Query 024898
Match_columns 261
No_of_seqs 150 out of 1502
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 16:21:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024898.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024898hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y6e_A Ubiquitin carboxyl-term 100.0 1.1E-52 3.8E-57 363.7 15.2 238 1-259 97-363 (367)
2 2gfo_A Ubiquitin carboxyl-term 100.0 5.3E-51 1.8E-55 356.1 19.8 238 1-255 151-396 (396)
3 3nhe_A Ubiquitin carboxyl-term 100.0 1E-51 3.4E-56 355.1 14.3 241 1-258 97-346 (348)
4 3i3t_A Ubiquitin carboxyl-term 100.0 3.8E-51 1.3E-55 352.3 17.8 243 1-258 90-354 (355)
5 1nb8_A Ubiquitin carboxyl-term 100.0 1.7E-50 5.9E-55 348.0 18.6 223 1-256 85-316 (353)
6 2ayn_A Ubiquitin carboxyl-term 100.0 1.2E-50 4.1E-55 355.3 17.3 236 1-258 106-397 (404)
7 1vjv_A Ubiquitin carboxyl-term 100.0 1.1E-48 3.6E-53 344.0 21.1 209 1-255 122-414 (415)
8 3mhs_A Ubiquitin carboxyl-term 100.0 1.8E-48 6.2E-53 348.1 22.0 223 1-256 239-475 (476)
9 2f1z_A Ubiquitin carboxyl-term 100.0 4E-48 1.4E-52 349.0 19.4 223 1-256 254-485 (522)
10 3ihp_A Ubiquitin carboxyl-term 100.0 7E-45 2.4E-49 341.5 17.2 140 1-178 451-622 (854)
11 2vhf_A Ubiquitin carboxyl-term 99.7 3.6E-18 1.2E-22 143.2 3.2 72 136-218 163-308 (374)
12 3mp2_A Non-structural protein 82.6 1.6 5.6E-05 33.6 4.5 35 188-225 161-195 (211)
13 3o65_A Putative ataxin-3-like 70.0 3.6 0.00012 31.2 3.3 59 187-256 110-170 (191)
14 2fe8_A PP1AB, ORF1AB, replicas 66.4 7.3 0.00025 32.0 4.6 37 188-226 260-296 (315)
15 2ww6_A Fibritin, T4 fibritin; 65.3 3.4 0.00012 20.2 1.5 15 205-219 12-26 (27)
16 1qmy_A Protease, leader protea 62.5 5.9 0.0002 28.3 2.9 36 188-227 110-145 (167)
17 3a43_A HYPD, hydrogenase nicke 45.8 8.7 0.0003 27.5 1.6 18 67-84 66-83 (139)
18 1v8h_A Sulfur oxidation protei 42.8 73 0.0025 21.4 5.9 57 182-255 16-81 (107)
19 3b79_A Toxin secretion ATP-bin 40.2 71 0.0024 21.6 5.8 42 201-253 79-126 (129)
20 1flt_X FLT-1, VGR1, FMS-like t 38.7 39 0.0013 22.2 3.9 39 183-222 53-92 (95)
21 3k8u_A Putative ABC transporte 38.2 83 0.0028 22.3 6.1 55 190-255 84-142 (156)
22 1qyp_A RNA polymerase II; tran 36.0 9.3 0.00032 22.5 0.4 9 71-79 15-23 (57)
23 3c5t_B Exendin-4, exenatide; l 35.3 16 0.00056 18.6 1.2 11 5-15 11-21 (31)
24 2oxg_Z SOXZ protein; immunoglo 34.0 86 0.0029 21.1 5.1 57 182-255 17-82 (108)
25 3h0g_I DNA-directed RNA polyme 29.0 28 0.00095 23.8 2.0 15 70-84 25-39 (113)
26 1t5q_A Gastric inhibitory poly 26.7 39 0.0013 17.1 1.7 11 4-14 18-28 (30)
27 1g9o_A NHE-RF; PDZ domain, com 26.6 1.2E+02 0.0041 18.9 5.6 46 189-235 17-73 (91)
28 2b4n_A Gastric inhibitory poly 23.2 46 0.0016 18.3 1.7 11 5-15 19-29 (42)
29 1twf_I B12.6, DNA-directed RNA 21.5 1.1E+02 0.0037 21.1 3.8 14 70-83 25-38 (122)
30 2i5o_A DNA polymerase ETA; zin 21.0 43 0.0015 18.1 1.3 12 117-128 8-19 (39)
31 2qkd_A Zinc finger protein ZPR 20.8 1.2E+02 0.0041 25.8 4.7 88 68-176 217-308 (404)
32 2l63_A GLP-2, glucagon-like pe 20.7 43 0.0015 17.4 1.2 11 4-14 18-28 (33)
33 2g49_C Glucagon preproprotein; 20.4 29 0.001 17.4 0.5 12 3-14 17-28 (29)
34 2pa1_A PDZ and LIM domain prot 20.1 1.6E+02 0.0056 18.0 5.8 60 189-255 15-85 (87)
No 1
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.1e-52 Score=363.74 Aligned_cols=238 Identities=29% Similarity=0.516 Sum_probs=195.3
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCcCCCCCCC----CCCCCccCCCcccceeeeeeEEEEEEEEeCC
Q 024898 1 MHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTN----GLANGVRKEPLVTWVHKNFQGILTNETRCLR 76 (261)
Q Consensus 1 ~QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~ 76 (261)
.||||+|||.+|||.||++++.......... . ...+... ...|........++|.++|+|++.+.++|..
T Consensus 97 ~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~--~----~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l~s~~~C~~ 170 (367)
T 2y6e_A 97 QQQDSQELLAFLLDGLHEDLNRVKKKPYLEL--K----DANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPE 170 (367)
T ss_dssp SCCCHHHHHHHHHHHHHHHTCSCSSCCCCCC--C----CCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEEEEEEECTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhccCCcccc--c----cccCCchhHHHHHHHHHHHHhcCCccccccCcEEeeeEEeCC
Confidence 4999999999999999999865432211000 0 0000000 0001111122457899999999999999999
Q ss_pred CCCccccccceEEEEeecCCC-------------------CCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEe
Q 024898 77 CETVTARDETFFDLSLDIEQN-------------------SSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIK 137 (261)
Q Consensus 77 C~~~~~~~~~f~~l~l~i~~~-------------------~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~ 137 (261)
|+.++.+.++|+.|+|++|.. .+|+++|+.|+.+|.++++++|.|++|+..+.+.++..|.
T Consensus 171 C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~~~~a~K~~~i~ 250 (367)
T 2y6e_A 171 CAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLW 250 (367)
T ss_dssp TCCEEEEEEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC-CCEEETTTTEEECCEEEEEEE
T ss_pred CCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhcccccCCCCCCccCCCCCCCceEEEEEEEe
Confidence 999999999999999999753 4799999999999999999999999999999999999999
Q ss_pred ecCCeEEEEEeeeeeecccceeEecceEEeeCc-eeeCCCCCCC---CCceeEEcEEEeeeecCCCCeeEEEEEec--CC
Q 024898 138 KSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPL-ELKLSNTAED---ADIEYSLFAVVVHVGSGPNHGHYVSLVKS--HN 211 (261)
Q Consensus 138 ~lP~vL~i~l~Rf~~~~~~~~~~K~~~~v~~p~-~l~l~~~~~~---~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~--~~ 211 (261)
++|+||+|||+||.++.. ...|+...|.||. .|||.+++.. ....|+|+|||+|.|. .++|||+||+|. ++
T Consensus 251 ~lP~vL~i~LkRF~~~~~--~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~a~~~~~~~~ 327 (367)
T 2y6e_A 251 SLPKILVVHLKRFSYNRY--WRDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSNHYGA-MGVGHYTAYAKNKLNG 327 (367)
T ss_dssp ECCSEEEEEEECEEECSS--CEEECCCCEECCSSCEECGGGBSCSSSCCCEEEEEEEEEEECS-SSSCEEEEEEECTTTC
T ss_pred cCCcEEEEEEeCeeecCc--cceecCceEEecCCcCChhhhccCCCCCCceEEEEEEeecCCC-CCCCeeeEEEEcCCCC
Confidence 999999999999999754 5689999999997 6999998754 3679999999999998 899999999998 68
Q ss_pred cEEEeeCceeeEeChHHHHhhhcCCCCCCCCCCceEEEEEEEeCCCCC
Q 024898 212 HWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESLGAGSN 259 (261)
Q Consensus 212 ~W~~~nD~~V~~~~~~~v~~~~~~~~~~~~~~~~~yil~Y~r~~~~~~ 259 (261)
+||+|||+.|+++++++|. ..+||||||+|++....
T Consensus 328 ~W~~fnD~~V~~v~~~~v~------------~~~aYiLfY~r~~~~~~ 363 (367)
T 2y6e_A 328 KWYYFDDSNVSLASEDQIV------------TKAAYVLFYQRRDDEFY 363 (367)
T ss_dssp CEEEEETTEEEECCGGGTS------------STTEEEEEEEECCC---
T ss_pred eEEEECCCCceECCHHHcC------------CCCcEEEEEEEcCCCCC
Confidence 9999999999999999997 67999999999887643
No 2
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=5.3e-51 Score=356.13 Aligned_cols=238 Identities=34% Similarity=0.574 Sum_probs=194.0
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCCCCCc
Q 024898 1 MHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETV 80 (261)
Q Consensus 1 ~QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~C~~~ 80 (261)
.||||+|||.+|||.||++++........... ..+...........|........++|.++|+|++.+.++|..|+.+
T Consensus 151 ~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~--~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~l~s~i~C~~C~~~ 228 (396)
T 2gfo_A 151 SQQDSQELLLFLMDGLHEDLNKADNRKRYKEE--NNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKK 228 (396)
T ss_dssp SCCCHHHHHHHHHHHHHHHHCCCCC-----------TTSCHHHHHHHHHHHHHHHCCSHHHHHHCEEEEEEEEETTTCCE
T ss_pred CCCChHHHHHHHHHHHHHHHhhhccccccccc--cccccchhhHHHHHHHHhhhccCCccchhhCcEEEEEEEeCCCCce
Confidence 49999999999999999998654222110000 0000000000000011111234678999999999999999999999
Q ss_pred cccccceEEEEeecCCC--CCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCCeEEEEEeeeeeecccce
Q 024898 81 TARDETFFDLSLDIEQN--SSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGR 158 (261)
Q Consensus 81 ~~~~~~f~~l~l~i~~~--~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~vL~i~l~Rf~~~~~~~~ 158 (261)
+.+.++|+.|+|+++.. .+|+++|+.|+.+|.++++++|.|++|+..+.+.++..|.++|+||+|||+||.++.. .
T Consensus 229 s~~~e~f~~LsL~ip~~~~~sL~~~L~~f~~~E~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~--~ 306 (396)
T 2gfo_A 229 SRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGR--W 306 (396)
T ss_dssp EEEEEEESSEEECCSCSSEEEHHHHHHHHTSCEEECSTTCEEETTTTEEECEEEEEEEEECCSEEEEEECCEEECSS--S
T ss_pred ecccccceeeeecccccccCCHHHHHHHhCCcccccCCcccccCCcccccceEEEEEEecCCcEEEEEecceeccCc--c
Confidence 99999999999999874 5899999999999999999999999999999999999999999999999999999765 5
Q ss_pred eEecceEEeeCc-eeeCCCCCCC---CCceeEEcEEEeeeecCCCCeeEEEEEec--CCcEEEeeCceeeEeChHHHHhh
Q 024898 159 YKKLSYRVVFPL-ELKLSNTAED---ADIEYSLFAVVVHVGSGPNHGHYVSLVKS--HNHWLFFDDENVEMIDESAVQTF 232 (261)
Q Consensus 159 ~~K~~~~v~~p~-~l~l~~~~~~---~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~--~~~W~~~nD~~V~~~~~~~v~~~ 232 (261)
..|+...|.||. .|||.++... ....|+|+|||+|.| ++++|||+||+|. +++||+|||+.|+++++++|.
T Consensus 307 ~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G-~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~-- 383 (396)
T 2gfo_A 307 KQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVK-- 383 (396)
T ss_dssp EEECCCEEECCSSCBCCGGGBCSCCSSCCCBEEEEEEEEES-CTTTCEEEEEEEETTTTEEEEEETTEEEECCHHHHS--
T ss_pred ceecCceEecchhhccccccccCCCCCCceEEEEEEEEecC-CCCCCceEEEEcCCCCCCEEEEeCCCeEECCHHHcC--
Confidence 689999999995 6999998754 357899999999999 5999999999998 589999999999999999997
Q ss_pred hcCCCCCCCCCCceEEEEEEEeC
Q 024898 233 FGSAQEYSSNTDHGYILFYESLG 255 (261)
Q Consensus 233 ~~~~~~~~~~~~~~yil~Y~r~~ 255 (261)
..+||||||+|++
T Consensus 384 ----------~~~aYiLfY~r~~ 396 (396)
T 2gfo_A 384 ----------SSAAYILFYTSLG 396 (396)
T ss_dssp ----------CTTEEEEEEECC-
T ss_pred ----------CCCceEEEEEEcC
Confidence 6899999999975
No 3
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=1e-51 Score=355.09 Aligned_cols=241 Identities=29% Similarity=0.506 Sum_probs=197.0
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCCCCCc
Q 024898 1 MHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETV 80 (261)
Q Consensus 1 ~QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~C~~~ 80 (261)
.||||+|||.+|||.||++++............. ............|........++|.++|+|++...++|..|+..
T Consensus 97 ~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~ 174 (348)
T 3nhe_A 97 NQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENL--DHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYC 174 (348)
T ss_dssp CCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCC--TTSCHHHHHHHHHHHHHTTCCCHHHHHHCEEEEEEEEETTTCCE
T ss_pred CccCHHHHHHHHHHHHHHHHhhcccCCCCCcccc--ccCCchHHHHHHHHHHHhhcCCccccccceEEEEEEEcCCCCCE
Confidence 4999999999999999999876432221111000 00000000000111122345678999999999999999999999
Q ss_pred cccccceEEEEeecCCCC----CHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCCeEEEEEeeeeeeccc
Q 024898 81 TARDETFFDLSLDIEQNS----SITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQL 156 (261)
Q Consensus 81 ~~~~~~f~~l~l~i~~~~----sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~vL~i~l~Rf~~~~~~ 156 (261)
+.+.++|+.|+|+++... +|+++|+.++.+|.+++++++.|++|+..+.+.++..|.++|++|+|||+||.++..
T Consensus 175 s~~~e~f~~LsL~i~~~~~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL~i~lkRf~~~~~- 253 (348)
T 3nhe_A 175 STVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRI- 253 (348)
T ss_dssp EEEEEEESSEEECCCSSCSSCEEHHHHHHHHHSCEEECGGGCCEETTTTEECCEEEEEEEEECCSEEEEEECCBCCCSS-
T ss_pred eeeeccceEEeeeCCCcccCCCCHHHHHHHhcCceEecCCCceECCCCCCcccEEEEEEeecCCceEEEEEEcccccCC-
Confidence 999999999999998743 899999999999999999999999999999999999999999999999999987653
Q ss_pred ceeEecceEEeeCc-eeeCCCCCCC--CCceeEEcEEEeeeecCCCCeeEEEEEec--CCcEEEeeCceeeEeChHHHHh
Q 024898 157 GRYKKLSYRVVFPL-ELKLSNTAED--ADIEYSLFAVVVHVGSGPNHGHYVSLVKS--HNHWLFFDDENVEMIDESAVQT 231 (261)
Q Consensus 157 ~~~~K~~~~v~~p~-~l~l~~~~~~--~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~--~~~W~~~nD~~V~~~~~~~v~~ 231 (261)
...|+...|.||. .|||.++... ....|+|+|||+|.|. ..+|||+||+|. +++||+|||+.|+++++++|.
T Consensus 254 -~~~K~~~~v~fp~~~ldl~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~v~- 330 (348)
T 3nhe_A 254 -RTSKLTTFVNFPLRDLDLREFASENTNHAVYNLYAVSNHSGT-TMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVR- 330 (348)
T ss_dssp -CCCBCCCCEECCSSCEECGGGBCTTCCCCEEEEEEEEEEEEC-SSCEEEEEEEECTTTCCEEEEETTEEEEECGGGTC-
T ss_pred -ceeecCcceeccCCcCCHhhhcCCCCCCCcEEEEEEEEccCC-CCCcccEEEEccCCCCcEEEEeCCCceECCHHHcC-
Confidence 6689999999994 6999998754 4678999999999996 899999999998 789999999999999999997
Q ss_pred hhcCCCCCCCCCCceEEEEEEEeCCCC
Q 024898 232 FFGSAQEYSSNTDHGYILFYESLGAGS 258 (261)
Q Consensus 232 ~~~~~~~~~~~~~~~yil~Y~r~~~~~ 258 (261)
..+||||||+|++.++
T Consensus 331 -----------~~~aY~LfY~r~~~~~ 346 (348)
T 3nhe_A 331 -----------TSDAYLLFYELASPPS 346 (348)
T ss_dssp -----------CTTEEEEEEEECC---
T ss_pred -----------CCCceEEEEEecCCCC
Confidence 6899999999998765
No 4
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=100.00 E-value=3.8e-51 Score=352.35 Aligned_cols=243 Identities=30% Similarity=0.503 Sum_probs=192.4
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCC--CcCCCCCCC-----------CCCCCccCCCcccceeeeeeEE
Q 024898 1 MHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPS--EKTANGPTN-----------GLANGVRKEPLVTWVHKNFQGI 67 (261)
Q Consensus 1 ~QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~--~~~~~~~~~-----------~~~~~~~~~~~~s~i~~lF~~~ 67 (261)
.||||+|||.+|||.||++++............... .....+... ...|........++|.++|+|+
T Consensus 90 ~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~ 169 (355)
T 3i3t_A 90 SQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQ 169 (355)
T ss_dssp CCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHHHHCCSHHHHHHCEE
T ss_pred CccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCCHHHHHHHHHHHhhhccCCcccccccEE
Confidence 499999999999999999997654332211100000 000000000 0001111122457899999999
Q ss_pred EEEEEEeCCCCCccccccceEEEEeecCCC------CCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCC
Q 024898 68 LTNETRCLRCETVTARDETFFDLSLDIEQN------SSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPH 141 (261)
Q Consensus 68 ~~~~~~C~~C~~~~~~~~~f~~l~l~i~~~------~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~ 141 (261)
+...++|..|+..+.+.++|+.|+|+++.. .+|+++|+.|+.+|.++++++|.|++|++.+.+.++..|.++|+
T Consensus 170 ~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~~~~~sl~~~L~~~~~~e~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~ 249 (355)
T 3i3t_A 170 LKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPR 249 (355)
T ss_dssp EEEEEEETTTCCEEEEEEEESSEEECCCC-------CBHHHHHHHHHCCEEECGGGCCCCSSSCCCCCEEEEEEEEECCS
T ss_pred EEeeEEeCCCCCCceeeccceeecccCCccccccCccCHHHHHHHhCCccccCCCCCeeCCCCCCccceEEEEEcccCCh
Confidence 999999999999999999999999999864 49999999999999999999999999999999999999999999
Q ss_pred eEEEEEeeeeeecccceeEecceEEeeCc-eeeCCCCCCC--CCceeEEcEEEeeeecCCCCeeEEEEEecCCcEEEeeC
Q 024898 142 TLVIHLKRFKYIEQLGRYKKLSYRVVFPL-ELKLSNTAED--ADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDD 218 (261)
Q Consensus 142 vL~i~l~Rf~~~~~~~~~~K~~~~v~~p~-~l~l~~~~~~--~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~~~~W~~~nD 218 (261)
+|+|||+||.++.. ...|+...|.||. .|||.++... +...|+|+|||+|.|. .++|||+||+|.+++||+|||
T Consensus 250 vL~i~lkRF~~~~~--~~~K~~~~v~fp~~~l~l~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~~~~~~~~~W~~~nD 326 (355)
T 3i3t_A 250 ILVLHLNRFSASRG--SIKKSSVGVDFPLQRLSLGDFASDKAGSPVYQLYALCNHSGS-VHYGHYTALCRCQTGWHVYND 326 (355)
T ss_dssp EEEEEECCEECCSS--CCEECCCCCBCCSSCEECGGGBC----CCEEEEEEEEEEEEE-TTEEEEEEEEEETTEEEEEET
T ss_pred heEEEhhheecCCC--CceECCcceeCCccccCchhhccCCCCCcceEEEEEEEecCC-CCCCeEEEEEEcCCeEEEEcC
Confidence 99999999998754 6689999999995 5999988754 3678999999999996 899999999999999999999
Q ss_pred ceeeEeChHHHHhhhcCCCCCCCCCCceEEEEEEEeCCCC
Q 024898 219 ENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESLGAGS 258 (261)
Q Consensus 219 ~~V~~~~~~~v~~~~~~~~~~~~~~~~~yil~Y~r~~~~~ 258 (261)
+.|+++++++|. ..+||||||+|++.++
T Consensus 327 ~~V~~v~~~~v~------------~~~aYiLfY~r~~~~~ 354 (355)
T 3i3t_A 327 SRVSPVSENQVA------------SSEGYVLFYQLMQEPP 354 (355)
T ss_dssp TEEEEECHHHHH------------TSCCSEEEEEEC----
T ss_pred CCcEECCHHHcC------------CCCcEEEEEEeccCCC
Confidence 999999999998 6799999999998764
No 5
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=100.00 E-value=1.7e-50 Score=348.03 Aligned_cols=223 Identities=26% Similarity=0.450 Sum_probs=189.4
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCCCCCc
Q 024898 1 MHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETV 80 (261)
Q Consensus 1 ~QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~C~~~ 80 (261)
.||||+|||.+|||.|++++... ...++|.++|+|++.+.++|..|+..
T Consensus 85 ~QqDA~EFl~~LLd~L~~~~~~~-------------------------------~~~s~i~~~F~g~~~~~i~C~~C~~~ 133 (353)
T 1nb8_A 85 MQHDVQELCRVLLDNVENKMKGT-------------------------------CVEGTIPKLFRGKMVSYIQCKEVDYR 133 (353)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTS-------------------------------TTTTHHHHHHCEEEEEEEEESSSCCE
T ss_pred cchhHHHHHHHHHHHHHHHhcCC-------------------------------CccchhhhhceeEEEEEEEeccCCCe
Confidence 49999999999999999977431 12357999999999999999999999
Q ss_pred cccccceEEEEeecCCCCCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCCeEEEEEeeeeeecccceeE
Q 024898 81 TARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYK 160 (261)
Q Consensus 81 ~~~~~~f~~l~l~i~~~~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~vL~i~l~Rf~~~~~~~~~~ 160 (261)
+.+.++|+.|+|+++...++.++|+.|+.+|.++++++|.|+.|+ .+.+.++..|.++|+||+|||+||.++..++...
T Consensus 134 s~~~e~f~~LsL~i~~~~~l~~~L~~~~~~E~l~~~~~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~ 212 (353)
T 1nb8_A 134 SDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNI 212 (353)
T ss_dssp EEEEEEESCEEECCTTCSBHHHHHHHHTCCEEECTTTCEECGGGC-EECEEEEEEESCCCSEEEEEECCCC--------C
T ss_pred eceeeeeEEEEEEECCCcchHHHHHHhhCccccCCCccccCCcCc-cEeeEEEEEhhcCCCceEEEEecEEEecccCceE
Confidence 999999999999999999999999999999999999999999996 5678999999999999999999999988767778
Q ss_pred ecceEEeeCceeeCCCCCCC----CCceeEEcEEEeeeecCCCCeeEEEEEec--CCcEEEeeCceeeEeChHHHHh-hh
Q 024898 161 KLSYRVVFPLELKLSNTAED----ADIEYSLFAVVVHVGSGPNHGHYVSLVKS--HNHWLFFDDENVEMIDESAVQT-FF 233 (261)
Q Consensus 161 K~~~~v~~p~~l~l~~~~~~----~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~--~~~W~~~nD~~V~~~~~~~v~~-~~ 233 (261)
|+...|.||..|||.+++.. ....|+|+|||+|.|. +++|||+||+|. +++||+|||+.|+++++++|.+ .+
T Consensus 213 K~~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~ 291 (353)
T 1nb8_A 213 KINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGD-NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNY 291 (353)
T ss_dssp CCCCCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEEESS-TTCCCEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGS
T ss_pred ecCcEEECCCeeehhhhhcccCCCCCceEEEEEEEEEeCC-CCCcEEEEEEecCCCCCEEEEECcceEECCHHHHHHHhc
Confidence 99999999999999998754 3579999999999998 899999999996 8999999999999999999975 44
Q ss_pred cCCCCC--CCCCCceEEEEEEEeCC
Q 024898 234 GSAQEY--SSNTDHGYILFYESLGA 256 (261)
Q Consensus 234 ~~~~~~--~~~~~~~yil~Y~r~~~ 256 (261)
||.+.. ...+.+||||||+|.+.
T Consensus 292 gg~~~~~~~~~~~~aYiLfY~r~~~ 316 (353)
T 1nb8_A 292 GGHDDDLSVRHCTNAYMLVYIRESK 316 (353)
T ss_dssp CCC-------CCEEEEEEEEEETTT
T ss_pred CCCccccccCcCCeEEEEEEEECch
Confidence 543211 01246899999999875
No 6
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=100.00 E-value=1.2e-50 Score=355.26 Aligned_cols=236 Identities=25% Similarity=0.314 Sum_probs=192.3
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCCCCCc
Q 024898 1 MHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETV 80 (261)
Q Consensus 1 ~QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~C~~~ 80 (261)
.||||+|||.+|||.||+++...... ... + .....+|........++|.++|+|++...++|..|+.+
T Consensus 106 ~QqDA~Efl~~lLd~L~~~~~~~~~~----~~~---e-----~~~~~~~~~~~~~~~s~i~~~F~G~l~s~i~C~~C~~~ 173 (404)
T 2ayn_A 106 LQQDANECWIQMMRVLQQKLEAIEDD----SVK---E-----TDSSSASAATPSKKKSLIDQFFGVEFETTMKCTESEEE 173 (404)
T ss_dssp CCCCHHHHHHHHHHHHHTTSCCCCCC------------------------------CCHHHHHTCEEEEEEEEESSSCCC
T ss_pred cccCHHHHHHHHHHHHHHHhccccCC----ccc---c-----cchhhhhhhhccccCchhhhhccEEEEEEEEecCCCCc
Confidence 59999999999999999988543210 000 0 00112233334456789999999999999999999998
Q ss_pred c--ccccceEEEEeecCCC-CCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCCeEEEEEeeeeeecccc
Q 024898 81 T--ARDETFFDLSLDIEQN-SSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLG 157 (261)
Q Consensus 81 ~--~~~~~f~~l~l~i~~~-~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~vL~i~l~Rf~~~~~~~ 157 (261)
+ .+.++|+.|+|+++.. .+|+++|+.++. +.+. +.|++|+....+.++..|.++|+||+|||+||.++...+
T Consensus 174 s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~-e~l~----~~c~~c~~~~~~~k~~~i~~lP~vL~i~LkRF~~~~~~~ 248 (404)
T 2ayn_A 174 EVTKGKENQLQLSCFINQEVKYLFTGLKLRLQ-EEIT----KQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKES 248 (404)
T ss_dssp CCBCCEEEESSEEEECSSSCCBHHHHHHHTTE-ECCC----CEETTTTEECCEEEEEEEEECCSSEEEEEECBCCCCSSS
T ss_pred cCceeeccCceEEeecCCCcccHHHHHHHhcc-ccee----ecchhhCCccceeeeeeHhhCCCceEEEEEEEEEecccC
Confidence 4 7899999999999975 589999999886 4444 789999999999999999999999999999999998777
Q ss_pred eeEecceEEeeCceeeCCCCCCC----------------------------------------------------CCcee
Q 024898 158 RYKKLSYRVVFPLELKLSNTAED----------------------------------------------------ADIEY 185 (261)
Q Consensus 158 ~~~K~~~~v~~p~~l~l~~~~~~----------------------------------------------------~~~~Y 185 (261)
...|+...|.||..|||.+++.. ....|
T Consensus 249 ~~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y 328 (404)
T 2ayn_A 249 VNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYY 328 (404)
T ss_dssp SCCBCCCCCBCCSEEECGGGBCHHHHHHTTTTTGGGTCTTC----------------------CCCCCSCTTTTCCCSEE
T ss_pred ceeccCceeccCceeEHhHhcChhhhhhcchhhhHHhhhhcccchhhhhhccccccccccccccccccccccCcCCCceE
Confidence 88999999999999999887531 24789
Q ss_pred EEcEEEeeeecCCCCeeEEEEEec-CCcEEEeeCceeeEeChHHHHhhhcCCCCCCCCCCceEEEEEEEeCCCC
Q 024898 186 SLFAVVVHVGSGPNHGHYVSLVKS-HNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESLGAGS 258 (261)
Q Consensus 186 ~L~gvv~H~G~~~~~GHY~~~~~~-~~~W~~~nD~~V~~~~~~~v~~~~~~~~~~~~~~~~~yil~Y~r~~~~~ 258 (261)
+|+|||+|.|.++++|||+||+|. +++||+|||+.|+++++++|++..||+. +.+||||||+|++...
T Consensus 329 ~L~avv~H~G~s~~~GHY~a~v~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~-----~~~aYiLfY~r~~~~~ 397 (404)
T 2ayn_A 329 DLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGD-----WHIAYVLLYGPRRVEI 397 (404)
T ss_dssp EEEEEEEEESSSTTSSEEEEEEEEETTEEEEEBTTBCCCBCHHHHGGGGSSSS-----SCEEEEEEEECC----
T ss_pred EEEEEEEecCCCCCCCCeEEEEECCCCeEEEeecccceecCHHHHHhhhCCCC-----CceEEEEEEEecCCCC
Confidence 999999999977999999999998 9999999999999999999998777654 7899999999987763
No 7
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=100.00 E-value=1.1e-48 Score=344.00 Aligned_cols=209 Identities=20% Similarity=0.371 Sum_probs=181.4
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCCCCCc
Q 024898 1 MHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETV 80 (261)
Q Consensus 1 ~QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~C~~~ 80 (261)
.||||+|||.+||+.|++++.. ++|.++|+ ++...++|..|+..
T Consensus 122 ~QqDa~Efl~~lLd~L~~~~~~-----------------------------------~~i~~~F~-~~~~~~~C~~C~~~ 165 (415)
T 1vjv_A 122 KQQDAEELFTQLFHSMSIVFGD-----------------------------------KFSEDFRI-QFKTTIKDTANDND 165 (415)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTH-----------------------------------HHHTTTCE-EEEEEEEETTEEEE
T ss_pred cccCHHHHHHHHHHHHHHHhcc-----------------------------------chHHHHHH-hheEEEEECCCCCC
Confidence 5999999999999999998853 45888999 99999999999998
Q ss_pred c--ccccceEEEEeecCCC-CCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCCeEEEEEeeeeeecccc
Q 024898 81 T--ARDETFFDLSLDIEQN-SSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLG 157 (261)
Q Consensus 81 ~--~~~~~f~~l~l~i~~~-~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~vL~i~l~Rf~~~~~~~ 157 (261)
+ .+.++|+.|+|+++.. .+|+++|+.++..+ +. +.|++|+....+.++..|.++|+||+|||+||.++..++
T Consensus 166 s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~e~-i~----~~c~~c~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~ 240 (415)
T 1vjv_A 166 ITVKENESDSKLQCHISGTTNFMRNGLLEGLNEK-IE----KRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTN 240 (415)
T ss_dssp EEEECCCEESCEEECCCTTCCBHHHHHHHHHEEC--------------CCCCEEEEEEEEECBSEEEEEECCEEEETTTT
T ss_pred ccccccccceeeeeccccccchHHHHHHHHhhhh-hh----hcccccCCcccEEEEEEcccCCCeeEEEEEEEEEeCCCC
Confidence 6 5899999999999976 48999999988744 44 789999999999999999999999999999999998888
Q ss_pred eeEecceEEeeCceeeCCCCCCC---------------------------------------------------------
Q 024898 158 RYKKLSYRVVFPLELKLSNTAED--------------------------------------------------------- 180 (261)
Q Consensus 158 ~~~K~~~~v~~p~~l~l~~~~~~--------------------------------------------------------- 180 (261)
...|+...|.||..|||.+++..
T Consensus 241 ~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 320 (415)
T 1vjv_A 241 KKSKILRKVVFPFQLDVADMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESE 320 (415)
T ss_dssp EEEECCCCCBCCSEEECGGGBCHHHHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHHH
T ss_pred cchhhcCccCCCcEeEhHHhcChhhhhhhhhhHHHHHHHhhhhhhhhhhhhhccccccccccccccchhhhhchhhHHhh
Confidence 88999999999999999887531
Q ss_pred ---------------------CCceeEEcEEEeeeecCCCCeeEEEEEec---CCcEEEeeCceeeEeChHHHHhhhcCC
Q 024898 181 ---------------------ADIEYSLFAVVVHVGSGPNHGHYVSLVKS---HNHWLFFDDENVEMIDESAVQTFFGSA 236 (261)
Q Consensus 181 ---------------------~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~---~~~W~~~nD~~V~~~~~~~v~~~~~~~ 236 (261)
....|+|+|||+|.|.++++|||+||+|. +++||+|||+.|+++++++|.+..||+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~s~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~ 400 (415)
T 1vjv_A 321 KDQWLEEYKKHFPPNLEKGENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGG 400 (415)
T ss_dssp HHHHHHHHHTTSCTTCCTTBCSSSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEECHHHHHGGGCCT
T ss_pred hhhhhhhcccccccccccccCCCceEEEEEEEEecCCCCCCCCEEEEEeCCCCCCcEEEeECCcCeEcCHHHHhhhcCCC
Confidence 24789999999999977999999999998 899999999999999999999877775
Q ss_pred CCCCCCCCceEEEEEEEeC
Q 024898 237 QEYSSNTDHGYILFYESLG 255 (261)
Q Consensus 237 ~~~~~~~~~~yil~Y~r~~ 255 (261)
. +.+||||||+|++
T Consensus 401 ~-----~~~aYiLfY~r~~ 414 (415)
T 1vjv_A 401 E-----SDSALILMYKGFG 414 (415)
T ss_dssp T-----SCEEEEEEEEETT
T ss_pred C-----cceEEEEEEEecC
Confidence 4 7889999999975
No 8
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=100.00 E-value=1.8e-48 Score=348.06 Aligned_cols=223 Identities=32% Similarity=0.592 Sum_probs=193.6
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCCCCCc
Q 024898 1 MHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETV 80 (261)
Q Consensus 1 ~QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~C~~~ 80 (261)
.||||+|||.+|||.||+++.......... .........++|.++|+|++...++|..|+.+
T Consensus 239 ~QqDA~EFl~~LLd~L~~~~~~~~~~~~~~------------------~~~~~~~~~s~i~~~F~G~l~~~~~C~~C~~~ 300 (476)
T 3mhs_A 239 SQQDAHEFWQFIINQIHQSYVLDLPNAKEV------------------SRANNKQCECIVHTVFEGSLESSIVCPGCQNN 300 (476)
T ss_dssp SCEEHHHHHHHHHHHHHHHHHHHCCC-------------------------CCCSCCSHHHHHSCEEEEEEEECTTTCCC
T ss_pred CCcCHHHHHHHHHHHHHHHHhhcccccccc------------------cccccccCCCcceeecceEEEEEEEECCCCCe
Confidence 499999999999999999987653221100 01112235688999999999999999999998
Q ss_pred c-ccccceEEEEeecCCCCCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCCeEEEEEeeeeeeccccee
Q 024898 81 T-ARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRY 159 (261)
Q Consensus 81 ~-~~~~~f~~l~l~i~~~~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~vL~i~l~Rf~~~~~~~~~ 159 (261)
+ ...++|+.|+|+++...+|+++|+.|+.+|.+++.+ |.|++|+..+.+.++..|.++|+||+|||+||.++.. +..
T Consensus 301 s~~~~e~f~~LsL~i~~~~sl~~~L~~~~~~E~l~~~~-~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~-~~~ 378 (476)
T 3mhs_A 301 SKTTIDPFLDLSLDIKDKKKLYECLDSFHKKEQLKDFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLN-GSN 378 (476)
T ss_dssp CEEEEEEESCEEECCTTCCBHHHHHHHHHCCEECSSCC-CEETTTTEECCCEEEEEEEEBCSEEEEEECCEEECTT-SCE
T ss_pred eCCcccchhhhccchhhhhHHHHHHHHhcChhhccCCC-CcCCccCCcccEEEEEEcccCCcceEEEeeeccccCC-CCe
Confidence 6 558999999999999999999999999999998644 9999999999999999999999999999999998753 567
Q ss_pred EecceEEeeCceeeCCCCCCC------------CCceeEEcEEEeeeecCCCCeeEEEEEec-CCcEEEeeCceeeEeCh
Q 024898 160 KKLSYRVVFPLELKLSNTAED------------ADIEYSLFAVVVHVGSGPNHGHYVSLVKS-HNHWLFFDDENVEMIDE 226 (261)
Q Consensus 160 ~K~~~~v~~p~~l~l~~~~~~------------~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~-~~~W~~~nD~~V~~~~~ 226 (261)
.|+...|.||..|||.++... +...|+|+|||+|.|. .++|||+||+|. +++||+|||+.|+++++
T Consensus 379 ~K~~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~a~vr~~~~~W~~fnD~~V~~v~~ 457 (476)
T 3mhs_A 379 RKLDDFIEFPTYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGT-VNEGHYIAFCKISGGQWFKFNDSMVSSISQ 457 (476)
T ss_dssp EECCCCCBCCSEEECGGGBSCCBCCC--CCCBCCCEEEEEEEEEEEEEC-SSSEEEEEEEECTTSCEEEEETTEEEEECH
T ss_pred EECCEEEcCCCeeechhhcCcccccccccccCCCCCcEEEEEEEEeCCC-CCCCceEEEEECCCCcEEEEeCCceEECCH
Confidence 899999999999999988743 3467999999999997 999999999998 88999999999999999
Q ss_pred HHHHhhhcCCCCCCCCCCceEEEEEEEeCC
Q 024898 227 SAVQTFFGSAQEYSSNTDHGYILFYESLGA 256 (261)
Q Consensus 227 ~~v~~~~~~~~~~~~~~~~~yil~Y~r~~~ 256 (261)
++|+ ..+||||||+|++.
T Consensus 458 ~~v~------------~~~aYiLfY~r~~~ 475 (476)
T 3mhs_A 458 EEVL------------KEQAYLLFYTIRQV 475 (476)
T ss_dssp HHHT------------TSCEEEEEEEEEEE
T ss_pred HHhc------------cCCcEEEEEEEecC
Confidence 9998 67999999999864
No 9
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=100.00 E-value=4e-48 Score=349.05 Aligned_cols=223 Identities=25% Similarity=0.441 Sum_probs=195.7
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCCCCCc
Q 024898 1 MHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETV 80 (261)
Q Consensus 1 ~QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~C~~~ 80 (261)
.||||+|||.+|||.|+++++.. ...++|.++|+|++.+.++|..|+..
T Consensus 254 ~QqDa~Efl~~LLd~L~~~l~~~-------------------------------~~~s~i~~lF~G~~~s~i~C~~C~~~ 302 (522)
T 2f1z_A 254 MQHDVQELCRVLLDNVENKMKGT-------------------------------CVEGTIPKLFRGKMVSYIQCKEVDYR 302 (522)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTTS-------------------------------TTTTHHHHHHCEEEEEEECCSSSCCC
T ss_pred ccccHHHHHHHHHHHHHhhccCC-------------------------------ccccchhhheeEEEEEEEEcCCCCce
Confidence 59999999999999999987531 12357999999999999999999999
Q ss_pred cccccceEEEEeecCCCCCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecCCeEEEEEeeeeeecccceeE
Q 024898 81 TARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYK 160 (261)
Q Consensus 81 ~~~~~~f~~l~l~i~~~~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~vL~i~l~Rf~~~~~~~~~~ 160 (261)
+.+.++|+.|+|+++...+|.++|+.|+.+|.++++++|.|+.|+. +.+.++..|.++|+||+|||+||.++...+...
T Consensus 303 s~~~e~f~~LsL~i~~~~~l~~~L~~~~~~E~l~~~n~~~C~~c~~-~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~ 381 (522)
T 2f1z_A 303 SDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHGL-QEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNI 381 (522)
T ss_dssp CCEEEEESCEEECCTTCCBHHHHHHHHTCEEEECTTSCBCCGGGCS-BCEEEEEEESCCCSEEEEEECCEEECSSSSCEE
T ss_pred eeeeeeeEEEEEEeCCcccchHHHHHhhceeecCCcceeecCcCCc-cceEEEEEeecCCceEEEEEEeEEEcccCCcce
Confidence 9999999999999999999999999999999999999999999964 578999999999999999999999998777889
Q ss_pred ecceEEeeCceeeCCCCCCC----CCceeEEcEEEeeeecCCCCeeEEEEEec--CCcEEEeeCceeeEeChHHHHh-hh
Q 024898 161 KLSYRVVFPLELKLSNTAED----ADIEYSLFAVVVHVGSGPNHGHYVSLVKS--HNHWLFFDDENVEMIDESAVQT-FF 233 (261)
Q Consensus 161 K~~~~v~~p~~l~l~~~~~~----~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~--~~~W~~~nD~~V~~~~~~~v~~-~~ 233 (261)
|+...|.||..|||.+++.. ....|+|+|||+|.|. .++|||+||+|. +++||+|||+.|+++++++|++ .+
T Consensus 382 Ki~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~ 460 (522)
T 2f1z_A 382 KINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGD-NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNY 460 (522)
T ss_dssp ECCCCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEEECS-SSCSEEEEEECTTSSSCCEEEETTEEEECCHHHHSTTSS
T ss_pred EcCcEEeCCCeecchhhhccccCCCCcEEEEEEEEEeccc-CCCceEEEEEecCCCCCEEEEECceeEECCHHHHHHhhc
Confidence 99999999999999998754 3578999999999998 799999999996 7899999999999999999975 44
Q ss_pred cCCCCC--CCCCCceEEEEEEEeCC
Q 024898 234 GSAQEY--SSNTDHGYILFYESLGA 256 (261)
Q Consensus 234 ~~~~~~--~~~~~~~yil~Y~r~~~ 256 (261)
||.+.. .....+||||||+|.+.
T Consensus 461 Gg~~~~~~~~~~~~aYiLfY~r~~~ 485 (522)
T 2f1z_A 461 GGHDDDLSVRHCTNAYMLVYIRESK 485 (522)
T ss_dssp CCC--------CEEEEEEEEEETTS
T ss_pred CCCccccccCcCCceEEEEEEECCc
Confidence 443210 01246899999999875
No 10
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=100.00 E-value=7e-45 Score=341.52 Aligned_cols=140 Identities=24% Similarity=0.365 Sum_probs=128.0
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhhCCCCCCCCCCCcCCCCCCCCCCCCccCCCcccceeeeeeEEEEEEEEeCCCCCc
Q 024898 1 MHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETV 80 (261)
Q Consensus 1 ~QqDa~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~~~~~~~~~C~~C~~~ 80 (261)
.||||+|||.+||+.|+++++. .++|.++|+|++...++|..|+.+
T Consensus 451 ~QQDA~EFl~~LLd~L~~el~~----------------------------------~s~i~~lF~G~l~s~i~C~~C~~v 496 (854)
T 3ihp_A 451 RQQDAQEFFLHLINMVERNCRS----------------------------------SENPNEVFRFLVEEKIKCLATEKV 496 (854)
T ss_dssp SCCBHHHHHHHHHHHHHHTCTT----------------------------------SCCGGGGTCEEEEEEEEETTTTEE
T ss_pred cccCHHHHHHHHHHHHHHHhcc----------------------------------cCCchhhcCceEEEEEEecCCCCE
Confidence 4999999999999999997732 135889999999999999999999
Q ss_pred cccccceEEEEeecCCC--------------------------------CCHHHHHHhccCccccCCCCcccccccCCce
Q 024898 81 TARDETFFDLSLDIEQN--------------------------------SSITSCLKNFSSTETLNAEDKFFCDKCCSLQ 128 (261)
Q Consensus 81 ~~~~~~f~~l~l~i~~~--------------------------------~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~ 128 (261)
+.+.++|+.|+|+||.. .+|+++|+.|+.+|.+++ |.|++|+..+
T Consensus 497 s~t~e~F~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~sL~dcL~~f~~~E~Le~---y~C~~C~~k~ 573 (854)
T 3ihp_A 497 KYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMALPELVRAQVPFSSCLEAYGAPEQVDD---FWSTALQAKS 573 (854)
T ss_dssp EEEEEEESEEEECCCGGGCTTHHHHHHHHHHHHHHHHTTCCCCCCCCEECCHHHHHHHHHSCEEEEE---EEETTTTEEE
T ss_pred eEEeeeceEEEeeCCccccccccchhhhcccccccccccccccccccCCCCHHHHHHHhcCceEeee---eeccccCCcc
Confidence 99999999999999852 489999999999999986 9999999999
Q ss_pred eEEEEEEEeecCCeEEEEEeeeeeecccceeEecceEEeeCceeeCCCCC
Q 024898 129 EAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTA 178 (261)
Q Consensus 129 ~~~~~~~i~~lP~vL~i~l~Rf~~~~~~~~~~K~~~~v~~p~~l~l~~~~ 178 (261)
.+.++..|.++|+||+|||+||.++.. +...|+...|.||..|||.+++
T Consensus 574 ~a~K~~~i~~lP~vLiihLkRF~~d~~-~~~~Ki~~~V~FP~~LDl~~y~ 622 (854)
T 3ihp_A 574 VAVKTTRFASFPDYLVIQIKKFTFGLD-WVPKKLDVSIEMPEELDISQLR 622 (854)
T ss_dssp EEEEEEEESSCCSEEEEEECCEEECGG-GCEEECCEECCCCSEEECGGGB
T ss_pred eeeEEEEeeeCCceEEEEeehheecCC-CceEECCeEEecCCcEehHHhc
Confidence 999999999999999999999999765 5678999999999999998763
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.70 E-value=3.6e-18 Score=143.15 Aligned_cols=72 Identities=36% Similarity=0.631 Sum_probs=61.0
Q ss_pred EeecCCeEEEEEeeeeeecccceeEecceEEeeCceeeCCCCCC------------------------------------
Q 024898 136 IKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAE------------------------------------ 179 (261)
Q Consensus 136 i~~lP~vL~i~l~Rf~~~~~~~~~~K~~~~v~~p~~l~l~~~~~------------------------------------ 179 (261)
|.++|++|+||+.|| +...||.++|.||..||+.++++
T Consensus 163 isrLP~yLtVq~vRF------gKkaKIlrkV~fp~eLDvtdl~tdelr~~~vr~kl~e~e~~~~~k~~k~~~~~~~~~~~ 236 (374)
T 2vhf_A 163 FAEAPSCLIIQMPRF------GKDFKLFKKIFPSLELNITDLLEDTPRQCRICGGLAMYECRECYDDPDISAGKIKQFCK 236 (374)
T ss_dssp ESSCCSEEEEECCCC------SSSSSCCCCCBCCSEECCGGGBSSSCCBCTTTSCBCCEECGGGTTCTTTTTTSCCEECH
T ss_pred eecCCcceEEeeecc------CccccccCCCCCcchhccHhhcCcchhhccHhHHHHHHHHHHHHhhhhccccccccccc
Confidence 999999999999999 35579999999999999865431
Q ss_pred -----------------------------------CCCceeEEcEEEeeeecCCCCeeEEEEEec---CCcEEEeeC
Q 024898 180 -----------------------------------DADIEYSLFAVVVHVGSGPNHGHYVSLVKS---HNHWLFFDD 218 (261)
Q Consensus 180 -----------------------------------~~~~~Y~L~gvv~H~G~~~~~GHY~~~~~~---~~~W~~~nD 218 (261)
.++..|+|.|||+ +++|||+||||. +++|+.||-
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~psg~yeL~aVlt-----adsgHYvafVK~~~~d~~W~~FDs 308 (374)
T 2vhf_A 237 TCNTQVHLHPKRLNHKYNPVSLPKDLPDWDWRHGCIPCQNMELFAVLC-----IETSHYVAFVKYGKDDSAWLFFDS 308 (374)
T ss_dssp HHHHHHTTSGGGTTCCCEECCC----------------CCEEEEEEEE-----EETTEEEEEEECSSSTTCEEEEET
T ss_pred hhhhhhhhhhhhhcccccccccCccccccccccCCCCceeEEEEEEEE-----ccCCceEEEEEecCCCCCeEEEec
Confidence 0126799999999 688999999997 799999984
No 12
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=82.59 E-value=1.6 Score=33.60 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=29.3
Q ss_pred cEEEeeeecCCCCeeEEEEEecCCcEEEeeCceeeEeC
Q 024898 188 FAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMID 225 (261)
Q Consensus 188 ~gvv~H~G~~~~~GHY~~~~~~~~~W~~~nD~~V~~~~ 225 (261)
.+.++..|+ .++|||+.+....+ +.+|-..+.+++
T Consensus 161 ~~~~vF~G~-~~~GHY~~~~~~~~--~~vDG~~~~~~~ 195 (211)
T 3mp2_A 161 VMHAVYTGT-TQNGHYMVDDIEHG--YCVDGMGIKPLK 195 (211)
T ss_dssp SEEEEEESC-TTTCEEEEEETTTT--EEEETTEEECCC
T ss_pred eeEEEEEcC-CCCceEEEEecccc--eEEeCCceeEcc
Confidence 566777998 89999999987655 889988888876
No 13
>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A
Probab=69.95 E-value=3.6 Score=31.18 Aligned_cols=59 Identities=14% Similarity=0.301 Sum_probs=40.8
Q ss_pred EcEEEeeeecCCCCeeEEEEEecCCcEEEeeCceeeE--eChHHHHhhhcCCCCCCCCCCceEEEEEEEeCC
Q 024898 187 LFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEM--IDESAVQTFFGSAQEYSSNTDHGYILFYESLGA 256 (261)
Q Consensus 187 L~gvv~H~G~~~~~GHY~~~~~~~~~W~~~nD~~V~~--~~~~~v~~~~~~~~~~~~~~~~~yil~Y~r~~~ 256 (261)
..|+|++... |++|..|-++.||-+|=..-.| ++...+......- ....|-+|-.+-+.
T Consensus 110 ~~~FI~N~~~-----HWfaiRkigg~WyNLdS~l~~P~~i~~~yL~~fL~ql------~~eg~siFvV~g~l 170 (191)
T 3o65_A 110 ERSFICNYKQ-----HWFTIRKFGKHWFNLNSLLAGPELISDTCLANFLARL------QQQAYSVFVVKGDL 170 (191)
T ss_dssp CCEEEEEESS-----CEEEEEEETTEEEECCTTSSSCEEECHHHHHHHHGGG------GSTTEEEEEEESCC
T ss_pred hhhhhhcccc-----ceeeEEecCCEEEEccCCCCCCCCcChHHHHHHHHHH------HHCCCEEEEEcCCC
Confidence 4789999865 9999999999999999876554 4444444333221 35677777766443
No 14
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=66.44 E-value=7.3 Score=32.01 Aligned_cols=37 Identities=16% Similarity=0.294 Sum_probs=29.3
Q ss_pred cEEEeeeecCCCCeeEEEEEecCCcEEEeeCceeeEeCh
Q 024898 188 FAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDE 226 (261)
Q Consensus 188 ~gvv~H~G~~~~~GHY~~~~~~~~~W~~~nD~~V~~~~~ 226 (261)
++..+..|. .++|||+.+.-.... +++|-..+.+++.
T Consensus 260 ~~a~vF~G~-~~~GHYt~~~~~~~~-~~~Dg~~~~~~~~ 296 (315)
T 2fe8_A 260 LCANEYTGN-YQCGHYTHITAKETL-YRIDGAHLTKMSE 296 (315)
T ss_dssp SEEEEEESC-GGGCEEEEEEESSSE-EEEETTEEEEESE
T ss_pred EEEEEEECC-CCccceEEEecCCce-eEEeCCcceeccc
Confidence 455556898 789999999875555 7999999998875
No 15
>2ww6_A Fibritin, T4 fibritin; D-amino acids, chaperone, viral protein; HET: DPN PG4; 0.98A {Enterobacteria phage T4} PDB: 1rfo_A 1u0p_A 2kbl_A 2ww7_A*
Probab=65.26 E-value=3.4 Score=20.18 Aligned_cols=15 Identities=13% Similarity=0.547 Sum_probs=12.3
Q ss_pred EEEecCCcEEEeeCc
Q 024898 205 SLVKSHNHWLFFDDE 219 (261)
Q Consensus 205 ~~~~~~~~W~~~nD~ 219 (261)
+|||.++.|+...+.
T Consensus 12 ~Yvr~dg~WV~l~t~ 26 (27)
T 2ww6_A 12 AYVRKFGEWVLLSTF 26 (27)
T ss_dssp EEEEETTEEEEGGGG
T ss_pred eeEEEcCeEEEcccc
Confidence 689999999987653
No 16
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=62.50 E-value=5.9 Score=28.28 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=28.3
Q ss_pred cEEEeeeecCCCCeeEEEEEecCCcEEEeeCceeeEeChH
Q 024898 188 FAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDES 227 (261)
Q Consensus 188 ~gvv~H~G~~~~~GHY~~~~~~~~~W~~~nD~~V~~~~~~ 227 (261)
.|-|.-.|. +|-+-++-....||.+||+.+.+.+++
T Consensus 110 hAgIflkg~----eHAVFa~~TS~GWyaiDDe~fypwtPd 145 (167)
T 1qmy_A 110 HAGIFLKGQ----EHAVFACVTSNGWYAIDDEDFYPWTPD 145 (167)
T ss_dssp EEEEEEETT----TEEEEEECCTTSSEEEETTEEEECCCC
T ss_pred hhheeecCC----CceEEEEEccCceEEecccccccCCCC
Confidence 344444444 799999999999999999999998754
No 17
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=45.80 E-value=8.7 Score=27.47 Aligned_cols=18 Identities=11% Similarity=0.100 Sum_probs=12.7
Q ss_pred EEEEEEEeCCCCCccccc
Q 024898 67 ILTNETRCLRCETVTARD 84 (261)
Q Consensus 67 ~~~~~~~C~~C~~~~~~~ 84 (261)
...-...|.+||+.....
T Consensus 66 ~~p~~~~C~~CG~~~~~~ 83 (139)
T 3a43_A 66 EEEAVFKCRNCNYEWKLK 83 (139)
T ss_dssp EECCEEEETTTCCEEEGG
T ss_pred ecCCcEECCCCCCEEecc
Confidence 344578999999875443
No 18
>1v8h_A Sulfur oxidation protein SOXZ; lithotrophic sulfur oxidation, unknown function, structural genomics; 1.20A {Thermus thermophilus HB8} SCOP: b.1.18.19
Probab=42.82 E-value=73 Score=21.42 Aligned_cols=57 Identities=19% Similarity=0.306 Sum_probs=41.4
Q ss_pred CceeEEcEEEeeeecC-CC--------CeeEEEEEecCCcEEEeeCceeeEeChHHHHhhhcCCCCCCCCCCceEEEEEE
Q 024898 182 DIEYSLFAVVVHVGSG-PN--------HGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYE 252 (261)
Q Consensus 182 ~~~Y~L~gvv~H~G~~-~~--------~GHY~~~~~~~~~W~~~nD~~V~~~~~~~v~~~~~~~~~~~~~~~~~yil~Y~ 252 (261)
+...++...|.|--.+ .. -.||+..+. ..+||..|-.+++.... +.+||+-|+-
T Consensus 16 g~~~~vk~~I~HPmetGl~~D~~g~~iPa~~I~~v~-----~~~ng~~v~~~~~~~~i------------S~nP~~~F~~ 78 (107)
T 1v8h_A 16 GEEFRLQVVAQHPNEPGTRRDAEGKLIPAKYINLVE-----VYFEGEKVAEARPGPST------------SANPLYAFKF 78 (107)
T ss_dssp TCEEEEEEEECCCCBCSCCBCTTSCBCCCBCEEEEE-----EEETTEEEEEECCCSSC------------CSSCEEEEEE
T ss_pred CCcEEEEEEeECCCCccccccccCCcCchHheEEEE-----EEECCEEEEEEEeCCcc------------ccCCeEEEEE
Confidence 4456677778885331 11 279998888 66899999998877655 6899999987
Q ss_pred EeC
Q 024898 253 SLG 255 (261)
Q Consensus 253 r~~ 255 (261)
+..
T Consensus 79 ~~~ 81 (107)
T 1v8h_A 79 KAE 81 (107)
T ss_dssp ECC
T ss_pred ecC
Confidence 764
No 19
>3b79_A Toxin secretion ATP-binding protein; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.37A {Vibrio parahaemolyticus rimd 2210633}
Probab=40.22 E-value=71 Score=21.60 Aligned_cols=42 Identities=10% Similarity=-0.098 Sum_probs=26.5
Q ss_pred eeEEEEEecCCc--EEEeeC----ceeeEeChHHHHhhhcCCCCCCCCCCceEEEEEEE
Q 024898 201 GHYVSLVKSHNH--WLFFDD----ENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYES 253 (261)
Q Consensus 201 GHY~~~~~~~~~--W~~~nD----~~V~~~~~~~v~~~~~~~~~~~~~~~~~yil~Y~r 253 (261)
|||+-..+-++. .+.+.| .....++.++..+. .+.++|+-++
T Consensus 79 ~h~vVl~~~~~~~~~~~i~dp~~~~g~~~~~~~ef~~~-----------w~G~~l~~~~ 126 (129)
T 3b79_A 79 GDSCVLNSINMETREAEVTTLESGMVPISIPLEDLLEQ-----------YTGRYFLVKK 126 (129)
T ss_dssp GEEEEEEEEETTTTEEEEECTTTTTSCEEEEHHHHHHH-----------EEEEEEEEEE
T ss_pred CCEEEEEEEcCCCceEEEEccCCCCCcEEeeHHHHHhh-----------CCEEEEEEec
Confidence 699988776332 444444 34567788887653 3677776654
No 20
>1flt_X FLT-1, VGR1, FMS-like tyrosine kinase 1; complex (growth factor-transferase), FLT-1 receptor, cystine glycoprotein; 1.70A {Homo sapiens} SCOP: b.1.1.4 PDB: 1qsv_A 1qsz_A 1qty_X 2xac_C 1rv6_X*
Probab=38.73 E-value=39 Score=22.18 Aligned_cols=39 Identities=8% Similarity=0.007 Sum_probs=29.2
Q ss_pred ceeEE-cEEEeeeecCCCCeeEEEEEecCCcEEEeeCceee
Q 024898 183 IEYSL-FAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVE 222 (261)
Q Consensus 183 ~~Y~L-~gvv~H~G~~~~~GHY~~~~~~~~~W~~~nD~~V~ 222 (261)
..|+. .|+++|.-.-...|.|+|-.+-+|+++.=+ ..|.
T Consensus 53 ~~~D~k~Gf~I~~~~~~~~g~y~C~a~~~g~~~~S~-y~v~ 92 (95)
T 1flt_X 53 IIWDSRKGFIISNATYKEIGLLTCEATVNGHLYKTN-YLTH 92 (95)
T ss_dssp EEEETTTEEEESSCCGGGCEEEEEEEEETTEEEEEE-EEEE
T ss_pred eeECCCCCEEEeCCCcccCcEEEEEEEECCEEEEEE-EEEE
Confidence 34443 588888876678899999999999888765 5543
No 21
>3k8u_A Putative ABC transporter, ATP-binding protein COMA; cysteine protease, quorum-sensing, hydrolase; 1.90A {Streptococcus mutans}
Probab=38.24 E-value=83 Score=22.28 Aligned_cols=55 Identities=24% Similarity=0.324 Sum_probs=32.5
Q ss_pred EEeeeecCCCCeeEEEEEec-CCcEEEeeCc---eeeEeChHHHHhhhcCCCCCCCCCCceEEEEEEEeC
Q 024898 190 VVVHVGSGPNHGHYVSLVKS-HNHWLFFDDE---NVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESLG 255 (261)
Q Consensus 190 vv~H~G~~~~~GHY~~~~~~-~~~W~~~nD~---~V~~~~~~~v~~~~~~~~~~~~~~~~~yil~Y~r~~ 255 (261)
+|+|...+...|||+-..+- ++.++..|-. ....++.++..+. .+.++|+.++..
T Consensus 84 ~I~~~~~~g~~~hfvVl~~~~~~~v~I~DP~~g~~~~~ls~~ef~~~-----------w~G~~l~~~p~~ 142 (156)
T 3k8u_A 84 FIVHVIKGKRLQHYYVVYGSQNNQLIIGDPDPSVKVTRMSKERFQSE-----------WTGLAIFLAPQP 142 (156)
T ss_dssp EEEEEEETTEEEEEEEEEEEETTEEEEEECSTTTEEEEEEHHHHHHH-----------EEEEEEEEEEC-
T ss_pred EEEEEEecCCCcEEEEEEEEcCCEEEEEcCCCCcceEEEcHHHHHhh-----------CceEEEEEEcCc
Confidence 45555431224799988776 4445555432 2567788888764 367777766643
No 22
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=36.00 E-value=9.3 Score=22.50 Aligned_cols=9 Identities=22% Similarity=0.870 Sum_probs=7.8
Q ss_pred EEEeCCCCC
Q 024898 71 ETRCLRCET 79 (261)
Q Consensus 71 ~~~C~~C~~ 79 (261)
.+.|+.|+.
T Consensus 15 ~~~Cp~Cg~ 23 (57)
T 1qyp_A 15 KITCPKCGN 23 (57)
T ss_dssp ECCCTTTCC
T ss_pred EeECCCCCC
Confidence 678999997
No 23
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=35.34 E-value=16 Score=18.63 Aligned_cols=11 Identities=27% Similarity=0.519 Sum_probs=8.3
Q ss_pred HHHHHHHHHHH
Q 024898 5 AHEFLNFLLNE 15 (261)
Q Consensus 5 a~Efl~~ll~~ 15 (261)
|++|+.+|++.
T Consensus 11 akdFv~WL~ng 21 (31)
T 3c5t_B 11 VRLFIEWLKNG 21 (31)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhC
Confidence 77888888753
No 24
>2oxg_Z SOXZ protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2ox5_Z 2oxh_Z*
Probab=34.04 E-value=86 Score=21.10 Aligned_cols=57 Identities=11% Similarity=0.068 Sum_probs=40.9
Q ss_pred CceeEEcEEEeeeecC--C-------CCeeEEEEEecCCcEEEeeCceeeEeChHHHHhhhcCCCCCCCCCCceEEEEEE
Q 024898 182 DIEYSLFAVVVHVGSG--P-------NHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYE 252 (261)
Q Consensus 182 ~~~Y~L~gvv~H~G~~--~-------~~GHY~~~~~~~~~W~~~nD~~V~~~~~~~v~~~~~~~~~~~~~~~~~yil~Y~ 252 (261)
+...++...|.|--.+ . --.||+..+. ..+||..|-.+++.... +.+||+-|+-
T Consensus 17 g~~~~vk~~I~HPMetGl~~d~~g~~IPa~~I~~v~-----~~~ng~~v~~~~~~~~i------------S~NP~~~F~~ 79 (108)
T 2oxg_Z 17 GETVTVKALISHKMESGQRKDADGKLIPRSIINRFT-----CELNGVNVVDVAIDPAV------------STNPYFEFDA 79 (108)
T ss_dssp TEEEEEEEEECCCCBCSCCBCTTSCBCCCBCEEEEE-----EEETTEEEEEEEECTTB------------CSSCEEEEEE
T ss_pred CCCEEEEEEeECCCccccccCcCCCccchHheEEEE-----EEECCEEEEEEEeCCcc------------ccCCeEEEEE
Confidence 4455666777775321 1 1279998888 66899999998877655 6899999987
Q ss_pred EeC
Q 024898 253 SLG 255 (261)
Q Consensus 253 r~~ 255 (261)
+..
T Consensus 80 ~~~ 82 (108)
T 2oxg_Z 80 KVD 82 (108)
T ss_dssp EEC
T ss_pred ecC
Confidence 764
No 25
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=29.01 E-value=28 Score=23.76 Aligned_cols=15 Identities=13% Similarity=0.326 Sum_probs=11.1
Q ss_pred EEEEeCCCCCccccc
Q 024898 70 NETRCLRCETVTARD 84 (261)
Q Consensus 70 ~~~~C~~C~~~~~~~ 84 (261)
....|..|+......
T Consensus 25 ~~~~C~~C~y~~~~~ 39 (113)
T 3h0g_I 25 LRLACRNCDYSEIAA 39 (113)
T ss_dssp CCEECSSSCCEECCS
T ss_pred eEEECCCCCCeEEcC
Confidence 368899999876443
No 26
>1t5q_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=26.70 E-value=39 Score=17.11 Aligned_cols=11 Identities=36% Similarity=0.848 Sum_probs=8.7
Q ss_pred cHHHHHHHHHH
Q 024898 4 DAHEFLNFLLN 14 (261)
Q Consensus 4 Da~Efl~~ll~ 14 (261)
=|.+|+.+||+
T Consensus 18 ~ak~fv~wLl~ 28 (30)
T 1t5q_A 18 HQQDFVNWLLA 28 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 37789999886
No 27
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=26.58 E-value=1.2e+02 Score=18.88 Aligned_cols=46 Identities=22% Similarity=0.293 Sum_probs=31.7
Q ss_pred EEEeeeecCCCCeeEEEEEec-----------CCcEEEeeCceeeEeChHHHHhhhcC
Q 024898 189 AVVVHVGSGPNHGHYVSLVKS-----------HNHWLFFDDENVEMIDESAVQTFFGS 235 (261)
Q Consensus 189 gvv~H~G~~~~~GHY~~~~~~-----------~~~W~~~nD~~V~~~~~~~v~~~~~~ 235 (261)
|+....+. ...|.++.-+.. ++....+|+..|...+..++......
T Consensus 17 G~~~~~~~-~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~ 73 (91)
T 1g9o_A 17 GFHLHGEK-GKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRA 73 (91)
T ss_dssp CEEEEECT-TCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred cEEEEecC-CCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 44444444 346777777753 67899999999988777777765543
No 28
>2b4n_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Homo sapiens} PDB: 2l70_A 2l71_A 2obu_A 2qkh_B*
Probab=23.19 E-value=46 Score=18.27 Aligned_cols=11 Identities=36% Similarity=0.887 Sum_probs=8.6
Q ss_pred HHHHHHHHHHH
Q 024898 5 AHEFLNFLLNE 15 (261)
Q Consensus 5 a~Efl~~ll~~ 15 (261)
|.+|+.+||+.
T Consensus 19 akdFv~WL~~~ 29 (42)
T 2b4n_A 19 QQDFVNWLLAQ 29 (42)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 67888888754
No 29
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=21.48 E-value=1.1e+02 Score=21.07 Aligned_cols=14 Identities=21% Similarity=0.335 Sum_probs=10.9
Q ss_pred EEEEeCCCCCcccc
Q 024898 70 NETRCLRCETVTAR 83 (261)
Q Consensus 70 ~~~~C~~C~~~~~~ 83 (261)
....|..|++....
T Consensus 25 ~~~~C~~C~y~~~~ 38 (122)
T 1twf_I 25 LLFECRTCSYVEEA 38 (122)
T ss_dssp EEEECSSSSCEEEC
T ss_pred CEEECCcCCCeeec
Confidence 57899999986643
No 30
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=21.02 E-value=43 Score=18.06 Aligned_cols=12 Identities=50% Similarity=0.947 Sum_probs=9.2
Q ss_pred CcccccccCCce
Q 024898 117 DKFFCDKCCSLQ 128 (261)
Q Consensus 117 ~~~~C~~C~~~~ 128 (261)
..+.|+.|+...
T Consensus 8 ~~~~C~~C~~~i 19 (39)
T 2i5o_A 8 DQVPCEKCGSLV 19 (39)
T ss_dssp CEEECTTTCCEE
T ss_pred CCcccccccCcC
Confidence 347899998763
No 31
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=20.75 E-value=1.2e+02 Score=25.80 Aligned_cols=88 Identities=16% Similarity=0.158 Sum_probs=48.8
Q ss_pred EEEEEEeCCCCCccccccceEEEEeecCCCCCHHHHHHhccCccccCCCCcccccccCCceeEEEEEEEeecC---CeEE
Q 024898 68 LTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSP---HTLV 144 (261)
Q Consensus 68 ~~~~~~C~~C~~~~~~~~~f~~l~l~i~~~~sl~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP---~vL~ 144 (261)
+.....|+.|+..-. ...+...+| ||+.-++.. +.|+.||-+..-.+. ....| .-++
T Consensus 217 ~~~~s~Cp~C~~~~~----t~~~~~~IP-----------~F~eViims---~~C~~CGyr~neVk~--~g~i~~~G~rit 276 (404)
T 2qkd_A 217 LQFNTNCPECNAPAQ----TNMKLVQIP-----------HFKEVIIMA---TNCENCGHRTNEVKS--GGAVEPLGTRIT 276 (404)
T ss_dssp EEEEECCTTTCCTTC----EEEEEECCT-----------TSCCEEEEE---EECSSSCCEEEEEEE--CSSSCCCEEEEE
T ss_pred eeecccCccCCCccE----EEEEEEeCC-----------CCCcEEEEE---EECCCCCCcccceee--ccccCCCcEEEE
Confidence 445678999996432 334556776 355555543 899999987543322 22333 3455
Q ss_pred EEEeeeeeecccceeEecceEEeeCce-eeCCC
Q 024898 145 IHLKRFKYIEQLGRYKKLSYRVVFPLE-LKLSN 176 (261)
Q Consensus 145 i~l~Rf~~~~~~~~~~K~~~~v~~p~~-l~l~~ 176 (261)
+.+.- ..|-...-.+--...|.+|+- |.+.+
T Consensus 277 L~V~~-~~DL~R~VvKS~ta~i~IPEL~lei~p 308 (404)
T 2qkd_A 277 LHITD-PSDMTRDLLKSETCSVEIPELEFELGM 308 (404)
T ss_dssp EEECS-GGGGGCEEEECTTCEEEEGGGTEEECT
T ss_pred EEECC-hHHccceeEecCceEEEeeeeeEEecC
Confidence 55521 111222234555677888874 55553
No 32
>2l63_A GLP-2, glucagon-like peptide 2; hormone, GPCR, docking, small bowel syndrome; NMR {Homo sapiens} PDB: 2l64_A
Probab=20.73 E-value=43 Score=17.37 Aligned_cols=11 Identities=36% Similarity=0.912 Sum_probs=8.3
Q ss_pred cHHHHHHHHHH
Q 024898 4 DAHEFLNFLLN 14 (261)
Q Consensus 4 Da~Efl~~ll~ 14 (261)
=|.+|+.+|++
T Consensus 18 aak~fl~wL~~ 28 (33)
T 2l63_A 18 AARDFINWLIQ 28 (33)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 47788888874
No 33
>2g49_C Glucagon preproprotein; protein-peptide complex, hydrolase; 2.50A {Homo sapiens} PDB: 1kx6_A 1gcn_A 1bh0_A 1nau_A
Probab=20.45 E-value=29 Score=17.41 Aligned_cols=12 Identities=33% Similarity=0.866 Sum_probs=8.7
Q ss_pred CcHHHHHHHHHH
Q 024898 3 QDAHEFLNFLLN 14 (261)
Q Consensus 3 qDa~Efl~~ll~ 14 (261)
+=|.+|+.+|++
T Consensus 17 ~aak~fv~wL~~ 28 (29)
T 2g49_C 17 RRAQDFVQWLMN 28 (29)
T ss_pred HHHHHHHHHHhc
Confidence 347788888874
No 34
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=20.10 E-value=1.6e+02 Score=18.05 Aligned_cols=60 Identities=12% Similarity=0.066 Sum_probs=38.2
Q ss_pred EEEeeeecCCCCeeEEEEEec-----------CCcEEEeeCceeeEeChHHHHhhhcCCCCCCCCCCceEEEEEEEeC
Q 024898 189 AVVVHVGSGPNHGHYVSLVKS-----------HNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESLG 255 (261)
Q Consensus 189 gvv~H~G~~~~~GHY~~~~~~-----------~~~W~~~nD~~V~~~~~~~v~~~~~~~~~~~~~~~~~yil~Y~r~~ 255 (261)
|+....|.....|-++..+.. ++....+|+..|...+.+++.+.... ......|.+.|.+
T Consensus 15 G~~l~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~-------~~~~v~l~v~R~~ 85 (87)
T 2pa1_A 15 GFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQ-------SPSPLRLQLDRIT 85 (87)
T ss_dssp SEEEEEEGGGTEEEEEEEECSSSHHHHTTCCTTCEEEEETTEESTTCCHHHHHHHHHT-------CCSSEEEEEEECC
T ss_pred CEEEecccCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-------CCCeEEEEEEecC
Confidence 444444543345677777642 67899999998887777787765544 2245566666643
Done!