BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024900
(261 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1J1I|A Chain A, Crystal Structure Of A His-Tagged Serine Hydrolase
Involved In The Carbazole Degradation (Carc Enzyme)
Length = 296
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 106/237 (44%), Gaps = 36/237 (15%)
Query: 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKD-QAFFICN 60
+LA+ +RV ++D++G+G + KP+ YT + L+DF K + D + + N
Sbjct: 61 ILARHYRVIAMDMLGFGKTAKPDIE-------YTQDRRIRHLHDFIKAMNFDGKVSIVGN 113
Query: 61 SIGGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLF 120
S+GG GL +V+ E+ ++L+ + ++ I + RP+I
Sbjct: 114 SMGGATGLGVSVLHSELVNALVLMGSAGLVVEIHEDL---RPIIN--------------- 155
Query: 121 YKMVATSESVRNILCQCYNDTSQVTEELVEKILQPGLETGAADVF---LEFICYSGGPLP 177
Y T E + +++ ND ++ + ++ + + +++I GG
Sbjct: 156 YDF--TREGMVHLVKALTNDGFKIDDAMINSRYTYATDEATRKAYVATMQWIREQGGLFY 213
Query: 178 E-ELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDF--IVLPNVGHCPQDEAP 231
+ E + +V+ P L+ G D P+E AY D ++D ++P+ GH E P
Sbjct: 214 DPEFIRKVQVPTLVVQGKDDKVVPVET--AYKFLDLIDDSWGYIIPHCGHWAMIEHP 268
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/257 (21%), Positives = 98/257 (38%), Gaps = 42/257 (16%)
Query: 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSI 62
L+K +RV + D++G+G++D+P + Y+ ++W + + ++A + N+
Sbjct: 51 LSKFYRVIAPDMVGFGFTDRPENYN------YSKDSWVDHIIGIMDALEIEKAHIVGNAF 104
Query: 63 GGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYK 122
GG + + A+ E M+L+ + + T +
Sbjct: 105 GGGLAIATALRYSERVDRMVLMGAAGTRFDV--------------------TEGLNAVWG 144
Query: 123 MVATSESVRNILCQCYNDTSQVTEELV----EKILQPGLETGAADVF-------LEFICY 171
+ E++RN+L D S VT+EL E +QPG + + +F ++ +
Sbjct: 145 YTPSIENMRNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEPRQRWIDALAS 204
Query: 172 SGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAP 231
S +E + + LI G +D P+ G V GH Q E
Sbjct: 205 S-----DEDIKTLPNETLIIHGREDQVVPLSSSLRLGELIDRAQLHVFGRCGHWTQIEQT 259
Query: 232 HLVNPLVESFVTRHATP 248
N LV F TP
Sbjct: 260 DRFNRLVVEFFNEANTP 276
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 97/257 (37%), Gaps = 42/257 (16%)
Query: 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSI 62
L+K +RV + D++G+G++D+P + Y+ ++W + + ++A + NS
Sbjct: 51 LSKFYRVIAPDMVGFGFTDRPENYN------YSKDSWVDHIIGIMDALEIEKAHIVGNSF 104
Query: 63 GGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYK 122
GG + + A+ E M+L+ + T +
Sbjct: 105 GGGLAIATALRYSERVDRMVLMGAVGTRFDV--------------------TEGLNAVWG 144
Query: 123 MVATSESVRNILCQCYNDTSQVTEELV----EKILQPGLETGAADVF-------LEFICY 171
+ E++RN+L D S VT+EL E +QPG + + +F ++ +
Sbjct: 145 YTPSIENMRNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEPRQRWIDALAS 204
Query: 172 SGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAP 231
S +E + + LI G +D P+ G V GH Q E
Sbjct: 205 S-----DEDIKTLPNETLIIHGREDQVVPLSSSLRLGELIDRAQLHVFGRCGHWTQIEQT 259
Query: 232 HLVNPLVESFVTRHATP 248
N LV F TP
Sbjct: 260 DRFNRLVVEFFNEANTP 276
>pdb|2XT0|A Chain A, Dehalogenase Dppa From Plesiocystis Pacifica Sir-I
Length = 297
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 8/121 (6%)
Query: 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIG 63
A RV + DL G+G SDKP D YTF L F + ++ +C G
Sbjct: 71 AAGGRVVAPDLFGFGRSDKPT-----DDAVYTFGFHRRSLLAFLDALQLERVTLVCQDWG 125
Query: 64 GLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKM 123
G++GL V P++ +I++N + L + P G R F + GKL +
Sbjct: 126 GILGLTLPVDRPQLVDRLIVMNTA---LAVGLSPGKGFESWRDFVANSPDLDVGKLMQRA 182
Query: 124 V 124
+
Sbjct: 183 I 183
>pdb|1WOM|A Chain A, Crystal Structure Of Rsbq
pdb|1WOM|B Chain B, Crystal Structure Of Rsbq
pdb|1WPR|A Chain A, Crystal Structure Of Rsbq Inhibited By Pmsf
pdb|1WPR|B Chain B, Crystal Structure Of Rsbq Inhibited By Pmsf
Length = 271
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGG 64
+ HRV D +G G+SD R + + T + +A + D C+ + + F+ +S+G
Sbjct: 45 EDHRVILFDYVGSGHSDL---RAYDLNRYQTLDGYAQDVLDVCEALDLKETVFVGHSVGA 101
Query: 65 LVGLQAAVMEPEICRGMILLNIS 87
L+G+ A++ PE+ ++++ S
Sbjct: 102 LIGMLASIRRPELFSHLVMVGPS 124
>pdb|4F60|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (t148l, G171q, A172v, C176f)
Length = 299
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
Query: 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSI 62
+A SHR + DLIG G SDKP+ FFD L+ F + + ++ + +
Sbjct: 55 VAPSHRCIAPDLIGMGKSDKPDLDYFFDDH-------VRYLDAFIEALGLEEVVLVIHDW 107
Query: 63 GGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQN 109
G +G A PE +G+ + + + P + R L ++F+
Sbjct: 108 GSALGFHWAKRNPERVKGIACMEFIRPIPTWDEWPEFARELFQAFRT 154
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 13/135 (9%)
Query: 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSI 62
+A SHR + DLIG G SDKP+ FFD L+ F + V ++ + +
Sbjct: 55 VAPSHRCIAPDLIGMGKSDKPDLDYFFDDH-------VRYLDAFIEAVGLEEVVLVIHDW 107
Query: 63 GGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYK 122
G +G A PE +G+ + + + P + R ++F R G+
Sbjct: 108 GSALGFHWAKRNPERVKGIACMEFIRPIPTWDEWPEFARETFQAF----RTADVGREL-- 161
Query: 123 MVATSESVRNILCQC 137
++ + + +L +C
Sbjct: 162 IIDQNAFIEGVLPKC 176
>pdb|3NWO|A Chain A, Crystal Structure Of Proline Iminopeptidase Mycobacterium
Smegmatis
Length = 330
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/251 (21%), Positives = 94/251 (37%), Gaps = 27/251 (10%)
Query: 9 VYSIDLIGYGYSDKPNPRDFFDKP--FYTFETWASQLNDFCKDVVKDQAFFICNSIGGLV 66
V D +G G N D P F+T + + + + C + ++ + S GG++
Sbjct: 85 VIHYDQVGCG-----NSTHLPDAPADFWTPQLFVDEFHAVCTALGIERYHVLGQSWGGML 139
Query: 67 GLQAAVMEPEICRGMILLN--ISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYK-- 122
G + AV +P + + N S+R+ + + L R+ AAG + +
Sbjct: 140 GAEIAVRQPSGLVSLAICNSPASMRLWSEAAGDLRAQLPAETRAALDRHEAAGTITHPDY 199
Query: 123 MVATSESVRNILCQCYNDTSQVTEELVEKILQPGL-ETGAADVFLEFICYSGGPLPEELL 181
+ A +E R +C+ + + + +P + T + G + L
Sbjct: 200 LQAAAEFYRRHVCRVVPTPQDFADSVAQMEAEPTVYHTMNGPNEFHVVGTLGDWSVIDRL 259
Query: 182 PQVKCPVLIAWGDKD-----PWEPIELGRAYGNFDSVEDF--IVLPNVGHCPQDEAPHLV 234
P V PVL+ G+ D W+P D + D V P HC E P
Sbjct: 260 PDVTAPVLVIAGEHDEATPKTWQPF--------VDHIPDVRSHVFPGTSHCTHLEKPEEF 311
Query: 235 NPLVESFVTRH 245
+V F+ +H
Sbjct: 312 RAVVAQFLHQH 322
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 13/135 (9%)
Query: 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSI 62
+A SHR + DLIG G SDKP+ FFD L+ F + + ++ + +
Sbjct: 55 VAPSHRCIAPDLIGMGKSDKPDLDYFFDDH-------VRYLDAFIEALGLEEVVLVIHDW 107
Query: 63 GGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYK 122
G +G A PE +G+ + + + P + R ++F R G+
Sbjct: 108 GSALGFHWAKRNPERVKGIACMEFIRPIPTWDEWPEFARETFQAF----RTADVGREL-- 161
Query: 123 MVATSESVRNILCQC 137
++ + + +L +C
Sbjct: 162 IIDQNAFIEGVLPKC 176
>pdb|3FBW|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant C176y
Length = 299
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 7/107 (6%)
Query: 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSI 62
+A SHR + DLIG G SDKP+ FFD L+ F + + ++ + +
Sbjct: 55 VAPSHRCIAPDLIGMGKSDKPDLDYFFDDH-------VRYLDAFIEALGLEEVVLVIHDW 107
Query: 63 GGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQN 109
G +G A PE +G+ + + + P + R ++F+
Sbjct: 108 GSALGFHWAKRNPERVKGIACMEFIRPIPTWDEWPEFARETFQAFRT 154
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 13/135 (9%)
Query: 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSI 62
+A SHR + DLIG G SDKP+ FFD L+ F + + ++ + +
Sbjct: 52 VAPSHRCIAPDLIGMGKSDKPDLDYFFDDH-------VRYLDAFIEALGLEEVVLVIHDW 104
Query: 63 GGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYK 122
G +G A PE +G+ + + + P + R ++F R G+
Sbjct: 105 GSALGFHWAKRNPERVKGIACMEFIRPIPTWDEWPEFARETFQAF----RTADVGREL-- 158
Query: 123 MVATSESVRNILCQC 137
++ + + +L +C
Sbjct: 159 IIDQNAFIEGVLPKC 173
>pdb|3W06|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dwarf14 Like
(atd14l)
Length = 272
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/245 (21%), Positives = 104/245 (42%), Gaps = 33/245 (13%)
Query: 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYT-FETWASQLNDFCKDVVKDQAFFICNS 61
L +RV D +G G + NP D+FD Y+ E ++ L +D+ + F+ +S
Sbjct: 42 LVDDYRVVLYDNMGAGTT---NP-DYFDFDRYSNLEGYSFDLIAILEDLKIESCIFVGHS 97
Query: 62 IGGLVGLQAAVMEPEICRGMILLNISLRMLH-IKKQPWYGRP-LIRSFQNLLRNTAAGKL 119
+ ++G+ A++ P++ +++++ S R ++ + Q + + L + F+ + N A L
Sbjct: 98 VSAMIGVLASLNRPDLFSKIVMISASPRYVNDVDYQGGFEQEDLNQLFEAIRSNYKAWCL 157
Query: 120 FYKMVATSESVRNILCQ-----CYNDTSQVTEELVEKILQPGLETGAADVFLEFICYSGG 174
+ +A + +I Q +N + + + I Q +
Sbjct: 158 GFAPLAVGGDMDSIAVQEFSRTLFNMRPDIALSVGQTIFQSDM----------------- 200
Query: 175 PLPEELLPQVKCPVLIAWGDKDPWEPIELGR-AYGNFDSVEDFIVLPNVGHCPQDEAPHL 233
++LP V P I KD P+ + + N V+P+ GH PQ +P
Sbjct: 201 ---RQILPFVTVPCHILQSVKDLAVPVVVSEYLHANLGCESVVEVIPSDGHLPQLSSPDS 257
Query: 234 VNPLV 238
V P++
Sbjct: 258 VIPVI 262
>pdb|4IH1|A Chain A, Crystal Structure Of Karrikin Insensitive 2 (kai2) From
Arabidopsis Thaliana
Length = 270
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/245 (21%), Positives = 104/245 (42%), Gaps = 33/245 (13%)
Query: 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYT-FETWASQLNDFCKDVVKDQAFFICNS 61
L +RV D +G G + NP D+FD Y+ E ++ L +D+ + F+ +S
Sbjct: 40 LVDDYRVVLYDNMGAGTT---NP-DYFDFDRYSNLEGYSFDLIAILEDLKIESCIFVGHS 95
Query: 62 IGGLVGLQAAVMEPEICRGMILLNISLRMLH-IKKQPWYGRP-LIRSFQNLLRNTAAGKL 119
+ ++G+ A++ P++ +++++ S R ++ + Q + + L + F+ + N A L
Sbjct: 96 VSAMIGVLASLNRPDLFSKIVMISASPRYVNDVDYQGGFEQEDLNQLFEAIRSNYKAWCL 155
Query: 120 FYKMVATSESVRNILCQ-----CYNDTSQVTEELVEKILQPGLETGAADVFLEFICYSGG 174
+ +A + +I Q +N + + + I Q +
Sbjct: 156 GFAPLAVGGDMDSIAVQEFSRTLFNMRPDIALSVGQTIFQSDM----------------- 198
Query: 175 PLPEELLPQVKCPVLIAWGDKDPWEPIELGR-AYGNFDSVEDFIVLPNVGHCPQDEAPHL 233
++LP V P I KD P+ + + N V+P+ GH PQ +P
Sbjct: 199 ---RQILPFVTVPCHILQSVKDLAVPVVVSEYLHANLGCESVVEVIPSDGHLPQLSSPDS 255
Query: 234 VNPLV 238
V P++
Sbjct: 256 VIPVI 260
>pdb|4HRX|A Chain A, Crystal Structure Of Kai2
pdb|4HRY|A Chain A, The Structure Of Arabidopsis Thaliana Kai2
pdb|4HTA|A Chain A, The Structure Of The Karrikin Insensitive (kai2) Protein
In Arabidopsis Thaliana
Length = 288
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/245 (21%), Positives = 104/245 (42%), Gaps = 33/245 (13%)
Query: 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYT-FETWASQLNDFCKDVVKDQAFFICNS 61
L +RV D +G G + NP D+FD Y+ E ++ L +D+ + F+ +S
Sbjct: 58 LVDDYRVVLYDNMGAGTT---NP-DYFDFDRYSNLEGYSFDLIAILEDLKIESCIFVGHS 113
Query: 62 IGGLVGLQAAVMEPEICRGMILLNISLRMLH-IKKQPWYGRP-LIRSFQNLLRNTAAGKL 119
+ ++G+ A++ P++ +++++ S R ++ + Q + + L + F+ + N A L
Sbjct: 114 VSAMIGVLASLNRPDLFSKIVMISASPRYVNDVDYQGGFEQEDLNQLFEAIRSNYKAWCL 173
Query: 120 FYKMVATSESVRNILCQ-----CYNDTSQVTEELVEKILQPGLETGAADVFLEFICYSGG 174
+ +A + +I Q +N + + + I Q +
Sbjct: 174 GFAPLAVGGDMDSIAVQEFSRTLFNMRPDIALSVGQTIFQSDM----------------- 216
Query: 175 PLPEELLPQVKCPVLIAWGDKDPWEPIELGR-AYGNFDSVEDFIVLPNVGHCPQDEAPHL 233
++LP V P I KD P+ + + N V+P+ GH PQ +P
Sbjct: 217 ---RQILPFVTVPCHILQSVKDLAVPVVVSEYLHANLGCESVVEVIPSDGHLPQLSSPDS 273
Query: 234 VNPLV 238
V P++
Sbjct: 274 VIPVI 278
>pdb|3RK4|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31
pdb|3RLT|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 299
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 7/107 (6%)
Query: 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSI 62
+A SHR + DLIG G SDKP+ FFD L+ F + + ++ + +
Sbjct: 55 VAPSHRCIAPDLIGMGKSDKPDLDYFFDDH-------VRYLDAFIEALGLEEVVLVIHDW 107
Query: 63 GGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQN 109
G +G A PE +G+ + + P + R ++F+
Sbjct: 108 GSALGFHWAKRNPERVKGIACMEFIRPFPTWDEWPEFARETFQAFRT 154
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 7/107 (6%)
Query: 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSI 62
+A SHR + DLIG G SDKP+ FFD L+ F + + ++ + +
Sbjct: 55 VAPSHRCIAPDLIGMGKSDKPDLDYFFDDH-------VRYLDAFIEALGLEEVVLVIHDW 107
Query: 63 GGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQN 109
G +G A PE +G+ + + P + R ++F+
Sbjct: 108 GSALGFHWAKRNPERVKGIACMEFIRPFPTWDEWPEFARETFQAFRT 154
>pdb|4FWB|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 292
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 7/107 (6%)
Query: 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSI 62
+A SHR + DLIG G SDKP+ FFD L+ F + + ++ + +
Sbjct: 52 VAPSHRCIAPDLIGMGKSDKPDLDYFFDDH-------VRYLDAFIEALGLEEVVLVIHDW 104
Query: 63 GGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQN 109
G +G A PE +G+ + + P + R ++F+
Sbjct: 105 GSALGFHWAKRNPERVKGIACMEFIRPFPTWDEWPEFARETFQAFRT 151
>pdb|3FWH|A Chain A, Structure Of Haloalkane Dehalogenase Mutant Dha15
(I135fC176Y) FROM Rhodococcus Rhodochrous
Length = 299
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 7/107 (6%)
Query: 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSI 62
+A SHR + DLIG G SDKP+ FFD L+ F + + ++ + +
Sbjct: 55 VAPSHRCIAPDLIGMGKSDKPDLDYFFDDH-------VRYLDAFIEALGLEEVVLVIHDW 107
Query: 63 GGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQN 109
G +G A PE +G+ + + P + R ++F+
Sbjct: 108 GSALGFHWAKRNPERVKGIACMEFIRPFPTWDEWPEFARETFQAFRT 154
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 107/262 (40%), Gaps = 34/262 (12%)
Query: 2 VLAKS-HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICN 60
VLA + +RV ++D +G+ S KP Y+F+ A+ + + + +A I +
Sbjct: 68 VLADAGYRVIAVDQVGFCKSSKPAHYQ------YSFQQLAANTHALLERLGVARASVIGH 121
Query: 61 SIGGLVGLQAAVMEPEICRGMILLN-ISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKL 119
S GG + + A++ P ++L+N I L PW R + ++ L+ +A G
Sbjct: 122 SXGGXLATRYALLYPRQVERLVLVNPIGLEDWKALGVPW--RSVDDWYRRDLQTSAEGIR 179
Query: 120 FYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPGLETGAADVFLEFICYSGGPLPEE 179
Y+ + + + + G E+ A + L + P+ E
Sbjct: 180 QYQQATYYAG------EWRPEFDRWVQXQAGXYRGKGRESVAWNSALTYDXIFTQPVVYE 233
Query: 180 LLPQVKCPVLIAWGDKD------PWEPIELGRAYGNFDSV----------EDFIVLPNVG 223
L +++ P L+ G+KD P EL GN+ + + P++G
Sbjct: 234 -LDRLQXPTLLLIGEKDNTAIGKDAAPAELKARLGNYAQLGKDAARRIPQATLVEFPDLG 292
Query: 224 HCPQDEAPHLVN-PLVESFVTR 244
H PQ +AP + L+E T+
Sbjct: 293 HTPQIQAPERFHQALLEGLQTQ 314
>pdb|2OCG|A Chain A, Crystal Structure Of Human Valacyclovir Hydrolase
pdb|2OCI|A Chain A, Crystal Structure Of Valacyclovir Hydrolase Complexed With
A Product Analogue
Length = 254
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 72/194 (37%), Gaps = 38/194 (19%)
Query: 9 VYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGL 68
V + D GYG+S +P RDF P FE A D K + + + S GG+ L
Sbjct: 54 VVAWDPRGYGHS-RPPDRDF---PADFFERDAKDAVDLMKALKFKKVSLLGWSDGGITAL 109
Query: 69 QAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSE 128
AA P M++ W + +++ + SE
Sbjct: 110 IAAAKYPSYIHKMVI--------------WGANAYVTDEDSMIYEG-----IRDVSKWSE 150
Query: 129 SVRNIL--CQCYNDTSQVTEELVEKILQPGLETGAADVFLEFICYSGGPLPEELLPQVKC 186
R L Y+ ++ E+ V+ I Q F G + LLP+V+C
Sbjct: 151 RTRKPLEALYGYDYFARTCEKWVDGIRQ-------------FKHLPDGNICRHLLPRVQC 197
Query: 187 PVLIAWGDKDPWEP 200
P LI G+KDP P
Sbjct: 198 PALIVHGEKDPLVP 211
>pdb|2OCK|A Chain A, Crystal Structure Of Valacyclovir Hydrolase D123n Mutant
Length = 254
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 72/194 (37%), Gaps = 38/194 (19%)
Query: 9 VYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGL 68
V + D GYG+S +P RDF P FE A D K + + + S GG+ L
Sbjct: 54 VVAWDPRGYGHS-RPPDRDF---PADFFERDAKDAVDLMKALKFKKVSLLGWSNGGITAL 109
Query: 69 QAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSE 128
AA P M++ W + +++ + SE
Sbjct: 110 IAAAKYPSYIHKMVI--------------WGANAYVTDEDSMIYEG-----IRDVSKWSE 150
Query: 129 SVRNIL--CQCYNDTSQVTEELVEKILQPGLETGAADVFLEFICYSGGPLPEELLPQVKC 186
R L Y+ ++ E+ V+ I Q F G + LLP+V+C
Sbjct: 151 RTRKPLEALYGYDYFARTCEKWVDGIRQ-------------FKHLPDGNICRHLLPRVQC 197
Query: 187 PVLIAWGDKDPWEP 200
P LI G+KDP P
Sbjct: 198 PALIVHGEKDPLVP 211
>pdb|3SK0|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant Dhaa12
Length = 311
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSI 62
+A SHR + DLIG G SDKP+ FFD L+ F + + ++ + +
Sbjct: 55 VAPSHRCIAPDLIGMGKSDKPDLDYFFDD-------HVRYLDAFIEALGLEEVVLVIHDW 107
Query: 63 GGLVGLQAAVMEPEICRGM 81
G +G A PE +G+
Sbjct: 108 GSALGFHWAKRNPERVKGI 126
>pdb|2V9Z|A Chain A, Structure Of The Rhodococcus Haloalkane Dehalogenase
Mutant With Enhanced Enantioselectivity
Length = 304
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSI 62
+A SHR + DLIG G SDKP+ FFD L+ F + + ++ + +
Sbjct: 55 VAPSHRCIAPDLIGMGKSDKPDLDYFFDD-------HVRYLDAFIEALGLEEVVLVIHDW 107
Query: 63 GGLVGLQAAVMEPEICRGM 81
G +G A PE +G+
Sbjct: 108 GSALGFHWAKRNPERVKGI 126
>pdb|2OCL|A Chain A, Crystal Structure Of Valacyclovir Hydrolase S122a Mutant
Length = 254
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 72/194 (37%), Gaps = 38/194 (19%)
Query: 9 VYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGL 68
V + D GYG+S +P RDF P FE A D K + + + + GG+ L
Sbjct: 54 VVAWDPRGYGHS-RPPDRDF---PADFFERDAKDAVDLMKALKFKKVSLLGWADGGITAL 109
Query: 69 QAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSE 128
AA P M++ W + +++ + SE
Sbjct: 110 IAAAKYPSYIHKMVI--------------WGANAYVTDEDSMIYEG-----IRDVSKWSE 150
Query: 129 SVRNIL--CQCYNDTSQVTEELVEKILQPGLETGAADVFLEFICYSGGPLPEELLPQVKC 186
R L Y+ ++ E+ V+ I Q F G + LLP+V+C
Sbjct: 151 RTRKPLEALYGYDYFARTCEKWVDGIRQ-------------FKHLPDGNICRHLLPRVQC 197
Query: 187 PVLIAWGDKDPWEP 200
P LI G+KDP P
Sbjct: 198 PALIVHGEKDPLVP 211
>pdb|3C5W|P Chain P, Complex Between Pp2a-Specific Methylesterase Pme-1 And
Pp2a Core Enzyme
Length = 310
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/249 (22%), Positives = 102/249 (40%), Gaps = 37/249 (14%)
Query: 8 RVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQ---AFFICNSIGG 64
R+ ++DL +G + NP D + ET A + + + + D I +++GG
Sbjct: 72 RIVALDLRSHGETKVKNPEDL------SAETMAKDVGNVVEAMYGDLPPPIMLIGHAMGG 125
Query: 65 LVGLQAAV--MEPEI---CRGMILLNISLRMLHIKKQPWYGRP-LIRSFQNLLRNTAAGK 118
+ + A + P + C ++ ++ L+ + GRP +S +N + +
Sbjct: 126 AIAVHTASSNLVPSLLGLCMIDVVEGTAMDALNSMQNFLRGRPKTFKSLENAIEWSVKSG 185
Query: 119 LFYKMVATSESVRNILCQCYND--TSQVTEELVEKILQPGLETGAADVFLEFICYSGGPL 176
+ + S+ + QC T ++ EK G G +++FL C P+
Sbjct: 186 QIRNLESARVSMVGQVKQCEGKPYTWRIELAKTEKYWD-GWFRGLSNLFLS--C----PI 238
Query: 177 PEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNP 236
P+ LL + DKD + +G+ G F VLP GH ++AP V
Sbjct: 239 PKLLLL-----AGVDRLDKD----LTIGQMQGKFQ----MQVLPQCGHAVHEDAPDKVAE 285
Query: 237 LVESFVTRH 245
V +F+ RH
Sbjct: 286 AVATFLIRH 294
>pdb|2OG1|A Chain A, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2OG1|B Chain B, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2PU5|A Chain A, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
pdb|2PU5|B Chain B, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
Length = 286
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 79/202 (39%), Gaps = 27/202 (13%)
Query: 53 DQAFFICNSIGGLVGLQAAVMEPEICRGMILLN-ISLRMLHIKKQPWYGRPLIRSFQNLL 111
D+A + NS+GG L A+ P+ +IL+ L P G
Sbjct: 104 DRAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGI---------- 153
Query: 112 RNTAAGKLFYKMVA--TSESVRNILCQCYNDTSQVTEELVEKILQPGLETGAADVFLEFI 169
KL +K+ A + E+++ +L D S +TEEL++ + ++ + I
Sbjct: 154 ------KLLFKLYAEPSYETLKQMLQVFLYDQSLITEELLQGRWE-AIQRQPEHLKNFLI 206
Query: 170 CYSGGPLP----EELLPQVKCPVLIAWGDKDPWEPIELG-RAYGNFDSVEDFIVLPNVGH 224
PL L ++K I WG D + P++ G + N D V GH
Sbjct: 207 SAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNIDDAR-LHVFSKCGH 265
Query: 225 CPQDEAPHLVNPLVESFVTRHA 246
Q E N LV F+ RHA
Sbjct: 266 WAQWEHADEFNRLVIDFL-RHA 286
>pdb|3C5V|A Chain A, Pp2a-Specific Methylesterase Apo Form (Pme)
Length = 316
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 103/259 (39%), Gaps = 47/259 (18%)
Query: 8 RVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKD---QAFFICNSIGG 64
R+ ++DL +G + NP D + ET A + + + + D I +S+GG
Sbjct: 68 RIVALDLRSHGETKVKNPEDL------SAETMAKDVGNVVEAMYGDLPPPIMLIGHSMGG 121
Query: 65 LVGLQAAV--MEPEI---CRGMILLNISLRMLHIKKQPWYGRP-LIRSFQNLLRNTAAGK 118
+ + A + P + C ++ ++ L+ + GRP +S +N + +
Sbjct: 122 AIAVHTASSNLVPSLLGLCMIDVVEGTAMDALNSMQNFLRGRPKTFKSLENAIEWSVKSG 181
Query: 119 LFYKMVATSESVRNILCQCYNDTS------------QVTEELVEKILQPGLETGAADVFL 166
+ + S+ + QC TS ++ EK G G +++FL
Sbjct: 182 QIRNLESARVSMVGQVKQCEGITSPEGSKKDHPYTWRIELAKTEKYWD-GWFRGLSNLFL 240
Query: 167 EFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCP 226
C P+P+ LL + DKD + +G+ G F VLP GH
Sbjct: 241 S--C----PIPKLLLL-----AGVDRLDKD----LTIGQMQGKFQ----MQVLPQCGHAV 281
Query: 227 QDEAPHLVNPLVESFVTRH 245
++AP V V +F+ RH
Sbjct: 282 HEDAPDKVAEAVATFLIRH 300
>pdb|2PUH|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
Its Substrate Hopda
Length = 286
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 79/202 (39%), Gaps = 27/202 (13%)
Query: 53 DQAFFICNSIGGLVGLQAAVMEPEICRGMILLN-ISLRMLHIKKQPWYGRPLIRSFQNLL 111
D+A + N++GG L A+ P+ +IL+ L P G
Sbjct: 104 DRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGI---------- 153
Query: 112 RNTAAGKLFYKMVA--TSESVRNILCQCYNDTSQVTEELVEKILQPGLETGAADVFLEFI 169
KL +K+ A + E+++ +L D S +TEEL++ + ++ + I
Sbjct: 154 ------KLLFKLYAEPSYETLKQMLQVFLYDQSLITEELLQGRWE-AIQRQPEHLKNFLI 206
Query: 170 CYSGGPLP----EELLPQVKCPVLIAWGDKDPWEPIELG-RAYGNFDSVEDFIVLPNVGH 224
PL L ++K I WG D + P++ G + N D V GH
Sbjct: 207 SAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNIDDAR-LHVFSKCGH 265
Query: 225 CPQDEAPHLVNPLVESFVTRHA 246
Q E N LV F+ RHA
Sbjct: 266 WAQWEHADEFNRLVIDFL-RHA 286
>pdb|2RHT|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3-Cl Hopda
pdb|2RHW|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3,10-Di-Fluoro Hopda
pdb|2RI6|A Chain A, Crystal Structure Of S112a Mutant Of A C-C Hydrolase, Bphd
From Burkholderia Xenovorans Lb400
Length = 283
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 79/202 (39%), Gaps = 27/202 (13%)
Query: 53 DQAFFICNSIGGLVGLQAAVMEPEICRGMILLN-ISLRMLHIKKQPWYGRPLIRSFQNLL 111
D+A + N++GG L A+ P+ +IL+ L P G
Sbjct: 101 DRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGI---------- 150
Query: 112 RNTAAGKLFYKMVA--TSESVRNILCQCYNDTSQVTEELVEKILQPGLETGAADVFLEFI 169
KL +K+ A + E+++ +L D S +TEEL++ + ++ + I
Sbjct: 151 ------KLLFKLYAEPSYETLKQMLQVFLYDQSLITEELLQGRWE-AIQRQPEHLKNFLI 203
Query: 170 CYSGGPLP----EELLPQVKCPVLIAWGDKDPWEPIELG-RAYGNFDSVEDFIVLPNVGH 224
PL L ++K I WG D + P++ G + N D V GH
Sbjct: 204 SAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNIDDAR-LHVFSKCGH 262
Query: 225 CPQDEAPHLVNPLVESFVTRHA 246
Q E N LV F+ RHA
Sbjct: 263 WAQWEHADEFNRLVIDFL-RHA 283
>pdb|1B6G|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Chloride
Length = 310
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 2 VLAKS-HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICN 60
V A+S RV + D G+G SDKP D+ YTFE + L + + +
Sbjct: 69 VFAESGARVIAPDFFGFGKSDKP-----VDEEDYTFEFHRNFLLALIERLDLRNITLVVQ 123
Query: 61 SIGGLVGLQAAVMEPEICRGMILLNISL 88
GG +GL + +P + +I++N L
Sbjct: 124 DWGGFLGLTLPMADPSRFKRLIIMNAXL 151
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 7 HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLV 66
+RV ++D+ GYG S P + Y E ++ F + QA FI + GG++
Sbjct: 82 YRVLAMDMKGYGESSAPP-----EIEEYCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGML 136
Query: 67 GLQAAVMEPEICRGMILLN 85
A+ PE R + LN
Sbjct: 137 VWYMALFYPERVRAVASLN 155
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 7 HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLV 66
+RV ++D+ GYG S P + Y E ++ F + QA FI + GG++
Sbjct: 67 YRVLAMDMKGYGESSAPP-----EIEEYCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGML 121
Query: 67 GLQAAVMEPEICRGMILLN 85
A+ PE R + LN
Sbjct: 122 VWYMALFYPERVRAVASLN 140
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 7 HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLV 66
+RV ++D+ GYG S P + Y E ++ F + QA FI + GG++
Sbjct: 286 YRVLAMDMKGYGESSAPP-----EIEEYCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGML 340
Query: 67 GLQAAVMEPEICRGMILLN 85
A+ PE R + LN
Sbjct: 341 VWYMALFYPERVRAVASLN 359
>pdb|4DNP|A Chain A, Crystal Structure Of Dad2
Length = 269
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 5 KSHRVYSIDLIGYGYSDKPNPRDFFD-KPFYTFETWASQLNDFCKDVVKDQAFFICNSIG 63
+ +RV DL+ G NP DFFD + + T + + L + D ++ +S+
Sbjct: 45 RDYRVVLYDLVCAG---SVNP-DFFDFRRYTTLDPYVDDLLHILDALGIDCCAYVGHSVS 100
Query: 64 GLVGLQAAVMEPEICRGMILLNISLRMLH 92
++G+ A++ PE+ +IL+ S R L+
Sbjct: 101 AMIGILASIRRPELFSKLILIGASPRFLN 129
>pdb|3V1K|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1K|B Chain B, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1N|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, After Exposure
To Its Substrate Hopda
Length = 286
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 78/202 (38%), Gaps = 27/202 (13%)
Query: 53 DQAFFICNSIGGLVGLQAAVMEPEICRGMILLN-ISLRMLHIKKQPWYGRPLIRSFQNLL 111
D+A + NS+GG L A+ P+ +IL+ L P G
Sbjct: 104 DRAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGI---------- 153
Query: 112 RNTAAGKLFYKMVA--TSESVRNILCQCYNDTSQVTEELVEKILQPGLETGAADVFLEFI 169
KL +K+ A + E+++ +L D S +TEEL++ + ++ + I
Sbjct: 154 ------KLLFKLYAEPSYETLKQMLQVFLYDQSLITEELLQGRWE-AIQRQPEHLKNFLI 206
Query: 170 CYSGGPLP----EELLPQVKCPVLIAWGDKDPWEPIELG-RAYGNFDSVEDFIVLPNVGH 224
PL L ++K I WG D + P++ G + N D V G
Sbjct: 207 SAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNIDDAR-LHVFSKCGQ 265
Query: 225 CPQDEAPHLVNPLVESFVTRHA 246
Q E N LV F+ RHA
Sbjct: 266 WAQWEHADEFNRLVIDFL-RHA 286
>pdb|1BEE|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr
pdb|1BEZ|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr At Ph 5
Length = 310
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 2 VLAKS-HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICN 60
V A+S RV + D G+G SDKP D+ YTFE + L + + +
Sbjct: 69 VFAESGARVIAPDFFGFGKSDKP-----VDEEDYTFEFHRNFLLALIERLDLRNITLVVQ 123
Query: 61 SIGGLVGLQAAVMEPEICRGMILLNISL 88
GG +GL + +P + +I++N L
Sbjct: 124 DWGGFLGLTLPMADPSRFKRLIIMNACL 151
>pdb|1EDB|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDD|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDE|A Chain A, Refined X-Ray Structures Of Haloalkane Dehalogenase At Ph
6.2 And Ph 8.2 And Implications For The Reaction
Mechanism
pdb|2DHC|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2DHE|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2EDA|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2EDC|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2HAD|A Chain A, Crystal Structure Of Haloalkane Dehalogenase: An Enzyme To
Detoxify Halogenated Alkanes
pdb|2PKY|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
pdb|2YXP|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
Length = 310
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 2 VLAKS-HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICN 60
V A+S RV + D G+G SDKP D+ YTFE + L + + +
Sbjct: 69 VFAESGARVIAPDFFGFGKSDKP-----VDEEDYTFEFHRNFLLALIERLDLRNITLVVQ 123
Query: 61 SIGGLVGLQAAVMEPEICRGMILLNISL 88
GG +GL + +P + +I++N L
Sbjct: 124 DWGGFLGLTLPMADPSRFKRLIIMNACL 151
>pdb|1CIJ|A Chain A, Haloalkane Dehalogenase Soaked With High Concentration Of
Bromide
pdb|1BE0|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Acetic Acid
Length = 310
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 2 VLAKS-HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICN 60
V A+S RV + D G+G SDKP D+ YTFE + L + + +
Sbjct: 69 VFAESGARVIAPDFFGFGKSDKP-----VDEEDYTFEFHRNFLLALIERLDLRNITLVVQ 123
Query: 61 SIGGLVGLQAAVMEPEICRGMILLNISL 88
GG +GL + +P + +I++N L
Sbjct: 124 DWGGFLGLTLPMADPSRFKRLIIMNACL 151
>pdb|1HDE|A Chain A, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
pdb|1HDE|B Chain B, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
Length = 310
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 2 VLAKS-HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICN 60
V A+S RV + D G+G SDKP D+ YTFE + L + + +
Sbjct: 69 VFAESGARVIAPDFFGFGKSDKP-----VDEEDYTFEFHRNFLLALIERLDLRNITLVVQ 123
Query: 61 SIGGLVGLQAAVMEPEICRGMILLNISL 88
GG +GL + +P + +I++N L
Sbjct: 124 DWGGFLGLTLPMADPSRFKRLIIMNACL 151
>pdb|2DHD|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
Length = 310
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 2 VLAKS-HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICN 60
V A+S RV + D G+G SDKP D+ YTFE + L + + +
Sbjct: 69 VFAESGARVIAPDFFGFGKSDKP-----VDEEDYTFEFHRNFLLALIERLDLRNITLVVQ 123
Query: 61 SIGGLVGLQAAVMEPEICRGMILLNISL 88
GG +GL + +P + +I++N L
Sbjct: 124 XWGGFLGLTLPMADPSRFKRLIIMNACL 151
>pdb|4G5X|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G5X|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G9E|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
pdb|4G9E|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
Length = 279
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 51/248 (20%), Positives = 98/248 (39%), Gaps = 37/248 (14%)
Query: 3 LAKSHRVYSIDLIGYGYS-DKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNS 61
+ K RV + DL G+G S D +P D+ Y+ E +A + + + + A S
Sbjct: 48 IGKKWRVIAPDLPGHGKSTDAIDP----DRS-YSMEGYADAMTEVMQQLGIADAVVFGWS 102
Query: 62 IGGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLI-RSFQNLLRNTAAGKLF 120
+GG +G++ PE +R L I P R + + F++ AG+
Sbjct: 103 LGGHIGIEMIARYPE-----------MRGLMITGTPPVAREEVGQGFKSGPDMALAGQEI 151
Query: 121 YKMVATSESVRNILCQCYN----DTSQVTEELVEKILQPGLETGAADVFLEFICYSGGPL 176
+ R+ + + D T+ +I+ F +F +GG
Sbjct: 152 FSERDVESYARSTCGEPFEASLLDIVARTDGRARRIM-----------FEKFGSGTGGN- 199
Query: 177 PEELLPQVKCPVLIAWGDKDPWEPIEL--GRAYGNFDSVEDFIVLPNVGHCPQDEAPHLV 234
+++ + + P+ + G +P+ ++ +GN + V+ N GH P EAP
Sbjct: 200 QRDIVAEAQLPIAVVNGRDEPFVELDFVSKVKFGNLWEGKTH-VIDNAGHAPFREAPAEF 258
Query: 235 NPLVESFV 242
+ + F+
Sbjct: 259 DAYLARFI 266
>pdb|3B12|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
pdb|3B12|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
Length = 304
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNS 61
+LA + V DL GYG S KP D Y+F AS + + + ++ + ++
Sbjct: 47 LLANEYTVVCADLRGYGGSSKPVGAP--DHANYSFRAMASDQRELMRTLGFERFHLVGHA 104
Query: 62 IGGLVGLQAAVMEPEICRGMILLNI 86
GG G + A+ P+ + +L+I
Sbjct: 105 RGGRTGHRMALDHPDSVLSLAVLDI 129
>pdb|4DNQ|A Chain A, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|B Chain B, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|C Chain C, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|D Chain D, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|E Chain E, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|F Chain F, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|G Chain G, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|H Chain H, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|I Chain I, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|J Chain J, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|K Chain K, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|L Chain L, Crystal Structure Of Dad2 S96a Mutant
Length = 269
Score = 34.7 bits (78), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 5 KSHRVYSIDLIGYGYSDKPNPRDFFD-KPFYTFETWASQLNDFCKDVVKDQAFFICNSIG 63
+ +RV DL+ G NP DFFD + + T + + L + D ++ +++
Sbjct: 45 RDYRVVLYDLVCAG---SVNP-DFFDFRRYTTLDPYVDDLLHILDALGIDCCAYVGHAVS 100
Query: 64 GLVGLQAAVMEPEICRGMILLNISLRMLH 92
++G+ A++ PE+ +IL+ S R L+
Sbjct: 101 AMIGILASIRRPELFSKLILIGASPRFLN 129
>pdb|3BF7|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF7|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSI 62
L H + +D+ +G S PR+ P + A L D + D+A FI +S+
Sbjct: 39 LVNDHNIIQVDVRNHGLS----PRE----PVMNYPAMAQDLVDTLDALQIDKATFIGHSM 90
Query: 63 GGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQ 96
GG + + P+ ++ ++I+ H+++
Sbjct: 91 GGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRH 124
>pdb|1Y37|A Chain A, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
pdb|1Y37|B Chain B, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
Length = 304
Score = 34.3 bits (77), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNS 61
+LA + V DL GYG S KP D Y+F AS + + + ++ + +
Sbjct: 47 LLANEYTVVCADLRGYGGSSKPVGAP--DHANYSFRAMASDQRELMRTLGFERFHLVGHD 104
Query: 62 IGGLVGLQAAVMEPEICRGMILLNI 86
GG G + A+ P+ + +L+I
Sbjct: 105 RGGRTGHRMALDHPDSVLSLAVLDI 129
>pdb|3W04|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W04|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W05|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
pdb|3W05|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
Length = 266
Score = 34.3 bits (77), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSI 62
L + HRV DL+ G NP F + + + + L + + F+ +S+
Sbjct: 40 LTRDHRVVLYDLVCAG---SVNPDHFDFRRYDNLDAYVDDLLAILDALRIPRCAFVGHSV 96
Query: 63 GGLVGLQAAVMEPEICRGMILLNISLRMLH 92
++G+ A++ P++ ++L+ S R L+
Sbjct: 97 SAMIGILASIRRPDLFAKLVLIGASPRFLN 126
>pdb|3V1L|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400
pdb|3V1M|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400,
After Exposure To Its Substrate Hopda
Length = 286
Score = 34.3 bits (77), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 78/202 (38%), Gaps = 27/202 (13%)
Query: 53 DQAFFICNSIGGLVGLQAAVMEPEICRGMILLN-ISLRMLHIKKQPWYGRPLIRSFQNLL 111
D+A + N++GG L A+ P+ +IL+ L P G
Sbjct: 104 DRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGI---------- 153
Query: 112 RNTAAGKLFYKMVA--TSESVRNILCQCYNDTSQVTEELVEKILQPGLETGAADVFLEFI 169
KL +K+ A + E+++ +L D S +TEEL++ + ++ + I
Sbjct: 154 ------KLLFKLYAEPSYETLKQMLQVFLYDQSLITEELLQGRWE-AIQRQPEHLKNFLI 206
Query: 170 CYSGGPLP----EELLPQVKCPVLIAWGDKDPWEPIELG-RAYGNFDSVEDFIVLPNVGH 224
PL L ++K I WG D + P++ G + N D V G
Sbjct: 207 SAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNIDDAR-LHVFSKCGQ 265
Query: 225 CPQDEAPHLVNPLVESFVTRHA 246
Q E N LV F+ RHA
Sbjct: 266 WAQWEHADEFNRLVIDFL-RHA 286
>pdb|4IHA|A Chain A, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IHA|B Chain B, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IH9|A Chain A, Crystal Structure Of Rice Dwarf14 (d14)
pdb|4IH9|B Chain B, Crystal Structure Of Rice Dwarf14 (d14)
Length = 268
Score = 34.3 bits (77), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSI 62
L + HRV DL+ G NP F + + + + L + + F+ +S+
Sbjct: 42 LTRDHRVVLYDLVCAG---SVNPDHFDFRRYDNLDAYVDDLLAILDALRIPRCAFVGHSV 98
Query: 63 GGLVGLQAAVMEPEICRGMILLNISLRMLH 92
++G+ A++ P++ ++L+ S R L+
Sbjct: 99 SAMIGILASIRRPDLFAKLVLIGASPRFLN 128
>pdb|4IH4|A Chain A, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|B Chain B, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|C Chain C, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|D Chain D, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
Length = 267
Score = 34.3 bits (77), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFD-KPFYTFETWASQLNDFCKDVVKDQAFFICNS 61
+++RV DL+ G NP D+FD + T + + L + + ++ +S
Sbjct: 42 FTQNYRVVLYDLVCAG---SVNP-DYFDFNRYTTLDPYVDDLLNIVDSLGIQNCAYVGHS 97
Query: 62 IGGLVGLQAAVMEPEICRGMILLNISLRMLH 92
+ ++G+ A++ PE+ +IL+ S R L+
Sbjct: 98 VSAMIGIIASIRRPELFSKLILIGFSPRFLN 128
>pdb|3KXP|A Chain A, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|B Chain B, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|C Chain C, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|D Chain D, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|E Chain E, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|F Chain F, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|G Chain G, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|H Chain H, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|I Chain I, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|J Chain J, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|K Chain K, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|L Chain L, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
Length = 314
Score = 34.3 bits (77), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 16/77 (20%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 11 SIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQA 70
++D G+G SDKP + Y +A + + + + A + +S+G + A
Sbjct: 99 AVDQRGHGLSDKP-------ETGYEANDYADDIAGLIRTLARGHAILVGHSLGARNSVTA 151
Query: 71 AVMEPEICRGMILLNIS 87
A P++ R ++ ++ +
Sbjct: 152 AAKYPDLVRSVVAIDFT 168
>pdb|4G8C|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G8C|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G9G|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
pdb|4G9G|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
Length = 279
Score = 34.3 bits (77), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 51/248 (20%), Positives = 97/248 (39%), Gaps = 37/248 (14%)
Query: 3 LAKSHRVYSIDLIGYGYS-DKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNS 61
+ K RV + DL G+G S D +P D+ Y+ E +A + + + + A S
Sbjct: 48 IGKKWRVIAPDLPGHGKSTDAIDP----DRS-YSMEGYADAMTEVMQQLGIADAVVFGWS 102
Query: 62 IGGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLI-RSFQNLLRNTAAGKLF 120
+GG +G++ PE +R L I P R + + F++ AG+
Sbjct: 103 LGGHIGIEMIARYPE-----------MRGLMITGTPPVAREEVGQGFKSGPDMALAGQEI 151
Query: 121 YKMVATSESVRNILCQCYN----DTSQVTEELVEKILQPGLETGAADVFLEFICYSGGPL 176
+ R+ + + D T+ +I+ F +F +GG
Sbjct: 152 FSERDVESYARSTCGEPFEASLLDIVARTDGRARRIM-----------FEKFGSGTGGN- 199
Query: 177 PEELLPQVKCPVLIAWGDKDPWEPIEL--GRAYGNFDSVEDFIVLPNVGHCPQDEAPHLV 234
+++ + + P+ + G P+ ++ +GN + V+ N GH P EAP
Sbjct: 200 QRDIVAEAQLPIAVVNGRDGPFVELDFVSKVKFGNLWEGKTH-VIDNAGHAPFREAPAEF 258
Query: 235 NPLVESFV 242
+ + F+
Sbjct: 259 DAYLARFI 266
>pdb|3BF8|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF8|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSI 62
L H + +D+ +G S PR+ P + A L D D+A FI +S+
Sbjct: 39 LVNDHNIIQVDVRNHGLS----PRE----PVMNYPAMAQDLVDTLDAQQIDKATFIGHSM 90
Query: 63 GGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQ 96
GG + + P+ ++ ++I+ H+++
Sbjct: 91 GGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRH 124
>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
Length = 311
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 82/208 (39%), Gaps = 28/208 (13%)
Query: 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNS 61
VLA+ V ++D GYG+SDK F++ Y A L + + + NS
Sbjct: 81 VLARHFHVLAVDQPGYGHSDKRAEHGQFNR--YA----AMALKGLFDQLGLGRVPLVGNS 134
Query: 62 IGGLVGLQAAVMEPEICRGMILLN-ISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLF 120
+GG ++ A+ P ++L+ L + P G + F
Sbjct: 135 LGGGTAVRFALDYPARAGRLVLMGPGGLSINLFAPDPTEGVKRLSKFS------------ 182
Query: 121 YKMVATSESVRNILCQCYNDTSQVTEELVEKIL----QPGLETGAADVFLEFIC--YSGG 174
+ T E++ L D + +T ELV++ P T + F + G
Sbjct: 183 --VAPTRENLEAFLRVMVYDKNLITPELVDQRFALASTPESLTATRAMGKSFAGADFEAG 240
Query: 175 PLPEELLPQVKCPVLIAWGDKDPWEPIE 202
+ E+ +++ PVL+ WG +D P++
Sbjct: 241 MMWREVY-RLRQPVLLIWGREDRVNPLD 267
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 8 RVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVG 67
RV +ID+ GYG S P + Y E ++ F + QA FI + G++
Sbjct: 285 RVLAIDMKGYGDSSSPP-----EIEEYAMELLCKEMVTFLDKLGIPQAVFIGHDWAGVMV 339
Query: 68 LQAAVMEPEICRGMILLN 85
A+ PE R + LN
Sbjct: 340 WNMALFYPERVRAVASLN 357
>pdb|3A2M|A Chain A, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2M|B Chain B, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2N|A Chain A, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|B Chain B, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|E Chain E, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|F Chain F, Crystal Structure Of Dbja (Wild Type Type Ii P21)
Length = 312
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 9/74 (12%)
Query: 13 DLIGYGYSDKPN-PRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAA 71
DLIG+G S KP+ FFD Y L+ F + A+ + G + A
Sbjct: 62 DLIGFGQSGKPDIAYRFFDHVRY--------LDAFIEQRGVTSAYLVAQDWGTALAFHLA 113
Query: 72 VMEPEICRGMILLN 85
P+ RG+ +
Sbjct: 114 ARRPDFVRGLAFME 127
>pdb|3AFI|E Chain E, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|A Chain A, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|B Chain B, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|F Chain F, Crystal Structure Of Dbja (His-Dbja)
Length = 316
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 9/74 (12%)
Query: 13 DLIGYGYSDKPN-PRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAA 71
DLIG+G S KP+ FFD Y L+ F + A+ + G + A
Sbjct: 62 DLIGFGQSGKPDIAYRFFDHVRY--------LDAFIEQRGVTSAYLVAQDWGTALAFHLA 113
Query: 72 VMEPEICRGMILLN 85
P+ RG+ +
Sbjct: 114 ARRPDFVRGLAFME 127
>pdb|3A2L|A Chain A, Crystal Structure Of Dbja (Mutant Dbja Delta)
pdb|3A2L|B Chain B, Crystal Structure Of Dbja (Mutant Dbja Delta)
Length = 309
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 9/74 (12%)
Query: 13 DLIGYGYSDKPN-PRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAA 71
DLIG+G S KP+ FFD Y L+ F + A+ + G + A
Sbjct: 62 DLIGFGQSGKPDIAYRFFDHVRY--------LDAFIEQRGVTSAYLVAQDWGTALAFHLA 113
Query: 72 VMEPEICRGMILLN 85
P+ RG+ +
Sbjct: 114 ARRPDFVRGLAFME 127
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 39/202 (19%), Positives = 84/202 (41%), Gaps = 19/202 (9%)
Query: 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIG 63
A+ +RV + DL G+G S Y+ T+ +Q++ +++ + +S+G
Sbjct: 51 AQGYRVVAPDLFGHGRSSH-----LEMVTSYSSLTFLAQIDRVIQELPDQPLLLVGHSMG 105
Query: 64 GLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKM 123
++ A + P+ + +IL+ + L KK+ + + + + L +T +F +
Sbjct: 106 AMLATAIASVRPKKIKELILVELPLPAEESKKESAVNQ--LTTCLDYLSSTPQHPIFPDV 163
Query: 124 VATSESVRNILCQCYNDTSQVTEELVEKILQP--GLETGAADVFLEFICYSG-GPLPE-- 178
+ +R + + S + L ++I QP G + D + G LP
Sbjct: 164 ATAASRLRQAIPSLSEEFSYI---LAQRITQPNQGGVRWSWDAIIRTRSILGLNNLPGGR 220
Query: 179 ----ELLPQVKCPVLIAWGDKD 196
E+L ++ P + +GD
Sbjct: 221 SQYLEMLKSIQVPTTLVYGDSS 242
>pdb|2WUD|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUD|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUE|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUE|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUF|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUF|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUG|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
pdb|2WUG|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
Length = 291
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 82/208 (39%), Gaps = 28/208 (13%)
Query: 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNS 61
VLA+ V ++D GYG+SDK F++ Y A L + + + N+
Sbjct: 61 VLARHFHVLAVDQPGYGHSDKRAEHGQFNR--YA----AMALKGLFDQLGLGRVPLVGNA 114
Query: 62 IGGLVGLQAAVMEPEICRGMILLN-ISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLF 120
+GG ++ A+ P ++L+ L + P G + F
Sbjct: 115 LGGGTAVRFALDYPARAGRLVLMGPGGLSINLFAPDPTEGVKRLSKF------------- 161
Query: 121 YKMVATSESVRNILCQCYNDTSQVTEELVEKIL----QPGLETGAADVFLEFIC--YSGG 174
+ T E++ L D + +T ELV++ P T + F + G
Sbjct: 162 -SVAPTRENLEAFLRVMVYDKNLITPELVDQRFALASTPESLTATRAMGKSFAGADFEAG 220
Query: 175 PLPEELLPQVKCPVLIAWGDKDPWEPIE 202
+ E+ +++ PVL+ WG +D P++
Sbjct: 221 MMWREVY-RLRQPVLLIWGREDRVNPLD 247
>pdb|3P2M|A Chain A, Crystal Structure Of A Novel Esterase Rv0045c From
Mycobacterium Tuberculosis
Length = 330
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 11 SIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQA 70
++DL G+G+S ++ P ET A L +++ F + S+GGL ++
Sbjct: 110 AVDLPGHGHSAWREDGNY--SPQLNSETLAPVL----RELAPGAEFVVGMSLGGLTAIRL 163
Query: 71 AVMEPEICRGMILLNIS 87
A M P++ ++L++++
Sbjct: 164 AAMAPDLVGELVLVDVT 180
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 3 LAKSHRVYSIDLIGYGYSDKPN--PRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICN 60
LA++ V + DLIG+G S+ P P E +N F + ++ + N
Sbjct: 55 LAENFFVVAPDLIGFGQSEYPETYPGHIMSWVGMRVEQILGLMNHFGIE----KSHIVGN 110
Query: 61 SIGGLVGLQAAVMEPE 76
S+GG V LQ V PE
Sbjct: 111 SMGGAVTLQLVVEAPE 126
>pdb|4FBM|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBM|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 293
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 99/279 (35%), Gaps = 68/279 (24%)
Query: 2 VLAKSHRVYSID-----LIGYGYSDKPNPRDFFDKPF----YTF-------------ETW 39
VL + +YS+ L+ +G++ P F + F YT E
Sbjct: 36 VLPGAEPLYSVGSRIGVLVSHGFTGSPQSMRFLAEGFARAGYTVATPRLTGHGTTPAEMA 95
Query: 40 ASQLNDFCKDVVK---------DQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRM 90
AS +D+ D+V D F S+GG + + AA PE G++ +N +LRM
Sbjct: 96 ASTASDWTADIVAAMRWLEERCDVLFMTGLSMGGALTVWAAGQFPERFAGIMPINAALRM 155
Query: 91 LHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVE 150
+ L + A +E S + E V+
Sbjct: 156 ---------------------ESPDLAALAFNPDAPAE--------LPGIGSDIKAEGVK 186
Query: 151 KILQPGLETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGR-AYGN 209
++ P A + G + E LLP+VKCP LI +D P G Y
Sbjct: 187 ELAYPVTPVPAIKHLITI-----GAVAEMLLPRVKCPALIIQSREDHVVPPHNGELIYNG 241
Query: 210 FDSVE-DFIVLPNVGHCPQ-DEAPHLVNPLVESFVTRHA 246
S E + + L N H D L+ +F+ +H+
Sbjct: 242 IGSTEKELLWLENSYHVATLDNDKELILERSLAFIRKHS 280
>pdb|3OM8|A Chain A, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
pdb|3OM8|B Chain B, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
Length = 266
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
Query: 2 VLAKSHRVYSIDLIGYGYSD-KPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICN 60
L + RV D G+G S P P YT + + + +A F+
Sbjct: 49 ALTRHFRVLRYDARGHGASSVPPGP--------YTLARLGEDVLELLDALEVRRAHFLGL 100
Query: 61 SIGGLVGLQAAVMEPEICRGMILLNIS 87
S+GG+VG A+ P+ ++L N S
Sbjct: 101 SLGGIVGQWLALHAPQRIERLVLANTS 127
>pdb|4FBL|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|C Chain C, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|D Chain D, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 281
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 98/278 (35%), Gaps = 68/278 (24%)
Query: 2 VLAKSHRVYSID-----LIGYGYSDKPNPRDFFDKPF----YTF-------------ETW 39
VL + +YS+ L+ +G++ P F + F YT E
Sbjct: 38 VLPGAEPLYSVGSRIGVLVSHGFTGSPQSMRFLAEGFARAGYTVATPRLTGHGTTPAEMA 97
Query: 40 ASQLNDFCKDVVK---------DQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRM 90
AS +D+ D+V D F S+GG + + AA PE G++ +N +LRM
Sbjct: 98 ASTASDWTADIVAAMRWLEERCDVLFMTGLSMGGALTVWAAGQFPERFAGIMPINAALRM 157
Query: 91 LHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVE 150
+ L + A +E S + E V+
Sbjct: 158 ---------------------ESPDLAALAFNPDAPAE--------LPGIGSDIKAEGVK 188
Query: 151 KILQPGLETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGR-AYGN 209
++ P A + G + E LLP+VKCP LI +D P G Y
Sbjct: 189 ELAYPVTPVPAIKHLITI-----GAVAEMLLPRVKCPALIIQSREDHVVPPHNGELIYNG 243
Query: 210 FDSVE-DFIVLPNVGHCPQ-DEAPHLVNPLVESFVTRH 245
S E + + L N H D L+ +F+ +H
Sbjct: 244 IGSTEKELLWLENSYHVATLDNDKELILERSLAFIRKH 281
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 19/90 (21%)
Query: 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVV-------KDQAF 56
+RV +ID GYG S K Y + A ++ + DVV +QAF
Sbjct: 58 GAGYRVVAIDQRGYGRSSK-----------YRVQK-AYRIKELVGDVVGVLDSYGAEQAF 105
Query: 57 FICNSIGGLVGLQAAVMEPEICRGMILLNI 86
+ + G V A + P+ C G++ +++
Sbjct: 106 VVGHDWGAPVAWTFAWLHPDRCAGVVGISV 135
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 19/90 (21%)
Query: 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVV-------KDQAF 56
+RV +ID GYG S K Y + A ++ + DVV +QAF
Sbjct: 52 GAGYRVVAIDQRGYGRSSK-----------YRVQK-AYRIKELVGDVVGVLDSYGAEQAF 99
Query: 57 FICNSIGGLVGLQAAVMEPEICRGMILLNI 86
+ + G V A + P+ C G++ +++
Sbjct: 100 VVGHDWGAPVAWTFAWLHPDRCAGVVGISV 129
>pdb|3U1T|A Chain A, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
pdb|3U1T|B Chain B, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
Length = 309
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNS 61
V+A +R + DLIG G S KP+ Y + + + F + D + +
Sbjct: 52 VVAAGYRAVAPDLIGXGDSAKPDIE-------YRLQDHVAYXDGFIDALGLDDXVLVIHD 104
Query: 62 IGGLVGLQAAVMEPE 76
G ++G + A + P+
Sbjct: 105 WGSVIGXRHARLNPD 119
>pdb|3QYJ|A Chain A, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120.
pdb|3QYJ|B Chain B, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120
Length = 291
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 53/259 (20%), Positives = 92/259 (35%), Gaps = 31/259 (11%)
Query: 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNS 61
+LA + V + DL GYG D P Y+ A + + +Q + + +
Sbjct: 47 LLANNFTVVATDLRGYG--DSSRPASVPHHINYSKRVMAQDQVEVMSKLGYEQFYVVGHD 104
Query: 62 IGGLVGLQAAVMEPEICRGMILLNI--SLRMLHIKKQ----PWYGRPLIRSFQNLLRNTA 115
G V + A+ P + + LL+I + +M Q +Y + NL
Sbjct: 105 RGARVAHRLALDHPHRVKKLALLDIAPTHKMYRTTDQEFATAYYHWFFLIQPDNLPETLI 164
Query: 116 AGKLFYKMVATSESVRNILCQCYNDTS----QVTEELVEKILQPGLETGAADVFLEFICY 171
Y + R L + D S Q E + QP + + +
Sbjct: 165 GANPEYYL-------RKCLEKWGKDFSAFHPQALAEYIRCFSQPAVIHATCEDYRAAATI 217
Query: 172 SGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIV------LPNVGHC 225
++ ++ CPVL+ WG+K +GR Y + + + LP GH
Sbjct: 218 DLEHDELDMKQKISCPVLVLWGEKGI-----IGRKYDVLATWRERAIDVSGQSLP-CGHF 271
Query: 226 PQDEAPHLVNPLVESFVTR 244
+EAP + +F+T
Sbjct: 272 LPEEAPEETYQAIYNFLTH 290
>pdb|2LD6|A Chain A, Solution Structure Of Histidine Phosphotransfer Domain Of
Chea
Length = 139
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 83 LLNISLRMLHIKKQPWYGRPLIRSFQNL--LRNTAAGKLFYKMVATSESVRNILCQCYND 140
L N++ +L ++K P + +F+ L L+ A F M ++ NIL + N
Sbjct: 17 LQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNS 76
Query: 141 TSQVTEELVEKI 152
++T +L++KI
Sbjct: 77 EIKITSDLLDKI 88
>pdb|2WTM|A Chain A, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|B Chain B, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|C Chain C, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|D Chain D, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTN|A Chain A, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
pdb|2WTN|B Chain B, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
Length = 251
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 178 EELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPL 237
E+ + + PVLI GD+D P E A+ + +P HC D LV
Sbjct: 182 EDFVDKYTKPVLIVHGDQDEAVPYEASVAFSKQYKNCKLVTIPGDTHC-YDHHLELVTEA 240
Query: 238 VESFV 242
V+ F+
Sbjct: 241 VKEFM 245
>pdb|3BDI|A Chain A, Crystal Structure Of Predicted Cib-Like Hydrolase
(Np_393672.1) From Thermoplasma Acidophilum At 1.45 A
Resolution
Length = 207
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 183 QVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAP 231
+++ L+ WG KD PI L + Y + S ++ GH E P
Sbjct: 145 KIRQKTLLVWGSKDHVVPIALSKEYASIISGSRLEIVEGSGHPVYIEKP 193
>pdb|1TQG|A Chain A, Chea Phosphotransferase Domain From Thermotoga Maritima
Length = 105
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 83 LLNISLRMLHIKKQPWYGRPLIRSFQNL--LRNTAAGKLFYKMVATSESVRNILCQCYND 140
L N++ +L ++K P + +F+ L L+ A F M ++ NIL + N
Sbjct: 18 LQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNS 77
Query: 141 TSQVTEELVEKI 152
++T +L++KI
Sbjct: 78 EIKITSDLLDKI 89
>pdb|3DBA|A Chain A, Crystal Structure Of The Cgmp-Bound Gaf A Domain From The
Photoreceptor Phosphodiesterase 6c
pdb|3DBA|B Chain B, Crystal Structure Of The Cgmp-Bound Gaf A Domain From The
Photoreceptor Phosphodiesterase 6c
Length = 180
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 140 DTSQVTEELVEKILQPGLETGAADVFLEFICYSGGPLPE------ELLPQVKCPVLIAWG 193
D + E++V K LQ + AAD FIC S +PE + P K +
Sbjct: 18 DEAGSMEKIVHKTLQRLSQLLAADRCSMFICRSRNGIPEVATRLLNVTPTSKFEDNLVNP 77
Query: 194 DKDPWEPIELGRAYGNFDSVEDFIVLPNV 222
DK+ P+++G A G + F +P+V
Sbjct: 78 DKETVFPLDIGIA-GWVAHTKKFFNIPDV 105
>pdb|3TRD|A Chain A, Structure Of An Alpha-Beta Serine Hydrolase Homologue From
Coxiella Burnetii
Length = 208
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 181 LPQVKCPVLIAWGDKDPWEPIELGRAYGN-FDSVEDFIVLPNVGH 224
L Q+ P LI GD+D P E +A+ N S +F+V+ H
Sbjct: 146 LTQMASPWLIVQGDQDEVVPFEQVKAFVNQISSPVEFVVMSGASH 190
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,204,964
Number of Sequences: 62578
Number of extensions: 347842
Number of successful extensions: 890
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 821
Number of HSP's gapped (non-prelim): 87
length of query: 261
length of database: 14,973,337
effective HSP length: 97
effective length of query: 164
effective length of database: 8,903,271
effective search space: 1460136444
effective search space used: 1460136444
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)