BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024903
         (260 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3T92|A Chain A, Crystal Structure Of The Taz2:cEBPEPSILON-Tad Chimera
           Protein
          Length = 121

 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 149 FATCQGLQLLIRHFATCKKRVNGGCLRCKRMWQLLRLHSSMCEQSDSCRVPLCRQFKLK- 207
             +CQ ++ +++H   CK++ NGGC  CK++  L   H+  C Q + C VP C   K K 
Sbjct: 33  LPSCQKMKRVVQHTKGCKRKTNGGCPICKQLIALAAYHAKHC-QENKCPVPFCLNIKQKL 91

Query: 208 --AQLEKKGD 215
              QLE   D
Sbjct: 92  RQQQLEASID 101


>pdb|2K8F|A Chain A, Structural Basis For The Regulation Of P53 Function By
           P300
          Length = 90

 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 149 FATCQGLQLLIRHFATCKKRVNGGCLRCKRMWQLLRLHSSMCEQSDSCRVPLCRQFKLK 207
             +CQ ++ +++H   CK++ NGGC  CK++  L   H+  C Q + C VP C   K K
Sbjct: 33  LPSCQKMKRVVQHTKGCKRKTNGGCPICKQLIALAAYHAKHC-QENKCPVPFCLNIKQK 90


>pdb|3IO2|A Chain A, Crystal Structure Of The Taz2 Domain Of P300
          Length = 114

 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 149 FATCQGLQLLIRHFATCKKRVNGGCLRCKRMWQLLRLHSSMCEQSDSCRVPLC 201
             +CQ ++ +++H   CK++ NGGC  CK++  L   H+  C Q + C VP C
Sbjct: 33  LPSCQKMKRVVQHTKGCKRKTNGGCPICKQLIALAAYHAKHC-QENKCPVPFC 84


>pdb|1F81|A Chain A, Solution Structure Of The Taz2 Domain Of The
           Transcriptional Adaptor Protein Cbp
          Length = 88

 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 149 FATCQGLQLLIRHFATCKKRVNGGCLRCKRMWQLLRLHSSMCEQSDSCRVPLCRQFKLK 207
             +CQ ++ +++H   CK++ NGGC  CK++  L   H+  C Q + C VP C   K K
Sbjct: 31  LPSCQKMKRVVQHTKGCKRKTNGGCPVCKQLIALCCYHAKHC-QENKCPVPFCLNIKHK 88


>pdb|2KA6|A Chain A, Nmr Structure Of The Cbp-Taz2STAT1-Tad Complex
 pdb|2KJE|A Chain A, Nmr Structure Of Cbp Taz2 And Adenoviral E1a Complex
          Length = 92

 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 149 FATCQGLQLLIRHFATCKKRVNGGCLRCKRMWQLLRLHSSMCEQSDSCRVPLCRQFKLK 207
             +CQ ++ +++H   CK++ NGGC  CK++  L   H+  C Q + C VP C   K K
Sbjct: 30  LPSCQKMKRVVQHTKGCKRKTNGGCPVCKQLIALCCYHAKHC-QENKCPVPFCLNIKHK 87


>pdb|3P57|P Chain P, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2 On
           Dna
          Length = 112

 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 149 FATCQGLQLLIRHFATCKKRVNGGCLRCKRMWQLLRLHSSMCEQSDSCRVPLC 201
             +CQ ++ +++H   CK++ NGGC  CK++  L   H+  C Q + C VP C
Sbjct: 32  LPSCQKMKRVVQHTKGCKRKTNGGCPICKQLIALCCYHAKHC-QENKCPVPFC 83


>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
           Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
           SpopmathxBTB3-Box-Pucsbc1
 pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
           Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
           SpopmathxBTB3-Box-Pucsbc1
 pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
           Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
           SpopmathxBTB3-Box-Pucsbc1
 pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
           Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
           SpopmathxBTB3-Box-Pucsbc1
          Length = 312

 Score = 32.7 bits (73), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 34/72 (47%)

Query: 1   MEKYGIHLLALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDLYLRCMKLA 60
           ++K    LLA +  Y++ +LK  C   L   L+++N  ++L LA L  A  L  + +   
Sbjct: 241 LDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFI 300

Query: 61  ASRFKAVEKTEG 72
                 V +T G
Sbjct: 301 NYHATDVLETSG 312


>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
           The Cul3 N- Terminal Domain
 pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
           The Cul3 N- Terminal Domain
          Length = 145

 Score = 31.6 bits (70), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 1   MEKYGIHLLALSHVYSVPQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDL 52
           ++K    LLA +  Y++ +LK  C   L   L+++N  ++L LA L  A  L
Sbjct: 92  LDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQL 143


>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
           Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
           Spopbtb3-Box
 pdb|3HTM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
           Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
           Spopbtb3-Box
 pdb|3HTM|C Chain C, Structures Of Spop-Substrate Complexes: Insights Into
           Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
           Spopbtb3-Box
 pdb|3HTM|D Chain D, Structures Of Spop-Substrate Complexes: Insights Into
           Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
           Spopbtb3-Box
          Length = 172

 Score = 27.7 bits (60), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 27/58 (46%)

Query: 15  YSVPQLKQRCTKGLGERLTIDNVVDVLQLARLCDAPDLYLRCMKLAASRFKAVEKTEG 72
           Y++ +LK  C   L   L+++N  ++L LA L  A  L  + +         V +T G
Sbjct: 115 YALERLKVXCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATDVLETSG 172


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.136    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,948,492
Number of Sequences: 62578
Number of extensions: 245373
Number of successful extensions: 410
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 401
Number of HSP's gapped (non-prelim): 9
length of query: 260
length of database: 14,973,337
effective HSP length: 97
effective length of query: 163
effective length of database: 8,903,271
effective search space: 1451233173
effective search space used: 1451233173
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)