Query 024902
Match_columns 260
No_of_seqs 216 out of 1244
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 16:25:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024902.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024902hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w7d_A Fasciclin-like protein; 100.0 4.4E-30 1.5E-34 209.8 6.2 132 45-191 2-137 (137)
2 2vxp_A Transforming growth fac 100.0 8.5E-29 2.9E-33 201.0 12.4 129 46-188 2-132 (132)
3 1nyo_A Immunogenic protein MPT 100.0 6.5E-29 2.2E-33 209.1 6.7 131 44-191 26-163 (163)
4 1o70_A Fasciclin I, FAS I, FCN 99.9 1.3E-24 4.6E-29 199.5 11.3 139 45-191 5-158 (324)
5 1o70_A Fasciclin I, FAS I, FCN 99.9 8.1E-25 2.8E-29 201.0 9.2 145 45-194 158-314 (324)
6 3bpd_A Uncharacterized protein 17.2 21 0.00072 27.1 -0.7 19 171-189 67-85 (100)
7 2raq_A Conserved protein MTH88 16.7 20 0.00068 27.1 -0.9 24 171-194 67-90 (97)
8 1rw1_A Conserved hypothetical 14.5 1.5E+02 0.0052 21.8 3.6 56 49-118 30-85 (114)
9 3ygs_P Procaspase 9; apoptosis 12.2 1.8E+02 0.006 21.1 3.3 29 47-75 58-91 (97)
10 2p1h_A APAF-1, apoptotic prote 11.1 1.7E+02 0.006 20.6 2.9 26 44-69 54-81 (94)
No 1
>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter sphaeroides} PDB: 1w7e_A
Probab=99.96 E-value=4.4e-30 Score=209.82 Aligned_cols=132 Identities=23% Similarity=0.412 Sum_probs=115.6
Q ss_pred CCCHHHHHhhCCChHHHHHHHHHCCChHHHhcccCCCCCCeEEEecCcHHHhcCCccccccC----CHHHHHHHHhhccc
Q 024902 45 HVNLTDLLSVAGPFHTFLNYLESTKVLETFQNQANNTDEGITIFVPKDDAFKSLKKPSLANL----TQDQLKQLCLFHAL 120 (260)
Q Consensus 45 ~~nI~~iL~~~g~fStF~~lL~~tgL~~~L~~~l~~t~~~~TVFAPTD~AF~~L~~~~l~~L----s~~~L~~LL~yHIl 120 (260)
..||.++|+++++||+|+++|+++|+.++|++. ++||||||+|+||++++.+.+++| ++++++++|+|||+
T Consensus 2 ~~~i~~~l~~~~~~s~f~~~l~~agl~~~L~~~-----~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~~~l~~lL~yHvv 76 (137)
T 1w7d_A 2 TGDIVETATGAGSFTTLLTAAEAAGLVDTLKGD-----GPFTVFAPTDAAFAALPEGTVEDLLKPENKEKLTEILTYHVV 76 (137)
T ss_dssp CSTTGGGGGSCSSSTTTTHHHHHTTTHHHHTSS-----SCEEEECCCHHHHTTSTTTHHHHTTSHHHHHHHHHHHHHHEE
T ss_pred CCCHHHHHHhCCCHHHHHHHHHHcCCHHHHcCC-----CCEEEEEECHHHHHHcCHhHHHHHhCcCCHHHHHHHHHhhEe
Confidence 358999999999999999999999999999985 899999999999999988777777 67899999999999
Q ss_pred CCccChhhhccccCCcceecccCCceeEEEEecCCeEEEeeccceeEEeeeeccCCCcEEEEeCccccCCC
Q 024902 121 PHYYSFADFKNLSQMSPVSTYAGGDYKLNFTDVSGAVHIDSGWSRTKVSSSVHSTDPVALYQVDKVLLPEA 191 (260)
Q Consensus 121 p~~~~~~~l~~~s~~~~v~Tl~G~~l~lnvt~~g~~V~V~~G~~~A~V~~~v~~~~ngvIh~ID~VLlP~~ 191 (260)
+++++.++|..+ ..++|++|+. ++++.++| +.|++ ++|+..++...||+||+||+||+|+.
T Consensus 77 ~~~~~~~~l~~~---~~~~tl~G~~--l~v~~~~g-v~vn~----a~v~~~di~~~NGvIHvID~VL~P~s 137 (137)
T 1w7d_A 77 PGEVMSSDLTEG---MTAETVEGGA--LTVTLEGG-PKVNG----VSISQPDVDASNGVIHVIDGVLMPGA 137 (137)
T ss_dssp ESCCCTTTSCSS---EEEECTTSCE--EEEECTTS-CEETT----EECSBCCCBCSSSEEEBCSSCCSSCC
T ss_pred CcEEcHHHhcCC---CeeeccCCce--EEEEecCC-EEEeC----cEEEECCeecCCeEEEEECeeeCCCC
Confidence 999999999874 5799999875 45555566 88874 78887777788999999999999974
No 2
>2vxp_A Transforming growth factor-beta-induced protein IG-H3; RGD-containing collagen-associated protein, FAS1, BIGH3, vision, amyloid, RGD-CAP, secreted; 2.5A {Homo sapiens} PDB: 1x3b_A
Probab=99.96 E-value=8.5e-29 Score=200.99 Aligned_cols=129 Identities=16% Similarity=0.258 Sum_probs=111.9
Q ss_pred CCHHHHHhhCCChHHHHHHHHHCCChHHHhcccCCCCCCeEEEecCcHHHhcCCccccccC--CHHHHHHHHhhcccCCc
Q 024902 46 VNLTDLLSVAGPFHTFLNYLESTKVLETFQNQANNTDEGITIFVPKDDAFKSLKKPSLANL--TQDQLKQLCLFHALPHY 123 (260)
Q Consensus 46 ~nI~~iL~~~g~fStF~~lL~~tgL~~~L~~~l~~t~~~~TVFAPTD~AF~~L~~~~l~~L--s~~~L~~LL~yHIlp~~ 123 (260)
.||.++|+++++||+|+++|+++|+.++|++. ++||||||+|+||++++.+.++.| ++++++++|+|||+++.
T Consensus 2 ~ti~~~l~~~~~fs~~~~~l~~agl~~~L~~~-----~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~l~~iL~yHvv~~~ 76 (132)
T 2vxp_A 2 GTVMDVLKGDNRFSMLVAAIQSAGLTETLNRE-----GVYTVFAPTNEAFRALPPRERSRLLGDAKELANILKYHIGDEI 76 (132)
T ss_dssp CCHHHHHTTSTTCHHHHHHHHHHTCHHHHHSS-----CCEEEEEECHHHHHHSCHHHHHHHHTCHHHHHHHHHHSBBSSC
T ss_pred ccHHHHHHcCCCHHHHHHHHHHcCcHHHHcCC-----CCEEEEeECHHHHHhhCHHHHHHHhcCHHHHHHHHHhcCcCce
Confidence 48999999999999999999999999999984 899999999999999998776665 78999999999999999
Q ss_pred cChhhhccccCCcceecccCCceeEEEEecCCeEEEeeccceeEEeeeeccCCCcEEEEeCcccc
Q 024902 124 YSFADFKNLSQMSPVSTYAGGDYKLNFTDVSGAVHIDSGWSRTKVSSSVHSTDPVALYQVDKVLL 188 (260)
Q Consensus 124 ~~~~~l~~~s~~~~v~Tl~G~~l~lnvt~~g~~V~V~~G~~~A~V~~~v~~~~ngvIh~ID~VLl 188 (260)
++.+++... ..++|++|+.+.+ +.+++.+.|++ ++|+..++...||+||+||+||+
T Consensus 77 ~~~~~l~~~---~~~~tl~G~~l~v--~~~~~~v~vn~----a~v~~~di~a~NGvIHvID~VLl 132 (132)
T 2vxp_A 77 LVSGGIGAL---VRLKSLQGDKLEV--SLKNNVVSVNK----EPVAEPDIMATNGVVHVITNVLQ 132 (132)
T ss_dssp CCSTTCSSC---EEEEBTTSSEEEE--EEETTEEEESS----CBEEEEEEEETTEEEEEESSCC-
T ss_pred eehhhccCC---ceEecCCCCEEEE--EEeCCEEEEec----cEEEEcceecCCEEEEEECcEeC
Confidence 988888753 6899999976554 44577888874 78887777778999999999985
No 3
>1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin domain, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.118.1.1
Probab=99.95 E-value=6.5e-29 Score=209.11 Aligned_cols=131 Identities=21% Similarity=0.324 Sum_probs=114.0
Q ss_pred CCCCHHHHHhhCCChHHHHHHHH-----HCCChHHHhcccCCCCCCeEEEecCcHHHhcCCccccccC--CHHHHHHHHh
Q 024902 44 EHVNLTDLLSVAGPFHTFLNYLE-----STKVLETFQNQANNTDEGITIFVPKDDAFKSLKKPSLANL--TQDQLKQLCL 116 (260)
Q Consensus 44 ~~~nI~~iL~~~g~fStF~~lL~-----~tgL~~~L~~~l~~t~~~~TVFAPTD~AF~~L~~~~l~~L--s~~~L~~LL~ 116 (260)
...+|.++|+++++||+|+++|+ ++|+.++|++. + ||||||+|+||++++.+.++.| ++++|+++|+
T Consensus 26 ~~~~i~~~l~~~~~~s~f~~~l~~~~~~~agl~~~L~~~-----g-~TvFAPtn~AF~~l~~~~~~~L~~~~~~L~~iL~ 99 (163)
T 1nyo_A 26 SQDPVAVAASNNPELTTLTAALSGQLNPQVNLVDTLNSG-----Q-YTVFAPTNAAFSKLPASTIDELKTNSSLLTSILT 99 (163)
T ss_dssp HHSCHHHHHTTSTTTHHHHHHHHSSSCTTCCCHHHHTSS-----S-EEECCBCHHHHHHSCHHHHHHHTTCSSHHHHHHH
T ss_pred CCcCHHHHHHhCCCHHHHHHHHHhccccccCHHHHhCCC-----C-cEEEEECHHHHHhccHHHHHHHhcCHHHHHHHHH
Confidence 55699999999999999999999 99999999984 6 9999999999999987777776 5789999999
Q ss_pred hcccCCccChhhhccccCCcceecccCCceeEEEEecCCeEEEeeccceeEEeeeeccCCCcEEEEeCccccCCC
Q 024902 117 FHALPHYYSFADFKNLSQMSPVSTYAGGDYKLNFTDVSGAVHIDSGWSRTKVSSSVHSTDPVALYQVDKVLLPEA 191 (260)
Q Consensus 117 yHIlp~~~~~~~l~~~s~~~~v~Tl~G~~l~lnvt~~g~~V~V~~G~~~A~V~~~v~~~~ngvIh~ID~VLlP~~ 191 (260)
|||++++++.++|. +.++|++|+.+ +++.+++.++|++ ++|+..++...||+||+||+||+|+.
T Consensus 100 yHvv~g~~~~~~l~-----g~~~Tl~G~~l--~v~~~~~~v~vn~----a~V~~~di~a~NGvIHvID~VL~P~~ 163 (163)
T 1nyo_A 100 YHVVAGQTSPANVV-----GTRQTLQGASV--TVTGQGNSLKVGN----ADVVCGGVSTANATVYMIDSVLMPPA 163 (163)
T ss_dssp HTEEESCCCTTTSC-----EEEECTTSSEE--EEEECSSCEEETT----EECSSBCCCCSSEEEBCBSSCCCCCC
T ss_pred hceECCEEcHHHhC-----CccccCCCCEE--EEEEECCEEEEec----cEEEECceEcCCEEEEEECcEeCCCC
Confidence 99999999999986 37999998754 4455567788874 88888777788999999999999974
No 4
>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1
Probab=99.91 E-value=1.3e-24 Score=199.49 Aligned_cols=139 Identities=16% Similarity=0.279 Sum_probs=109.5
Q ss_pred CCCHHHHHh------hCCChHHHHHHHHHCC--ChHHHhcccCCCCCCeEEEecCcHHHhcCCccccccC--CHHHHHHH
Q 024902 45 HVNLTDLLS------VAGPFHTFLNYLESTK--VLETFQNQANNTDEGITIFVPKDDAFKSLKKPSLANL--TQDQLKQL 114 (260)
Q Consensus 45 ~~nI~~iL~------~~g~fStF~~lL~~tg--L~~~L~~~l~~t~~~~TVFAPTD~AF~~L~~~~l~~L--s~~~L~~L 114 (260)
..||+++|+ ++++||+|+++|+++| |.++|++. ++||||||+|+||+++. +++| ++++++++
T Consensus 5 ~~~i~~~L~~~~~~~~~~~~s~~~~~l~~ag~~l~~~L~~~-----~~~TvFAPtn~Af~~~~---~~~l~~~~~~l~~i 76 (324)
T 1o70_A 5 DTTVTQFLQSFKENAENGALRKFYEVIMDNGGAVLDDINSL-----TEVTILAPSNEAWNSSN---INNVLRDRNKMRQI 76 (324)
T ss_dssp --------------CCHHHHHHHHHHHHHTCSHHHHHHHTC-----SSEEEEEECHHHHHHTC---THHHHTCHHHHHHH
T ss_pred hhhHHHHHHHHHhhhcCCcHHHHHHHHHHHhHHHHHHHcCC-----CCeEEEEEChHhhhccc---HhhhhCCHHHHHHH
Confidence 468999998 6789999999999999 99999985 89999999999998864 3333 78999999
Q ss_pred HhhcccCCccChhhhccccCC--cceecccCCc-eeEEEEec--CCeEEEeeccceeEEeeeeccCCCcEEEEeCccccC
Q 024902 115 CLFHALPHYYSFADFKNLSQM--SPVSTYAGGD-YKLNFTDV--SGAVHIDSGWSRTKVSSSVHSTDPVALYQVDKVLLP 189 (260)
Q Consensus 115 L~yHIlp~~~~~~~l~~~s~~--~~v~Tl~G~~-l~lnvt~~--g~~V~V~~G~~~A~V~~~v~~~~ngvIh~ID~VLlP 189 (260)
|+|||++++++.++|..+... ..++|+.|+. +.++++.+ ++.+.+++|..+++|+..++..+||+||+||+||.|
T Consensus 77 L~yHvv~g~~~~~~l~~~~~~~~~~~~Tl~g~~~l~~~v~~~~~~~~v~v~~g~~~a~v~~~di~~~NGvIhvID~VL~p 156 (324)
T 1o70_A 77 LNMHIIKDRLNVDKIRQKNANLIAQVPTVNNNTFLYFNVRGEGSDTVITVEGGGVNATVIQADVAQTNGYVHIIDHVLGV 156 (324)
T ss_dssp HHHTEESSCCCHHHHHHHTSSSCCCEEBSSTTCEEEEEEESCGGGCEEEEEETTEEEEEEEEEEECSSEEEEEESSCTTS
T ss_pred HHhcEeCCeecHHHHhhccCCCceEEEcCCCCceEEEEEeecCCceEEEEcCCceeEEEEeccccccCcEEEEEchhhhh
Confidence 999999999999999875210 1789999876 67888743 346888888778999988888889999999999998
Q ss_pred CC
Q 024902 190 EA 191 (260)
Q Consensus 190 ~~ 191 (260)
+.
T Consensus 157 p~ 158 (324)
T 1o70_A 157 PY 158 (324)
T ss_dssp CC
T ss_pred ch
Confidence 64
No 5
>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1
Probab=99.91 E-value=8.1e-25 Score=200.96 Aligned_cols=145 Identities=14% Similarity=0.141 Sum_probs=118.4
Q ss_pred CCCHHHHHhhCCChHHHHHHHHHCCChHHHhcccCCCCCCeEEEecCcHHHhcCC----ccccccCC---HHHHHHHHhh
Q 024902 45 HVNLTDLLSVAGPFHTFLNYLESTKVLETFQNQANNTDEGITIFVPKDDAFKSLK----KPSLANLT---QDQLKQLCLF 117 (260)
Q Consensus 45 ~~nI~~iL~~~g~fStF~~lL~~tgL~~~L~~~l~~t~~~~TVFAPTD~AF~~L~----~~~l~~Ls---~~~L~~LL~y 117 (260)
..++.++|+.+++|++|.++++.+|+.++|++. .++||||||+|+||+++. ...++.|. +++++++|+|
T Consensus 158 ~~ti~~~l~~~~~fs~~~~~l~~~gl~~~L~~~----~~~~TvFAPtd~Af~~l~~~~~~~~~~~l~~~~~~~l~~iL~y 233 (324)
T 1o70_A 158 YTTVLGKLESDPMMSDTYKMGKFSHFNDQLNNT----QRRFTYFVPRDKGWQKTELDYPSAHKKLFMADFSYHSKSILER 233 (324)
T ss_dssp CSCHHHHHHHCGGGHHHHHHTTTTTTTGGGGCS----SSEEEEEEECHHHHHHHHHHCHHHHHHHTSGGGHHHHHHHHHT
T ss_pred hhhHHHHhhcCchHHHHHHHHHhhCHHHHhCCC----CCCeEEEEeChHHHHhhhhhchhHHHHHhccCcHHHHHHHHHh
Confidence 358999999999999999999999999888742 479999999999999984 23344443 3599999999
Q ss_pred cccCC--ccChhhhccccC---CcceecccCCceeEEEEecCCeEEEeeccceeEEeeeeccCCCcEEEEeCccccCCCC
Q 024902 118 HALPH--YYSFADFKNLSQ---MSPVSTYAGGDYKLNFTDVSGAVHIDSGWSRTKVSSSVHSTDPVALYQVDKVLLPEAI 192 (260)
Q Consensus 118 HIlp~--~~~~~~l~~~s~---~~~v~Tl~G~~l~lnvt~~g~~V~V~~G~~~A~V~~~v~~~~ngvIh~ID~VLlP~~l 192 (260)
||+++ .|+.++|.+++. ...++|++ +.+.++++..++.+.|+.+..+++|+..++...||+||+||+||+|+..
T Consensus 234 Hvv~~~~~~~~~~l~~~~~~~~~~~~~Tl~-~~l~v~~~~~~~~v~v~~~~~~a~v~~~di~~~NGvIHvID~VL~P~~~ 312 (324)
T 1o70_A 234 HLAISDKEYTMKDLVKFSQESGSVILPTFR-DSLSIRVEEEAGRYVIIWNYKKINVYRPDVECTNGIIHVIDYPLLEEKD 312 (324)
T ss_dssp TEEEESSCCCHHHHHHHHHHSSSEEEECSS-SEEEEEEEEETTEEEEEETTEEEEEEEEEEEETTEEEEEESSCSCCTTT
T ss_pred cEeCCcceEcHHHHhhhccCCCeeeeeccC-CcEEEEEEecCCEEEEEecCceeEEEEcccccCCCeEEEeceeecCCcc
Confidence 99998 888899986420 01489998 7788888766788999866567899877777788999999999999876
Q ss_pred cC
Q 024902 193 FG 194 (260)
Q Consensus 193 f~ 194 (260)
..
T Consensus 313 ~~ 314 (324)
T 1o70_A 313 VV 314 (324)
T ss_dssp TC
T ss_pred cc
Confidence 54
No 6
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=17.25 E-value=21 Score=27.08 Aligned_cols=19 Identities=21% Similarity=0.116 Sum_probs=14.4
Q ss_pred eeccCCCcEEEEeCccccC
Q 024902 171 SVHSTDPVALYQVDKVLLP 189 (260)
Q Consensus 171 ~v~~~~ngvIh~ID~VLlP 189 (260)
..++..+|+||.||.|..=
T Consensus 67 ~~IE~~GgvIHSIDEVvaG 85 (100)
T 3bpd_A 67 GVIEDMGGVIHSVDEVVAG 85 (100)
T ss_dssp HHHHTTTCEEEEEEEEEEE
T ss_pred HHHHHcCCeEEeeeeeeec
Confidence 3456678999999988543
No 7
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=16.75 E-value=20 Score=27.13 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=16.7
Q ss_pred eeccCCCcEEEEeCccccCCCCcC
Q 024902 171 SVHSTDPVALYQVDKVLLPEAIFG 194 (260)
Q Consensus 171 ~v~~~~ngvIh~ID~VLlP~~lf~ 194 (260)
..++..+|+||.||.|.-=..+..
T Consensus 67 ~~IE~~Gg~IHSIDEVvaG~~ivE 90 (97)
T 2raq_A 67 RAIESYGGSIHSVDEVVAGRTMVE 90 (97)
T ss_dssp HHHHHTTCEEEEEEEEEEESSCCC
T ss_pred HHHHHcCCeEEeeeeeeecceecc
Confidence 345567899999998865544443
No 8
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=14.49 E-value=1.5e+02 Score=21.78 Aligned_cols=56 Identities=14% Similarity=0.176 Sum_probs=36.7
Q ss_pred HHHHhhCCChHHHHHHHHHCCChHHHhcccCCCCCCeEEEecCcHHHhcCCccccccCCHHHHHHHHhhc
Q 024902 49 TDLLSVAGPFHTFLNYLESTKVLETFQNQANNTDEGITIFVPKDDAFKSLKKPSLANLTQDQLKQLCLFH 118 (260)
Q Consensus 49 ~~iL~~~g~fStF~~lL~~tgL~~~L~~~l~~t~~~~TVFAPTD~AF~~L~~~~l~~Ls~~~L~~LL~yH 118 (260)
.++.+....-..+.+++++.|+.+.|+. ....|+.+.......++.+++.++|.-|
T Consensus 30 ~di~~~~~~~~~l~~~~~~~g~~~l~n~--------------~~~~~k~l~~~~~~~~~~~~~~~~l~~~ 85 (114)
T 1rw1_A 30 HDYKAVGIDREHLRRWCAEHGWQTVLNR--------------AGTTFRKLDEAQKADLDEAKAIELMLAQ 85 (114)
T ss_dssp EEHHHHCCCHHHHHHHHHHHCHHHHBCT--------------TSHHHHTSCHHHHTTCCHHHHHHHHHHC
T ss_pred EeecCCCCCHHHHHHHHHhCChHHhccC--------------CcHhHHhcCccccccCCHHHHHHHHHhC
Confidence 3445555556677777887786555554 3577888875444467887777777665
No 9
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=12.15 E-value=1.8e+02 Score=21.10 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=20.8
Q ss_pred CHHHHHhhCC--ChHHHHHHHHHCC---ChHHHh
Q 024902 47 NLTDLLSVAG--PFHTFLNYLESTK---VLETFQ 75 (260)
Q Consensus 47 nI~~iL~~~g--~fStF~~lL~~tg---L~~~L~ 75 (260)
.+.++|...| -|..|++.|+.++ |.+.|+
T Consensus 58 ~Lld~L~~rG~~Af~~F~~aL~et~~~~La~lL~ 91 (97)
T 3ygs_P 58 QLIIDLETRGSQALPLFISCLEDTGQDMLASFLR 91 (97)
T ss_dssp HHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHcChHHHHHHHHHHHHcCcHHHHHHHc
Confidence 4777776554 4999999999887 444443
No 10
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=11.07 E-value=1.7e+02 Score=20.61 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=21.0
Q ss_pred CCCCHHHHHhhCC--ChHHHHHHHHHCC
Q 024902 44 EHVNLTDLLSVAG--PFHTFLNYLESTK 69 (260)
Q Consensus 44 ~~~nI~~iL~~~g--~fStF~~lL~~tg 69 (260)
.-..+.++|...| -|..|.+.|+.++
T Consensus 54 kar~Lld~l~~kG~~af~~F~~aL~~~~ 81 (94)
T 2p1h_A 54 RAAMLIKMILKKDNDSYVSFYNALLHEG 81 (94)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHcC
Confidence 3457888887776 6999999999887
Done!