Query 024904
Match_columns 260
No_of_seqs 127 out of 1164
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 08:21:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024904.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024904hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02879 L-ascorbate peroxidas 100.0 3E-76 6.6E-81 524.1 23.3 248 1-259 2-249 (251)
2 PLN02364 L-ascorbate peroxidas 100.0 6.7E-76 1.5E-80 522.6 23.5 249 1-260 1-250 (250)
3 PLN02608 L-ascorbate peroxidas 100.0 4.1E-74 8.8E-79 518.4 23.4 244 5-259 3-246 (289)
4 cd00691 ascorbate_peroxidase A 100.0 4.3E-70 9.4E-75 486.9 22.1 235 14-259 11-252 (253)
5 PLN03030 cationic peroxidase; 100.0 2.2E-67 4.7E-72 480.8 16.8 229 2-259 31-310 (324)
6 cd00693 secretory_peroxidase H 100.0 2.2E-66 4.8E-71 472.8 18.8 229 2-259 8-285 (298)
7 cd00692 ligninase Ligninase an 100.0 4.8E-62 1E-66 447.1 21.5 238 20-259 21-277 (328)
8 cd00649 catalase_peroxidase_1 100.0 2.5E-58 5.4E-63 429.0 18.5 249 9-258 37-396 (409)
9 cd00314 plant_peroxidase_like 100.0 1.2E-57 2.5E-62 408.0 19.8 236 12-254 3-255 (255)
10 PF00141 peroxidase: Peroxidas 100.0 4.2E-57 9.1E-62 399.0 6.9 198 12-237 1-230 (230)
11 TIGR00198 cat_per_HPI catalase 100.0 5.5E-55 1.2E-59 429.6 19.3 239 15-255 53-398 (716)
12 PRK15061 catalase/hydroperoxid 100.0 3.4E-53 7.4E-58 414.9 18.7 246 9-255 49-404 (726)
13 cd08201 plant_peroxidase_like_ 100.0 1.2E-51 2.6E-56 366.5 14.1 209 28-254 37-264 (264)
14 cd08200 catalase_peroxidase_2 100.0 1.1E-48 2.5E-53 351.3 20.1 237 14-256 14-296 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 8.2E-43 1.8E-47 343.6 20.2 229 25-256 440-709 (716)
16 PRK15061 catalase/hydroperoxid 100.0 5.1E-42 1.1E-46 336.4 20.7 228 26-256 448-721 (726)
17 COG0376 KatG Catalase (peroxid 100.0 1.3E-40 2.8E-45 313.8 16.7 245 14-259 67-419 (730)
18 COG0376 KatG Catalase (peroxid 99.8 1.3E-19 2.7E-24 172.1 13.3 228 26-256 458-725 (730)
19 PTZ00411 transaldolase-like pr 50.3 20 0.00043 33.7 3.8 87 76-165 148-252 (333)
20 PRK12346 transaldolase A; Prov 49.2 19 0.0004 33.7 3.4 87 76-165 137-241 (316)
21 cd00957 Transaldolase_TalAB Tr 48.7 20 0.00043 33.4 3.5 85 76-163 136-238 (313)
22 cd07922 CarBa CarBa is the A s 48.7 9.6 0.00021 28.4 1.2 30 230-259 19-59 (81)
23 PRK05264 transcriptional repre 46.2 14 0.0003 28.2 1.7 32 219-250 34-67 (105)
24 cd00490 Met_repressor_MetJ Met 44.4 16 0.00035 27.7 1.8 32 219-250 33-66 (103)
25 PRK12309 transaldolase/EF-hand 41.6 35 0.00076 32.7 4.1 87 76-165 142-246 (391)
26 PRK05269 transaldolase B; Prov 39.6 20 0.00043 33.4 2.1 87 76-165 138-242 (318)
27 TIGR00874 talAB transaldolase. 37.8 27 0.00059 32.5 2.7 86 76-164 136-239 (317)
28 cd00439 Transaldolase Transald 35.4 19 0.00042 32.3 1.2 74 76-152 127-208 (252)
29 PF08383 Maf_N: Maf N-terminal 33.7 26 0.00057 21.9 1.2 15 147-161 19-34 (35)
30 COG3060 MetJ Transcriptional r 30.9 37 0.00081 25.6 1.9 32 219-250 34-67 (105)
31 PLN00017 photosystem I reactio 27.5 32 0.00069 25.9 1.0 20 233-252 37-56 (90)
32 PF01340 MetJ: Met Apo-repress 26.0 15 0.00033 27.8 -0.9 32 219-250 33-66 (104)
33 TIGR00875 fsa_talC_mipB fructo 25.5 45 0.00097 29.2 1.8 69 76-154 89-159 (213)
34 PRK13859 type IV secretion sys 25.5 46 0.001 22.7 1.4 30 96-125 9-41 (55)
No 1
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=3e-76 Score=524.07 Aligned_cols=248 Identities=79% Similarity=1.334 Sum_probs=241.6
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhhHhhcCCchHHHHHHHhhccCccccCCCCCCCCccccChhhhhccccCchHHHHHH
Q 024904 1 MTKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRL 80 (260)
Q Consensus 1 ~~~~cp~~~~~v~~~v~~~~~~i~~~~~~~~~a~~~lRl~FHDc~~~d~~~~~gG~dgsi~~~~E~~~~~N~gl~~~~~~ 80 (260)
|+|.||.+.+.+.++++.+|++|++++.+++++|.+|||+||||++||..+++|||||||++.+|+++|+|.||+.++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~~E~~~~~N~gL~~~~~~ 81 (251)
T PLN02879 2 VKKSYPEVKEEYKKAVQRCKRKLRGLIAEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHPQELAHDANNGLDIAVRL 81 (251)
T ss_pred CcccCCCccHHHHHHHHHHHHHHHHHHhCCCchhHhHHHHHhhhccccCCCCCCCCCeeecChhhccCCCcCChHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred HHHHHHhCCCCchhHHHHhhhhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCChhhhhhhc
Q 024904 81 LEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALS 160 (260)
Q Consensus 81 i~~~k~~~~~vS~AD~ialaa~~av~~~GGP~~~v~~GR~D~~~~~~~~~lP~~~~~~~~l~~~F~~~~Gls~~elVaL~ 160 (260)
|++||++++.|||||||+|||++||+++|||.|+|++||+|+..+++.++||.|+.++++|++.| +++||+++|||||+
T Consensus 82 i~~iK~~~~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~~~~lP~p~~~~~~l~~~F-~~~Gl~~~dlVALs 160 (251)
T PLN02879 82 LDPIKELFPILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPPEGRLPQATKGVDHLRDVF-GRMGLNDKDIVALS 160 (251)
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHH-HHcCCCHHHHeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cCcccccccCCCCCCCCCCCCCCCccChhhhhhhhhcCCCCcccccccCCCccccccccccccCCChHHHHHHHhhCHHH
Q 024904 161 GGHTLGRCHKERSGFEGPWTRNPLIFDNSYFTYVSLVSLPDMELLTGEKDGLLQLPSDKALLDDPVFRPLVEKYAADEDA 240 (260)
Q Consensus 161 GaHtiG~~h~~~~g~~g~~~~tp~~fDn~Yy~~l~~~~~~~~~l~~g~~~gl~~L~SD~~L~~d~~t~~~v~~ya~~~~~ 240 (260)
||||||++||.++|+.|+|+.||.+|||+||+ +|+.++.+|+++|+||++|+.|++|+++|++||+||++
T Consensus 161 GaHTiG~ah~~r~g~~g~~d~tp~~FDN~Yy~----------~ll~~~~~gll~L~SD~aL~~D~~t~~~V~~~A~d~~~ 230 (251)
T PLN02879 161 GGHTLGRCHKERSGFEGAWTPNPLIFDNSYFK----------EILSGEKEGLLQLPTDKALLDDPLFLPFVEKYAADEDA 230 (251)
T ss_pred ccccccccccccccCCCCCCCCccceeHHHHH----------HHHcCCcCCCccchhhHHHhcCCcHHHHHHHHhhCHHH
Confidence 99999999999999999999999999999999 88876668999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCC
Q 024904 241 FFADYAEAHLKLSELGFAE 259 (260)
Q Consensus 241 F~~~F~~Am~Km~~lgv~~ 259 (260)
|+++|+.||.||+++|+.|
T Consensus 231 F~~~Fa~Am~KL~~lg~~~ 249 (251)
T PLN02879 231 FFEDYTEAHLKLSELGFAD 249 (251)
T ss_pred HHHHHHHHHHHHHccCCCC
Confidence 9999999999999999987
No 2
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=6.7e-76 Score=522.62 Aligned_cols=249 Identities=83% Similarity=1.365 Sum_probs=241.1
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhhHhhcCCchHHHHHHHhhccCccccCCCCCCCCccccChhhhhccccCchHHHHHH
Q 024904 1 MTKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRL 80 (260)
Q Consensus 1 ~~~~cp~~~~~v~~~v~~~~~~i~~~~~~~~~a~~~lRl~FHDc~~~d~~~~~gG~dgsi~~~~E~~~~~N~gl~~~~~~ 80 (260)
|+|.||.+.+.+.++++++|++|++++.+++++|.+|||+||||++||.....|||||||.+++|+++++|.+|.+++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~~~E~~~~~N~gl~~~~~~ 80 (250)
T PLN02364 1 MTKNYPTVSEDYKKAVEKCRRKLRGLIAEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFDAEQAHGANSGIHIALRL 80 (250)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHccccCcCcCCCCCCCCccccccccccCCCccCHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred HHHHHHhCCCCchhHHHHhhhhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHh-cCCChhhhhhh
Q 024904 81 LEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQ-MGLSDKDIVAL 159 (260)
Q Consensus 81 i~~~k~~~~~vS~AD~ialaa~~av~~~GGP~~~v~~GR~D~~~~~~~~~lP~~~~~~~~l~~~F~~~-~Gls~~elVaL 159 (260)
|+.+|++++.|||||||+||||+||+++|||.|+|++||+|+.++.+.++||.|..++++|++.| ++ +||+++|||+|
T Consensus 81 i~~ik~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F-~~~~Gl~~~d~VaL 159 (250)
T PLN02364 81 LDPIREQFPTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPPEGRLPDATKGCDHLRDVF-AKQMGLSDKDIVAL 159 (250)
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccccCCCCCCCcCHHHHHHHH-HHhcCCCHHHheee
Confidence 99999999999999999999999999999999999999999999998889999999999999999 75 69999999999
Q ss_pred ccCcccccccCCCCCCCCCCCCCCCccChhhhhhhhhcCCCCcccccccCCCccccccccccccCCChHHHHHHHhhCHH
Q 024904 160 SGGHTLGRCHKERSGFEGPWTRNPLIFDNSYFTYVSLVSLPDMELLTGEKDGLLQLPSDKALLDDPVFRPLVEKYAADED 239 (260)
Q Consensus 160 ~GaHtiG~~h~~~~g~~g~~~~tp~~fDn~Yy~~l~~~~~~~~~l~~g~~~gl~~L~SD~~L~~d~~t~~~v~~ya~~~~ 239 (260)
+||||||.+||.++++.|+|+.||.+|||+||+ +|+.++.+|+++|+||+.|+.|++|+++|++||.|++
T Consensus 160 sGaHTiG~~hc~r~~~~g~~~~tp~~fDn~Yy~----------~ll~~~~~gll~l~sD~~L~~d~~T~~~v~~~a~~~~ 229 (250)
T PLN02364 160 SGAHTLGRCHKDRSGFEGAWTSNPLIFDNSYFK----------ELLSGEKEGLLQLVSDKALLDDPVFRPLVEKYAADED 229 (250)
T ss_pred ecceeeccccCCCCCCCCCCCCCCCccchHHHH----------HHhcCCcCCCccccchHHHccCchHHHHHHHHhhCHH
Confidence 999999999999889989999999999999999 8887666899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCC
Q 024904 240 AFFADYAEAHLKLSELGFAEA 260 (260)
Q Consensus 240 ~F~~~F~~Am~Km~~lgv~~~ 260 (260)
.|+++|+.||+||+++|+.++
T Consensus 230 ~F~~~Fa~Am~Km~~lg~~~~ 250 (250)
T PLN02364 230 AFFADYAEAHMKLSELGFADA 250 (250)
T ss_pred HHHHHHHHHHHHHHccCCCCC
Confidence 999999999999999999986
No 3
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=4.1e-74 Score=518.37 Aligned_cols=244 Identities=69% Similarity=1.160 Sum_probs=235.4
Q ss_pred CCChHHHHHHHHHHHHHHHhhHhhcCCchHHHHHHHhhccCccccCCCCCCCCccccChhhhhccccCchHHHHHHHHHH
Q 024904 5 YPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPF 84 (260)
Q Consensus 5 cp~~~~~v~~~v~~~~~~i~~~~~~~~~a~~~lRl~FHDc~~~d~~~~~gG~dgsi~~~~E~~~~~N~gl~~~~~~i~~~ 84 (260)
.|.++..|-..|+.+|++|+++++|+.++|.+|||+||||++||.+++.|||||||++.+|+++++|.||++++++|+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~~E~~~~~N~gL~~g~~vid~i 82 (289)
T PLN02608 3 APVVDAEYLKEIEKARRDLRALIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNEEEYSHGANNGLKIAIDLCEPV 82 (289)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecccccCCccccchHHHHHHHHHH
Confidence 58889999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred HHhCCCCchhHHHHhhhhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCChhhhhhhccCcc
Q 024904 85 KEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHT 164 (260)
Q Consensus 85 k~~~~~vS~AD~ialaa~~av~~~GGP~~~v~~GR~D~~~~~~~~~lP~~~~~~~~l~~~F~~~~Gls~~elVaL~GaHt 164 (260)
|++++.|||||||++||++||+++|||.|+|++||+|+.++++.++||.|..+++++++.| +++||+++|||+|+||||
T Consensus 83 K~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~LP~p~~~~~~l~~~F-~~~Gl~~~D~VaLsGAHT 161 (289)
T PLN02608 83 KAKHPKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPEEGRLPDAKKGAKHLRDVF-YRMGLSDKDIVALSGGHT 161 (289)
T ss_pred HHHcCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCccCCCcCCCCCHHHHHHHH-HHcCCCHHHHhhhccccc
Confidence 9999999999999999999999999999999999999999988889999999999999999 999999999999999999
Q ss_pred cccccCCCCCCCCCCCCCCCccChhhhhhhhhcCCCCcccccccCCCccccccccccccCCChHHHHHHHhhCHHHHHHH
Q 024904 165 LGRCHKERSGFEGPWTRNPLIFDNSYFTYVSLVSLPDMELLTGEKDGLLQLPSDKALLDDPVFRPLVEKYAADEDAFFAD 244 (260)
Q Consensus 165 iG~~h~~~~g~~g~~~~tp~~fDn~Yy~~l~~~~~~~~~l~~g~~~gl~~L~SD~~L~~d~~t~~~v~~ya~~~~~F~~~ 244 (260)
||.+||.+.||.|+|+.||.+|||+||+ +|+.+..+|+++|+||++|+.|++|+++|+.||.||++|+++
T Consensus 162 iG~ahc~r~g~~g~~~~Tp~~FDN~Yy~----------~ll~~~~~gll~L~SD~~L~~d~~T~~~V~~fA~~~~~F~~~ 231 (289)
T PLN02608 162 LGRAHPERSGFDGPWTKEPLKFDNSYFV----------ELLKGESEGLLKLPTDKALLEDPEFRPYVELYAKDEDAFFRD 231 (289)
T ss_pred cccccccCCCCCCCCCCCCCccChHHHH----------HHHcCCcCCccccccCHhhhcChhHHHHHHHHhhCHHHHHHH
Confidence 9999999888889999999999999999 888764479988999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCC
Q 024904 245 YAEAHLKLSELGFAE 259 (260)
Q Consensus 245 F~~Am~Km~~lgv~~ 259 (260)
|+.||.||+++||.+
T Consensus 232 Fa~Am~Km~~lgvlt 246 (289)
T PLN02608 232 YAESHKKLSELGFTP 246 (289)
T ss_pred HHHHHHHHHcCCCCC
Confidence 999999999999875
No 4
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=4.3e-70 Score=486.89 Aligned_cols=235 Identities=64% Similarity=1.119 Sum_probs=216.3
Q ss_pred HHHHHHHHHHhhHhhcCCchHHHHHHHhhccCccccCCCCCCCCccccChhhhhccccCchHHHHHHHHHHHHhCCCCch
Q 024904 14 KAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFPTISY 93 (260)
Q Consensus 14 ~~v~~~~~~i~~~~~~~~~a~~~lRl~FHDc~~~d~~~~~gG~dgsi~~~~E~~~~~N~gl~~~~~~i~~~k~~~~~vS~ 93 (260)
..+..+|++|++++.++.++|++|||+||||++||++.+.|||||++.+.+|+++++|.+|.+++++|++||+++++|||
T Consensus 11 ~~~~~V~~~v~~~~~~~~~~~~llRl~FHDc~~~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~iK~~~~~VSc 90 (253)
T cd00691 11 KDLEAARNDIAKLIDDKNCAPILVRLAWHDSGTYDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPIKKKYPDISY 90 (253)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccCCCCCCccccchhhcCCccccchHHHHHHHHHHHHHcCCCCH
Confidence 34444455555555599999999999999999999999999999999988999999999998899999999999999999
Q ss_pred hHHHHhhhhhhhhhcCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCHHHHHHHHHHhcCCChhhhhhhccCcccccccC
Q 024904 94 ADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP---QEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHK 170 (260)
Q Consensus 94 AD~ialaa~~av~~~GGP~~~v~~GR~D~~~~~---~~~~lP~~~~~~~~l~~~F~~~~Gls~~elVaL~GaHtiG~~h~ 170 (260)
||||++||++||+.+|||.|+|++||+|+.++. +.++||.|..++++|++.| +++||+++|||+|+||||||.+||
T Consensus 91 ADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F-~~~Gls~~d~VaLsGaHTiG~a~c 169 (253)
T cd00691 91 ADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVF-YRMGFNDQEIVALSGAHTLGRCHK 169 (253)
T ss_pred HHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHH-HhcCCCHHHHHHhcccceeecccc
Confidence 999999999999999999999999999999986 6778999999999999999 999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCccChhhhhhhhhcCCCCcccccccC----CCccccccccccccCCChHHHHHHHhhCHHHHHHHHH
Q 024904 171 ERSGFEGPWTRNPLIFDNSYFTYVSLVSLPDMELLTGEK----DGLLQLPSDKALLDDPVFRPLVEKYAADEDAFFADYA 246 (260)
Q Consensus 171 ~~~g~~g~~~~tp~~fDn~Yy~~l~~~~~~~~~l~~g~~----~gl~~L~SD~~L~~d~~t~~~v~~ya~~~~~F~~~F~ 246 (260)
.++++.|+|+.||.+|||+||+ +|+.+.. ++++.|+||+.|+.|++|+++|++||+|+++|+++|+
T Consensus 170 ~~~~~~g~~~~tp~~FDn~Yy~----------~ll~~~g~~~~~~~~~L~sD~~L~~d~~t~~~v~~~a~~~~~F~~~Fa 239 (253)
T cd00691 170 ERSGYDGPWTKNPLKFDNSYFK----------ELLEEDWKLPTPGLLMLPTDKALLEDPKFRPYVELYAKDQDAFFKDYA 239 (253)
T ss_pred cCCCCCCCCCCCCCcccHHHHH----------HHhcCCCccCcCcceechhhHHHHcCccHHHHHHHHhhCHHHHHHHHH
Confidence 8888888899999999999999 7776522 4566688999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCC
Q 024904 247 EAHLKLSELGFAE 259 (260)
Q Consensus 247 ~Am~Km~~lgv~~ 259 (260)
+||+||+++||++
T Consensus 240 ~Am~Km~~l~v~~ 252 (253)
T cd00691 240 EAHKKLSELGVPF 252 (253)
T ss_pred HHHHHHHhcCCCC
Confidence 9999999999986
No 5
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=2.2e-67 Score=480.82 Aligned_cols=229 Identities=28% Similarity=0.429 Sum_probs=207.4
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhhHhhcCCchHHHHHHHhhccCccccCCCCCCCCccccCh---hhhhccccCchHHHH
Q 024904 2 TKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLA---AEQAHSANNGLDIAV 78 (260)
Q Consensus 2 ~~~cp~~~~~v~~~v~~~~~~i~~~~~~~~~a~~~lRl~FHDc~~~d~~~~~gG~dgsi~~~---~E~~~~~N~gl~~~~ 78 (260)
.+|||++|.||+++|+++ +.+|+.++|++|||+|||||+ +||||||+++ .|+++++|.+| ++|
T Consensus 31 ~~sCP~aE~iV~~~v~~~------~~~d~~~aa~llRL~FHDCfv-------~GCDaSvLl~~~~~Ek~a~~N~~l-~Gf 96 (324)
T PLN03030 31 STTCPQAESIVRKTVQSH------FQSNPAIAPGLLRMHFHDCFV-------RGCDASILIDGSNTEKTALPNLLL-RGY 96 (324)
T ss_pred hCcCCCHHHHHHHHHHHH------HhhCcccchhhhhhhhhhhee-------cCCceEEeeCCCcccccCCCCcCc-chH
Confidence 579999999999999999 999999999999999999998 9999999984 69999999999 589
Q ss_pred HHHHHHHHh----CC-CCchhHHHHhhhhhhhhhcCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCHHHHHHHHHHhcCC
Q 024904 79 RLLEPFKEQ----FP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP--QEGRLPDAKQGNDHLRQVFGAQMGL 151 (260)
Q Consensus 79 ~~i~~~k~~----~~-~vS~AD~ialaa~~av~~~GGP~~~v~~GR~D~~~~~--~~~~lP~~~~~~~~l~~~F~~~~Gl 151 (260)
++|+.+|++ || +|||||||++|||+||.++|||.|+|++||+|+.++. ...+||.|+.++++|++.| +++||
T Consensus 97 ~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~~LP~p~~~~~~l~~~F-~~~Gl 175 (324)
T PLN03030 97 DVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDASNLPGFTDSIDVQKQKF-AAKGL 175 (324)
T ss_pred HHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCcccccCCcCCCCCHHHHHHHH-HHcCC
Confidence 999999975 88 7999999999999999999999999999999998873 3458999999999999999 99999
Q ss_pred ChhhhhhhccCcccccccCCC-----CCCCC---------------------C-----------CCCCCCccChhhhhhh
Q 024904 152 SDKDIVALSGGHTLGRCHKER-----SGFEG---------------------P-----------WTRNPLIFDNSYFTYV 194 (260)
Q Consensus 152 s~~elVaL~GaHtiG~~h~~~-----~g~~g---------------------~-----------~~~tp~~fDn~Yy~~l 194 (260)
+.+|||+|+||||||++||.. ++|.+ | +..||.+|||+||+
T Consensus 176 ~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~-- 253 (324)
T PLN03030 176 NTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRIALDTGSSNRFDASFFS-- 253 (324)
T ss_pred CHHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCccccCCCCCCcccccHHHH--
Confidence 999999999999999999952 11110 0 23689999999999
Q ss_pred hhcCCCCcccccccCCCccccccccccccCCChHHHHHHHhhCH----HHHHHHHHHHHHHHHhCCCCC
Q 024904 195 SLVSLPDMELLTGEKDGLLQLPSDKALLDDPVFRPLVEKYAADE----DAFFADYAEAHLKLSELGFAE 259 (260)
Q Consensus 195 ~~~~~~~~~l~~g~~~gl~~L~SD~~L~~d~~t~~~v~~ya~~~----~~F~~~F~~Am~Km~~lgv~~ 259 (260)
+|+.+ +|+| +||++|+.|++|+++|++||.|+ +.|+++|++||.||+++||.+
T Consensus 254 --------nll~~--rGlL--~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlT 310 (324)
T PLN03030 254 --------NLKNG--RGIL--ESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKT 310 (324)
T ss_pred --------HHHhc--CCCc--CCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCC
Confidence 99987 7886 59999999999999999999875 599999999999999999864
No 6
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=2.2e-66 Score=472.77 Aligned_cols=229 Identities=36% Similarity=0.580 Sum_probs=208.4
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhhHhhcCCchHHHHHHHhhccCccccCCCCCCCCccccCh------hhhhccccCchH
Q 024904 2 TKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLA------AEQAHSANNGLD 75 (260)
Q Consensus 2 ~~~cp~~~~~v~~~v~~~~~~i~~~~~~~~~a~~~lRl~FHDc~~~d~~~~~gG~dgsi~~~------~E~~~~~N~gl~ 75 (260)
.+|||+||+||+++|++. +..+++++|++|||+||||++ +||||||+++ +|+++++|.+|
T Consensus 8 ~~sCP~~e~iV~~~v~~~------~~~~~~~a~~~lRl~FHDc~v-------~GcDaSill~~~~~~~~E~~~~~N~~l- 73 (298)
T cd00693 8 SKSCPNAESIVRSVVRAA------VKADPRLAAALLRLHFHDCFV-------RGCDASVLLDSTANNTSEKDAPPNLSL- 73 (298)
T ss_pred cCCCCChHHHHHHHHHHH------HHhCCCcCchhhhhhhHhhhc-------cCcceeEEecCCCCCchhccCCCCCCc-
Confidence 579999999999999999 999999999999999999997 8999999873 69999999999
Q ss_pred HHHHHHHHHHHh----CC-CCchhHHHHhhhhhhhhhcCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCHHHHHHHHHHh
Q 024904 76 IAVRLLEPFKEQ----FP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQ--EGRLPDAKQGNDHLRQVFGAQ 148 (260)
Q Consensus 76 ~~~~~i~~~k~~----~~-~vS~AD~ialaa~~av~~~GGP~~~v~~GR~D~~~~~~--~~~lP~~~~~~~~l~~~F~~~ 148 (260)
++|++|+.+|++ || .|||||||++||++||+.+|||.|+|++||+|+..+.+ .++||.|..++++|++.| ++
T Consensus 74 ~g~~~i~~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F-~~ 152 (298)
T cd00693 74 RGFDVIDDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDVGNLPSPFFSVSQLISLF-AS 152 (298)
T ss_pred chhHHHHHHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccccCCCCcccCHHHHHHHH-HH
Confidence 589999999975 77 89999999999999999999999999999999987643 368999999999999999 99
Q ss_pred cCCChhhhhhhccCcccccccCC----C-CCCCC--------------------CC----------C-CCCCccChhhhh
Q 024904 149 MGLSDKDIVALSGGHTLGRCHKE----R-SGFEG--------------------PW----------T-RNPLIFDNSYFT 192 (260)
Q Consensus 149 ~Gls~~elVaL~GaHtiG~~h~~----~-~g~~g--------------------~~----------~-~tp~~fDn~Yy~ 192 (260)
+||+++|||+|+||||||++||. | ++|.| |+ + .||.+|||+||+
T Consensus 153 ~G~~~~d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~ 232 (298)
T cd00693 153 KGLTVTDLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVPLDPGTPNTFDNSYYK 232 (298)
T ss_pred cCCCHHHheeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCCCCCccccCCCCCCCccccHHHH
Confidence 99999999999999999999995 2 23321 22 2 789999999999
Q ss_pred hhhhcCCCCcccccccCCCccccccccccccCCChHHHHHHHhhCHHHHHHHHHHHHHHHHhCCCCC
Q 024904 193 YVSLVSLPDMELLTGEKDGLLQLPSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHLKLSELGFAE 259 (260)
Q Consensus 193 ~l~~~~~~~~~l~~g~~~gl~~L~SD~~L~~d~~t~~~v~~ya~~~~~F~~~F~~Am~Km~~lgv~~ 259 (260)
+|+.+ +|+ |+||++|+.|++|+++|++||.||+.|+++|+.||.||+++||.+
T Consensus 233 ----------~l~~~--~gl--L~SD~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~t 285 (298)
T cd00693 233 ----------NLLAG--RGL--LTSDQALLSDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLT 285 (298)
T ss_pred ----------HHHhc--ccC--ccCCHHhccCccHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCcc
Confidence 88876 677 469999999999999999999999999999999999999999864
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=4.8e-62 Score=447.07 Aligned_cols=238 Identities=30% Similarity=0.456 Sum_probs=205.1
Q ss_pred HHHHhhH-hhcCC---chHHHHHHHhhccCccc-----cCCCCCCCCccccCh--hhhhccccCchHHHHHHHHHHHHhC
Q 024904 20 KRKLRGF-IAEKN---CAPLMLRIAWHSAGTYD-----VKTKTGGPFGTMRLA--AEQAHSANNGLDIAVRLLEPFKEQF 88 (260)
Q Consensus 20 ~~~i~~~-~~~~~---~a~~~lRl~FHDc~~~d-----~~~~~gG~dgsi~~~--~E~~~~~N~gl~~~~~~i~~~k~~~ 88 (260)
+.+|++. ..+.. .|+.+|||+||||++|| ...+.|||||||++. .|+++++|.||+++++.|+++++++
T Consensus 21 ~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~~E~~~~~N~gL~~vvd~lk~~~e~~ 100 (328)
T cd00692 21 LDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDDIETAFHANIGLDEIVEALRPFHQKH 100 (328)
T ss_pred HHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCcccccCCCCCCHHHHHHHHHHHHHhc
Confidence 4445544 44544 56679999999999999 456789999999874 5999999999998888888887776
Q ss_pred CCCchhHHHHhhhhhhhh-hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCChhhhhhhccCccccc
Q 024904 89 PTISYADLYQLAGVVGVE-VTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGR 167 (260)
Q Consensus 89 ~~vS~AD~ialaa~~av~-~~GGP~~~v~~GR~D~~~~~~~~~lP~~~~~~~~l~~~F~~~~Gls~~elVaL~GaHtiG~ 167 (260)
+ |||||||+|||++||+ ++|||.|+|++||+|+.++.+.++||.|+.++++|++.| +++||+.+|||+|+||||||+
T Consensus 101 c-VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~~g~LP~p~~sv~~l~~~F-~~~Gf~~~E~VaLsGAHTiG~ 178 (328)
T cd00692 101 N-VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAPDGLVPEPFDSVDKILARF-ADAGFSPDELVALLAAHSVAA 178 (328)
T ss_pred C-cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCcccCCCCCCCCHHHHHHHH-HHcCCCHHHHhhhcccccccc
Confidence 5 9999999999999999 569999999999999999999999999999999999999 999999999999999999999
Q ss_pred ccCCCCCCCC-CCCCCCCccChhhhhhhhhc--CCCCcccccc----cCCCccccccccccccCCChHHHHHHHhhCHHH
Q 024904 168 CHKERSGFEG-PWTRNPLIFDNSYFTYVSLV--SLPDMELLTG----EKDGLLQLPSDKALLDDPVFRPLVEKYAADEDA 240 (260)
Q Consensus 168 ~h~~~~g~~g-~~~~tp~~fDn~Yy~~l~~~--~~~~~~l~~g----~~~gl~~L~SD~~L~~d~~t~~~v~~ya~~~~~ 240 (260)
+|.....+.| +|+.||.+|||+||+++++. .+|+.....| ..+|+++|+||++|+.|++|+++|++||+||++
T Consensus 179 a~~~Dps~~g~p~D~TP~~FDn~Yf~~ll~~~~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~D~~T~~~v~~fa~dq~~ 258 (328)
T cd00692 179 QDFVDPSIAGTPFDSTPGVFDTQFFIETLLKGTAFPGSGGNQGEVESPLPGEFRLQSDFLLARDPRTACEWQSFVNNQAK 258 (328)
T ss_pred cCCCCCCCCCCCCCCCcchhcHHHHHHHHHcCCCCCCccccccccccCccccccccchHHHhcCCcHHHHHHHHhcCHHH
Confidence 9976555555 89999999999999987642 3343221111 135788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCC
Q 024904 241 FFADYAEAHLKLSELGFAE 259 (260)
Q Consensus 241 F~~~F~~Am~Km~~lgv~~ 259 (260)
|+++|+.||.||+++||++
T Consensus 259 f~~~Fa~Am~KLs~lgv~~ 277 (328)
T cd00692 259 MNAAFAAAMLKLSLLGQDN 277 (328)
T ss_pred HHHHHHHHHHHHHcCCCCc
Confidence 9999999999999999986
No 8
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=2.5e-58 Score=429.05 Aligned_cols=249 Identities=36% Similarity=0.607 Sum_probs=215.4
Q ss_pred HHHHHHHHHHHHHHHhhHhhcC---------CchHHHHHHHhhccCccccCCCCCCCC-ccccChhhhhccccCchHHHH
Q 024904 9 SEDYKKAVEKCKRKLRGFIAEK---------NCAPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAV 78 (260)
Q Consensus 9 ~~~v~~~v~~~~~~i~~~~~~~---------~~a~~~lRl~FHDc~~~d~~~~~gG~d-gsi~~~~E~~~~~N~gl~~~~ 78 (260)
+..=.-.++++|++|+++++++ +++|.+|||+||+++|||.++++||++ |+|++.+|++++.|.+|+.++
T Consensus 37 ~~~~~~d~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~pe~~~~~N~gL~~a~ 116 (409)
T cd00649 37 EEFKKLDLEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFAPLNSWPDNVNLDKAR 116 (409)
T ss_pred HHhhhccHHHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccccccCcHhhhhHHHHH
Confidence 3333345677899999999875 799999999999999999999999998 799999999999999999999
Q ss_pred HHHHHHHHhCC-CCchhHHHHhhhhhhhhhcCCCCCCCCCCCCCCCCCC-------------------------------
Q 024904 79 RLLEPFKEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP------------------------------- 126 (260)
Q Consensus 79 ~~i~~~k~~~~-~vS~AD~ialaa~~av~~~GGP~~~v~~GR~D~~~~~------------------------------- 126 (260)
.+|++||++++ .||+||+|+||+++||+.+|||.|+|..||.|...+.
T Consensus 117 ~~L~pik~k~~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~~l~~pl~a~~ 196 (409)
T cd00649 117 RLLWPIKQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDRDLENPLAAVQ 196 (409)
T ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcccccccccchhhccchhhhh
Confidence 99999999998 6999999999999999999999999999999997542
Q ss_pred -------CCC--CCCCCCCCHHHHHHHHHHhcCCChhhhhhh-ccCcccccccCC-------------------------
Q 024904 127 -------QEG--RLPDAKQGNDHLRQVFGAQMGLSDKDIVAL-SGGHTLGRCHKE------------------------- 171 (260)
Q Consensus 127 -------~~~--~lP~~~~~~~~l~~~F~~~~Gls~~elVaL-~GaHtiG~~h~~------------------------- 171 (260)
+++ .||.|..++.+|++.| .+|||+.+||||| +||||||++||.
T Consensus 197 mgliyv~Pegp~gLPdP~~sa~~LR~~F-~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rlg~dP~~~~~~~~gLgw~~~ 275 (409)
T cd00649 197 MGLIYVNPEGPDGNPDPLAAAKDIRETF-ARMAMNDEETVALIAGGHTFGKTHGAGPASHVGPEPEAAPIEQQGLGWKNS 275 (409)
T ss_pred ccccccCCCCCCCCCCCccCHHHHHHHH-HHcCCCHHHHeeeccCCcceeecCcccccccCCCCCCcCHHHHHhhccccc
Confidence 233 6999999999999999 9999999999999 599999999994
Q ss_pred ----------CCCCCCCCCCCCCccChhhhhhhhhc-----CCCCc------------ccc-----cccCCCcccccccc
Q 024904 172 ----------RSGFEGPWTRNPLIFDNSYFTYVSLV-----SLPDM------------ELL-----TGEKDGLLQLPSDK 219 (260)
Q Consensus 172 ----------~~g~~g~~~~tp~~fDn~Yy~~l~~~-----~~~~~------------~l~-----~g~~~gl~~L~SD~ 219 (260)
.+|++|+|+.||.+|||+||++|+.. ..|.- +.. .+..+++++|+||+
T Consensus 276 Cp~g~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~~~~~~~~d~~~~~~~~~~gmL~SD~ 355 (409)
T cd00649 276 YGTGKGKDTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNAAGENTVPDAHDPSKKHAPMMLTTDL 355 (409)
T ss_pred CCCCCCCCCccccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCccccccCCCccccccccCcccchhhH
Confidence 13677899999999999999988752 11110 000 01123677789999
Q ss_pred ccccCCChHHHHHHHhhCHHHHHHHHHHHHHHHH--hCCCC
Q 024904 220 ALLDDPVFRPLVEKYAADEDAFFADYAEAHLKLS--ELGFA 258 (260)
Q Consensus 220 ~L~~d~~t~~~v~~ya~~~~~F~~~F~~Am~Km~--~lgv~ 258 (260)
+|+.|++++++|++||.|+++|+++|++||.||+ .+|+.
T Consensus 356 aL~~Dp~tr~iV~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~ 396 (409)
T cd00649 356 ALRFDPEYEKISRRFLENPDEFADAFAKAWFKLTHRDMGPK 396 (409)
T ss_pred hhhcCccHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCch
Confidence 9999999999999999999999999999999995 56653
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=1.2e-57 Score=407.99 Aligned_cols=236 Identities=43% Similarity=0.675 Sum_probs=205.3
Q ss_pred HHHHHHHHHHHHhhHhhcCCchHHHHHHHhhccCccccCC-CCCCCCccccChhhhhccccCchHHHHHHHHHHHHhCC-
Q 024904 12 YKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKT-KTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFP- 89 (260)
Q Consensus 12 v~~~v~~~~~~i~~~~~~~~~a~~~lRl~FHDc~~~d~~~-~~gG~dgsi~~~~E~~~~~N~gl~~~~~~i~~~k~~~~- 89 (260)
|++.|++. +.+++.+++.+|||+||||++|+..+ ..|||||||++.+|+++|+|.+|.+++++|+++|.+++
T Consensus 3 v~~~l~~~------~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~~e~~~~~N~~l~~~~~~l~~ik~~~~~ 76 (255)
T cd00314 3 IKAILEDL------ITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFEPELDRPENGGLDKALRALEPIKSAYDG 76 (255)
T ss_pred HHHHHHHH------HHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEeccccccCcccccHHHHHHHHHHHHHHcCC
Confidence 55555555 56688999999999999999999887 77999999999999999999999889999999999985
Q ss_pred --CCchhHHHHhhhhhhhhhc--CCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCHHHHHHHHHHhcCCChhhhhhhc
Q 024904 90 --TISYADLYQLAGVVGVEVT--GGPDIPFHPGRDDKA-----EPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALS 160 (260)
Q Consensus 90 --~vS~AD~ialaa~~av~~~--GGP~~~v~~GR~D~~-----~~~~~~~lP~~~~~~~~l~~~F~~~~Gls~~elVaL~ 160 (260)
.|||||||++|+++||+.+ |||.|+|++||+|+. .+.|.+++|.+..++.++++.| +++||+++|||||+
T Consensus 77 ~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F-~~~Gl~~~e~VAL~ 155 (255)
T cd00314 77 GNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKF-KRMGLSPSELVALS 155 (255)
T ss_pred CCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHH-HHcCCCHHHHHhhc
Confidence 7999999999999999999 999999999999999 4567788999999999999999 89999999999999
Q ss_pred -cCccc-ccccCCCCCCC--CCCCCCCCccChhhhhhhhhcCCCCccc--ccccCCCccccccccccccCCChHHHHHHH
Q 024904 161 -GGHTL-GRCHKERSGFE--GPWTRNPLIFDNSYFTYVSLVSLPDMEL--LTGEKDGLLQLPSDKALLDDPVFRPLVEKY 234 (260)
Q Consensus 161 -GaHti-G~~h~~~~g~~--g~~~~tp~~fDn~Yy~~l~~~~~~~~~l--~~g~~~gl~~L~SD~~L~~d~~t~~~v~~y 234 (260)
||||| |++||...+.. ++|+.||.+|||+||++|+.....++.. .....+++.+|+||+.|+.|++|+.+|++|
T Consensus 156 ~GaHti~G~~~~~~~~~~~~~~~~~tp~~fDN~yy~~l~~~~~~~~~~~~~~~~~~~~~~l~sD~~L~~d~~t~~~v~~y 235 (255)
T cd00314 156 AGAHTLGGKNHGDLLNYEGSGLWTSTPFTFDNAYFKNLLDMNWEWRVGSPDPDGVKGPGLLPSDYALLSDSETRALVERY 235 (255)
T ss_pred cCCeeccCcccCCCCCcccCCCCCCCCCccchHHHHHHhcCCcccccCCccCCCcccCCCchhhHHHhcCHhHHHHHHHH
Confidence 99999 99999765544 6789999999999999655432211100 000124556678999999999999999999
Q ss_pred hhCHHHHHHHHHHHHHHHHh
Q 024904 235 AADEDAFFADYAEAHLKLSE 254 (260)
Q Consensus 235 a~~~~~F~~~F~~Am~Km~~ 254 (260)
|.|+++|+++|++||.||++
T Consensus 236 a~~~~~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 236 ASDQEKFFEDFAKAWIKMVN 255 (255)
T ss_pred HhCHHHHHHHHHHHHHHHcC
Confidence 99999999999999999974
No 10
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=4.2e-57 Score=398.97 Aligned_cols=198 Identities=42% Similarity=0.727 Sum_probs=170.0
Q ss_pred HHHHHHHHHHHHhhHhhcCCchHHHHHHHhhccCccccCCCCCCCCccccC-hhhhhccccCchHHHHHHHHHHHHh---
Q 024904 12 YKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRL-AAEQAHSANNGLDIAVRLLEPFKEQ--- 87 (260)
Q Consensus 12 v~~~v~~~~~~i~~~~~~~~~a~~~lRl~FHDc~~~d~~~~~gG~dgsi~~-~~E~~~~~N~gl~~~~~~i~~~k~~--- 87 (260)
|+++|+++ +..+++++|++|||+||||++| |||||||++ .+|+++++|.||.+++++|+.||++
T Consensus 1 Vr~~v~~~------~~~~~~~~~~~lRl~FHDc~~~------~GcDgSil~~~~e~~~~~N~gl~~~~~~i~~ik~~~~~ 68 (230)
T PF00141_consen 1 VRSDVRAA------FKKDPTLAPGLLRLAFHDCFVY------GGCDGSILLFSAEKDAPPNRGLRDGFDVIDPIKAKLEA 68 (230)
T ss_dssp HHHHHHHH------HHHHTTSHHHHHHHHHHHHTTH------TSSSSGGGGSTTGGGSGGGTTHHHHHHHHHHHHHHHCH
T ss_pred CHHHHHHH------HHHCcCccHHHHHHHccccccc------cccccceeccccccccccccCcceeeechhhHHhhhcc
Confidence 56666666 7778999999999999999987 999999976 7899999999999899999999976
Q ss_pred -CC-CCchhHHHHhhhhhhhhhcCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCHHHHHHHHHHhcCCChhhhhhhccCc
Q 024904 88 -FP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEG--RLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGH 163 (260)
Q Consensus 88 -~~-~vS~AD~ialaa~~av~~~GGP~~~v~~GR~D~~~~~~~~--~lP~~~~~~~~l~~~F~~~~Gls~~elVaL~GaH 163 (260)
|| +|||||||++||++||+.+|||.|+|++||+|+.++.+.+ +||.|..++++|++.| +++|||++|||||+|||
T Consensus 69 ~cp~~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F-~~~Gls~~e~VaLsGaH 147 (230)
T PF00141_consen 69 ACPGVVSCADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGASNLPSPTDSVDQLLAFF-ARKGLSAEEMVALSGAH 147 (230)
T ss_dssp HSTTTS-HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHHHHSSTTTSHHHHHHHHH-HHTT--HHHHHHHHGGG
T ss_pred cccCCCCHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccchhhhhh-hccccchhhhcceeccc
Confidence 77 6999999999999999999999999999999999997643 5999999999999999 99999999999999999
Q ss_pred ccccccCCCCC-------------CC-----------CCCCCCCCccChhhhhhhhhcCCCCcccccccCCCcccccccc
Q 024904 164 TLGRCHKERSG-------------FE-----------GPWTRNPLIFDNSYFTYVSLVSLPDMELLTGEKDGLLQLPSDK 219 (260)
Q Consensus 164 tiG~~h~~~~g-------------~~-----------g~~~~tp~~fDn~Yy~~l~~~~~~~~~l~~g~~~gl~~L~SD~ 219 (260)
|||.+||.... |. -+++ ||.+|||+||+ +|+.+ +|+| +||+
T Consensus 148 TiG~~~c~~f~rl~~~~dp~~d~~~~~~~C~~~~~~~~~~d-tp~~fDN~Yy~----------~ll~~--~gll--~SD~ 212 (230)
T PF00141_consen 148 TIGRAHCSSFSRLYFPPDPTMDPGYAGQNCNSGGDNGVPLD-TPTVFDNSYYK----------NLLNG--RGLL--PSDQ 212 (230)
T ss_dssp GSTEESGGCTGGTSCSSGTTSTHHHHHHSSSTSGCTCEESS-STTS-SSHHHH----------HHHHT--EEEE--HHHH
T ss_pred ccccceeccccccccccccccccccceeccCCCcccccccc-CCCcchhHHHH----------HHhcC--CCcC--HHHH
Confidence 99999996211 00 0234 89999999999 88865 6664 6999
Q ss_pred ccccCCChHHHHHHHhhC
Q 024904 220 ALLDDPVFRPLVEKYAAD 237 (260)
Q Consensus 220 ~L~~d~~t~~~v~~ya~~ 237 (260)
+|+.|++|+++|++||+|
T Consensus 213 ~L~~d~~t~~~V~~yA~d 230 (230)
T PF00141_consen 213 ALLNDPETRPIVERYAQD 230 (230)
T ss_dssp HHHHSTTHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHhcC
Confidence 999999999999999986
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=5.5e-55 Score=429.59 Aligned_cols=239 Identities=37% Similarity=0.619 Sum_probs=208.5
Q ss_pred HHHHHHHHHhhHhhcC---------CchHHHHHHHhhccCccccCCCCCCCC-ccccChhhhhccccCchHHHHHHHHHH
Q 024904 15 AVEKCKRKLRGFIAEK---------NCAPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAVRLLEPF 84 (260)
Q Consensus 15 ~v~~~~~~i~~~~~~~---------~~a~~~lRl~FHDc~~~d~~~~~gG~d-gsi~~~~E~~~~~N~gl~~~~~~i~~~ 84 (260)
.++.+|++|+++++++ +++|.+|||+||+++||+.+++.||++ |+|++.+|++||.|.+|++++++|++|
T Consensus 53 d~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~P~~sw~~N~~Ldka~~lL~pI 132 (716)
T TIGR00198 53 DLAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFAPLNSWPDNVNLDKARRLLWPI 132 (716)
T ss_pred cHHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecccccCchhhhhHHHHHHHHHHH
Confidence 3455899999999885 699999999999999999999999996 799999999999999999999999999
Q ss_pred HHhCC-CCchhHHHHhhhhhhhhhcCCCCCCCCCCCCCCCCCC-------------------------------------
Q 024904 85 KEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP------------------------------------- 126 (260)
Q Consensus 85 k~~~~-~vS~AD~ialaa~~av~~~GGP~~~v~~GR~D~~~~~------------------------------------- 126 (260)
|++|| .|||||||+|||++||+.+|||.|+|.+||+|++.+.
T Consensus 133 k~kyp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~~~~~l~~p~a~~~~Gliyvn 212 (716)
T TIGR00198 133 KKKYGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSREDRESLENPLAATEMGLIYVN 212 (716)
T ss_pred HHHCCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhccccccccccccchhhhccccccC
Confidence 99998 7999999999999999999999999999999995431
Q ss_pred CCC--CCCCCCCCHHHHHHHHHHhcCCChhhhhhhc-cCcccccccCC--------------------------------
Q 024904 127 QEG--RLPDAKQGNDHLRQVFGAQMGLSDKDIVALS-GGHTLGRCHKE-------------------------------- 171 (260)
Q Consensus 127 ~~~--~lP~~~~~~~~l~~~F~~~~Gls~~elVaL~-GaHtiG~~h~~-------------------------------- 171 (260)
+.+ .+|.|..++.+|++.| .++|||.+|||||+ ||||||++||.
T Consensus 213 peg~~~lPdP~~sa~~Lrd~F-~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rlg~dP~~~~~~~~gLg~~c~~~~g~g~ 291 (716)
T TIGR00198 213 PEGPDGHPDPLCTAQDIRTTF-ARMGMNDEETVALIAGGHTVGKCHGAGPAELIGPDPEGAPIEEQGLGWHNQYGKGVGR 291 (716)
T ss_pred cccccCCCCCCCCHHHHHHHH-HHcCCChHHHeeeecCceeccccCCCcccccCCCCCCcCHHHHHHhcccCCCCCCCCC
Confidence 122 6999999999999999 99999999999995 99999999994
Q ss_pred ---CCCCCCCCCCCCCccChhhhhhhhhc-----CCC----------------CcccccccCCCccccccccccccCCCh
Q 024904 172 ---RSGFEGPWTRNPLIFDNSYFTYVSLV-----SLP----------------DMELLTGEKDGLLQLPSDKALLDDPVF 227 (260)
Q Consensus 172 ---~~g~~g~~~~tp~~fDn~Yy~~l~~~-----~~~----------------~~~l~~g~~~gl~~L~SD~~L~~d~~t 227 (260)
.++++|+|+.||.+|||+||++|+.. ..| +..-..+ .....+|+||++|..|+++
T Consensus 292 dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~~~~p~~~~~~~-~~~~~mL~SDlaL~~Dp~~ 370 (716)
T TIGR00198 292 DTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAPEIIPDVEDPNK-KHNPIMLDADLALRFDPEF 370 (716)
T ss_pred CcccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeeccccccccccccccc-ccccCccchhHHhccCccH
Confidence 24566889999999999999988753 111 1110011 1235567899999999999
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHhC
Q 024904 228 RPLVEKYAADEDAFFADYAEAHLKLSEL 255 (260)
Q Consensus 228 ~~~v~~ya~~~~~F~~~F~~Am~Km~~l 255 (260)
+++|++||.|+++|+++|++||.||++.
T Consensus 371 r~iVe~yA~d~~~F~~dFA~Aw~KL~~~ 398 (716)
T TIGR00198 371 RKISRRFLREPDYFAEAFAKAWFKLTHR 398 (716)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999999953
No 12
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=3.4e-53 Score=414.93 Aligned_cols=246 Identities=35% Similarity=0.588 Sum_probs=212.4
Q ss_pred HHHHHHHHHHHHHHHhhHhhcC---------CchHHHHHHHhhccCccccCCCCCCCC-ccccChhhhhccccCchHHHH
Q 024904 9 SEDYKKAVEKCKRKLRGFIAEK---------NCAPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAV 78 (260)
Q Consensus 9 ~~~v~~~v~~~~~~i~~~~~~~---------~~a~~~lRl~FHDc~~~d~~~~~gG~d-gsi~~~~E~~~~~N~gl~~~~ 78 (260)
++.=.=.++.+|++|+++++++ +++|.+|||+||+++|||.++++||++ |+|++.+|.++|.|.+|++++
T Consensus 49 ~~~~~ld~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~pe~~w~~N~gL~ka~ 128 (726)
T PRK15061 49 EEFKKLDLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFAPLNSWPDNVNLDKAR 128 (726)
T ss_pred HHhchhhHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCcccccchhhhhHHHHH
Confidence 3333345667899999999876 699999999999999999999999997 799999999999999999999
Q ss_pred HHHHHHHHhCC-CCchhHHHHhhhhhhhhhcCCCCCCCCCCCCCCCCCCC------------------------------
Q 024904 79 RLLEPFKEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQ------------------------------ 127 (260)
Q Consensus 79 ~~i~~~k~~~~-~vS~AD~ialaa~~av~~~GGP~~~v~~GR~D~~~~~~------------------------------ 127 (260)
++|++||++++ .||+||+|+||+++||+.+|||.|+|.+||.|...+..
T Consensus 129 ~~L~pik~ky~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~~~~~~l~~pl~a~ 208 (726)
T PRK15061 129 RLLWPIKQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERYSGERDLENPLAAV 208 (726)
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCccccccccccccccccccccchhhh
Confidence 99999999997 79999999999999999999999999999999875421
Q ss_pred -----------CCCCCCCCCCHHHHHHHHHHhcCCChhhhhhhc-cCcccccccCC------------------------
Q 024904 128 -----------EGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALS-GGHTLGRCHKE------------------------ 171 (260)
Q Consensus 128 -----------~~~lP~~~~~~~~l~~~F~~~~Gls~~elVaL~-GaHtiG~~h~~------------------------ 171 (260)
+.-+|.|..++.+|++.| .+|||+.+|+|||+ ||||||++||.
T Consensus 209 ~mgliyvnpegp~glPdP~~sa~~lR~tF-~RMGmnDeEtVALiaGgHT~GkaHca~~~~rlgpdP~~a~~~~qgLgw~~ 287 (726)
T PRK15061 209 QMGLIYVNPEGPNGNPDPLAAARDIRETF-ARMAMNDEETVALIAGGHTFGKTHGAGDASHVGPEPEAAPIEEQGLGWKN 287 (726)
T ss_pred hccceecCCCCCCCCCCcccCHHHHHHHH-HHcCCCHHHheeeccCCceeeeCCCcCcccccCCCCCcCHHHHHhccccc
Confidence 112799999999999999 99999999999995 99999999994
Q ss_pred -----------CCCCCCCCCCCCCccChhhhhhhhhc-----CCCCc------------ccc-----cccCCCccccccc
Q 024904 172 -----------RSGFEGPWTRNPLIFDNSYFTYVSLV-----SLPDM------------ELL-----TGEKDGLLQLPSD 218 (260)
Q Consensus 172 -----------~~g~~g~~~~tp~~fDn~Yy~~l~~~-----~~~~~------------~l~-----~g~~~gl~~L~SD 218 (260)
.+|++|+|+.||.+|||+||++|+.. ..|.- +.. .+..+.+++|+||
T Consensus 288 ~c~~g~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~~~~~~~~pd~~~~~~~~~~~MLtSD 367 (726)
T PRK15061 288 SYGSGKGADTITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKDGAAEDTVPDAHDPSKKHAPTMLTTD 367 (726)
T ss_pred cCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccCccccccCCcccccccccCccccccc
Confidence 13577899999999999999988753 22210 000 0112356788999
Q ss_pred cccccCCChHHHHHHHhhCHHHHHHHHHHHHHHHHhC
Q 024904 219 KALLDDPVFRPLVEKYAADEDAFFADYAEAHLKLSEL 255 (260)
Q Consensus 219 ~~L~~d~~t~~~v~~ya~~~~~F~~~F~~Am~Km~~l 255 (260)
++|..|+.++++|++|+.|+++|+++|++||.||+..
T Consensus 368 ~AL~~DP~~r~iV~~fA~d~~~F~~~FA~A~~KL~hr 404 (726)
T PRK15061 368 LALRFDPEYEKISRRFLENPEEFADAFARAWFKLTHR 404 (726)
T ss_pred HHhhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999663
No 13
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=1.2e-51 Score=366.46 Aligned_cols=209 Identities=29% Similarity=0.446 Sum_probs=178.1
Q ss_pred hcCCchHHHHHHHhhccCccccCCCCCCCCccccChhhhhccccCchH--HHHHHHHHHHHhCCCCchhHHHHhhhhhhh
Q 024904 28 AEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLD--IAVRLLEPFKEQFPTISYADLYQLAGVVGV 105 (260)
Q Consensus 28 ~~~~~a~~~lRl~FHDc~~~d~~~~~gG~dgsi~~~~E~~~~~N~gl~--~~~~~i~~~k~~~~~vS~AD~ialaa~~av 105 (260)
.++.+++.+|||+||||++||...+.|||||||++ |..+++|.|+. ..++.++.++. +.|||||||||||++||
T Consensus 37 ~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIll--e~~~~En~G~~~n~~l~~~~~i~~--~~VScADiialAa~~AV 112 (264)
T cd08201 37 PGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQY--ELDRPENIGSGFNTTLNFFVNFYS--PRSSMADLIAMGVVTSV 112 (264)
T ss_pred CCccHHHHHHHHHHHhhcCcccCCCCCCCCcceee--cCCChhhccCchhhccccceeecc--CccCHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999998 57788998875 23444444432 47999999999999999
Q ss_pred hhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCChhhhhhhcc-CcccccccCCCC------CCC--
Q 024904 106 EVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSG-GHTLGRCHKERS------GFE-- 176 (260)
Q Consensus 106 ~~~GGP~~~v~~GR~D~~~~~~~~~lP~~~~~~~~l~~~F~~~~Gls~~elVaL~G-aHtiG~~h~~~~------g~~-- 176 (260)
+.+|||.|+|++||+|++++.+.+ ||.|+.++++|++.| +++||+.+|||+|+| |||||++||..+ ++.
T Consensus 113 ~~~GGP~i~v~~GR~Da~~s~~~g-lP~P~~~v~~l~~~F-a~~Gfs~~DmVaLsggaHTiG~ahc~~f~~~~~~g~~~~ 190 (264)
T cd08201 113 ASCGGPVVPFRAGRIDATEAGQAG-VPEPQTDLGTTTESF-RRQGFSTSEMIALVACGHTLGGVHSEDFPEIVPPGSVPD 190 (264)
T ss_pred HHcCCCeecccccCCCcccccccc-CCCCccCHHHHHHHH-HHcCCChHHHheeecCCeeeeecccccchhhcCCccccC
Confidence 999999999999999999998876 999999999999999 999999999999995 999999999764 443
Q ss_pred C--CCCCCCCccChhhhhhhhhcCCCCcccccccCCCccc------cccccccccCCChHHHHHHHhhCHHHHHHHHHHH
Q 024904 177 G--PWTRNPLIFDNSYFTYVSLVSLPDMELLTGEKDGLLQ------LPSDKALLDDPVFRPLVEKYAADEDAFFADYAEA 248 (260)
Q Consensus 177 g--~~~~tp~~fDn~Yy~~l~~~~~~~~~l~~g~~~gl~~------L~SD~~L~~d~~t~~~v~~ya~~~~~F~~~F~~A 248 (260)
+ ||+.||.+|||+||. +++.|+..++|+ +.||..++.... ...++.++ ++..|.+.++..
T Consensus 191 ~~~p~dstp~~FDn~~f~----------E~l~g~~~~~L~~~~~~~~~sd~r~f~~d~-n~t~~~l~-~~~~f~~~c~~~ 258 (264)
T cd08201 191 TVLQFFDTTIQFDNKVVT----------EYLSGTTNNPLVVGPNNTTNSDLRIFSSDG-NVTMNELA-SPDTFQKTCADI 258 (264)
T ss_pred CCCCCCCCccccchHHHH----------HHhcCCCCCceeecCCCCccchhhheecCc-cHHHHHhc-ChHHHHHHHHHH
Confidence 3 899999999999999 666665556553 367777776443 44567777 799999999999
Q ss_pred HHHHHh
Q 024904 249 HLKLSE 254 (260)
Q Consensus 249 m~Km~~ 254 (260)
++||++
T Consensus 259 ~~~mi~ 264 (264)
T cd08201 259 LQRMID 264 (264)
T ss_pred HHHHhC
Confidence 999984
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=1.1e-48 Score=351.34 Aligned_cols=237 Identities=28% Similarity=0.424 Sum_probs=197.5
Q ss_pred HHHHHHHHHHhhHhhcCCchHHHHHHHhhccCccccCCCCCCCCcc-ccChhhhhccccCc--hHHHHHHHHHHHHhCC-
Q 024904 14 KAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSANNG--LDIAVRLLEPFKEQFP- 89 (260)
Q Consensus 14 ~~v~~~~~~i~~~~~~~~~a~~~lRl~FHDc~~~d~~~~~gG~dgs-i~~~~E~~~~~N~g--l~~~~~~i~~~k~~~~- 89 (260)
+.|+..|++ ++....++|.+|||+||++++|+.++++||+||+ |++.+|++|+.|.+ |..++.+|++||+++|
T Consensus 14 ~di~~lk~~---i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~pe~~w~~N~~~~L~~~~~~Le~ik~~~~~ 90 (297)
T cd08200 14 ADIAALKAK---ILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRLAPQKDWEVNEPEELAKVLAVLEGIQKEFNE 90 (297)
T ss_pred HHHHHHHHH---HHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccCccccCcCccCcHHHHHHHHHHHHHHHHhcc
Confidence 344444433 4555678999999999999999999999999996 99999999999999 9999999999999997
Q ss_pred ------CCchhHHHHhhhhhhhhhcCC-----CCCCCCCCCCCCCCCCC-----CCCCCCCC------------CCHHHH
Q 024904 90 ------TISYADLYQLAGVVGVEVTGG-----PDIPFHPGRDDKAEPPQ-----EGRLPDAK------------QGNDHL 141 (260)
Q Consensus 90 ------~vS~AD~ialaa~~av~~~GG-----P~~~v~~GR~D~~~~~~-----~~~lP~~~------------~~~~~l 141 (260)
.||+||+|+||+++|||.+|| |.|+|.+||.|+..+.. ..++|.+. ...+.|
T Consensus 91 ~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~~L 170 (297)
T cd08200 91 SQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEEML 170 (297)
T ss_pred cccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHHHH
Confidence 799999999999999999999 99999999999988632 12445432 134679
Q ss_pred HHHHHHhcCCChhhhhhhccCc-ccccccCCCCCCCCCCCCCCCccChhhhhhhhhcCCCC------ccccccc--CCCc
Q 024904 142 RQVFGAQMGLSDKDIVALSGGH-TLGRCHKERSGFEGPWTRNPLIFDNSYFTYVSLVSLPD------MELLTGE--KDGL 212 (260)
Q Consensus 142 ~~~F~~~~Gls~~elVaL~GaH-tiG~~h~~~~g~~g~~~~tp~~fDn~Yy~~l~~~~~~~------~~l~~g~--~~gl 212 (260)
++.| .++|||.+|||||+||| ++|.+|. +++ .|+|+.+|.+|||.||++|+.....+ ..+..|. ..|.
T Consensus 171 rd~f-~rlglsd~EmvaL~Gg~r~lG~~~~-~s~-~G~wT~~p~~f~N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~ 247 (297)
T cd08200 171 VDKA-QLLTLTAPEMTVLVGGLRVLGANYG-GSK-HGVFTDRPGVLTNDFFVNLLDMSTEWKPADEDDGLFEGRDRKTGE 247 (297)
T ss_pred HHHH-HhCCCChHHHhheecchhhcccCCC-CCC-CCCCcCCCCccccHHHHHHhcccceeeecCCCCCceeeccCCCCc
Confidence 9999 99999999999999998 7999997 454 59999999999999999888643211 1222211 1122
Q ss_pred ---cccccccccccCCChHHHHHHHhhC--HHHHHHHHHHHHHHHHhCC
Q 024904 213 ---LQLPSDKALLDDPVFRPLVEKYAAD--EDAFFADYAEAHLKLSELG 256 (260)
Q Consensus 213 ---~~L~SD~~L~~d~~t~~~v~~ya~~--~~~F~~~F~~Am~Km~~lg 256 (260)
+++++|..|.+|+++|++|+.||+| +++|+++|++||.||+++.
T Consensus 248 ~~~~~t~~Dl~l~sd~~~R~~ve~YA~dd~~~~F~~DF~~A~~Klmeld 296 (297)
T cd08200 248 VKWTATRVDLVFGSNSELRAVAEVYASDDAQEKFVKDFVAAWTKVMNLD 296 (297)
T ss_pred eeeccChhhhhhccCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhcC
Confidence 3478999999999999999999999 9999999999999999874
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=8.2e-43 Score=343.60 Aligned_cols=229 Identities=27% Similarity=0.420 Sum_probs=192.2
Q ss_pred hHhhcCCchHHHHHHHhhccCccccCCCCCCCCcc-ccChhhhhcccc--CchHHHHHHHHHHHHhCC--CCchhHHHHh
Q 024904 25 GFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSAN--NGLDIAVRLLEPFKEQFP--TISYADLYQL 99 (260)
Q Consensus 25 ~~~~~~~~a~~~lRl~FHDc~~~d~~~~~gG~dgs-i~~~~E~~~~~N--~gl~~~~~~i~~~k~~~~--~vS~AD~ial 99 (260)
.++...-.++.+||++||+|+|||.++++||+||+ |++.+|++++.| .+|..++.+|++||+++| .||.||+|+|
T Consensus 440 ~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~pe~~w~~N~p~gL~~vl~~Le~Ik~~f~~~~vS~ADLivL 519 (716)
T TIGR00198 440 QILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLEPQKNWPVNEPTRLAKVLAVLEKIQAEFAKGPVSLADLIVL 519 (716)
T ss_pred HHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecchhcCcccCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 34566678899999999999999999999999996 999999999999 899999999999999998 8999999999
Q ss_pred hhhhhhhhc---CCC--CCCCCCCCCCCCCCC--CCCCCC---CC------------CCCHHHHHHHHHHhcCCChhhhh
Q 024904 100 AGVVGVEVT---GGP--DIPFHPGRDDKAEPP--QEGRLP---DA------------KQGNDHLRQVFGAQMGLSDKDIV 157 (260)
Q Consensus 100 aa~~av~~~---GGP--~~~v~~GR~D~~~~~--~~~~lP---~~------------~~~~~~l~~~F~~~~Gls~~elV 157 (260)
|+++|||.+ ||| .++|.+||.|+.... +++..| .+ ......|++.| .++|||.+|||
T Consensus 520 aG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~td~~~~~~l~p~adgfRn~~~~~~~~~~~~~l~d~a-~~lglt~~Emv 598 (716)
T TIGR00198 520 GGGAAVEKAALDAGISVNVPFLPGRVDATQAMTDAESFTPLEPIADGFRNYLKRDYAVTPEELLLDKA-QLLTLTAPEMT 598 (716)
T ss_pred HHHHHHHHHHHhCCCCcccCcCCCCCccccCCCCccccccCCCCCcccchhccccccCCHHHHHHHHH-HhCCCChHHHH
Confidence 999999998 897 689999999998763 222222 11 12345689999 99999999999
Q ss_pred hhccCc-ccccccCCCCCCCCCCCCCCCccChhhhhhhhhcCCCCc------cccccc--CCCcccc---ccccccccCC
Q 024904 158 ALSGGH-TLGRCHKERSGFEGPWTRNPLIFDNSYFTYVSLVSLPDM------ELLTGE--KDGLLQL---PSDKALLDDP 225 (260)
Q Consensus 158 aL~GaH-tiG~~h~~~~g~~g~~~~tp~~fDn~Yy~~l~~~~~~~~------~l~~g~--~~gl~~L---~SD~~L~~d~ 225 (260)
||+||| ++|++|.. + +.|+|+.+|.+|||.||++|+...-.+. ....|. ..|.+++ ++|..|.+|+
T Consensus 599 aL~Gg~r~lG~~~~~-s-~~G~~T~~p~~f~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd~ 676 (716)
T TIGR00198 599 VLIGGMRVLGANHGG-S-KHGVFTDRVGVLSNDFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTATRVDLVFGSNS 676 (716)
T ss_pred heecchhhccccCCC-C-CCCCCcCCCCccccHHHHHHhcCCceeeecCCCCceeeeecCCCCceeeccChhheeeccCH
Confidence 999995 99999984 3 4699999999999999998886432211 122221 1244333 7899999999
Q ss_pred ChHHHHHHHhhCH--HHHHHHHHHHHHHHHhCC
Q 024904 226 VFRPLVEKYAADE--DAFFADYAEAHLKLSELG 256 (260)
Q Consensus 226 ~t~~~v~~ya~~~--~~F~~~F~~Am~Km~~lg 256 (260)
++|++|+.||+|+ ++|++||++||.|++++|
T Consensus 677 ~lra~aE~YA~dd~~~~F~~DF~~Aw~Klm~ld 709 (716)
T TIGR00198 677 ILRAVAEVYAQDDAREKFVKDFVAAWTKVMNLD 709 (716)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHHhCC
Confidence 9999999999997 899999999999999987
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=5.1e-42 Score=336.41 Aligned_cols=228 Identities=28% Similarity=0.439 Sum_probs=193.0
Q ss_pred HhhcCCchHHHHHHHhhccCccccCCCCCCCCcc-ccChhhhhccccC--chHHHHHHHHHHHHhC-------CCCchhH
Q 024904 26 FIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSANN--GLDIAVRLLEPFKEQF-------PTISYAD 95 (260)
Q Consensus 26 ~~~~~~~a~~~lRl~FHDc~~~d~~~~~gG~dgs-i~~~~E~~~~~N~--gl~~~~~~i~~~k~~~-------~~vS~AD 95 (260)
|+...-..|.+||++||++.|||.++++||+||. |++.+|++++.|. +|..++.+|++||+++ +.||.||
T Consensus 448 i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~~~~~~~~vS~AD 527 (726)
T PRK15061 448 ILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLAPQKDWEVNEPAQLAKVLAVLEGIQAEFNAAQSGGKKVSLAD 527 (726)
T ss_pred HHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecccccCccccCHHHHHHHHHHHHHHHHHHhhccCCCCceeHHH
Confidence 4555667899999999999999999999999996 9999999999999 9999999999999997 6799999
Q ss_pred HHHhhhhhhhhhc---CC--CCCCCCCCCCCCCCCCC-----CCCCCCCC------------CCHHHHHHHHHHhcCCCh
Q 024904 96 LYQLAGVVGVEVT---GG--PDIPFHPGRDDKAEPPQ-----EGRLPDAK------------QGNDHLRQVFGAQMGLSD 153 (260)
Q Consensus 96 ~ialaa~~av~~~---GG--P~~~v~~GR~D~~~~~~-----~~~lP~~~------------~~~~~l~~~F~~~~Gls~ 153 (260)
+|+||+++|||.+ || |.+||.+||.|+..... ..++|.+. ...+.|++.| .++|||.
T Consensus 528 LivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~td~esf~~l~P~Adgfrny~~~~~~~~~e~~L~d~a-~~lglt~ 606 (726)
T PRK15061 528 LIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQTDVESFAVLEPKADGFRNYLKKGYSVSPEELLVDKA-QLLTLTA 606 (726)
T ss_pred HHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCCCcccccccCCCCccccccccccCCCCHHHHHHHHH-HhCCCCh
Confidence 9999999999998 58 99999999999988632 22567543 1236799999 9999999
Q ss_pred hhhhhhccCc-ccccccCCCCCCCCCCCCCCCccChhhhhhhhhcCCCC------ccccccc--CCCccc---ccccccc
Q 024904 154 KDIVALSGGH-TLGRCHKERSGFEGPWTRNPLIFDNSYFTYVSLVSLPD------MELLTGE--KDGLLQ---LPSDKAL 221 (260)
Q Consensus 154 ~elVaL~GaH-tiG~~h~~~~g~~g~~~~tp~~fDn~Yy~~l~~~~~~~------~~l~~g~--~~gl~~---L~SD~~L 221 (260)
+|||||+||| ++|.+|.. + +.|+|+.+|.+|||.||++|++....+ ..+..|. ..|.++ +++|..|
T Consensus 607 ~EmvaL~Gg~r~Lg~~~~~-S-~~G~~T~~p~~fsNdfFvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvf 684 (726)
T PRK15061 607 PEMTVLVGGLRVLGANYGG-S-KHGVFTDRPGVLTNDFFVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVF 684 (726)
T ss_pred HHHhheecchhhcccCCCC-C-CCCCCcCCCCccccHHHHHHhcCCceeeecCCCCCceeeccCCCcceeeccChhheec
Confidence 9999999997 79999964 5 469999999999999999888643211 1122221 123332 4789999
Q ss_pred ccCCChHHHHHHHhhC--HHHHHHHHHHHHHHHHhCC
Q 024904 222 LDDPVFRPLVEKYAAD--EDAFFADYAEAHLKLSELG 256 (260)
Q Consensus 222 ~~d~~t~~~v~~ya~~--~~~F~~~F~~Am~Km~~lg 256 (260)
.+|+.+|++|+.||+| +++|++||++||.|++++|
T Consensus 685 gsds~lRa~aEvYA~dd~~~kF~~DF~~Aw~Kvmeld 721 (726)
T PRK15061 685 GSNSQLRALAEVYASDDAKEKFVRDFVAAWTKVMNLD 721 (726)
T ss_pred ccCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCC
Confidence 9999999999999999 9999999999999999987
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-40 Score=313.80 Aligned_cols=245 Identities=36% Similarity=0.606 Sum_probs=212.0
Q ss_pred HHHHHHHHHHhhHhhcC---------CchHHHHHHHhhccCccccCCCCCCCC-ccccChhhhhccccCchHHHHHHHHH
Q 024904 14 KAVEKCKRKLRGFIAEK---------NCAPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAVRLLEP 83 (260)
Q Consensus 14 ~~v~~~~~~i~~~~~~~---------~~a~~~lRl~FHDc~~~d~~~~~gG~d-gsi~~~~E~~~~~N~gl~~~~~~i~~ 83 (260)
=.+...|++|+++++++ ...|.+|||+||-+++|+..++.||.. |..+|.++.+||.|.+|++++++|++
T Consensus 67 lD~~Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~G~qRFaPlnSWPDN~nLDKarRLLWP 146 (730)
T COG0376 67 LDLAAVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFAPLNSWPDNANLDKARRLLWP 146 (730)
T ss_pred ccHHHHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCCCCceecccccCCCcccchHHHHHHhhh
Confidence 34556899999999887 478999999999999999999999987 59999999999999999999999999
Q ss_pred HHHhCC-CCchhHHHHhhhhhhhhhcCCCCCCCCCCCCCCCCCCC-----------------------------------
Q 024904 84 FKEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQ----------------------------------- 127 (260)
Q Consensus 84 ~k~~~~-~vS~AD~ialaa~~av~~~GGP~~~v~~GR~D~~~~~~----------------------------------- 127 (260)
||++|+ .||+||+|+|++.+|++.+|++.+.|..||.|...+..
T Consensus 147 IKkKYG~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~PlaavqMGLIY 226 (730)
T COG0376 147 IKKKYGRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAVQMGLIY 226 (730)
T ss_pred HhHhhcccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhheeeeEE
Confidence 999998 89999999999999999999999999999999988743
Q ss_pred -----CCCCCCCCCCHHHHHHHHHHhcCCChhhhhhhc-cCcccccccCCC-----------------------------
Q 024904 128 -----EGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALS-GGHTLGRCHKER----------------------------- 172 (260)
Q Consensus 128 -----~~~lP~~~~~~~~l~~~F~~~~Gls~~elVaL~-GaHtiG~~h~~~----------------------------- 172 (260)
++..|+|-.+..++++.| ++|+++.+|+|||+ ||||+|.+|...
T Consensus 227 VNPEGpng~PDpl~aA~dIRetF-aRMaMNDeETVALiaGGHtfGKtHGag~a~~vg~ePe~a~ie~qGlGW~~~~g~G~ 305 (730)
T COG0376 227 VNPEGPNGNPDPLAAARDIRETF-ARMAMNDEETVALIAGGHTFGKTHGAGPASNVGPEPEAAPIEQQGLGWANTYGSGK 305 (730)
T ss_pred eCCCCCCCCCChhhhHHHHHHHH-HHhcCCcHhhhhhhhcccccccccCCCchhhcCCCccccchhhhccccccccCCCc
Confidence 124788888899999999 99999999999997 799999999842
Q ss_pred ------CCCCCCCCCCCCccChhhhhhhhhc-----CCCCc-----------cccc-----ccCCCccccccccccccCC
Q 024904 173 ------SGFEGPWTRNPLIFDNSYFTYVSLV-----SLPDM-----------ELLT-----GEKDGLLQLPSDKALLDDP 225 (260)
Q Consensus 173 ------~g~~g~~~~tp~~fDn~Yy~~l~~~-----~~~~~-----------~l~~-----g~~~gl~~L~SD~~L~~d~ 225 (260)
+|.+++|+.+|+.|||+||.+|+.+ ..|-- ..+. .....++||.+|.+|..||
T Consensus 306 G~dtitsGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~p~MlttDlaLr~DP 385 (730)
T COG0376 306 GPDTITSGLEGAWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHGPMMLTTDLALRFDP 385 (730)
T ss_pred CcccccccccccCCCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccccCceeeccchhhhcCh
Confidence 2446789999999999999999853 33310 0000 0123678999999999999
Q ss_pred ChHHHHHHHhhCHHHHHHHHHHHHHHHHhCCCCC
Q 024904 226 VFRPLVEKYAADEDAFFADYAEAHLKLSELGFAE 259 (260)
Q Consensus 226 ~t~~~v~~ya~~~~~F~~~F~~Am~Km~~lgv~~ 259 (260)
.++++.++|..|++.|.+.|+.||.||...+.-|
T Consensus 386 ~Y~kIs~rf~e~pd~F~~~FArAWfKLtHRDMGP 419 (730)
T COG0376 386 EYEKISRRFLEDPDEFADAFARAWFKLTHRDMGP 419 (730)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHhhccCCc
Confidence 9999999999999999999999999999866544
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.82 E-value=1.3e-19 Score=172.15 Aligned_cols=228 Identities=27% Similarity=0.407 Sum_probs=179.3
Q ss_pred HhhcCCchHHHHHHHhhccCccccCCCCCCCCc-cccChhhhhccccC--chHHHHHHHHHHHHhCC-CCchhHHHHhhh
Q 024904 26 FIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAEQAHSANN--GLDIAVRLLEPFKEQFP-TISYADLYQLAG 101 (260)
Q Consensus 26 ~~~~~~~a~~~lRl~FHDc~~~d~~~~~gG~dg-si~~~~E~~~~~N~--gl~~~~~~i~~~k~~~~-~vS~AD~ialaa 101 (260)
|+...-..+.++..+|-.+.+|..|++.||+|| .|++.+.++|+.|. .|.+++.+++.|++.+. .||.||+|+|++
T Consensus 458 IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLaPqkdWevN~P~~l~kvl~~le~iq~~fnkkvSlADlIVL~G 537 (730)
T COG0376 458 ILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLAPQKDWEVNQPAELAKVLAVLEKIQKEFNKKVSLADLIVLGG 537 (730)
T ss_pred HHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeecccccCCCCCHHHHHHHHHHHHHHHHHhcCccchhHheeecc
Confidence 556666778999999999999999999999998 99999999999995 77788999999999987 699999999999
Q ss_pred hhhhhhc---CCC--CCCCCCCCCCCCCCCC-----CCCCCC-----------CCCCH-HHHHHHHHHhcCCChhhhhhh
Q 024904 102 VVGVEVT---GGP--DIPFHPGRDDKAEPPQ-----EGRLPD-----------AKQGN-DHLRQVFGAQMGLSDKDIVAL 159 (260)
Q Consensus 102 ~~av~~~---GGP--~~~v~~GR~D~~~~~~-----~~~lP~-----------~~~~~-~~l~~~F~~~~Gls~~elVaL 159 (260)
..+|+.+ +|- .+||..||.|+.+... .-.-|- ...+. .-|+++- ..++|+..||++|
T Consensus 538 ~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtDv~sf~~LeP~aDGfRNy~~~~~~~~pe~~LvDkA-qlL~LtapemtVL 616 (730)
T COG0376 538 NAAVEKAAKAAGFSVTVPFAPGRTDASQEQTDVESFAVLEPIADGFRNYVKKDYVLTPEELLVDKA-QLLTLTAPEMTVL 616 (730)
T ss_pred hHHHHHHHHhcCceeeeccCCCCcccchhhcchhhhhcccccchhhhhhccCCCcCCHHHHHHHHH-HHhccCCccceEE
Confidence 9999974 454 5688999999987521 111111 11233 3488888 9999999999999
Q ss_pred ccCc-ccccccCCCCCCCCCCCCCCCccChhhhhhhhhcCCCC------cccccccC--CCcc---ccccccccccCCCh
Q 024904 160 SGGH-TLGRCHKERSGFEGPWTRNPLIFDNSYFTYVSLVSLPD------MELLTGEK--DGLL---QLPSDKALLDDPVF 227 (260)
Q Consensus 160 ~GaH-tiG~~h~~~~g~~g~~~~tp~~fDn~Yy~~l~~~~~~~------~~l~~g~~--~gl~---~L~SD~~L~~d~~t 227 (260)
+||- .+|..+... -.|.++..|.++.|.||.+|++....+ -++.+|.. .|.+ ....|..+-+++..
T Consensus 617 iGGlRvLg~n~g~s--~~GVfT~~pg~LtndFFvnLlDM~~~W~~~~~~~~~feg~DrktG~~kwt~trvDLvfGsns~L 694 (730)
T COG0376 617 IGGLRVLGANYGGS--KHGVFTDRPGVLTNDFFVNLLDMGTEWKPTDDARGLFEGRDRKTGEVKWTATRVDLVFGSNSEL 694 (730)
T ss_pred EcceEeeccCCCCC--ccceeccCcccccchhhhhhhhccceeeeccccccceeccccccCceEeeeeEEeEEecCcHHH
Confidence 9987 567765521 257889999999999999888753322 23333311 1322 12478888999999
Q ss_pred HHHHHHHhhC--HHHHHHHHHHHHHHHHhCC
Q 024904 228 RPLVEKYAAD--EDAFFADYAEAHLKLSELG 256 (260)
Q Consensus 228 ~~~v~~ya~~--~~~F~~~F~~Am~Km~~lg 256 (260)
|.+.+.|+++ +++|.+||+.||.|..++.
T Consensus 695 RA~aEVYa~dda~ekFv~DFvaaw~kVMn~D 725 (730)
T COG0376 695 RALAEVYASDDAKEKFVKDFVAAWTKVMNLD 725 (730)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHhccc
Confidence 9999999986 8899999999999998763
No 19
>PTZ00411 transaldolase-like protein; Provisional
Probab=50.25 E-value=20 Score=33.68 Aligned_cols=87 Identities=14% Similarity=0.110 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHhhhhhhhh--hcCCCCCCCCCCCCCCCCCCCC--CCC-CCCC---CCHHHHHHHHHH
Q 024904 76 IAVRLLEPFKEQFPTISYADLYQLAGVVGVE--VTGGPDIPFHPGRDDKAEPPQE--GRL-PDAK---QGNDHLRQVFGA 147 (260)
Q Consensus 76 ~~~~~i~~~k~~~~~vS~AD~ialaa~~av~--~~GGP~~~v~~GR~D~~~~~~~--~~l-P~~~---~~~~~l~~~F~~ 147 (260)
.|++++..++++ .|.|-=.+.+....|+. .+|-..+..++||.+.+.-.+. ... +... ..+.++.+.| +
T Consensus 148 eGi~Aa~~L~~e--GI~~N~TlvFS~~QA~aaaeAGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~-k 224 (333)
T PTZ00411 148 EGIQAAKALEKE--GIHCNLTLLFSFAQAVACAQAGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYY-K 224 (333)
T ss_pred HHHHHHHHHHHC--CCceeEeEecCHHHHHHHHHcCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHH-H
Confidence 356666666554 33333333333333333 2577788999999977643221 112 2222 2356677788 8
Q ss_pred hcCCC----------hhhhhhhccCccc
Q 024904 148 QMGLS----------DKDIVALSGGHTL 165 (260)
Q Consensus 148 ~~Gls----------~~elVaL~GaHti 165 (260)
+.|+. .+|+..|+|+|.+
T Consensus 225 ~~g~~T~Im~ASfRn~~qi~~laG~D~l 252 (333)
T PTZ00411 225 KHGYKTIVMGASFRNTGEILELAGCDKL 252 (333)
T ss_pred HcCCCeEEEecccCCHHHHHHHHCCCEE
Confidence 88774 5788888999843
No 20
>PRK12346 transaldolase A; Provisional
Probab=49.24 E-value=19 Score=33.65 Aligned_cols=87 Identities=15% Similarity=0.103 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHhhhhhhhh--hcCCCCCCCCCCCCCCCCCCC--CCCC-CCCC---CCHHHHHHHHHH
Q 024904 76 IAVRLLEPFKEQFPTISYADLYQLAGVVGVE--VTGGPDIPFHPGRDDKAEPPQ--EGRL-PDAK---QGNDHLRQVFGA 147 (260)
Q Consensus 76 ~~~~~i~~~k~~~~~vS~AD~ialaa~~av~--~~GGP~~~v~~GR~D~~~~~~--~~~l-P~~~---~~~~~l~~~F~~ 147 (260)
.|++.+..++++ .|+|-=.+.+....++. .+|-..+..++||.|.+.-.. ...+ |... ..+.++.+.| +
T Consensus 137 eGi~A~~~L~~~--GI~~n~TliFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~-k 213 (316)
T PRK12346 137 EGIRAAEELEKE--GINCNLTLLFSFAQARACAEAGVFLISPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYY-K 213 (316)
T ss_pred HHHHHHHHHHHC--CCceeEEEecCHHHHHHHHHcCCCEEEecccHHHHhhhhccccccccccCCChHHHHHHHHHHH-H
Confidence 356666666554 44444444444444433 367788999999999864321 1112 1122 2366678888 8
Q ss_pred hcCCC----------hhhhhhhccCccc
Q 024904 148 QMGLS----------DKDIVALSGGHTL 165 (260)
Q Consensus 148 ~~Gls----------~~elVaL~GaHti 165 (260)
+.|+. .+|+.+|.|+|.+
T Consensus 214 ~~~~~T~Vm~ASfRn~~qi~alaG~d~l 241 (316)
T PRK12346 214 QHRYETIVMGASFRRTEQILALAGCDRL 241 (316)
T ss_pred HcCCCcEEEecccCCHHHHHHHhCCCEE
Confidence 88764 5778888888843
No 21
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=48.66 E-value=20 Score=33.38 Aligned_cols=85 Identities=14% Similarity=0.121 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHhhhhhhhh--hcCCCCCCCCCCCCCCCCCCCCC--CCCC----CCCCHHHHHHHHHH
Q 024904 76 IAVRLLEPFKEQFPTISYADLYQLAGVVGVE--VTGGPDIPFHPGRDDKAEPPQEG--RLPD----AKQGNDHLRQVFGA 147 (260)
Q Consensus 76 ~~~~~i~~~k~~~~~vS~AD~ialaa~~av~--~~GGP~~~v~~GR~D~~~~~~~~--~lP~----~~~~~~~l~~~F~~ 147 (260)
.|+..+..++++ .|+|-=.+.+....|+. .+|-..+..++||.|-+.-...+ ..+. +-..+.++.+.| +
T Consensus 136 eGi~A~~~L~~~--GI~vn~TlvFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~-~ 212 (313)
T cd00957 136 EGIQAAKQLEKE--GIHCNLTLLFSFAQAVACAEAGVTLISPFVGRILDWYKKHSGDKAYTAEEDPGVASVKKIYNYY-K 212 (313)
T ss_pred HHHHHHHHHHHC--CCceeeeeecCHHHHHHHHHcCCCEEEeecchHHHhhhhccccccCCccCCcHHHHHHHHHHHH-H
Confidence 356666666654 34444334444443333 24777889999999876332111 1111 122366778888 8
Q ss_pred hcCCC----------hhhhhhhccCc
Q 024904 148 QMGLS----------DKDIVALSGGH 163 (260)
Q Consensus 148 ~~Gls----------~~elVaL~GaH 163 (260)
+.|+. ..|+..|.|+|
T Consensus 213 ~~~~~T~vmaASfRn~~~v~~laG~d 238 (313)
T cd00957 213 KFGYKTKVMGASFRNIGQILALAGCD 238 (313)
T ss_pred HcCCCcEEEecccCCHHHHHHHhCCC
Confidence 88875 46677777777
No 22
>cd07922 CarBa CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. 2-aminophenol 1,6-dioxygenase is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, the enzyme has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=48.66 E-value=9.6 Score=28.42 Aligned_cols=30 Identities=27% Similarity=0.578 Sum_probs=22.4
Q ss_pred HHHHHhhCHHHHHHHHH-----------HHHHHHHhCCCCC
Q 024904 230 LVEKYAADEDAFFADYA-----------EAHLKLSELGFAE 259 (260)
Q Consensus 230 ~v~~ya~~~~~F~~~F~-----------~Am~Km~~lgv~~ 259 (260)
+.++|..|++.+++.|. .-|.+|..+|++|
T Consensus 19 ~rerF~~DPea~~~~~gLt~eE~~aL~~~D~~~L~~lGvhp 59 (81)
T cd07922 19 LIERFQDDPSAVFEEYGLTPAERAALREGTFGALTSIGVHP 59 (81)
T ss_pred HHHHHHHCHHHHHHHcCCCHHHHHHHHccCHHHHHHcCCCH
Confidence 55678888888887773 3477888888876
No 23
>PRK05264 transcriptional repressor protein MetJ; Provisional
Probab=46.20 E-value=14 Score=28.24 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=27.2
Q ss_pred cccccCCChHHHHH--HHhhCHHHHHHHHHHHHH
Q 024904 219 KALLDDPVFRPLVE--KYAADEDAFFADYAEAHL 250 (260)
Q Consensus 219 ~~L~~d~~t~~~v~--~ya~~~~~F~~~F~~Am~ 250 (260)
...++|.+||..|+ +.|+|.++..+.|-.||.
T Consensus 34 LkiLTdERTRRQvnNLRHATNSELLCEAFLHA~T 67 (105)
T PRK05264 34 LKILTDERTRRQVNNLRHATNSELLCEAFLHAFT 67 (105)
T ss_pred HHHHhhHHHHHHHhhhhhcccHHHHHHHHHHHHc
Confidence 45678999999997 679999999999988874
No 24
>cd00490 Met_repressor_MetJ Met Repressor, MetJ. MetJ is a bacterial regulatory protein that uses S-adenosylmethionine (SAM) as a corepressor to regulate the production of Methionine. MetJ binds arrays of two to five adjacent copies of an eight base-pair 'metbox' sequence. MetJ forms sufficiently strong interactions with the sugar-phosphate backbone to accomodate sequence variation in natural operators. However, it is very sensitive to particular base changes in the operator. MetJ exists as a homodimer.
Probab=44.43 E-value=16 Score=27.71 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=27.0
Q ss_pred cccccCCChHHHHH--HHhhCHHHHHHHHHHHHH
Q 024904 219 KALLDDPVFRPLVE--KYAADEDAFFADYAEAHL 250 (260)
Q Consensus 219 ~~L~~d~~t~~~v~--~ya~~~~~F~~~F~~Am~ 250 (260)
...++|.+||..|+ +.|+|.++..+.|-.||.
T Consensus 33 LkiLTdERTRRQvnnlRHATNSELLCEAFLHAfT 66 (103)
T cd00490 33 LKILTDERTRRQVNNLRHATNSELLCEAFLHAFT 66 (103)
T ss_pred HHHHhhHHHHHHHhhhhhcccHHHHHHHHHHHhc
Confidence 34578999999997 679999999999988874
No 25
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=41.64 E-value=35 Score=32.75 Aligned_cols=87 Identities=17% Similarity=0.190 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHhhhhhhhh--hcCCCCCCCCCCCCCCCCCCCCC--CCCCCC----CCHHHHHHHHHH
Q 024904 76 IAVRLLEPFKEQFPTISYADLYQLAGVVGVE--VTGGPDIPFHPGRDDKAEPPQEG--RLPDAK----QGNDHLRQVFGA 147 (260)
Q Consensus 76 ~~~~~i~~~k~~~~~vS~AD~ialaa~~av~--~~GGP~~~v~~GR~D~~~~~~~~--~lP~~~----~~~~~l~~~F~~ 147 (260)
.|+.++..++++ .|.|-=.+.+....|+. .+|-..+..++||.|.+.-...+ .+|... ..+.++.+.| +
T Consensus 142 eGi~A~~~L~~~--GI~~n~TlvFS~~QA~aaaeAGa~~ISPfVgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~-~ 218 (391)
T PRK12309 142 EGIKAAEVLEKE--GIHCNLTLLFGFHQAIACAEAGVTLISPFVGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYY-K 218 (391)
T ss_pred HHHHHHHHHHHC--CCceeeeeecCHHHHHHHHHcCCCEEEeecchhhhhhhhccCCCccccccchHHHHHHHHHHHH-H
Confidence 456666666554 34443333444443333 25778899999999886543222 133222 2366677888 7
Q ss_pred hcCCC----------hhhhhhhccCccc
Q 024904 148 QMGLS----------DKDIVALSGGHTL 165 (260)
Q Consensus 148 ~~Gls----------~~elVaL~GaHti 165 (260)
+.|+. .+++..|+|+|.+
T Consensus 219 ~~~~~T~Im~ASfRn~~~v~~laG~d~~ 246 (391)
T PRK12309 219 KFGYKTEVMGASFRNIGEIIELAGCDLL 246 (391)
T ss_pred hcCCCcEEEecccCCHHHHHHHHCCCee
Confidence 87764 5677888888843
No 26
>PRK05269 transaldolase B; Provisional
Probab=39.59 E-value=20 Score=33.42 Aligned_cols=87 Identities=15% Similarity=0.103 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHhhhhhhhh--hcCCCCCCCCCCCCCCCCCCC---CCCCCC---CCCCHHHHHHHHHH
Q 024904 76 IAVRLLEPFKEQFPTISYADLYQLAGVVGVE--VTGGPDIPFHPGRDDKAEPPQ---EGRLPD---AKQGNDHLRQVFGA 147 (260)
Q Consensus 76 ~~~~~i~~~k~~~~~vS~AD~ialaa~~av~--~~GGP~~~v~~GR~D~~~~~~---~~~lP~---~~~~~~~l~~~F~~ 147 (260)
.|+..+..++++ .|.|-=.+.+....|+. .+|-..+..++||.|.+.-.. ...-+. +-..+.++.+.| +
T Consensus 138 eGi~A~~~L~~~--GI~vn~TlvFs~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~-k 214 (318)
T PRK05269 138 EGIRAAEQLEKE--GINCNLTLLFSFAQARACAEAGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYY-K 214 (318)
T ss_pred HHHHHHHHHHHc--CCceeEeEecCHHHHHHHHHcCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHH-H
Confidence 356666666554 33333333333333322 357788899999998763211 111111 223467788888 8
Q ss_pred hcCCC----------hhhhhhhccCccc
Q 024904 148 QMGLS----------DKDIVALSGGHTL 165 (260)
Q Consensus 148 ~~Gls----------~~elVaL~GaHti 165 (260)
+.|+. ..++..|.|+|++
T Consensus 215 ~~~~~t~im~ASfrn~~~v~~laG~d~v 242 (318)
T PRK05269 215 KHGYKTVVMGASFRNTGQILELAGCDRL 242 (318)
T ss_pred HcCCCceEEeeccCCHHHHHHHhCCCeE
Confidence 88875 4667777787744
No 27
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=37.84 E-value=27 Score=32.54 Aligned_cols=86 Identities=15% Similarity=0.145 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHhhhhhhh--hhcCCCCCCCCCCCCCCCCCCCCC--CC-CC---CCCCHHHHHHHHHH
Q 024904 76 IAVRLLEPFKEQFPTISYADLYQLAGVVGV--EVTGGPDIPFHPGRDDKAEPPQEG--RL-PD---AKQGNDHLRQVFGA 147 (260)
Q Consensus 76 ~~~~~i~~~k~~~~~vS~AD~ialaa~~av--~~~GGP~~~v~~GR~D~~~~~~~~--~l-P~---~~~~~~~l~~~F~~ 147 (260)
.|+..+..++++ .|+|-=.+.+....|+ ..+|-..+..++||.+-+.-...+ .. +. +-..+.++.+.| +
T Consensus 136 eGi~A~~~L~~~--GI~vN~TliFS~~Qa~aaa~AGa~~ISPFVgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~-k 212 (317)
T TIGR00874 136 EGIRAAEELEKE--GIHCNLTLLFSFVQAIACAEAKVTLISPFVGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYY-K 212 (317)
T ss_pred HHHHHHHHHHHC--CCceeeeeecCHHHHHHHHHcCCCEEEeecchHhHhhhhccCccccccccCchHHHHHHHHHHH-H
Confidence 356666666554 2333222233333332 235778899999999875332111 11 11 223466688888 8
Q ss_pred hcCCC----------hhhhhhhccCcc
Q 024904 148 QMGLS----------DKDIVALSGGHT 164 (260)
Q Consensus 148 ~~Gls----------~~elVaL~GaHt 164 (260)
+.|+. .+|+.+|.|+|.
T Consensus 213 ~~g~~T~Im~ASfRn~~qv~~laG~d~ 239 (317)
T TIGR00874 213 KHGYPTEVMGASFRNKEEILALAGCDR 239 (317)
T ss_pred HcCCCcEEEeeccCCHHHHHHHHCCCe
Confidence 88874 577788888884
No 28
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=35.37 E-value=19 Score=32.27 Aligned_cols=74 Identities=12% Similarity=-0.060 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHhhhhhhhh--hcCCCCCCCCCCCCCCCCCCC---CCCCCCCCCC---HHHHHHHHHH
Q 024904 76 IAVRLLEPFKEQFPTISYADLYQLAGVVGVE--VTGGPDIPFHPGRDDKAEPPQ---EGRLPDAKQG---NDHLRQVFGA 147 (260)
Q Consensus 76 ~~~~~i~~~k~~~~~vS~AD~ialaa~~av~--~~GGP~~~v~~GR~D~~~~~~---~~~lP~~~~~---~~~l~~~F~~ 147 (260)
.|++++..++++ .|++-=...+....++. .+|...+.+++||.|...-.. .+.=|..... +.++.+.| +
T Consensus 127 ~Gl~A~~~L~~~--GI~vn~T~vfs~~Qa~~aa~Aga~~ispfvgRid~~~~~~~~~~~~d~~~~~gi~~~~~~~~~~-~ 203 (252)
T cd00439 127 EGIPAIKDLIAA--GISVNVTLIFSIAQYEAVADAGTSVASPFVSRIDTLMDKMLEQIGLDLRGKAGVAQVTLAYKLY-K 203 (252)
T ss_pred HHHHHHHHHHHC--CCceeeeeecCHHHHHHHHHcCCCEEEEeccHHHHHhhhhccccccccccCcHHHHHHHHHHHH-H
Confidence 467777777765 34433333444444333 356778899999999876521 1111111122 34566677 6
Q ss_pred hcCCC
Q 024904 148 QMGLS 152 (260)
Q Consensus 148 ~~Gls 152 (260)
..|..
T Consensus 204 ~~~~~ 208 (252)
T cd00439 204 QKFKK 208 (252)
T ss_pred HhCCC
Confidence 66664
No 29
>PF08383 Maf_N: Maf N-terminal region; InterPro: IPR013592 This region is found in various leucine zipper transcription factors of the Maf family. These are implicated in the regulation of insulin gene expression [], in erythroid differentiation [], and in differentiation of the neuroretina [].
Probab=33.69 E-value=26 Score=21.88 Aligned_cols=15 Identities=47% Similarity=0.749 Sum_probs=12.2
Q ss_pred HhcCCChhhhh-hhcc
Q 024904 147 AQMGLSDKDIV-ALSG 161 (260)
Q Consensus 147 ~~~Gls~~elV-aL~G 161 (260)
...|||++|.| ||+|
T Consensus 19 e~l~LtpEDAvEaLi~ 34 (35)
T PF08383_consen 19 EALGLTPEDAVEALIG 34 (35)
T ss_pred hhcCCCHHHHHHHHhc
Confidence 56799999988 7765
No 30
>COG3060 MetJ Transcriptional regulator of met regulon [Transcription / Amino acid transport and metabolism]
Probab=30.90 E-value=37 Score=25.56 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=26.1
Q ss_pred cccccCCChHHHHH--HHhhCHHHHHHHHHHHHH
Q 024904 219 KALLDDPVFRPLVE--KYAADEDAFFADYAEAHL 250 (260)
Q Consensus 219 ~~L~~d~~t~~~v~--~ya~~~~~F~~~F~~Am~ 250 (260)
..+++|.+||..|+ +.|+|.++..+.|-.||.
T Consensus 34 l~ilt~ertrrq~~nlrhatnsellceaflhaft 67 (105)
T COG3060 34 LKILTDERTRRQVNNLRHATNSELLCEAFLHAFT 67 (105)
T ss_pred HHHHhhHHHHHHHHhhhhhhhHHHHHHHHHHHHc
Confidence 34578899999987 678899999999988774
No 31
>PLN00017 photosystem I reaction centre subunit VI; Provisional
Probab=27.54 E-value=32 Score=25.89 Aligned_cols=20 Identities=25% Similarity=0.496 Sum_probs=16.5
Q ss_pred HHhhCHHHHHHHHHHHHHHH
Q 024904 233 KYAADEDAFFADYAEAHLKL 252 (260)
Q Consensus 233 ~ya~~~~~F~~~F~~Am~Km 252 (260)
+|-..|.+||+.|+..+.|=
T Consensus 37 rY~~~QskFFe~~A~~~tkR 56 (90)
T PLN00017 37 RYNPLQSKFFETFAAPFTKR 56 (90)
T ss_pred CCChHHHHHHHHHhhhhhHH
Confidence 46667999999999988774
No 32
>PF01340 MetJ: Met Apo-repressor, MetJ; InterPro: IPR002084 Binding of a specific DNA fragment and S-adenosyl methionine (SAM) co-repressor molecules to the Escherichia coli methionine repressor (MetJ) leads to a significant reduction in dynamic flexibility of the ternary complex, with considerable entropy-enthalpy compensation, not necessarily involving any overall conformational change []. MetJ is a regulatory protein which when combined with S-adenosylmethionine (SAM) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis. It is also autoregulated. The crystal structure of the met repressor-operator complex shows two dimeric repressor molecules bound to adjacent sites 8 base pairs apart on an 18-base-pair DNA fragment. Sequence specificity is achieved by insertion of double-stranded antiparallel protein beta-ribbons into the major groove of B-form DNA, with direct hydrogen-bonding between amino-acid side chains and the base pairs. The repressor also recognises sequence-dependent distortion or flexibility of the operator phosphate backbone, conferring specificity even for inaccessible base pairs [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006555 methionine metabolic process; PDB: 1MJO_D 1CMB_A 1MJQ_C 1CMC_B 1MJK_A 1MJ2_A 1MJP_A 1MJM_B 1CMA_B 1MJL_A ....
Probab=25.98 E-value=15 Score=27.83 Aligned_cols=32 Identities=19% Similarity=0.245 Sum_probs=25.6
Q ss_pred cccccCCChHHHHH--HHhhCHHHHHHHHHHHHH
Q 024904 219 KALLDDPVFRPLVE--KYAADEDAFFADYAEAHL 250 (260)
Q Consensus 219 ~~L~~d~~t~~~v~--~ya~~~~~F~~~F~~Am~ 250 (260)
..+++|.+||..|+ +.|+|.++..+.|-.||.
T Consensus 33 LkvLtdERTrRQvnNLRHATNSeLLcEAFLHAfT 66 (104)
T PF01340_consen 33 LKVLTDERTRRQVNNLRHATNSELLCEAFLHAFT 66 (104)
T ss_dssp HHHHHHHHHHHHHTTBSS-SHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHhhhhhcccHHHHHHHHHHHhc
Confidence 34577889999987 678899999999988885
No 33
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=25.52 E-value=45 Score=29.22 Aligned_cols=69 Identities=10% Similarity=0.130 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHhhhhhhhh--hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCCh
Q 024904 76 IAVRLLEPFKEQFPTISYADLYQLAGVVGVE--VTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSD 153 (260)
Q Consensus 76 ~~~~~i~~~k~~~~~vS~AD~ialaa~~av~--~~GGP~~~v~~GR~D~~~~~~~~~lP~~~~~~~~l~~~F~~~~Gls~ 153 (260)
.|++++..++++ .|.+--...+....|+. .+|--.+..++||.|...-+ +-.-+.++.+.+ +..|++.
T Consensus 89 ~Gl~A~~~L~~~--Gi~v~~T~vfs~~Qa~~Aa~aGa~yispyvgRi~d~g~d-------g~~~v~~~~~~~-~~~~~~t 158 (213)
T TIGR00875 89 EGLKAVKILKKE--GIKTNVTLVFSAAQALLAAKAGATYVSPFVGRLDDIGGD-------GMKLIEEVKTIF-ENHAPDT 158 (213)
T ss_pred HHHHHHHHHHHC--CCceeEEEecCHHHHHHHHHcCCCEEEeecchHHHcCCC-------HHHHHHHHHHHH-HHcCCCC
Confidence 467777777765 22222222233322222 23555778999999885421 233456788888 8888875
Q ss_pred h
Q 024904 154 K 154 (260)
Q Consensus 154 ~ 154 (260)
+
T Consensus 159 k 159 (213)
T TIGR00875 159 E 159 (213)
T ss_pred E
Confidence 4
No 34
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=25.46 E-value=46 Score=22.67 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=21.1
Q ss_pred HHHhhhh---hhhhhcCCCCCCCCCCCCCCCCC
Q 024904 96 LYQLAGV---VGVEVTGGPDIPFHPGRDDKAEP 125 (260)
Q Consensus 96 ~ialaa~---~av~~~GGP~~~v~~GR~D~~~~ 125 (260)
++++|+- +-+..+.||.+++-.||--...+
T Consensus 9 ~l~La~CqT~D~lAtckGpiFpLNVgrWqptps 41 (55)
T PRK13859 9 ALALAGCQTNDTLASCKGPIFPLNVGRWQPTPS 41 (55)
T ss_pred HHHHHhccccCccccccCCccccccccccCChh
Confidence 4556653 55667899999999998655443
Done!