Query 024902
Match_columns 260
No_of_seqs 216 out of 1244
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 08:20:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024902.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024902hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2335 Secreted and surface p 99.9 4.3E-26 9.3E-31 195.8 9.7 137 43-193 45-185 (187)
2 PF02469 Fasciclin: Fasciclin 99.9 8.5E-24 1.8E-28 169.2 8.7 125 56-189 1-128 (128)
3 smart00554 FAS1 Four repeated 99.8 3.7E-21 7.9E-26 148.2 6.7 98 86-190 1-99 (99)
4 KOG1437 Fasciclin and related 99.2 1.6E-11 3.4E-16 123.6 6.0 133 44-189 372-507 (682)
5 KOG1437 Fasciclin and related 99.0 9.4E-10 2E-14 110.9 10.0 133 46-193 508-645 (682)
6 PRK14864 putative biofilm stre 55.0 20 0.00043 28.5 3.9 19 3-21 2-21 (104)
7 PRK15348 type III secretion sy 37.6 29 0.00063 31.7 2.7 36 58-97 32-67 (249)
8 cd03035 ArsC_Yffb Arsenate Red 31.3 94 0.002 24.2 4.4 58 47-118 27-84 (105)
9 PRK13183 psbN photosystem II r 25.8 81 0.0018 21.5 2.6 25 1-25 1-26 (46)
10 COG1512 Beta-propeller domains 25.7 1.4E+02 0.0031 27.6 5.1 18 105-122 123-140 (271)
11 PF07172 GRP: Glycine rich pro 24.7 65 0.0014 25.1 2.4 11 4-14 1-11 (95)
12 COG1888 Uncharacterized protei 21.6 20 0.00043 28.0 -1.0 23 171-193 67-89 (97)
13 PF02680 DUF211: Uncharacteriz 20.3 27 0.00058 27.4 -0.6 23 171-193 65-87 (95)
No 1
>COG2335 Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=4.3e-26 Score=195.79 Aligned_cols=137 Identities=23% Similarity=0.391 Sum_probs=122.1
Q ss_pred CCCCCHHHHHhhCCChHHHHHHHHHCCChHHHhcccCCCCCCeEEEecCcHHHhcCCccccccC----CHHHHHHHHhhc
Q 024902 43 PEHVNLTDLLSVAGPFHTFLNYLESTKVLETFQNQANNTDEGITIFVPKDDAFKSLKKPSLANL----TQDQLKQLCLFH 118 (260)
Q Consensus 43 ~~~~nI~~iL~~~g~fStF~~lL~~tgL~~~L~~~l~~t~~~~TVFAPTD~AF~~L~~~~l~~L----s~~~L~~LL~yH 118 (260)
-...+|.+...++++|++|..+++.++|.++|++. +.||||||||+||.+|+.++++.| ++.+|..+|.||
T Consensus 45 ~~~~~iV~~a~~~~~f~tl~~a~~aa~Lv~~L~~~-----gp~TVFaPtn~AFa~lp~~T~~~Ll~pen~~~L~~iLtYH 119 (187)
T COG2335 45 GNRADIVESAANNPSFTTLVAALKAAGLVDTLNET-----GPFTVFAPTNEAFAKLPAGTLDALLKPENKPLLTKILTYH 119 (187)
T ss_pred cchhHHHHHHccCcchHHHHHHHHhhhhHHHhcCC-----CCeEEecCCHHHHHhCChhHHHHHhCccchhhhheeeEEE
Confidence 35568888888999999999999999999999995 999999999999999999988887 689999999999
Q ss_pred ccCCccChhhhccccCCcceecccCCceeEEEEecCCeEEEeeccceeEEeeeeccCCCcEEEEeCccccCCCCc
Q 024902 119 ALPHYYSFADFKNLSQMSPVSTYAGGDYKLNFTDVSGAVHIDSGWSRTKVSSSVHSTDPVALYQVDKVLLPEAIF 193 (260)
Q Consensus 119 Ilp~~~~~~~l~~~s~~~~v~Tl~G~~l~lnvt~~g~~V~V~~G~~~A~V~~~v~~~~ngvIh~ID~VLlP~~lf 193 (260)
|+++++..+++... +.++|+.|..++++++. +.++|+ +++|+..++..+||+||+||+||+|+...
T Consensus 120 Vv~Gk~~~~~l~~~---~~v~t~~G~~~~i~~~~--~~~~Vn----~a~v~~~di~a~NgvIhvID~Vl~Pp~~~ 185 (187)
T COG2335 120 VVEGKITAADLKSS---GSVKTVQGADLKIKVTG--GGVYVN----DATVTIADINASNGVIHVIDKVLIPPMDL 185 (187)
T ss_pred EEcCcccHHHhhcc---ccceeecCceEEEEEcC--CcEEEe----eeEEEeccEeccCcEEEEEeeeccCCCcc
Confidence 99999999999864 68999999988888874 448888 48888888888899999999999998743
No 2
>PF02469 Fasciclin: Fasciclin domain; InterPro: IPR000782 The FAS1 (fasciclin-like) domain is an extracellular module of about 140 amino acid residues. It has been suggested that the FAS1 domain represents an ancient cell adhesion domain common to plants and animals []; related FAS1 domains are also found in bacteria []. The crystal structure of FAS1 domains 3 and 4 of fasciclin I from Drosophila melanogaster (Fruit fly) has been determined, revealing a novel domain fold consisting of a seven-stranded beta wedge and at least five alpha helices; two well-ordered N-acetylglucosamine groups attached to a conserved asparagine are located in the interface region between the two FAS1 domains []. Fasciclin I is an insect neural cell adhesion molecule involved in axonal guidance that is attached to the membrane by a GPI-anchored protein. FAS1 domains are present in many secreted and membrane-anchored proteins. These proteins are usually GPI anchored and consist of: (i) a single FAS1 domain, (ii) a tandem array of FAS1 domains, or (iii) FAS1 domain(s) interspersed with other domains. Proteins known to contain a FAS1 domain include: Fasciclin I (4 FAS1 domains). Human TGF-beta induced Ig-H3 (BIgH3) protein (4 FAS1 domains), where the FAS1 domains mediate cell adhesion through an interaction with alpha3/beta1 integrin; mutation in the FAS1 domains result in corneal dystrophy []. Volvox major cell adhesion protein (2 FAS1 domains) []. Arabidopsis fasciclin-like arabinogalactan proteins (2 FAS1 domains) []. Mammalian stabilin protein, a family of fasciclin-like hyaluronan receptor homologues (7 FAS1 domains)[]. Human extracellular matrix protein periostin (4 FAS1 domains). Bacterial immunogenic protein MPT70 (1 FAS1 domain) []. The FAS1 domains of both human periostin (Q15063 from SWISSPROT) and BIgH3 (Q15582 from SWISSPROT) proteins were found to contain vitamin K-dependent gamma-carboxyglutamate residues []. Gamma-carboxyglutamate residues are more commonly associated with GLA domains (IPR000294 from INTERPRO), where they occur through post-translational modification catalysed by the vitamin K-dependent enzyme gamma-glutamylcarboxylase.; PDB: 1O70_A 1W7D_A 1W7E_A 1NYO_A 1X3B_A 2VXP_A.
Probab=99.90 E-value=8.5e-24 Score=169.21 Aligned_cols=125 Identities=24% Similarity=0.454 Sum_probs=99.9
Q ss_pred CChHHHHHHHHHCCChHHHhcccCCCCCCeEEEecCcHHHhcCCccccccC--CHHHHHHHHhhcccCCccChhhhcccc
Q 024902 56 GPFHTFLNYLESTKVLETFQNQANNTDEGITIFVPKDDAFKSLKKPSLANL--TQDQLKQLCLFHALPHYYSFADFKNLS 133 (260)
Q Consensus 56 g~fStF~~lL~~tgL~~~L~~~l~~t~~~~TVFAPTD~AF~~L~~~~l~~L--s~~~L~~LL~yHIlp~~~~~~~l~~~s 133 (260)
++||+|.++|+++|+.+.|++. .+.||||||+|+||++++....+.+ +.++++++|+||++++.++.+++....
T Consensus 1 ~~~s~f~~~l~~~~l~~~l~~~----~~~~TvfaP~d~a~~~~~~~~~~~~~~~~~~l~~~l~~hiv~~~~~~~~l~~~~ 76 (128)
T PF02469_consen 1 PDLSTFSRLLEQAGLADLLNDS----DGNYTVFAPTDDAFQKLSQETNSSLADSKEQLKSLLKYHIVPGSITSSDLRNGK 76 (128)
T ss_dssp -TTHHHHHHHHHTTCHHHHGCS----SSSEEEEEE-HHHHHHSHHHHHHHHHTHHHHHHHHHHHTEEES---HCHHHCHH
T ss_pred CCHHHHHHHHHHcCCHHHHhcC----CCCEEEEEECHHHHHhccccccchhhhhhhhHhhhhhhEEEcCceehhhhcccc
Confidence 4799999999999999999532 4899999999999999865544544 689999999999999999999998741
Q ss_pred CCcceec-ccCCceeEEEEecCCeEEEeeccceeEEeeeeccCCCcEEEEeCccccC
Q 024902 134 QMSPVST-YAGGDYKLNFTDVSGAVHIDSGWSRTKVSSSVHSTDPVALYQVDKVLLP 189 (260)
Q Consensus 134 ~~~~v~T-l~G~~l~lnvt~~g~~V~V~~G~~~A~V~~~v~~~~ngvIh~ID~VLlP 189 (260)
..++| +.|+.+.++....++.+.|++ +++|++.++..+||+||+||+||+|
T Consensus 77 --~~~~t~~~g~~~~v~~~~~~~~~~v~~---~a~i~~~~~~~~nG~ih~id~vL~P 128 (128)
T PF02469_consen 77 --QTLETLLNGQPLRVSSSPSNGTIYVNG---KARIVKSDIEASNGVIHIIDDVLIP 128 (128)
T ss_dssp --EEEEBSSTTCEEEEEEEGGTTEEEECC---EEEESEEEEEESSEEEEEESS-TSS
T ss_pred --ccceeccCCCEEEEEEEecCCceEecC---ceEEEeCCEEeCCEEEEEECceECc
Confidence 37898 788888888774467888885 5888877778889999999999998
No 3
>smart00554 FAS1 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
Probab=99.84 E-value=3.7e-21 Score=148.25 Aligned_cols=98 Identities=32% Similarity=0.519 Sum_probs=81.4
Q ss_pred EEEecCcHHHhcCCccccccCCHH-HHHHHHhhcccCCccChhhhccccCCcceecccCCceeEEEEecCCeEEEeeccc
Q 024902 86 TIFVPKDDAFKSLKKPSLANLTQD-QLKQLCLFHALPHYYSFADFKNLSQMSPVSTYAGGDYKLNFTDVSGAVHIDSGWS 164 (260)
Q Consensus 86 TVFAPTD~AF~~L~~~~l~~Ls~~-~L~~LL~yHIlp~~~~~~~l~~~s~~~~v~Tl~G~~l~lnvt~~g~~V~V~~G~~ 164 (260)
|||||+|+||+++....++++..+ .++++|+|||++++++.++|..+ ..++|+.|..++++.....+.+.+++
T Consensus 1 TvfaP~d~Af~~~~~~~~~~l~~~~~l~~ll~~Hiv~~~~~~~~l~~~---~~~~Tl~g~~l~v~~~~~~~~i~in~--- 74 (99)
T smart00554 1 TVFAPTDEAFQKLPPGTLNSLLADPKLKNLLLYHVVPGRLSSADLLNG---GTLPTLAGSKLRVTRSGDSGTVTVNG--- 74 (99)
T ss_pred CEeCcCHHHHHhcCHHHHHHHhCCHHHHHHHHhcEeCceEcHHHhccC---CccccCCCCEEEEEEeCCCCeEEEcc---
Confidence 899999999999987656666433 89999999999999999999873 68999999877766654326788874
Q ss_pred eeEEeeeeccCCCcEEEEeCccccCC
Q 024902 165 RTKVSSSVHSTDPVALYQVDKVLLPE 190 (260)
Q Consensus 165 ~A~V~~~v~~~~ngvIh~ID~VLlP~ 190 (260)
++|+..++..+||+||+||+||+|+
T Consensus 75 -~~v~~~di~~~nGvih~Id~vL~P~ 99 (99)
T smart00554 75 -ARIVEADIAATNGVVHVIDRVLLPP 99 (99)
T ss_pred -eEEEECCEecCCeEEEEECceeCCC
Confidence 6888777777889999999999986
No 4
>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.20 E-value=1.6e-11 Score=123.56 Aligned_cols=133 Identities=18% Similarity=0.203 Sum_probs=101.1
Q ss_pred CCCCHHHHHhhCCChHHHHHHHHHCCChHHHhcccCCCCCCeEEEecCcHHHhcCCccccccCCHHHHHHHHhhcccCCc
Q 024902 44 EHVNLTDLLSVAGPFHTFLNYLESTKVLETFQNQANNTDEGITIFVPKDDAFKSLKKPSLANLTQDQLKQLCLFHALPHY 123 (260)
Q Consensus 44 ~~~nI~~iL~~~g~fStF~~lL~~tgL~~~L~~~l~~t~~~~TVFAPTD~AF~~L~~~~l~~Ls~~~L~~LL~yHIlp~~ 123 (260)
...++.++..++. .+++.+++.+-|+.+.|... +.+|+|+|+|++|+.+..... +..++++|+||+++.+
T Consensus 372 ~~~~l~~La~e~~-~st~~rlv~elgll~~L~~n-----~e~t~~lp~n~~fd~~~~~~~----r~l~~qIL~~HII~~~ 441 (682)
T KOG1437|consen 372 SLKNLMSLAREDE-ISTSMRLVAELGLLTALAPN-----DEATLLLPTNNLFDDLTPLES----RRLAEQILYNHIIPEY 441 (682)
T ss_pred hHHHHHHHHhccc-ccHHHHHHHhccceEEEcCC-----CceEEeeehhhhccCCChhhh----HHHHHHHHHHhCcchh
Confidence 3557777776655 79999999999988866653 559999999999999764322 3338999999999999
Q ss_pred cChhhhccccCCcceecccCCceeEEEEecCCe---EEEeeccceeEEeeeeccCCCcEEEEeCccccC
Q 024902 124 YSFADFKNLSQMSPVSTYAGGDYKLNFTDVSGA---VHIDSGWSRTKVSSSVHSTDPVALYQVDKVLLP 189 (260)
Q Consensus 124 ~~~~~l~~~s~~~~v~Tl~G~~l~lnvt~~g~~---V~V~~G~~~A~V~~~v~~~~ngvIh~ID~VLlP 189 (260)
.+.++..++. ..++|+.|..+..-+.+..+. ..+..|.. +.|+.++....||+||.||+||.|
T Consensus 442 ~~~~~~y~~~--~~v~t~g~~~l~~fv~r~~~s~~~t~i~~~~~-~~Ii~aDi~~~nGvvH~id~vl~p 507 (682)
T KOG1437|consen 442 LTSSSMYNGQ--TTVRTLGKNKLLYFVYRHSVSANVTDILIGNE-ACIIEADISVKNGVVHIIDRVLDP 507 (682)
T ss_pred hhhhhhhccc--ceeeccCCeEEEEEEecccccccceeeeccce-eeEEecccceecCceEEeeEEcCc
Confidence 9999998863 489999886655444432222 22333334 888888888999999999999999
No 5
>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.03 E-value=9.4e-10 Score=110.88 Aligned_cols=133 Identities=18% Similarity=0.219 Sum_probs=93.8
Q ss_pred CCHHHHHhhCCChHHHHHHHHHCCChHHHhcccCCCCCCeEEEecCcHHHhcCCccccccCCHHHHHHHHhhcccCCccC
Q 024902 46 VNLTDLLSVAGPFHTFLNYLESTKVLETFQNQANNTDEGITIFVPKDDAFKSLKKPSLANLTQDQLKQLCLFHALPHYYS 125 (260)
Q Consensus 46 ~nI~~iL~~~g~fStF~~lL~~tgL~~~L~~~l~~t~~~~TVFAPTD~AF~~L~~~~l~~Ls~~~L~~LL~yHIlp~~~~ 125 (260)
.++.+.|++++.+|.|.++++..++.+++... +.||+|||||+||.+...+...--.+..+..+++||++++.+.
T Consensus 508 ~~l~~~l~~d~r~s~~~~~le~~~l~e~l~~~-----~~~t~fvPt~ka~~~~~~~~~~~~~~~~l~~~l~yH~v~~~~~ 582 (682)
T KOG1437|consen 508 VSLMEDLKTDGRISGTVQGLEGVLLPEELTPE-----GNYTLFVPTNKAWQKSTKDEKSLFHKKALQDFLKYHLVPGQSR 582 (682)
T ss_pred ccHHHHHhhccchhhhHHhhhhcCChhhhccC-----CceEEEeecccccccCCcchhhcchHHHHHHHHHhccccceee
Confidence 68999999999999999999999999999664 8999999999999997754433125788999999999998775
Q ss_pred hhhhccccCCcceecccCCceeEEEEecCCeEEEee----cc-ceeEEeeeeccCCCcEEEEeCccccCCCCc
Q 024902 126 FADFKNLSQMSPVSTYAGGDYKLNFTDVSGAVHIDS----GW-SRTKVSSSVHSTDPVALYQVDKVLLPEAIF 193 (260)
Q Consensus 126 ~~~l~~~s~~~~v~Tl~G~~l~lnvt~~g~~V~V~~----G~-~~A~V~~~v~~~~ngvIh~ID~VLlP~~lf 193 (260)
+.-. ..-.+.. + +.+++. ++.+.+.. |. ...+++...+..-||++|+||+||-|++++
T Consensus 583 ---ls~~---~~~~v~~-~-~k~s~~--~~~~~~~~~~~~~~vn~e~~~~~~i~~~n~~~h~i~~vl~p~~l~ 645 (682)
T KOG1437|consen 583 ---LSLG---SSPYVMI-Q-VKLSLR--GDHLFFSLVNPRGDVNKERLVGIDIMGTNGVVHVIDLVLKPPDLP 645 (682)
T ss_pred ---eecc---cccceee-e-eeEEEe--cccEEeeeeccccceeeeeeeccceeeecceeEEEEEEcccCcch
Confidence 2211 1111111 1 334433 22232221 22 234455555666789999999999998554
No 6
>PRK14864 putative biofilm stress and motility protein A; Provisional
Probab=54.95 E-value=20 Score=28.54 Aligned_cols=19 Identities=26% Similarity=0.163 Sum_probs=9.8
Q ss_pred cchhhHHHHH-HHHHHHHhh
Q 024902 3 KMEVSMALMI-SALLLLFSS 21 (260)
Q Consensus 3 ~m~~~~~~~~-~~~~~~~~~ 21 (260)
||-+++++++ ..++|..||
T Consensus 2 ~~~mk~~~~l~~~l~LS~~s 21 (104)
T PRK14864 2 NMVMRRFASLLLTLLLSACS 21 (104)
T ss_pred chHHHHHHHHHHHHHHhhhh
Confidence 4445554444 335566666
No 7
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=37.56 E-value=29 Score=31.71 Aligned_cols=36 Identities=14% Similarity=0.278 Sum_probs=25.5
Q ss_pred hHHHHHHHHHCCChHHHhcccCCCCCCeEEEecCcHHHhc
Q 024902 58 FHTFLNYLESTKVLETFQNQANNTDEGITIFVPKDDAFKS 97 (260)
Q Consensus 58 fStF~~lL~~tgL~~~L~~~l~~t~~~~TVFAPTD~AF~~ 97 (260)
-......|++.|+.-+.... ++++||.+|.++.-+.
T Consensus 32 A~~I~a~L~~~gI~y~~~~~----~~G~tI~Vp~~~~~~A 67 (249)
T PRK15348 32 ANQMLALLMQHHIDAEKKQE----EDGVTLRVEQSQFINA 67 (249)
T ss_pred HHHHHHHHHHcCCCceEeeC----CCCeEEEecHHHHHHH
Confidence 56777778888876554321 3789999999996663
No 8
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=31.29 E-value=94 Score=24.16 Aligned_cols=58 Identities=16% Similarity=0.145 Sum_probs=38.5
Q ss_pred CHHHHHhhCCChHHHHHHHHHCCChHHHhcccCCCCCCeEEEecCcHHHhcCCccccccCCHHHHHHHHhhc
Q 024902 47 NLTDLLSVAGPFHTFLNYLESTKVLETFQNQANNTDEGITIFVPKDDAFKSLKKPSLANLTQDQLKQLCLFH 118 (260)
Q Consensus 47 nI~~iL~~~g~fStF~~lL~~tgL~~~L~~~l~~t~~~~TVFAPTD~AF~~L~~~~l~~Ls~~~L~~LL~yH 118 (260)
.+.++++....-.++.++++..|+.+.++.. ...|+.+.....+.++.+++.++|.-|
T Consensus 27 ~~~di~~~p~s~~eL~~~l~~~g~~~li~~~--------------~~~yk~l~l~~~~~~s~~e~~~~l~~~ 84 (105)
T cd03035 27 TFHDYRKDGLDAATLERWLAKVGWETLLNKR--------------GTTWRKLDDAQKAALDAAKAIALMLEH 84 (105)
T ss_pred EEEecccCCCCHHHHHHHHHHhChHHHHccC--------------chHHHhCChhhhccCCHHHHHHHHHhC
Confidence 4556667777788888888888876666663 456777654333556766666666544
No 9
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=25.80 E-value=81 Score=21.51 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=13.9
Q ss_pred CccchhhHHHHHHHHHHHHhh-hhhc
Q 024902 1 MEKMEVSMALMISALLLLFSS-ANAQ 25 (260)
Q Consensus 1 ~~~m~~~~~~~~~~~~~~~~~-~~~~ 25 (260)
|+.||-...+.+++.++|++. +++-
T Consensus 1 ~~~me~A~~~~i~i~~lL~~~Tgyai 26 (46)
T PRK13183 1 MEAMSPALSLAITILAILLALTGFGI 26 (46)
T ss_pred CCccchhHHHHHHHHHHHHHHhhhee
Confidence 778886666655544444433 4443
No 10
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=25.66 E-value=1.4e+02 Score=27.63 Aligned_cols=18 Identities=22% Similarity=0.130 Sum_probs=15.4
Q ss_pred cCCHHHHHHHHhhcccCC
Q 024902 105 NLTQDQLKQLCLFHALPH 122 (260)
Q Consensus 105 ~Ls~~~L~~LL~yHIlp~ 122 (260)
.+++.+..+|+++||.|.
T Consensus 123 ~ltD~~a~~iIr~~i~P~ 140 (271)
T COG1512 123 VLTDAQAGRIIRETIAPA 140 (271)
T ss_pred ccChHHHHHHHHhhhCcc
Confidence 357899999999999994
No 11
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=24.67 E-value=65 Score=25.07 Aligned_cols=11 Identities=18% Similarity=0.280 Sum_probs=6.6
Q ss_pred chhhHHHHHHH
Q 024902 4 MEVSMALMISA 14 (260)
Q Consensus 4 m~~~~~~~~~~ 14 (260)
|..|.++|+.+
T Consensus 1 MaSK~~llL~l 11 (95)
T PF07172_consen 1 MASKAFLLLGL 11 (95)
T ss_pred CchhHHHHHHH
Confidence 77566665544
No 12
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.60 E-value=20 Score=28.01 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=16.6
Q ss_pred eeccCCCcEEEEeCccccCCCCc
Q 024902 171 SVHSTDPVALYQVDKVLLPEAIF 193 (260)
Q Consensus 171 ~v~~~~ngvIh~ID~VLlP~~lf 193 (260)
..++.-+|+||.||.|..=..+.
T Consensus 67 ~~iE~~Gg~IHSiDevvaGk~iv 89 (97)
T COG1888 67 EVIEELGGAIHSIDEVVAGKRIV 89 (97)
T ss_pred HHHHHcCCeeeehhhhhhcceee
Confidence 34566789999999997544443
No 13
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=20.30 E-value=27 Score=27.43 Aligned_cols=23 Identities=13% Similarity=0.094 Sum_probs=14.8
Q ss_pred eeccCCCcEEEEeCccccCCCCc
Q 024902 171 SVHSTDPVALYQVDKVLLPEAIF 193 (260)
Q Consensus 171 ~v~~~~ngvIh~ID~VLlP~~lf 193 (260)
..++..+|+||.||.|-.=..+.
T Consensus 65 ~~Ie~~Gg~IHSIDeVvaG~~iv 87 (95)
T PF02680_consen 65 EAIEELGGVIHSIDEVVAGKRIV 87 (95)
T ss_dssp HHHHHTT-EEEEEEEEEEESS--
T ss_pred HHHHHcCCeEEeeeeeeecceee
Confidence 34556789999999997544443
Done!