 240 1-255 354-823 (823)
20 cd02257 Peptidase_C19 Peptidas 100.0 5E-40 1.1E-44 269.8 20.8 217 2-252 22-255 (255)
21 KOG4598 Putative ubiquitin-spe 100.0 8.7E-42 1.9E-46 297.3 2.4 227 2-260 143-447 (1203)
22 KOG1868 Ubiquitin C-terminal h 100.0 4.7E-40 1E-44 294.1 6.2 243 1-258 390-650 (653)
23 KOG0944 Ubiquitin-specific pro 100.0 1.4E-37 3E-42 270.6 10.4 201 2-255 404-763 (763)
24 KOG1867 Ubiquitin-specific pro 100.0 7.9E-37 1.7E-41 268.6 10.8 223 2-258 248-488 (492)
25 COG5077 Ubiquitin carboxyl-ter 100.0 7.9E-38 1.7E-42 274.9 3.7 223 1-256 272-513 (1089)
26 KOG1864 Ubiquitin-specific pro 100.0 3.7E-36 8.1E-41 268.3 12.8 237 1-237 321-564 (587)
27 cd02670 Peptidase_C19N A subfa 100.0 2.9E-34 6.3E-39 231.8 12.3 172 2-252 23-241 (241)
28 PF00443 UCH: Ubiquitin carbox 100.0 7E-33 1.5E-37 229.8 19.1 169 1-251 92-269 (269)
29 COG5207 UBP14 Isopeptidase T [ 100.0 1.8E-33 3.9E-38 238.3 11.4 202 2-253 394-748 (749)
30 cd02666 Peptidase_C19J A subfa 100.0 2.4E-33 5.2E-38 238.6 10.4 201 1-252 97-343 (343)
31 KOG1870 Ubiquitin C-terminal h 100.0 9.6E-34 2.1E-38 265.3 6.2 143 98-255 696-842 (842)
32 cd02672 Peptidase_C19P A subfa 100.0 6.6E-32 1.4E-36 223.1 16.4 157 75-252 89-268 (268)
33 KOG1863 Ubiquitin carboxyl-ter 100.0 2.5E-30 5.5E-35 247.8 8.0 225 1-258 252-489 (1093)
34 KOG1873 Ubiquitin-specific pro 100.0 1.1E-30 2.5E-35 229.8 1.4 143 98-254 678-877 (877)
35 PF13423 UCH_1: Ubiquitin carb 100.0 2.9E-28 6.2E-33 205.6 15.0 197 2-221 82-295 (295)
36 KOG1871 Ubiquitin-specific pro 99.9 7.3E-27 1.6E-31 192.9 9.8 240 2-255 144-420 (420)
37 KOG1872 Ubiquitin-specific pro 99.9 2.6E-27 5.7E-32 200.3 0.8 218 1-255 196-470 (473)
38 KOG2026 Spindle pole body prot 99.8 5.8E-19 1.3E-23 145.9 7.5 196 2-254 219-441 (442)
39 KOG1275 PAB-dependent poly(A) 99.7 6.5E-17 1.4E-21 146.1 7.4 187 55-251 632-860 (1118)
40 KOG1887 Ubiquitin carboxyl-ter 98.5 1.8E-09 3.8E-14 98.2 -6.9 223 4-254 551-790 (806)
41 PF15499 Peptidase_C98: Ubiqui 98.3 3.7E-07 8.1E-12 72.8 3.1 131 56-221 119-253 (275)
42 PF05408 Peptidase_C28: Foot-a 91.6 0.26 5.7E-06 37.9 3.7 29 199-227 137-165 (193)
43 PF14353 CpXC: CpXC protein 91.1 0.36 7.9E-06 35.3 4.0 50 72-131 2-51 (128)
44 PF03292 Pox_P4B: Poxvirus P4B 79.4 3.5 7.6E-05 37.8 4.7 78 141-225 479-574 (666)
45 PF01473 CW_binding_1: Putativ 78.6 2.5 5.5E-05 19.5 2.1 15 205-219 2-16 (19)
46 COG3478 Predicted nucleic-acid 77.5 2.1 4.6E-05 26.8 2.0 35 118-152 4-40 (68)
47 PF02099 Josephin: Josephin; 72.5 5.4 0.00012 30.3 3.6 41 186-231 98-140 (157)
48 PF03367 zf-ZPR1: ZPR1 zinc-fi 72.4 5.1 0.00011 30.6 3.4 99 72-190 2-103 (161)
49 PF14205 Cys_rich_KTR: Cystein 67.0 9.7 0.00021 23.1 3.1 11 119-129 29-39 (55)
50 TIGR00310 ZPR1_znf ZPR1 zinc f 64.7 28 0.0006 27.5 6.2 86 72-177 1-88 (192)
51 PF09855 DUF2082: Nucleic-acid 56.9 11 0.00024 23.9 2.2 33 119-151 1-35 (64)
52 smart00709 Zpr1 Duplicated dom 56.3 43 0.00094 25.5 5.8 83 73-175 2-87 (160)
53 smart00460 TGc Transglutaminas 50.6 24 0.00053 21.8 3.2 21 198-218 46-66 (68)
54 cd01269 PLX Pollux (PLX) Phosp 48.3 67 0.0014 23.3 5.3 63 143-209 45-107 (129)
55 cd02418 Peptidase_C39B A sub-f 47.5 1E+02 0.0022 22.0 7.5 45 198-253 87-133 (136)
56 TIGR00373 conserved hypothetic 47.3 73 0.0016 24.2 5.8 29 71-127 109-137 (158)
57 PF08715 Viral_protease: Papai 46.1 40 0.00086 28.9 4.6 21 189-211 263-283 (320)
58 KOG2935 Ataxin 3/Josephin [Gen 45.2 2.8 6E-05 34.0 -2.3 59 188-257 104-164 (315)
59 PF03412 Peptidase_C39: Peptid 40.1 1.3E+02 0.0029 21.2 6.8 45 199-254 83-129 (131)
60 KOG1873 Ubiquitin-specific pro 39.4 6.2 0.00013 37.3 -1.3 94 1-96 305-401 (877)
61 PRK06266 transcription initiat 37.0 1.3E+02 0.0029 23.3 5.9 9 119-127 137-145 (178)
62 PF07754 DUF1610: Domain of un 36.0 19 0.00042 17.9 0.7 9 118-126 16-24 (24)
63 cd02420 Peptidase_C39D A sub-f 35.2 1.6E+02 0.0034 20.6 6.1 33 200-232 83-117 (125)
64 PRK03824 hypA hydrogenase nick 34.8 27 0.00059 25.8 1.7 50 67-127 66-116 (135)
65 PF08882 Acetone_carb_G: Aceto 34.5 36 0.00078 24.1 2.1 54 71-128 24-84 (112)
66 KOG3556 Familial cylindromatos 33.9 95 0.0021 28.4 5.1 49 98-169 501-549 (724)
67 PF12252 SidE: Dot/Icm substra 33.8 42 0.0009 33.4 3.1 34 182-219 48-82 (1439)
68 COG4647 AcxC Acetone carboxyla 32.5 1.1E+02 0.0024 22.3 4.3 79 61-146 58-143 (165)
69 PF11164 DUF2948: Protein of u 31.4 2.2E+02 0.0048 21.2 8.4 71 138-209 32-108 (138)
70 COG0093 RplN Ribosomal protein 29.7 1E+02 0.0023 22.1 3.8 34 186-227 57-90 (122)
71 cd02425 Peptidase_C39F A sub-f 28.7 1.7E+02 0.0037 20.4 5.1 31 201-231 85-117 (126)
72 PF13002 LDB19: Arrestin_N ter 28.4 1.3E+02 0.0029 23.7 4.6 66 119-193 23-88 (191)
73 PF10748 DUF2531: Protein of u 28.0 1E+02 0.0022 22.7 3.7 63 182-257 33-103 (132)
74 KOG2906 RNA polymerase III sub 27.6 1.4E+02 0.0031 20.6 4.0 62 65-129 15-76 (105)
75 PF12333 Ipi1_N: Rix1 complex 27.3 30 0.00065 24.1 0.8 19 1-19 27-45 (102)
76 PF14690 zf-ISL3: zinc-finger 26.4 1.3E+02 0.0029 17.0 4.8 33 119-151 3-43 (47)
77 PF15499 Peptidase_C98: Ubiqui 26.3 26 0.00056 28.9 0.4 54 83-143 106-159 (275)
78 PF01841 Transglut_core: Trans 25.7 81 0.0017 21.6 2.9 20 198-217 92-112 (113)
79 smart00531 TFIIE Transcription 22.4 2.4E+02 0.0052 20.9 5.0 10 119-128 124-133 (147)
80 PF08770 SoxZ: Sulphur oxidati 22.2 1.8E+02 0.0039 20.1 4.0 57 183-256 13-78 (100)
81 PHA02998 RNA polymerase subuni 22.0 1.1E+02 0.0025 23.7 3.1 48 61-127 132-180 (195)
82 TIGR03037 anthran_nbaC 3-hydro 21.6 69 0.0015 24.4 1.9 23 99-126 137-159 (159)
83 cd02419 Peptidase_C39C A sub-f 21.3 3E+02 0.0064 19.2 6.5 33 199-231 82-116 (127)
84 PF09149 DUF1935: Domain of un 21.2 70 0.0015 22.4 1.7 24 201-224 21-45 (104)
85 PF01088 Peptidase_C12: Ubiqui 21.2 94 0.002 24.9 2.7 27 199-225 164-190 (214)
86 cd04480 RPA1_DBD_A_like RPA1_D 20.7 1.1E+02 0.0023 20.2 2.6 32 210-253 51-82 (86)
87 PF04473 DUF553: Transglutamin 20.7 1.9E+02 0.004 21.9 4.0 19 201-219 109-127 (153)
88 PF00123 Hormone_2: Peptide ho 20.4 60 0.0013 16.8 0.9 12 3-14 17-28 (28)
89 PRK13264 3-hydroxyanthranilate 20.3 72 0.0016 24.8 1.8 26 99-129 143-168 (177)
No 1
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.2e-53 Score=360.82 Aligned_cols=234 Identities=67% Similarity=1.108 Sum_probs=204.8
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCCCCCc
Q 024898 1 MHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETV 80 (261)
Q Consensus 1 ~QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~C~~~ 80 (261)
.||||+|||..|||.||++++.......... ............++|.++|+|++...++|..|+..
T Consensus 64 ~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~i~~~F~G~~~~~~~C~~C~~~ 129 (300)
T cd02663 64 MHQDAHEFLNFLLNEIAEILDAERKAEKANR--------------KLNNNNNAEPQPTWVHEIFQGILTNETRCLTCETV 129 (300)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhcccccc--------------cccccccCCcCCCChhhhCceEEEeeEEeCCCCCC
Confidence 4999999999999999999987643322110 00111222345678999999999999999999999
Q ss_pred cccccceEEEEeecCCCCCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCCeEEEEEeeeeeecccceeE
Q 024898 81 TARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYK 160 (261)
Q Consensus 81 ~~~~~~f~~l~l~i~~~~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~vL~i~l~Rf~~~~~~~~~~ 160 (261)
+.+.++|+.|+|++++..+|+++|+.|+.+|.++++++|.|++|+..+.+.++..|.++|++|+|||+||.++...++..
T Consensus 130 s~~~e~f~~Lsl~i~~~~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~ 209 (300)
T cd02663 130 SSRDETFLDLSIDVEQNTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQLNRYI 209 (300)
T ss_pred ccccceeEEeccCCCCcCCHHHHHHHhhcccccCCCCcEECCCCCCceeEEEEEEeccCCceeEEEEEeEEeecccCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998766789
Q ss_pred ecceEEeeCceeeCCCCCC---CCCceeEEcEEEeeeecCCCCeeEEEEEecCCcEEEeeCceeeEeChHHHHhhhcCCC
Q 024898 161 KLSYRVVFPLELKLSNTAE---DADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQ 237 (261)
Q Consensus 161 K~~~~v~~p~~l~l~~~~~---~~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~~~~W~~~nD~~V~~~~~~~v~~~~~~~~ 237 (261)
|+..+|.||..|+|..+.+ .+...|+|+|||+|.|.++++|||+||+|.+++||+|||+.|+++++++|.+..|+..
T Consensus 210 Ki~~~v~fp~~L~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~~k~~~~W~~fdD~~V~~~~~~~v~~~~~~~~ 289 (300)
T cd02663 210 KLFYRVVFPLELRLFNTTDDAENPDRLYELVAVVVHIGGGPNHGHYVSIVKSHGGWLLFDDETVEKIDENAVEEFFGDSP 289 (300)
T ss_pred ecCceEecCcEEeccccccccCCCCeEEEEEEEEEEecCCCCCCceEEEEECCCcEEEEcCCceEEcCHHHHHHhcCCCC
Confidence 9999999999999987642 3467999999999999878999999999999999999999999999999998776632
Q ss_pred CCCCCCCceEEEEEE
Q 024898 238 EYSSNTDHGYILFYE 252 (261)
Q Consensus 238 ~~~~~~~~~yil~Y~ 252 (261)
...+||||||+
T Consensus 290 ----~~~~aYiLfY~ 300 (300)
T cd02663 290 ----NQATAYVLFYQ 300 (300)
T ss_pred ----CCCceEEEEeC
Confidence 37899999996
No 2
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-53 Score=361.44 Aligned_cols=214 Identities=34% Similarity=0.620 Sum_probs=197.0
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCCCCCcc
Q 024898 2 HQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETVT 81 (261)
Q Consensus 2 QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~C~~~~ 81 (261)
|+||||||++++|.|+..+-..... ......+.++|+++|+|-+++.++|..|+.++
T Consensus 193 QEDAHEFLr~~vd~mqk~cL~g~~~-----------------------~~~~sq~ttlv~~iFGG~LrS~vkC~~C~~vS 249 (545)
T KOG1865|consen 193 QEDAHEFLRFTVDAMQKACLPGHKQ-----------------------VDPRSQDTTLVHQIFGGYLRSQIKCLHCKGVS 249 (545)
T ss_pred hhhHHHHHHHHHHHHHHhhcCCCcc-----------------------CCcccccceehhhhhccchhhceecccCCCcc
Confidence 9999999999999999977521111 12223467899999999999999999999999
Q ss_pred ccccceEEEEeecCCCCCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCCeEEEEEeeeeeecccceeEe
Q 024898 82 ARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKK 161 (261)
Q Consensus 82 ~~~~~f~~l~l~i~~~~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~vL~i~l~Rf~~~~~~~~~~K 161 (261)
.++|+++.|+|.|....+|+++|+.|...|.++|+++|.|++|++++.+.|+.+|.++|+||+|+|+||+. ++..|
T Consensus 250 ~tyE~~~dltvei~d~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF~~----~~~gK 325 (545)
T KOG1865|consen 250 DTYEPYLDLTLEIQDASSLQQALEQFTKPEKLDGENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRFSN----GTGGK 325 (545)
T ss_pred cccccccceEEEeccchhHHHHHHHhhhHHhhCCccccccchhhhhCcccceeeeecCCceEEEeeehhcc----Ccccc
Confidence 99999999999999888999999999999999999999999999999999999999999999999999997 46689
Q ss_pred cceEEeeCceeeCCCCCCC---CCceeEEcEEEeeeecCCCCeeEEEEEec-CCcEEEeeCceeeEeChHHHHhhhcCCC
Q 024898 162 LSYRVVFPLELKLSNTAED---ADIEYSLFAVVVHVGSGPNHGHYVSLVKS-HNHWLFFDDENVEMIDESAVQTFFGSAQ 237 (261)
Q Consensus 162 ~~~~v~~p~~l~l~~~~~~---~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~-~~~W~~~nD~~V~~~~~~~v~~~~~~~~ 237 (261)
|.++|.||+.|||.+|++. ...+|.|+|||+|.|....+|||+||||. +|+||.+||+.|+.++.+.|+
T Consensus 326 I~K~I~fPE~LDl~PyMS~~~e~s~~Y~LYavlVH~g~~~~~GHY~cYvks~~g~Wy~~DDS~V~~~~~~~VL------- 398 (545)
T KOG1865|consen 326 ISKPVSFPETLDLQPYMSQPNEGSTVYKLYAVLVHLGTSCHSGHYFCYVKSQNGQWYKMDDSEVTQSSIESVL------- 398 (545)
T ss_pred cccccCCcccccccccccCCCCCCceEEEEEEEEeccccccCCceEEEEEcCCCceEEccCceeeecccccee-------
Confidence 9999999999999999974 37899999999999998999999999999 889999999999999999999
Q ss_pred CCCCCCCceEEEEEEEe
Q 024898 238 EYSSNTDHGYILFYESL 254 (261)
Q Consensus 238 ~~~~~~~~~yil~Y~r~ 254 (261)
...||||||.|.
T Consensus 399 -----sq~AYmLfY~R~ 410 (545)
T KOG1865|consen 399 -----SQQAYILFYARK 410 (545)
T ss_pred -----cccceEEEEEee
Confidence 789999999997
No 3
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.6e-50 Score=345.41 Aligned_cols=224 Identities=27% Similarity=0.552 Sum_probs=198.2
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCCCCCc
Q 024898 1 MHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETV 80 (261)
Q Consensus 1 ~QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~C~~~ 80 (261)
.||||+|||.+|||.|++++..... ....++|.++|.|++...++|..|+..
T Consensus 87 ~QqDa~EFl~~lLd~L~~~l~~~~~----------------------------~~~~~~i~~~F~G~~~~~~~C~~C~~~ 138 (324)
T cd02668 87 QQQDAQEFSKLFLSLLEAKLSKSKN----------------------------PDLKNIVQDLFRGEYSYVTQCSKCGRE 138 (324)
T ss_pred cccCHHHHHHHHHHHHHHHHhhccC----------------------------CcccchhhhhcceEEEEEEEeCCCCCc
Confidence 4999999999999999998864310 012357999999999999999999999
Q ss_pred cccccceEEEEeecCCCCCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCCeEEEEEeeeeeecccceeE
Q 024898 81 TARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYK 160 (261)
Q Consensus 81 ~~~~~~f~~l~l~i~~~~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~vL~i~l~Rf~~~~~~~~~~ 160 (261)
+...++|+.|+|++++..+|+++|+.++.+|.+++++.|.|++|+..+.+.++..|.++|++|+|||+||.++..++...
T Consensus 139 s~~~e~f~~l~l~i~~~~sl~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~~ 218 (324)
T cd02668 139 SSLPSKFYELELQLKGHKTLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKK 218 (324)
T ss_pred cccccccEEEEEEecccCCHHHHHHHhhCceecCCCccccCCCCCceeeeEEEEEecCCCCeEEEEEEcceeecccCcce
Confidence 99999999999999988999999999999999999999999999999999999999999999999999999998888889
Q ss_pred ecceEEeeCceeeCCCCCCC---CCceeEEcEEEeeeecCCCCeeEEEEEec--CCcEEEeeCceeeEeChHHHHhhhcC
Q 024898 161 KLSYRVVFPLELKLSNTAED---ADIEYSLFAVVVHVGSGPNHGHYVSLVKS--HNHWLFFDDENVEMIDESAVQTFFGS 235 (261)
Q Consensus 161 K~~~~v~~p~~l~l~~~~~~---~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~--~~~W~~~nD~~V~~~~~~~v~~~~~~ 235 (261)
|+...|.||..|||.+++.. +...|+|+|||+|.|.++++|||+|++|. +++||+|||+.|++++.+.+....+.
T Consensus 219 Ki~~~v~fp~~Ldl~~~~~~~~~~~~~Y~L~~vI~H~G~~~~~GHY~~~~k~~~~~~W~~fdD~~V~~i~~~~~~~~~~~ 298 (324)
T cd02668 219 KLNASISFPEILDMGEYLAESDEGSYVYELSGVLIHQGVSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKLGNSE 298 (324)
T ss_pred eCCcEEECCCeEechhhcccccCCCcEEEEEEEEEEcCCCCCCEeeEEEEECCCCCcEEEEECCceEEcCHHHhhccccc
Confidence 99999999999999998643 46789999999999987899999999997 58999999999999999999765442
Q ss_pred CC------CC---CCCCCceEEEEEE
Q 024898 236 AQ------EY---SSNTDHGYILFYE 252 (261)
Q Consensus 236 ~~------~~---~~~~~~~yil~Y~ 252 (261)
.. .. .....+||||||+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~y~l~y~ 324 (324)
T cd02668 299 DPAKPRKSEIKKGTHSSRTAYMLVYK 324 (324)
T ss_pred ccccccccccCCCccccCceEEEEeC
Confidence 21 00 1237899999996
No 4
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.9e-50 Score=344.83 Aligned_cols=204 Identities=36% Similarity=0.662 Sum_probs=186.7
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCCCCCc
Q 024898 1 MHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETV 80 (261)
Q Consensus 1 ~QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~C~~~ 80 (261)
.||||+|||..||+.|+. +|.++|+|++.+.++|.+|+.+
T Consensus 80 ~QqDa~EFl~~lLd~l~~----------------------------------------~i~~~F~G~~~~~i~C~~C~~~ 119 (327)
T cd02664 80 SQQDCSEYLRYLLDRLHT----------------------------------------LIEKMFGGKLSTTIRCLNCNST 119 (327)
T ss_pred CcCCHHHHHHHHHHHHHH----------------------------------------HHHhhCcEEeEeEEEcCCCCCE
Confidence 599999999999999982 2778999999999999999999
Q ss_pred cccccceEEEEeecCCCCCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCCeEEEEEeeeeeecccceeE
Q 024898 81 TARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYK 160 (261)
Q Consensus 81 ~~~~~~f~~l~l~i~~~~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~vL~i~l~Rf~~~~~~~~~~ 160 (261)
+.+.++|..|+|++| +++++|+.++.+|.+++++.|.|++|++.+.+.++..|.++|++|+|||+||.++..++...
T Consensus 120 s~~~e~f~~l~L~i~---sl~~~l~~~~~~E~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~ 196 (327)
T cd02664 120 SARTERFRDLDLSFP---SVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKTHVRE 196 (327)
T ss_pred ecccccceeeecCCC---CHHHHHHHhcCeeEccCCCceeCCccCCccceeEEEEcccCChhhEEEeeeeEEccccCcce
Confidence 999999999999998 89999999999999999999999999999999999999999999999999999999888889
Q ss_pred ecceEEeeCceeeCCCCCC----------------------CCCceeEEcEEEeeeecCCCCeeEEEEEec-C-------
Q 024898 161 KLSYRVVFPLELKLSNTAE----------------------DADIEYSLFAVVVHVGSGPNHGHYVSLVKS-H------- 210 (261)
Q Consensus 161 K~~~~v~~p~~l~l~~~~~----------------------~~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~-~------- 210 (261)
|+..+|.||..|||..+.. .+...|+|+|||+|.|.++++|||+||+|. .
T Consensus 197 Ki~~~v~fp~~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~Vi~H~G~~~~~GHY~a~~r~~~~~~~~~~ 276 (327)
T cd02664 197 KIMDNVSINEVLSLPVRVESKSSESPLEKKEEESGDDGELVTRQVHYRLYAVVVHSGYSSESGHYFTYARDQTDADSTGQ 276 (327)
T ss_pred ecCceEecCCEEecCccccccccccccccccccccccccccCCCceEEEEEEEEEccCCCCCcceEEEEecCCccccccc
Confidence 9999999999999987752 135789999999999987899999999997 3
Q ss_pred --------------CcEEEeeCceeeEeChHHHHhhhcCCCCCCCCCCceEEEEEE
Q 024898 211 --------------NHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYE 252 (261)
Q Consensus 211 --------------~~W~~~nD~~V~~~~~~~v~~~~~~~~~~~~~~~~~yil~Y~ 252 (261)
++||+|||+.|+++++++|.+..+++. ..+||||||+
T Consensus 277 ~~~~~~~~~~~~~~~~W~~fnD~~V~~~~~~~v~~~~~~~~-----~~~aYlLfY~ 327 (327)
T cd02664 277 ECPEPKDAEENDESKNWYLFNDSRVTFSSFESVQNVTSRFP-----KDTPYILFYE 327 (327)
T ss_pred cccccccccccCCCCCEEEEeCCceEECCHHHHHHhhCCCC-----CCCEEEEEeC
Confidence 789999999999999999987544433 7899999996
No 5
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=9.3e-49 Score=333.26 Aligned_cols=205 Identities=36% Similarity=0.675 Sum_probs=182.7
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCCCCCc
Q 024898 1 MHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETV 80 (261)
Q Consensus 1 ~QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~C~~~ 80 (261)
+||||+|||..|||.|+. +|.++|+|++...++|.+|+..
T Consensus 104 ~QQDA~EFl~~LLd~L~~----------------------------------------~i~~~F~g~~~~~~~C~~C~~~ 143 (332)
T cd02671 104 LQHDAQEVLQCILGNIQE----------------------------------------LVEKDFQGQLVLRTRCLECETF 143 (332)
T ss_pred cccCHHHHHHHHHHHHHH----------------------------------------HHHhhhceEEEEEEEeCCCCCe
Confidence 599999999999999984 2667899999999999999999
Q ss_pred cccccceEEEEeecCCC-------------------CCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCC
Q 024898 81 TARDETFFDLSLDIEQN-------------------SSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPH 141 (261)
Q Consensus 81 ~~~~~~f~~l~l~i~~~-------------------~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~ 141 (261)
+.+.++|+.|+|+++.. .+|+++|+.|+++|.++|+++|.|++|+..+.+.++..|.++|+
T Consensus 144 s~~~E~f~~lsL~i~~~~~~~~~~~~~~~~~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C~~C~~~~~a~k~~~~~~~P~ 223 (332)
T cd02671 144 TERREDFQDISVPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPE 223 (332)
T ss_pred eceecccEEEEEEeCCCcccccccccccccccccccCCHHHHHHHhCCcceecCCCCeeCCCCCCceeEEEEEEEecCCC
Confidence 99999999999999864 48999999999999999999999999999999999999999999
Q ss_pred eEEEEEeeeeeeccc----ceeEecceEEeeCceeeCCCCCCC-CCceeEEcEEEeeeecCCCCeeEEEEEecCCcEEEe
Q 024898 142 TLVIHLKRFKYIEQL----GRYKKLSYRVVFPLELKLSNTAED-ADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFF 216 (261)
Q Consensus 142 vL~i~l~Rf~~~~~~----~~~~K~~~~v~~p~~l~l~~~~~~-~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~~~~W~~~ 216 (261)
+|+|||+||.++... +...|+..+|.||..|++.++... ....|+|+|||+|.|.+.++|||+||+| ||+|
T Consensus 224 vL~i~LkRF~~~~~~~~~~~~~~Ki~~~v~fp~~L~~~~~~~~~~~~~Y~L~~VI~H~G~~~~~GHY~a~vr----W~~f 299 (332)
T cd02671 224 VITIHLKCFAANGSEFDCYGGLSKVNTPLLTPLKLSLEEWSTKPKNDVYRLFAVVMHSGATISSGHYTAYVR----WLLF 299 (332)
T ss_pred EEEEEeeeeccccccccccCCceecCccccCccccccccccCCCCCCeEEEEEEEEEcCCCCCCCeEEEEEE----EEEE
Confidence 999999999986532 356899999999999999877644 4689999999999998789999999999 9999
Q ss_pred eCceeeEeChHHHHhhhcCCCCCCCCCCceEEEEEE
Q 024898 217 DDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYE 252 (261)
Q Consensus 217 nD~~V~~~~~~~v~~~~~~~~~~~~~~~~~yil~Y~ 252 (261)
||+.|++++++++.+...+. ..+..+||||||+
T Consensus 300 dD~~V~~~~~~~~~~~~~~~---~~~~~~aYiLfY~ 332 (332)
T cd02671 300 DDSEVKVTEEKDFLEALSPN---TSSTSTPYLLFYK 332 (332)
T ss_pred cCcceEEccHHHHHhhcCCC---CCCCCceEEEEEC
Confidence 99999999999998643221 1236899999995
No 6
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.2e-48 Score=334.02 Aligned_cols=224 Identities=30% Similarity=0.565 Sum_probs=198.9
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCCCCCc
Q 024898 1 MHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETV 80 (261)
Q Consensus 1 ~QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~C~~~ 80 (261)
.||||+|||..||+.|++++... ...++|.++|+|.+...++|..|+..
T Consensus 85 ~QqDa~Efl~~ll~~l~~~~~~~-------------------------------~~~~~i~~lF~g~~~~~~~C~~C~~~ 133 (334)
T cd02659 85 EQHDVQEFFRVLFDKLEEKLKGT-------------------------------GQEGLIKNLFGGKLVNYIICKECPHE 133 (334)
T ss_pred cchhHHHHHHHHHHHHHHHhccC-------------------------------cccchhhhhCceEEEeEEEecCCCce
Confidence 49999999999999999987531 12346999999999999999999999
Q ss_pred cccccceEEEEeecCCCCCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCCeEEEEEeeeeeecccceeE
Q 024898 81 TARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYK 160 (261)
Q Consensus 81 ~~~~~~f~~l~l~i~~~~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~vL~i~l~Rf~~~~~~~~~~ 160 (261)
+...++|+.|+|++++..+++++|+.++.++.+++.+.|.|++|++...+.++..|.++|++|+|+|+||.++...++..
T Consensus 134 s~~~e~f~~l~l~i~~~~~l~~~l~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vLii~l~Rf~~~~~~~~~~ 213 (334)
T cd02659 134 SEREEYFLDLQVAVKGKKNLEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRI 213 (334)
T ss_pred ecccccceEEEEEcCCCCCHHHHHHHhcCeeEecCCccEecCcCCCcccEEEEEEeecCCCEEEEEeeeeEEccccCcce
Confidence 99999999999999998999999999999999999999999999999999999999999999999999999988878889
Q ss_pred ecceEEeeCceeeCCCCCCC--------------CCceeEEcEEEeeeecCCCCeeEEEEEec--CCcEEEeeCceeeEe
Q 024898 161 KLSYRVVFPLELKLSNTAED--------------ADIEYSLFAVVVHVGSGPNHGHYVSLVKS--HNHWLFFDDENVEMI 224 (261)
Q Consensus 161 K~~~~v~~p~~l~l~~~~~~--------------~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~--~~~W~~~nD~~V~~~ 224 (261)
|++..|.||..|+|.+++.. ....|+|+|||+|.|. .++|||+|++|. +++|++|||+.|+++
T Consensus 214 K~~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~vI~H~G~-~~~GHY~~~vk~~~~~~W~~~nD~~V~~i 292 (334)
T cd02659 214 KINDRFEFPLELDMEPYTEKGLAKKEGDSEKKDSESYIYELHGVLVHSGD-AHGGHYYSYIKDRDDGKWYKFNDDVVTPF 292 (334)
T ss_pred eCCceEeCCceecCccccccccccccccccccCCCCeeEEEEEEEEecCC-CCCCCeEEEEECCCCCceEEEeCcccEEC
Confidence 99999999999999987643 3578999999999997 899999999998 599999999999999
Q ss_pred ChHHHHh-hhcCCCCCC---------CCCCceEEEEEEEeCC
Q 024898 225 DESAVQT-FFGSAQEYS---------SNTDHGYILFYESLGA 256 (261)
Q Consensus 225 ~~~~v~~-~~~~~~~~~---------~~~~~~yil~Y~r~~~ 256 (261)
++++|.+ .+||.+... ..+.+||||||+|+++
T Consensus 293 ~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~ay~l~Y~~~~~ 334 (334)
T cd02659 293 DPNDAEEECFGGEETQKTYDSGPRAFKRTTNAYMLFYERKSP 334 (334)
T ss_pred CHHHHHHHcCCCccccccccccccccccccceEEEEEEEeCC
Confidence 9999975 555543321 3357899999999763
No 7
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.7e-48 Score=330.57 Aligned_cols=211 Identities=25% Similarity=0.379 Sum_probs=189.7
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCCCC-C
Q 024898 1 MHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCE-T 79 (261)
Q Consensus 1 ~QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~C~-~ 79 (261)
.||||+|||..|||.|++++... ....++|.++|+|++...++|..|+ .
T Consensus 89 ~QqDA~EFl~~lld~L~~~~~~~------------------------------~~~~~~i~~~F~g~~~~~~~C~~C~~~ 138 (305)
T cd02657 89 AQQDAEECWSQLLSVLSQKLPGA------------------------------GSKGSFIDQLFGIELETKMKCTESPDE 138 (305)
T ss_pred cccCHHHHHHHHHHHHHHHhccc------------------------------CCCCcHHHHhhceEEEEEEEcCCCCCC
Confidence 49999999999999999988541 0124569999999999999999999 7
Q ss_pred ccccccceEEEEeecCCC---CCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCCeEEEEEeeeeeeccc
Q 024898 80 VTARDETFFDLSLDIEQN---SSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQL 156 (261)
Q Consensus 80 ~~~~~~~f~~l~l~i~~~---~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~vL~i~l~Rf~~~~~~ 156 (261)
++.+.++|..|+|+++.. .+|+++|+.+++++.. ..|+.|+......++..|.++|++|+|||+||.++...
T Consensus 139 ~~~~~e~f~~Lsl~i~~~~~~~~l~~~L~~~~~~~~~-----~~~~~~~~~~~~~k~~~i~~lP~vLii~LkRF~~~~~~ 213 (305)
T cd02657 139 EEVSTESEYKLQCHISITTEVNYLQDGLKKGLEEEIE-----KHSPTLGRDAIYTKTSRISRLPKYLTVQFVRFFWKRDI 213 (305)
T ss_pred CccccccceEEEeecCCCcccccHHHHHHHhhhhhhh-----hcCcccCCCceEEEEEEeccCCcEEEEEEECCcccccc
Confidence 899999999999999876 5899999998876654 47999999888999999999999999999999998887
Q ss_pred ceeEecceEEeeCceeeCCCCCCCCCceeEEcEEEeeeecCCCCeeEEEEEecC--CcEEEeeCceeeEeChHHHHhhhc
Q 024898 157 GRYKKLSYRVVFPLELKLSNTAEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSH--NHWLFFDDENVEMIDESAVQTFFG 234 (261)
Q Consensus 157 ~~~~K~~~~v~~p~~l~l~~~~~~~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~~--~~W~~~nD~~V~~~~~~~v~~~~~ 234 (261)
+...|+..+|.||..|||.++.. ++..|+|+|||+|.|.++++|||+||+|.. ++||.|||+.|+++++++|.+..|
T Consensus 214 ~~~~Ki~~~v~fP~~Ldl~~~~~-~~~~Y~L~~vI~H~G~~~~~GHY~~~~~~~~~~~W~~fdD~~V~~~~~~~v~~~~~ 292 (305)
T cd02657 214 QKKAKILRKVKFPFELDLYELCT-PSGYYELVAVITHQGRSADSGHYVAWVRRKNDGKWIKFDDDKVSEVTEEDILKLSG 292 (305)
T ss_pred CceeecCcEEECCceEecccccC-CCCcEEEEEEEEecCCCCCCcEEEEEEEcCCCCeEEEEECCceEEeCHHHHHhhcC
Confidence 88899999999999999999887 568999999999999878999999999995 899999999999999999998777
Q ss_pred CCCCCCCCCCceEEEEEE
Q 024898 235 SAQEYSSNTDHGYILFYE 252 (261)
Q Consensus 235 ~~~~~~~~~~~~yil~Y~ 252 (261)
|+. ..+||||||+
T Consensus 293 ~~~-----~~~aYiL~Y~ 305 (305)
T cd02657 293 GGD-----WHIAYILLYK 305 (305)
T ss_pred CCC-----CceEEEEEEC
Confidence 753 6799999996
No 8
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.1e-48 Score=332.30 Aligned_cols=214 Identities=36% Similarity=0.657 Sum_probs=190.2
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCCCCCc
Q 024898 1 MHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETV 80 (261)
Q Consensus 1 ~QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~C~~~ 80 (261)
.||||+|||.+|||.|++++....... .......++|.++|+|++...++|..|+..
T Consensus 87 ~QqDa~Efl~~ll~~l~~~~~~~~~~~-----------------------~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~ 143 (328)
T cd02660 87 SQQDAHEFFQFLLDQLHTHYGGDKNEA-----------------------NDESHCNCIIHQTFSGSLQSSVTCQRCGGV 143 (328)
T ss_pred ccccHHHHHHHHHHHHHHHhhcccccc-----------------------cccccCCceeEEecccEEEeeeEcCCCCCc
Confidence 399999999999999999886543211 011233578999999999999999999999
Q ss_pred cccccceEEEEeecCCC---------------CCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCCeEEE
Q 024898 81 TARDETFFDLSLDIEQN---------------SSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVI 145 (261)
Q Consensus 81 ~~~~~~f~~l~l~i~~~---------------~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~vL~i 145 (261)
+.+.++|+.|+|+++.. .+|+++|+.++.+|.+.+.+ |.|++|+..+.+.++..|.++|++|+|
T Consensus 144 s~~~e~f~~lsl~i~~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~~~~~~-~~C~~C~~~~~~~~~~~i~~lP~~Lii 222 (328)
T cd02660 144 STTVDPFLDLSLDIPNKSTPSWALGESGVSGTPTLSDCLDRFTRPEKLGDFA-YKCSGCGSTQEATKQLSIKKLPPVLCF 222 (328)
T ss_pred cceecccceeeeeccccccccccccccCCCCCCCHHHHHHHhcCccccCCCC-ccCCCCCCccceEEEEEecCCCceeEE
Confidence 99999999999999875 79999999999999998766 899999999999999999999999999
Q ss_pred EEeeeeeecccceeEecceEEeeCceeeCCCCCC------------CCCceeEEcEEEeeeecCCCCeeEEEEEecC-Cc
Q 024898 146 HLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAE------------DADIEYSLFAVVVHVGSGPNHGHYVSLVKSH-NH 212 (261)
Q Consensus 146 ~l~Rf~~~~~~~~~~K~~~~v~~p~~l~l~~~~~------------~~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~~-~~ 212 (261)
||+||.++.. +...|+..+|.||..|||.+++. .+...|+|+|||.|.|. .++|||+|++|.. ++
T Consensus 223 ~lkRf~~~~~-~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~-~~~GHY~~~~~~~~~~ 300 (328)
T cd02660 223 QLKRFEHSLN-KTSRKIDTYVQFPLELNMTPYTSSSIGDTQDSNSLDPDYTYDLFAVVVHKGT-LDTGHYTAYCRQGDGQ 300 (328)
T ss_pred EEEeEEecCC-CCCcCCCcEEeCCCEechhhhcccccccccccccCCCCceEEEEEEEEeecc-CCCCcEEEEEECCCCc
Confidence 9999999875 45689999999999999998765 24789999999999997 7899999999995 99
Q ss_pred EEEeeCceeeEeChHHHHhhhcCCCCCCCCCCceEEEEEE
Q 024898 213 WLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYE 252 (261)
Q Consensus 213 W~~~nD~~V~~~~~~~v~~~~~~~~~~~~~~~~~yil~Y~ 252 (261)
||+|||+.|+++++++|+ ..+||||||.
T Consensus 301 W~~~nD~~V~~~~~~~v~------------~~~ayil~Y~ 328 (328)
T cd02660 301 WFKFDDAMITRVSEEEVL------------KSQAYLLFYH 328 (328)
T ss_pred EEEEECCeeEECCHHHhc------------CCCcEEEEeC
Confidence 999999999999999998 6799999994
No 9
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.4e-48 Score=325.18 Aligned_cols=195 Identities=39% Similarity=0.688 Sum_probs=178.2
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCCCCCc
Q 024898 1 MHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETV 80 (261)
Q Consensus 1 ~QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~C~~~ 80 (261)
.||||+|||..|||.|+. +|+++|.|++...+.|..|+..
T Consensus 50 ~QqDA~Efl~~lld~l~~----------------------------------------~i~~~F~G~~~~~i~C~~C~~~ 89 (279)
T cd02667 50 QQQDSHELLRYLLDGLRT----------------------------------------FIDSIFGGELTSTIMCESCGTV 89 (279)
T ss_pred chhhHHHHHHHHHHHHHH----------------------------------------hhhhhcceEEEEEEEcCCCCCE
Confidence 499999999999999982 2777999999999999999999
Q ss_pred cccccceEEEEeecCC----CCCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCCeEEEEEeeeeeeccc
Q 024898 81 TARDETFFDLSLDIEQ----NSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQL 156 (261)
Q Consensus 81 ~~~~~~f~~l~l~i~~----~~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~vL~i~l~Rf~~~~~~ 156 (261)
+.+.++|..|+|+++. ..+|+++|+.|+.+|.++++++|.|++|++ +.++..|.++|++|+|||+||.++...
T Consensus 90 s~~~E~f~~L~Lp~~~~~~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~---a~k~~~i~~~P~~Lii~LkRF~~~~~~ 166 (279)
T cd02667 90 SLVYEPFLDLSLPRSDEIKSECSIESCLKQFTEVEILEGNNKFACENCTK---AKKQYLISKLPPVLVIHLKRFQQPRSA 166 (279)
T ss_pred eCccccceEEecCCCcccCCCCCHHHHHHhhcCeeEecCCCcccCCccCc---eeeEeEhhhCCCeEEEEEeccccCccc
Confidence 9999999999998754 468999999999999999999999999988 788999999999999999999998653
Q ss_pred ceeEecceEEeeCceeeCCCCCCC--------CCceeEEcEEEeeeecCCCCeeEEEEEec-------------------
Q 024898 157 GRYKKLSYRVVFPLELKLSNTAED--------ADIEYSLFAVVVHVGSGPNHGHYVSLVKS------------------- 209 (261)
Q Consensus 157 ~~~~K~~~~v~~p~~l~l~~~~~~--------~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~------------------- 209 (261)
...|+..+|.||..|||.+++.. ....|+|+|||+|.|.. ++|||+||+|.
T Consensus 167 -~~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~Y~L~~vi~H~G~~-~~GHY~a~v~~~~~~~~~~~~~~~~~~~~~ 244 (279)
T cd02667 167 -NLRKVSRHVSFPEILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTM-RSGHYVAYVKVRPPQQRLSDLTKSKPAADE 244 (279)
T ss_pred -CceecCceEeCCCccchhhccCccccccccCCCceEEEEEEEEEeCCC-CCCEeEEEEEcCcccccccccccccccccc
Confidence 56899999999999999998754 46799999999999994 99999999997
Q ss_pred ----CCcEEEeeCceeeEeChHHHHhhhcCCCCCCCCCCceEEEEEE
Q 024898 210 ----HNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYE 252 (261)
Q Consensus 210 ----~~~W~~~nD~~V~~~~~~~v~~~~~~~~~~~~~~~~~yil~Y~ 252 (261)
+++||+|||+.|++++.++|. ..+||||||+
T Consensus 245 ~~~~~~~W~~~dD~~V~~v~~~~v~------------~~~aYiLfYe 279 (279)
T cd02667 245 AGPGSGQWYYISDSDVREVSLEEVL------------KSEAYLLFYE 279 (279)
T ss_pred CCCCCCcEEEEECCccEECCHHHhc------------cCCcEEEEeC
Confidence 579999999999999999998 6789999996
No 10
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.6e-47 Score=320.34 Aligned_cols=216 Identities=35% Similarity=0.632 Sum_probs=191.5
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCCCCCc
Q 024898 1 MHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETV 80 (261)
Q Consensus 1 ~QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~C~~~ 80 (261)
.||||+|||.+|||.|++++......... ........+++.++|+|++...++|..|+..
T Consensus 85 ~qqDa~Efl~~ll~~l~~~~~~~~~~~~~--------------------~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~ 144 (304)
T cd02661 85 RQEDAHEFLRYLLDAMQKACLDRFKKLKA--------------------VDPSSQETTLVQQIFGGYLRSQVKCLNCKHV 144 (304)
T ss_pred chhhHHHHHHHHHHHHHHHHhhhcccccc--------------------cCccccCCChhhhcCCcEEeeeEEeCCCCCC
Confidence 49999999999999999987653221110 0111234578999999999999999999999
Q ss_pred cccccceEEEEeecCCCCCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCCeEEEEEeeeeeecccceeE
Q 024898 81 TARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYK 160 (261)
Q Consensus 81 ~~~~~~f~~l~l~i~~~~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~vL~i~l~Rf~~~~~~~~~~ 160 (261)
+.+.++|..|.|+++...+++++|+.++.+|.+++++.|.|++|++...+.++..|.++|++|+|+|+||.++ ...
T Consensus 145 s~~~e~~~~l~l~i~~~~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~iL~i~l~Rf~~~----~~~ 220 (304)
T cd02661 145 SNTYDPFLDLSLDIKGADSLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNF----RGG 220 (304)
T ss_pred cCccccceeeeeecCCCCcHHHHHHHhcCceeeCCCCCeeCCCCCCccceEEEEEEecCCcEEEEEEeccccC----Ccc
Confidence 9999999999999999899999999999999999988999999999999999999999999999999999987 347
Q ss_pred ecceEEeeCceeeCCCCCCC---CCceeEEcEEEeeeecCCCCeeEEEEEec-CCcEEEeeCceeeEeChHHHHhhhcCC
Q 024898 161 KLSYRVVFPLELKLSNTAED---ADIEYSLFAVVVHVGSGPNHGHYVSLVKS-HNHWLFFDDENVEMIDESAVQTFFGSA 236 (261)
Q Consensus 161 K~~~~v~~p~~l~l~~~~~~---~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~-~~~W~~~nD~~V~~~~~~~v~~~~~~~ 236 (261)
|+...|.||..|+|.++... +...|+|+|||+|.|..+++|||+||+|. +++|++|||+.|+++++++|+
T Consensus 221 Ki~~~v~f~~~L~l~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~~~W~~~nD~~V~~v~~~~v~------ 294 (304)
T cd02661 221 KINKQISFPETLDLSPYMSQPNDGPLKYKLYAVLVHSGFSPHSGHYYCYVKSSNGKWYNMDDSKVSPVSIETVL------ 294 (304)
T ss_pred ccCCeEecCCeechhhccccCCCCCceeeEEEEEEECCCCCCCcCCEEEEECCCCCEEEEeCCeeEECCHHHhc------
Confidence 99999999999999988764 47899999999999997799999999998 899999999999999999998
Q ss_pred CCCCCCCCceEEEEEE
Q 024898 237 QEYSSNTDHGYILFYE 252 (261)
Q Consensus 237 ~~~~~~~~~~yil~Y~ 252 (261)
..+||||||.
T Consensus 295 ------~~~aYil~Y~ 304 (304)
T cd02661 295 ------SQKAYILFYI 304 (304)
T ss_pred ------CCCcEEEEeC
Confidence 6799999993
No 11
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.1e-46 Score=302.41 Aligned_cols=197 Identities=41% Similarity=0.714 Sum_probs=180.0
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCCCCCc
Q 024898 1 MHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETV 80 (261)
Q Consensus 1 ~QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~C~~~ 80 (261)
.||||+||+.+||+.|+. ++.++|+|++..+++|..|+..
T Consensus 21 ~QqDa~Ef~~~ll~~l~~----------------------------------------~i~~~F~~~~~~~~~C~~C~~~ 60 (230)
T cd02674 21 DQQDAQEFLLFLLDGLHS----------------------------------------IIVDLFQGQLKSRLTCLTCGKT 60 (230)
T ss_pred hhhhHHHHHHHHHHHHhh----------------------------------------hHHheeCCEEeCcEEcCCCcCC
Confidence 499999999999999981 2778999999999999999999
Q ss_pred cccccceEEEEeecCCCC------CHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCCeEEEEEeeeeeec
Q 024898 81 TARDETFFDLSLDIEQNS------SITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIE 154 (261)
Q Consensus 81 ~~~~~~f~~l~l~i~~~~------sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~vL~i~l~Rf~~~~ 154 (261)
+...++|+.|.|++|... +|+++|+.++.++.+++.+.+.|++|+..+.+.++..|.++|++|+|+|+||.++.
T Consensus 61 ~~~~e~~~~l~l~ip~~~~~~~~~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~~ 140 (230)
T cd02674 61 STTFEPFTYLSLPIPSGSGDAPKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSR 140 (230)
T ss_pred cceecceeEEEEecccccCCCCCCCHHHHHHHhcCccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhheecCC
Confidence 999999999999998754 99999999999999999999999999999999999999999999999999999987
Q ss_pred ccceeEecceEEeeCc-eeeCCCCC----CCCCceeEEcEEEeeeecCCCCeeEEEEEecC--CcEEEeeCceeeEeChH
Q 024898 155 QLGRYKKLSYRVVFPL-ELKLSNTA----EDADIEYSLFAVVVHVGSGPNHGHYVSLVKSH--NHWLFFDDENVEMIDES 227 (261)
Q Consensus 155 ~~~~~~K~~~~v~~p~-~l~l~~~~----~~~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~~--~~W~~~nD~~V~~~~~~ 227 (261)
+...|+..+|.||. .+++.++. .....+|+|+|||+|.|.. ++|||+|++|.. ++|++|||+.|++++++
T Consensus 141 --~~~~K~~~~v~~~~~~l~l~~~~~~~~~~~~~~Y~L~~vI~H~G~~-~~GHY~~~~~~~~~~~W~~fnD~~V~~i~~~ 217 (230)
T cd02674 141 --GSTRKLTTPVTFPLNDLDLTPYVDTRSFTGPFKYDLYAVVNHYGSL-NGGHYTAYCKNNETNDWYKFDDSRVTKVSES 217 (230)
T ss_pred --CCcccCCceEeccccccccccccCcccCCCCceEEEEEEEEeeCCC-CCcEEEEEEECCCCCceEEEcCCeEEEcCHH
Confidence 46789999999996 48888762 3457899999999999994 999999999994 99999999999999999
Q ss_pred HHHhhhcCCCCCCCCCCceEEEEEE
Q 024898 228 AVQTFFGSAQEYSSNTDHGYILFYE 252 (261)
Q Consensus 228 ~v~~~~~~~~~~~~~~~~~yil~Y~ 252 (261)
++. +.+||||||+
T Consensus 218 ~~~------------~~~~YlL~Y~ 230 (230)
T cd02674 218 SVV------------SSSAYILFYE 230 (230)
T ss_pred Hcc------------CCCceEEEeC
Confidence 984 7899999996
No 12
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.1e-45 Score=295.94 Aligned_cols=205 Identities=24% Similarity=0.365 Sum_probs=171.3
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCCCCCc
Q 024898 1 MHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETV 80 (261)
Q Consensus 1 ~QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~C~~~ 80 (261)
+||||+||+..||+.|++++...... ........++|.++|.|++...+.| |+..
T Consensus 21 ~QQDa~Ef~~~Lld~Le~~l~~~~~~-----------------------~~~~~~~~~~i~~lF~G~~~~~~~~--~~~~ 75 (228)
T cd02665 21 QQQDVSEFTHLLLDWLEDAFQAAAEA-----------------------ISPGEKSKNPMVQLFYGTFLTEGVL--EGKP 75 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccc-----------------------ccccccccchHhhceEEEEEEEEEE--CCCc
Confidence 59999999999999999998643210 0011124567999999999887776 7778
Q ss_pred cccccceEEEEeecCCCCCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCCeEEEEEeeeeeecccceeE
Q 024898 81 TARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYK 160 (261)
Q Consensus 81 ~~~~~~f~~l~l~i~~~~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~vL~i~l~Rf~~~~~~~~~~ 160 (261)
+.+.++|+.|+|++....+|+++|+.++.++.+.+.+ |.. ...+.++..|.++|++|+|||+||.++. +...
T Consensus 76 s~~~E~F~~L~l~i~~~~~L~e~L~~~~~ee~l~~~~---~~~---~~~~~~~~~i~~lP~vL~i~LkRF~~~~--~~~~ 147 (228)
T cd02665 76 FCNCETFGQYPLQVNGYGNLHECLEAAMFEGEVELLP---SDH---SVKSGQERWFTELPPVLTFELSRFEFNQ--GRPE 147 (228)
T ss_pred ccccCccEEEEEEECCCCCHHHHHHHhhhhccccccc---ccc---hhhhhhhhhhhhCChhhEEEeEeeEEcC--CccE
Confidence 8999999999999999999999999999988887642 222 2234566779999999999999999986 4678
Q ss_pred ecceEEeeCceeeCCCCCCCCCceeEEcEEEeeeecCCCCeeEEEEEec--CCcEEEeeCceeeEeChHHHHh-hhcCCC
Q 024898 161 KLSYRVVFPLELKLSNTAEDADIEYSLFAVVVHVGSGPNHGHYVSLVKS--HNHWLFFDDENVEMIDESAVQT-FFGSAQ 237 (261)
Q Consensus 161 K~~~~v~~p~~l~l~~~~~~~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~--~~~W~~~nD~~V~~~~~~~v~~-~~~~~~ 237 (261)
|+..+|.||..| ....|+|+|||+|.|. +++|||++|+|. +++||+|||+.|+++++++|.. .+||++
T Consensus 148 Ki~~~v~FP~~l--------~~~~Y~L~aVi~H~G~-~~~GHY~~~i~~~~~~~W~~fdD~~V~~~~~~~v~~~~fGg~~ 218 (228)
T cd02665 148 KIHDKLEFPQII--------QQVPYELHAVLVHEGQ-ANAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVERDSFGGGR 218 (228)
T ss_pred ECCEEEEeeCcc--------CCceeEEEEEEEecCC-CCCCEEEEEEEcCCCCEEEEEECCeeEEcCHHHHhhhccCCCC
Confidence 999999999987 3578999999999998 899999999986 7899999999999999999975 457765
Q ss_pred CCCCCCCceEEEEEE
Q 024898 238 EYSSNTDHGYILFYE 252 (261)
Q Consensus 238 ~~~~~~~~~yil~Y~ 252 (261)
+..||||||.
T Consensus 219 -----~~~AYiLfYv 228 (228)
T cd02665 219 -----NPSAYCLMYI 228 (228)
T ss_pred -----CCceEEEEEC
Confidence 7899999994
No 13
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.7e-45 Score=313.02 Aligned_cols=195 Identities=33% Similarity=0.532 Sum_probs=173.4
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCCCCCc
Q 024898 1 MHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETV 80 (261)
Q Consensus 1 ~QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~C~~~ 80 (261)
.||||+|||.+|||.|++++... ....+.++|+|.+...++|..|+..
T Consensus 99 ~QqDa~Efl~~ll~~l~~~~~~~--------------------------------~~~~~~~~f~~~~~~~i~C~~C~~~ 146 (311)
T cd02658 99 RQQDALEFLLHLIDKLDRESFKN--------------------------------LGLNPNDLFKFMIEDRLECLSCKKV 146 (311)
T ss_pred ccccHHHHHHHHHHHHHHhhccc--------------------------------ccCCchhheEEEeeEEEEcCCCCCE
Confidence 49999999999999999987521 0123778999999999999999998
Q ss_pred cccccceEEEEeecCCC--------------CCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCCeEEEE
Q 024898 81 TARDETFFDLSLDIEQN--------------SSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIH 146 (261)
Q Consensus 81 ~~~~~~f~~l~l~i~~~--------------~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~vL~i~ 146 (261)
+...++|..|+|+++.. .+|+++|+.++.+|.++ +.|++|+..+.+.++..|.++|++|+||
T Consensus 147 s~~~e~~~~lsL~l~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~i~----~~C~~C~~~~~a~k~~~i~~lP~vLii~ 222 (311)
T cd02658 147 KYTSELSEILSLPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIE----DFCSTCKEKTTATKTTGFKTFPDYLVIN 222 (311)
T ss_pred EEeecceeEEeeecccccccccccccccCCCCCHHHHHHHHcCccccc----ccccCCCCcccEEEEEEeecCCceEEEE
Confidence 88899999999998754 38999999999999997 6899999999999999999999999999
Q ss_pred EeeeeeecccceeEecceEEeeCceeeCCCCCCCCCceeEEcEEEeeeecCCCCeeEEEEEecC----CcEEEeeCceee
Q 024898 147 LKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSH----NHWLFFDDENVE 222 (261)
Q Consensus 147 l~Rf~~~~~~~~~~K~~~~v~~p~~l~l~~~~~~~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~~----~~W~~~nD~~V~ 222 (261)
|+||.++.. ....|+...|.||..| ....|+|+|||+|.|.+.++|||++++|.. ++||+|||+.|+
T Consensus 223 LkRF~~~~~-~~~~Ki~~~v~~p~~l--------~~~~Y~L~~vI~H~G~~~~~GHY~~~vk~~~~~~~~W~~fnD~~V~ 293 (311)
T cd02658 223 MKRFQLLEN-WVPKKLDVPIDVPEEL--------GPGKYELIAFISHKGTSVHSGHYVAHIKKEIDGEGKWVLFNDEKVV 293 (311)
T ss_pred eEEEEecCC-CceEeeccccccCCcC--------CCCcEEEEEEEEccCCCCCCcceEEEEeCCCCCCCCEEEecCceeE
Confidence 999999632 3468999999999877 457899999999999878999999999996 999999999999
Q ss_pred EeChHHHHhhhcCCCCCCCCCCceEEEEEE
Q 024898 223 MIDESAVQTFFGSAQEYSSNTDHGYILFYE 252 (261)
Q Consensus 223 ~~~~~~v~~~~~~~~~~~~~~~~~yil~Y~ 252 (261)
+++..++. ..+||||||+
T Consensus 294 ~~~~~~~~------------~~~~YilfY~ 311 (311)
T cd02658 294 ASQDPPEM------------KKLGYIYFYQ 311 (311)
T ss_pred ECCccccc------------CCcceEEEEC
Confidence 99998886 6899999996
No 14
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.3e-45 Score=298.40 Aligned_cols=180 Identities=37% Similarity=0.663 Sum_probs=164.3
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCCCCCc
Q 024898 1 MHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETV 80 (261)
Q Consensus 1 ~QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~C~~~ 80 (261)
.||||+|||..||+.|+. .+.++|.|++...++|..|+..
T Consensus 33 ~QqDa~EFl~~ll~~l~~----------------------------------------~i~~~F~g~~~~~i~C~~C~~~ 72 (240)
T cd02662 33 EQQDAHELFQVLLETLEQ----------------------------------------LLKFPFDGLLASRIVCLQCGES 72 (240)
T ss_pred hhcCHHHHHHHHHHHHHH----------------------------------------hccCccccEEEEEEEeCCCCCc
Confidence 499999999999999982 1667899999999999999998
Q ss_pred cc-cccceEEEEeecCCC-----CCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCCeEEEEEeeeeeec
Q 024898 81 TA-RDETFFDLSLDIEQN-----SSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIE 154 (261)
Q Consensus 81 ~~-~~~~f~~l~l~i~~~-----~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~vL~i~l~Rf~~~~ 154 (261)
+. +.++|..|+|++|.. .+|+++|+.++.+|.+++ +.|++| +..|.++|++|+|||+||.++.
T Consensus 73 s~~~~e~f~~LsL~ip~~~~~~~~sl~~~L~~~~~~E~l~~---~~C~~C--------~~~i~~lP~vLii~LkRF~~~~ 141 (240)
T cd02662 73 SKVRYESFTMLSLPVPNQSSGSGTTLEHCLDDFLSTEIIDD---YKCDRC--------QTVIVRLPQILCIHLSRSVFDG 141 (240)
T ss_pred cCcceeeeeeeEecccccCCCCCCCHHHHHHHhcCcccccC---cCCCCC--------eEEeecCCcEEEEEEEEEEEcC
Confidence 65 589999999999875 589999999999999986 899999 6789999999999999999988
Q ss_pred ccceeEecceEEeeCceeeCCCCCCCCCceeEEcEEEeeeecCCCCeeEEEEEecC----------------------Cc
Q 024898 155 QLGRYKKLSYRVVFPLELKLSNTAEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSH----------------------NH 212 (261)
Q Consensus 155 ~~~~~~K~~~~v~~p~~l~l~~~~~~~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~~----------------------~~ 212 (261)
. +...|+..+|.||..| +...|+|+|||+|.|. .++|||+||+|.. ++
T Consensus 142 ~-~~~~K~~~~v~fp~~l--------~~~~Y~L~avi~H~G~-~~~GHY~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (240)
T cd02662 142 R-GTSTKNSCKVSFPERL--------PKVLYRLRAVVVHYGS-HSSGHYVCYRRKPLFSKDKEPGSFVRMREGPSSTSHP 211 (240)
T ss_pred C-CceeeeccEEECCCcc--------CCceEEEEEEEEEecc-CCCceEEEEEeCCCcccccccccccccccccCccCCC
Confidence 6 6789999999999988 5789999999999999 5999999999986 89
Q ss_pred EEEeeCceeeEeChHHHHhhhcCCCCCCCCCCceEEEEEE
Q 024898 213 WLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYE 252 (261)
Q Consensus 213 W~~~nD~~V~~~~~~~v~~~~~~~~~~~~~~~~~yil~Y~ 252 (261)
||+|||+.|+++++++|+. ..+||||||+
T Consensus 212 W~~fnD~~V~~v~~~~v~~-----------~~~aY~LfYe 240 (240)
T cd02662 212 WWRISDTTVKEVSESEVLE-----------QKSAYMLFYE 240 (240)
T ss_pred EEEEechheEEeCHHHHhh-----------CCCEEEEEeC
Confidence 9999999999999999941 6799999996
No 15
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-46 Score=296.95 Aligned_cols=240 Identities=28% Similarity=0.410 Sum_probs=195.3
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCcCCCCC----CCCCCCCccCCCcccceeeeeeEEEEEEEEeCC
Q 024898 1 MHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGP----TNGLANGVRKEPLVTWVHKNFQGILTNETRCLR 76 (261)
Q Consensus 1 ~QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~ 76 (261)
||||++||+.+|||.||++++....+....+...+.+...++. .....|........|+|-++|.|+..++.+|..
T Consensus 161 mQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L~sn~S~v~~~f~gq~~srlqC~~ 240 (415)
T COG5533 161 MQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLRSNKSLVAKTFFGQDKSRLQCEA 240 (415)
T ss_pred chhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhhccchHHHHHHHhhhhhhhhhhhh
Confidence 7999999999999999999998766655444443333333322 223456677778889999999999999999999
Q ss_pred CCCccccccceEEEEeecCCCC--CHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCCeEEEEEeeeeeec
Q 024898 77 CETVTARDETFFDLSLDIEQNS--SITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIE 154 (261)
Q Consensus 77 C~~~~~~~~~f~~l~l~i~~~~--sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~vL~i~l~Rf~~~~ 154 (261)
|+++++...+|..|.++++... .|++||+.|.++|.+.+.++|.|++|+++..+.|+..|.++|.+|||+|+||....
T Consensus 241 C~~TStT~a~fs~l~vp~~~v~~~~l~eC~~~f~~~e~L~g~d~W~CpkC~~k~ss~K~~~I~~lP~~LII~i~RF~i~V 320 (415)
T COG5533 241 CNYTSTTIAMFSTLLVPPYEVVQLGLQECIDRFYEEEKLEGKDAWRCPKCGRKESSRKRMEILVLPDVLIIHISRFHISV 320 (415)
T ss_pred cCCceeEEeccceeeeccchheeecHHHHHHHhhhHHhhcCcccccCchhcccccchheEEEEecCceEEEEeeeeeEEe
Confidence 9999999999999999998753 59999999999999999999999999999999999999999999999999998543
Q ss_pred ccceeEecce--------EEeeCceeeCCCCCCCCCceeEEcEEEeeeecCCCCeeEEEEEecCCcEEEeeCceeeEeCh
Q 024898 155 QLGRYKKLSY--------RVVFPLELKLSNTAEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDE 226 (261)
Q Consensus 155 ~~~~~~K~~~--------~v~~p~~l~l~~~~~~~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~~~~W~~~nD~~V~~~~~ 226 (261)
+ -.+|++. +++.-..+++.....-.+.+|+|.|||||.|+ .++|||+++|+.++.|+.|||+.|++++.
T Consensus 321 ~--~~~kiD~p~gw~~~~~~e~~v~~~f~~~~~~~P~~Y~L~gv~Ch~G~-L~gGHY~s~v~~~~~W~~~dDs~vr~~~~ 397 (415)
T COG5533 321 M--GRKKIDTPQGWKNTASVEVNVTLLFNNGIGYIPRKYSLLGVVCHNGT-LNGGHYFSEVKRSGTWNVYDDSQVRKGSR 397 (415)
T ss_pred e--cccccCCCcchhccCCceecccccccCCCCCCccceeEEEEEeecce-ecCceeEEeeeecCceEEechhheeeccc
Confidence 2 1233332 33333333444444556799999999999999 99999999999999999999999999875
Q ss_pred HHHHhhhcCCCCCCCCCCceEEEEEEEe
Q 024898 227 SAVQTFFGSAQEYSSNTDHGYILFYESL 254 (261)
Q Consensus 227 ~~v~~~~~~~~~~~~~~~~~yil~Y~r~ 254 (261)
..-. +...+|||||+|.
T Consensus 398 ~t~~-----------~~pSsYilFY~r~ 414 (415)
T COG5533 398 TTSG-----------SHPSSYILFYTRS 414 (415)
T ss_pred eecc-----------cCCcceEEEEEec
Confidence 4332 1557899999996
No 16
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2e-44 Score=293.89 Aligned_cols=209 Identities=26% Similarity=0.425 Sum_probs=162.7
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCCCCCc
Q 024898 1 MHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETV 80 (261)
Q Consensus 1 ~QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~C~~~ 80 (261)
.||||||||.+|||.|++++............ ........++|+|++.+.++|..|+.+
T Consensus 32 ~QQDAhEFL~~LLd~l~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~F~~~l~s~i~C~~C~~~ 90 (245)
T cd02673 32 DQQDAHEFLLTLLEAIDDIMQVNRTNVPPSNI---------------------EIKRLNPLEAFKYTIESSYVCIGCSFE 90 (245)
T ss_pred chhhHHHHHHHHHHHHHHHHHhhcccCCCCcc---------------------cccccCHhHheeeEEEeEEEecCCCCe
Confidence 49999999999999999987553221110000 000112346799999999999999999
Q ss_pred cccccceEEEEeecCCC--CCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCCeEEEEEeeeeeecccce
Q 024898 81 TARDETFFDLSLDIEQN--SSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGR 158 (261)
Q Consensus 81 ~~~~~~f~~l~l~i~~~--~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~vL~i~l~Rf~~~~~~~~ 158 (261)
+.+.++|+.|+|+++.. .++++++..+...+.++ +.|++|+.. .+.++..|.++|++|+|||+||.+......
T Consensus 91 s~~~e~~~~L~L~i~~~~~~~le~l~~~~~~~~~~e----~~C~~C~~~-~a~k~~~i~~~P~vL~i~lkRf~~~~~~~~ 165 (245)
T cd02673 91 ENVSDVGNFLDVSMIDNKLDIDELLISNFKTWSPIE----KDCSSCKCE-SAISSERIMTFPECLSINLKRYKLRIATSD 165 (245)
T ss_pred eeeccccceeccccccCCcchHHHHHHHhhcccccC----ccCCCCCCc-cceeechhhhCChhhEEeeEeeeecccccc
Confidence 99999999999999874 56778887777777765 899999986 677888899999999999999976543221
Q ss_pred eEecceEEeeCceeeCCCCCCCCCceeEEcEEEeeeecCCCCeeEEEEEec---CCcEEEeeCceeeEeChHHHHhhhcC
Q 024898 159 YKKLSYRVVFPLELKLSNTAEDADIEYSLFAVVVHVGSGPNHGHYVSLVKS---HNHWLFFDDENVEMIDESAVQTFFGS 235 (261)
Q Consensus 159 ~~K~~~~v~~p~~l~l~~~~~~~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~---~~~W~~~nD~~V~~~~~~~v~~~~~~ 235 (261)
..|.+ .+++.++.. +...|+|+|||+|.|.+.++|||+||+|. +++||+|||+.|+++++++|+...
T Consensus 166 ~~~~~-------~~~~~~~~~-~~~~Y~L~~VV~H~G~~~~~GHY~a~vk~~~~~~~Wy~fnD~~V~~v~~~~v~~~~-- 235 (245)
T cd02673 166 YLKKN-------EEIMKKYCG-TDAKYSLVAVICHLGESPYDGHYIAYTKELYNGSSWLYCSDDEIRPVSKNDVSTNA-- 235 (245)
T ss_pred ccccc-------ccccccccC-CCceEEEEEEEEECCCCCCCceEEEEEEcCCCCCeEEEeeCceeeEcCHHHHhhcc--
Confidence 12221 244555554 46789999999999987899999999997 689999999999999999997311
Q ss_pred CCCCCCCCCceEEEEEE
Q 024898 236 AQEYSSNTDHGYILFYE 252 (261)
Q Consensus 236 ~~~~~~~~~~~yil~Y~ 252 (261)
..+||||||+
T Consensus 236 -------~~~aYiLFY~ 245 (245)
T cd02673 236 -------RSSGYLIFYD 245 (245)
T ss_pred -------CCceEEEEEC
Confidence 4699999995
No 17
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.3e-43 Score=311.32 Aligned_cols=206 Identities=26% Similarity=0.401 Sum_probs=168.3
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCCCC--
Q 024898 1 MHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCE-- 78 (261)
Q Consensus 1 ~QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~C~-- 78 (261)
.||||+|||.+|||.||++++... ....++|+++|+|++...++|..|.
T Consensus 206 ~QqDA~EFl~~LLd~L~~~l~~~~-----------------------------~~~~~ii~~~F~G~l~~~~~c~~~~~~ 256 (440)
T cd02669 206 EQSDPVEFLSWLLNTLHKDLGGSK-----------------------------KPNSSIIHDCFQGKVQIETQKIKPHAE 256 (440)
T ss_pred ccCCHHHHHHHHHHHHHHHhccCC-----------------------------CCCCCcceeccCceEEEEEEeeccccc
Confidence 599999999999999999886421 1235789999999999999887553
Q ss_pred -------------CccccccceEEEEeecCCCCCHHH-----HHHhccCccccCCCCcccccccCCceeEEEEEEEeecC
Q 024898 79 -------------TVTARDETFFDLSLDIEQNSSITS-----CLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSP 140 (261)
Q Consensus 79 -------------~~~~~~~~f~~l~l~i~~~~sl~~-----~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP 140 (261)
.+++..++|+.|+|++|....+.+ ++......+.++ +|.|+.|.....+.++..|.+||
T Consensus 257 ~~~~~~~~~~c~~~~s~~~~pF~~LsLdip~~~~~~~~~~~~~l~~~~l~e~L~---ky~~~~c~~~~~a~k~~~I~~LP 333 (440)
T cd02669 257 EEGSKDKFFKDSRVKKTSVSPFLLLTLDLPPPPLFKDGNEENIIPQVPLKQLLK---KYDGKTETELKDSLKRYLISRLP 333 (440)
T ss_pred ccccccccccccccceeeeccceEEEecCCCCccccccccccccCcccHHHHHH---hcCCccceecccceEEEEEeeCC
Confidence 245678899999999987532221 111112222222 26788888888889999999999
Q ss_pred CeEEEEEeeeeeecccceeEecceEEeeCce-eeCCCCCC------CCCceeEEcEEEeeeecCCCCeeEEEEEec--CC
Q 024898 141 HTLVIHLKRFKYIEQLGRYKKLSYRVVFPLE-LKLSNTAE------DADIEYSLFAVVVHVGSGPNHGHYVSLVKS--HN 211 (261)
Q Consensus 141 ~vL~i~l~Rf~~~~~~~~~~K~~~~v~~p~~-l~l~~~~~------~~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~--~~ 211 (261)
++|+|||+||.++. +...|+...|+||.. |||.+++. .....|+|+|||+|.|..+++|||++|+|+ ++
T Consensus 334 ~vLiihLKRF~~~~--~~~~K~~t~V~FP~~~LDm~~y~~~~~~~~~~~~~Y~L~avI~H~G~~~~sGHY~a~v~~~~~~ 411 (440)
T cd02669 334 KYLIFHIKRFSKNN--FFKEKNPTIVNFPIKNLDLSDYVHFDKPSLNLSTKYNLVANIVHEGTPQEDGTWRVQLRHKSTN 411 (440)
T ss_pred cEEEEEEecccCCC--CccccCCCEEECCCCccchhhhhCccccccCCCceEEEEEEEEEeccCCCCeeEEEEEEcCCCC
Confidence 99999999999875 356899999999997 89999874 346899999999999994499999999997 78
Q ss_pred cEEEeeCceeeEeChHHHHhhhcCCCCCCCCCCceEEEEEE
Q 024898 212 HWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYE 252 (261)
Q Consensus 212 ~W~~~nD~~V~~~~~~~v~~~~~~~~~~~~~~~~~yil~Y~ 252 (261)
+||+|||+.|+++++++|+ ..+||||||+
T Consensus 412 ~W~~fdD~~V~~v~~~~v~------------~~eaYll~Y~ 440 (440)
T cd02669 412 KWFEIQDLNVKEVLPQLIF------------LSESYIQIWE 440 (440)
T ss_pred eEEEEECCeeeEcCHHHhc------------cCCceEEEeC
Confidence 9999999999999999998 7899999996
No 18
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-45 Score=322.63 Aligned_cols=225 Identities=31% Similarity=0.522 Sum_probs=203.7
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCCCCCcc
Q 024898 2 HQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETVT 81 (261)
Q Consensus 2 QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~C~~~~ 81 (261)
||||-||+..|||.+.+.++..+. ..++...|+|.....-+|..|-+..
T Consensus 182 qhDA~eFf~sLld~~De~LKklg~-------------------------------p~lf~n~f~G~ysdqKIC~~CpHRY 230 (944)
T KOG1866|consen 182 QHDALEFFNSLLDSLDEALKKLGH-------------------------------PQLFSNTFGGSYSDQKICQGCPHRY 230 (944)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhCC-------------------------------cHHHHHHhcCccchhhhhccCCccc
Confidence 899999999999999999987533 2347888999999999999999999
Q ss_pred ccccceEEEEeecCCCCCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCCeEEEEEeeeeeecccceeEe
Q 024898 82 ARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKK 161 (261)
Q Consensus 82 ~~~~~f~~l~l~i~~~~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~vL~i~l~Rf~~~~~~~~~~K 161 (261)
...|.|..|+|.+. ..+|+++|++|.+.+.++|.|+|.|++|.++....++..|++||++|+|||+||.||...+..+|
T Consensus 231 ~~eE~F~~l~l~i~-~~nLeesLeqfv~gevlEG~nAYhCeKCdeK~~TvkRt~ik~LPsvl~IqLkRF~yD~e~~~~iK 309 (944)
T KOG1866|consen 231 ECEESFTTLNLDIR-HQNLEESLEQFVKGEVLEGANAYHCEKCDEKVDTVKRTCIKKLPSVLAIQLKRFDYDWERECAIK 309 (944)
T ss_pred Cccccceeeeeecc-cchHHHHHHHHHHHHHhcCcchhhhhhhhhhhHhHHHHHHhhCChhheehhhhccchhhhccccc
Confidence 99999999999999 77999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEeeCceeeCCCCCC--------------------CCCceeEEcEEEeeeecCCCCeeEEEEEec-----CCcEEEe
Q 024898 162 LSYRVVFPLELKLSNTAE--------------------DADIEYSLFAVVVHVGSGPNHGHYVSLVKS-----HNHWLFF 216 (261)
Q Consensus 162 ~~~~v~~p~~l~l~~~~~--------------------~~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~-----~~~W~~~ 216 (261)
.+.-++||..|||.+|.. .++.+|+|+||++|.|. +..|||++|++. +++||+|
T Consensus 310 ~n~~frFP~~ldMePYtvsg~a~~e~~~~~~g~~~e~s~~t~~YeLvGVlvHSGq-AsaGHYySfIk~rr~~~~~kWykf 388 (944)
T KOG1866|consen 310 FNDYFRFPRELDMEPYTVSGVAKLEGENVESGQQLEQSAGTTKYELVGVLVHSGQ-ASAGHYYSFIKQRRGEDGNKWYKF 388 (944)
T ss_pred cchhcccchhhcCCceeehhhhhhccccCCcCcccccccCcceeEEEEEEEeccc-ccCcchhhhhhhhccCCCCceEec
Confidence 999999999999999862 23678999999999999 999999999986 6899999
Q ss_pred eCceeeEeChHHHHh-hhcCCC-------CCCCCCCceEEEEEEEeCCCCC
Q 024898 217 DDENVEMIDESAVQT-FFGSAQ-------EYSSNTDHGYILFYESLGAGSN 259 (261)
Q Consensus 217 nD~~V~~~~~~~v~~-~~~~~~-------~~~~~~~~~yil~Y~r~~~~~~ 259 (261)
||-.|++++..++.+ .+||.= .+-++|.+||||||+|++..+.
T Consensus 389 nD~~Vte~~~n~me~~cfGGey~q~~~~~~~rrR~WNAYmlFYer~~d~p~ 439 (944)
T KOG1866|consen 389 NDGDVTECKMNEMENECFGGEYMQMMKRMSYRRRWWNAYMLFYERMDDIPT 439 (944)
T ss_pred cCccccccchhhHHHHhhcchhhhcccccchHHHhhhhHHHHHHHhcCCCc
Confidence 999999999998876 455432 1236899999999999988754
No 19
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-43 Score=305.26 Aligned_cols=240 Identities=29% Similarity=0.540 Sum_probs=205.1
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhhCCCC-CCCCCCCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCCCCC
Q 024898 1 MHQDAHEFLNFLLNELVDILEKEEAAKSDP-ESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCET 79 (261)
Q Consensus 1 ~QqDa~Efl~~ll~~L~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~C~~ 79 (261)
+|||++||+.+|||.||+++++.-.++... ++..+.+.....-.....|........|+|.+||.|-..++..|+.|+.
T Consensus 354 ~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiItdLFqgmyKSTL~Cp~C~~ 433 (823)
T COG5560 354 DQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQGMYKSTLTCPGCGS 433 (823)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhceeeccCcCc
Confidence 699999999999999999999876655422 2222222222222223345566667889999999999999999999999
Q ss_pred ccccccceEEEEeec-----------------------------------------------------------------
Q 024898 80 VTARDETFFDLSLDI----------------------------------------------------------------- 94 (261)
Q Consensus 80 ~~~~~~~f~~l~l~i----------------------------------------------------------------- 94 (261)
++..++||..|+||+
T Consensus 434 vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~pl~iel~~sSt~~~lk~lv~~~~gk~gc~ei~v~~iy~g~~y~~l 513 (823)
T COG5560 434 VSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKIELDASSTIRGLKKLVDAEYGKLGCFEIKVMCIYYGGNYNML 513 (823)
T ss_pred eeeeecchhhccccCchhhcccccEEEECCCCCCCceEEEEeccchHHHHHHHHHHHhccCCccceeEEEEEeccchhhc
Confidence 999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q 024898 95 -------------------------------------------------------------------------------- 94 (261)
Q Consensus 95 -------------------------------------------------------------------------------- 94 (261)
T Consensus 514 ~~~dk~ll~~I~~~d~vylYe~~~ngi~vpvvh~~~~~gYks~rlFg~pflqlnv~~~~~i~~kLvkE~~ell~~v~~k~ 593 (823)
T COG5560 514 EPADKVLLQDIPQTDFVYLYETNDNGIEVPVVHLRIEKGYKSKRLFGDPFLQLNVLIKASIYDKLVKEFEELLVLVEMKK 593 (823)
T ss_pred chhhHHHHhhcCccceEEEeecCCCCeEEEEEeccccccccchhhhCCcceEEEeecchhhHHHHHHHHHHHHHHHhhcc
Confidence
Q ss_pred ------------------------------------------------------------------------------CC
Q 024898 95 ------------------------------------------------------------------------------EQ 96 (261)
Q Consensus 95 ------------------------------------------------------------------------------~~ 96 (261)
.+
T Consensus 594 tdvd~~~~q~~l~r~es~p~~wl~l~teid~kree~veeE~~~n~nd~vvi~cew~ek~y~~lFsy~~lw~~~ei~~~~r 673 (823)
T COG5560 594 TDVDLVSEQVRLLREESSPSSWLKLETEIDTKREEQVEEEGQMNFNDAVVISCEWEEKRYLSLFSYDPLWTIREIGAAER 673 (823)
T ss_pred hhhhhhhhhccchhcccCcchhhhhhhhccchhhhhhhhhhccCCCcceEEeeeccccchhhhhcCCccchhHHhhhccC
Confidence 12
Q ss_pred CCCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCCeEEEEEeeeeeecccceeEecceEEeeCce-eeCC
Q 024898 97 NSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLE-LKLS 175 (261)
Q Consensus 97 ~~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~vL~i~l~Rf~~~~~~~~~~K~~~~v~~p~~-l~l~ 175 (261)
..||++||+.|.++|.+...+.|+|+.|+....++|+..|+++|.||+|||+||+.... ...|+++-|+||.. |||.
T Consensus 674 tiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLiihLkRFss~rs--frdKiddlVeyPiddldLs 751 (823)
T COG5560 674 TITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRS--FRDKIDDLVEYPIDDLDLS 751 (823)
T ss_pred CCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChheeeehhhhhhccc--chhhhhhhhcccccccccc
Confidence 36899999999999999999999999999999999999999999999999999997765 56899999999987 8888
Q ss_pred CCC---CCCCceeEEcEEEeeeecCCCCeeEEEEEec--CCcEEEeeCceeeEeChHHHHhhhcCCCCCCCCCCceEEEE
Q 024898 176 NTA---EDADIEYSLFAVVVHVGSGPNHGHYVSLVKS--HNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILF 250 (261)
Q Consensus 176 ~~~---~~~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~--~~~W~~~nD~~V~~~~~~~v~~~~~~~~~~~~~~~~~yil~ 250 (261)
.+. .++...|.|+||=.|+|- ..+|||+||+|+ +++||+|||++|+++.+++.. ...||+||
T Consensus 752 ~~~~~~~~p~liydlyavDNHygg-lsgGHYtAyarn~~n~~wy~fdDsritevdped~v------------tssaYvLF 818 (823)
T COG5560 752 GVEYMVDDPRLIYDLYAVDNHYGG-LSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSV------------TSSAYVLF 818 (823)
T ss_pred ceEEeecCcceEEEeeeccccccc-cCCcceeeeeecccCCceEEecCccccccCccccc------------cceeEEEE
Confidence 764 345689999999999997 999999999999 889999999999999998876 67899999
Q ss_pred EEEeC
Q 024898 251 YESLG 255 (261)
Q Consensus 251 Y~r~~ 255 (261)
|+|+.
T Consensus 819 yrrk~ 823 (823)
T COG5560 819 YRRKS 823 (823)
T ss_pred EEecC
Confidence 99974
No 20
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5e-40 Score=269.78 Aligned_cols=217 Identities=41% Similarity=0.668 Sum_probs=184.6
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCCCCCcc
Q 024898 2 HQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETVT 81 (261)
Q Consensus 2 QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~C~~~~ 81 (261)
||||+|||..+|+.|+.++...... ........+++.++|.+.+...+.|..|+..+
T Consensus 22 q~Da~E~l~~ll~~l~~~~~~~~~~-----------------------~~~~~~~~~~i~~~F~~~~~~~~~c~~c~~~~ 78 (255)
T cd02257 22 QQDAHEFLLFLLDKLHEELKKSSKR-----------------------TSDSSSLKSLIHDLFGGKLESTIVCLECGHES 78 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccc-----------------------ccccccCCchhhhhcccEEeeEEECCCCCCCc
Confidence 9999999999999999998764322 01111234679999999999999999999887
Q ss_pred ccccceEEEEeecCCC----CCHHHHHHhccCccccCCCCcccccccC--CceeEEEEEEEeecCCeEEEEEeeeeeecc
Q 024898 82 ARDETFFDLSLDIEQN----SSITSCLKNFSSTETLNAEDKFFCDKCC--SLQEAQKRMKIKKSPHTLVIHLKRFKYIEQ 155 (261)
Q Consensus 82 ~~~~~f~~l~l~i~~~----~sl~~~l~~~~~~e~~~~~~~~~C~~C~--~~~~~~~~~~i~~lP~vL~i~l~Rf~~~~~ 155 (261)
.....+..+.|+++.. .+|+++|+.++..+.+.+ ..|..|+ ....+.++..+.++|++|+|+++||.++..
T Consensus 79 ~~~~~~~~l~l~~~~~~~~~~~l~~~l~~~~~~e~~~~---~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~ 155 (255)
T cd02257 79 VSTEPELFLSLPLPVKGLPQVSLEDCLEKFFKEEILEG---DNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNED 155 (255)
T ss_pred cCcccceeEEeeccCCCCCCCcHHHHHHHhhhhhccCC---CCcccCCCCcccceeEEEecccCCceeEEEeeceeeccc
Confidence 7777777788877754 799999999999999887 7899998 688889999999999999999999998763
Q ss_pred cceeEecceEEeeCceeeCCCCCC---------CCCceeEEcEEEeeeecCCCCeeEEEEEecC--CcEEEeeCceeeEe
Q 024898 156 LGRYKKLSYRVVFPLELKLSNTAE---------DADIEYSLFAVVVHVGSGPNHGHYVSLVKSH--NHWLFFDDENVEMI 224 (261)
Q Consensus 156 ~~~~~K~~~~v~~p~~l~l~~~~~---------~~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~~--~~W~~~nD~~V~~~ 224 (261)
+...|+..+|.+|..|++..+.. .....|+|+|||+|.|.+.++|||+||+|.. ++||+|||..|+++
T Consensus 156 -~~~~k~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v 234 (255)
T cd02257 156 -GTKEKLNTKVSFPLELDLSPYLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEV 234 (255)
T ss_pred -cccccCCCeEeCCCcccCccccccccccccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCCCCCceEEEeccccEEc
Confidence 45689999999999999987754 3578999999999999977999999999994 99999999999999
Q ss_pred ChHHHHhhhcCCCCCCCCCCceEEEEEE
Q 024898 225 DESAVQTFFGSAQEYSSNTDHGYILFYE 252 (261)
Q Consensus 225 ~~~~v~~~~~~~~~~~~~~~~~yil~Y~ 252 (261)
+.+++....+. +.+||+|||+
T Consensus 235 ~~~~~~~~~~~-------~~~~yll~Y~ 255 (255)
T cd02257 235 SEEEVLEFGSL-------SSSAYILFYE 255 (255)
T ss_pred CHHHhhhccCC-------CCceEEEEEC
Confidence 99999643222 7899999996
No 21
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-42 Score=297.28 Aligned_cols=227 Identities=26% Similarity=0.563 Sum_probs=207.4
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCCCCCcc
Q 024898 2 HQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETVT 81 (261)
Q Consensus 2 QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~C~~~~ 81 (261)
|+|.+|+-..++|.|+-..+..+.. .+|.+|+.|.+..-+.|..|+.++
T Consensus 143 qhdiqelcr~mfdalehk~k~t~~~-------------------------------~li~~ly~g~m~d~v~cl~c~~e~ 191 (1203)
T KOG4598|consen 143 QHDVQELCRLMFDALEHKWKGTEHE-------------------------------KLIQDLYRGTMEDFVACLKCGRES 191 (1203)
T ss_pred hhhHHHHHHHHHHHHHhhhcCchHH-------------------------------HHHHHHhcchHHHHHHHHHcCccc
Confidence 8999999999999998876654332 359999999999999999999999
Q ss_pred ccccceEEEEeecCCC------CCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCCeEEEEEeeeeeecc
Q 024898 82 ARDETFFDLSLDIEQN------SSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQ 155 (261)
Q Consensus 82 ~~~~~f~~l~l~i~~~------~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~vL~i~l~Rf~~~~~ 155 (261)
++.+.|..|.|++.+- .+++++|..|..+|.++|.|+|-|++|+++..+.+-..|+.+|-+|+|||+||.++-+
T Consensus 192 ~~~d~fld~pl~v~pfg~~~ay~sieeal~afvqpe~ldg~nqy~ce~ck~k~dahkgl~~~~fpy~lt~~lkrfdfdy~ 271 (1203)
T KOG4598|consen 192 VKTDYFLDLPLAVKPFGAIHAYKSVEEALTAFVQPELLDGSNQYMCENCKSKQDAHKGLRITQFPYLLTIQLKRFDFDYN 271 (1203)
T ss_pred cccceeecccccccCCcchhhhhhHHHHHHHhcChhhcCCccHHHHhhhhhhhhhhcCceeeccceeeEEeeecccccch
Confidence 9999999999999774 5899999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEecceEEeeCceeeCCCCCC--------------------------------------------------------
Q 024898 156 LGRYKKLSYRVVFPLELKLSNTAE-------------------------------------------------------- 179 (261)
Q Consensus 156 ~~~~~K~~~~v~~p~~l~l~~~~~-------------------------------------------------------- 179 (261)
+.-.+|++++++||..|+|..|..
T Consensus 272 tmhriklnd~~tfp~~l~ln~~in~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~n~~~g~ 351 (1203)
T KOG4598|consen 272 TMHRIKLNDKMTFPDVLDLNDYVNKEKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKRCTPGVQSPNRYQGSENVCVGQ 351 (1203)
T ss_pred heeeeeecccccCcccccHHHhhhhccCCcchhHhhhcccccccccccccccCCCCcccCcccccCcccccCccccccCC
Confidence 999999999999999999987652
Q ss_pred -------------CCCceeEEcEEEeeeecCCCCeeEEEEEec--CCcEEEeeCceeeEeChHHHHhhhcCCC-CCCCCC
Q 024898 180 -------------DADIEYSLFAVVVHVGSGPNHGHYVSLVKS--HNHWLFFDDENVEMIDESAVQTFFGSAQ-EYSSNT 243 (261)
Q Consensus 180 -------------~~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~--~~~W~~~nD~~V~~~~~~~v~~~~~~~~-~~~~~~ 243 (261)
.+...|+|.+|.+|.|. +.+|||+||+|+ +++||+|||.+|+.++.++|.+.+||.. .+..+.
T Consensus 352 ~~~~~~~~~~~~~sg~~~yelf~imihsg~-a~gghy~ayik~~d~~~w~~fnd~~v~~~t~~~i~~sfgg~~~~~~~s~ 430 (1203)
T KOG4598|consen 352 PIDHAAVDDIVKTSGDNVYELFSVMVHSGN-AAGGHYFAYIKNLDQDRWYVFNDTRVDFATPLEIEKSFGGHPSGWNQSN 430 (1203)
T ss_pred cCchhhhhhHhhcCCccHHHhhhhheecCC-CCCceeeeeecccCcCceEEecCccccccCHHHHHHhhCCCCCCccccC
Confidence 24678999999999998 999999999998 8999999999999999999999888876 445667
Q ss_pred CceEEEEEEEeCCCCCC
Q 024898 244 DHGYILFYESLGAGSNK 260 (261)
Q Consensus 244 ~~~yil~Y~r~~~~~~~ 260 (261)
.+||||+|+|++...|+
T Consensus 431 tnaymlmyr~id~krn~ 447 (1203)
T KOG4598|consen 431 TNAYMLMYRRIDPKRNA 447 (1203)
T ss_pred cchhhhhhhhcCccccc
Confidence 89999999999998764
No 22
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-40 Score=294.09 Aligned_cols=243 Identities=33% Similarity=0.517 Sum_probs=196.6
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCC----CCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCC
Q 024898 1 MHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSP----SEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLR 76 (261)
Q Consensus 1 ~QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~ 76 (261)
+||||+||+.++++.||++++.........+.... ........+....|..+..-..+.|.++|.|++...++|..
T Consensus 390 ~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~~d~~i~~lf~gQ~ks~Lkc~~ 469 (653)
T KOG1868|consen 390 SQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEEEDSKIGDLFVGQLKSYLKCQA 469 (653)
T ss_pred cccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhccccchHHHHHHHHHHHhheehhh
Confidence 59999999999999999999886543221111111 11112222223344445554555699999999999999999
Q ss_pred CCCccccccceEEEEeecCCC------CCHHHHHHhccCccccCCCCcccccccCCceeEE--EEEEEeecCCeEEEEEe
Q 024898 77 CETVTARDETFFDLSLDIEQN------SSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQ--KRMKIKKSPHTLVIHLK 148 (261)
Q Consensus 77 C~~~~~~~~~f~~l~l~i~~~------~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~--~~~~i~~lP~vL~i~l~ 148 (261)
|+..+.++++|..+.|+++.. .+|.+|+..|+..|.++++++|.|++|+...... |+..|.++|++|++||+
T Consensus 470 cg~~s~t~~~f~~lslpIp~~~~~~~~~~L~~C~~~ft~~ekle~~~~w~Cp~c~~~~~~~~lK~~~i~~lp~iLiihL~ 549 (653)
T KOG1868|consen 470 CGYTSTTFETFTDLSLPIPKKGFAGGKVSLEDCLSLFTKEEKLEGDEAWLCPRCKHKESSKTLKKLTILRLPKILIIHLK 549 (653)
T ss_pred cCCcceeeecceeeEEecccccccccccchHhhhccccchhhcccccccCCccccCcccccccceeeeecCCHHHHHHHH
Confidence 999999999999999999873 3599999999999999999999999999998885 99999999999999999
Q ss_pred eeeeecccceeEecceEEeeCce-eeCCCCC---CCCCceeEEcEEEeeeecCCCCeeEEEEEec--CCcEEEeeCceee
Q 024898 149 RFKYIEQLGRYKKLSYRVVFPLE-LKLSNTA---EDADIEYSLFAVVVHVGSGPNHGHYVSLVKS--HNHWLFFDDENVE 222 (261)
Q Consensus 149 Rf~~~~~~~~~~K~~~~v~~p~~-l~l~~~~---~~~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~--~~~W~~~nD~~V~ 222 (261)
||..+.. ...|....|+||.. .++.++. ......|+|+|||+|.|+ .++|||+|+++. .+.|+.|||+.|+
T Consensus 550 Rf~~~~~--~~~k~~~~v~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~Gt-l~sGHYta~~~~~~~~~W~~fdDs~Vs 626 (653)
T KOG1868|consen 550 RFSSDGN--SFNKLSTGVDFPLREADLSPRFAEKGNNPKSYRLYAVVNHSGT-LNSGHYTAYVYKNEKQRWFTFDDSEVS 626 (653)
T ss_pred HhccCcc--cccccceeeccchHhhhhchhccccCCCccceeeEEEEeccCc-ccCCceEEEEeecCCCceEEecCeeee
Confidence 9999863 66899999999986 4444322 223566999999999995 999999999987 5889999999999
Q ss_pred EeChHHHHhhhcCCCCCCCCCCceEEEEEEEeCCCC
Q 024898 223 MIDESAVQTFFGSAQEYSSNTDHGYILFYESLGAGS 258 (261)
Q Consensus 223 ~~~~~~v~~~~~~~~~~~~~~~~~yil~Y~r~~~~~ 258 (261)
++...++. ...||||||+|.+...
T Consensus 627 ~~~~~~~~------------~s~aYIlFY~~~~~~~ 650 (653)
T KOG1868|consen 627 PISETDVG------------SSSAYILFYERLGIFE 650 (653)
T ss_pred cccccccc------------CCCceEEEeecCCccc
Confidence 88888876 5799999999988654
No 23
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-37 Score=270.65 Aligned_cols=201 Identities=29% Similarity=0.537 Sum_probs=174.7
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCCCCCcc
Q 024898 2 HQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETVT 81 (261)
Q Consensus 2 QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~C~~~~ 81 (261)
||||+|||.+||+.|.+-..... ..++++|.+.+..++.|..|++++
T Consensus 404 QQDA~EFllfLl~ki~~n~rs~~---------------------------------~nptd~frF~ve~Rv~C~~c~kVr 450 (763)
T KOG0944|consen 404 QQDAQEFLLFLLEKIRENSRSSL---------------------------------PNPTDLFRFEVEDRVSCLGCRKVR 450 (763)
T ss_pred hhhHHHHHHHHHHHHhhcccccC---------------------------------CCHHHHHHhhhhhhhhhhcccccc
Confidence 99999999999999977332110 237889999999999999999999
Q ss_pred ccccceEEEEeecCC------CCCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCCeEEEEEeeeeeecc
Q 024898 82 ARDETFFDLSLDIEQ------NSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQ 155 (261)
Q Consensus 82 ~~~~~f~~l~l~i~~------~~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~vL~i~l~Rf~~~~~ 155 (261)
+..+....|.|+++. ..++..+|+.|+.+.+.+ ++|..|+.+..+.++..++++|++|+||+.||.+.+.
T Consensus 451 Ys~~~~~~i~lpv~~~~~v~~~v~~~~cleaff~pq~~d----f~s~ac~~K~~a~kt~~~ksfP~yLiiqv~rf~~~dw 526 (763)
T KOG0944|consen 451 YSYESEYLIQLPVPMTNEVREKVPISACLEAFFEPQVDD----FWSTACGEKKGATKTTRFKSFPDYLIIQVGRFTLQDW 526 (763)
T ss_pred ccchhheeeEeeccccccccccCCHHHHHHHhcCCcchh----hhhHhhcCccccccccccccCCceEEEEeeEEEecCc
Confidence 999999999999974 358999999999994444 9999999999999999999999999999999999554
Q ss_pred cceeEecceEEeeCceeeCCCCCC--------------------------------------------------------
Q 024898 156 LGRYKKLSYRVVFPLELKLSNTAE-------------------------------------------------------- 179 (261)
Q Consensus 156 ~~~~~K~~~~v~~p~~l~l~~~~~-------------------------------------------------------- 179 (261)
..+|++..+++|+.||+..+.+
T Consensus 527 --~pkKld~~iempe~ldls~~rs~g~~p~ee~lpde~~~~~~~~~d~s~i~qL~~MGFp~eac~rAly~tgN~~aEaA~ 604 (763)
T KOG0944|consen 527 --VPKKLDVSIEMPEELDLSSYRSKGLQPGEEALPDEAPETSEFAADRSVISQLVEMGFPEEACRRALYYTGNSGAEAAS 604 (763)
T ss_pred --eeeeeccceecchhhchhhhhhcCCCCcccccCCcCcccCccchhHHHHHHHHHcCCCHHHHHHHHhhhcCccHHHHH
Confidence 7799999999999999986541
Q ss_pred --------------------------------------------------------------------------------
Q 024898 180 -------------------------------------------------------------------------------- 179 (261)
Q Consensus 180 -------------------------------------------------------------------------------- 179 (261)
T Consensus 605 NWl~~HMdDpd~~~p~vvp~~~~~a~~~~~~e~~v~si~smGf~~~qa~~aL~~~n~nveravDWif~h~d~~~ed~~~~ 684 (763)
T KOG0944|consen 605 NWLMEHMDDPDIDDPFVVPGNSPKADAREVDEESVASIVSMGFSRNQAIKALKATNNNVERAVDWIFSHMDIPVEDAAEG 684 (763)
T ss_pred HHHHHhccCcccCCceecCCCCCccccCCCChhHheeeeeecCcHHHHHHHHHhcCccHHHHHHHHHhcccccccccCcC
Confidence
Q ss_pred -----------------CCCceeEEcEEEeeeecCCCCeeEEEEEecCCcEEEeeCceeeEeChHHHHhhhcCCCCCCCC
Q 024898 180 -----------------DADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSN 242 (261)
Q Consensus 180 -----------------~~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~~~~W~~~nD~~V~~~~~~~v~~~~~~~~~~~~~ 242 (261)
++..+|.|.|+|.|.|+++.+|||+|++|..|+|++|||++|- .+.++-
T Consensus 685 ~s~~~~~~~~~~~~~~~dg~~~Y~L~a~IsHmGts~~sGHYV~hirKegkWVlfNDeKv~-~S~~pp------------- 750 (763)
T KOG0944|consen 685 ESSSAIESESTPSGTGKDGPGKYALFAFISHMGTSAHSGHYVCHIRKEGKWVLFNDEKVA-ASQEPP------------- 750 (763)
T ss_pred CCCCcchhhcCCcccCCCCCcceeEEEEEecCCCCCCCcceEEEEeecCcEEEEcchhhh-hccCCh-------------
Confidence 2367899999999999999999999999999999999999997 344333
Q ss_pred CCceEEEEEEEeC
Q 024898 243 TDHGYILFYESLG 255 (261)
Q Consensus 243 ~~~~yil~Y~r~~ 255 (261)
...+||+||+|..
T Consensus 751 K~lgYvY~y~R~~ 763 (763)
T KOG0944|consen 751 KDLGYVYLYTRIA 763 (763)
T ss_pred hhcceEEEEEecC
Confidence 6789999999963
No 24
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-37 Score=268.57 Aligned_cols=223 Identities=33% Similarity=0.552 Sum_probs=193.3
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCCCCCcc
Q 024898 2 HQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETVT 81 (261)
Q Consensus 2 QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~C~~~~ 81 (261)
||||+||+..+++.+|.+.....+.... ........++++..|.|.+...++|..|+..+
T Consensus 248 Qqda~eF~~~~~~~~~~~~~~~~k~~~~--------------------~~~~~~c~~iv~~~F~G~L~~~v~c~~c~~~S 307 (492)
T KOG1867|consen 248 QQDAHEFLIALLDRLHREKDDCGKSLIA--------------------SQSNKQCPCIVHTIFSGTLQSDVTCQTCGSKS 307 (492)
T ss_pred ccchHHHHHHhccccccccccccccccc--------------------ccCCcccccccceeecceeccceeehhhccee
Confidence 9999999999999999977111110000 00011467899999999999999999999999
Q ss_pred ccccceEEEEeecCCC----------CCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCCeEEEEEeeee
Q 024898 82 ARDETFFDLSLDIEQN----------SSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFK 151 (261)
Q Consensus 82 ~~~~~f~~l~l~i~~~----------~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~vL~i~l~Rf~ 151 (261)
...++|+.++|.++.. .++.+++..+...+....+.++.|..|+..+..+++..+.++|.+|.++++||.
T Consensus 308 ~~~dpf~disL~i~~~~~~~~~~~~~~~~~~cl~~~~~~~~~~~~~~~~c~~c~~~~~~~kql~~~~lP~~l~~~lkRfe 387 (492)
T KOG1867|consen 308 TTYDPFMDISLDIPDQFTSSSVRSPELTLLDCLDRFTRSEQLGKDSKYKCSSCKSKQESTKQLTIRKLPAVLCLHLKRFE 387 (492)
T ss_pred eeccCccceeeecchhccCcccccchhhhhhhhhhhhhhhhcCcccccccCCcccccccccccccccCCceeeeeecccc
Confidence 9999999999999853 568999999888888777788999999999999999999999999999999999
Q ss_pred eecccceeEecceEEeeCceeeCCCCCCC--------CCceeEEcEEEeeeecCCCCeeEEEEEecCCcEEEeeCceeeE
Q 024898 152 YIEQLGRYKKLSYRVVFPLELKLSNTAED--------ADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEM 223 (261)
Q Consensus 152 ~~~~~~~~~K~~~~v~~p~~l~l~~~~~~--------~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~~~~W~~~nD~~V~~ 223 (261)
+....... |++..|.||..|+|.+++.. ++..|+|.|||+|+|. .++|||+||.|..+.|++|||+.|+.
T Consensus 388 ~~~~~~~~-ki~~~v~fp~~l~m~p~~~~~~~~~~~~~~~~Y~L~AVV~H~G~-~~SGHY~aY~r~~~~~~~~dDs~v~~ 465 (492)
T KOG1867|consen 388 HSATGARE-KIDSYVSFPVLLNMKPYCSSEKLKSQDNPDHLYELRAVVVHHGT-VGSGHYVAYRRQSGGWFKCDDSTVTK 465 (492)
T ss_pred cccccccc-ccCcccccchhhcCCccccccccccCCCCCceEEEEEEEEeccC-CCCCceEEEEEeCCCcEEEcCeEEEE
Confidence 88764444 99999999999999998753 4789999999999999 99999999999999999999999999
Q ss_pred eChHHHHhhhcCCCCCCCCCCceEEEEEEEeCCCC
Q 024898 224 IDESAVQTFFGSAQEYSSNTDHGYILFYESLGAGS 258 (261)
Q Consensus 224 ~~~~~v~~~~~~~~~~~~~~~~~yil~Y~r~~~~~ 258 (261)
+++++|+ ...||+|||.+.....
T Consensus 466 ~s~~eVl------------~~~aylLFY~~~~~~~ 488 (492)
T KOG1867|consen 466 VSEEEVL------------SSQAYLLFYTQEQVEY 488 (492)
T ss_pred eeHHHhh------------hchhhheehhHHhhhh
Confidence 9999999 6899999998876553
No 25
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-38 Score=274.86 Aligned_cols=223 Identities=28% Similarity=0.489 Sum_probs=197.4
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCCCCCc
Q 024898 1 MHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETV 80 (261)
Q Consensus 1 ~QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~C~~~ 80 (261)
||+|.|||...|.|.|+...+...- ...++.+|-|++.+-+.|.+-..+
T Consensus 272 ~QHDiqEfnrVl~DnLEksmrgt~V-------------------------------Enaln~ifVgkmksyikCvnvnyE 320 (1089)
T COG5077 272 MQHDIQEFNRVLQDNLEKSMRGTVV-------------------------------ENALNGIFVGKMKSYIKCVNVNYE 320 (1089)
T ss_pred HHHhHHHHHHHHHHHHHHhhcCChh-------------------------------hhHHhHHHHHHhhceeeEEEechh
Confidence 7999999999999999885543321 223888999999999999999999
Q ss_pred cccccceEEEEeecCCCCCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCCeEEEEEeeeeeecccceeE
Q 024898 81 TARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYK 160 (261)
Q Consensus 81 ~~~~~~f~~l~l~i~~~~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~vL~i~l~Rf~~~~~~~~~~ 160 (261)
+.+.+.||.+.|+++...+|+++++.|.+.|.++|+|+|.|++-| .+.+.|-..|.++||||.+||+||.++-..+...
T Consensus 321 sarvedfwdiqlNvK~~knLqeSfr~yIqvE~l~GdN~Y~ae~~G-lqdAkKGViFeSlPpVlhlqLKRFeyDfe~d~mv 399 (1089)
T COG5077 321 SARVEDFWDIQLNVKGMKNLQESFRRYIQVETLDGDNRYNAEKHG-LQDAKKGVIFESLPPVLHLQLKRFEYDFERDMMV 399 (1089)
T ss_pred hhhHHHHHHHHhcccchhhHHHHHHHhhhheeccCCccccccccc-chhhccceeeccCchHHHHHHHHhccccccCcee
Confidence 999999999999999999999999999999999999999999854 4578899999999999999999999999999999
Q ss_pred ecceEEeeCceeeCCCCCCC-------CCceeEEcEEEeeeecCCCCeeEEEEEec--CCcEEEeeCceeeEeChHHHHh
Q 024898 161 KLSYRVVFPLELKLSNTAED-------ADIEYSLFAVVVHVGSGPNHGHYVSLVKS--HNHWLFFDDENVEMIDESAVQT 231 (261)
Q Consensus 161 K~~~~v~~p~~l~l~~~~~~-------~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~--~~~W~~~nD~~V~~~~~~~v~~ 231 (261)
|++++.+||..+||.++.+. ....|.|+||++|.|. ...|||+|++|. +++||+|||..|+.++..+|+.
T Consensus 400 KINDryEFP~eiDl~pfld~da~ksen~d~vY~LygVlVHsGD-l~~GHyYallKpe~dg~WykfdDtrVtrat~kevle 478 (1089)
T COG5077 400 KINDRYEFPLEIDLLPFLDRDADKSENSDAVYVLYGVLVHSGD-LHEGHYYALLKPEKDGRWYKFDDTRVTRATEKEVLE 478 (1089)
T ss_pred eecccccCcchhccccccCchhhhhcccCcEEEEEEEEEeccc-cCCceEEEEeccccCCCceeecceehhhHHHHHHHH
Confidence 99999999999999999753 3589999999999999 999999999996 9999999999999999999975
Q ss_pred -hhcCCCCC--CC-------CCCceEEEEEEEeCC
Q 024898 232 -FFGSAQEY--SS-------NTDHGYILFYESLGA 256 (261)
Q Consensus 232 -~~~~~~~~--~~-------~~~~~yil~Y~r~~~ 256 (261)
.+||.... .. +.-.||+|+|-|++-
T Consensus 479 eNfGgd~~~~~k~r~~~~~kRfmsAYmLvYlRks~ 513 (1089)
T COG5077 479 ENFGGDHPYKDKIRDHSGIKRFMSAYMLVYLRKSM 513 (1089)
T ss_pred HhcCCCCCCcccccCCchhhhhhhhheeeeehHhH
Confidence 67776533 12 334569999999864
No 26
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-36 Score=268.28 Aligned_cols=237 Identities=57% Similarity=0.919 Sum_probs=198.7
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCC-CCCCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCCCCC
Q 024898 1 MHQDAHEFLNFLLNELVDILEKEEAAKSDPESS-SPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCET 79 (261)
Q Consensus 1 ~QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~C~~ 79 (261)
|||||+||+..+++.+++-+............. .+..............+........+++.+|.|++...+.|.+|..
T Consensus 321 ~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~v~~lf~g~l~~et~Clsc~t 400 (587)
T KOG1864|consen 321 MQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAASWTNKGHHKSLRENWVSKLFQGILTNETRCLSCET 400 (587)
T ss_pred hhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccccccccccccccccchhHHHHhhcCeeeeeeeeccccc
Confidence 699999999999999999776654332211110 0111111111111222244445678999999999999999999999
Q ss_pred ccccccceEEEEeecC--CCCCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCCeEEEEEeeeeeecccc
Q 024898 80 VTARDETFFDLSLDIE--QNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLG 157 (261)
Q Consensus 80 ~~~~~~~f~~l~l~i~--~~~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~vL~i~l~Rf~~~~~~~ 157 (261)
.+.+.+.|..+.++++ ...++..+|+.+..+|.+.|+++|.|++|...+.+.++..++.+|.+|+|+|+||.+.....
T Consensus 401 ~T~~de~f~D~~~~v~~de~~si~~~l~~~~~~e~l~g~nky~c~~c~s~qeae~~l~~k~lp~~L~l~Lkrfk~~~~~~ 480 (587)
T KOG1864|consen 401 ITSRDEGFLDLSVAVEIDENTSITNLLKSFSSTETLSGENKYSCENCCSLQEAERRLKIKKLPYVLTLHLKRFKYSEQQN 480 (587)
T ss_pred cccccccccccceeccccccccHHHHHHHhcchhhccCCCcccccccCchhhHHHhccccCCcceeeeehhccccccccc
Confidence 9999999999999998 68899999999999999999999999999999999999999999999999999999998777
Q ss_pred eeEecceEEeeCceeeCCCCCCCCC---ceeEEcEEEeeeecCCCCeeEEEEEecCCc-EEEeeCceeeEeChHHHHhhh
Q 024898 158 RYKKLSYRVVFPLELKLSNTAEDAD---IEYSLFAVVVHVGSGPNHGHYVSLVKSHNH-WLFFDDENVEMIDESAVQTFF 233 (261)
Q Consensus 158 ~~~K~~~~v~~p~~l~l~~~~~~~~---~~Y~L~gvv~H~G~~~~~GHY~~~~~~~~~-W~~~nD~~V~~~~~~~v~~~~ 233 (261)
...|+...+.+|..+.+........ ..|.|+|||+|.|.+.+.|||+||+|..+. |+.|||+.|.+++.++|.+..
T Consensus 481 ~~~kl~~~v~~plel~l~~~~~~~~~~~~~Y~L~avVvH~G~~p~~GHYia~~r~~~~nWl~fdD~~V~~~s~~~v~~~~ 560 (587)
T KOG1864|consen 481 RYTKLLYRVVFPLELRLKDTLKDDNNPDRKYDLVAVVVHLGSTPNRGHYVAYVKSLDFNWLLFDDDNVEPISEEPVSEFT 560 (587)
T ss_pred cccccccccccccceeeccccccccCccceeeEEEEEEeccCCCCCcceEEEEeeCCCCceecccccccccCcchhhhcc
Confidence 7899999999999999988776543 799999999999999999999999999655 999999999999999998877
Q ss_pred cCCC
Q 024898 234 GSAQ 237 (261)
Q Consensus 234 ~~~~ 237 (261)
|++.
T Consensus 561 ~~s~ 564 (587)
T KOG1864|consen 561 GSSG 564 (587)
T ss_pred CCCc
Confidence 6643
No 27
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.9e-34 Score=231.84 Aligned_cols=172 Identities=26% Similarity=0.500 Sum_probs=132.8
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCCCCCcc
Q 024898 2 HQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETVT 81 (261)
Q Consensus 2 QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~C~~~~ 81 (261)
|||+.||+.+|+++|..-+-.. .-++|.|-....-. .+
T Consensus 23 q~D~~e~~~~l~~~~~~~~~~~------------------------------------~~~~~~~g~~~~~~------~~ 60 (241)
T cd02670 23 QQDPEEFFNFITDKLLMPLLEP------------------------------------KVDIIHGGKKDQDD------DK 60 (241)
T ss_pred hcCHHHHHHHHHHHHhhhhhhH------------------------------------HHHHHhcCcccccc------cc
Confidence 8999999999999987644221 22344442111100 13
Q ss_pred ccccceEEEEeecCC---CCCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCCeEEEEEeeeeeecccce
Q 024898 82 ARDETFFDLSLDIEQ---NSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGR 158 (261)
Q Consensus 82 ~~~~~f~~l~l~i~~---~~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~vL~i~l~Rf~~~~~~~~ 158 (261)
...+.+..|.++.+. ..+|++||+.|++.|. |.++|++|+|||+||.++. +.
T Consensus 61 ~~~e~~l~l~ip~~~~~~~~tLedcLe~~~~~e~-----------------------i~~lP~vLiIhLKRF~~~~--~~ 115 (241)
T cd02670 61 LVNERLLQIPVPDDDDGGGITLEQCLEQYFNNSV-----------------------FAKAPSCLIICLKRYGKTE--GK 115 (241)
T ss_pred ccccceEEeecccCCCCCcCCHHHHHHHHhchhh-----------------------hhhCCCeEEEEEEccccCC--Cc
Confidence 345667777776543 4699999999998885 8899999999999999987 46
Q ss_pred eEecceEEeeCceeeCCCCCCC-------------------------CCceeEEcEEEeeeecCCCCeeEEEEEecC---
Q 024898 159 YKKLSYRVVFPLELKLSNTAED-------------------------ADIEYSLFAVVVHVGSGPNHGHYVSLVKSH--- 210 (261)
Q Consensus 159 ~~K~~~~v~~p~~l~l~~~~~~-------------------------~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~~--- 210 (261)
..|+...|.||..|||.++... ....|+|+|||+|.|.+.++|||+||+|..
T Consensus 116 ~~Kl~~~I~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~s~~sGHYva~vr~~~~~ 195 (241)
T cd02670 116 AQKMFKKILIPDEIDIPDFVADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGTSLETGHYVAFVRYGSYS 195 (241)
T ss_pred ceeCCcEECCCCcCCchhhcccccccccccccccccccccccccCCCCCeEEEEEEEEEeCCCCCCCcCeEEEEECCccc
Confidence 6899999999999999987532 245899999999999888999999999983
Q ss_pred ----------CcEEEeeCceeeEeChH------HHHhhhcCCCCCCCCCCceEEEEEE
Q 024898 211 ----------NHWLFFDDENVEMIDES------AVQTFFGSAQEYSSNTDHGYILFYE 252 (261)
Q Consensus 211 ----------~~W~~~nD~~V~~~~~~------~v~~~~~~~~~~~~~~~~~yil~Y~ 252 (261)
+.|++|||..|+.+... .+. ...||||||+
T Consensus 196 ~~~~~~~~~~~~W~~FDD~~v~~~~~~~~~~~~~~~------------~~~aYmLFYq 241 (241)
T cd02670 196 LTETDNEAYNAQWVFFDDMADRDGVSNGFNIPAARL------------LEDPYMLFYQ 241 (241)
T ss_pred ccccccCCCCCeEEEecCcccccccccccccchhcc------------cCCceEEEeC
Confidence 68999999988776432 222 6899999996
No 28
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=7e-33 Score=229.84 Aligned_cols=169 Identities=34% Similarity=0.572 Sum_probs=136.8
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCCCCCc
Q 024898 1 MHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETV 80 (261)
Q Consensus 1 ~QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~C~~~ 80 (261)
.||||+|||..||+.|++++...... ..+........+++.++|.++....+.|..|+..
T Consensus 92 ~qqDa~E~l~~ll~~l~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~f~~~~~~~~~c~~c~~~ 151 (269)
T PF00443_consen 92 EQQDAHEFLSFLLDWLDEEFNSSFKR--------------------KSWKNTNSSEDSLISDLFGGQFESSIKCSSCKNS 151 (269)
T ss_dssp STEEHHHHHHHHHHHHHHHHTSCSSH--------------------HHHHHHHCCEESHHHHHH-EEEEEEEEETTTTCE
T ss_pred cccchhhhhcccccccchhhcccccc--------------------cccccccccccccccccccccccccccccccccc
Confidence 38999999999999999988663210 0001122345678999999999999999999987
Q ss_pred cccccceEEEEeecCCCCCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCCeEEEEEeeeeeecccceeE
Q 024898 81 TARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYK 160 (261)
Q Consensus 81 ~~~~~~f~~l~l~i~~~~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~vL~i~l~Rf~~~~~~~~~~ 160 (261)
...+.++|++|+|+|+||.++...+...
T Consensus 152 ----------------------------------------------------~~~~~~~P~~L~i~l~R~~~~~~~~~~~ 179 (269)
T PF00443_consen 152 ----------------------------------------------------QSSISSLPPILIIQLKRFEFDQETGRSK 179 (269)
T ss_dssp ----------------------------------------------------EEEEEEBBSEEEEEEE-EEEESTSSEEE
T ss_pred ----------------------------------------------------ccccccccceeeeccccceecccccccc
Confidence 6778999999999999999998888899
Q ss_pred ecceEEeeC-ceeeCCCCCCCC------CceeEEcEEEeeeecCCCCeeEEEEEecC--CcEEEeeCceeeEeChHHHHh
Q 024898 161 KLSYRVVFP-LELKLSNTAEDA------DIEYSLFAVVVHVGSGPNHGHYVSLVKSH--NHWLFFDDENVEMIDESAVQT 231 (261)
Q Consensus 161 K~~~~v~~p-~~l~l~~~~~~~------~~~Y~L~gvv~H~G~~~~~GHY~~~~~~~--~~W~~~nD~~V~~~~~~~v~~ 231 (261)
|+..+|.+| ..|+|.++...+ ...|+|.|||+|.| +.++|||+|++|+. ++|++|||+.|+++++++|.+
T Consensus 180 K~~~~v~~~~~~l~l~~~~~~~~~~~~~~~~Y~L~avi~H~G-~~~~GHY~a~v~~~~~~~W~~~dD~~v~~~~~~~v~~ 258 (269)
T PF00443_consen 180 KINNPVEFPLEELDLSPYLEKNNSECQSNVKYRLVAVIVHYG-SADSGHYVAYVRDSDDGKWYKFDDSRVTEVSWEEVIK 258 (269)
T ss_dssp E--CEEB--SSEEEGGGGBSSCCCTHTSSSEEEEEEEEEEES-STTSEEEEEEEEETTTTEEEEEETTEEEEESHHHHCC
T ss_pred ccccccccCchhhhhhhhhccccccccccceeeehhhhcccc-ccccceEEEeeccccCCeEEEeeCCceEECCHHHHhh
Confidence 999999999 699999887654 37999999999999 59999999999983 469999999999999999974
Q ss_pred hhcCCCCCCCCCCceEEEEE
Q 024898 232 FFGSAQEYSSNTDHGYILFY 251 (261)
Q Consensus 232 ~~~~~~~~~~~~~~~yil~Y 251 (261)
.. ..+||||||
T Consensus 259 ~~---------~~~~yll~Y 269 (269)
T PF00443_consen 259 SS---------NSTAYLLFY 269 (269)
T ss_dssp GG---------STCEEEEEE
T ss_pred cc---------CCceEEEeC
Confidence 32 379999999
No 29
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-33 Score=238.29 Aligned_cols=202 Identities=26% Similarity=0.468 Sum_probs=172.1
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCCCCCcc
Q 024898 2 HQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETVT 81 (261)
Q Consensus 2 QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~C~~~~ 81 (261)
||||+|||.+||+.|.+-.... ..+.|.++|.+++..+..|..|+.++
T Consensus 394 QQDA~EFLlfLL~kirk~~~S~--------------------------------~~~~It~lf~Fe~e~rlsC~~C~~v~ 441 (749)
T COG5207 394 QQDAHEFLLFLLEKIRKGERSY--------------------------------LIPPITSLFEFEVERRLSCSGCMDVS 441 (749)
T ss_pred hhhHHHHHHHHHHHHhhccchh--------------------------------cCCCcchhhhhhhcceeccccccccc
Confidence 9999999999999997633211 23458899999999999999999999
Q ss_pred ccccceEEEEeecCCC---CCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCCeEEEEEeeeeeecccce
Q 024898 82 ARDETFFDLSLDIEQN---SSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGR 158 (261)
Q Consensus 82 ~~~~~f~~l~l~i~~~---~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~vL~i~l~Rf~~~~~~~~ 158 (261)
...++..++.+++.+. .++.++++.|+.++.++ |.|++|+.+..+.++..++++|++||+|..||...+. .
T Consensus 442 ySye~~~~i~i~le~n~E~~di~~~v~a~f~pdtiE----~~CenCk~K~~a~~k~~~kslPk~LIlq~~R~~lqny--~ 515 (749)
T COG5207 442 YSYESMLMICIFLEGNDEPQDIRKSVEAFFLPDTIE----WSCENCKGKKKASRKPFIKSLPKYLILQVGRYSLQNY--K 515 (749)
T ss_pred ccccceEEEEeecccCcchhhHHHHHHheECcccee----eehhhhcCcccccccchhhccCceeEEecceeeccce--e
Confidence 9999999999998764 57999999999999998 9999999999999999999999999999999998776 5
Q ss_pred eEecceEEeeCce--eeCCCCCC---------------------------------------------------------
Q 024898 159 YKKLSYRVVFPLE--LKLSNTAE--------------------------------------------------------- 179 (261)
Q Consensus 159 ~~K~~~~v~~p~~--l~l~~~~~--------------------------------------------------------- 179 (261)
..|+..++.+... +++.++++
T Consensus 516 v~kls~pi~~~~D~m~~~~s~msk~~PqtEn~LPdedE~~t~Nqs~I~qL~~mGfp~~~~~rAL~~tgNqDaEsAMNWLF 595 (749)
T COG5207 516 VEKLSDPIEMRSDDMIKLGSFMSKFDPQTENLLPDEDEAFTDNQSLIRQLVDMGFPEEDAARALGITGNQDAESAMNWLF 595 (749)
T ss_pred ehhccCceEEccccccchhhHhhccCCcccccCCccccccCchHHHHHHHHHcCCCHHHHHHHHhhccCcchHHHHHHHH
Confidence 6788888877664 55554431
Q ss_pred --------------------------------------------------------------------------------
Q 024898 180 -------------------------------------------------------------------------------- 179 (261)
Q Consensus 180 -------------------------------------------------------------------------------- 179 (261)
T Consensus 596 qHMdDPdlndP~~~~~~vPKkDkeVdE~~~~Slle~Gln~n~~Rkal~~~n~d~~r~V~w~~N~~D~tF~EP~v~~eeqq 675 (749)
T COG5207 596 QHMDDPDLNDPFVPPPNVPKKDKEVDESKARSLLENGLNPNLCRKALMDMNTDSKRRVVWCINDDDGTFPEPEVPNEEQQ 675 (749)
T ss_pred hhccCcccCCCCCCCCCCCcccccccHHHHHHHHHcCCCHHHHHHHHHHccCCchheEEEEEeCCCCCCCCCCCCchhhh
Confidence
Q ss_pred -------CCCceeEEcEEEeeeecCCCCeeEEEEEec----CCcEEEeeCceeeEeChHHHHhhhcCCCCCCCCCCceEE
Q 024898 180 -------DADIEYSLFAVVVHVGSGPNHGHYVSLVKS----HNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYI 248 (261)
Q Consensus 180 -------~~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~----~~~W~~~nD~~V~~~~~~~v~~~~~~~~~~~~~~~~~yi 248 (261)
.....|.|.|||+|.|.++.+|||++|+|. .-+|+++||+++...+.-+++ ..++||
T Consensus 676 qk~~~~~STa~PYaLtAvI~HkG~s~haGHYv~fIrk~~~~K~kWvl~nDek~v~~~svE~~------------k~nGYi 743 (749)
T COG5207 676 QKKDLGYSTAKPYALTAVICHKGDSIHAGHYVWFIRKNGKDKWKWVLKNDEKTVLNSSVEVL------------KDNGYI 743 (749)
T ss_pred hcccccccccCcccceeEEeccCCcccccceEEEEecccCcceeEEEEccchheehhhHHHH------------hhCCeE
Confidence 113459999999999999999999999998 346999999998887655665 578999
Q ss_pred EEEEE
Q 024898 249 LFYES 253 (261)
Q Consensus 249 l~Y~r 253 (261)
++|+|
T Consensus 744 ylf~R 748 (749)
T COG5207 744 YLFKR 748 (749)
T ss_pred EEEec
Confidence 99998
No 30
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.4e-33 Score=238.60 Aligned_cols=201 Identities=22% Similarity=0.318 Sum_probs=156.3
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCCCC--
Q 024898 1 MHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCE-- 78 (261)
Q Consensus 1 ~QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~C~-- 78 (261)
.||||+||+..||+.|+.+++........ .+........++|.++|.|++.+.++|..|+
T Consensus 97 ~QQDa~Ef~~~lld~Le~~lk~~~~~~~~------------------~~~~~~~~~~~~I~~lF~G~~~~~i~c~~~~~~ 158 (343)
T cd02666 97 RQQDVTECIDNVLFQLEVALEPISNAFAG------------------PDTEDDKEQSDLIKRLFSGKTKQQLVPESMGNQ 158 (343)
T ss_pred cccchHHHHHHHHHHHHHHhcCccccccC------------------cccccccchhhhhhHhceeeEEEEEEecccCCC
Confidence 59999999999999999998754321110 0001112346789999999999999999997
Q ss_pred -CccccccceEEEEeecCC----------CCCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCCeEEEEE
Q 024898 79 -TVTARDETFFDLSLDIEQ----------NSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHL 147 (261)
Q Consensus 79 -~~~~~~~~f~~l~l~i~~----------~~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~vL~i~l 147 (261)
..+.+.++|+.|.|+|+. ..+|+++|+.|++.|. |.++|++|.|||
T Consensus 159 ~~~s~~~E~F~~L~l~I~~~~~~~~~~~~~~~L~d~L~~~~~~e~-----------------------~~~~P~vl~~ql 215 (343)
T cd02666 159 PSVRTKTERFLSLLVDVGKKGREIVVLLEPKDLYDALDRYFDYDS-----------------------LTKLPQRSQVQA 215 (343)
T ss_pred CCCccccceeEEEEEecCcccccccccCCCCCHHHHHHHhcChhh-----------------------hccCCHHHHHHH
Confidence 688999999999999985 5789999999997775 889999999998
Q ss_pred eeeeeecccceeEecceEEeeCceeeCCCCC-------------------------------CCCCceeEEcEEEeeeec
Q 024898 148 KRFKYIEQLGRYKKLSYRVVFPLELKLSNTA-------------------------------EDADIEYSLFAVVVHVGS 196 (261)
Q Consensus 148 ~Rf~~~~~~~~~~K~~~~v~~p~~l~l~~~~-------------------------------~~~~~~Y~L~gvv~H~G~ 196 (261)
+ ++.......+..++.++|...+..+.. ......|+|+|||+|.|.
T Consensus 216 q---~~~~~~~~~~~~dry~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Y~L~avv~H~G~ 292 (343)
T cd02666 216 Q---LAQPLQRELISMDRYELPSSIDDIDELIREAIQSESSLVRQAQNELAELKHEIEKQFDDLKSYGYRLHAVFIHRGE 292 (343)
T ss_pred h---hcccccchheeeccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceEEEEEEEeecC
Confidence 8 222223345566666666644433221 124788999999999999
Q ss_pred CCCCeeEEEEEec--CCcEEEeeCceeeEeChHHHHhhhcCCCCCCCCCCceEEEEEE
Q 024898 197 GPNHGHYVSLVKS--HNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYE 252 (261)
Q Consensus 197 ~~~~GHY~~~~~~--~~~W~~~nD~~V~~~~~~~v~~~~~~~~~~~~~~~~~yil~Y~ 252 (261)
.++|||++++|+ ++.|++|||..|++++.++++....|+ ..+||+|+|.
T Consensus 293 -~~~GHY~~~~~~~~~~~W~~~dD~~V~~v~~~ev~~~~~~~------~~~pY~l~Yv 343 (343)
T cd02666 293 -ASSGHYWVYIKDFEENVWRKYNDETVTVVPASEVFLFTLGN------TATPYFLVYV 343 (343)
T ss_pred -CCCCeEEEEEEECCCCeEEEEECCeeEEecHHHHhhcccCC------CCCCEEEEeC
Confidence 699999999997 589999999999999999998642332 6799999994
No 31
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.6e-34 Score=265.25 Aligned_cols=143 Identities=38% Similarity=0.775 Sum_probs=134.4
Q ss_pred CCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCCeEEEEEeeeeeecccceeEecceEEeeCce-eeCCC
Q 024898 98 SSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLE-LKLSN 176 (261)
Q Consensus 98 ~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~vL~i~l~Rf~~~~~~~~~~K~~~~v~~p~~-l~l~~ 176 (261)
.+|++||+.|+++|.+..+++|+|++|++...|.++..+++||++|+|||+||++.+. ...|+...|+||.. ||+.+
T Consensus 696 ~sL~~cl~~F~~~E~L~~~~~w~C~~Cke~~~A~Kk~~lwrlPeiLiihLKrF~~~r~--~~~k~~~~v~fPi~~ld~s~ 773 (842)
T KOG1870|consen 696 NSLESCLELFSEPETLGKDDRWYCPQCKELRQATKKLDLWRLPEILIIHLKRFQYSRE--SSSKVKTKVEFPLGSLDLSE 773 (842)
T ss_pred ccHHHHHHhhcchhcCCccccccChHHHHHHHHhhhhhhhhCCceEEEEeecceeech--hhhhhCccccCCCcCCCcch
Confidence 5799999999999999999999999999999999999999999999999999999877 55899999999988 89999
Q ss_pred CCCCCC-ceeEEcEEEeeeecCCCCeeEEEEEec--CCcEEEeeCceeeEeChHHHHhhhcCCCCCCCCCCceEEEEEEE
Q 024898 177 TAEDAD-IEYSLFAVVVHVGSGPNHGHYVSLVKS--HNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYES 253 (261)
Q Consensus 177 ~~~~~~-~~Y~L~gvv~H~G~~~~~GHY~~~~~~--~~~W~~~nD~~V~~~~~~~v~~~~~~~~~~~~~~~~~yil~Y~r 253 (261)
++..+. ..|+|+||+.|+|. +.+|||+||+|. +++||.|||+.|.+++++++. ...||+|||+|
T Consensus 774 ~~~~~~~~~Y~l~av~nHyG~-l~~GHYta~~k~~~~~~w~~fdDs~v~~~~~~~i~------------t~~aY~Lfy~r 840 (842)
T KOG1870|consen 774 FVVNKEQVLYDLYAVGNHYGQ-LSGGHYTAYAKNVGDGKWYLFDDSSVSEVDEDEID------------TEAAYVLFYRR 840 (842)
T ss_pred hhccCccceeeeeeeecccCC-cCCcchhhhhhcCCCCceEEeccccCCCCChhhcc------------cccceEEEEEe
Confidence 987754 99999999999999 999999999998 899999999999999999998 78999999999
Q ss_pred eC
Q 024898 254 LG 255 (261)
Q Consensus 254 ~~ 255 (261)
++
T Consensus 841 ~~ 842 (842)
T KOG1870|consen 841 LD 842 (842)
T ss_pred cC
Confidence 74
No 32
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.6e-32 Score=223.07 Aligned_cols=157 Identities=25% Similarity=0.376 Sum_probs=134.4
Q ss_pred CCCCCccccccceEEEEeecCC-----CCCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCC----eEEE
Q 024898 75 LRCETVTARDETFFDLSLDIEQ-----NSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPH----TLVI 145 (261)
Q Consensus 75 ~~C~~~~~~~~~f~~l~l~i~~-----~~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~----vL~i 145 (261)
..|+.++...+++..|+|++|. ..+|.++|+.++++|... +++|++|++.+.+.++..|.++|+ ||+|
T Consensus 89 ~~C~~~s~~~~~~~~LsLpip~~~~~~~~sl~~cL~~~~~~E~~~---~~~C~~C~~~~~a~k~~~i~~lP~~L~~VL~i 165 (268)
T cd02672 89 FSCGTSRNSVSLLYTLSLPLGSTKTSKESTFLQLLKRSLDLEKVT---KAWCDTCCKYQPLEQTTSIRHLPDILLLVLVI 165 (268)
T ss_pred CCCCceeeccccceeeeeecCccccccCCCHHHHHHHHhhhhhcc---cccccccCcccccEEEEEeecCCCcccceEEE
Confidence 4899999999999999999985 459999999999998664 389999999999999999999999 9999
Q ss_pred EEeeeeeeccc-----ceeEecceEEeeCceeeCCCCCC---CCCceeEEcEEEeeeecCCCCeeEEEEEec------CC
Q 024898 146 HLKRFKYIEQL-----GRYKKLSYRVVFPLELKLSNTAE---DADIEYSLFAVVVHVGSGPNHGHYVSLVKS------HN 211 (261)
Q Consensus 146 ~l~Rf~~~~~~-----~~~~K~~~~v~~p~~l~l~~~~~---~~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~------~~ 211 (261)
|++||..+... ....|+...|.+|..+++..... .....|+|+|||+|.|.+.++|||+|++|. .+
T Consensus 166 ~lkrf~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~Y~L~gvV~hig~~~~~GHyva~vk~~~~~~~~~ 245 (268)
T cd02672 166 NLSVTNGEFDDINVVLPSGKVMQNKVSPKAIDHDKLVKNRGQESIYKYELVGYVCEINDSSRGQHNVVFVIKVNEESTHG 245 (268)
T ss_pred EEeccChhhcccCcceeEEEecCCeecccccccchhhhccCCCCCceEEEEEEEEEecCCCCCCcEEEEEEccCCCCCCC
Confidence 99999965432 23467788999998866544332 235789999999999986699999999998 57
Q ss_pred cEEEeeCceeeEeChHHHHhhhcCCCCCCCCCCceEEEEEE
Q 024898 212 HWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYE 252 (261)
Q Consensus 212 ~W~~~nD~~V~~~~~~~v~~~~~~~~~~~~~~~~~yil~Y~ 252 (261)
+||+|||..|+++++ .||||||+
T Consensus 246 ~WylFND~~V~~vs~------------------~aYiLfY~ 268 (268)
T cd02672 246 RWYLFNDFLVTPVSE------------------LAYILLYQ 268 (268)
T ss_pred cEEEecCeEEEEcCc------------------hheeeecC
Confidence 899999999999887 49999995
No 33
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.5e-30 Score=247.82 Aligned_cols=225 Identities=28% Similarity=0.476 Sum_probs=198.4
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCCCCCc
Q 024898 1 MHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETV 80 (261)
Q Consensus 1 ~QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~C~~~ 80 (261)
+|||++||+..|+|.|++.+..... ...+.++|.|++.+.+.|..|...
T Consensus 252 ~QqDvqEf~~~l~d~LE~~~~~~~~-------------------------------~~~l~~lf~g~~~~~i~c~~~~~~ 300 (1093)
T KOG1863|consen 252 EQQDVQEFLTKLLDWLEDSMIDAKV-------------------------------ENTLQDLFTGKMKSVIKCIDVDFE 300 (1093)
T ss_pred hhhhHHHHHHHHHHHHHhhccchhh-------------------------------hhhhhhhhcCCcceEEEEEeeeee
Confidence 6999999999999999997766542 234889999999999999999999
Q ss_pred cccccceEEEEeecCCCCCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCCeEEEEEeeeeeecccceeE
Q 024898 81 TARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYK 160 (261)
Q Consensus 81 ~~~~~~f~~l~l~i~~~~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~vL~i~l~Rf~~~~~~~~~~ 160 (261)
+.+.+.|+.+.+++....++.++|+.|+..|.++|+++ +|..|...+.+.+...+.++|++|.|+|+||.++..++...
T Consensus 301 s~r~e~f~d~ql~~~g~~nl~~sf~~y~~~E~l~gdn~-~~~~~~~~~~a~k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~ 379 (1093)
T KOG1863|consen 301 SSRSESFLDLQLNGKGVKNLEDSLHLYFEAEILLGDNK-YDAECHGLQDAKKGVLFDSLPPVLFIQLMRFEYDFSTGQKI 379 (1093)
T ss_pred ccccccccCccccccchhhHHHHHHHhhhHHHhcCCcc-ccccccchhhhhcceeeccCCchhhhhhhheeeeccCCcee
Confidence 99999999999999999999999999999999999998 89999999999999999999999999999999999999999
Q ss_pred ecceEEeeCceeeCCCCCCC------CC-ceeEEcEEEeeeecCCCCeeEEEEEec--CCcEEEeeCceeeEeChHHHHh
Q 024898 161 KLSYRVVFPLELKLSNTAED------AD-IEYSLFAVVVHVGSGPNHGHYVSLVKS--HNHWLFFDDENVEMIDESAVQT 231 (261)
Q Consensus 161 K~~~~v~~p~~l~l~~~~~~------~~-~~Y~L~gvv~H~G~~~~~GHY~~~~~~--~~~W~~~nD~~V~~~~~~~v~~ 231 (261)
|+.+.+.||..|+|.++... .. ..|+|.||.+|.|. .++|||++|++. .++|++|||..|+.++..+++.
T Consensus 380 Ki~d~~~fp~~i~~d~~~~~~~~~~~~~~~~y~l~~v~vh~g~-~~~ghy~~~i~~~~~~~w~kfdd~~v~~~~~~~~l~ 458 (1093)
T KOG1863|consen 380 KINDKFEFPLIIDMDRYLSRFKAEESERSAVYSLHAVLVHSGD-AHSGHYVAYINPKLDGKWVKFDDLVVTVVSEKEALE 458 (1093)
T ss_pred ehhhccCCccccccchhccccchhhhhccceeccchhhccccc-ccCccceeeecchhhccceeccCceeeeccHHHHHH
Confidence 99999999999999999652 23 49999999999887 999999999996 8999999999999999777764
Q ss_pred -hhcCCCCCC---CCCCceEEEEEEEeCCCC
Q 024898 232 -FFGSAQEYS---SNTDHGYILFYESLGAGS 258 (261)
Q Consensus 232 -~~~~~~~~~---~~~~~~yil~Y~r~~~~~ 258 (261)
.+|+.+... .....||+|+|-|.+...
T Consensus 459 ~~~g~~~~~~~~~~~~~~~~~lv~~~~s~~~ 489 (1093)
T KOG1863|consen 459 QNYGTEEIELSSTADFKNAYMLVYIRDSCES 489 (1093)
T ss_pred hhCCCcchhhhcccccCCcceEEEEecCcHH
Confidence 555554221 112238999999987653
No 34
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.1e-30 Score=229.84 Aligned_cols=143 Identities=35% Similarity=0.606 Sum_probs=124.9
Q ss_pred CCHHHHHHhccCccccCCCCcccccccCCc---------------------------eeEEEEEEEeecCCeEEEEEeee
Q 024898 98 SSITSCLKNFSSTETLNAEDKFFCDKCCSL---------------------------QEAQKRMKIKKSPHTLVIHLKRF 150 (261)
Q Consensus 98 ~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~---------------------------~~~~~~~~i~~lP~vL~i~l~Rf 150 (261)
.+++.||..|++-|++.++|+|.|++|.+. ..+.++..|..+||||+|||+||
T Consensus 678 ~Svq~CL~nFT~~E~Ls~~N~~~CEnCtk~~n~~~r~k~~~n~~~sk~s~~es~~~~t~akk~~li~~aPpVltihlKrf 757 (877)
T KOG1873|consen 678 CSVQRCLKNFTKVEILSGDNKWACENCTKNLNLQRREKRGLNEDNSKYSFNESEYRNTYAKKKVLINKAPPVLTIHLKRF 757 (877)
T ss_pred ccHHHHHHhhhhhhhcccccchhhhhhhccccccchhhccCCCCcccccccchhhhhhhhheeeecccCCceeeehHhhh
Confidence 479999999999999999999999999651 11245677889999999999999
Q ss_pred eeecccceeEecceEEeeCceeeCCCCCCC--------CCceeEEcEEEeeeecCCCCeeEEEEEec-------------
Q 024898 151 KYIEQLGRYKKLSYRVVFPLELKLSNTAED--------ADIEYSLFAVVVHVGSGPNHGHYVSLVKS------------- 209 (261)
Q Consensus 151 ~~~~~~~~~~K~~~~v~~p~~l~l~~~~~~--------~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~------------- 209 (261)
..+.. ++..|....+.|++.+|+..++.. ....|+|.|+|.|.|+ +..|||++|+|.
T Consensus 758 ~q~~~-~~~~k~~~h~~f~E~~dL~~~~~~rc~~l~~~~s~~Yrl~gvvehsgt-m~~ghyvayv~~~t~~~~~~~~~~~ 835 (877)
T KOG1873|consen 758 FQDIR-GRLSKLNKHVDFKEFEDLLDYMDFRCSHLDEPSSFVYRLAGVVEHSGT-MSYGHYVAYVRGGTFLDLSAPSNSK 835 (877)
T ss_pred hhhhh-chhhcccccchHHHHHHHHHHhhhhccccCCcchhhhhhccceecccc-ccCCcchhhhhccchhhccCccccc
Confidence 87764 458899999999999998887642 2568999999999999 999999999983
Q ss_pred ---------CCcEEEeeCceeeEeChHHHHhhhcCCCCCCCCCCceEEEEEEEe
Q 024898 210 ---------HNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESL 254 (261)
Q Consensus 210 ---------~~~W~~~nD~~V~~~~~~~v~~~~~~~~~~~~~~~~~yil~Y~r~ 254 (261)
.++||.+.|++|.++++++|+ ..+||||||+|+
T Consensus 836 ~~~sd~~~~~~~Wy~iSDs~VrevS~d~vL------------kseAYlLFYERI 877 (877)
T KOG1873|consen 836 DFESDAGIPSGRWYYISDSIVREVSLDEVL------------KSEAYLLFYERI 877 (877)
T ss_pred cchhccCCCCcceEEecchheecccHHHHh------------hhhhhhhheecC
Confidence 368999999999999999999 679999999995
No 35
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=99.96 E-value=2.9e-28 Score=205.58 Aligned_cols=197 Identities=23% Similarity=0.367 Sum_probs=166.6
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCCCCCcc
Q 024898 2 HQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETVT 81 (261)
Q Consensus 2 QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~C~~~~ 81 (261)
|+|+++|+.+||++|+.++........- ..........+.|.++|+......++|..|+..+
T Consensus 82 ~~~iq~~~~Fll~~l~~~~~~~~~~~~~------------------~~~~~~~~~~~~i~~~f~~~~~~~~~c~~c~~~~ 143 (295)
T PF13423_consen 82 QQDIQSLNRFLLEQLSMELLTFKPDIFH------------------TSENSSSSPESSISQLFGTSFETTIRCTSCGHES 143 (295)
T ss_pred hHHHHHHHHHHHHHHhHHHHhcCccccc------------------ccccccCCCcchHHHHhCcceeeeecccccCCeE
Confidence 7999999999999999998765432110 0011112244569999999999999999999999
Q ss_pred ccccceEEEEeecCC---CCCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCCeEEEEEeeeeeecccce
Q 024898 82 ARDETFFDLSLDIEQ---NSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGR 158 (261)
Q Consensus 82 ~~~~~f~~l~l~i~~---~~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~vL~i~l~Rf~~~~~~~~ 158 (261)
.+.+....+.|..|+ ..++.+.|+.++..+.... .+|++|++......+..|.++|+||.|.++|...+ ..+
T Consensus 144 ~~~~~~~~~~l~yp~~~~~~tf~~~Le~sl~~e~~~~---a~C~~C~~~~~~~~~r~i~~LPpVL~In~~~~~~~--~~w 218 (295)
T PF13423_consen 144 VKESSTLVLDLPYPPSNSNVTFSQVLEHSLNREQQTR---AWCEKCNKYQPTEQRRTIRSLPPVLSINLNRYSEE--EFW 218 (295)
T ss_pred EeecceeeeeccCCCCCccchHHHHHHHHHhhccccc---ccccccccccceeeeeeccCCCcEEEEEccCCCcc--ccc
Confidence 999999899988877 4689999999999988886 79999999999999999999999999999999988 335
Q ss_pred eEecceEEeeCceeeCCCCCC----------CCCceeEEcEEEeeeecCCCCeeEEEEEecC----CcEEEeeCcee
Q 024898 159 YKKLSYRVVFPLELKLSNTAE----------DADIEYSLFAVVVHVGSGPNHGHYVSLVKSH----NHWLFFDDENV 221 (261)
Q Consensus 159 ~~K~~~~v~~p~~l~l~~~~~----------~~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~~----~~W~~~nD~~V 221 (261)
..|....+.+|..+.+..++. .+..+|+|.|+|+|.|.+.++|||++++|.. ++||+|||..|
T Consensus 219 ~~~~~~~~~ip~~i~~~~~~~~~~~~~~~~~~~~~~Y~L~~~V~~i~~~~~~~HlVs~vrv~~~~~~~W~lFNDflV 295 (295)
T PF13423_consen 219 PKKNWLKIWIPPSINLPHFIADDSQSDLEGESGIFKYELRSMVCHIGDSIESGHLVSLVRVGPSDDSQWYLFNDFLV 295 (295)
T ss_pred ccccCCceecceeeeccccccccccccccCCCCceEEEEEEEEEEecCCCCCCceEEEEEcCCCCCCcEEEECcEeC
Confidence 788899999999988877652 3467999999999999989999999999983 79999999876
No 36
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=7.3e-27 Score=192.89 Aligned_cols=240 Identities=25% Similarity=0.373 Sum_probs=186.9
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCC------------------CCCCcCCCCCCC------CCCCCccCCCcc
Q 024898 2 HQDAHEFLNFLLNELVDILEKEEAAKSDPESS------------------SPSEKTANGPTN------GLANGVRKEPLV 57 (261)
Q Consensus 2 QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~------------------~~~~~~~~~~~~------~~~~~~~~~~~~ 57 (261)
|+||.|||..+||.||+|+....+......+. ..+.......+. ...-........
T Consensus 144 qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~~~i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~ 223 (420)
T KOG1871|consen 144 QEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPRGLINNGNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVR 223 (420)
T ss_pred cccHHHHHHHHHhhhhHHHHhhhhhhcCCcccccccccccccccccccchhhcccccCchhhhcCCcccCccCCCCCccc
Confidence 89999999999999999997654432211110 001111111111 111223344567
Q ss_pred cceeeeeeEEEEEEEEeCCCCCccccccceEEEEeec--CCCCCHHHHHHhccCccccCCCCcccccccCCceeEEEEEE
Q 024898 58 TWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDI--EQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMK 135 (261)
Q Consensus 58 s~i~~lF~~~~~~~~~C~~C~~~~~~~~~f~~l~l~i--~~~~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~ 135 (261)
++|.++|+|+.+....-.. .+++...+||..+.|++ ..-.+++++|..+...|.+.+ +-.+.+..+.+.++..
T Consensus 224 spiS~ifgg~~rs~l~~~~-nkeS~tlqPF~tlqldiq~~~i~sv~~ales~~~re~lp~----~st~s~~eV~~s~q~~ 298 (420)
T KOG1871|consen 224 SPISEIFGGQLRSVLYQPS-NKESATLQPFFTLQLDIQSEKIHSVQDALESLVARESLPG----YSTKSGQEVEASSQTT 298 (420)
T ss_pred CcHHHhhccccccceeccc-cccccccCccceeeeeeeccccCCHHHHhhccChhhcccc----eecCCCCeechhhhhh
Confidence 8999999999999887665 45568889999999999 555799999999999998885 4444788899999999
Q ss_pred EeecCCeEEEEEeeeeeecccceeEecceEEeeCceeeCCCCC---------CCCCceeEEcEEEeeeecCCCCeeEEEE
Q 024898 136 IKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTA---------EDADIEYSLFAVVVHVGSGPNHGHYVSL 206 (261)
Q Consensus 136 i~~lP~vL~i~l~Rf~~~~~~~~~~K~~~~v~~p~~l~l~~~~---------~~~~~~Y~L~gvv~H~G~~~~~GHY~~~ 206 (261)
+.++|++|++|++||.+.. ++...|+.+.+++|-.+.+...+ ......|+|.++|.|+|.++..|||..-
T Consensus 299 leklp~vlilhlkrF~ye~-tgg~~k~~K~i~~~~~l~i~~~~~s~gvk~~~~~~~~~yks~~vvyhtgtsatvghYl~d 377 (420)
T KOG1871|consen 299 LEKLPPVLILHLKRFVYEK-TGGARKLGKKIEYPWTLKISKNCFSQGLKIRILIATRPYKSLAVVYHTGTSATVGHYLED 377 (420)
T ss_pred HhhcchhhhhhhhHHHHHh-ccchhhhchhhhccceeeechhhhccccchhhhccccccceEEEEEecccccccCceEEe
Confidence 9999999999999999976 45678999999998887665433 2346789999999999999999999999
Q ss_pred Eec--CCcEEEeeCceeeEeChHHHHhhhcCCCCCCCCCCceEEEEEEEeC
Q 024898 207 VKS--HNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESLG 255 (261)
Q Consensus 207 ~~~--~~~W~~~nD~~V~~~~~~~v~~~~~~~~~~~~~~~~~yil~Y~r~~ 255 (261)
+.+ .+.|+.+||..|.++..++|.+.-+ ..+||+|.|+|.+
T Consensus 378 v~~s~~~gw~rIDD~~i~~v~q~dv~~~t~--------~r~~yllyY~~~d 420 (420)
T KOG1871|consen 378 VSRSVPSGWQRIDDALILFVAQEDVEKVTG--------SRTPYLLYYIEAD 420 (420)
T ss_pred eeecccCceeEeccceeeeccHhhhccccC--------ccchheeEeeecC
Confidence 988 7899999999999999999987322 6799999999864
No 37
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.6e-27 Score=200.25 Aligned_cols=218 Identities=23% Similarity=0.259 Sum_probs=170.1
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCCCCCc
Q 024898 1 MHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETV 80 (261)
Q Consensus 1 ~QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~C~~~ 80 (261)
+||||.|++..++..++..+....... ...+.+..+|+.++.....|.+-...
T Consensus 196 ~qqda~ec~~~~m~~l~~~~~~~~~~~---------------------------~~~~~~d~~f~~~~~~t~~~~e~e~~ 248 (473)
T KOG1872|consen 196 MQQDAAECWMEEPGMLTEALTVATEAP---------------------------CLEAEAAAGFGAEFSTTMSCSEGEDE 248 (473)
T ss_pred HHHHHhHhHHHhhhheecccccccccc---------------------------chhHHHHHhhccccccceeeccCccc
Confidence 699999999999999988665432211 12355888999999999999887654
Q ss_pred ccc--ccceEEEEeecCCCC-CHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCCeEEEEEeeeeeecccc
Q 024898 81 TAR--DETFFDLSLDIEQNS-SITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLG 157 (261)
Q Consensus 81 ~~~--~~~f~~l~l~i~~~~-sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~vL~i~l~Rf~~~~~~~ 157 (261)
... .+.|..|.+-+.... .+...|..=++.++- -..+.-|....-.+...|.+||.+|+|++.||.+....+
T Consensus 249 ~~~~~~E~~~~L~c~i~~~~~~~k~Gl~~~~~e~~~-----K~s~~lgr~a~y~k~~~isrlP~ylTvq~vrf~~k~k~~ 323 (473)
T KOG1872|consen 249 GGGAGRELVDQLKCIINKTVHDMRFGLKSGLSEEIQ-----KISSILGRPAAYQKVMYISRLPEYLTVQEVRFFSKAKIM 323 (473)
T ss_pred ccccccccccccceEEeeeechhhhhhhhhhhhhhh-----ccCcccCCChHHHHHhHhhcCcccceEEEEEEEeccccc
Confidence 433 788888888886542 344444332222211 112222344444778889999999999999999999888
Q ss_pred eeEecceEEeeCceeeCCCCCC-----------------------------------------------------CCCce
Q 024898 158 RYKKLSYRVVFPLELKLSNTAE-----------------------------------------------------DADIE 184 (261)
Q Consensus 158 ~~~K~~~~v~~p~~l~l~~~~~-----------------------------------------------------~~~~~ 184 (261)
...|+.+.|.||..||....+. .....
T Consensus 324 ~~akil~~V~fP~~ld~~d~ct~el~~k~~~~r~k~r~~edkk~~~~~~~k~~~~~~~~~~~~~e~~~~~~~~~s~~~g~ 403 (473)
T KOG1872|consen 324 VVAKILNAVNFPKDLDQQDLCTPELKKKLLCRRKKHRKVEDKKKEEDVMPKVKGAQERLKEVPLEGMYNKSGGKSRNSGL 403 (473)
T ss_pred hHHHHHHhccChhhhhHHHhhCHHhhcCccchHHHHHHHHhcCCchhhcccccCcCcccccccccchhccccccccccce
Confidence 8899999999999999887662 11567
Q ss_pred eEEcEEEeeeecCCCCeeEEEEEec-CCcEEEeeCceeeEeChHHHHhhhcCCCCCCCCCCceEEEEEEEeC
Q 024898 185 YSLFAVVVHVGSGPNHGHYVSLVKS-HNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESLG 255 (261)
Q Consensus 185 Y~L~gvv~H~G~~~~~GHY~~~~~~-~~~W~~~nD~~V~~~~~~~v~~~~~~~~~~~~~~~~~yil~Y~r~~ 255 (261)
|+|+|||.|.|.+..+|||++|+|. .+.|++|||+.|+.+..+.+....||++ |..||||+|.-..
T Consensus 404 y~l~~vithkgrss~sghy~aw~r~s~~~w~~fdd~~vs~v~~e~i~~lsgggd-----~~~ayvllyk~~~ 470 (473)
T KOG1872|consen 404 YDLQLVITHKGRSSKSGHYVAWNRVSEDKWGHFDDDMVSFVLGETILSLSGGGD-----WHSAYVLLYKARV 470 (473)
T ss_pred eeeeEeeeccccccCCCcceEEEeccCCceeeccccccccccccceeeecCCCc-----cchhhheeecccc
Confidence 9999999999999999999999998 7899999999999999999999999987 8999999998643
No 38
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=99.77 E-value=5.8e-19 Score=145.87 Aligned_cols=196 Identities=24% Similarity=0.346 Sum_probs=146.2
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCC----C
Q 024898 2 HQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLR----C 77 (261)
Q Consensus 2 QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~----C 77 (261)
|-|+.|||+|||+.||.+++... ...|||+..|+|.++....-.. -
T Consensus 219 q~DpveFlswllntlhs~l~~~k------------------------------~~~SIi~~~fqG~~ri~k~~~~~~~~~ 268 (442)
T KOG2026|consen 219 QSDPVEFLSWLLNTLHSDLRGSK------------------------------KASSIIHKSFQGEVRIVKEKQGEASEN 268 (442)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCC------------------------------CchhHhhHhhcceEEeeeecccccccc
Confidence 78999999999999999887643 2458999999999977654322 1
Q ss_pred CCccccccceEEEEeecCCCC--------------CHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCCeE
Q 024898 78 ETVTARDETFFDLSLDIEQNS--------------SITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTL 143 (261)
Q Consensus 78 ~~~~~~~~~f~~l~l~i~~~~--------------sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~vL 143 (261)
........+|+.|+|++|+.+ .|.+.|..|.....-+ + .....+ ++..+.++|++|
T Consensus 269 ~~~~i~~~~Fl~LtLDLP~~plfkD~~e~niiPQV~l~~lL~Kf~g~t~~e----~-----~~~~~~-~rf~l~k~P~yl 338 (442)
T KOG2026|consen 269 ENKEISVMPFLYLTLDLPPPPLFKDVMEKNIIPQVALFDLLKKFDGETVTE----V-----VTPKLA-MRFRLTKLPRYL 338 (442)
T ss_pred ccceEEEEeeEEEEecCCCCCcccchhhhcccccchHHHHHHHhcCceeee----e-----cchhhh-hheeeecCCceE
Confidence 122345679999999998753 4566666553322111 1 111122 778899999999
Q ss_pred EEEEeeeeeecccceeEecceEEeeC-ceeeCCCCC------CCCCceeEEcEEEeeeecCCCCeeEEEEEec--CCcEE
Q 024898 144 VIHLKRFKYIEQLGRYKKLSYRVVFP-LELKLSNTA------EDADIEYSLFAVVVHVGSGPNHGHYVSLVKS--HNHWL 214 (261)
Q Consensus 144 ~i~l~Rf~~~~~~~~~~K~~~~v~~p-~~l~l~~~~------~~~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~--~~~W~ 214 (261)
|+|++||.-++. -..|+..-++|| ..+++.+.. ...-..|.|.|-++|. ..-|||...+++ .++||
T Consensus 339 ifh~~rF~kNn~--f~ekNpTl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~i~~---~e~~~~riqi~~~~s~kW~ 413 (442)
T KOG2026|consen 339 IFHMKRFKKNNF--FKEKNPTLVEFPYSEVDILHVLDRLKAVNHKVTQYSLVANAIHE---DEDGNFRIQIYDNSSEKWY 413 (442)
T ss_pred EEEeeeccccCc--ccccCCceeeccCCccchhhhhhhcccccCccccccchhhhhcC---cccCceEEEEEeCCCcceE
Confidence 999999996653 567999999999 445554432 2334789999999998 467999999998 78999
Q ss_pred EeeCceeeEeChHHHHhhhcCCCCCCCCCCceEEEEEEEe
Q 024898 215 FFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESL 254 (261)
Q Consensus 215 ~~nD~~V~~~~~~~v~~~~~~~~~~~~~~~~~yil~Y~r~ 254 (261)
..+|-.|++...+.|. -..+||-+|++.
T Consensus 414 eiqdl~v~e~~~qmi~------------L~Es~iQiwe~~ 441 (442)
T KOG2026|consen 414 EIQDLHVTERLPQMIF------------LKESFIQIWEKQ 441 (442)
T ss_pred EecccchhhhhhHHHH------------HHHHHHHHHhcc
Confidence 9999999999988886 567888888764
No 39
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.68 E-value=6.5e-17 Score=146.12 Aligned_cols=187 Identities=20% Similarity=0.272 Sum_probs=141.5
Q ss_pred CcccceeeeeeEEEEEEEEeCCCCCccccccceEEEEeecCCC---------CCHHHHHHhccCccccCCCCcccccccC
Q 024898 55 PLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQN---------SSITSCLKNFSSTETLNAEDKFFCDKCC 125 (261)
Q Consensus 55 ~~~s~i~~lF~~~~~~~~~C~~C~~~~~~~~~f~~l~l~i~~~---------~sl~~~l~~~~~~e~~~~~~~~~C~~C~ 125 (261)
.....+.+.|+.+++.+..|..|+..+.+......+.+..|.. ..+.+.|+.......- -+-+|+.|+
T Consensus 632 n~~~~l~q~F~~~~e~~~~Cg~C~~~~~~~k~l~~~~lsyp~~~~id~~~~~~~F~~iL~R~l~l~kn---~~~~C~~C~ 708 (1118)
T KOG1275|consen 632 NYAPVLQQSFCQEIEKSLRCGECGDEKQKSKSLLRKVLSYPNVLLIDTLAKSNNFVEILKRSLSLFKN---KQAWCETCT 708 (1118)
T ss_pred cchhHHHHHhhhHHHHhhhcccccchhhhhhhhhheeecCCCccchhhcccccchHHHhhhhhhcccc---ccccccccc
Confidence 3456899999999999999999999887666666666666542 2344444432211111 115899999
Q ss_pred CceeEEEEEEEeecCCeEEEEEeeeeeecccceeE--ecceEEeeCceeeCCCCC---------------------CCCC
Q 024898 126 SLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYK--KLSYRVVFPLELKLSNTA---------------------EDAD 182 (261)
Q Consensus 126 ~~~~~~~~~~i~~lP~vL~i~l~Rf~~~~~~~~~~--K~~~~v~~p~~l~l~~~~---------------------~~~~ 182 (261)
+..+...+..+..+|.+|.|...-+.......+.. |....|.+|+++.|.... +..-
T Consensus 709 k~ep~~q~~~vr~LPd~L~in~~~~~~~~~~~~a~q~~~~~~vWLP~~~~~~~~k~~~~~v~~~s~~~~~~~~~~d~~~~ 788 (1118)
T KOG1275|consen 709 KPEPTSQKKNVRSLPDCLSINTCLNVHELVDFWARQNKLLEDVWLPEWFHMIISKNKAQLVSTISDLDVSPLPDYDEPSA 788 (1118)
T ss_pred CCCCcccccccccCcceeeeeeeccchhhhhhHHHhhccccccccchheeEEEecccceeeeeeccccCCCCccccCCce
Confidence 99999999999999999999988776544333333 446677888887665422 1224
Q ss_pred ceeEEcEEEeeeecCCCCeeEEEEEec----------CCcEEEeeCceeeEeChHHHHhhhcCCCCCCCCCCceEEEEE
Q 024898 183 IEYSLFAVVVHVGSGPNHGHYVSLVKS----------HNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFY 251 (261)
Q Consensus 183 ~~Y~L~gvv~H~G~~~~~GHY~~~~~~----------~~~W~~~nD~~V~~~~~~~v~~~~~~~~~~~~~~~~~yil~Y 251 (261)
..|+|.|+|+|.|.+.+.+|++++++- +++||+|||..|+++++++++.+ ..+|+.|-||+|
T Consensus 789 ~vYeL~a~V~~I~d~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ite~EAl~~-------~~~WKvP~Il~Y 860 (1118)
T KOG1275|consen 789 VVYELDAMVHAIGDNENEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSEITEEEALHF-------DGPWKVPAILYY 860 (1118)
T ss_pred EEEEeeeEEEEeccCCCccceEEEEEccCcccccCcCcceeEEEcceeeeeCChHHheEe-------ccCccCcEEEEE
Confidence 789999999999998899999999983 46999999999999999999855 444999999999
No 40
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1.8e-09 Score=98.23 Aligned_cols=223 Identities=18% Similarity=0.209 Sum_probs=133.6
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCCCCCcccc
Q 024898 4 DAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETVTAR 83 (261)
Q Consensus 4 Da~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~C~~~~~~ 83 (261)
++.++|..++..|+++.+.......... +.- +.+. .|. ..-..++++++|+.+......|..|+.....
T Consensus 551 ~~S~lL~~ll~~l~~~~~~ss~~~~v~~----ail---e~~~--~Wk--~~er~~l~~~lf~l~~~e~~Sc~~cr~~~n~ 619 (806)
T KOG1887|consen 551 VYSELLSDLLLSLEEVHNASSSAADVVV----AIL---EFWQ--CWK--NPERESLVNRLFTLEEKERMSCSKCRRDLNY 619 (806)
T ss_pred hHHHHHHHHHhhhHHHhhhcchhhHHHH----HHH---hccc--ccc--cHHHHHHHHhhhhhhhhhhccccccccCCCC
Confidence 5788999999999887765422111000 000 0000 111 1113467899999999999999999886654
Q ss_pred ccceEEEEeecCC-----------CCCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCCeEEEEEeeeee
Q 024898 84 DETFFDLSLDIEQ-----------NSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKY 152 (261)
Q Consensus 84 ~~~f~~l~l~i~~-----------~~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~vL~i~l~Rf~~ 152 (261)
.+ ...+.+.+.. +.++.+.|+.......+..+ ..-..||+.. ...+.|.+.|+|++|.+.+=.
T Consensus 620 pe-qsS~~~~~~a~slr~~k~a~~n~~f~~ilk~i~m~~~m~cD--~~~gGCgk~n--~v~h~is~~P~vftIvlewEk- 693 (806)
T KOG1887|consen 620 PE-QSSYGIVIAADSLRQLKCAFQNITFEDILKNIRMNDKMLCD--KETGGCGKAN--LVHHILSPCPPVFTIVLEWEK- 693 (806)
T ss_pred cc-hhhhhhhccchhhhhHHHHhhhhhHHHHHHHhhhhhhhccc--ccCCCCcchh--hhhhhcCCCCCeeEeeeehhc-
Confidence 42 2222222221 24566666653222223221 1223466543 556778899999999654322
Q ss_pred ecccceeEecceEEeeCceeeCCCC---CCCCCceeEEcEEEeeeecCCCCeeEEEEEecCCcEE--EeeCceeeEe-Ch
Q 024898 153 IEQLGRYKKLSYRVVFPLELKLSNT---AEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWL--FFDDENVEMI-DE 226 (261)
Q Consensus 153 ~~~~~~~~K~~~~v~~p~~l~l~~~---~~~~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~~~~W~--~~nD~~V~~~-~~ 226 (261)
........ .....+...+|+... ...+...|+|+++|..... .++|.|++...++|+ ..+|..+..+ +|
T Consensus 694 ~ETe~eI~--~T~~aL~teidis~~y~~g~ep~t~yrLVSmv~~~e~---~~~~~C~Aye~Nrwvs~r~~~~~~e~iG~w 768 (806)
T KOG1887|consen 694 SETEKEIS--ETTKALATEIDISRLYREGLEPNTKYRLVSMVGNHEE---GEEYICFAYEPNRWVSLRHEDSQGEVVGDW 768 (806)
T ss_pred ccchHHHH--HHHHHHHhhhhHHHHhhhccCcCceeEEEEEeeeccc---cceEEEeeccCCcchhhHHHHHHhhhccch
Confidence 11111100 001112223444432 2356889999999987743 579999999999999 9999998887 79
Q ss_pred HHHHhhhcCCCCCCCCCCceEEEEEEEe
Q 024898 227 SAVQTFFGSAQEYSSNTDHGYILFYESL 254 (261)
Q Consensus 227 ~~v~~~~~~~~~~~~~~~~~yil~Y~r~ 254 (261)
.+|..++|.. .-.+-||||+..
T Consensus 769 ~dvvr~c~e~------~vrpeil~ye~~ 790 (806)
T KOG1887|consen 769 KDVVRFCGER------KVRPEILFYEAQ 790 (806)
T ss_pred HHHHHHHhcc------cccHHHHHHHHH
Confidence 9999888764 456888888763
No 41
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=98.33 E-value=3.7e-07 Score=72.84 Aligned_cols=131 Identities=21% Similarity=0.366 Sum_probs=85.1
Q ss_pred cccceeeeeeEEEEEEEEeCCCCCccccccceE--EEEeecCCCCCHHHHHHhccCccccCCCCcccccccCCceeEEEE
Q 024898 56 LVTWVHKNFQGILTNETRCLRCETVTARDETFF--DLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKR 133 (261)
Q Consensus 56 ~~s~i~~lF~~~~~~~~~C~~C~~~~~~~~~f~--~l~l~i~~~~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~ 133 (261)
....+.++|.....=...|..||......-.-. .++--+|.-..|.- .. --.|.+|+.+. ..++
T Consensus 119 ~d~~~E~lF~~sf~WeFeC~~Cg~~~~~R~~K~L~TFtnv~pdwhPLnA----------~h---~~pCn~C~~ks-Q~rk 184 (275)
T PF15499_consen 119 LDPWIEKLFLYSFSWEFECSQCGHKYQNRCTKTLVTFTNVIPDWHPLNA----------VH---FGPCNSCNSKS-QRRK 184 (275)
T ss_pred cchHHHhHhheeeEEEEEccccCChhhhhheeeecccCCCCCCCCcccc----------cc---cCCCcccCChH-HhHh
Confidence 345788999999999999999998653321111 11111222111111 11 13699998763 4677
Q ss_pred EEEeecCCeEEEEEeeeeeecccceeEecceEEeeCceeeCCCCC-CCCCceeEEcEEEeeeecCCCCeeEEEEEec-CC
Q 024898 134 MKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTA-EDADIEYSLFAVVVHVGSGPNHGHYVSLVKS-HN 211 (261)
Q Consensus 134 ~~i~~lP~vL~i~l~Rf~~~~~~~~~~K~~~~v~~p~~l~l~~~~-~~~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~-~~ 211 (261)
+.+.++|++|++|+ .. | +|.. |+..+. ...+..|++.+||.+.-. --|+++|+++ +|
T Consensus 185 Mvlekv~~vfmLHF---Ve----G----------LP~n-dl~~ysF~feg~~Y~Vt~VIQY~~~---~~HFvtWi~~~dG 243 (275)
T PF15499_consen 185 MVLEKVPPVFMLHF---VE----G----------LPHN-DLQHYSFHFEGCLYQVTSVIQYQAN---LNHFVTWIRDSDG 243 (275)
T ss_pred hhhhcCchhhhhhh---hc----c----------CCcc-CCCccceeecCeeEEEEEEEEEecc---CceeEEEEEcCCC
Confidence 88999999999995 21 1 1111 122111 124789999999999853 4599999999 88
Q ss_pred cEEEeeCcee
Q 024898 212 HWLFFDDENV 221 (261)
Q Consensus 212 ~W~~~nD~~V 221 (261)
.|..+||-+=
T Consensus 244 sWLecDDLkg 253 (275)
T PF15499_consen 244 SWLECDDLKG 253 (275)
T ss_pred CeEeeccCCC
Confidence 9999999864
No 42
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=91.59 E-value=0.26 Score=37.87 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=23.5
Q ss_pred CCeeEEEEEecCCcEEEeeCceeeEeChH
Q 024898 199 NHGHYVSLVKSHNHWLFFDDENVEMIDES 227 (261)
Q Consensus 199 ~~GHY~~~~~~~~~W~~~nD~~V~~~~~~ 227 (261)
..||.+.+.+..+.||.+||+.+.+-++.
T Consensus 137 g~~Havfa~~ts~gWy~iDDe~~y~~tPd 165 (193)
T PF05408_consen 137 GQEHAVFACVTSDGWYAIDDEDFYPWTPD 165 (193)
T ss_dssp STTEEEEEEEETTCEEEEETTEEEE----
T ss_pred CCcceEEEEEeeCcEEEecCCeeeeCCCC
Confidence 46899999999999999999999998764
No 43
>PF14353 CpXC: CpXC protein
Probab=91.11 E-value=0.36 Score=35.29 Aligned_cols=50 Identities=12% Similarity=0.362 Sum_probs=29.5
Q ss_pred EEeCCCCCccccccceEEEEeecCCCCCHHHHHHhccCccccCCCCcccccccCCceeEE
Q 024898 72 TRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQ 131 (261)
Q Consensus 72 ~~C~~C~~~~~~~~~f~~l~l~i~~~~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~ 131 (261)
++|+.|+...... .+ -.++....+.+.+.| +..+... +.|+.||......
T Consensus 2 itCP~C~~~~~~~-v~--~~I~~~~~p~l~e~i---l~g~l~~----~~CP~Cg~~~~~~ 51 (128)
T PF14353_consen 2 ITCPHCGHEFEFE-VW--TSINADEDPELKEKI---LDGSLFS----FTCPSCGHKFRLE 51 (128)
T ss_pred cCCCCCCCeeEEE-EE--eEEcCcCCHHHHHHH---HcCCcCE----EECCCCCCceecC
Confidence 6899999855322 22 233443344455554 3444444 8999999876544
No 44
>PF03292 Pox_P4B: Poxvirus P4B major core protein; InterPro: IPR004972 This family is the Poxvirus P4B major core protein. It is a precursor for one of the two most abundant structural components of the virion (major core proteins 4A and 4B).
Probab=79.41 E-value=3.5 Score=37.80 Aligned_cols=78 Identities=14% Similarity=0.082 Sum_probs=46.5
Q ss_pred CeEEEEEeeeeeecc-cc------eeEecceEEeeCceeeCCCCCCCCCceeEEcEEEeeee-cCC----------CCee
Q 024898 141 HTLVIHLKRFKYIEQ-LG------RYKKLSYRVVFPLELKLSNTAEDADIEYSLFAVVVHVG-SGP----------NHGH 202 (261)
Q Consensus 141 ~vL~i~l~Rf~~~~~-~~------~~~K~~~~v~~p~~l~l~~~~~~~~~~Y~L~gvv~H~G-~~~----------~~GH 202 (261)
-+|++.+.|-+.... .| +..-++.++++.. .+.-.+..|+|.+.|||.- ... -.||
T Consensus 479 GvLIfyVeRRq~k~~~~Gec~tg~rs~ind~pidv~q------~i~ingimyrL~SAVCYK~~d~~~d~C~~~diflkG~ 552 (666)
T PF03292_consen 479 GVLIFYVERRQNKNTFSGECYTGFRSRINDSPIDVSQ------EITINGIMYRLKSAVCYKIGDQFFDGCNGNDIFLKGY 552 (666)
T ss_pred ceEEEEEeehhccceeccccccchhhhhcCccccccc------ceeecceeeeeehhheeeccccccCCCCCCcceecee
Confidence 689999998754221 11 1122333444433 3334589999999999953 211 1266
Q ss_pred EEEEEecCCcEEEeeCceeeEeC
Q 024898 203 YVSLVKSHNHWLFFDDENVEMID 225 (261)
Q Consensus 203 Y~~~~~~~~~W~~~nD~~V~~~~ 225 (261)
| +.++.+..|+++|-..+-..+
T Consensus 553 y-tIlfTe~Gpw~YDP~s~~s~~ 574 (666)
T PF03292_consen 553 Y-TILFTEMGPWMYDPLSIFSKN 574 (666)
T ss_pred E-EEEEecCCceeeCchhhcCcc
Confidence 6 566777778888876665443
No 45
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=78.56 E-value=2.5 Score=19.50 Aligned_cols=15 Identities=27% Similarity=0.935 Sum_probs=12.0
Q ss_pred EEEecCCcEEEeeCc
Q 024898 205 SLVKSHNHWLFFDDE 219 (261)
Q Consensus 205 ~~~~~~~~W~~~nD~ 219 (261)
.+++.++.||.|+++
T Consensus 2 ~W~~~~~~wYy~~~~ 16 (19)
T PF01473_consen 2 GWVQDNGNWYYFDSD 16 (19)
T ss_dssp EEEEETTEEEEETTT
T ss_pred cCEEECCEEEEeCCC
Confidence 467778999999875
No 46
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=77.49 E-value=2.1 Score=26.81 Aligned_cols=35 Identities=17% Similarity=0.333 Sum_probs=26.1
Q ss_pred cccccccCCceeEEEEEEE--eecCCeEEEEEeeeee
Q 024898 118 KFFCDKCCSLQEAQKRMKI--KKSPHTLVIHLKRFKY 152 (261)
Q Consensus 118 ~~~C~~C~~~~~~~~~~~i--~~lP~vL~i~l~Rf~~ 152 (261)
.+.|++|+...-..++... ..+.+++=||.++|-.
T Consensus 4 ~~kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~~ 40 (68)
T COG3478 4 AFKCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFIV 40 (68)
T ss_pred cccCCCcCCcchhhceeeccCCCcceeEEecccEEEE
Confidence 4679999987665555544 3678899999998864
No 47
>PF02099 Josephin: Josephin; InterPro: IPR006155 Human genes containing triplet repeats can markedly expand in length, leading to neuropsychiatric disease. Expansion of triplet repeats explains the phenomenon of anticipation, i.e. the increasing severity or earlier age of onset in successive generations in a pedigree []. A novel gene containing CAG repeats has been identified and mapped to chromosome 14q32.1, the genetic locus for Machado-Joseph disease (MJD). Normally, the gene contains 13-36 CAG repeats, but most clinically diagnosed patients and all affected members of a family with the clinical and pathological diagnosis of MJD show expansion of the repeat number, from 68-79 []. Similar abnormalities in related genes may give rise to diseases similar to MJD. MJD is a neurodegenerative disorder characterised by cerebellar ataxia, pyramidal and extra-pyramidal signs, peripheral nerve palsy, external ophtalmoplegia, facial and lingual fasciculation and bulging. The disease is autosomal dominant, with late onset of symptoms, generally after the fourth decade.; GO: 0008242 omega peptidase activity; PDB: 3O65_G 1YZB_A 2JRI_A 2DOS_A 2AGA_A.
Probab=72.52 E-value=5.4 Score=30.34 Aligned_cols=41 Identities=17% Similarity=0.379 Sum_probs=30.4
Q ss_pred EEcEEEeeeecCCCCeeEEEEEecCCcEEEeeCceeeE--eChHHHHh
Q 024898 186 SLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEM--IDESAVQT 231 (261)
Q Consensus 186 ~L~gvv~H~G~~~~~GHY~~~~~~~~~W~~~nD~~V~~--~~~~~v~~ 231 (261)
...|+|++.+. |++|..|-++.||-+|=..-.| ++..++..
T Consensus 98 ~~~gfI~N~~~-----HWf~iRki~~~wyNLDS~l~~P~~i~~~~l~~ 140 (157)
T PF02099_consen 98 NEFGFICNLSR-----HWFAIRKIGGQWYNLDSKLKEPELISDFYLSA 140 (157)
T ss_dssp CSSEEEEECTT-----EEEEEEEETTEEEEECTTTSS-EEE-HHHHHH
T ss_pred hceEEEeccCc-----ceEEEEeeCCeeEeccCCCCCCcccCHHHHHH
Confidence 34899999666 9999999999999999765544 45555543
No 48
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=72.38 E-value=5.1 Score=30.60 Aligned_cols=99 Identities=13% Similarity=0.162 Sum_probs=45.7
Q ss_pred EEeCCCCCccccccceEEEEeecCCCCCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCC--eEEEEEee
Q 024898 72 TRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPH--TLVIHLKR 149 (261)
Q Consensus 72 ~~C~~C~~~~~~~~~f~~l~l~i~~~~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~--vL~i~l~R 149 (261)
..|+.|+..... ..+..++| ||..-.+.. +.|+.||-+..-.+. .=..-|. .+++.+.-
T Consensus 2 s~Cp~C~~~~~~----~~~~~~IP-----------~F~evii~s---f~C~~CGyk~~ev~~-~~~~~~~G~r~tl~V~~ 62 (161)
T PF03367_consen 2 SLCPNCGENGTT----RILLTDIP-----------YFKEVIIMS---FECEHCGYKNNEVKS-GGQIQPKGVRITLKVES 62 (161)
T ss_dssp EE-TTTSSCCEE----EEEEEEET-----------TTEEEEEEE---EE-TTT--EEEEEEE-ECSS-SSEEEEEEEE-S
T ss_pred CcCCCCCCCcEE----EEEEEcCC-----------CCceEEEEE---eECCCCCCEeeeEEE-CccCCCCceEEEEEECC
Confidence 579999975432 23556666 344444543 799999977533322 1123366 56666532
Q ss_pred eeeecccceeEecceEEeeCce-eeCCCCCCCCCceeEEcEE
Q 024898 150 FKYIEQLGRYKKLSYRVVFPLE-LKLSNTAEDADIEYSLFAV 190 (261)
Q Consensus 150 f~~~~~~~~~~K~~~~v~~p~~-l~l~~~~~~~~~~Y~L~gv 190 (261)
- .|-...-.+--...|.+|+- |.+.|.....+....+.|+
T Consensus 63 ~-~DL~r~VvkS~~ati~IPEl~~ei~P~~~~~g~iTTVEGl 103 (161)
T PF03367_consen 63 P-EDLNRQVVKSDTATIEIPELGLEIEPGPSQGGFITTVEGL 103 (161)
T ss_dssp H-HHHC-EEEE-TT-EEEEGGGTEEE--TTTT-SEEEEHHHH
T ss_pred H-HHhcceEEecCcEEEEEeecceEEccCCCCCceEEehHHH
Confidence 1 11222234555678889865 6665443333333333333
No 49
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=66.99 E-value=9.7 Score=23.11 Aligned_cols=11 Identities=27% Similarity=0.739 Sum_probs=9.0
Q ss_pred ccccccCCcee
Q 024898 119 FFCDKCCSLQE 129 (261)
Q Consensus 119 ~~C~~C~~~~~ 129 (261)
.+|++|++.+.
T Consensus 29 lyCpKCK~Etl 39 (55)
T PF14205_consen 29 LYCPKCKQETL 39 (55)
T ss_pred ccCCCCCceEE
Confidence 68999988754
No 50
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=64.68 E-value=28 Score=27.46 Aligned_cols=86 Identities=14% Similarity=0.197 Sum_probs=44.2
Q ss_pred EEeCCCCCccccccceEEEEee-cCCCCCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCCeEEEEEeee
Q 024898 72 TRCLRCETVTARDETFFDLSLD-IEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRF 150 (261)
Q Consensus 72 ~~C~~C~~~~~~~~~f~~l~l~-i~~~~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~vL~i~l~Rf 150 (261)
+.|+.|+..- ....+... +| ||..-.+.. +.|+.||-...-.+... ..-|.-+++.+.--
T Consensus 1 ~~Cp~C~~~~----~~~~~~~~~IP-----------~F~evii~s---f~C~~CGyr~~ev~~~g-~~~p~r~~l~V~~~ 61 (192)
T TIGR00310 1 IDCPSCGGEC----ETVMKTVNDIP-----------YFGEVLETS---TICEHCGYRSNDVKTLG-AKEPKRYILKIDDE 61 (192)
T ss_pred CcCCCCCCCC----EEEEEEEcCCC-----------CcceEEEEE---EECCCCCCccceeEECC-CCCCEEEEEEECCh
Confidence 3699998642 12234444 55 244444433 89999997743332211 12244344433211
Q ss_pred eeecccceeEecceEEeeCce-eeCCCC
Q 024898 151 KYIEQLGRYKKLSYRVVFPLE-LKLSNT 177 (261)
Q Consensus 151 ~~~~~~~~~~K~~~~v~~p~~-l~l~~~ 177 (261)
.|-...-.+.-...|.+|+- |.+.+-
T Consensus 62 -~DL~r~VvkS~tati~IPEl~lei~pg 88 (192)
T TIGR00310 62 -ADLNRRVVKSESATIRIPELGLDIEPG 88 (192)
T ss_pred -hcccceEEEcCCcEEEccceEEEECCC
Confidence 11222234556677888875 666643
No 51
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=56.87 E-value=11 Score=23.90 Aligned_cols=33 Identities=15% Similarity=0.354 Sum_probs=17.9
Q ss_pred ccccccCCceeEEEEEEE--eecCCeEEEEEeeee
Q 024898 119 FFCDKCCSLQEAQKRMKI--KKSPHTLVIHLKRFK 151 (261)
Q Consensus 119 ~~C~~C~~~~~~~~~~~i--~~lP~vL~i~l~Rf~ 151 (261)
|.|++|+...-...+... ..+-.++-|+.++|.
T Consensus 1 y~C~KCg~~~~e~~~v~~tgg~~skiFdvq~~~f~ 35 (64)
T PF09855_consen 1 YKCPKCGNEEYESGEVRATGGGLSKIFDVQNKKFT 35 (64)
T ss_pred CCCCCCCCcceecceEEccCCeeEEEEEecCcEEE
Confidence 579999886444333332 123344555555554
No 52
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=56.29 E-value=43 Score=25.52 Aligned_cols=83 Identities=14% Similarity=0.174 Sum_probs=44.0
Q ss_pred EeCCCCCccccccceEEEEeecCCCCCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCC--eEEEEEeee
Q 024898 73 RCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPH--TLVIHLKRF 150 (261)
Q Consensus 73 ~C~~C~~~~~~~~~f~~l~l~i~~~~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~--vL~i~l~Rf 150 (261)
.|+.|+.... ...+...+| ||..-.+.. +.|+.||-+..-.+ ..=..-|. -+++.+.--
T Consensus 2 ~Cp~C~~~~~----~~~~~~~IP-----------~F~evii~s---f~C~~CGyk~~ev~-~~~~~~p~G~r~~l~V~~~ 62 (160)
T smart00709 2 DCPSCGGNGT----TRMLLTSIP-----------YFREVIIMS---FECEHCGYRNNEVK-SGGAIEPKGTRITLKVESP 62 (160)
T ss_pred cCCCCCCCCE----EEEEEecCC-----------CcceEEEEE---EECCCCCCccceEE-ECcccCCCceEEEEEECCh
Confidence 4999986432 345555665 244444432 89999997743322 11122355 556655321
Q ss_pred eeecccceeEecceEEeeCce-eeCC
Q 024898 151 KYIEQLGRYKKLSYRVVFPLE-LKLS 175 (261)
Q Consensus 151 ~~~~~~~~~~K~~~~v~~p~~-l~l~ 175 (261)
.|-...-.+-....|.+|+- |.+.
T Consensus 63 -~DL~r~VvkS~ta~i~IPEl~~ei~ 87 (160)
T smart00709 63 -EDLNRDVVKSETATISIPELDLEIP 87 (160)
T ss_pred -hhccceEEEcCCcEEEeeeeeEEec
Confidence 11122234555667888865 5554
No 53
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=50.57 E-value=24 Score=21.83 Aligned_cols=21 Identities=19% Similarity=0.147 Sum_probs=18.3
Q ss_pred CCCeeEEEEEecCCcEEEeeC
Q 024898 198 PNHGHYVSLVKSHNHWLFFDD 218 (261)
Q Consensus 198 ~~~GHY~~~~~~~~~W~~~nD 218 (261)
....|.+.-++.+++|+.+|=
T Consensus 46 ~~~~H~W~ev~~~~~W~~~D~ 66 (68)
T smart00460 46 IWEAHAWAEVYLEGGWVPVDP 66 (68)
T ss_pred CCCcEEEEEEEECCCeEEEeC
Confidence 467899999999999999983
No 54
>cd01269 PLX Pollux (PLX) Phosphotyrosine-binding (PTB) domain. Pollux (PLX) Phosphotyrosine-binding (PTB) domain. PLX is calmodulin-binding protein containing a TBC domain, which is conserved from yeast to man, but it only has an N-terminal PTB domain in mammals. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=48.34 E-value=67 Score=23.34 Aligned_cols=63 Identities=13% Similarity=0.173 Sum_probs=36.7
Q ss_pred EEEEEeeeeeecccceeEecceEEeeCceeeCCCCCCCCCceeEEcEEEeeeecCCCCeeEEEEEec
Q 024898 143 LVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAEDADIEYSLFAVVVHVGSGPNHGHYVSLVKS 209 (261)
Q Consensus 143 L~i~l~Rf~~~~~~~~~~K~~~~v~~p~~l~l~~~~~~~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~ 209 (261)
..+++.|+...--....+++...-.|.. -.++..+...-+..|+|+.......+-||+|||..
T Consensus 45 m~~~I~~~~v~lispdtK~vl~~k~f~d----ISsC~qg~~~~dhFgFIcrEs~~~~~~~f~CyVFq 107 (129)
T cd01269 45 MLFQVGRFEINLISPDTKSVVLEKNFKD----ISSCSQGIKHVDHFGFICRESPEPGLSQYICYVFQ 107 (129)
T ss_pred EEEEEeccceEEEcCCcceEEEecCccc----cchhhcCCCCcceEEEEeccCCCCCcceEEEEEEE
Confidence 4556666654322222233333222222 12344455666789999999886667899999974
No 55
>cd02418 Peptidase_C39B A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=47.47 E-value=1e+02 Score=21.97 Aligned_cols=45 Identities=22% Similarity=0.305 Sum_probs=30.0
Q ss_pred CCCeeEEEEEecCCcEEEeeCc--eeeEeChHHHHhhhcCCCCCCCCCCceEEEEEEE
Q 024898 198 PNHGHYVSLVKSHNHWLFFDDE--NVEMIDESAVQTFFGSAQEYSSNTDHGYILFYES 253 (261)
Q Consensus 198 ~~~GHY~~~~~~~~~W~~~nD~--~V~~~~~~~v~~~~~~~~~~~~~~~~~yil~Y~r 253 (261)
...|||+-..+.++.++.+.|- ....++.++..+. ..+++|+-++
T Consensus 87 ~~~~~~~Vl~~~~~~~~~i~dp~~~~~~~~~~ef~~~-----------w~g~~l~~~~ 133 (136)
T cd02418 87 WKLNHYVVVYKIKKKKILIADPAVGITKISKEEFEKE-----------WTGVALFLEP 133 (136)
T ss_pred CCCCeEEEEEEEcCCEEEEECCCCCCEEeeHHHHHhh-----------CeEEEEEEec
Confidence 4668999999887777777664 2345677777653 3456666554
No 56
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=47.30 E-value=73 Score=24.17 Aligned_cols=29 Identities=14% Similarity=0.335 Sum_probs=20.0
Q ss_pred EEEeCCCCCccccccceEEEEeecCCCCCHHHHHHhccCccccCCCCcccccccCCc
Q 024898 71 ETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSL 127 (261)
Q Consensus 71 ~~~C~~C~~~~~~~~~f~~l~l~i~~~~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~ 127 (261)
-..|+.|+... |+.++++. + +.|+.||..
T Consensus 109 ~Y~Cp~c~~r~-----------------tf~eA~~~--------~---F~Cp~Cg~~ 137 (158)
T TIGR00373 109 FFICPNMCVRF-----------------TFNEAMEL--------N---FTCPRCGAM 137 (158)
T ss_pred eEECCCCCcEe-----------------eHHHHHHc--------C---CcCCCCCCE
Confidence 46788888532 56667752 1 899999875
No 57
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=46.05 E-value=40 Score=28.91 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=15.1
Q ss_pred EEEeeeecCCCCeeEEEEEecCC
Q 024898 189 AVVVHVGSGPNHGHYVSLVKSHN 211 (261)
Q Consensus 189 gvv~H~G~~~~~GHY~~~~~~~~ 211 (261)
+.++..|. .++|||+ +.+.++
T Consensus 263 ~~~vF~G~-~~~GHYt-~~~~~~ 283 (320)
T PF08715_consen 263 CYAVFTGS-TDSGHYT-HDVAGK 283 (320)
T ss_dssp ESEEEESC-TTTCEEE-EEEESS
T ss_pred eEEEEEcC-CCccceE-EEccCc
Confidence 45557897 8999999 665433
No 58
>KOG2935 consensus Ataxin 3/Josephin [General function prediction only]
Probab=45.20 E-value=2.8 Score=34.04 Aligned_cols=59 Identities=14% Similarity=0.292 Sum_probs=38.9
Q ss_pred cEEEeeeecCCCCeeEEEEEecCCcEEEeeCceeeEe--ChHHHHhhhcCCCCCCCCCCceEEEEEEEeCCC
Q 024898 188 FAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMI--DESAVQTFFGSAQEYSSNTDHGYILFYESLGAG 257 (261)
Q Consensus 188 ~gvv~H~G~~~~~GHY~~~~~~~~~W~~~nD~~V~~~--~~~~v~~~~~~~~~~~~~~~~~yil~Y~r~~~~ 257 (261)
.|+|||.-. |+++..|-+++||-+|--.--|- +...+..+...- ...+|-+|-.+-+.+
T Consensus 104 rafICnl~e-----HWF~iRKfg~qWfnlnSllagPellSdtyls~FL~ql------q~egySIFVVkG~lP 164 (315)
T KOG2935|consen 104 RAFICNLKE-----HWFTIRKFGKQWFNLNSLLAGPELLSDTYLSAFLAQL------QQEGYSIFVVKGDLP 164 (315)
T ss_pred hhhhhcchh-----hhhhHhhhcchhccchhhhcchHHHHHHHHHHHHHHH------HhCCeeEEEEecCCC
Confidence 688999987 99999999999999987554332 222222222221 467888777664433
No 59
>PF03412 Peptidase_C39: Peptidase C39 family This is family C39 in the peptidase classification. ; InterPro: IPR005074 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of sequences defined by this cysteine peptidase domain belong to the MEROPS peptidase family C39 (clan CA). It is found in a wide range of ABC transporters, which are maturation proteases for peptide bacteriocins, the proteolytic domain residing in the N-terminal region of the protein []. A number of the proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Lantibiotic and non-lantibiotic bacteriocins are synthesised as precursor peptides containing N-terminal extensions (leader peptides) which are cleaved off during maturation. Most non-lantibiotics and also some lantibiotics have leader peptides of the so-called double-glycine type. These leader peptides share consensus sequences and also a common processing site with two conserved glycine residues in positions -1 and -2. The double- glycine-type leader peptides are unrelated to the N-terminal signal sequences which direct proteins across the cytoplasmic membrane via the sec pathway. Their processing sites are also different from typical signal peptidase cleavage sites, suggesting that a different processing enzyme is involved. ; GO: 0005524 ATP binding, 0008233 peptidase activity, 0006508 proteolysis, 0016021 integral to membrane; PDB: 3K8U_A 3B79_A.
Probab=40.08 E-value=1.3e+02 Score=21.24 Aligned_cols=45 Identities=16% Similarity=0.287 Sum_probs=29.8
Q ss_pred CCeeEEEEEecCCcEEEeeCc--eeeEeChHHHHhhhcCCCCCCCCCCceEEEEEEEe
Q 024898 199 NHGHYVSLVKSHNHWLFFDDE--NVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESL 254 (261)
Q Consensus 199 ~~GHY~~~~~~~~~W~~~nD~--~V~~~~~~~v~~~~~~~~~~~~~~~~~yil~Y~r~ 254 (261)
..|||+-..+.++..+.+-|- ....++.++..+. .+.++|+-++.
T Consensus 83 ~~~h~vVi~~~~~~~~~i~dP~~g~~~~~~~~f~~~-----------w~G~~l~~~~~ 129 (131)
T PF03412_consen 83 KDGHFVVIYKIDDGRVLIYDPKKGKIKLSKEEFEEI-----------WTGEVLLIKPS 129 (131)
T ss_dssp CCCEEEEEEEECCCEEEECCTTTCEEEEEHHHHHHH-----------EEEEEEEEEE-
T ss_pred cCcceEEEEeEcCcEEEEEeCCCCeEEEeHHHHHhh-----------CCCEEEEEEeC
Confidence 458998888875555555552 3345677887663 46888887764
No 60
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=39.43 E-value=6.2 Score=37.28 Aligned_cols=94 Identities=21% Similarity=0.253 Sum_probs=49.3
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhhCC-CCC--CCCCCCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCCC
Q 024898 1 MHQDAHEFLNFLLNELVDILEKEEAAKS-DPE--SSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRC 77 (261)
Q Consensus 1 ~QqDa~Efl~~ll~~L~~e~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~C 77 (261)
.||||||+|+.|||-|..|--+..+... ... .........+.... ...-........++...|.|.....+.|..|
T Consensus 305 ~QhDsHELLR~LLD~l~~EE~~~~kk~Il~~fG~~t~~l~scle~~q~-sKvYe~f~~~~~~vp~~~~~~~~s~~~~~~~ 383 (877)
T KOG1873|consen 305 DQHDSHELLRCLLDSLRSEESRRRKKNILSNFGGETSSLVSCLECGQK-SKVYEPFKDLSLPVPLSFNGPLTSQIECQAC 383 (877)
T ss_pred ccccHHHHHHHHHHhhhHHHHHHHHHhHHHhhCccccchhhhhhccch-hhcccccccCCcccccccCCCcccchhhhcc
Confidence 4999999999999999876544333221 000 01111111111100 0001111223344556677777777777777
Q ss_pred CCccccccceEEEEeecCC
Q 024898 78 ETVTARDETFFDLSLDIEQ 96 (261)
Q Consensus 78 ~~~~~~~~~f~~l~l~i~~ 96 (261)
. ++...+.|...+++|-.
T Consensus 384 ~-vss~~~s~~~~t~pv~~ 401 (877)
T KOG1873|consen 384 D-VSSVHESFLSETLPVLP 401 (877)
T ss_pred c-eeccchhhccccccccc
Confidence 6 55566666676666643
No 61
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=36.97 E-value=1.3e+02 Score=23.29 Aligned_cols=9 Identities=33% Similarity=1.058 Sum_probs=7.6
Q ss_pred ccccccCCc
Q 024898 119 FFCDKCCSL 127 (261)
Q Consensus 119 ~~C~~C~~~ 127 (261)
+.|+.||..
T Consensus 137 F~Cp~Cg~~ 145 (178)
T PRK06266 137 FRCPQCGEM 145 (178)
T ss_pred CcCCCCCCC
Confidence 899999875
No 62
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=36.04 E-value=19 Score=17.91 Aligned_cols=9 Identities=33% Similarity=0.774 Sum_probs=7.1
Q ss_pred cccccccCC
Q 024898 118 KFFCDKCCS 126 (261)
Q Consensus 118 ~~~C~~C~~ 126 (261)
.|.|++||.
T Consensus 16 ~f~CPnCG~ 24 (24)
T PF07754_consen 16 PFPCPNCGF 24 (24)
T ss_pred eEeCCCCCC
Confidence 488999974
No 63
>cd02420 Peptidase_C39D A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=35.20 E-value=1.6e+02 Score=20.64 Aligned_cols=33 Identities=6% Similarity=0.098 Sum_probs=21.7
Q ss_pred CeeEEEEEec-CCcEEEeeCce-eeEeChHHHHhh
Q 024898 200 HGHYVSLVKS-HNHWLFFDDEN-VEMIDESAVQTF 232 (261)
Q Consensus 200 ~GHY~~~~~~-~~~W~~~nD~~-V~~~~~~~v~~~ 232 (261)
.|||+-..+. +++|+.+|-.. ...++.++..+.
T Consensus 83 ~g~~~Vl~~~~~~~~~i~dp~~~~~~~s~~el~~~ 117 (125)
T cd02420 83 FNHFLVVEGFDKRKVFLNDPATGRRTVSLEEFDQS 117 (125)
T ss_pred CCEEEEEEEEeCCEEEEECCCcCceeecHHHHHhh
Confidence 4899998887 55666666432 235677777653
No 64
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=34.79 E-value=27 Score=25.77 Aligned_cols=50 Identities=22% Similarity=0.307 Sum_probs=25.5
Q ss_pred EEEEEEEeCCCCCcccccc-ceEEEEeecCCCCCHHHHHHhccCccccCCCCcccccccCCc
Q 024898 67 ILTNETRCLRCETVTARDE-TFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSL 127 (261)
Q Consensus 67 ~~~~~~~C~~C~~~~~~~~-~f~~l~l~i~~~~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~ 127 (261)
...-...|..||......+ ++ .| + ..+...+ .+.++..... +.|+.||..
T Consensus 66 ~~p~~~~C~~CG~~~~~~~~~~-~~----~--~~~~~~~--~~~~~~~~~~--~~CP~Cgs~ 116 (135)
T PRK03824 66 EEEAVLKCRNCGNEWSLKEVKE-SL----D--EEIREAI--HFIPEVVHAF--LKCPKCGSR 116 (135)
T ss_pred ecceEEECCCCCCEEecccccc-cc----c--ccccccc--cccccccccC--cCCcCCCCC
Confidence 4445789999997543321 11 11 1 1122222 2344443321 679999975
No 65
>PF08882 Acetone_carb_G: Acetone carboxylase gamma subunit; InterPro: IPR014979 Acetone carboxylase is the key enzyme of bacterial acetone metabolism, catalysing the condensation of acetone and CO2 to form acetoacetate [] according to the following reaction: CH3COCH3 + CO2 + ATP = CH3COCH2COO- + AMP + 2P(i) + H+ It has the subunit composition: (alpha(2)beta(2)gamma(2) multimers of 85kDa, 78kDa, and 20kDa subunits). It is expressed to high levels (17 to 25% of soluble protein) in cells grown with acetone as the carbon source but are not present at detectable levels in cells grown with other carbon sources []. Acetone carboxylase may enable Helicobacter pylori to survive off acetone in the stomach of humans and other mammals where it is the etiological agent of peptic ulcer disease []. This entry represents the family of gamma subunit-related acetone carboxylase proteins.
Probab=34.54 E-value=36 Score=24.09 Aligned_cols=54 Identities=9% Similarity=0.246 Sum_probs=29.2
Q ss_pred EEEeCCCCCccccccceEEEEeecCCCCCHHH---HHHhccCc----cccCCCCcccccccCCce
Q 024898 71 ETRCLRCETVTARDETFFDLSLDIEQNSSITS---CLKNFSST----ETLNAEDKFFCDKCCSLQ 128 (261)
Q Consensus 71 ~~~C~~C~~~~~~~~~f~~l~l~i~~~~sl~~---~l~~~~~~----e~~~~~~~~~C~~C~~~~ 128 (261)
.++| .||+.--.....+-+...+--..+-+. .-...+.+ ..+.. |+|+.||...
T Consensus 24 ~vkc-~CGh~f~d~r~NwK~~alv~vRd~~E~~~~iYp~~~aPdp~w~~irE---yyCP~Cgt~l 84 (112)
T PF08882_consen 24 VVKC-DCGHEFCDARENWKLGALVYVRDPEEIHPEIYPFTMAPDPEWQVIRE---YYCPGCGTQL 84 (112)
T ss_pred eeec-cCCCeecChhcChhhCcEEEecChHHhhhhhcccccCCCCCcEEEEE---EECCCCccee
Confidence 6788 899977655555555555433222221 11122332 12222 8999998864
No 66
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only]
Probab=33.85 E-value=95 Score=28.45 Aligned_cols=49 Identities=12% Similarity=0.228 Sum_probs=29.9
Q ss_pred CCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCCeEEEEEeeeeeecccceeEecceEEeeC
Q 024898 98 SSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFP 169 (261)
Q Consensus 98 ~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~vL~i~l~Rf~~~~~~~~~~K~~~~v~~p 169 (261)
.+++++++..+....| ++...|..++|++.||.-+.. ...++.-.+.+|
T Consensus 501 p~~qqL~e~sf~sS~i---------------------k~~e~pSc~iiqmprfgk~~k--m~~~i~pS~~l~ 549 (724)
T KOG3556|consen 501 PGFQQLSELSFPSSSI---------------------KSTETPSCQIIQMPRFGKSQK--MPAAIGPSISLP 549 (724)
T ss_pred chHHHHhhhhcccccc---------------------ccccCcchhheeccccCcccc--cchhcCCceEee
Confidence 4788887765543333 345678999999999975443 223444444443
No 67
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=33.78 E-value=42 Score=33.43 Aligned_cols=34 Identities=26% Similarity=0.484 Sum_probs=26.0
Q ss_pred CceeEEcEEEeeeecCCCCeeEEEEEec-CCcEEEeeCc
Q 024898 182 DIEYSLFAVVVHVGSGPNHGHYVSLVKS-HNHWLFFDDE 219 (261)
Q Consensus 182 ~~~Y~L~gvv~H~G~~~~~GHY~~~~~~-~~~W~~~nD~ 219 (261)
+..--|.|| |+...+|||+..++. ++++|+||--
T Consensus 48 gfmpvltgv----~p~~~sghwimlikg~gn~y~lfdpl 82 (1439)
T PF12252_consen 48 GFMPVLTGV----SPRQDSGHWIMLIKGQGNQYYLFDPL 82 (1439)
T ss_pred CCceeecCc----CCCCcCceeEEEEEcCCCceEEeccc
Confidence 444455555 555788999999998 8899999864
No 68
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=32.54 E-value=1.1e+02 Score=22.31 Aligned_cols=79 Identities=18% Similarity=0.352 Sum_probs=45.2
Q ss_pred eeeeeEEE--EEEEEeCCCCCccccccceEEEEeecCCCCCHHHHHHhccCccccCCCC-----cccccccCCceeEEEE
Q 024898 61 HKNFQGIL--TNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAED-----KFFCDKCCSLQEAQKR 133 (261)
Q Consensus 61 ~~lF~~~~--~~~~~C~~C~~~~~~~~~f~~l~l~i~~~~sl~~~l~~~~~~e~~~~~~-----~~~C~~C~~~~~~~~~ 133 (261)
..||-.+- ...++| .||+........+.|.-++--. .-++.|+.......+.+-+ .+.|+.|+......
T Consensus 58 ~hlfi~qs~~~rv~rc-ecghsf~d~r~nwkl~a~i~vr-dtee~lreiyp~s~ipdp~wme~reficpecg~l~eve-- 133 (165)
T COG4647 58 DHLFICQSAQKRVIRC-ECGHSFGDYRENWKLHANIYVR-DTEEKLREIYPKSDIPDPQWMEIREFICPECGILHEVE-- 133 (165)
T ss_pred CcEEEEecccccEEEE-eccccccChhhCceeeeEEEEc-chHHHHHHhCcccCCCCchHHHHHHhhCccccceeeec--
Confidence 45675544 235778 7999887777788887776433 3344554433222222111 26899998765433
Q ss_pred EEEeecCCeEEEE
Q 024898 134 MKIKKSPHTLVIH 146 (261)
Q Consensus 134 ~~i~~lP~vL~i~ 146 (261)
...|-+=+||
T Consensus 134 ---aaap~ypivh 143 (165)
T COG4647 134 ---AAAPGYPIVH 143 (165)
T ss_pred ---cCCCCCceec
Confidence 2345555554
No 69
>PF11164 DUF2948: Protein of unknown function (DUF2948); InterPro: IPR021335 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=31.39 E-value=2.2e+02 Score=21.15 Aligned_cols=71 Identities=18% Similarity=0.301 Sum_probs=49.0
Q ss_pred ecCCeEEEEEeeeeeecc---cceeEecceEEeeCceeeCCCCC---CCCCceeEEcEEEeeeecCCCCeeEEEEEec
Q 024898 138 KSPHTLVIHLKRFKYIEQ---LGRYKKLSYRVVFPLELKLSNTA---EDADIEYSLFAVVVHVGSGPNHGHYVSLVKS 209 (261)
Q Consensus 138 ~lP~vL~i~l~Rf~~~~~---~~~~~K~~~~v~~p~~l~l~~~~---~~~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~ 209 (261)
.--.-|++-++||.++.. .....+...-+.|...+.+.... ..+....+|.|+-.+-|. ..+||-.-.+-.
T Consensus 32 ~~~rrf~l~~NRF~WE~~~~~~~~~eR~rs~L~f~~V~~Vks~gi~~~~~d~vLsLLai~fe~~e-~p~G~v~L~fAG 108 (138)
T PF11164_consen 32 PKERRFALLLNRFRWEDAERRGRPPERVRSALRFDRVLAVKSRGIDRKDPDAVLSLLAITFEPGE-APAGHVLLTFAG 108 (138)
T ss_pred ccCCEEEEEeeeeEeccCccCCCCCcEEEEEEEEccEeeeeecCCCCCCCCceEEEEEEEEEeCC-CCCcEEEEEECC
Confidence 334578999999999876 33345666667777666555432 234678999999999987 667776655443
No 70
>COG0093 RplN Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]
Probab=29.73 E-value=1e+02 Score=22.08 Aligned_cols=34 Identities=24% Similarity=0.402 Sum_probs=25.4
Q ss_pred EEcEEEeeeecCCCCeeEEEEEecCCcEEEeeCceeeEeChH
Q 024898 186 SLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDES 227 (261)
Q Consensus 186 ~L~gvv~H~G~~~~~GHY~~~~~~~~~W~~~nD~~V~~~~~~ 227 (261)
-+.|||+..-. .+.|.+|.|+.|||.-.--++.+
T Consensus 57 V~~AViVRtkk--------~~rR~DGs~i~FddNA~Viin~~ 90 (122)
T COG0093 57 VVKAVVVRTKK--------EVRRPDGSYIKFDDNAAVIINPD 90 (122)
T ss_pred eEEEEEEEeCC--------ceEcCCCCEEEeCCceEEEECCC
Confidence 45788888765 25677999999999877666543
No 71
>cd02425 Peptidase_C39F A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=28.68 E-value=1.7e+02 Score=20.40 Aligned_cols=31 Identities=19% Similarity=0.139 Sum_probs=19.6
Q ss_pred eeEEEEEecCCcEEEeeCce--eeEeChHHHHh
Q 024898 201 GHYVSLVKSHNHWLFFDDEN--VEMIDESAVQT 231 (261)
Q Consensus 201 GHY~~~~~~~~~W~~~nD~~--V~~~~~~~v~~ 231 (261)
|||+-..+.++..+.+.|.. ...++.++..+
T Consensus 85 ~~~~Vl~~~~~~~~~i~dp~~~~~~~~~~~l~~ 117 (126)
T cd02425 85 NHFVVLEKIKKNKVTIVDPAIGRIKISIDEFLE 117 (126)
T ss_pred CcEEEEEEEECCEEEEEcCCCCCEEECHHHHHh
Confidence 79988888744444445432 23567777765
No 72
>PF13002 LDB19: Arrestin_N terminal like; InterPro: IPR024391 This entry represents a predicted Ig-like beta sandwich domain found towards the N terminus of protein LDB19 []. It is also found in other sequences and is related to the arrestin N-terminal fold [].
Probab=28.43 E-value=1.3e+02 Score=23.65 Aligned_cols=66 Identities=23% Similarity=0.285 Sum_probs=38.0
Q ss_pred ccccccCCceeEEEEEEEeecCCeEEEEEeeeeeecccceeEecceEEeeCceeeCCCCCCCCCceeEEcEEEee
Q 024898 119 FFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAEDADIEYSLFAVVVH 193 (261)
Q Consensus 119 ~~C~~C~~~~~~~~~~~i~~lP~vL~i~l~Rf~~~~~~~~~~K~~~~v~~p~~l~l~~~~~~~~~~Y~L~gvv~H 193 (261)
-.|..|......-++..|.+-|-.|.....-|=+.- .-+=.+|-..+|... ......|+|.|.+..
T Consensus 23 ~~C~~C~~~~~eL~~W~~l~~~t~l~~G~h~fPFS~--------LiPG~LPaS~~lgs~-~l~~I~Yel~A~a~~ 88 (191)
T PF13002_consen 23 SHCADCKTQTTELKRWDFLTHPTTLTKGSHAFPFSY--------LIPGHLPASMDLGST-PLVSIKYELKAEATY 88 (191)
T ss_pred CcChhHhccceeeeecceecCccccCCCcccCCeeE--------ECCCCCccccccCCC-CcEEEEEEEEEEEEE
Confidence 479999988888888888777776643321111100 000112333343331 224689999999988
No 73
>PF10748 DUF2531: Protein of unknown function (DUF2531); InterPro: IPR019684 This entry represents proteins with unknown function and appears to be restricted to Enterobacteriaceae.
Probab=28.02 E-value=1e+02 Score=22.70 Aligned_cols=63 Identities=13% Similarity=0.207 Sum_probs=41.7
Q ss_pred CceeEEcEEEeeeecCCCCeeEEEEEec-CCcEEEeeCc-------eeeEeChHHHHhhhcCCCCCCCCCCceEEEEEEE
Q 024898 182 DIEYSLFAVVVHVGSGPNHGHYVSLVKS-HNHWLFFDDE-------NVEMIDESAVQTFFGSAQEYSSNTDHGYILFYES 253 (261)
Q Consensus 182 ~~~Y~L~gvv~H~G~~~~~GHY~~~~~~-~~~W~~~nD~-------~V~~~~~~~v~~~~~~~~~~~~~~~~~yil~Y~r 253 (261)
-...+|.|||-. .++|++++.+ +++|.+.-.. .|+.++..++.=..+. .+.|--..++|
T Consensus 33 Ls~WrlqGiVg~------~~~~~gwl~~p~g~W~Rv~~g~~L~~gWrV~~i~~~~ltL~~~~-------~C~P~qw~w~~ 99 (132)
T PF10748_consen 33 LSQWRLQGIVGQ------GDRWIGWLQDPQGKWLRVRQGQVLPPGWRVTQITARQLTLQTGD-------GCEPQQWRWQR 99 (132)
T ss_pred cccceEccEECC------CCcEEEEEECCCCCeEEeccCCCCCCCcEEEEEcCCeEEEccCC-------CCCchheEeee
Confidence 467899999643 4589999998 8999976544 5666666665321111 46666666666
Q ss_pred eCCC
Q 024898 254 LGAG 257 (261)
Q Consensus 254 ~~~~ 257 (261)
+...
T Consensus 100 kG~~ 103 (132)
T PF10748_consen 100 KGTK 103 (132)
T ss_pred cCcc
Confidence 6554
No 74
>KOG2906 consensus RNA polymerase III subunit C11 [Transcription]
Probab=27.60 E-value=1.4e+02 Score=20.63 Aligned_cols=62 Identities=15% Similarity=0.213 Sum_probs=29.7
Q ss_pred eEEEEEEEEeCCCCCccccccceEEEEeecCCCCCHHHHHHhccCccccCCCCcccccccCCcee
Q 024898 65 QGILTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQE 129 (261)
Q Consensus 65 ~~~~~~~~~C~~C~~~~~~~~~f~~l~l~i~~~~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~ 129 (261)
.|....+..|..|.++.........=. .+....+++.|..--..+..+. ....|++|+....
T Consensus 15 ~g~~~~rf~C~tCpY~~~I~~ei~~r~--~~~~Kevd~vlgg~~a~~nv~~-t~~~Cp~Cgh~ra 76 (105)
T KOG2906|consen 15 SGESCNRFSCRTCPYVFPISREISSRK--YPKLKEVDDVLGGDEAWENVDQ-TEATCPTCGHERA 76 (105)
T ss_pred cCCeEeeEEcCCCCceeeEeeeeeccc--cCchhhhhhhcCCcccccchhh-ccCcCCCCCCCce
Confidence 344467889999998764331111111 1222345555533111111111 1157999987643
No 75
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=27.30 E-value=30 Score=24.06 Aligned_cols=19 Identities=32% Similarity=0.586 Sum_probs=17.1
Q ss_pred CCCcHHHHHHHHHHHHHHH
Q 024898 1 MHQDAHEFLNFLLNELVDI 19 (261)
Q Consensus 1 ~QqDa~Efl~~ll~~L~~e 19 (261)
+|.||-.||..||+.--++
T Consensus 27 Ir~dsl~~L~~lL~~~p~~ 45 (102)
T PF12333_consen 27 IREDSLKFLDLLLEHAPDE 45 (102)
T ss_pred HHHhHHHHHHHHHHHCChH
Confidence 5889999999999998777
No 76
>PF14690 zf-ISL3: zinc-finger of transposase IS204/IS1001/IS1096/IS1165
Probab=26.39 E-value=1.3e+02 Score=17.02 Aligned_cols=33 Identities=27% Similarity=0.427 Sum_probs=19.5
Q ss_pred ccccccCCceeE---EEEEEEeec-----CCeEEEEEeeee
Q 024898 119 FFCDKCCSLQEA---QKRMKIKKS-----PHTLVIHLKRFK 151 (261)
Q Consensus 119 ~~C~~C~~~~~~---~~~~~i~~l-----P~vL~i~l~Rf~ 151 (261)
..|+.||..... .+...+..+ |-+|.+...||.
T Consensus 3 ~~Cp~Cg~~~~~~~g~~~r~i~~l~~~~~~~~L~i~~~R~~ 43 (47)
T PF14690_consen 3 PRCPHCGSPSVHRHGYKTRRIRHLPIGGRPVYLRIRKRRYR 43 (47)
T ss_pred ccCCCcCCCceECCceEEEEEeecccCCEEEEEEEEeEEEE
Confidence 579999866422 334444444 446777777764
No 77
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=26.33 E-value=26 Score=28.89 Aligned_cols=54 Identities=17% Similarity=0.218 Sum_probs=36.0
Q ss_pred cccceEEEEeecCCCCCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCCeE
Q 024898 83 RDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTL 143 (261)
Q Consensus 83 ~~~~f~~l~l~i~~~~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~vL 143 (261)
...|...++|-+.-.+-+++++...+.-+ +.|..||-......+..+.++|.++
T Consensus 106 ~ESPVFAlPLLLk~d~~~E~lF~~sf~We-------FeC~~Cg~~~~~R~~K~L~TFtnv~ 159 (275)
T PF15499_consen 106 MESPVFALPLLLKLDPWIEKLFLYSFSWE-------FECSQCGHKYQNRCTKTLVTFTNVI 159 (275)
T ss_pred ccCcHHHhHHHHhcchHHHhHhheeeEEE-------EEccccCChhhhhheeeecccCCCC
Confidence 34466677777765555666665554444 8999999876666666777766653
No 78
>PF01841 Transglut_core: Transglutaminase-like superfamily; InterPro: IPR002931 This domain is found in many proteins known to have transglutaminase activity, i.e. which cross-link proteins through an acyl-transfer reaction between the gamma-carboxamide group of peptide-bound glutamine and the epsilon-amino group of peptide-bound lysine, resulting in a epsilon-(gamma-glutamyl)lysine isopeptide bond. Tranglutaminases have been found in a diverse range of species, from bacteria through to mammals. The enzymes require calcium binding and their activity leads to post-translational modification of proteins through acyl-transfer reactions, involving peptidyl glutamine residues as acyl donors and a variety of primary amines as acyl acceptors, with the generation of proteinase resistant isopeptide bonds []. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterised transglutaminase, the human blood clotting factor XIIIa' []. On the basis of the experimentally demonstrated activity of the Methanobacterium phage psiM2 pseudomurein endoisopeptidase [], it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease []. A subunit of plasma Factor XIII revealed that each Factor XIIIA subunit is composed of four domains (termed N-terminal beta-sandwich, core domain (containing the catalytic and the regulatory sites), and C-terminal beta-barrels 1 and 2) and that two monomers assemble into the native dimer through the surfaces in domains 1 and 2, in opposite orientation. This organisation in four domains is highly conserved during evolution among transglutaminase isoforms [].; PDB: 2F4M_A 2F4O_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B ....
Probab=25.68 E-value=81 Score=21.65 Aligned_cols=20 Identities=25% Similarity=0.287 Sum_probs=17.0
Q ss_pred CCCeeEEEEEec-CCcEEEee
Q 024898 198 PNHGHYVSLVKS-HNHWLFFD 217 (261)
Q Consensus 198 ~~~GHY~~~~~~-~~~W~~~n 217 (261)
...+|.++-+.. +++|+.+|
T Consensus 92 ~~~~H~w~ev~~~~~~W~~~D 112 (113)
T PF01841_consen 92 GNDNHAWVEVYLPGGGWIPLD 112 (113)
T ss_dssp SEEEEEEEEEEETTTEEEEEE
T ss_pred CCCCEEEEEEEEcCCcEEEcC
Confidence 355799999998 89999987
No 79
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=22.41 E-value=2.4e+02 Score=20.95 Aligned_cols=10 Identities=30% Similarity=0.786 Sum_probs=8.4
Q ss_pred ccccccCCce
Q 024898 119 FFCDKCCSLQ 128 (261)
Q Consensus 119 ~~C~~C~~~~ 128 (261)
+.|+.||..-
T Consensus 124 f~Cp~Cg~~l 133 (147)
T smart00531 124 FTCPRCGEEL 133 (147)
T ss_pred EECCCCCCEE
Confidence 8999998764
No 80
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit []. ; PDB: 1V8H_B 2OX5_E 2OXG_E 2OXH_C.
Probab=22.19 E-value=1.8e+02 Score=20.13 Aligned_cols=57 Identities=14% Similarity=0.133 Sum_probs=32.9
Q ss_pred ceeEEcEEEeeee---cCCC------CeeEEEEEecCCcEEEeeCceeeEeChHHHHhhhcCCCCCCCCCCceEEEEEEE
Q 024898 183 IEYSLFAVVVHVG---SGPN------HGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYES 253 (261)
Q Consensus 183 ~~Y~L~gvv~H~G---~~~~------~GHY~~~~~~~~~W~~~nD~~V~~~~~~~v~~~~~~~~~~~~~~~~~yil~Y~r 253 (261)
..=++..+|.|-- .-.+ ..||+.-+. +.+||..|-.+++.... +.+||+=|+-+
T Consensus 13 ~~~~vk~li~HPMetGl~~d~tg~~iPa~~I~~v~-----v~~ng~~v~~~~~~~si------------S~NP~l~F~~~ 75 (100)
T PF08770_consen 13 GVVEVKALISHPMETGLRKDQTGKYIPAHFIEEVE-----VTYNGKPVFRADWGPSI------------SENPYLRFSFK 75 (100)
T ss_dssp EEEEEEEEE----B-S-BB-TTS-BB--B-EEEEE-----EEETTEEEEEEEE-TTB-------------SS-EEEEEEE
T ss_pred CcEEEEEEEECCCccccccCCCCCCCChHheEEEE-----EEECCEEEEEEEeCCcc------------cCCCcEEEEEe
Confidence 4446667777733 2111 247777776 66899999988876655 78999999987
Q ss_pred eCC
Q 024898 254 LGA 256 (261)
Q Consensus 254 ~~~ 256 (261)
...
T Consensus 76 ~~~ 78 (100)
T PF08770_consen 76 GKK 78 (100)
T ss_dssp ESS
T ss_pred cCC
Confidence 654
No 81
>PHA02998 RNA polymerase subunit; Provisional
Probab=22.04 E-value=1.1e+02 Score=23.68 Aligned_cols=48 Identities=15% Similarity=0.293 Sum_probs=29.0
Q ss_pred eeeeeEEEE-EEEEeCCCCCccccccceEEEEeecCCCCCHHHHHHhccCccccCCCCcccccccCCc
Q 024898 61 HKNFQGILT-NETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSL 127 (261)
Q Consensus 61 ~~lF~~~~~-~~~~C~~C~~~~~~~~~f~~l~l~i~~~~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~ 127 (261)
+..|...-. ....|+.|+.... .|+.++..-. -++...- |.|.+|+..
T Consensus 132 ~~yfnvlpkkt~v~CPkCg~~~A---~f~qlQTRSA------------DEPmT~F----YkC~~CG~~ 180 (195)
T PHA02998 132 DDYFNVLDEKYNTPCPNCKSKNT---TPMMIQTRAA------------DEPPLVR----HACRDCKKH 180 (195)
T ss_pred hhheeccCcccCCCCCCCCCCce---EEEEEeeccC------------CCCceEE----EEcCCCCCc
Confidence 456776665 7799999997554 3444444321 1222222 789999865
No 82
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=21.60 E-value=69 Score=24.40 Aligned_cols=23 Identities=22% Similarity=0.509 Sum_probs=18.4
Q ss_pred CHHHHHHhccCccccCCCCcccccccCC
Q 024898 99 SITSCLKNFSSTETLNAEDKFFCDKCCS 126 (261)
Q Consensus 99 sl~~~l~~~~~~e~~~~~~~~~C~~C~~ 126 (261)
.|-..++.|...+.. -.|.+||.
T Consensus 137 ~~~~~~~~f~~~~~~-----rtC~~Cg~ 159 (159)
T TIGR03037 137 DLPPVFEHFYSNEDA-----RTCKNCGH 159 (159)
T ss_pred hhHHHHHHHhCChhh-----ccCCccCC
Confidence 588889988888776 48999974
No 83
>cd02419 Peptidase_C39C A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=21.33 E-value=3e+02 Score=19.21 Aligned_cols=33 Identities=15% Similarity=0.258 Sum_probs=21.0
Q ss_pred CCeeEEEEEecCCcEEEeeCc--eeeEeChHHHHh
Q 024898 199 NHGHYVSLVKSHNHWLFFDDE--NVEMIDESAVQT 231 (261)
Q Consensus 199 ~~GHY~~~~~~~~~W~~~nD~--~V~~~~~~~v~~ 231 (261)
..|||+-..+.++..+.+.|. ....++.++..+
T Consensus 82 ~~g~~~Vl~~~~~~~~~i~dp~~~~~~~~~~el~~ 116 (127)
T cd02419 82 DMNHFVVLKKVSRRRIVIHDPALGKRKLSLEEASR 116 (127)
T ss_pred CCCEEEEEEEEcCCEEEEECCccCCEEEcHHHHHh
Confidence 348999888875544555442 234578888765
No 84
>PF09149 DUF1935: Domain of unknown function (DUF1935); InterPro: IPR015232 This entry represents a conserved region found in various bacterial and eukaryotic hypothetical proteins, as well as in the cysteine protease calpain. Its function has not, as yet, been defined. ; PDB: 1R75_A 2FE0_A.
Probab=21.25 E-value=70 Score=22.42 Aligned_cols=24 Identities=21% Similarity=0.562 Sum_probs=14.0
Q ss_pred eeEEEEEe-cCCcEEEeeCceeeEe
Q 024898 201 GHYVSLVK-SHNHWLFFDDENVEMI 224 (261)
Q Consensus 201 GHY~~~~~-~~~~W~~~nD~~V~~~ 224 (261)
|=.+-.+- .+++|..|||.....+
T Consensus 21 GlLfRiv~~~~~~WaFYNDT~~y~m 45 (104)
T PF09149_consen 21 GLLFRIVDEKEGRWAFYNDTKDYEM 45 (104)
T ss_dssp -SEEEEEETTTTEEEEEE--SSEEE
T ss_pred cEEEEEEECCCCEEEEEeCCCcEEE
Confidence 44455554 4889999999865443
No 85
>PF01088 Peptidase_C12: Ubiquitin carboxyl-terminal hydrolase, family 1; InterPro: IPR001578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C12 (ubiquitin C-terminal hydrolase family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. The type example is the human ubiquitin C-terminal hydrolase UCH-L1. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa and 100-200 kDa, IPR001394 from INTERPRO) []: this family are the 20-30 kDa ppeptides which includes the yeast yuh1. Yeast yuh1 protease is known to be active only against small ubiquitin conjugates, being inactive against conjugated beta-galactosidase []. A mammalian homologue, UCH (ubiquitin conjugate hydrolase), is one of the most abundant proteins in the brain []. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process, 0005622 intracellular; PDB: 1CMX_A 4DM9_A 2ETL_A 3IRT_A 3KW5_A 3IFW_A 2LEN_A 3KVF_A 2WDT_C 2WE6_B ....
Probab=21.15 E-value=94 Score=24.91 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=20.8
Q ss_pred CCeeEEEEEecCCcEEEeeCceeeEeC
Q 024898 199 NHGHYVSLVKSHNHWLFFDDENVEMID 225 (261)
Q Consensus 199 ~~GHY~~~~~~~~~W~~~nD~~V~~~~ 225 (261)
..=||+|||..+|+=|..|-.+-.|+.
T Consensus 164 ~~~HFI~fV~~~G~LyELDG~k~~Pi~ 190 (214)
T PF01088_consen 164 VDFHFIAFVPVDGHLYELDGRKSGPID 190 (214)
T ss_dssp GCEEEEEEEEETTEEEEEETTSSS-EE
T ss_pred CCccEEEEEeECCeEEEcCCCCCCCeE
Confidence 345999999999999999877655553
No 86
>cd04480 RPA1_DBD_A_like RPA1_DBD_A_like: A subgroup of uncharacterized plant OB folds with similarity to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of RPA is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change.
Probab=20.69 E-value=1.1e+02 Score=20.21 Aligned_cols=32 Identities=25% Similarity=0.328 Sum_probs=23.7
Q ss_pred CCcEEEeeCceeeEeChHHHHhhhcCCCCCCCCCCceEEEEEEE
Q 024898 210 HNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYES 253 (261)
Q Consensus 210 ~~~W~~~nD~~V~~~~~~~v~~~~~~~~~~~~~~~~~yil~Y~r 253 (261)
.|+||.+....|.+.+..--. ..++|.+.+..
T Consensus 51 eg~vy~is~f~v~~~~~~y~~------------~~~~y~I~f~~ 82 (86)
T cd04480 51 EGKWYTISNFEVAPNTGSYRP------------TDHPYKIKFMS 82 (86)
T ss_pred eCCEEEEeeEEEEcCCCcccc------------cCCcEEEEeec
Confidence 689999999999887743332 46678877654
No 87
>PF04473 DUF553: Transglutaminase-like domain; InterPro: IPR007562 This entry represents a transglutaminase-like domain found in a family of uncharacterised archaeal proteins that had previously been called DUF553 and UPF0252.
Probab=20.68 E-value=1.9e+02 Score=21.92 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=17.1
Q ss_pred eeEEEEEecCCcEEEeeCc
Q 024898 201 GHYVSLVKSHNHWLFFDDE 219 (261)
Q Consensus 201 GHY~~~~~~~~~W~~~nD~ 219 (261)
||-++.++-+|+||..|=.
T Consensus 109 ~Haa~aV~ing~~yvlDq~ 127 (153)
T PF04473_consen 109 GHAAVAVKINGKYYVLDQH 127 (153)
T ss_pred CeEEEEEEECCEEEEEeCC
Confidence 9999999999999998754
No 88
>PF00123 Hormone_2: Peptide hormone; InterPro: IPR000532 A number of polypeptidic hormones, mainly expressed in the intestine or the pancreas, belong to a group of structurally related peptides [, ]. Once such hormone, glucagon is widely distributed and produced in the alpha-cells of pancreatic islets []. It affects glucose metabolism in the liver [] by inhibiting glycogen synthesis, stimulating glycogenolysis and enchancing gluconeogenesis. It also increases mobilisation of glucose, free fatty acids and ketone bodies, which are metabolites produced in excess in diabetes mellitus. Glucagon is produced, like other peptide hormones, as part of a larger precursor (preproglucagon), which is cleaved to produce glucagon, glucagon-like protein I and glucagon-like protein II []. The structure of glucagon itself is fully conserved in all known mammalian species []. Other members of the structurally similar group include glicentin precursor, secretin, gastric inhibitory protein, vasoactive intestinal peptide (VIP), prealbumin, peptide HI-27 and growth hormone releasing factor.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1T5Q_A 2OBU_A 2QKH_B 2L70_A 2L71_A 2B4N_A 1GCN_A 1D0R_A 3IOL_B 2RRI_A ....
Probab=20.41 E-value=60 Score=16.79 Aligned_cols=12 Identities=42% Similarity=0.783 Sum_probs=8.6
Q ss_pred CcHHHHHHHHHH
Q 024898 3 QDAHEFLNFLLN 14 (261)
Q Consensus 3 qDa~Efl~~ll~ 14 (261)
.=|.+|+.+|++
T Consensus 17 ~aak~fl~~L~~ 28 (28)
T PF00123_consen 17 LAAKKFLQWLMN 28 (28)
T ss_dssp HHHHHHHHHHCH
T ss_pred HHHHHHHHHHhC
Confidence 347888888864
No 89
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=20.34 E-value=72 Score=24.76 Aligned_cols=26 Identities=23% Similarity=0.583 Sum_probs=20.6
Q ss_pred CHHHHHHhccCccccCCCCcccccccCCcee
Q 024898 99 SITSCLKNFSSTETLNAEDKFFCDKCCSLQE 129 (261)
Q Consensus 99 sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~ 129 (261)
.|-..++.|...+.. -.|.+||.-..
T Consensus 143 ~~~~~~~~f~~~~e~-----rtC~~CG~v~~ 168 (177)
T PRK13264 143 DLPPVFAAFYASEEL-----RTCDNCGTVHP 168 (177)
T ss_pred hhHHHHHHHhcCHhh-----ccCCcCCcccC
Confidence 588889998888777 48999997643
Done!