Query 024905
Match_columns 260
No_of_seqs 199 out of 1555
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 08:21:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024905.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024905hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02693 IAA-amino acid hydrol 100.0 2E-44 4.4E-49 330.6 29.4 254 6-259 12-268 (437)
2 PLN02280 IAA-amino acid hydrol 100.0 2.7E-42 5.9E-47 318.9 27.6 228 32-259 91-318 (478)
3 COG1473 AbgB Metal-dependent a 100.0 1.2E-39 2.5E-44 292.1 25.8 230 29-259 4-236 (392)
4 PRK06915 acetylornithine deace 100.0 4E-39 8.7E-44 295.2 26.6 214 24-247 3-245 (422)
5 TIGR01891 amidohydrolases amid 100.0 2.3E-39 5E-44 291.4 24.6 212 41-252 2-215 (363)
6 PRK08588 succinyl-diaminopimel 100.0 3E-37 6.6E-42 278.8 24.1 201 38-247 2-213 (377)
7 PRK06837 acetylornithine deace 100.0 5.2E-37 1.1E-41 281.7 26.0 216 21-246 3-248 (427)
8 PRK13013 succinyl-diaminopimel 100.0 6.1E-37 1.3E-41 281.1 25.2 209 28-245 4-238 (427)
9 PRK13004 peptidase; Reviewed 100.0 1.9E-36 4.2E-41 275.6 26.2 210 27-247 4-223 (399)
10 TIGR03526 selenium_YgeY putati 100.0 2.9E-36 6.3E-41 274.1 26.1 211 27-247 2-221 (395)
11 TIGR03320 ygeY M20/DapE family 100.0 6.1E-36 1.3E-40 272.0 25.1 211 27-247 2-221 (395)
12 PRK13983 diaminopimelate amino 100.0 8E-36 1.7E-40 271.2 23.8 204 35-243 2-232 (400)
13 PRK07338 hypothetical protein; 100.0 7.1E-35 1.5E-39 265.5 25.5 212 25-246 4-243 (402)
14 PRK08201 hypothetical protein; 100.0 3.9E-35 8.4E-40 271.4 23.2 216 25-244 1-239 (456)
15 PRK06133 glutamate carboxypept 100.0 1.5E-34 3.3E-39 264.0 25.8 211 27-246 26-250 (410)
16 TIGR01892 AcOrn-deacetyl acety 100.0 7.9E-35 1.7E-39 261.6 23.1 193 42-246 1-207 (364)
17 PRK07522 acetylornithine deace 100.0 7.7E-35 1.7E-39 263.7 23.0 199 38-247 4-217 (385)
18 PRK13009 succinyl-diaminopimel 100.0 1E-34 2.2E-39 262.1 23.2 205 38-246 2-219 (375)
19 PRK08596 acetylornithine deace 100.0 1.6E-34 3.5E-39 264.7 24.6 207 28-245 3-236 (421)
20 TIGR01246 dapE_proteo succinyl 100.0 2.6E-34 5.6E-39 259.1 22.9 201 41-245 2-215 (370)
21 PRK07473 carboxypeptidase; Pro 100.0 6.6E-34 1.4E-38 257.0 24.5 202 37-246 10-226 (376)
22 PRK05111 acetylornithine deace 100.0 4.3E-34 9.4E-39 258.7 22.8 195 38-245 5-219 (383)
23 PRK09133 hypothetical protein; 100.0 2.9E-34 6.4E-39 266.6 22.1 203 36-244 35-262 (472)
24 TIGR01910 DapE-ArgE acetylorni 100.0 2.5E-34 5.4E-39 259.7 20.8 199 42-247 2-219 (375)
25 PRK07907 hypothetical protein; 100.0 9.6E-34 2.1E-38 261.6 24.7 212 27-244 7-240 (449)
26 PRK06446 hypothetical protein; 100.0 5.4E-34 1.2E-38 262.3 22.0 202 38-244 2-220 (436)
27 TIGR01880 Ac-peptdase-euk N-ac 100.0 1.9E-33 4.2E-38 256.0 24.0 206 36-245 7-229 (400)
28 TIGR01900 dapE-gram_pos succin 100.0 8E-34 1.7E-38 256.2 20.3 196 43-246 1-220 (373)
29 PRK09104 hypothetical protein; 100.0 2.6E-33 5.6E-38 259.7 24.2 216 26-244 5-247 (464)
30 PRK04443 acetyl-lysine deacety 100.0 7.7E-33 1.7E-37 247.7 22.5 189 37-246 5-197 (348)
31 PRK13007 succinyl-diaminopimel 100.0 1.4E-32 3.1E-37 246.1 22.3 195 36-247 5-207 (352)
32 PRK08651 succinyl-diaminopimel 100.0 1.8E-32 3.8E-37 249.0 22.7 198 34-246 2-223 (394)
33 PRK07906 hypothetical protein; 100.0 1.4E-32 2.9E-37 252.3 21.2 201 41-244 2-227 (426)
34 PRK08652 acetylornithine deace 100.0 4.9E-32 1.1E-36 242.0 21.5 188 38-247 2-195 (347)
35 TIGR01886 dipeptidase dipeptid 100.0 3.1E-32 6.8E-37 252.3 20.7 205 29-240 4-287 (466)
36 PRK07318 dipeptidase PepV; Rev 100.0 3.2E-32 6.8E-37 252.5 20.7 209 28-243 4-291 (466)
37 PRK07205 hypothetical protein; 100.0 7.9E-32 1.7E-36 248.5 22.5 205 34-244 7-274 (444)
38 PRK13381 peptidase T; Provisio 100.0 1E-31 2.2E-36 245.0 21.0 199 40-248 3-251 (404)
39 PRK08737 acetylornithine deace 100.0 3.2E-31 6.9E-36 238.5 22.3 185 37-245 5-206 (364)
40 COG0624 ArgE Acetylornithine d 100.0 7.4E-31 1.6E-35 239.6 25.1 216 32-250 7-246 (409)
41 PRK05469 peptidase T; Provisio 100.0 2.6E-31 5.6E-36 242.6 20.7 201 38-247 2-252 (408)
42 PRK00466 acetyl-lysine deacety 100.0 5E-31 1.1E-35 235.8 22.1 183 37-245 9-196 (346)
43 PRK08262 hypothetical protein; 100.0 1.8E-31 4E-36 248.7 19.9 204 34-244 40-277 (486)
44 PRK07079 hypothetical protein; 100.0 1E-30 2.2E-35 242.6 23.4 213 24-243 5-246 (469)
45 TIGR01882 peptidase-T peptidas 100.0 4.4E-31 9.6E-36 241.2 17.1 197 38-243 3-250 (410)
46 PRK06156 hypothetical protein; 100.0 2.1E-30 4.5E-35 243.1 21.1 212 26-243 34-334 (520)
47 TIGR01883 PepT-like peptidase 100.0 2.9E-30 6.2E-35 232.0 20.7 192 40-243 2-209 (361)
48 TIGR01887 dipeptidaselike dipe 100.0 2.2E-29 4.9E-34 231.9 22.8 200 38-242 2-277 (447)
49 TIGR01902 dapE-lys-deAc N-acet 100.0 1.5E-28 3.2E-33 219.0 20.7 178 42-243 1-182 (336)
50 PRK15026 aminoacyl-histidine d 100.0 3.3E-28 7.2E-33 225.7 22.5 196 37-242 9-239 (485)
51 TIGR01893 aa-his-dipept aminoa 100.0 4.4E-28 9.5E-33 225.4 22.2 201 38-245 4-236 (477)
52 PRK12892 allantoate amidohydro 100.0 4.1E-28 8.8E-33 221.8 19.7 198 37-251 9-261 (412)
53 PRK09290 allantoate amidohydro 100.0 1.6E-27 3.4E-32 218.1 19.9 192 37-247 6-257 (413)
54 PRK12893 allantoate amidohydro 100.0 6.1E-27 1.3E-31 214.0 22.7 194 37-247 9-256 (412)
55 KOG2275 Aminoacylase ACY1 and 99.9 2.6E-26 5.6E-31 201.5 20.3 208 37-248 24-249 (420)
56 PRK12891 allantoate amidohydro 99.9 4E-26 8.7E-31 208.8 21.8 179 52-247 34-256 (414)
57 PRK12890 allantoate amidohydro 99.9 7.7E-26 1.7E-30 206.9 22.6 191 39-248 10-259 (414)
58 PRK08554 peptidase; Reviewed 99.9 5.9E-26 1.3E-30 208.8 20.7 195 39-244 2-236 (438)
59 TIGR01879 hydantase amidase, h 99.9 4.1E-24 8.8E-29 194.8 21.7 184 51-251 24-253 (401)
60 KOG2276 Metalloexopeptidases [ 99.9 4.3E-24 9.3E-29 186.2 18.0 216 26-244 4-253 (473)
61 PRK13799 unknown domain/N-carb 99.9 2.4E-23 5.2E-28 197.6 21.0 195 38-248 181-435 (591)
62 PRK13590 putative bifunctional 99.9 1E-21 2.3E-26 186.6 23.2 193 38-247 181-434 (591)
63 TIGR03176 AllC allantoate amid 99.9 1.7E-21 3.6E-26 177.8 22.1 179 53-247 28-250 (406)
64 COG4187 RocB Arginine degradat 99.8 1.9E-18 4.1E-23 152.5 15.5 203 37-242 7-261 (553)
65 PRK10199 alkaline phosphatase 99.7 1.7E-15 3.8E-20 133.5 14.8 123 46-173 43-188 (346)
66 TIGR03106 trio_M42_hydro hydro 99.6 3.1E-14 6.8E-19 126.7 15.1 129 38-167 3-223 (343)
67 PF01546 Peptidase_M20: Peptid 99.6 2.6E-15 5.6E-20 122.4 7.0 88 97-186 1-99 (189)
68 PRK09961 exoaminopeptidase; Pr 99.5 1.3E-12 2.9E-17 116.5 16.4 141 41-187 3-222 (344)
69 COG1363 FrvX Cellulase M and r 99.4 4.8E-12 1E-16 112.0 15.1 144 38-187 2-236 (355)
70 TIGR03107 glu_aminopep glutamy 99.4 1.1E-11 2.4E-16 110.6 15.6 141 42-188 2-235 (350)
71 COG2195 PepD Di- and tripeptid 99.4 1.3E-12 2.9E-17 118.0 9.6 198 37-243 4-254 (414)
72 PRK09864 putative peptidase; P 99.4 2E-11 4.3E-16 108.9 15.7 138 41-187 3-229 (356)
73 KOG2194 Aminopeptidases of the 98.6 3.2E-07 7E-12 88.4 11.6 135 38-187 57-225 (834)
74 PF07687 M20_dimer: Peptidase 98.5 1.8E-07 3.8E-12 69.6 5.5 45 203-247 2-46 (111)
75 PF04389 Peptidase_M28: Peptid 98.3 1.4E-06 3E-11 70.5 5.9 83 95-186 2-88 (179)
76 PF05343 Peptidase_M42: M42 gl 97.9 4.3E-05 9.2E-10 66.9 8.2 60 123-187 128-190 (292)
77 KOG3946 Glutaminyl cyclase [Po 97.4 0.0028 6E-08 54.2 11.0 125 38-173 51-200 (338)
78 KOG2526 Predicted aminopeptida 97.3 0.0046 9.9E-08 55.8 12.2 115 62-187 165-305 (555)
79 COG2234 Iap Predicted aminopep 97.0 0.0022 4.7E-08 59.2 7.7 64 94-174 209-274 (435)
80 KOG2195 Transferrin receptor a 97.0 0.003 6.6E-08 61.2 8.1 77 81-173 338-420 (702)
81 PF05450 Nicastrin: Nicastrin; 95.6 0.059 1.3E-06 45.6 7.6 69 94-173 1-74 (234)
82 PF00883 Peptidase_M17: Cytoso 93.2 1.6 3.5E-05 38.5 11.2 109 42-162 2-140 (311)
83 cd00433 Peptidase_M17 Cytosol 93.1 3.8 8.1E-05 38.4 14.1 122 37-162 153-295 (468)
84 PRK00913 multifunctional amino 92.1 3.2 6.9E-05 39.0 12.2 121 38-162 171-309 (483)
85 KOG2597 Predicted aminopeptida 90.4 4.3 9.3E-05 38.1 11.1 125 37-163 188-331 (513)
86 PRK05015 aminopeptidase B; Pro 89.0 19 0.00041 33.2 14.5 117 39-163 101-247 (424)
87 PTZ00412 leucyl aminopeptidase 88.9 12 0.00025 35.8 12.8 119 38-162 212-354 (569)
88 COG0260 PepB Leucyl aminopepti 80.3 37 0.00079 32.1 12.0 120 38-162 167-308 (485)
89 COG4882 Predicted aminopeptida 77.0 55 0.0012 29.7 11.3 70 83-173 180-259 (486)
90 PRK02256 putative aminopeptida 62.7 15 0.00033 34.4 5.1 41 120-164 251-293 (462)
91 PF06675 DUF1177: Protein of u 61.9 1E+02 0.0022 26.4 9.7 87 91-187 29-130 (276)
92 PF04114 Gaa1: Gaa1-like, GPI 47.2 88 0.0019 29.7 7.6 72 81-173 3-77 (504)
93 KOG3566 Glycosylphosphatidylin 40.7 1.7E+02 0.0036 28.3 8.1 90 62-173 92-193 (617)
94 COG4635 HemG Flavodoxin [Energ 34.9 26 0.00056 27.9 1.7 33 47-79 4-36 (175)
95 COG2195 PepD Di- and tripeptid 31.9 58 0.0013 30.1 3.7 64 94-164 62-134 (414)
96 PF01221 Dynein_light: Dynein 31.5 1.1E+02 0.0024 21.4 4.4 18 56-73 34-52 (89)
97 PRK02813 putative aminopeptida 30.8 62 0.0014 30.0 3.8 20 150-169 252-275 (428)
98 PRK04330 hypothetical protein; 30.0 1.7E+02 0.0038 20.7 5.0 39 36-74 10-48 (88)
99 PF14133 DUF4300: Domain of un 29.6 2.9E+02 0.0063 23.7 7.3 62 44-107 132-194 (250)
100 COG3149 PulM Type II secretory 28.5 3.2E+02 0.0068 22.0 6.8 30 51-80 95-124 (181)
101 PRK02813 putative aminopeptida 26.1 2.5E+02 0.0054 26.1 6.8 51 56-106 20-89 (428)
102 PRK02256 putative aminopeptida 25.2 4.4E+02 0.0096 24.8 8.3 50 57-106 41-106 (462)
103 KOG3430 Dynein light chain typ 25.2 1.9E+02 0.004 20.6 4.4 38 37-76 18-56 (90)
104 PF09940 DUF2172: Domain of un 25.0 2.6E+02 0.0056 25.6 6.4 63 89-173 125-187 (386)
105 PF11336 DUF3138: Protein of u 23.7 2.2E+02 0.0047 26.5 5.7 34 20-53 21-54 (514)
106 PTZ00371 aspartyl aminopeptida 22.9 3.3E+02 0.0071 25.6 7.0 50 56-105 21-90 (465)
107 TIGR01753 flav_short flavodoxi 22.6 1.1E+02 0.0023 22.8 3.2 27 51-77 6-32 (140)
108 COG1698 Uncharacterized protei 22.1 3E+02 0.0065 19.6 5.1 41 35-75 13-53 (93)
109 PF12685 SpoIIIAH: SpoIIIAH-li 22.0 3.4E+02 0.0074 22.0 6.3 40 35-74 97-150 (196)
110 PF03685 UPF0147: Uncharacteri 20.6 2.1E+02 0.0045 20.2 3.9 40 35-74 6-45 (85)
No 1
>PLN02693 IAA-amino acid hydrolase
Probab=100.00 E-value=2e-44 Score=330.65 Aligned_cols=254 Identities=54% Similarity=0.864 Sum_probs=213.0
Q ss_pred HHHHhcceee-ccCCccchHHHHHHHHHHHh--hHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhCCCCeEeecCCc
Q 024905 6 LLLLLPITYL-TTTTAVDEILTNQVMISAQQ--DKDWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKT 82 (260)
Q Consensus 6 ~~~~~~~~~~-~~~~~~~~~~~~~i~~~i~~--~~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~ 82 (260)
++++|+.+.+ +|-.-.-+..+.++.+..++ ..+++++++++|+++||+|++|.++++||.++|+++|++++....++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lh~~PE~s~~E~~ta~~i~~~L~~~G~~~~~~~~~~ 91 (437)
T PLN02693 12 LLLLLRVSSESPWIAGDVSQIQINLLELAKSPEVFDWMVRIRRKIHENPELGYEEFETSKLIRSELDLIGIKYRYPVAIT 91 (437)
T ss_pred HHHHHHhccCCCccccchhhhHHHHHHHhhhhhhHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHCCCeeEecCCCc
Confidence 4444555543 23221123344445544444 55789999999999999999999999999999999999987545689
Q ss_pred eEEEEEcCCCCcEEEEEeccCCCCCCCCCCCccccccCCccccCCCcHHHHHHHHHHHHHHhccCCCCceEEEEeecCCC
Q 024905 83 GIVAQIGSGSRPVVVLRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEE 162 (260)
Q Consensus 83 nlia~~~~~~~~~i~l~~H~DtVp~~~~~~w~~~~~~~g~~~g~G~kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE 162 (260)
|++|+++++++|+|+|+||+||||+++..+|++++..+|++||||||++++++++|+++|++.+..++++|.|+|++|||
T Consensus 92 ~via~~g~~~g~~i~l~~h~DaVp~~e~~~~~~~p~~~G~~hacGhkg~~A~~l~Aa~~L~~~~~~~~g~V~~if~pdEE 171 (437)
T PLN02693 92 GIIGYIGTGEPPFVALRADMDALPIQEAVEWEHKSKIPGKMHACGHDGHVAMLLGAAKILQEHRHHLQGTVVLIFQPAEE 171 (437)
T ss_pred EEEEEECCCCCCEEEEEeecCCCcCCCCCCCCCCCCCCCCEECCcchHHHHHHHHHHHHHHhCcccCCceEEEEEEEccc
Confidence 99999964556999999999999998888899999889999999999999999999999998876778999999999999
Q ss_pred CCCChHHHHHcCCCCCCceEEEecccCCCCCcceEeecccccceeeEEEEEEEccCCCcCCCCCCcCHHHHHHHHHHHHH
Q 024905 163 GGAGAFHMIKEGALGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQ 242 (260)
Q Consensus 163 ~g~G~~~~~~~g~~~~~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~ 242 (260)
++.|++.++++|.+++.|+++++|.++..+.|.+..+.|..++|..+++|+++|+++|++.|+.|+|||..+++++..|+
T Consensus 172 ~~~Ga~~~i~~g~~~~~~~iig~h~~p~~~~g~~~~~~g~~~~G~~~~~i~v~Gk~aHaa~P~~G~nAI~~aa~~i~~l~ 251 (437)
T PLN02693 172 GLSGAKKMREEGALKNVEAIFGIHLSPRTPFGKAASRAGSFMAGAGVFEAVITGKGGHAAIPQHTIDPVVAASSIVLSLQ 251 (437)
T ss_pred chhhHHHHHHCCCCCCCCEEEEEecCCCCCCeeEEeccCcccccceEEEEEEEcccccCCCCCCCcCHHHHHHHHHHHHH
Confidence 66899999999987767899988887777778776666777889999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCcceee
Q 024905 243 QLISREADPLQSLRGNC 259 (260)
Q Consensus 243 ~~~~~~~~p~~~~~~~~ 259 (260)
++..+..+|+.+.++++
T Consensus 252 ~~~~~~~~~~~~~ti~v 268 (437)
T PLN02693 252 QLVSRETDPLDSKVVTV 268 (437)
T ss_pred HHhcccCCCCCCcEEEE
Confidence 99877777776666554
No 2
>PLN02280 IAA-amino acid hydrolase
Probab=100.00 E-value=2.7e-42 Score=318.89 Aligned_cols=228 Identities=57% Similarity=0.906 Sum_probs=202.7
Q ss_pred HHHhhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhCCCCeEeecCCceEEEEEcCCCCcEEEEEeccCCCCCCCCC
Q 024905 32 SAQQDKDWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVVLRADMDALPLQELV 111 (260)
Q Consensus 32 ~i~~~~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nlia~~~~~~~~~i~l~~H~DtVp~~~~~ 111 (260)
..++..+.++++.++++++|+++++|.++++||.++|+++|+++++....+|++++++++++|+|+|+||+||||+++..
T Consensus 91 ~~~~~~~~l~~l~r~lh~~PEls~~E~~t~~~i~~~L~~~G~~~~~~~~~~~vva~~g~~~~~~I~l~gh~DaVP~~e~~ 170 (478)
T PLN02280 91 YQPDTVAWLKSVRRKIHENPELAFEEYKTSELVRSELDRMGIMYRYPLAKTGIRAWIGTGGPPFVAVRADMDALPIQEAV 170 (478)
T ss_pred hhHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHCCCeEEecCCCCEEEEEECCCCCCEEEEEEecCCCcccCCC
Confidence 34555678889999999999999999999999999999999998875668899999954445899999999999998888
Q ss_pred CCccccccCCccccCCCcHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCCCChHHHHHcCCCCCCceEEEecccCCC
Q 024905 112 EWEHKSKIDGKMHACGHDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGGAGAFHMIKEGALGDSEAIFGMHIDVGI 191 (260)
Q Consensus 112 ~w~~~~~~~g~~~g~G~kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g~G~~~~~~~g~~~~~d~~i~~~~~~~~ 191 (260)
+|+++++++|++||||||++++++++++++|++.+.+++++|.|+|++|||.|.|+++|+++|.++++|+++++|+.+.+
T Consensus 171 ~w~~~p~~~G~~h~cGhd~~~A~~l~a~~~L~~~~~~~~g~V~~if~pdEE~g~Ga~~li~~g~~~~~d~~~~~h~~~~~ 250 (478)
T PLN02280 171 EWEHKSKVAGKMHACGHDAHVAMLLGAAKILKSREHLLKGTVVLLFQPAEEAGNGAKRMIGDGALDDVEAIFAVHVSHEH 250 (478)
T ss_pred CCCCCCCCCCeEEeCCCcHHHHHHHHHHHHHHhccccCCceEEEEecccccccchHHHHHHCCCCcCCCEEEEEecCCCC
Confidence 89999999999999999999999999999998877778999999999999998899999999988888999999987667
Q ss_pred CCcceEeecccccceeeEEEEEEEccCCCcCCCCCCcCHHHHHHHHHHHHHHHHhhcCCCCCCcceee
Q 024905 192 PTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADPLQSLRGNC 259 (260)
Q Consensus 192 ~~~~~~~~~g~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~p~~~~~~~~ 259 (260)
|++.+....+..++|..+++|+++|+++|++.|+.|+|||..+++++..++++..+..+|..+.++++
T Consensus 251 p~g~ig~~~~~~~~G~~~~~I~v~Gk~aHas~P~~G~NAI~~aa~li~~l~~l~~r~~~~~~~~tvnv 318 (478)
T PLN02280 251 PTAVIGSRPGPLLAGCGFFRAVISGKKGRAGSPHHSVDLILAASAAVISLQGIVSREANPLDSQVVSV 318 (478)
T ss_pred CCceeEecccccccceeEEEEEEECcchhcCCcccCcCHHHHHHHHHHHHHHHHhcccCCCCCcEEEE
Confidence 88776666667778999999999999999999999999999999999999999877667765555543
No 3
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=100.00 E-value=1.2e-39 Score=292.11 Aligned_cols=230 Identities=47% Similarity=0.752 Sum_probs=212.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhCCCCeEeecC-CceEEEEEcCC-CCcEEEEEeccCCCC
Q 024905 29 VMISAQQDKDWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVA-KTGIVAQIGSG-SRPVVVLRADMDALP 106 (260)
Q Consensus 29 i~~~i~~~~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~-~~nlia~~~~~-~~~~i~l~~H~DtVp 106 (260)
+.+.+ ...++++++.|+|+++|+++++|.++++||.++|+++||++..... .+.++|.++++ ++|+|.|.+.||.+|
T Consensus 4 ~~~~~-~~~~~l~~~rr~lH~~PEL~f~E~~Ta~~i~~~L~~~g~~~~~~~~~~TGvva~~~~g~~g~tIalRAD~DALP 82 (392)
T COG1473 4 ILDEI-ELKDELIEWRRDLHEHPELGFEEYRTAAYIAEKLEELGFEVVEVGGGKTGVVATLKGGKPGPTIALRADMDALP 82 (392)
T ss_pred HHHHH-hhhHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHcCCeeEeccCCceEEEEEEcCCCCCCEEEEEeecccCc
Confidence 34444 6778999999999999999999999999999999999999443333 68999999865 568999999999999
Q ss_pred CCCCCCCccccccCCccccCCCcHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCCCChHHHHHcCCCCC-CceEEEe
Q 024905 107 LQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGGAGAFHMIKEGALGD-SEAIFGM 185 (260)
Q Consensus 107 ~~~~~~w~~~~~~~g~~~g~G~kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g~G~~~~~~~g~~~~-~d~~i~~ 185 (260)
..+.+.++|.+..+|++|+|||++..+++|+++++|++...+++++|+|+|+|.||++.|++.|+++|.+++ +|+++.+
T Consensus 83 i~E~t~~~~~S~~~G~mHACGHD~Hta~lLgaA~~L~~~~~~~~Gtv~~ifQPAEE~~~Ga~~mi~~G~~~~~vD~v~g~ 162 (392)
T COG1473 83 IQEETGLPFASKNPGVMHACGHDGHTAILLGAALALAEHKDNLPGTVRLIFQPAEEGGGGAKAMIEDGVFDDFVDAVFGL 162 (392)
T ss_pred cccccCCCcccCCCCCcccCCchHHHHHHHHHHHHHHhhhhhCCcEEEEEecccccccccHHHHHhcCCccccccEEEEe
Confidence 989899999999999999999999999999999999998778999999999999999889999999999988 9999999
Q ss_pred cccCCCCCcceEeecccccceeeEEEEEEEccCCCcCCCCCCcCHHHHHHHHHHHHHHHHhhcCCCCCCcceee
Q 024905 186 HIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADPLQSLRGNC 259 (260)
Q Consensus 186 ~~~~~~~~~~~~~~~g~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~p~~~~~~~~ 259 (260)
|+.|+.|.|.+.++.|..+.+...|+++++|+++|++.|+.++||+..++.++..|+.+++|..+|..+.|++.
T Consensus 163 H~~p~~~~g~v~~~~G~~~aa~d~~~i~~~GkggH~a~Ph~~~d~i~aa~~~v~~lq~ivsr~~~p~~~~vv~v 236 (392)
T COG1473 163 HPGPGLPVGTVALRPGALMAAADEFEITFKGKGGHAAAPHLGIDALVAAAQLVTALQTIVSRNVDPLDSAVVTV 236 (392)
T ss_pred cCCCCCCCceEEeecccceeecceEEEEEEeCCcccCCcccccCHHHHHHHHHHHHHHHHhcccCCccCeEEEE
Confidence 99887789999888888888999999999999999999999999999999999999999999999999988875
No 4
>PRK06915 acetylornithine deacetylase; Validated
Probab=100.00 E-value=4e-39 Score=295.19 Aligned_cols=214 Identities=21% Similarity=0.283 Sum_probs=185.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhCCCCeEee--------------------cCCce
Q 024905 24 ILTNQVMISAQQDKDWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYP--------------------VAKTG 83 (260)
Q Consensus 24 ~~~~~i~~~i~~~~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~--------------------~~~~n 83 (260)
.|++++.++++++++++++++++|++|||+|++|.++++||+++|+++|+++++. +.++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~lv~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 82 (422)
T PRK06915 3 QLKKQICDYIESHEEEAVKLLKRLIQEKSVSGDESGAQAIVIEKLRELGLDLDIWEPSFKKLKDHPYFVSPRTSFSDSPN 82 (422)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhcCCeeEEeecchhhhhcccccCCcccccCCCce
Confidence 4688999999999999999999999999999999999999999999999987531 24699
Q ss_pred EEEEEcCC-CCcEEEEEeccCCCCCCCCCCCc---ccc-ccCCccccCCC---cHHHHHHHHHHHHHHhccCCCCceEEE
Q 024905 84 IVAQIGSG-SRPVVVLRADMDALPLQELVEWE---HKS-KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRI 155 (260)
Q Consensus 84 lia~~~~~-~~~~i~l~~H~DtVp~~~~~~w~---~~~-~~~g~~~g~G~---kg~~a~~l~a~~~L~~~~~~~~~~i~~ 155 (260)
+++++++. ++|+|+|+|||||||+++...|+ |.+ ++||++||||+ ||++++++.|+++|++.+.+++++|.|
T Consensus 83 lia~~~g~~~~~~l~l~~H~Dtvp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~v~~ 162 (422)
T PRK06915 83 IVATLKGSGGGKSMILNGHIDVVPEGDVNQWDHHPYSGEVIGGRIYGRGTTDMKGGNVALLLAMEALIESGIELKGDVIF 162 (422)
T ss_pred EEEEEcCCCCCCeEEEEeeccccCCCCcccCcCCCCCceEECCEEEecCcccchHHHHHHHHHHHHHHHcCCCCCCcEEE
Confidence 99999754 56899999999999998888894 544 47999999985 899999999999999887778899999
Q ss_pred EeecCCCCC-CChHHHHHcCCCCCCceEEEecccCCCCCcceEeecccccceeeEEEEEEEccCCCcCCCCCCcCHHHHH
Q 024905 156 LFQPAEEGG-AGAFHMIKEGALGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTA 234 (260)
Q Consensus 156 ~~~~dEE~g-~G~~~~~~~g~~~~~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~ 234 (260)
++++|||.| .|+..++.+++ +.|++++. +|++.. ...+++|..+++|+++|+++|+|.|+.|+|||..+
T Consensus 163 ~~~~dEE~g~~G~~~~~~~~~--~~d~~i~~-----ep~~~~---i~~~~~G~~~~~i~v~G~~~H~s~p~~g~nAi~~~ 232 (422)
T PRK06915 163 QSVIEEESGGAGTLAAILRGY--KADGAIIP-----EPTNMK---FFPKQQGSMWFRLHVKGKAAHGGTRYEGVSAIEKS 232 (422)
T ss_pred EEecccccCCcchHHHHhcCc--CCCEEEEC-----CCCCcc---ceeecccEEEEEEEEEeeccccCCCCcCcCHHHHH
Confidence 999999976 68888888764 46888873 455532 22458999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 024905 235 SSVILALQQLISR 247 (260)
Q Consensus 235 ~~~i~~l~~~~~~ 247 (260)
++++..|+++..+
T Consensus 233 ~~~~~~l~~l~~~ 245 (422)
T PRK06915 233 MFVIDHLRKLEEK 245 (422)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988753
No 5
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=100.00 E-value=2.3e-39 Score=291.35 Aligned_cols=212 Identities=51% Similarity=0.831 Sum_probs=183.5
Q ss_pred HHHHHHHHhCCCCCcchHHHHHHHHHHHHhCCCCeEe-ecCCceEEEEEcCC-CCcEEEEEeccCCCCCCCCCCCccccc
Q 024905 41 VSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAY-PVAKTGIVAQIGSG-SRPVVVLRADMDALPLQELVEWEHKSK 118 (260)
Q Consensus 41 ~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~-~~~~~nlia~~~~~-~~~~i~l~~H~DtVp~~~~~~w~~~~~ 118 (260)
.+++++|++|||+|++|.++++||.++|+++|+++++ ....+|++++++++ ++|+|+|+||+||||+++...+||...
T Consensus 2 ~~~~~~L~~ips~s~~E~~~a~~l~~~l~~~g~~~~~~~~~~~~vva~~~~~~~~~~i~l~gH~DtVp~~~~~~~pf~~~ 81 (363)
T TIGR01891 2 TDIRRHLHEHPELSFEEFKTSSLIAEALESLGIEVRRGVGGATGVVATIGGGKPGPVVALRADMDALPIQEQTDLPYKST 81 (363)
T ss_pred hHHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCceEecCCCCcEEEEEEeCCCCCCEEEEEeccCCCCcccccCCCcccC
Confidence 5789999999999999999999999999999999876 34578999999764 468999999999999876555678766
Q ss_pred cCCccccCCCcHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCCCChHHHHHcCCCCCCceEEEecccCCCCCcceEe
Q 024905 119 IDGKMHACGHDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGGAGAFHMIKEGALGDSEAIFGMHIDVGIPTGSIAS 198 (260)
Q Consensus 119 ~~g~~~g~G~kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g~G~~~~~~~g~~~~~d~~i~~~~~~~~~~~~~~~ 198 (260)
+||++||||++++++++++|++.|++.+..++++|.|+|++|||.+.|++++++++.+++.|++++.++.++.+.+.+..
T Consensus 82 ~~g~l~g~G~~~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~G~~~~~~~~~~~~~d~~i~~e~~~~~~~~~~~~ 161 (363)
T TIGR01891 82 NPGVMHACGHDLHTAILLGTAKLLKKLADLLEGTVRLIFQPAEEGGGGATKMIEDGVLDDVDAILGLHPDPSIPAGTVGL 161 (363)
T ss_pred CCCceecCcCHHHHHHHHHHHHHHHhchhhCCceEEEEEeecCcCcchHHHHHHCCCCCCcCEEEEECCCCCCCCeEEEE
Confidence 78999999999999999999999988766678999999999999888999999888777789999988766666666555
Q ss_pred ecccccceeeEEEEEEEccCCCcCCCCCCcCHHHHHHHHHHHHHHHHhhcCCCC
Q 024905 199 ISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADPL 252 (260)
Q Consensus 199 ~~g~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~p~ 252 (260)
..+..++|..+++++++|+++|++.|+.|+||+..+++++.+++++..+..++.
T Consensus 162 ~~~~~~~g~~~~~i~~~G~~~Has~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~ 215 (363)
T TIGR01891 162 RPGTIMAAADKFEVTIHGKGAHAARPHLGRDALDAAAQLVVALQQIVSRNVDPS 215 (363)
T ss_pred CCCcceeecceEEEEEEeecccccCcccccCHHHHHHHHHHHHHHHhhccCCCC
Confidence 556678899999999999999999999999999999999999998765433343
No 6
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=3e-37 Score=278.80 Aligned_cols=201 Identities=22% Similarity=0.315 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhCCCCeEee---cCCceEEEEEcCCCCcEEEEEeccCCCCCCCCCCCc
Q 024905 38 DWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYP---VAKTGIVAQIGSGSRPVVVLRADMDALPLQELVEWE 114 (260)
Q Consensus 38 ~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~---~~~~nlia~~~~~~~~~i~l~~H~DtVp~~~~~~w~ 114 (260)
+++++++++|++|||+|++|.++++||.++|+++|++++.. ++++|++++++++ .|+|+|+||+||||+++...|.
T Consensus 2 ~~~~~~l~~Lv~i~s~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~l~a~~g~~-~~~il~~~H~DtVp~~~~~~w~ 80 (377)
T PRK08588 2 EEKIQILADIVKINSVNDNEIEVANYLQDLFAKHGIESKIVKVNDGRANLVAEIGSG-SPVLALSGHMDVVAAGDVDKWT 80 (377)
T ss_pred hHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHCCCceEEEecCCCCceEEEEeCCC-CceEEEEeeecccCCCCcccCc
Confidence 56789999999999999999999999999999999998653 3578999999544 4899999999999998777895
Q ss_pred ccc----ccCCccccCCC---cHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC-CChHHHHHcCCCCCCceEEEec
Q 024905 115 HKS----KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEGALGDSEAIFGMH 186 (260)
Q Consensus 115 ~~~----~~~g~~~g~G~---kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g-~G~~~~~~~g~~~~~d~~i~~~ 186 (260)
++| ++||++||||+ |+++++++.|+++|++.+..++++|.|+|++|||.| .|+++++++++++++|++++.+
T Consensus 81 ~~Pf~~~~~~g~l~GrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~i~l~~~~dEE~g~~G~~~~~~~~~~~~~d~~i~~e 160 (377)
T PRK08588 81 YDPFELTEKDGKLYGRGATDMKSGLAALVIAMIELKEQGQLLNGTIRLLATAGEEVGELGAKQLTEKGYADDLDALIIGE 160 (377)
T ss_pred CCCCCeEEECCEEEecCcccccchHHHHHHHHHHHHHcCCCCCCcEEEEEEcccccCchhHHHHHhcCccCCCCEEEEec
Confidence 443 57999999985 899999999999999888778899999999999987 7999999998777788888743
Q ss_pred ccCCCCCcceEeecccccceeeEEEEEEEccCCCcCCCCCCcCHHHHHHHHHHHHHHHHhh
Q 024905 187 IDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISR 247 (260)
Q Consensus 187 ~~~~~~~~~~~~~~g~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~ 247 (260)
|++.. + ..+++|..+++|+++|+++|+|.|+.|+|||..+++++.+++++..+
T Consensus 161 -----p~~~~-i--~~~~~G~~~~~i~~~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~~~~ 213 (377)
T PRK08588 161 -----PSGHG-I--VYAHKGSMDYKVTSTGKAAHSSMPELGVNAIDPLLEFYNEQKEYFDS 213 (377)
T ss_pred -----CCCce-e--EEEEEEEEEEEEEEEeechhccCCccccCHHHHHHHHHHHHHHHhhh
Confidence 33221 1 13478999999999999999999999999999999999999987644
No 7
>PRK06837 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=5.2e-37 Score=281.67 Aligned_cols=216 Identities=19% Similarity=0.206 Sum_probs=185.1
Q ss_pred cchHHHHHHHHHHHhhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhCCCCeEee--------------------cC
Q 024905 21 VDEILTNQVMISAQQDKDWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYP--------------------VA 80 (260)
Q Consensus 21 ~~~~~~~~i~~~i~~~~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~--------------------~~ 80 (260)
.+..+.+++.+++++.++++++++++|++|||+|++|.++++||.++|+++|++++.. ++
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~l~~li~ipS~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (427)
T PRK06837 3 LTPDLTQRILAAVDAGFDAQVAFTQDLVRFPSTRGAEAPCQDFLARAFRERGYEVDRWSIDPDDLKSHPGAGPVEIDYSG 82 (427)
T ss_pred CchHHHHHHHHHHHhhhHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHCCCceEEecCCHHHhhhcccccccccccCC
Confidence 3567888999999999999999999999999999999999999999999999987541 25
Q ss_pred CceEEEEEcCC--CCcEEEEEeccCCCCCCCCCCCccc---c-ccCCccccCCC---cHHHHHHHHHHHHHHhccCCCCc
Q 024905 81 KTGIVAQIGSG--SRPVVVLRADMDALPLQELVEWEHK---S-KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKG 151 (260)
Q Consensus 81 ~~nlia~~~~~--~~~~i~l~~H~DtVp~~~~~~w~~~---~-~~~g~~~g~G~---kg~~a~~l~a~~~L~~~~~~~~~ 151 (260)
++|+++++++. .+|+|+|+||+||||+++.+.|..+ + +++|++||||+ ||++++++.|+++|++.+..+++
T Consensus 83 ~~nl~a~~~g~~~~~~~il~~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~~a~l~a~~~l~~~~~~~~~ 162 (427)
T PRK06837 83 APNVVGTYRPAGKTGRSLILQGHIDVVPEGPLDLWSRPPFDPVIVDGWMYGRGAADMKAGLAAMLFALDALRAAGLAPAA 162 (427)
T ss_pred CceEEEEecCCCCCCCeEEEEeecccCCCCCccccccCCCCcEEECCEEEecCcccchHHHHHHHHHHHHHHHcCCCCCC
Confidence 78999999753 3689999999999999877778544 3 57999999985 89999999999999988877899
Q ss_pred eEEEEeecCCCCC-CChHHHHHcCCCCCCceEEEecccCCCCCcceEeecccccceeeEEEEEEEccCCCcCCCCCCcCH
Q 024905 152 TVRILFQPAEEGG-AGAFHMIKEGALGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDP 230 (260)
Q Consensus 152 ~i~~~~~~dEE~g-~G~~~~~~~g~~~~~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~v~G~~~Hs~~p~~g~nA 230 (260)
+|.|+|++|||.+ .|+..++..++ ..|++++. +|++.. ...+++|..+++|+++|+++|+|.|+.|+||
T Consensus 163 ~i~~~~~~dEE~~g~g~~~~~~~~~--~~d~~iv~-----ep~~~~---i~~~~~G~~~~~i~v~G~~~Hs~~p~~g~nA 232 (427)
T PRK06837 163 RVHFQSVIEEESTGNGALSTLQRGY--RADACLIP-----EPTGEK---LVRAQVGVIWFRLRVRGAPVHVREAGTGANA 232 (427)
T ss_pred cEEEEEEeccccCCHhHHHHHhcCc--CCCEEEEc-----CCCCCc---cccccceeEEEEEEEEeeccccCCcccCcCH
Confidence 9999999999965 78888887764 46888874 344331 2234789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 024905 231 ILTASSVILALQQLIS 246 (260)
Q Consensus 231 i~~~~~~i~~l~~~~~ 246 (260)
+..+++++..|+++..
T Consensus 233 i~~~~~~i~~l~~~~~ 248 (427)
T PRK06837 233 IDAAYHLIQALRELEA 248 (427)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988764
No 8
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=6.1e-37 Score=281.11 Aligned_cols=209 Identities=16% Similarity=0.197 Sum_probs=174.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhCCCCC--c-chHHHHHHHHHHHHhCCCCeEeec-----------CCceEEEEEcCC-C
Q 024905 28 QVMISAQQDKDWLVSVRRQIHENPELL--F-EEHNTSALIRRELDKLGIPYAYPV-----------AKTGIVAQIGSG-S 92 (260)
Q Consensus 28 ~i~~~i~~~~~~~~~~~~~l~~ips~s--~-~e~~~~~~l~~~l~~~G~~~~~~~-----------~~~nlia~~~~~-~ 92 (260)
++.++++++++++++++++|++|||++ + +|.++++||.++|+++||+++... .++|++++++++ +
T Consensus 4 ~~~~~~~~~~~~~~~~l~~Lv~i~S~~~~g~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~nlia~~~g~~~ 83 (427)
T PRK13013 4 RLFAAIEARRDDLVALTQDLIRIPTLNPPGRAYREICEFLAARLAPRGFEVELIRAEGAPGDSETYPRWNLVARRQGARD 83 (427)
T ss_pred HHHHHHHHhHHHHHHHHHHHhcCCCcCCCCccHHHHHHHHHHHHHHCCCceEEEecCCCCcccccCCcceEEEEecCCCC
Confidence 577788888899999999999999987 3 568999999999999999987531 156999999654 4
Q ss_pred CcEEEEEeccCCCCCCCCCCC---cccc-ccCCccccCC---CcHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC-
Q 024905 93 RPVVVLRADMDALPLQELVEW---EHKS-KIDGKMHACG---HDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG- 164 (260)
Q Consensus 93 ~~~i~l~~H~DtVp~~~~~~w---~~~~-~~~g~~~g~G---~kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g- 164 (260)
+|+|+|+||+||||+++ .| ||.+ ++||++|||| ||++++++++|+++|++.+..++++|.|+|++|||.|
T Consensus 84 ~~~i~l~gH~DvVp~~~--~W~~~Pf~~~~~dg~iyGrGa~D~Kg~~aa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~ 161 (427)
T PRK13013 84 GDCVHFNSHHDVVEVGH--GWTRDPFGGEVKDGRIYGRGACDMKGGLAASIIAAEAFLAVYPDFAGSIEISGTADEESGG 161 (427)
T ss_pred CCEEEEEeccccCCCCC--CCcCCCCCceEECCEEEeccccccchHHHHHHHHHHHHHHhCCCCCccEEEEEEeccccCC
Confidence 68999999999999864 46 4553 5799999987 4999999999999999887778899999999999976
Q ss_pred -CChHHHHHcCCCC--CCceEEEecccCCCCCcceEeecccccceeeEEEEEEEccCCCcCCCCCCcCHHHHHHHHHHHH
Q 024905 165 -AGAFHMIKEGALG--DSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILAL 241 (260)
Q Consensus 165 -~G~~~~~~~g~~~--~~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l 241 (260)
.|.+++++++.++ ++|++++.+ |++...+ ..+++|..+++|+++|+++|++.|+.|+|||..+++++.+|
T Consensus 162 ~~g~~~l~~~~~~~~~~~d~~i~~e-----p~~~~~i--~~~~~G~~~~~i~v~G~~~H~~~p~~g~nai~~~~~~l~~l 234 (427)
T PRK13013 162 FGGVAYLAEQGRFSPDRVQHVIIPE-----PLNKDRI--CLGHRGVWWAEVETRGRIAHGSMPFLGDSAIRHMGAVLAEI 234 (427)
T ss_pred hhHHHHHHhcCCccccCCCEEEEec-----CCCCCce--EEeeeeEEEEEEEEEccccccCCCCcCcCHHHHHHHHHHHH
Confidence 4778888887655 468888753 3332112 23478999999999999999999999999999999999999
Q ss_pred HHHH
Q 024905 242 QQLI 245 (260)
Q Consensus 242 ~~~~ 245 (260)
+++.
T Consensus 235 ~~~~ 238 (427)
T PRK13013 235 EERL 238 (427)
T ss_pred HHHh
Confidence 8754
No 9
>PRK13004 peptidase; Reviewed
Probab=100.00 E-value=1.9e-36 Score=275.60 Aligned_cols=210 Identities=17% Similarity=0.227 Sum_probs=180.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhCCCCeEeecCCceEEEEEcCCCCcEEEEEeccCCCC
Q 024905 27 NQVMISAQQDKDWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVVLRADMDALP 106 (260)
Q Consensus 27 ~~i~~~i~~~~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nlia~~~~~~~~~i~l~~H~DtVp 106 (260)
+.+.++++++++++++++++|++|||+|++|.+++++|.++|+++||++...+..+|+++++++++ |+|+|++|+||||
T Consensus 4 ~~~~~~~~~~~~~~~~~l~~lv~ips~s~~e~~~a~~l~~~l~~~G~~~~~~~~~~n~~a~~~~~~-~~i~~~~H~DtVp 82 (399)
T PRK13004 4 KLILMLAEKYKADMTRFLRDLIRIPSESGDEKRVVKRIKEEMEKVGFDKVEIDPMGNVLGYIGHGK-KLIAFDAHIDTVG 82 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCcEEEEcCCCeEEEEECCCC-cEEEEEeccCccC
Confidence 577888999999999999999999999999999999999999999998655456789999986554 8999999999999
Q ss_pred CCCCCCCcccc----ccCCccccCCC---cHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC--CChHHHHHcCCCC
Q 024905 107 LQELVEWEHKS----KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG--AGAFHMIKEGALG 177 (260)
Q Consensus 107 ~~~~~~w~~~~----~~~g~~~g~G~---kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g--~G~~~~~~~g~~~ 177 (260)
+++...|.++| ++||++||||+ |++++++++|+++|++.+..++++|.++|++|||.+ .|++++++++.+
T Consensus 83 ~~~~~~w~~~P~~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~i~~~~~~~EE~~~g~~~~~~~~~~~~- 161 (399)
T PRK13004 83 IGDIKNWDFDPFEGEEDDGRIYGRGTSDQKGGMASMVYAAKIIKDLGLDDEYTLYVTGTVQEEDCDGLCWRYIIEEDKI- 161 (399)
T ss_pred CCChhhcccCCCccEEECCEEEeCCccccchHHHHHHHHHHHHHhcCCCCCCeEEEEEEcccccCcchhHHHHHHhcCC-
Confidence 98777887553 46899999985 899999999999999988778999999999999963 567888876544
Q ss_pred CCceEEEecccCCCCCc-ceEeecccccceeeEEEEEEEccCCCcCCCCCCcCHHHHHHHHHHHHHHHHhh
Q 024905 178 DSEAIFGMHIDVGIPTG-SIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISR 247 (260)
Q Consensus 178 ~~d~~i~~~~~~~~~~~-~~~~~~g~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~ 247 (260)
++|++++.++ ++ .+. .+++|..+++|+++|+++|++.|+.|+|||..+++++..|+++...
T Consensus 162 ~~d~~i~~e~-----~~~~i~----~~~~G~~~~~v~v~G~~~Ha~~p~~g~nAi~~~~~~i~~l~~~~~~ 223 (399)
T PRK13004 162 KPDFVVITEP-----TDLNIY----RGQRGRMEIRVETKGVSCHGSAPERGDNAIYKMAPILNELEELNPN 223 (399)
T ss_pred CCCEEEEccC-----CCCceE----EecceEEEEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHhhccc
Confidence 4789998543 22 222 3478999999999999999999999999999999999999887653
No 10
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=100.00 E-value=2.9e-36 Score=274.14 Aligned_cols=211 Identities=18% Similarity=0.212 Sum_probs=177.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhCCCCeEeecCCceEEEEEcCCCCcEEEEEeccCCCC
Q 024905 27 NQVMISAQQDKDWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVVLRADMDALP 106 (260)
Q Consensus 27 ~~i~~~i~~~~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nlia~~~~~~~~~i~l~~H~DtVp 106 (260)
+++.++++++++++++++++|++|||++++|.++++||.++|+++||++...+..+|+++.++.+ .|+|+|+||+||||
T Consensus 2 ~~~~~~~~~~~~~~~~~l~~Lv~ips~s~~e~~~~~~l~~~l~~~g~~~~~~~~~~~v~~~~g~~-~~~l~l~~H~DtVp 80 (395)
T TIGR03526 2 NQIKSEAEKYRGDMIRFLRDLVAIPSESGDEGRVALRIKQEMEKLGFDKVEIDPMGNVLGYIGHG-PKLIAMDAHIDTVG 80 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCceEEEcCCCcEEEEeCCC-CCEEEEEeeccccC
Confidence 35778889999999999999999999999999999999999999999854344568999998533 48999999999999
Q ss_pred CCCCCCCcccc----ccCCccccCC---CcHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC--CChHHHHHcCCCC
Q 024905 107 LQELVEWEHKS----KIDGKMHACG---HDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG--AGAFHMIKEGALG 177 (260)
Q Consensus 107 ~~~~~~w~~~~----~~~g~~~g~G---~kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g--~G~~~~~~~g~~~ 177 (260)
+++...|.++| ++||++|||| ||++++++++|++.|++.+..+++++.+++++|||.+ .|++.+++++.+
T Consensus 81 ~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~~~g~~~~~~~~~~~~- 159 (395)
T TIGR03526 81 IGDMDQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYTLLVTGTVQEEDCDGLCWQYIIEEDKI- 159 (395)
T ss_pred CCCcccccCCCCceEEECCEEEecCccccchhHHHHHHHHHHHHHcCCCCCceEEEEEecccccCCcHhHHHHHhccCC-
Confidence 98888896654 4689999999 6999999999999999887667789999999999943 466777776544
Q ss_pred CCceEEEecccCCCCCcceEeecccccceeeEEEEEEEccCCCcCCCCCCcCHHHHHHHHHHHHHHHHhh
Q 024905 178 DSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISR 247 (260)
Q Consensus 178 ~~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~ 247 (260)
.+|++|+. +|++. .+ ..+++|..+++|+++|+++|++.|+.|+|||..+++++.+|+++...
T Consensus 160 ~~d~~i~~-----ep~~~-~i--~~g~~G~~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~ 221 (395)
T TIGR03526 160 KPEFVVIT-----EPTDM-NI--YRGQRGRMEIKVTVKGVSCHGSAPERGDNAIYKMAPILKELSQLNAN 221 (395)
T ss_pred CCCEEEec-----CCCCc-eE--EEEcceEEEEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHhhhh
Confidence 46888874 34332 12 23478999999999999999999999999999999999999987653
No 11
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=100.00 E-value=6.1e-36 Score=272.00 Aligned_cols=211 Identities=18% Similarity=0.221 Sum_probs=175.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhCCCCeEeecCCceEEEEEcCCCCcEEEEEeccCCCC
Q 024905 27 NQVMISAQQDKDWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVVLRADMDALP 106 (260)
Q Consensus 27 ~~i~~~i~~~~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nlia~~~~~~~~~i~l~~H~DtVp 106 (260)
+++.++++++++++++++++|++|||++++|.++++||.++|+++||+....+..+|+++.++. ++|+|+|+||+||||
T Consensus 2 ~~~~~~i~~~~~~~~~~~~~lv~i~s~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~n~~~~~g~-~~~~l~l~~H~DtVp 80 (395)
T TIGR03320 2 NQIKSEAKKYRGDMIRFLRDLVAIPSESGDEKRVAERIKEEMEKLGFDKVEIDPMGNVLGYIGH-GPKLIAMDAHIDTVG 80 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHhCCcEEEECCCCCEEEEeCC-CCcEEEEEecccccC
Confidence 3577888888999999999999999999999999999999999999985333456899999843 348999999999999
Q ss_pred CCCCCCCcccc----ccCCccccCC---CcHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCCCC--hHHHHHcCCCC
Q 024905 107 LQELVEWEHKS----KIDGKMHACG---HDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGGAG--AFHMIKEGALG 177 (260)
Q Consensus 107 ~~~~~~w~~~~----~~~g~~~g~G---~kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g~G--~~~~~~~g~~~ 177 (260)
+++...|.++| ++||++|||| ||+++++++.|+++|++.+..+++++.|.+++|||.+.| .+.++++..+
T Consensus 81 ~~~~~~w~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~A~~~l~~~g~~~~~~i~~~~~~dEE~~~g~~~~~~~~~~~~- 159 (395)
T TIGR03320 81 IGDSKQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYTLLVTGTVQEEDCDGLCWQYIIEEDGI- 159 (395)
T ss_pred CCCccccccCCCceEEECCEEEecCccCccchHHHHHHHHHHHHHcCCCCCceEEEEecccccccCchHHHHHHHhcCC-
Confidence 98888896654 5689999999 499999999999999988766788999999999997543 4566665433
Q ss_pred CCceEEEecccCCCCCcceEeecccccceeeEEEEEEEccCCCcCCCCCCcCHHHHHHHHHHHHHHHHhh
Q 024905 178 DSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISR 247 (260)
Q Consensus 178 ~~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~ 247 (260)
.+|++++.+ |++. .+ ..+++|..+++|+++|+++|+|.|+.|.||+..+++++..|+++...
T Consensus 160 ~~d~~iv~e-----p~~~-~i--~~g~~G~~~~~v~~~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~~~~ 221 (395)
T TIGR03320 160 KPEFVVITE-----PTDM-NI--YRGQRGRMEIKVTVKGVSCHGSAPERGDNAIYKMAPILKELSQLNAN 221 (395)
T ss_pred CCCEEEEcC-----CCcc-ce--EEecceEEEEEEEEeeeccccCCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 478888743 4332 11 23478999999999999999999999999999999999999987653
No 12
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=100.00 E-value=8e-36 Score=271.22 Aligned_cols=204 Identities=22% Similarity=0.292 Sum_probs=172.1
Q ss_pred hhHHHHHHHHHHHHhCCCCCc-----chHHHHHHHHHHHHhCCCC-eEeec-------C--CceEEEEEcCC-CCcEEEE
Q 024905 35 QDKDWLVSVRRQIHENPELLF-----EEHNTSALIRRELDKLGIP-YAYPV-------A--KTGIVAQIGSG-SRPVVVL 98 (260)
Q Consensus 35 ~~~~~~~~~~~~l~~ips~s~-----~e~~~~~~l~~~l~~~G~~-~~~~~-------~--~~nlia~~~~~-~~~~i~l 98 (260)
++.+++++++++|++|||+|+ +|.++++||.++|+++||+ +++.+ . ++|++++++++ ++|+|+|
T Consensus 2 ~~~~~~~~~l~~lv~i~s~s~~~~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~nl~~~~~g~~~~~~lll 81 (400)
T PRK13983 2 ELRDEMIELLSELIAIPAVNPDFGGEGEKEKAEYLESLLKEYGFDEVERYDAPDPRVIEGVRPNIVAKIPGGDGKRTLWI 81 (400)
T ss_pred chHHHHHHHHHHHhCcCCCCCCCCCccHHHHHHHHHHHHHHcCCceEEEEecCCcccccCCCccEEEEecCCCCCCeEEE
Confidence 345789999999999999984 5899999999999999998 76421 1 68999999765 3479999
Q ss_pred EeccCCCCCCCCCCCcccc----ccCCccccCC---CcHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC--CChHH
Q 024905 99 RADMDALPLQELVEWEHKS----KIDGKMHACG---HDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG--AGAFH 169 (260)
Q Consensus 99 ~~H~DtVp~~~~~~w~~~~----~~~g~~~g~G---~kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g--~G~~~ 169 (260)
+||+||||+++...|.+++ +++|++|||| +|+++++++.|+++|++.+..++++|.|+|++|||.| .|+++
T Consensus 82 ~~H~Dtvp~~~~~~W~~~p~~~~~~~g~lyGrG~~D~K~g~~a~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~~g~~~ 161 (400)
T PRK13983 82 ISHMDVVPPGDLSLWETDPFKPVVKDGKIYGRGSEDNGQGIVSSLLALKALMDLGIRPKYNLGLAFVSDEETGSKYGIQY 161 (400)
T ss_pred EeeccccCCCCcccccCCCCcceeeCCEEEecCccCccchHHHHHHHHHHHHHhCCCCCCcEEEEEEeccccCCcccHHH
Confidence 9999999998777886553 4689999998 4899999999999999888789999999999999976 48999
Q ss_pred HHHc--CCCCCCceEEEecccCCCCCcceEeecccccceeeEEEEEEEccCCCcCCCCCCcCHHHHHHHHHHHHHH
Q 024905 170 MIKE--GALGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQ 243 (260)
Q Consensus 170 ~~~~--g~~~~~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~ 243 (260)
++++ +.+.+.|++++.+ .++|++... ..+++|..+++|+++|+++|+|.|+.|+||+..+++++.++++
T Consensus 162 ~~~~~~~~~~~~d~~i~~~--~~~~~~~~i---~~~~~G~~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~ 232 (400)
T PRK13983 162 LLKKHPELFKKDDLILVPD--AGNPDGSFI---EIAEKSILWLKFTVKGKQCHASTPENGINAHRAAADFALELDE 232 (400)
T ss_pred HHhhcccccCCCCEEEEec--CCCCCCcee---EEeecceEEEEEEEEeEccccCCCCCCCCHHHHHHHHHHHHHH
Confidence 9886 5555678888743 355666532 2347899999999999999999999999999999999999987
No 13
>PRK07338 hypothetical protein; Provisional
Probab=100.00 E-value=7.1e-35 Score=265.52 Aligned_cols=212 Identities=17% Similarity=0.158 Sum_probs=175.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhCCCCCcch---HHHHHHHHHHHHhCCCCeEeec-----------------CCceE
Q 024905 25 LTNQVMISAQQDKDWLVSVRRQIHENPELLFEE---HNTSALIRRELDKLGIPYAYPV-----------------AKTGI 84 (260)
Q Consensus 25 ~~~~i~~~i~~~~~~~~~~~~~l~~ips~s~~e---~~~~~~l~~~l~~~G~~~~~~~-----------------~~~nl 84 (260)
+..++.++++++++++++++++|++|||+|+++ .++++||.++|+++|++++..+ ..+|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~nl 83 (402)
T PRK07338 4 EERAVLDLIDDRQAPMLEQLIAWAAINSGSRNLDGLARMAELLADAFAALPGEIELIPLPPVEVIDADGRTLEQAHGPAL 83 (402)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecCCccccccccccccccCcCCeE
Confidence 567788889999999999999999999999764 6799999999999999887521 12699
Q ss_pred EEEEcCCCCcEEEEEeccCCCCCCCCCCCcccc---ccCCccccCC---CcHHHHHHHHHHHHHHhccCCCCceEEEEee
Q 024905 85 VAQIGSGSRPVVVLRADMDALPLQELVEWEHKS---KIDGKMHACG---HDVHTTMLLGAAKLIHQRKDKLKGTVRILFQ 158 (260)
Q Consensus 85 ia~~~~~~~~~i~l~~H~DtVp~~~~~~w~~~~---~~~g~~~g~G---~kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~ 158 (260)
+++++++.+++|+|+||+||||++. .||.+ ++||++|||| |||+++++++|+++|++.+.++++++.|+|+
T Consensus 84 ~a~~~~~~~~~lll~gH~DvVp~~~---~Pf~~~~~~~~g~lyGrG~~DmKgg~aa~l~a~~~l~~~~~~~~~~i~~~~~ 160 (402)
T PRK07338 84 HVSVRPEAPRQVLLTGHMDTVFPAD---HPFQTLSWLDDGTLNGPGVADMKGGIVVMLAALLAFERSPLADKLGYDVLIN 160 (402)
T ss_pred EEEECCCCCccEEEEeecCccCCCC---CcccCCeEeeCCEEECCcHHhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEEE
Confidence 9999654346899999999999853 56764 5799999998 4999999999999998877777889999999
Q ss_pred cCCCCC-CChHHHHHcCCCCCCceEEEecccCCCCCcceEeecccccceeeEEEEEEEccCCCcCC-CCCCcCHHHHHHH
Q 024905 159 PAEEGG-AGAFHMIKEGALGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAM-PHSTIDPILTASS 236 (260)
Q Consensus 159 ~dEE~g-~G~~~~~~~g~~~~~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~v~G~~~Hs~~-p~~g~nAi~~~~~ 236 (260)
+|||.| .|++.+++++. .+.+++++.++ +.+.+.+. ..++|..+++|+++|+++|+|. |+.|+|||..+++
T Consensus 161 ~dEE~g~~g~~~~~~~~~-~~~~~~i~~ep--~~~~~~v~----~~~kG~~~~~v~v~G~~aHs~~~p~~g~nAi~~~~~ 233 (402)
T PRK07338 161 PDEEIGSPASAPLLAELA-RGKHAALTYEP--ALPDGTLA----GARKGSGNFTIVVTGRAAHAGRAFDEGRNAIVAAAE 233 (402)
T ss_pred CCcccCChhhHHHHHHHh-ccCcEEEEecC--CCCCCcEE----eecceeEEEEEEEEeEcccCCCCcccCccHHHHHHH
Confidence 999987 68999888753 24678887654 32334432 2368999999999999999994 9999999999999
Q ss_pred HHHHHHHHHh
Q 024905 237 VILALQQLIS 246 (260)
Q Consensus 237 ~i~~l~~~~~ 246 (260)
++..|+++..
T Consensus 234 ~i~~l~~l~~ 243 (402)
T PRK07338 234 LALALHALNG 243 (402)
T ss_pred HHHHHHhhhc
Confidence 9999988764
No 14
>PRK08201 hypothetical protein; Provisional
Probab=100.00 E-value=3.9e-35 Score=271.37 Aligned_cols=216 Identities=17% Similarity=0.239 Sum_probs=174.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhCCCCCc------chHHHHHHHHHHHHhCCCC-eEee--cCCceEEEEEcCC-CCc
Q 024905 25 LTNQVMISAQQDKDWLVSVRRQIHENPELLF------EEHNTSALIRRELDKLGIP-YAYP--VAKTGIVAQIGSG-SRP 94 (260)
Q Consensus 25 ~~~~i~~~i~~~~~~~~~~~~~l~~ips~s~------~e~~~~~~l~~~l~~~G~~-~~~~--~~~~nlia~~~~~-~~~ 94 (260)
|.+++.++++++++++++++++|++|||+++ +|.++++||.++|+++||+ ++.. .+++|+++++.++ ++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~LV~i~Svs~~~~~~~~~~~~a~~l~~~l~~~G~~~~~~~~~~~~~~l~a~~~~~~~~~ 80 (456)
T PRK08201 1 MMQQVEAYLRERREAHLEELKEFLRIPSISALSEHKEDVRKAAEWLAGALEKAGLEHVEIMETAGHPIVYADWLHAPGKP 80 (456)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHcCCCeEEEEecCCCCEEEEEecCCCCCC
Confidence 4568889999999999999999999999985 5678999999999999997 4432 3568999988544 468
Q ss_pred EEEEEeccCCCCCCCCCCCcccc----ccCCccccCC---CcHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC-CC
Q 024905 95 VVVLRADMDALPLQELVEWEHKS----KIDGKMHACG---HDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AG 166 (260)
Q Consensus 95 ~i~l~~H~DtVp~~~~~~w~~~~----~~~g~~~g~G---~kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g-~G 166 (260)
+|+|+||+||||+++...|.++| ++||++|||| |||++++++.|++.|++.+..++++|.|++++|||.| .|
T Consensus 81 ~lll~gH~DvVp~~~~~~W~~dPf~~~~~~g~lyGRG~~DmKgglaa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g 160 (456)
T PRK08201 81 TVLIYGHYDVQPVDPLNLWETPPFEPTIRDGKLYARGASDDKGQVFMHLKAVEALLKVEGTLPVNVKFCIEGEEEIGSPN 160 (456)
T ss_pred EEEEEeccCCcCCCchhcccCCCCceEeECCEEEEEecccCcHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccCCcc
Confidence 99999999999997766786543 5799999998 4999999999999998766667889999999999987 78
Q ss_pred hHHHHHcC--CCCCCceEEEecccCCCCCcceEeecccccceeeEEEEEEEccCC--CcCCCCC-CcCHHHHHHHHHHHH
Q 024905 167 AFHMIKEG--ALGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGG--HAAMPHS-TIDPILTASSVILAL 241 (260)
Q Consensus 167 ~~~~~~~g--~~~~~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~v~G~~~--Hs~~p~~-g~nAi~~~~~~i~~l 241 (260)
+..++++. .+ ++|++++.++....+... . +..+++|..+++|+++|+++ |||.|.. +.|||..+++++.+|
T Consensus 161 ~~~~l~~~~~~~-~~d~~ii~e~~~~~~~~~-~--i~~g~kG~~~~~l~v~G~~~~~Hs~~~~~~~~nAi~~~~~~l~~l 236 (456)
T PRK08201 161 LDSFVEEEKDKL-AADVVLISDTTLLGPGKP-A--ICYGLRGLAALEIDVRGAKGDLHSGLYGGAVPNALHALVQLLASL 236 (456)
T ss_pred HHHHHHhhHHhc-cCCEEEEeCCCcCCCCCE-E--EEEecCCeEEEEEEEEeCCCCCccccccCcCCCHHHHHHHHHHhc
Confidence 88888753 12 358888865432111111 1 23458999999999999998 9997654 479999999999999
Q ss_pred HHH
Q 024905 242 QQL 244 (260)
Q Consensus 242 ~~~ 244 (260)
+++
T Consensus 237 ~~~ 239 (456)
T PRK08201 237 HDE 239 (456)
T ss_pred CCC
Confidence 764
No 15
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=100.00 E-value=1.5e-34 Score=264.01 Aligned_cols=211 Identities=21% Similarity=0.276 Sum_probs=177.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhCCCCCcch---HHHHHHHHHHHHhCCCCeEeec----CCceEEEEEcCCCCcEEEEE
Q 024905 27 NQVMISAQQDKDWLVSVRRQIHENPELLFEE---HNTSALIRRELDKLGIPYAYPV----AKTGIVAQIGSGSRPVVVLR 99 (260)
Q Consensus 27 ~~i~~~i~~~~~~~~~~~~~l~~ips~s~~e---~~~~~~l~~~l~~~G~~~~~~~----~~~nlia~~~~~~~~~i~l~ 99 (260)
+++.++++++++++++++++|++|||++++| .++++||.++|+++|++++... .++|+++++++.++|+|+|+
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~lia~~~g~~~~~ill~ 105 (410)
T PRK06133 26 AELLAAAQQEQPAYLDTLKELVSIESGSGDAEGLKQVAALLAERLKALGAKVERAPTPPSAGDMVVATFKGTGKRRIMLI 105 (410)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCCeEEEEECCCCCceEEEE
Confidence 5588899999999999999999999999765 4899999999999999987632 35799999976556899999
Q ss_pred eccCCCCCCCCCCCcccc--ccCCccccCCC---cHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC-CChHHHHHc
Q 024905 100 ADMDALPLQELVEWEHKS--KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKE 173 (260)
Q Consensus 100 ~H~DtVp~~~~~~w~~~~--~~~g~~~g~G~---kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g-~G~~~~~~~ 173 (260)
||+||||+++ .|.++| .++|++||||+ |+++++++++++.|++.+..++++|.|+|++|||.| .|++.++++
T Consensus 106 ~H~D~Vp~~~--~w~~~Pf~~~~~~iyGrG~~D~kgg~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~G~~~~~~~ 183 (410)
T PRK06133 106 AHMDTVYLPG--MLAKQPFRIDGDRAYGPGIADDKGGVAVILHALKILQQLGFKDYGTLTVLFNPDEETGSPGSRELIAE 183 (410)
T ss_pred eecCccCCCC--ccCCCCEEEECCEEECCccccchHHHHHHHHHHHHHHHcCCCCCCCEEEEEECCcccCCccHHHHHHH
Confidence 9999999853 475443 67899999984 899999999999999887777899999999999987 799999976
Q ss_pred CCCCCCceEEEecccCCCCCcceEeecccccceeeEEEEEEEccCCCcC-CCCCCcCHHHHHHHHHHHHHHHHh
Q 024905 174 GALGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAA-MPHSTIDPILTASSVILALQQLIS 246 (260)
Q Consensus 174 g~~~~~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~v~G~~~Hs~-~p~~g~nAi~~~~~~i~~l~~~~~ 246 (260)
.. .+.|++++.++ +.+++.+.. .++|..+++++++|+++||| .|+.|+|||..+++++..|+++..
T Consensus 184 ~~-~~~d~~i~~ep--~~~~~~v~~----~~~G~~~~~v~v~G~~~Hsg~~p~~g~nAi~~~~~~i~~l~~~~~ 250 (410)
T PRK06133 184 LA-AQHDVVFSCEP--GRAKDALTL----ATSGIATALLEVKGKASHAGAAPELGRNALYELAHQLLQLRDLGD 250 (410)
T ss_pred Hh-ccCCEEEEeCC--CCCCCCEEE----eccceEEEEEEEEeeccccCCCcccCcCHHHHHHHHHHHHHhccC
Confidence 43 35799998764 333333332 36899999999999999986 899999999999999999988653
No 16
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=100.00 E-value=7.9e-35 Score=261.59 Aligned_cols=193 Identities=24% Similarity=0.346 Sum_probs=163.0
Q ss_pred HHHHHHHhCCCCCcch-HHHHHHHHHHHHhCCCCeEeec-----CCceEEEEEcCCCCcEEEEEeccCCCCCCCCCCCcc
Q 024905 42 SVRRQIHENPELLFEE-HNTSALIRRELDKLGIPYAYPV-----AKTGIVAQIGSGSRPVVVLRADMDALPLQELVEWEH 115 (260)
Q Consensus 42 ~~~~~l~~ips~s~~e-~~~~~~l~~~l~~~G~~~~~~~-----~~~nlia~~~~~~~~~i~l~~H~DtVp~~~~~~w~~ 115 (260)
+++++|++|||+++++ .++++||.++|+++|++++... .++|+++.+++.++|+|+|+||+||||+++ ..|.+
T Consensus 1 ~~l~~lv~i~S~s~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~nl~~~~~~~~~~~i~l~~H~Dtvp~~~-~~w~~ 79 (364)
T TIGR01892 1 EILTKLVAFDSTSFRPNVDLIDWAQAYLEALGFSVEVQPFPDGAEKSNLVAVIGPSGAGGLALSGHTDVVPYDD-AAWTR 79 (364)
T ss_pred ChHHHhhCcCCcCCccHHHHHHHHHHHHHHcCCeEEEEeCCCCCccccEEEEecCCCCCeEEEEcccccccCCC-CcCCC
Confidence 3688999999999865 7999999999999999887532 368999999654458999999999999865 57854
Q ss_pred cc----ccCCccccCC---CcHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC-CChHHHHHcCCCCCCceEEEecc
Q 024905 116 KS----KIDGKMHACG---HDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEGALGDSEAIFGMHI 187 (260)
Q Consensus 116 ~~----~~~g~~~g~G---~kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g-~G~~~~~~~g~~~~~d~~i~~~~ 187 (260)
+| +++|++|||| ||++++++|+++++|++. .++++|.|+|++|||.| .|++++++++.+ .+|++++
T Consensus 80 ~Pf~~~~~~~~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~v~~~~~~~EE~g~~G~~~~~~~~~~-~~d~~i~--- 153 (364)
T TIGR01892 80 DPFRLTEKDGRLYGRGTCDMKGFLACALAAAPDLAAE--QLKKPLHLALTADEEVGCTGAPKMIEAGAG-RPRHAII--- 153 (364)
T ss_pred CCCcceeeCCEEEecCccccchHHHHHHHHHHHHHhc--CcCCCEEEEEEeccccCCcCHHHHHHhcCC-CCCEEEE---
Confidence 33 6789999999 699999999999999875 36789999999999987 899999998753 4688876
Q ss_pred cCCCCCcceEeecccccceeeEEEEEEEccCCCcCCCCCCcCHHHHHHHHHHHHHHHHh
Q 024905 188 DVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLIS 246 (260)
Q Consensus 188 ~~~~~~~~~~~~~g~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~ 246 (260)
++|++.... .+++|..+++|+++|+++|++.|+.|+|||..+++++.+|+++..
T Consensus 154 --~ep~~~~~~---~~~~G~~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~ 207 (364)
T TIGR01892 154 --GEPTRLIPV---RAHKGYASAEVTVRGRSGHSSYPDSGVNAIFRAGRFLQRLVHLAD 207 (364)
T ss_pred --CCCCCceeE---EeeceEEEEEEEEEcccccccCCccCcCHHHHHHHHHHHHHHHHH
Confidence 455555332 246899999999999999999999999999999999999988754
No 17
>PRK07522 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=7.7e-35 Score=263.70 Aligned_cols=199 Identities=20% Similarity=0.261 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHhCCCCCcch-HHHHHHHHHHHHhCCCCeEee----cCCceEEEEEcCCCCcEEEEEeccCCCCCCCCCC
Q 024905 38 DWLVSVRRQIHENPELLFEE-HNTSALIRRELDKLGIPYAYP----VAKTGIVAQIGSGSRPVVVLRADMDALPLQELVE 112 (260)
Q Consensus 38 ~~~~~~~~~l~~ips~s~~e-~~~~~~l~~~l~~~G~~~~~~----~~~~nlia~~~~~~~~~i~l~~H~DtVp~~~~~~ 112 (260)
.++++++++|++|||+|++| .++++|+.++|+++|+++++. ++++|++++++++++|+|+|+||+||||+++ ..
T Consensus 4 ~~~~~~l~~lv~i~S~s~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~nv~a~~~~~~~~~ill~~H~Dtv~~~~-~~ 82 (385)
T PRK07522 4 MSSLDILERLVAFDTVSRDSNLALIEWVRDYLAAHGVESELIPDPEGDKANLFATIGPADRGGIVLSGHTDVVPVDG-QA 82 (385)
T ss_pred hhHHHHHHHHhCCCCcCCCccHHHHHHHHHHHHHcCCeEEEEecCCCCcccEEEEeCCCCCCeEEEEeecccccCCC-CC
Confidence 46789999999999999887 499999999999999998652 2468999999755568999999999999864 46
Q ss_pred Cc---ccc-ccCCccccCCC---cHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC-CChHHHHHcCC--CCCCceE
Q 024905 113 WE---HKS-KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEGA--LGDSEAI 182 (260)
Q Consensus 113 w~---~~~-~~~g~~~g~G~---kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g-~G~~~~~~~g~--~~~~d~~ 182 (260)
|. |.+ ++||++||||+ |++++++++|++.|++. .++++|.|+|++|||.| .|+++++++.. ..++|++
T Consensus 83 W~~~pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~i~~~~~~dEE~g~~G~~~l~~~~~~~~~~~d~~ 160 (385)
T PRK07522 83 WTSDPFRLTERDGRLYGRGTCDMKGFIAAALAAVPELAAA--PLRRPLHLAFSYDEEVGCLGVPSMIARLPERGVKPAGC 160 (385)
T ss_pred CCCCCCceEEECCEEEeccccccchHHHHHHHHHHHHHhC--CCCCCEEEEEEeccccCCccHHHHHHHhhhcCCCCCEE
Confidence 75 443 46999999984 99999999999999876 36789999999999977 89999987521 1236888
Q ss_pred EEecccCCCCCcceEeecccccceeeEEEEEEEccCCCcCCCCCCcCHHHHHHHHHHHHHHHHhh
Q 024905 183 FGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISR 247 (260)
Q Consensus 183 i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~ 247 (260)
+. ++|++. .+..+++|..+++|+++|+++|+|.|+.|+||+..+++++..|+++..+
T Consensus 161 i~-----~ep~~~---~~~~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~ 217 (385)
T PRK07522 161 IV-----GEPTSM---RPVVGHKGKAAYRCTVRGRAAHSSLAPQGVNAIEYAARLIAHLRDLADR 217 (385)
T ss_pred EE-----ccCCCC---eeeeeecceEEEEEEEEeeccccCCCccCcCHHHHHHHHHHHHHHHHHH
Confidence 76 445543 1223478999999999999999999999999999999999999987654
No 18
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=1e-34 Score=262.09 Aligned_cols=205 Identities=18% Similarity=0.226 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhCCCCeEee--cCCceEEEEEcCCCCcEEEEEeccCCCCCCCCCCCcc
Q 024905 38 DWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYP--VAKTGIVAQIGSGSRPVVVLRADMDALPLQELVEWEH 115 (260)
Q Consensus 38 ~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~--~~~~nlia~~~~~~~~~i~l~~H~DtVp~~~~~~w~~ 115 (260)
.++++++++|++|||+|++|.++++|+.++|+++||+++.. ++.+|++++++ .++|+|+|+||+||||+++...|.+
T Consensus 2 ~~~~~~l~~Lv~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~n~~~~~g-~~~~~i~l~~H~D~Vp~g~~~~w~~ 80 (375)
T PRK13009 2 SDVLELAQDLIRRPSVTPDDAGCQDLLAERLEALGFTCERMDFGDVKNLWARRG-TEGPHLCFAGHTDVVPPGDLEAWTS 80 (375)
T ss_pred chHHHHHHHHhCCCCCCCchhhHHHHHHHHHHHcCCeEEEeccCCCcEEEEEec-CCCCEEEEEeecccCCCCCcccCCC
Confidence 35789999999999999999999999999999999998752 45789999984 3468999999999999987778954
Q ss_pred c---c-ccCCccccCCC---cHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC--CChHHHHHcCC--CCCCceEEE
Q 024905 116 K---S-KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG--AGAFHMIKEGA--LGDSEAIFG 184 (260)
Q Consensus 116 ~---~-~~~g~~~g~G~---kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g--~G~~~~~~~g~--~~~~d~~i~ 184 (260)
+ + ++||++||||+ |+++++++.|++.|++.+.+++++|.|++++|||.+ .|++.+++... ...+|++++
T Consensus 81 ~Pf~~~~~~g~iyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~i~~~~~~~EE~~~~~G~~~~~~~~~~~~~~~d~~i~ 160 (375)
T PRK13009 81 PPFEPTIRDGMLYGRGAADMKGSLAAFVVAAERFVAAHPDHKGSIAFLITSDEEGPAINGTVKVLEWLKARGEKIDYCIV 160 (375)
T ss_pred CCCCcEEECCEEEecCCccChHHHHHHHHHHHHHHHhcCCCCceEEEEEEeecccccccCHHHHHHHHHHcCcCCCEEEE
Confidence 4 3 56999999985 899999999999998887778899999999999975 58998875411 124788887
Q ss_pred ecccCCCCCcceEeecccccceeeEEEEEEEccCCCcCCCCCCcCHHHHHHHHHHHHHHHHh
Q 024905 185 MHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLIS 246 (260)
Q Consensus 185 ~~~~~~~~~~~~~~~~g~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~ 246 (260)
.++......+. ....+++|..+++|+++|+++|++.|+.|.||+..+++++.+|+.+..
T Consensus 161 ~ep~~~~~~~~---~i~~g~~g~~~~~i~v~G~~~Ha~~p~~g~nAi~~~~~~l~~l~~~~~ 219 (375)
T PRK13009 161 GEPTSTERLGD---VIKNGRRGSLTGKLTVKGVQGHVAYPHLADNPIHLAAPALAELAATEW 219 (375)
T ss_pred cCCCcccCCCC---eEEEecceEEEEEEEEEecCcccCCCCcccCHHHHHHHHHHHHHhhhc
Confidence 65432111121 112346899999999999999999999999999999999999987653
No 19
>PRK08596 acetylornithine deacetylase; Validated
Probab=100.00 E-value=1.6e-34 Score=264.69 Aligned_cols=207 Identities=19% Similarity=0.152 Sum_probs=174.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhCCCCC---cchHHHHHHHHHHHHhCCCCeEee---cCCceEEEEEcCC-C--CcEEEE
Q 024905 28 QVMISAQQDKDWLVSVRRQIHENPELL---FEEHNTSALIRRELDKLGIPYAYP---VAKTGIVAQIGSG-S--RPVVVL 98 (260)
Q Consensus 28 ~i~~~i~~~~~~~~~~~~~l~~ips~s---~~e~~~~~~l~~~l~~~G~~~~~~---~~~~nlia~~~~~-~--~~~i~l 98 (260)
++.+++++..+++++++++|++|||++ ++|.++++||.++|+++||+++.. ++++|+++++++. + +|+|+|
T Consensus 3 ~~~~~i~~~~~~~~~~l~~Lv~i~S~s~~~~~e~~~a~~l~~~l~~~G~~~~~~~~~~~~~nvia~~~g~~~~~~~~lll 82 (421)
T PRK08596 3 QLLEQIELRKDELLELLKTLVRFETPAPPARNTNEAQEFIAEFLRKLGFSVDKWDVYPNDPNVVGVKKGTESDAYKSLII 82 (421)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHCCCeEEEEEccCCCceEEEEecCCCCCCCcEEEE
Confidence 466778888899999999999999998 478899999999999999998753 3579999999653 2 368999
Q ss_pred EeccCCCCCCCCCCCcccc----ccCCccccCCC---cHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC-CChHHH
Q 024905 99 RADMDALPLQELVEWEHKS----KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHM 170 (260)
Q Consensus 99 ~~H~DtVp~~~~~~w~~~~----~~~g~~~g~G~---kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g-~G~~~~ 170 (260)
+||+||||+++...|+++| ++||++||||+ |++++++++|+++|++.+..++++|.|+|++|||.| .|++++
T Consensus 83 ~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~G~~~~ 162 (421)
T PRK08596 83 NGHMDVAEVSADEAWETNPFEPTIKDGWLYGRGAADMKGGLAGALFAIQLLHEAGIELPGDLIFQSVIGEEVGEAGTLQC 162 (421)
T ss_pred eccccccCCCCccccccCCCCcEEECCEEEeccccccchHHHHHHHHHHHHHHcCCCCCCcEEEEEEeccccCCcCHHHH
Confidence 9999999998777896543 57999999996 999999999999999988788999999999999987 799999
Q ss_pred HHcCCCCCCceEEEecccCCCCCcceEeecccccceeeEEEEEEEcc----------CCCcCCCCCCcCHHHHHHHHHHH
Q 024905 171 IKEGALGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGR----------GGHAAMPHSTIDPILTASSVILA 240 (260)
Q Consensus 171 ~~~g~~~~~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~v~G~----------~~Hs~~p~~g~nAi~~~~~~i~~ 240 (260)
++++. .+|++++.++ ++.. . .+++|...++++++|+ .+|++.|+.|.|||..++++|..
T Consensus 163 ~~~~~--~~d~~i~~ep-----~~~~-~---~~~~G~~~~~~~v~g~~~~~~~~~~~~~H~~~p~~G~nai~~~~~~i~~ 231 (421)
T PRK08596 163 CERGY--DADFAVVVDT-----SDLH-M---QGQGGVITGWITVKSPQTFHDGTRRQMIHAGGGLFGASAIEKMMKIIQS 231 (421)
T ss_pred HhcCC--CCCEEEECCC-----CCCc-c---ccccceeeEEEEEEeecccccccccccccccCCccCcCHHHHHHHHHHH
Confidence 98864 3688888543 3322 1 2367877777777775 47999999999999999999999
Q ss_pred HHHHH
Q 024905 241 LQQLI 245 (260)
Q Consensus 241 l~~~~ 245 (260)
|+++.
T Consensus 232 l~~~~ 236 (421)
T PRK08596 232 LQELE 236 (421)
T ss_pred HHHHH
Confidence 99875
No 20
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=100.00 E-value=2.6e-34 Score=259.10 Aligned_cols=201 Identities=19% Similarity=0.297 Sum_probs=164.4
Q ss_pred HHHHHHHHhCCCCCcchHHHHHHHHHHHHhCCCCeEee--cCCceEEEEEcCCCCcEEEEEeccCCCCCCCCCCCc---c
Q 024905 41 VSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYP--VAKTGIVAQIGSGSRPVVVLRADMDALPLQELVEWE---H 115 (260)
Q Consensus 41 ~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~--~~~~nlia~~~~~~~~~i~l~~H~DtVp~~~~~~w~---~ 115 (260)
++++++|++|||+|++|.++++||.++|+++||+++.. ++++|+++++++ ++|+|+|+||+||||+++.+.|. |
T Consensus 2 ~~~l~~lv~ips~s~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~~~~~~g~-~~~~i~~~~H~DtVp~~~~~~W~~~p~ 80 (370)
T TIGR01246 2 TELAKELISRPSVTPNDAGCQDIIAERLEKLGFEIEWMHFGDTKNLWATRGT-GEPVLAFAGHTDVVPAGPEEQWSSPPF 80 (370)
T ss_pred hHHHHHHhcCCCCCcchHHHHHHHHHHHHHCCCEEEEEecCCCceEEEEecC-CCcEEEEEccccccCCCCccccccCCC
Confidence 57899999999999999999999999999999998653 357899998644 46999999999999998777885 4
Q ss_pred cc-ccCCccccCCC---cHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC--CChHHHHHcCC--CCCCceEEEecc
Q 024905 116 KS-KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG--AGAFHMIKEGA--LGDSEAIFGMHI 187 (260)
Q Consensus 116 ~~-~~~g~~~g~G~---kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g--~G~~~~~~~g~--~~~~d~~i~~~~ 187 (260)
.+ .+||++||||+ |+++++++.|++.+.+.+.+++++|.|+|++|||.+ .|++.+++... ...+|++++.++
T Consensus 81 ~~~~~dg~~yGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~~~~~G~~~~~~~~~~~~~~~d~~i~~ep 160 (370)
T TIGR01246 81 EPVERDGKLYGRGAADMKGSLAAFIVAAERFVKKNPDHKGSISLLITSDEEGTAIDGTKKVVETLMARDELIDYCIVGEP 160 (370)
T ss_pred CcEEECCEEEecccccchHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeccccCCCcCHHHHHHHHHhcCCCCCEEEEcCC
Confidence 43 56899999974 899999999999998877678899999999999975 59988875311 124789987654
Q ss_pred cCCCCCcceEeecccccceeeEEEEEEEccCCCcCCCCCCcCHHHHHHHHHHHHHHHH
Q 024905 188 DVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLI 245 (260)
Q Consensus 188 ~~~~~~~~~~~~~g~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~ 245 (260)
....+.+.. +..+++|..+++++++|+++|++.|+.|+||+..+++++..|++..
T Consensus 161 ~~~~~~~~~---i~~~~~G~~~~~v~v~G~~~H~~~p~~g~nAi~~~~~~i~~l~~~~ 215 (370)
T TIGR01246 161 SSVKKLGDV---IKNGRRGSITGNLTIKGIQGHVAYPHLANNPIHKAAPALAELTAIK 215 (370)
T ss_pred CCcccCCce---EEEeeeEEEEEEEEEEccCcccCCcccCCCHHHHHHHHHHHHhhhh
Confidence 322222221 1234689999999999999999999999999999999999998764
No 21
>PRK07473 carboxypeptidase; Provisional
Probab=100.00 E-value=6.6e-34 Score=257.00 Aligned_cols=202 Identities=17% Similarity=0.212 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHHhCCCCCcchH---HHHHHHHHHHHhCCCCeEeec---C-CceEEEEEcCC--CCcEEEEEeccCCCCC
Q 024905 37 KDWLVSVRRQIHENPELLFEEH---NTSALIRRELDKLGIPYAYPV---A-KTGIVAQIGSG--SRPVVVLRADMDALPL 107 (260)
Q Consensus 37 ~~~~~~~~~~l~~ips~s~~e~---~~~~~l~~~l~~~G~~~~~~~---~-~~nlia~~~~~--~~~~i~l~~H~DtVp~ 107 (260)
.+++++++++|++|||+|++|. ++++|+.++|+++|++++... + .+|+++++++. .+|+|+|+||+||||+
T Consensus 10 ~~~~~~~l~~Lv~i~S~s~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~gH~DtV~~ 89 (376)
T PRK07473 10 SEAMLAGLRPWVECESPTWDAAAVNRMLDLAARDMAIMGATIERIPGRQGFGDCVRARFPHPRQGEPGILIAGHMDTVHP 89 (376)
T ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCCeEEEEeCCCCCCCCeEEEEecCCCCCC
Confidence 5788999999999999999875 677899999999999987632 2 24899998642 3589999999999976
Q ss_pred CC-CCCCccccccCCccccCC---CcHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC-CChHHHHHcCCCCCCceE
Q 024905 108 QE-LVEWEHKSKIDGKMHACG---HDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEGALGDSEAI 182 (260)
Q Consensus 108 ~~-~~~w~~~~~~~g~~~g~G---~kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g-~G~~~~~~~g~~~~~d~~ 182 (260)
.+ ...+||. ++||++|||| ||+++++++.|+++|++.+..++.+|.|+|++|||.| .|++.+++++.. ..|++
T Consensus 90 ~~~~~~~p~~-~~~g~lyGrG~~D~Kgglaa~l~A~~~l~~~~~~~~~~v~~~~~~dEE~g~~g~~~~~~~~~~-~~d~~ 167 (376)
T PRK07473 90 VGTLEKLPWR-REGNKCYGPGILDMKGGNYLALEAIRQLARAGITTPLPITVLFTPDEEVGTPSTRDLIEAEAA-RNKYV 167 (376)
T ss_pred CCCccCCCeE-EECCEEEcCchhhchHHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCcccCCccHHHHHHHhhc-cCCEE
Confidence 43 2233553 6789999999 6999999999999999887667789999999999987 799999987543 46899
Q ss_pred EEecccCCCCCcceEeecccccceeeEEEEEEEccCCCcC-CCCCCcCHHHHHHHHHHHHHHHHh
Q 024905 183 FGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAA-MPHSTIDPILTASSVILALQQLIS 246 (260)
Q Consensus 183 i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~v~G~~~Hs~-~p~~g~nAi~~~~~~i~~l~~~~~ 246 (260)
|+.++ +...+.+. .+++|..+++|+++|+++|+| .|+.|+|||..+++++.+|+++..
T Consensus 168 iv~ep--~~~~~~v~----~~~~G~~~~~v~~~G~~aHag~~p~~g~nAi~~~~~~i~~l~~~~~ 226 (376)
T PRK07473 168 LVPEP--GRPDNGVV----TGRYAIARFNLEATGRPSHAGATLSEGRSAIREMARQILAIDAMTT 226 (376)
T ss_pred EEeCC--CCCCCCEE----EECeeeEEEEEEEEeEcCCCCCCcccCcCHHHHHHHHHHHHHHhcC
Confidence 98654 22222332 347899999999999999997 799999999999999999988753
No 22
>PRK05111 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=4.3e-34 Score=258.68 Aligned_cols=195 Identities=24% Similarity=0.324 Sum_probs=162.3
Q ss_pred HHHHHHHHHHHhCCCCCcch-------HHHHHHHHHHHHhCCCCeEee-----cCCceEEEEEcCCCCcEEEEEeccCCC
Q 024905 38 DWLVSVRRQIHENPELLFEE-------HNTSALIRRELDKLGIPYAYP-----VAKTGIVAQIGSGSRPVVVLRADMDAL 105 (260)
Q Consensus 38 ~~~~~~~~~l~~ips~s~~e-------~~~~~~l~~~l~~~G~~~~~~-----~~~~nlia~~~~~~~~~i~l~~H~DtV 105 (260)
+++++++++|++|||+|++| .++++||.++|+++|++++.. .+++|++++++++ .++|+|+||+|||
T Consensus 5 ~~~i~~l~~lv~i~s~s~~e~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~nvia~~g~~-~~~il~~~H~Dvv 83 (383)
T PRK05111 5 PSFIEMYRALIATPSISATDPALDQSNRAVIDLLAGWFEDLGFNVEIQPVPGTRGKFNLLASLGSG-EGGLLLAGHTDTV 83 (383)
T ss_pred hHHHHHHHHHhCcCCcCCCCcccccchHHHHHHHHHHHHHCCCeEEEEecCCCCCCceEEEEeCCC-CCeEEEEeeecee
Confidence 46899999999999999865 579999999999999987653 1467999999533 3689999999999
Q ss_pred CCCCCCCCc---ccc-ccCCccccCC---CcHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC-CChHHHHHcCCCC
Q 024905 106 PLQELVEWE---HKS-KIDGKMHACG---HDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEGALG 177 (260)
Q Consensus 106 p~~~~~~w~---~~~-~~~g~~~g~G---~kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g-~G~~~~~~~g~~~ 177 (260)
|+++ ..|. |.. ++||++|||| |||++++++.+++.|++. .++++|.|+|++|||.| .|++++++++.++
T Consensus 84 p~~~-~~W~~~Pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~i~~~~~~~EE~g~~G~~~~~~~~~~~ 160 (383)
T PRK05111 84 PFDE-GRWTRDPFTLTEHDGKLYGLGTADMKGFFAFILEALRDIDLT--KLKKPLYILATADEETSMAGARAFAEATAIR 160 (383)
T ss_pred cCCC-CcCcCCCCccEEECCEEEecccccccHHHHHHHHHHHHHhhc--CCCCCeEEEEEeccccCcccHHHHHhcCCCC
Confidence 9854 4574 543 5799999998 599999999999999864 36789999999999987 7999999886553
Q ss_pred CCceEEEecccCCCCCcceEeecccccceeeEEEEEEEccCCCcCCCCCCcCHHHHHHHHHHHHHHHH
Q 024905 178 DSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLI 245 (260)
Q Consensus 178 ~~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~ 245 (260)
.|++++ ++|++... ..+++|..+++|+++|+++|+|.|+.|+|||..+++++.+++.+.
T Consensus 161 -~d~~i~-----~ep~~~~~---~~~~~G~~~~~i~v~G~~~H~~~p~~g~nai~~~~~~i~~l~~~~ 219 (383)
T PRK05111 161 -PDCAII-----GEPTSLKP---VRAHKGHMSEAIRITGQSGHSSDPALGVNAIELMHDVIGELLQLR 219 (383)
T ss_pred -CCEEEE-----cCCCCCce---eecccceEEEEEEEEeechhccCCccCcCHHHHHHHHHHHHHHHH
Confidence 588876 44554321 234789999999999999999999999999999999999998875
No 23
>PRK09133 hypothetical protein; Provisional
Probab=100.00 E-value=2.9e-34 Score=266.56 Aligned_cols=203 Identities=16% Similarity=0.205 Sum_probs=165.9
Q ss_pred hHHHHHHHHHHHHhCCCCC--cchHHHHHHHHHHHHhCCCCeE---e---ecCCceEEEEEcCC-CCcEEEEEeccCCCC
Q 024905 36 DKDWLVSVRRQIHENPELL--FEEHNTSALIRRELDKLGIPYA---Y---PVAKTGIVAQIGSG-SRPVVVLRADMDALP 106 (260)
Q Consensus 36 ~~~~~~~~~~~l~~ips~s--~~e~~~~~~l~~~l~~~G~~~~---~---~~~~~nlia~~~~~-~~~~i~l~~H~DtVp 106 (260)
+++++++++++|++|||++ ++|.++++||.++|+++|++++ . .+.++|+++++++. ++|+|+|+||+||||
T Consensus 35 ~~~~~~~~l~~Lv~i~S~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~nli~~~~g~~~~~~lll~~H~DtVp 114 (472)
T PRK09133 35 DQQAARDLYKELIEINTTASTGSTTPAAEAMAARLKAAGFADADIEVTGPYPRKGNLVARLRGTDPKKPILLLAHMDVVE 114 (472)
T ss_pred hHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHcCCCceEEEeccCCCCceeEEEEecCCCCCCcEEEEeecccCC
Confidence 3577899999999999998 6789999999999999999853 2 23578999999654 458999999999999
Q ss_pred CCCCCCCcccc----ccCCccccCCC---cHHHHHHHHHHHHHHhccCCCCceEEEEeecCCC-CC-CChHHHHHcCC-C
Q 024905 107 LQELVEWEHKS----KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEE-GG-AGAFHMIKEGA-L 176 (260)
Q Consensus 107 ~~~~~~w~~~~----~~~g~~~g~G~---kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE-~g-~G~~~~~~~g~-~ 176 (260)
+++ ..|.++| ++||++||||+ |+++++++.|+++|++.+..++++|.|++++||| +| .|+++++++.. .
T Consensus 115 ~~~-~~W~~dPf~~~~~dg~iyGRGa~D~Kg~~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~g~~G~~~l~~~~~~~ 193 (472)
T PRK09133 115 AKR-EDWTRDPFKLVEENGYFYGRGTSDDKADAAIWVATLIRLKREGFKPKRDIILALTGDEEGTPMNGVAWLAENHRDL 193 (472)
T ss_pred CCh-hcCCCCCCcceEeCCEEEecCcccchHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccCccchHHHHHHHHhhc
Confidence 864 4586553 56899999985 8999999999999998877789999999999999 66 79999987632 1
Q ss_pred CCCceEEEecccC------CCCCcceEeecccccceeeEEEEEEEccCCCcCCCCCCcCHHHHHHHHHHHHHHH
Q 024905 177 GDSEAIFGMHIDV------GIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQL 244 (260)
Q Consensus 177 ~~~d~~i~~~~~~------~~~~~~~~~~~g~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~ 244 (260)
-+.|++|+ ++.. ++|+.. .+..+++|..+++|+++|+++|||.|+ +.|||..+++++.+|+++
T Consensus 194 ~~~~~~i~-e~~~~~~~~~gept~~---~i~~g~kG~~~~~i~v~G~~~Hss~p~-~~nAi~~l~~~l~~l~~~ 262 (472)
T PRK09133 194 IDAEFALN-EGGGGTLDEDGKPVLL---TVQAGEKTYADFRLEVTNPGGHSSRPT-KDNAIYRLAAALSRLAAY 262 (472)
T ss_pred cCeEEEEE-CCCccccCCCCCceEE---EeeeecceeEEEEEEEecCCCCCCCCC-CCChHHHHHHHHHHHhhC
Confidence 13578777 5432 334332 223468999999999999999999996 589999999999999864
No 24
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=100.00 E-value=2.5e-34 Score=259.69 Aligned_cols=199 Identities=20% Similarity=0.319 Sum_probs=165.6
Q ss_pred HHHHHHHhCCC---CCcchHHHHHHHHHHHHhCCCCeEeec---CCc----eEEEEEcCC-CCcEEEEEeccCCCCCCCC
Q 024905 42 SVRRQIHENPE---LLFEEHNTSALIRRELDKLGIPYAYPV---AKT----GIVAQIGSG-SRPVVVLRADMDALPLQEL 110 (260)
Q Consensus 42 ~~~~~l~~ips---~s~~e~~~~~~l~~~l~~~G~~~~~~~---~~~----nlia~~~~~-~~~~i~l~~H~DtVp~~~~ 110 (260)
+++++|++||| ++++|.++++||.++|+++|++++... +.. |+++.+.+. ++|+|+|+|||||||+++.
T Consensus 2 ~~l~~lv~i~s~~~~~~~e~~~a~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ill~~H~DtVp~~~~ 81 (375)
T TIGR01910 2 ELLKDLISIPSVNPPGGNEETIANYIKDLLREFGFSTDVIEITDDRLKVLGKVVVKEPGNGNEKSLIFNGHYDVVPAGDL 81 (375)
T ss_pred hhHHhhhcCCCCCCCCcCHHHHHHHHHHHHHHCCCceEEEecCchhcccccceEEeccCCCCCCEEEEecccccccCCCh
Confidence 57899999999 778999999999999999999986521 223 356666544 4689999999999999877
Q ss_pred CCCccc---c-ccCCccccCCC---cHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC-CChHHHHHcCCCCCCceE
Q 024905 111 VEWEHK---S-KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEGALGDSEAI 182 (260)
Q Consensus 111 ~~w~~~---~-~~~g~~~g~G~---kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g-~G~~~~~~~g~~~~~d~~ 182 (260)
.+|+++ + +++|++||||+ |+++++++.+++.|++.+..++++|.|+|+++||.| .|++.+++++.+.++|++
T Consensus 82 ~~w~~~Pf~~~~~~g~i~grG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~G~~~~~~~~~~~~~d~~ 161 (375)
T TIGR01910 82 ELWKTDPFKPVEKDGKLYGRGATDMKGGLVALLYALKAIREAGIKPNGNIILQSVVDEESGEAGTLYLLQRGYFKDADGV 161 (375)
T ss_pred hhCcCCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEEEEEEcCcccCchhHHHHHHcCCCCCCCEE
Confidence 788544 3 56899999985 899999999999999887778999999999999987 799999998776567888
Q ss_pred EEecccCCCCCcceEeecccccceeeEEEEEEEccCCCcCCCCCCcCHHHHHHHHHHHHHHHHhh
Q 024905 183 FGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISR 247 (260)
Q Consensus 183 i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~ 247 (260)
++.+ |++...+ ...++|..+++|+++|+++|+|.|+.|.|||..+++++.+|+++...
T Consensus 162 i~~~-----~~~~~~v--~~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~l~~l~~~~~~ 219 (375)
T TIGR01910 162 LIPE-----PSGGDNI--VIGHKGSIWFKLRVKGKQAHASFPQFGVNAIMKLAKLITELNELEEH 219 (375)
T ss_pred EECC-----CCCCCce--EEEecceEEEEEEEeeeecccCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 8743 3321111 23478999999999999999999999999999999999999988654
No 25
>PRK07907 hypothetical protein; Provisional
Probab=100.00 E-value=9.6e-34 Score=261.59 Aligned_cols=212 Identities=15% Similarity=0.170 Sum_probs=172.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhCCCCCcc------hHHHHHHHHHHHHhCCC-CeEee--cCCceEEEEEcCC-CCcEE
Q 024905 27 NQVMISAQQDKDWLVSVRRQIHENPELLFE------EHNTSALIRRELDKLGI-PYAYP--VAKTGIVAQIGSG-SRPVV 96 (260)
Q Consensus 27 ~~i~~~i~~~~~~~~~~~~~l~~ips~s~~------e~~~~~~l~~~l~~~G~-~~~~~--~~~~nlia~~~~~-~~~~i 96 (260)
+++.++++++++++++++++|++|||+|++ |.++++||.++|+++|| +++.. ++++|++++++++ ++|+|
T Consensus 7 ~~~~~~i~~~~~~~~~ll~~LV~ipS~s~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~nl~a~~~~~~~~~~l 86 (449)
T PRK07907 7 DDLRARVAELLPRVRADLEELVRIPSVAADPFRREEVARSAEWVADLLREAGFDDVRVVSADGAPAVIGTRPAPPGAPTV 86 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccchhhHHHHHHHHHHHHHHcCCceEEEEecCCCCEEEEEecCCCCCCEE
Confidence 568888999999999999999999999963 68899999999999998 67653 4678999999754 46899
Q ss_pred EEEeccCCCCCCCCCCCcccc----ccCCccccCCC---cHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC-CChH
Q 024905 97 VLRADMDALPLQELVEWEHKS----KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAF 168 (260)
Q Consensus 97 ~l~~H~DtVp~~~~~~w~~~~----~~~g~~~g~G~---kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g-~G~~ 168 (260)
+|+||+||||+++...|.++| ++||++||||+ ||++++++.|+++| +.+++++|.|++++|||.| .|++
T Consensus 87 ll~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l---~~~~~~~i~~~~~~dEE~g~~g~~ 163 (449)
T PRK07907 87 LLYAHHDVQPPGDPDAWDSPPFELTERDGRLYGRGAADDKGGIAMHLAALRAL---GGDLPVGVTVFVEGEEEMGSPSLE 163 (449)
T ss_pred EEEcccCCCCCCCccccCCCCceeEEECCEEEECCccCCcHHHHHHHHHHHHh---ccCCCCcEEEEEEcCcccCCccHH
Confidence 999999999998777786553 56999999984 99999999999998 3356789999999999987 8999
Q ss_pred HHHHcCC-CCCCceEEEecccCCCCCcceEeecccccceeeEEEEEEE--ccCCCcCC-CCCCcCHHHHHHHHHHHHHHH
Q 024905 169 HMIKEGA-LGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVE--GRGGHAAM-PHSTIDPILTASSVILALQQL 244 (260)
Q Consensus 169 ~~~~~g~-~~~~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~v~--G~~~Hs~~-p~~g~nAi~~~~~~i~~l~~~ 244 (260)
+++++.. ..++|++++.++... ..+...+ ..+++|..+++++++ |+++|||. +..+.||+..+++++.+|++.
T Consensus 164 ~~l~~~~~~~~~d~~iv~E~~~~-~~~~p~i--~~~~kG~~~~~l~v~~~G~~~Hss~~~~~~~nAi~~~~~~l~~l~~~ 240 (449)
T PRK07907 164 RLLAEHPDLLAADVIVIADSGNW-SVGVPAL--TTSLRGNADVVVTVRTLEHAVHSGQFGGAAPDALTALVRLLATLHDE 240 (449)
T ss_pred HHHHhchHhhcCCEEEEecCCcC-CCCCeEE--EEecCCcEEEEEEEEECCCCCCCccccccCCCHHHHHHHHHHhhCCC
Confidence 9987631 124688888654221 1111112 234899999999998 89999997 466889999999999999865
No 26
>PRK06446 hypothetical protein; Provisional
Probab=100.00 E-value=5.4e-34 Score=262.32 Aligned_cols=202 Identities=17% Similarity=0.234 Sum_probs=163.4
Q ss_pred HHHHHHHHHHHhCCCCCcc-h--HHHHHHHHHHHHhCCCCeEee--cCCceEEEEEcCCCCcEEEEEeccCCCCCCCCCC
Q 024905 38 DWLVSVRRQIHENPELLFE-E--HNTSALIRRELDKLGIPYAYP--VAKTGIVAQIGSGSRPVVVLRADMDALPLQELVE 112 (260)
Q Consensus 38 ~~~~~~~~~l~~ips~s~~-e--~~~~~~l~~~l~~~G~~~~~~--~~~~nlia~~~~~~~~~i~l~~H~DtVp~~~~~~ 112 (260)
+++++++++|++|||++++ | .++++||.++|+++|++++.. .+++|++++++++++|+|+|+||+||||+++.+.
T Consensus 2 ~~~~~~l~eLV~i~S~s~~~~~~~~~a~~l~~~l~~~G~~ve~~~~~~~~~lia~~~~~~~~~vll~gH~DvVp~~~~~~ 81 (436)
T PRK06446 2 DEELYTLIEFLKKPSISATGEGIEETANYLKDTMEKLGIKANIERTKGHPVVYGEINVGAKKTLLIYNHYDVQPVDPLSE 81 (436)
T ss_pred hhHHHHHHHHhCCCCCCCCcHhHHHHHHHHHHHHHHCCCeEEEEecCCCCEEEEEecCCCCCEEEEEecccCCCCCcccc
Confidence 4678899999999999964 3 799999999999999998653 3678999999654468999999999999977677
Q ss_pred Ccccc----ccCCccccCC---CcHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC-CChHHHHHcC--CCCCCceE
Q 024905 113 WEHKS----KIDGKMHACG---HDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEG--ALGDSEAI 182 (260)
Q Consensus 113 w~~~~----~~~g~~~g~G---~kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g-~G~~~~~~~g--~~~~~d~~ 182 (260)
|.++| ++||++|||| |||++++++.|++.+++.+ .++++|.|+|++|||.| .|+++++++. .+ ++|++
T Consensus 82 W~~~Pf~~~~~dg~lyGRGa~DmKgglaa~l~A~~~l~~~~-~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~~-~~d~v 159 (436)
T PRK06446 82 WKRDPFSATIENGRIYARGASDNKGTLMARLFAIKHLIDKH-KLNVNVKFLYEGEEEIGSPNLEDFIEKNKNKL-KADSV 159 (436)
T ss_pred ccCCCCceEEECCEEEEEeccCCcHHHHHHHHHHHHHHHcC-CCCCCEEEEEEcccccCCHhHHHHHHHHHHHh-CCCEE
Confidence 86543 5699999998 4999999999999887654 57889999999999987 6888888762 23 46887
Q ss_pred EEecccCCCCCcceEeecccccceeeEEEEEEEc--cCCCcCCCCCCcCHHHHHHHHHHHHHHH
Q 024905 183 FGMHIDVGIPTGSIASISGPHLAATSVFNVKVEG--RGGHAAMPHSTIDPILTASSVILALQQL 244 (260)
Q Consensus 183 i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~v~G--~~~Hs~~p~~g~nAi~~~~~~i~~l~~~ 244 (260)
++ ++....+.+.-.+ ..+++|..|++++++| +++|||.|+.|.|||..+++++.+|++.
T Consensus 160 i~-E~~~~~~~~~~~i--~~~~kG~~~~~l~v~G~~~~~Hss~p~~g~NAi~~~~~~l~~l~~~ 220 (436)
T PRK06446 160 IM-EGAGLDPKGRPQI--VLGVKGLLYVELVLRTGTKDLHSSNAPIVRNPAWDLVKLLSTLVDG 220 (436)
T ss_pred EE-CCCCccCCCCeEE--EEecCeEEEEEEEEEeCCCCCCCCCCccCCCHHHHHHHHHHhhCCC
Confidence 75 3322113332112 2347999999999998 9999999999999999999999999864
No 27
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=100.00 E-value=1.9e-33 Score=255.97 Aligned_cols=206 Identities=18% Similarity=0.206 Sum_probs=167.3
Q ss_pred hHHHHHHHHHHHHhCCCCCcc--hHHHHHHHHHHHHhCCCCeEee---cCCceEEEEEcCC-C-CcEEEEEeccCCCCCC
Q 024905 36 DKDWLVSVRRQIHENPELLFE--EHNTSALIRRELDKLGIPYAYP---VAKTGIVAQIGSG-S-RPVVVLRADMDALPLQ 108 (260)
Q Consensus 36 ~~~~~~~~~~~l~~ips~s~~--e~~~~~~l~~~l~~~G~~~~~~---~~~~nlia~~~~~-~-~~~i~l~~H~DtVp~~ 108 (260)
..+++++++++|++|||++++ |.++++|+.++|+++|++++.. ++++|++++++++ + .|+|+|+|||||||++
T Consensus 7 ~~~~~~~~l~~lv~ipS~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~g~~~l~~~~~g~~~~~~~i~l~~H~DvVp~~ 86 (400)
T TIGR01880 7 EEDIAVTRFREYLRINTVQPNPDYAACVDFLIKQADELGLARKTIEFVPGKPVVVLTWPGSNPELPSILLNSHTDVVPVF 86 (400)
T ss_pred chHHHHHHHHHHhccCccCCCccHHHHHHHHHHHHHhCCCceeEEEecCCceeEEEEEecCCCCCCeEEEEcccccCCCC
Confidence 357788999999999999764 6899999999999999987542 3578999999654 3 3899999999999986
Q ss_pred CCCCCc---ccc-c-cCCccccCCC---cHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC--CChHHHHHcCCCCC
Q 024905 109 ELVEWE---HKS-K-IDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG--AGAFHMIKEGALGD 178 (260)
Q Consensus 109 ~~~~w~---~~~-~-~~g~~~g~G~---kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g--~G~~~~~~~g~~~~ 178 (260)
+ ..|. |.+ + +||++||||+ |+++++++.|++.|++.+.+++++|.|+|++|||.| .|++++++++.+.+
T Consensus 87 ~-~~W~~~Pf~~~~~~dg~iyGrG~~D~K~~~aa~l~a~~~l~~~~~~~~~~v~l~~~~dEE~g~~~G~~~~~~~~~~~~ 165 (400)
T TIGR01880 87 R-EHWTHPPFSAFKDEDGNIYARGAQDMKCVGVQYLEAVRNLKASGFKFKRTIHISFVPDEEIGGHDGMEKFAKTDEFKA 165 (400)
T ss_pred c-ccCccCCccceecCCCeEEEcccccccHHHHHHHHHHHHHHHcCCCCCceEEEEEeCCcccCcHhHHHHHHHhhhccC
Confidence 5 4575 444 3 5899999986 899999999999999988788999999999999986 49999998865555
Q ss_pred CceEEEecccCCCCCcceEeecccccceeeEEEEEEEccCCCcCCCCCCcCHHHHHHHHHHHHHHHH
Q 024905 179 SEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLI 245 (260)
Q Consensus 179 ~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~ 245 (260)
.|..++++....+|++.. ..+.+++|..+++|+++|+++|++.|. +.||+..+++++..|+++.
T Consensus 166 ~~~~~~~d~g~~~~~~~~--~i~~~~kG~~~~~l~v~G~~~Hs~~~~-~~nai~~l~~~i~~l~~~~ 229 (400)
T TIGR01880 166 LNLGFALDEGLASPDDVY--RVFYAERVPWWVVVTAPGNPGHGSKLM-ENTAMEKLEKSVESIRRFR 229 (400)
T ss_pred CceEEEEcCCCccccccc--ceeEEeeEEEEEEEEEecCCCCCCCCC-CCCHHHHHHHHHHHHHHhh
Confidence 677777643222344422 223468999999999999999999864 4799999999999887753
No 28
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=100.00 E-value=8e-34 Score=256.24 Aligned_cols=196 Identities=19% Similarity=0.226 Sum_probs=157.2
Q ss_pred HHHHHHhCCCCCcchHHHHHHHHHHHHhCCCC-eEeecCCceEEEEEcCCCCcEEEEEeccCCCCCCC--CCCCccc---
Q 024905 43 VRRQIHENPELLFEEHNTSALIRRELDKLGIP-YAYPVAKTGIVAQIGSGSRPVVVLRADMDALPLQE--LVEWEHK--- 116 (260)
Q Consensus 43 ~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~-~~~~~~~~nlia~~~~~~~~~i~l~~H~DtVp~~~--~~~w~~~--- 116 (260)
++++|++|||+|++|.++++||.++|+++|++ ++......|++++++++++|+|+|+||+||||+++ +..|.++
T Consensus 1 ll~~Lv~ipS~s~~e~~~~~~i~~~l~~~g~~~~~~~~~~~nvva~~~~~~~~~l~l~gH~DtVp~~~~~~~~W~~~p~~ 80 (373)
T TIGR01900 1 LLQQIMDIFSPSDHEGPIADEIEAALNNLELEGLEVFRFGDNVLARTDFGKASRVILAGHIDTVPIADNFPPKWLEPGDS 80 (373)
T ss_pred ChHHHhCCCCCCchHHHHHHHHHHHHhhccccCceEEEECCEEEEecCCCCCCeEEEeCccccccCCCCChhhhccCccc
Confidence 47899999999999999999999999998653 22212245999998654468999999999999864 2457532
Q ss_pred ---------cccCCccccCCC---cHHHHHHHHHHHHHHh--ccCCCCceEEEEeecCCCCC---CChHHHHHcCC-CCC
Q 024905 117 ---------SKIDGKMHACGH---DVHTTMLLGAAKLIHQ--RKDKLKGTVRILFQPAEEGG---AGAFHMIKEGA-LGD 178 (260)
Q Consensus 117 ---------~~~~g~~~g~G~---kg~~a~~l~a~~~L~~--~~~~~~~~i~~~~~~dEE~g---~G~~~~~~~g~-~~~ 178 (260)
.++||++||||+ |++++++|.|++.|++ .+..++++|.|+|++|||.+ .|++.++++.. +.+
T Consensus 81 ~~~~~~~~~~~~~g~lyGRGa~DmKgg~aa~l~a~~~l~~~~~~~~~~~~i~~~~~~dEE~~~~~~G~~~~~~~~~~~~~ 160 (373)
T TIGR01900 81 LIREEIAHAHPEDGILWGCGATDMKAGDAVMLHLAATLDGRAPETELKHDLTLIAYDCEEVAAEKNGLGHIRDAHPDWLA 160 (373)
T ss_pred ccccccccccccCCEEEecCchhhhHHHHHHHHHHHHHhhhccccCCCCCEEEEEEecccccCCCCCHHHHHHhCccccc
Confidence 356899999985 8999999999999954 34467899999999999975 49999987632 124
Q ss_pred CceEEEecccCCCCCcceEeecccccceeeEEEEEEEccCCCcCCCCCCcCHHHHHHHHHHHHHHHHh
Q 024905 179 SEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLIS 246 (260)
Q Consensus 179 ~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~ 246 (260)
+|++|+.+ |++. .+..+++|..+++|+++|+++|+|.|+.|.|||..+++++..|+++..
T Consensus 161 ~d~~iv~E-----pt~~---~i~~g~~G~~~~~i~v~G~~~H~s~p~~g~NAi~~~~~~i~~l~~l~~ 220 (373)
T TIGR01900 161 ADFAIIGE-----PTGG---GIEAGCNGNIRFDVTAHGVAAHSARAWLGDNAIHKAADIINKLAAYEA 220 (373)
T ss_pred CCEEEEEC-----CCCC---cccccceeeEEEEEEEEeeccccCCCCCCCCHHHHHHHHHHHHHHhhc
Confidence 68888754 3332 122457899999999999999999999999999999999999988754
No 29
>PRK09104 hypothetical protein; Validated
Probab=100.00 E-value=2.6e-33 Score=259.72 Aligned_cols=216 Identities=16% Similarity=0.179 Sum_probs=174.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhCCCCCcch------HHHHHHHHHHHHhCCCCeEee--cCCceEEEEEcCC--CCcE
Q 024905 26 TNQVMISAQQDKDWLVSVRRQIHENPELLFEE------HNTSALIRRELDKLGIPYAYP--VAKTGIVAQIGSG--SRPV 95 (260)
Q Consensus 26 ~~~i~~~i~~~~~~~~~~~~~l~~ips~s~~e------~~~~~~l~~~l~~~G~~~~~~--~~~~nlia~~~~~--~~~~ 95 (260)
..++.++++.+++++++++++|++|||+|+++ .++++||.++|+++||+++.. .+++|+++++++. .+|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~L~~lv~i~Svs~~~~~~~~~~~~~~~l~~~l~~~G~~v~~~~~~~~~~l~a~~~g~~~~~~~ 84 (464)
T PRK09104 5 LDPVLDHIDANLDASLERLFALLRIPSISTDPAYAADCRKAADWLVADLASLGFEASVRDTPGHPMVVAHHEGPTGDAPH 84 (464)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHHHHHHHHHCCCeEEEEecCCCCEEEEEecCCCCCCCE
Confidence 46788999999999999999999999999753 688999999999999998752 3578999999753 3599
Q ss_pred EEEEeccCCCCCCCCCCCcccc----ccCC-----ccccCCC---cHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCC
Q 024905 96 VVLRADMDALPLQELVEWEHKS----KIDG-----KMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEG 163 (260)
Q Consensus 96 i~l~~H~DtVp~~~~~~w~~~~----~~~g-----~~~g~G~---kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~ 163 (260)
|+|+||+||||+++.+.|.++| ++++ ++||||+ ||++++++.|++.|++.+.+++++|.|++++|||.
T Consensus 85 lll~gH~DvVp~~~~~~W~~~Pf~~~~~~~~~~~~~lyGRG~~D~Kg~laa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~ 164 (464)
T PRK09104 85 VLFYGHYDVQPVDPLDLWESPPFEPRIKETPDGRKVIVARGASDDKGQLMTFVEACRAWKAVTGSLPVRVTILFEGEEES 164 (464)
T ss_pred EEEEecccCCCCCCcccCCCCCCcceEecCcCCcceEEEecccCCcHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccc
Confidence 9999999999998767796553 3343 5999984 99999999999999987667888999999999998
Q ss_pred C-CChHHHHHcCC-CCCCceEEEecccCCCCCcceEeecccccceeeEEEEEEEc--cCCCcCC-CCCCcCHHHHHHHHH
Q 024905 164 G-AGAFHMIKEGA-LGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEG--RGGHAAM-PHSTIDPILTASSVI 238 (260)
Q Consensus 164 g-~G~~~~~~~g~-~~~~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~v~G--~~~Hs~~-p~~g~nAi~~~~~~i 238 (260)
| .|.++++.+.. ...+|++|+.++....+.. . .+..+++|..+++|+++| +++|||. |+.|.||+..+++++
T Consensus 165 g~~g~~~~l~~~~~~~~~d~~iv~E~~~~~~~~-~--~i~~~~kG~~~~~l~v~g~~~~~Hss~~~~~g~nai~~~~~~l 241 (464)
T PRK09104 165 GSPSLVPFLEANAEELKADVALVCDTGMWDRET-P--AITTSLRGLVGEEVTITAADRDLHSGLFGGAAANPIRVLTRIL 241 (464)
T ss_pred CCccHHHHHHhhHHhcCCCEEEEeCCCCCCCCC-e--EEEeecCCeEEEEEEEEeCCCCccccccCCccCCHHHHHHHHH
Confidence 7 77888776531 1146899986532111111 1 122458999999999999 6899995 788999999999999
Q ss_pred HHHHHH
Q 024905 239 LALQQL 244 (260)
Q Consensus 239 ~~l~~~ 244 (260)
.+|++.
T Consensus 242 ~~l~~~ 247 (464)
T PRK09104 242 AGLHDE 247 (464)
T ss_pred HhccCC
Confidence 999763
No 30
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=100.00 E-value=7.7e-33 Score=247.71 Aligned_cols=189 Identities=16% Similarity=0.137 Sum_probs=156.4
Q ss_pred HHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhCCCCeEeecCCceEEEEEcCCCCcEEEEEeccCCCCCCCCCCCccc
Q 024905 37 KDWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVVLRADMDALPLQELVEWEHK 116 (260)
Q Consensus 37 ~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nlia~~~~~~~~~i~l~~H~DtVp~~~~~~w~~~ 116 (260)
.+++++++++|++|||++++|.++++|+.++|+++||+++. +..+|++++++++ +|+|+|+||+||||... |+
T Consensus 5 ~~~~~~~l~~Lv~i~s~s~~e~~~~~~l~~~l~~~G~~~~~-~~~~n~i~~~~~~-~~~l~~~~H~DtVp~~~----p~- 77 (348)
T PRK04443 5 ALEARELLKGLVEIPSPSGEEAAAAEFLVEFMESHGREAWV-DEAGNARGPAGDG-PPLVLLLGHIDTVPGDI----PV- 77 (348)
T ss_pred hHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHcCCEEEE-cCCCcEEEEcCCC-CCEEEEEeeccccCCCC----Cc-
Confidence 36789999999999999999999999999999999999876 3568999998543 58999999999999532 33
Q ss_pred cccCCccccCC---CcHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC-CChHHHHHcCCCCCCceEEEecccCCCC
Q 024905 117 SKIDGKMHACG---HDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEGALGDSEAIFGMHIDVGIP 192 (260)
Q Consensus 117 ~~~~g~~~g~G---~kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g-~G~~~~~~~g~~~~~d~~i~~~~~~~~~ 192 (260)
.++||++|||| |||++++++.|+++| +.+++++|.|++++|||.| .|...++.++. .+|++|+.+ |
T Consensus 78 ~~~~g~iyGrG~~D~Kg~~aa~l~A~~~l---~~~~~~~i~~~~~~dEE~g~~~~~~~l~~~~--~~d~~iv~E-----p 147 (348)
T PRK04443 78 RVEDGVLWGRGSVDAKGPLAAFAAAAARL---EALVRARVSFVGAVEEEAPSSGGARLVADRE--RPDAVIIGE-----P 147 (348)
T ss_pred EeeCCeEEeecccccccHHHHHHHHHHHh---cccCCCCEEEEEEcccccCChhHHHHHHhcc--CCCEEEEeC-----C
Confidence 25689999998 499999999999998 3468899999999999987 55566666554 479998854 4
Q ss_pred CcceEeecccccceeeEEEEEEEccCCCcCCCCCCcCHHHHHHHHHHHHHHHHh
Q 024905 193 TGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLIS 246 (260)
Q Consensus 193 ~~~~~~~~g~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~ 246 (260)
++...+ ..+++|..+++|+++|+++|||.| |+|||..+++++..|+++..
T Consensus 148 t~~~~i--~~~~kG~~~~~l~~~G~~~Hss~~--g~NAi~~~~~~l~~l~~~~~ 197 (348)
T PRK04443 148 SGWDGI--TLGYKGRLLVTYVATSESFHSAGP--EPNAAEDAIEWWLAVEAWFE 197 (348)
T ss_pred CCccce--eeecccEEEEEEEEEeCCCccCCC--CCCHHHHHHHHHHHHHHHHh
Confidence 442112 234789999999999999999987 79999999999999988754
No 31
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=1.4e-32 Score=246.08 Aligned_cols=195 Identities=17% Similarity=0.224 Sum_probs=160.6
Q ss_pred hHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhC-CCCeEeecCCceEEEEEcCCCCcEEEEEeccCCCCCCCCCCCc
Q 024905 36 DKDWLVSVRRQIHENPELLFEEHNTSALIRRELDKL-GIPYAYPVAKTGIVAQIGSGSRPVVVLRADMDALPLQELVEWE 114 (260)
Q Consensus 36 ~~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~-G~~~~~~~~~~nlia~~~~~~~~~i~l~~H~DtVp~~~~~~w~ 114 (260)
+.+++++++++|++|||+|++|.++++||.++|+++ |+++.. ...|++++++++.+++|+|+||+||||+.+ .++
T Consensus 5 ~~~~~~~~l~~li~ips~s~~e~~~~~~l~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~i~l~~H~Dtvp~~~--~~~ 80 (352)
T PRK13007 5 LAADLAELTAALVDIPSVSGDEKALADAVEAALRALPHLEVIR--HGNSVVARTDLGRPSRVVLAGHLDTVPVAD--NLP 80 (352)
T ss_pred hHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHhCcCceEEe--cCCeEEEEccCCCCCeEEEEccccccCCCC--CCC
Confidence 457889999999999999999999999999999996 887764 357999998655457899999999999865 233
Q ss_pred cccccCCccccCCC---cHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC---CChHHHHHcC-CCCCCceEEEecc
Q 024905 115 HKSKIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG---AGAFHMIKEG-ALGDSEAIFGMHI 187 (260)
Q Consensus 115 ~~~~~~g~~~g~G~---kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g---~G~~~~~~~g-~~~~~d~~i~~~~ 187 (260)
+. ++||++||||+ |+++++++.|++.|. ++++++.++|++|||.+ .|++.++++. .+.++|++++.++
T Consensus 81 ~~-~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~----~~~~~i~~~~~~~EE~~~~~~G~~~~~~~~~~~~~~d~~i~~ep 155 (352)
T PRK13007 81 SR-REGDRLYGCGASDMKSGLAVMLHLAATLA----EPAHDLTLVFYDCEEVEAEANGLGRLAREHPEWLAGDFAILLEP 155 (352)
T ss_pred cc-eeCCEEEccCcccccHHHHHHHHHHHHhh----ccCCCeEEEEEecccccCCcccHHHHHHhcccccCCCEEEEecC
Confidence 32 56899999996 899999999999993 36789999999999975 4888888653 2235799998653
Q ss_pred cCCCCCcceEeecccccceeeEEEEEEEccCCCcCCCCCCcCHHHHHHHHHHHHHHHHhh
Q 024905 188 DVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISR 247 (260)
Q Consensus 188 ~~~~~~~~~~~~~g~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~ 247 (260)
++.. + ..+++|..+++|+++|+++|||.|+.|+||+..+++++.+++++..+
T Consensus 156 -----~~~~-i--~~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~ 207 (352)
T PRK13007 156 -----TDGV-I--EAGCQGTLRVTVTFHGRRAHSARSWLGENAIHKAAPVLARLAAYEPR 207 (352)
T ss_pred -----CCCc-e--EeeccceEEEEEEEEecccccCCCccCcCHHHHHHHHHHHHHHhccc
Confidence 2221 1 23478999999999999999999999999999999999999887654
No 32
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=1.8e-32 Score=249.03 Aligned_cols=198 Identities=22% Similarity=0.295 Sum_probs=162.7
Q ss_pred HhhHHHHHHHHHHHHhCCCCC---cchHHHHHHHHHHHHhCCCCeEeec---C--------CceEEEEEcCCCCcEEEEE
Q 024905 34 QQDKDWLVSVRRQIHENPELL---FEEHNTSALIRRELDKLGIPYAYPV---A--------KTGIVAQIGSGSRPVVVLR 99 (260)
Q Consensus 34 ~~~~~~~~~~~~~l~~ips~s---~~e~~~~~~l~~~l~~~G~~~~~~~---~--------~~nlia~~~~~~~~~i~l~ 99 (260)
+.+.+++++++++|++|||+| ++|.++++||.++|+++|++++... . ++|+++..+++ +|+|+|+
T Consensus 2 ~~~~~~~~~~l~~lv~i~S~s~~~~~~~~~a~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ill~ 80 (394)
T PRK08651 2 EAMMFDIVEFLKDLIKIPTVNPPGENYEEIAEFLRDTLEELGFSTEIIEVPNEYVKKHDGPRPNLIARRGSG-NPHLHFN 80 (394)
T ss_pred chhHHHHHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHHHcCCeEEEEecCccccccccCCcceEEEEeCCC-CceEEEE
Confidence 346688999999999999998 5788999999999999999886531 1 24678765444 4899999
Q ss_pred eccCCCCCCCCCCC---cccc-ccCCccccCCC---cHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC-CChHHHH
Q 024905 100 ADMDALPLQELVEW---EHKS-KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMI 171 (260)
Q Consensus 100 ~H~DtVp~~~~~~w---~~~~-~~~g~~~g~G~---kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g-~G~~~~~ 171 (260)
||+||||+++.. | ||.+ +++|++||||+ |++++++|++++.|++.+ +++|.|+|++|||.| .|+++++
T Consensus 81 ~HlDtvp~~~~~-~~~~Pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~---~~~v~~~~~~~EE~g~~G~~~~~ 156 (394)
T PRK08651 81 GHYDVVPPGEGW-SVNVPFEPKVKDGKVYGRGASDMKGGIAALLAAFERLDPAG---DGNIELAIVPDEETGGTGTGYLV 156 (394)
T ss_pred eeeeeecCCCCc-cccCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHhcC---CCCEEEEEecCccccchhHHHHH
Confidence 999999986532 4 4554 46999999996 999999999999998764 789999999999987 6999999
Q ss_pred HcCCCCCCceEEEecccCCCCCc--ceEeecccccceeeEEEEEEEccCCCcCCCCCCcCHHHHHHHHHHHHHHHHh
Q 024905 172 KEGALGDSEAIFGMHIDVGIPTG--SIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLIS 246 (260)
Q Consensus 172 ~~g~~~~~d~~i~~~~~~~~~~~--~~~~~~g~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~ 246 (260)
+++.. ++|++++.+ |++ .+. .+++|..+++|+++|+++|++.|+.|+|||..+++++.+|++...
T Consensus 157 ~~~~~-~~d~~i~~~-----~~~~~~i~----~~~~G~~~~~i~v~G~~~H~~~p~~g~nAi~~~~~~i~~l~~~~~ 223 (394)
T PRK08651 157 EEGKV-TPDYVIVGE-----PSGLDNIC----IGHRGLVWGVVKVYGKQAHASTPWLGINAFEAAAKIAERLKSSLS 223 (394)
T ss_pred hccCC-CCCEEEEec-----CCCCCceE----EecccEEEEEEEEEEeccccCCCccccCHHHHHHHHHHHHHHHHH
Confidence 88654 368888754 333 232 247899999999999999999999999999999999999987643
No 33
>PRK07906 hypothetical protein; Provisional
Probab=100.00 E-value=1.4e-32 Score=252.34 Aligned_cols=201 Identities=14% Similarity=0.295 Sum_probs=158.9
Q ss_pred HHHHHHHHhCCCCC------cchHHHHHHHHHHHHhCCCCeEee---cCCceEEEEEcCC-C-CcEEEEEeccCCCCCCC
Q 024905 41 VSVRRQIHENPELL------FEEHNTSALIRRELDKLGIPYAYP---VAKTGIVAQIGSG-S-RPVVVLRADMDALPLQE 109 (260)
Q Consensus 41 ~~~~~~l~~ips~s------~~e~~~~~~l~~~l~~~G~~~~~~---~~~~nlia~~~~~-~-~~~i~l~~H~DtVp~~~ 109 (260)
++++++|++|||++ ++|.++++||.++|+++|++++.. ++++|+++++++. + .|+|+|+||+||||+++
T Consensus 2 ~~ll~~Lv~i~S~s~~~~~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nv~~~~~g~~~~~~~lll~~H~DtVp~~~ 81 (426)
T PRK07906 2 VDLCSELIRIDTTNTGDGTGKGEREAAEYVAEKLAEVGLEPTYLESAPGRANVVARLPGADPSRPALLVHGHLDVVPAEA 81 (426)
T ss_pred hHHHHHHhcccccCCCCCCCchHHHHHHHHHHHHHhCCCCeEEeecCCCceEEEEEEeCCCCCCCcEEEEcccccCCCCc
Confidence 67899999999998 679999999999999999998764 2578999999654 3 48999999999999854
Q ss_pred CCCCcccc----ccCCccccCCC---cHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC--CChHHHHHcC--CCCC
Q 024905 110 LVEWEHKS----KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG--AGAFHMIKEG--ALGD 178 (260)
Q Consensus 110 ~~~w~~~~----~~~g~~~g~G~---kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g--~G~~~~~~~g--~~~~ 178 (260)
..|.++| ++||++||||+ |++++++++|+++|++.+..++++|.|+|++|||.| .|++.++++. .+..
T Consensus 82 -~~W~~~Pf~~~~~dg~iyGrG~~D~Kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~~g~~~l~~~~~~~~~~ 160 (426)
T PRK07906 82 -ADWSVHPFSGEIRDGYVWGRGAVDMKDMDAMMLAVVRHLARTGRRPPRDLVFAFVADEEAGGTYGAHWLVDNHPELFEG 160 (426)
T ss_pred -ccCccCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEEEEEecCcccchhhhHHHHHHHHHHhccc
Confidence 4686553 56999999984 999999999999999888788999999999999986 4899988753 2223
Q ss_pred CceEEEecccC---CCCCcceEeecccccceeeEEEEEEEccCCCcCCCCCCcCHHHHHHHHHHHHHHH
Q 024905 179 SEAIFGMHIDV---GIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQL 244 (260)
Q Consensus 179 ~d~~i~~~~~~---~~~~~~~~~~~g~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~ 244 (260)
.+.++. ++.. ..+.......+..+++|..+++|+++|+++|+|.|+. +|||..++++|.+|+++
T Consensus 161 ~~~ii~-e~~~~~~~~~~~~~~~~i~~~~kG~~~~~v~v~G~~~Hss~p~~-~nAi~~~~~~l~~l~~~ 227 (426)
T PRK07906 161 VTEAIS-EVGGFSLTVPGRDRLYLIETAEKGLAWMRLTARGRAGHGSMVND-DNAVTRLAEAVARIGRH 227 (426)
T ss_pred hheEEE-CCCceeeccCCCccEEEEEeccceEEEEEEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHHhC
Confidence 334442 2211 0011100112335589999999999999999999864 99999999999999754
No 34
>PRK08652 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=4.9e-32 Score=242.01 Aligned_cols=188 Identities=18% Similarity=0.165 Sum_probs=155.2
Q ss_pred HHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhCCCCeEeec--CCceEEEEEcCCCCcEEEEEeccCCCCCCCCCCCcc
Q 024905 38 DWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPV--AKTGIVAQIGSGSRPVVVLRADMDALPLQELVEWEH 115 (260)
Q Consensus 38 ~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~--~~~nlia~~~~~~~~~i~l~~H~DtVp~~~~~~w~~ 115 (260)
+++++++++|++|||+|++|.++++||.++|+++|++++... +..|+++ +++|+|+|+||+||||+..+ +
T Consensus 2 ~~~~~~~~~lv~ips~s~~e~~~~~~l~~~l~~~G~~v~~~~~~~~~~~~~----~~~~~i~l~~H~D~vp~~~~---~- 73 (347)
T PRK08652 2 ERAKELLKQLVKIPSPSGQEDEIALHIMEFLESLGYDVHIESDGEVINIVV----NSKAELFVEVHYDTVPVRAE---F- 73 (347)
T ss_pred hhHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCEEEEEecCceeEEEc----CCCCEEEEEccccccCCCCC---C-
Confidence 567899999999999999999999999999999999987632 2466765 33589999999999997431 1
Q ss_pred ccccCCccccCC---CcHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC-CChHHHHHcCCCCCCceEEEecccCCC
Q 024905 116 KSKIDGKMHACG---HDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEGALGDSEAIFGMHIDVGI 191 (260)
Q Consensus 116 ~~~~~g~~~g~G---~kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g-~G~~~~~~~g~~~~~d~~i~~~~~~~~ 191 (260)
..+||++|||| ||+++++++.|++.|++.. .+++|.|+|++|||.| .|+++++++ . ..|++++.++.
T Consensus 74 -~~~~g~iyGrG~~D~Kg~~a~~l~a~~~l~~~~--~~~~v~~~~~~dEE~g~~G~~~~~~~--~-~~d~~i~~ep~--- 144 (347)
T PRK08652 74 -FVDGVYVYGTGACDAKGGVAAILLALEELGKEF--EDLNVGIAFVSDEEEGGRGSALFAER--Y-RPKMAIVLEPT--- 144 (347)
T ss_pred -EEECCEEEeccchhhhHHHHHHHHHHHHHhhcc--cCCCEEEEEecCcccCChhHHHHHHh--c-CCCEEEEecCC---
Confidence 24689999987 4999999999999998543 4679999999999976 899999876 2 34888876532
Q ss_pred CCcceEeecccccceeeEEEEEEEccCCCcCCCCCCcCHHHHHHHHHHHHHHHHhh
Q 024905 192 PTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISR 247 (260)
Q Consensus 192 ~~~~~~~~~g~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~ 247 (260)
.+.+ ..+++|..+++|+++|+++|++.|+.|.|||..+++++.+|+++...
T Consensus 145 -~~~i----~~~~~g~~~~~i~~~G~~~H~s~p~~g~nAi~~~a~~i~~l~~~~~~ 195 (347)
T PRK08652 145 -DLKV----AIAHYGNLEAYVEVKGKPSHGACPESGVNAIEKAFEMLEKLKELLKA 195 (347)
T ss_pred -CCce----eeecccEEEEEEEEEeeecccCCCCcCcCHHHHHHHHHHHHHHHHHh
Confidence 1222 23578999999999999999999999999999999999999987654
No 35
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=100.00 E-value=3.1e-32 Score=252.34 Aligned_cols=205 Identities=14% Similarity=0.094 Sum_probs=157.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHhCCCCCc------------chHHHHHHHHHHHHhCCCCeEeecCCceEEEEEcC-CCCcE
Q 024905 29 VMISAQQDKDWLVSVRRQIHENPELLF------------EEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGS-GSRPV 95 (260)
Q Consensus 29 i~~~i~~~~~~~~~~~~~l~~ips~s~------------~e~~~~~~l~~~l~~~G~~~~~~~~~~nlia~~~~-~~~~~ 95 (260)
+.++++++++++++++++|++|||++. ++.++++|+.++|+++||+++..+ |.++.+.. +++|+
T Consensus 4 ~~~~i~~~~~~~~~~l~~lv~ipS~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~---~~~~~~~~~~~~~~ 80 (466)
T TIGR01886 4 FKEEVEARKDALLEDLEELLRIDSSEDLENATEEYPFGPGPVDALTKFLSFAERDGFTTKNFD---NYAGHVEYGAGDER 80 (466)
T ss_pred HHHHHHHhHHHHHHHHHHHhCCCCcCCCCCCCccCCCChhHHHHHHHHHHHHHHCCCeEEEec---CCceeEEecCCCCE
Confidence 567788899999999999999999964 356789999999999999987543 34344322 34589
Q ss_pred EEEEeccCCCCCCCCCCCccc---c-ccCCccccCCC---cHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC-CCh
Q 024905 96 VVLRADMDALPLQELVEWEHK---S-KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGA 167 (260)
Q Consensus 96 i~l~~H~DtVp~~~~~~w~~~---~-~~~g~~~g~G~---kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g-~G~ 167 (260)
|+|+||+||||+++ .|.++ + ++||++||||+ ||++++++.|+++|++.+.+++++|.|++++|||.| .|+
T Consensus 81 l~~~gH~DvVp~~~--~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~~a~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~ 158 (466)
T TIGR01886 81 LGIIGHMDVVPAGE--GWTRDPFEPEIDEGRIYARGASDDKGPSLAAYYAMKILKELGLPPSKKIRFVVGTNEETGWVDM 158 (466)
T ss_pred EEEEeecccCCCCC--CCcCCCCCeEEECCEEEecCccccchHHHHHHHHHHHHHHhCCCCCCCEEEEEECccccCcccH
Confidence 99999999999874 58544 3 57999999984 999999999999999988889999999999999998 799
Q ss_pred HHHHHcCCCCCCceEEEeccc----CCCCCcce---------------------------------Eee-----------
Q 024905 168 FHMIKEGALGDSEAIFGMHID----VGIPTGSI---------------------------------ASI----------- 199 (260)
Q Consensus 168 ~~~~~~g~~~~~d~~i~~~~~----~~~~~~~~---------------------------------~~~----------- 199 (260)
+++++++. .+|++++.+.+ .+++.... .+.
T Consensus 159 ~~~~~~~~--~~d~~~~~d~~~~~~~ge~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~i~~~~~~~~~~~~ 236 (466)
T TIGR01886 159 DYYFKHEE--TPDFGFSPDAEFPIINGEKGNFTLELSFKGDNKGDYVLDSFKAGLAENMVPQVARAVISGPDAEALKAAY 236 (466)
T ss_pred HHHHhcCc--CCCEEEECCCCceeEEEecceEEEEEEEecCCCCceeEEEEEcCCcCCccCCeeEEEEecCCHHHHHHHH
Confidence 99998754 25665442210 01111100 000
Q ss_pred -cccccceee---------EEEEEEEccCCCcCCCCCCcCHHHHHHHHHHH
Q 024905 200 -SGPHLAATS---------VFNVKVEGRGGHAAMPHSTIDPILTASSVILA 240 (260)
Q Consensus 200 -~g~~~~G~~---------~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~ 240 (260)
....++|.. |++|+++|+++|||.|+.|+|||..|++++..
T Consensus 237 ~~~~~~kg~~~~~~~~~~~~~~i~v~G~~aH~s~P~~G~NAi~~~~~~l~~ 287 (466)
T TIGR01886 237 ESFLADKASLDGSFEINDESATIVLIGKGAHGAAPQVGINSATFLALFLNQ 287 (466)
T ss_pred HHHHhhccCceEEEEEeCCEEEEEEEeeEcccCCCCCCcCHHHHHHHHHHh
Confidence 001244433 79999999999999999999999999998887
No 36
>PRK07318 dipeptidase PepV; Reviewed
Probab=100.00 E-value=3.2e-32 Score=252.53 Aligned_cols=209 Identities=15% Similarity=0.162 Sum_probs=160.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhCCCCCcc------------hHHHHHHHHHHHHhCCCCeEeecCCceEEEEEc-CCCCc
Q 024905 28 QVMISAQQDKDWLVSVRRQIHENPELLFE------------EHNTSALIRRELDKLGIPYAYPVAKTGIVAQIG-SGSRP 94 (260)
Q Consensus 28 ~i~~~i~~~~~~~~~~~~~l~~ips~s~~------------e~~~~~~l~~~l~~~G~~~~~~~~~~nlia~~~-~~~~~ 94 (260)
++.++++++.+++++++++|++|||++++ +.++++|+.++|+++||+++.. .|+++++. +.+.|
T Consensus 4 ~~~~~~~~~~~~~~~~l~~lv~i~S~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~G~~~~~~---~n~~~~~~~~~~~~ 80 (466)
T PRK07318 4 DWKKEVEKRKDDLIEDLQELLRINSVRDDSKAKEGAPFGPGPVKALEKFLEIAERDGFKTKNV---DNYAGHIEYGEGEE 80 (466)
T ss_pred hHHHHHHHhHHHHHHHHHHHhccCcccCCcccccCCCCCccHHHHHHHHHHHHHHCCCEEEEe---cCccceEEECCCCC
Confidence 46788899999999999999999999865 5689999999999999998754 36666653 23348
Q ss_pred EEEEEeccCCCCCCCCCCCcccc----ccCCccccCC---CcHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC-CC
Q 024905 95 VVVLRADMDALPLQELVEWEHKS----KIDGKMHACG---HDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AG 166 (260)
Q Consensus 95 ~i~l~~H~DtVp~~~~~~w~~~~----~~~g~~~g~G---~kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g-~G 166 (260)
+|+|+||+||||+++ .|.++| ++||++|||| |||+++++++|++.|++.+.+++++|.|+|++|||.| .|
T Consensus 81 ~l~l~gH~DvVp~~~--~W~~~Pf~~~~~dg~lyGRG~~DmKgg~aa~l~Al~~l~~~g~~~~~~i~l~~~~DEE~g~~G 158 (466)
T PRK07318 81 VLGILGHLDVVPAGD--GWDTDPYEPVIKDGKIYARGTSDDKGPTMAAYYALKIIKELGLPLSKKVRFIVGTDEESGWKC 158 (466)
T ss_pred EEEEEEecCCCCCCC--CCCCCCcceEEECCEEEEcccccCcHHHHHHHHHHHHHHHcCCCCCccEEEEEEcccccCchh
Confidence 999999999999864 585443 4699999998 4999999999999999888778899999999999988 79
Q ss_pred hHHHHHcCCCCCCceE---------EEecc-----------------------cCCCCCcce------Eee---------
Q 024905 167 AFHMIKEGALGDSEAI---------FGMHI-----------------------DVGIPTGSI------ASI--------- 199 (260)
Q Consensus 167 ~~~~~~~g~~~~~d~~---------i~~~~-----------------------~~~~~~~~~------~~~--------- 199 (260)
++++++.... .++. +..++ .++.+++.+ ...
T Consensus 159 ~~~l~~~~~~--~~~~~~~d~~~~vi~~E~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~ 236 (466)
T PRK07318 159 MDYYFEHEEA--PDFGFSPDAEFPIINGEKGITTFDLVHFEGENEGDYVLVSFKSGLRENMVPDSAEAVITGDDLDDLIA 236 (466)
T ss_pred HHHHHHhCCC--CCEEEEeCCCCcEEEEEeeeEEEEEEeccccCCCCceeEEEEcCccceecCcccEEEEecCCHHHHHH
Confidence 9999886421 1221 11111 011111110 000
Q ss_pred ------cccccceee-----EEEEEEEccCCCcCCCCCCcCHHHHHHHHHHHHHH
Q 024905 200 ------SGPHLAATS-----VFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQ 243 (260)
Q Consensus 200 ------~g~~~~G~~-----~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~ 243 (260)
...++||.. |++|+++|+++|++.|+.|+|||..|++++.+|+.
T Consensus 237 ~~~~~~~~~~~kG~~~~~~~~~~i~v~G~aaH~s~p~~g~NAI~~~~~~i~~l~~ 291 (466)
T PRK07318 237 AFEAFLAENGLKGELEEEGGKLVLTVIGKSAHGSTPEKGVNAATYLAKFLNQLNL 291 (466)
T ss_pred HHHHHHhhcCceEEEEecCCEEEEEEEeeEcccCCCccCccHHHHHHHHHHhccC
Confidence 001355644 79999999999999999999999999999999874
No 37
>PRK07205 hypothetical protein; Provisional
Probab=100.00 E-value=7.9e-32 Score=248.52 Aligned_cols=205 Identities=17% Similarity=0.190 Sum_probs=155.2
Q ss_pred HhhHHHHHHHHHHHHhCCCCCcch----------HHHHHHHHHHHHhCCCCeEeecCCceEEEEEcCCCCcEEEEEeccC
Q 024905 34 QQDKDWLVSVRRQIHENPELLFEE----------HNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVVLRADMD 103 (260)
Q Consensus 34 ~~~~~~~~~~~~~l~~ips~s~~e----------~~~~~~l~~~l~~~G~~~~~~~~~~nlia~~~~~~~~~i~l~~H~D 103 (260)
++.++++++++++|++|||+++++ .++++|+.++|+++||+++......+++++++ .++|+|+|+||+|
T Consensus 7 ~~~~~~~~~~l~~lv~i~S~s~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g-~~~~~lll~gH~D 85 (444)
T PRK07205 7 EKVQDACVAAIKTLVSYPSVLNEGENGTPFGQAIQDVLEATLDLCQGLGFKTYLDPKGYYGYAEIG-QGEELLAILCHLD 85 (444)
T ss_pred HHhHHHHHHHHHHHcccccccCCCcCCCCCchhHHHHHHHHHHHHHhCCCEEEEcCCCeEEEEEec-CCCcEEEEEEeec
Confidence 456788999999999999999754 56888999999999999876444456677664 3358999999999
Q ss_pred CCCCCCCCCCccc---c-ccCCccccCCC---cHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC-CChHHHHHcCC
Q 024905 104 ALPLQELVEWEHK---S-KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEGA 175 (260)
Q Consensus 104 tVp~~~~~~w~~~---~-~~~g~~~g~G~---kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g-~G~~~~~~~g~ 175 (260)
|||+++...|.++ + ++||++||||+ ||+++++|.|+++|++.+.+++++|.|+|++|||.| .|++++++...
T Consensus 86 vVp~~~~~~W~~~Pf~~~v~dg~lyGRGa~DmKgglaa~l~Al~~l~~~~~~~~~~i~l~~~~dEE~g~~g~~~~~~~~~ 165 (444)
T PRK07205 86 VVPEGDLSDWQTPPFEAVEKDGCLFGRGTQDDKGPSMAALYAVKALLDAGVQFNKRIRFIFGTDEETLWRCMNRYNEVEE 165 (444)
T ss_pred cCCCCCcccCCCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHHcCCCCCCcEEEEEECCcccCcccHHHHHhCCC
Confidence 9999877789644 3 57999999984 999999999999999988888899999999999987 78888876421
Q ss_pred CC----CCc--------------eEEEecccCCCCCcceEeecc-----------------------ccccee----eEE
Q 024905 176 LG----DSE--------------AIFGMHIDVGIPTGSIASISG-----------------------PHLAAT----SVF 210 (260)
Q Consensus 176 ~~----~~d--------------~~i~~~~~~~~~~~~~~~~~g-----------------------~~~~G~----~~~ 210 (260)
.. .+| +.+. ++|+.......| ..++|. .+.
T Consensus 166 ~~~~~~~~~~~~~v~~~ekG~~~~~i~-----~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~l~~~~~~~g~~~~~~~~ 240 (444)
T PRK07205 166 QATMGFAPDSSFPLTYAEKGLLQAKLV-----GPGSDQLELEVGQAFNVVPAKASYQGPKLEAVKKELDKLGFEYVVKEN 240 (444)
T ss_pred CCCeeECCCCCCceEEEEeceEEEEEE-----eCCccceEEecCCcccccCceeEEEecCHHHHHHHHHhcCceEeecCc
Confidence 10 112 1111 223222111111 011231 244
Q ss_pred EEEEEccCCCcCCCCCCcCHHHHHHHHHHHHHHH
Q 024905 211 NVKVEGRGGHAAMPHSTIDPILTASSVILALQQL 244 (260)
Q Consensus 211 ~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~ 244 (260)
+++++|+++|+|.|+.|+|||..+++++.++++.
T Consensus 241 ~v~v~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~ 274 (444)
T PRK07205 241 EVTVLGKSVHAKDAPQGINAVIRLAKALVVLEPH 274 (444)
T ss_pred EEEEEeEEcccCCCccCcCHHHHHHHHHHhccHH
Confidence 9999999999999999999999999999988653
No 38
>PRK13381 peptidase T; Provisional
Probab=100.00 E-value=1e-31 Score=244.99 Aligned_cols=199 Identities=14% Similarity=0.160 Sum_probs=159.7
Q ss_pred HHHHHHHHHhCCCCCc----------chHHHHHHHHHHHHhCCCCeEeecCCceEEEEEcCC-CC-cEEEEEeccCCCCC
Q 024905 40 LVSVRRQIHENPELLF----------EEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSG-SR-PVVVLRADMDALPL 107 (260)
Q Consensus 40 ~~~~~~~l~~ips~s~----------~e~~~~~~l~~~l~~~G~~~~~~~~~~nlia~~~~~-~~-~~i~l~~H~DtVp~ 107 (260)
+++.+.++++|||+|+ ++.++++||.++|+++|++....++++|+++++++. ++ |+|+|+||+||||+
T Consensus 3 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~nvi~~~~g~~~~~~~lll~~H~D~Vp~ 82 (404)
T PRK13381 3 LTDRFFRYLKVNSQSDAASGTLPSTPGQHELAKLLADELRELGLEDIVIDEHAIVTAKLPGNTPGAPRIGFIAHLDTVDV 82 (404)
T ss_pred HHHHhHhhEEEeccCCCCCCCCcCChhHHHHHHHHHHHHHHcCCCcEEEcCCeEEEEEEecCCCCCCeEEEEEEecCCCc
Confidence 5778999999999997 478999999999999999655456889999999754 44 99999999999998
Q ss_pred CCC--CCC---ccc-------------------c-----ccCCccccCC-------CcHHHHHHHHHHHHHHhccCCCCc
Q 024905 108 QEL--VEW---EHK-------------------S-----KIDGKMHACG-------HDVHTTMLLGAAKLIHQRKDKLKG 151 (260)
Q Consensus 108 ~~~--~~w---~~~-------------------~-----~~~g~~~g~G-------~kg~~a~~l~a~~~L~~~~~~~~~ 151 (260)
++. .+| +|+ + ..+|++|||| ||+++++++.|+++|.+.+ .+++
T Consensus 83 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GrG~~~~g~DmKgg~aa~l~a~~~l~~~~-~~~g 161 (404)
T PRK13381 83 GLSPDIHPQILRFDGGDLCLNAEQGIWLRTAEHPELLNYQGEDIIFSDGTSVLGADNKAAIAVVMTLLENLTENE-VEHG 161 (404)
T ss_pred cCCCCcCcEEEecCCCceecCCccceeechHhChhHHhccCCcEEeCCCccccccccHHHHHHHHHHHHHHHhcC-CCCC
Confidence 652 111 111 0 2467899966 4899999999999998764 4688
Q ss_pred eEEEEeecCCCCC-CChHHHHHcCCCCCCceEEEecccCCCCCcceEeecccccceeeEEEEEEEccCCCcC-CCCCCcC
Q 024905 152 TVRILFQPAEEGG-AGAFHMIKEGALGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAA-MPHSTID 229 (260)
Q Consensus 152 ~i~~~~~~dEE~g-~G~~~~~~~g~~~~~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~v~G~~~Hs~-~p~~g~n 229 (260)
+|.|+|++|||.| .|+++++.+++ .+|+++++|. +++. .+. ..++|..|++|+++|+++|++ .|+.|+|
T Consensus 162 ~i~~~~~~dEE~g~~G~~~~~~~~~--~~d~~~~~~~--~~~~-~i~----~~~~G~~~~~v~v~Gk~aHa~~~p~~g~N 232 (404)
T PRK13381 162 DIVVAFVPDEEIGLRGAKALDLARF--PVDFAYTIDC--CELG-EVV----YENFNAASAEITITGVTAHPMSAKGVLVN 232 (404)
T ss_pred CEEEEEEcccccccccHHHHHHhcC--CCCEEEEecC--CCcc-eEE----EecCcceEEEEEEEeEecCCCCCcccCcC
Confidence 9999999999988 79999987653 3688887754 4443 332 237899999999999999988 5899999
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 024905 230 PILTASSVILALQQLISRE 248 (260)
Q Consensus 230 Ai~~~~~~i~~l~~~~~~~ 248 (260)
||..+++++.+|+++..+.
T Consensus 233 AI~~a~~~i~~l~~~~~~~ 251 (404)
T PRK13381 233 PILMANDFISHFPRQETPE 251 (404)
T ss_pred HHHHHHHHHHhCCccCCCC
Confidence 9999999999998875443
No 39
>PRK08737 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=3.2e-31 Score=238.50 Aligned_cols=185 Identities=18% Similarity=0.192 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHHhCCCCC----cchHHHHHHHHHHHHhCCCCeEee---cCCceEEEEEcCCCCcEEEEEeccCCCCCCC
Q 024905 37 KDWLVSVRRQIHENPELL----FEEHNTSALIRRELDKLGIPYAYP---VAKTGIVAQIGSGSRPVVVLRADMDALPLQE 109 (260)
Q Consensus 37 ~~~~~~~~~~l~~ips~s----~~e~~~~~~l~~~l~~~G~~~~~~---~~~~nlia~~~~~~~~~i~l~~H~DtVp~~~ 109 (260)
.+++++++++|++|||.+ ++|.++++|+.++|+ |++++.. +++.|+++.. + +|+|+|+||+||||+++
T Consensus 5 ~~~~~~~l~~Lv~i~s~~~~~~~~e~~~~~~l~~~l~--g~~~~~~~~~~~~~nli~~~-g--~~~lll~gH~DtVp~~~ 79 (364)
T PRK08737 5 LESTLDHLQALVSFDTRNPPRAITTGGIFDYLRAQLP--GFQVEVIDHGAGAVSLYAVR-G--TPKYLFNVHLDTVPDSP 79 (364)
T ss_pred HHHHHHHHHHHhCCCCcCCCCCCCcHHHHHHHHHHhC--CCEEEEecCCCCceEEEEEc-C--CCeEEEEeeeCCCCCCC
Confidence 457889999999999985 357899999999997 8887653 2457999864 2 37899999999999864
Q ss_pred CCCCcccc----ccCCccccCCC---cHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC--CChHHHHHcCCCCCCc
Q 024905 110 LVEWEHKS----KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG--AGAFHMIKEGALGDSE 180 (260)
Q Consensus 110 ~~~w~~~~----~~~g~~~g~G~---kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g--~G~~~~~~~g~~~~~d 180 (260)
.|.++| ++||++||||+ |+++++++.|++. ++++|.|+|++|||.| .|++.+++.+. +.|
T Consensus 80 --~w~~~Pf~~~~~~g~lyGrGa~DmKg~~aa~l~a~~~-------~~~~v~~~~~~dEE~g~~~g~~~~~~~~~--~~~ 148 (364)
T PRK08737 80 --HWSADPHVMRRTDDRVIGLGVCDIKGAAAALLAAANA-------GDGDAAFLFSSDEEANDPRCVAAFLARGI--PYE 148 (364)
T ss_pred --CCCCCCCceEEECCEEEEECcccchHHHHHHHHHHHc-------cCCCEEEEEEcccccCchhhHHHHHHhCC--CCC
Confidence 585543 56899999984 8999999998763 3568999999999977 48888988763 468
Q ss_pred eEEEecccCCCCCcceEeecccccceeeEEEEEEEccCCCcCCC-CCCcCHHHHHHHHHHHHHHHH
Q 024905 181 AIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMP-HSTIDPILTASSVILALQQLI 245 (260)
Q Consensus 181 ~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~v~G~~~Hs~~p-~~g~nAi~~~~~~i~~l~~~~ 245 (260)
++|+. +|++... ..+++|..+++|+++|+++|+|.| +.|+|||..+++++.++.+..
T Consensus 149 ~~iv~-----Ept~~~~---~~~~kG~~~~~v~v~Gk~aHas~p~~~G~NAI~~~~~~l~~~~~~~ 206 (364)
T PRK08737 149 AVLVA-----EPTMSEA---VLAHRGISSVLMRFAGRAGHASGKQDPSASALHQAMRWGGQALDHV 206 (364)
T ss_pred EEEEc-----CCCCcee---EEecceeEEEEEEEEeeccccCCCcccCCCHHHHHHHHHHHHHHHH
Confidence 88874 4554321 245899999999999999999988 589999999999998876554
No 40
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=100.00 E-value=7.4e-31 Score=239.63 Aligned_cols=216 Identities=23% Similarity=0.330 Sum_probs=170.5
Q ss_pred HHHhhHHHHHHHHHHHHhCCCCC-cchHHHHHHHHHHHHhCCCCeEeec-C----CceEEEEEcCCCC-cEEEEEeccCC
Q 024905 32 SAQQDKDWLVSVRRQIHENPELL-FEEHNTSALIRRELDKLGIPYAYPV-A----KTGIVAQIGSGSR-PVVVLRADMDA 104 (260)
Q Consensus 32 ~i~~~~~~~~~~~~~l~~ips~s-~~e~~~~~~l~~~l~~~G~~~~~~~-~----~~nlia~~~~~~~-~~i~l~~H~Dt 104 (260)
.....++++++++++|++|||++ ..+.++++|+.++|+++|+.++... . .+|+++++.++++ |+|+|+||+||
T Consensus 7 ~~~~~~~~~~~~l~~lv~~~s~s~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~n~~~~~~~~~~~~~l~l~~H~Dv 86 (409)
T COG0624 7 VSLDLLDDILELLKELVRIPSVSAGEEAEAAELLAEWLEELGFEVEEDEVGPGPGRPNLVARLGGGDGGPTLLLGGHLDV 86 (409)
T ss_pred HHHHhhHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHcCCceEEeecCCCCCceEEEEEecCCCCCCeEEEeccccc
Confidence 34455677889999999999999 8999999999999999999876531 2 4599999987643 99999999999
Q ss_pred CCCCCCCCCcccc----ccCCccccCCC---cHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC-CChHHHHHcCC-
Q 024905 105 LPLQELVEWEHKS----KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEGA- 175 (260)
Q Consensus 105 Vp~~~~~~w~~~~----~~~g~~~g~G~---kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g-~G~~~~~~~g~- 175 (260)
||+++..+|.++| ++||++||||+ ||++++++.|++.+.+.+..++++|.+++++|||.| .++..++.++.
T Consensus 87 VP~g~~~~W~~~Pf~~~~~dg~lyGRG~~D~KG~~~a~l~A~~~l~~~~~~~~~~v~~~~~~dEE~g~~~~~~~~~~~~~ 166 (409)
T COG0624 87 VPAGGGEDWTTDPFEPTIKDGKLYGRGAADMKGGLAAALYALSALKAAGGELPGDVRLLFTADEESGGAGGKAYLEEGEE 166 (409)
T ss_pred cCCCCcccCccCCCccEEECCEEEecCccccchHHHHHHHHHHHHHHhCCCCCeEEEEEEEeccccCCcchHHHHHhcch
Confidence 9999888896543 56789999985 999999999999999987788999999999999988 67877777643
Q ss_pred --CCCCceEEEecccCCCCCcceEeecccccceeeEEEEEEEccCCCcCC--CCCCcC----HHHHHHHHHHHHHHHHhh
Q 024905 176 --LGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAM--PHSTID----PILTASSVILALQQLISR 247 (260)
Q Consensus 176 --~~~~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~v~G~~~Hs~~--p~~g~n----Ai~~~~~~i~~l~~~~~~ 247 (260)
...+|+++..++....+.+...+. +++|..+++++++|+++|+|. |+.+.| |+..+++++..+.++..+
T Consensus 167 ~~~~~~d~~i~~E~~~~~~~~~~~~~---~~kG~~~~~v~v~G~~~Has~~~p~~~~n~i~~a~~~~~~~~~~~~~~~~~ 243 (409)
T COG0624 167 ALGIRPDYEIVGEPTLESEGGDIIVV---GHKGSLWLEVTVKGKAGHASTTPPDLGRNPIHAAIEALAELIEELGDLAGE 243 (409)
T ss_pred hhccCCCEEEeCCCCCcccCCCeEEE---cceeEEEEEEEEEeecccccccCCcccccHHHHHHHHHHHHHHHhcccccc
Confidence 135788888654110123333322 589999999999999999997 999999 556666666666555444
Q ss_pred cCC
Q 024905 248 EAD 250 (260)
Q Consensus 248 ~~~ 250 (260)
..+
T Consensus 244 ~~~ 246 (409)
T COG0624 244 GFD 246 (409)
T ss_pred ccc
Confidence 433
No 41
>PRK05469 peptidase T; Provisional
Probab=99.98 E-value=2.6e-31 Score=242.62 Aligned_cols=201 Identities=16% Similarity=0.162 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHhCCCCCcc----------hHHHHHHHHHHHHhCCCCeEeecCCceEEEEEcCC---CCcEEEEEeccCC
Q 024905 38 DWLVSVRRQIHENPELLFE----------EHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSG---SRPVVVLRADMDA 104 (260)
Q Consensus 38 ~~~~~~~~~l~~ips~s~~----------e~~~~~~l~~~l~~~G~~~~~~~~~~nlia~~~~~---~~~~i~l~~H~Dt 104 (260)
+++++.+++|++|||+|.+ |.++++||.++|+++|++....+..+|+++.++++ ++|+|+|+|||||
T Consensus 2 ~~~~~~l~~~~~i~s~s~~~~~~~~~~~~~~~~a~~l~~~l~~~G~~~~~~~~~~~v~~~~~g~~~~~~~~i~l~~H~D~ 81 (408)
T PRK05469 2 DKLLERFLRYVKIDTQSDENSTTVPSTEGQWDLAKLLVEELKELGLQDVTLDENGYVMATLPANVDKDVPTIGFIAHMDT 81 (408)
T ss_pred chHHHHHHhhEEeecccCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEECCCeEEEEEecCCCCCCCCeEEEEEeccC
Confidence 4678899999999999966 89999999999999999733345678999999763 2599999999999
Q ss_pred CCCCCC---------------------CCCccccc--------cCCcccc-------CCCcHHHHHHHHHHHHHHhccCC
Q 024905 105 LPLQEL---------------------VEWEHKSK--------IDGKMHA-------CGHDVHTTMLLGAAKLIHQRKDK 148 (260)
Q Consensus 105 Vp~~~~---------------------~~w~~~~~--------~~g~~~g-------~G~kg~~a~~l~a~~~L~~~~~~ 148 (260)
||+.+. +.|++++. .++.+|| +|||++++++++|+++|++.+..
T Consensus 82 vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~rG~~~lg~D~Kgglaa~l~a~~~l~~~~~~ 161 (408)
T PRK05469 82 APDFSGKNVKPQIIENYDGGDIALGDGNEVLSPAEFPELKNYIGQTLITTDGTTLLGADDKAGIAEIMTALEYLIAHPEI 161 (408)
T ss_pred CCCCCCCCCCCEEeccCCCcceecCCCceEechHhCchHHhccCCCEEEcCCCEeecccchHHHHHHHHHHHHHHhCCCC
Confidence 987431 23444321 1234555 66799999999999999887666
Q ss_pred CCceEEEEeecCCCCCCChHHHHHcCCCCCCceEEEecccCCCCCcceEeecccccceeeEEEEEEEccCCCcC-CCCCC
Q 024905 149 LKGTVRILFQPAEEGGAGAFHMIKEGALGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAA-MPHST 227 (260)
Q Consensus 149 ~~~~i~~~~~~dEE~g~G~~~~~~~g~~~~~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~v~G~~~Hs~-~p~~g 227 (260)
++++|.|+|++|||.|.|++.++.++. ..|+.+++++ .+.+.+.. .++|..+++|+++|+++|++ .|+.|
T Consensus 162 ~~g~v~~~f~~dEE~g~Ga~~~~~~~~--~~~~~~~~~~---~~~g~~~~----~~~g~~~~~i~v~Gk~~Ha~~~p~~g 232 (408)
T PRK05469 162 KHGDIRVAFTPDEEIGRGADKFDVEKF--GADFAYTVDG---GPLGELEY----ENFNAASAKITIHGVNVHPGTAKGKM 232 (408)
T ss_pred CCCCEEEEEecccccCCCHHHhhhhhc--CCcEEEEecC---CCcceEEe----ccCceeEEEEEEeeecCCCCCCcccc
Confidence 789999999999998888988875533 3566766543 34565433 25788999999999999987 58999
Q ss_pred cCHHHHHHHHHHHHHHHHhh
Q 024905 228 IDPILTASSVILALQQLISR 247 (260)
Q Consensus 228 ~nAi~~~~~~i~~l~~~~~~ 247 (260)
+|||..+++++..|+++..+
T Consensus 233 ~nAi~~~~~~i~~l~~~~~~ 252 (408)
T PRK05469 233 VNALLLAADFHAMLPADETP 252 (408)
T ss_pred cCHHHHHHHHHHhCCCCCCC
Confidence 99999999999998876543
No 42
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=99.98 E-value=5e-31 Score=235.80 Aligned_cols=183 Identities=14% Similarity=0.112 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhCCCCeEeecCCceEEEEEcCCCCcEEEEEeccCCCCCCCCCCCccc
Q 024905 37 KDWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVVLRADMDALPLQELVEWEHK 116 (260)
Q Consensus 37 ~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nlia~~~~~~~~~i~l~~H~DtVp~~~~~~w~~~ 116 (260)
.+++++++++|++|||+|++|.++++||.++|+++|+++++. ..+|++. .+ .|+|+|+||+||||. | |.
T Consensus 9 ~~~~~~~l~~lv~i~s~s~~e~~~~~~l~~~l~~~g~~~~~~-~~~~~~~--~g--~~~lll~gH~DtVp~-----~-~~ 77 (346)
T PRK00466 9 KQKAKELLLDLLSIYTPSGNETNATKFFEKISNELNLKLEIL-PDSNSFI--LG--EGDILLASHVDTVPG-----Y-IE 77 (346)
T ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCeEEEe-cCCCcEe--cC--CCeEEEEeccccCCC-----C-CC
Confidence 467889999999999999999999999999999999998864 4567663 22 368999999999994 2 33
Q ss_pred -cccCCccccCC---CcHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC-CChHHHHHcCCCCCCceEEEecccCCC
Q 024905 117 -SKIDGKMHACG---HDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEGALGDSEAIFGMHIDVGI 191 (260)
Q Consensus 117 -~~~~g~~~g~G---~kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g-~G~~~~~~~g~~~~~d~~i~~~~~~~~ 191 (260)
.++||++|||| |||++++++.|+++|++.+ .++.|++++|||.| .|++++++++. ++|++++. +
T Consensus 78 ~~~~~g~iyGrG~~DmKgg~aa~l~a~~~l~~~~----~~i~~~~~~dEE~g~~G~~~l~~~~~--~~d~~i~~-----e 146 (346)
T PRK00466 78 PKIEGEVIYGRGAVDAKGPLISMIIAAWLLNEKG----IKVMVSGLADEESTSIGAKELVSKGF--NFKHIIVG-----E 146 (346)
T ss_pred ceeeCCEEEecCccccchHHHHHHHHHHHHHHcC----CCEEEEEEcCcccCCccHHHHHhcCC--CCCEEEEc-----C
Confidence 46789999998 4999999999999998764 35899999999987 79999998863 47888874 4
Q ss_pred CCcceEeecccccceeeEEEEEEEccCCCcCCCCCCcCHHHHHHHHHHHHHHHH
Q 024905 192 PTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLI 245 (260)
Q Consensus 192 ~~~~~~~~~g~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~ 245 (260)
|++...+ ..+++|..+++|+++|+++|+|.|+ .|||..+++++.+++++.
T Consensus 147 p~~~~~i--~~~~kG~~~~~i~v~G~~~Has~p~--~nAi~~~~~~l~~l~~~~ 196 (346)
T PRK00466 147 PSNGTDI--VVEYRGSIQLDIMCEGTPEHSSSAK--SNLIVDISKKIIEVYKQP 196 (346)
T ss_pred CCCCCce--EEEeeEEEEEEEEEEeeccccCCCC--cCHHHHHHHHHHHHHhcc
Confidence 5543212 2348999999999999999999886 599999999999997653
No 43
>PRK08262 hypothetical protein; Provisional
Probab=99.98 E-value=1.8e-31 Score=248.68 Aligned_cols=204 Identities=17% Similarity=0.202 Sum_probs=160.5
Q ss_pred HhhHHHHHHHHHHHHhCCCCCcchH---------HHHHHHHHHHHhCCCCeEee-cCCceEEEEEcCC-CC-cEEEEEec
Q 024905 34 QQDKDWLVSVRRQIHENPELLFEEH---------NTSALIRRELDKLGIPYAYP-VAKTGIVAQIGSG-SR-PVVVLRAD 101 (260)
Q Consensus 34 ~~~~~~~~~~~~~l~~ips~s~~e~---------~~~~~l~~~l~~~G~~~~~~-~~~~nlia~~~~~-~~-~~i~l~~H 101 (260)
....+++++++++|++|||+|++|. ++++||.++|+..|++++.. .+..|+++.+++. ++ |+|+|+||
T Consensus 40 ~~~~~~~v~~L~~lv~i~S~s~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~~~~~~~~vv~~~~g~~~~~~~ill~gH 119 (486)
T PRK08262 40 AVDEDAAAERLSEAIRFRTISNRDRAEDDAAAFDALHAHLEESYPAVHAALEREVVGGHSLLYTWKGSDPSLKPIVLMAH 119 (486)
T ss_pred cCCHHHHHHHHHHhcccceeccCCCCcccHHHHHHHHHHHHHhChhhhceeEEEEECCccEEEEEECCCCCCCeEEEECc
Confidence 3456889999999999999998763 48899999999999976542 2336788887554 34 89999999
Q ss_pred cCCCCCCCC--CCCc---ccc-ccCCccccCC---CcHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC-CChHHHH
Q 024905 102 MDALPLQEL--VEWE---HKS-KIDGKMHACG---HDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMI 171 (260)
Q Consensus 102 ~DtVp~~~~--~~w~---~~~-~~~g~~~g~G---~kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g-~G~~~~~ 171 (260)
+||||+++. ..|. |.+ ++||++|||| |||++++++.|++.|++.+.+++++|.|+|++|||.| .|+++++
T Consensus 120 ~DvVp~~~~~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~aa~L~A~~~l~~~~~~l~~~I~llf~~dEE~g~~G~~~l~ 199 (486)
T PRK08262 120 QDVVPVAPGTEGDWTHPPFSGVIADGYVWGRGALDDKGSLVAILEAAEALLAQGFQPRRTIYLAFGHDEEVGGLGARAIA 199 (486)
T ss_pred ccccCCCCCCcccCccCCCceEeeCCEEEecCccccchhHHHHHHHHHHHHHcCCCCCCeEEEEEecccccCCcCHHHHH
Confidence 999998653 4684 543 5789999999 6999999999999999888778999999999999977 7988887
Q ss_pred Hc----CCCCCCceEE------Eecc--cCCCCCcceEeecccccceeeEEEEEEEccCCCcCCCCCCcCHHHHHHHHHH
Q 024905 172 KE----GALGDSEAIF------GMHI--DVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVIL 239 (260)
Q Consensus 172 ~~----g~~~~~d~~i------~~~~--~~~~~~~~~~~~~g~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~ 239 (260)
+. +. ..|+++ ..++ ..++|++. .+.+++|..+++|+++|+++|||.|+. .||+..+++++.
T Consensus 200 ~~l~~~~~--~~~~~~~~~~~i~~~~~~~~~~p~~~----i~~~~kG~~~~~i~v~G~~~Hss~p~~-~nai~~l~~~l~ 272 (486)
T PRK08262 200 ELLKERGV--RLAFVLDEGGAITEGVLPGVKKPVAL----IGVAEKGYATLELTARATGGHSSMPPR-QTAIGRLARALT 272 (486)
T ss_pred HHHHHhcC--CEEEEEeCCceecccccCCCCceEEe----eEEeeeeeEEEEEEEecCCCCCCCCCC-CCHHHHHHHHHH
Confidence 53 21 234433 1111 11334443 234578999999999999999999998 999999999999
Q ss_pred HHHHH
Q 024905 240 ALQQL 244 (260)
Q Consensus 240 ~l~~~ 244 (260)
+|++.
T Consensus 273 ~l~~~ 277 (486)
T PRK08262 273 RLEDN 277 (486)
T ss_pred HHhhC
Confidence 99873
No 44
>PRK07079 hypothetical protein; Provisional
Probab=99.98 E-value=1e-30 Score=242.65 Aligned_cols=213 Identities=13% Similarity=0.068 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhCCCCCcc---hHHHHHHHH----HHHHhCCCCeEee-----cCCceEEEEEcCC
Q 024905 24 ILTNQVMISAQQDKDWLVSVRRQIHENPELLFE---EHNTSALIR----RELDKLGIPYAYP-----VAKTGIVAQIGSG 91 (260)
Q Consensus 24 ~~~~~i~~~i~~~~~~~~~~~~~l~~ips~s~~---e~~~~~~l~----~~l~~~G~~~~~~-----~~~~nlia~~~~~ 91 (260)
.+.+++.+++++ +++++++++|++|||+|++ +.++++|+. ++|+++||+++.. .+++|+++.++++
T Consensus 5 ~~~~~~~~~~~~--~~~~~~L~~LV~ipSvs~~~~~~~~~~~~l~~~~~~~l~~~G~~~~~~~~~~~~~~~~vva~~~~~ 82 (469)
T PRK07079 5 AAIARAAAYFDS--GAFFADLARRVAYRTESQNPDRAPALRAYLTDEIAPALAALGFTCRIVDNPVAGGGPFLIAERIED 82 (469)
T ss_pred HHHHHHHHhhcc--HHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCEEEEEeCCC
Confidence 344566666654 4799999999999999973 456777764 5899999998752 2468999998654
Q ss_pred -CCcEEEEEeccCCCCCCCCCCCc-----ccc-ccCCccccCC---CcHHHHHHHHHHHHHHhc-cCCCCceEEEEeecC
Q 024905 92 -SRPVVVLRADMDALPLQELVEWE-----HKS-KIDGKMHACG---HDVHTTMLLGAAKLIHQR-KDKLKGTVRILFQPA 160 (260)
Q Consensus 92 -~~~~i~l~~H~DtVp~~~~~~w~-----~~~-~~~g~~~g~G---~kg~~a~~l~a~~~L~~~-~~~~~~~i~~~~~~d 160 (260)
++|+|+|+||+||||++ ...|. |.+ ++||++|||| |||+++++++|+++|.+. +.+++++|.|++++|
T Consensus 83 ~~~~~lll~gH~DvVp~~-~~~W~~~~~Pf~~~~~dg~lyGRGa~DmKgg~aa~l~A~~~l~~~~~~~~~~~i~~~~~~d 161 (469)
T PRK07079 83 DALPTVLIYGHGDVVRGY-DEQWREGLSPWTLTEEGDRWYGRGTADNKGQHTINLAALEQVLAARGGRLGFNVKLLIEMG 161 (469)
T ss_pred CCCCEEEEEcccCCCCCC-hHHhcccCCCCcccccCCEEEEEeccCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECc
Confidence 46899999999999975 34575 333 6799999998 499999999999998653 467889999999999
Q ss_pred CCCC-CChHHHHHcCC-CCCCceEEEecccCCCCCcceEeecccccceeeEEEEEEEcc--CCCcCCCCCC--cCHHHHH
Q 024905 161 EEGG-AGAFHMIKEGA-LGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGR--GGHAAMPHST--IDPILTA 234 (260)
Q Consensus 161 EE~g-~G~~~~~~~g~-~~~~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~v~G~--~~Hs~~p~~g--~nAi~~~ 234 (260)
||.| .|+++++++.. ...+|++|+.++....+... .+ ..+++|..+++|+++|+ +.||+ ++.| .||+..+
T Consensus 162 EE~g~~G~~~l~~~~~~~~~~d~~iv~e~~~~~~~~~-~i--~~g~kG~~~~~v~v~G~~~~~hs~-~~~g~~~nai~~l 237 (469)
T PRK07079 162 EEIGSPGLAEVCRQHREALAADVLIASDGPRLSAERP-TL--FLGSRGAVNFRLRVNLRDGAHHSG-NWGGLLRNPGTVL 237 (469)
T ss_pred cccCCccHHHHHHHhHHhcCCCEEEEeCCCccCCCCe-EE--EEecceEEEEEEEEeeCCCCCCCC-ccccccCCHHHHH
Confidence 9988 89999988642 11368998865421111111 12 24589999999999998 44666 3444 6999999
Q ss_pred HHHHHHHHH
Q 024905 235 SSVILALQQ 243 (260)
Q Consensus 235 ~~~i~~l~~ 243 (260)
+++|.++.+
T Consensus 238 ~~ai~~l~~ 246 (469)
T PRK07079 238 AHAIASLVD 246 (469)
T ss_pred HHHHHHhCC
Confidence 999999854
No 45
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=99.97 E-value=4.4e-31 Score=241.19 Aligned_cols=197 Identities=16% Similarity=0.203 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHhCCCCCc----------chHHHHHHHHHHHHhCCCC-eEeecCCceEEEEEcCCCC---cEEEEEeccC
Q 024905 38 DWLVSVRRQIHENPELLF----------EEHNTSALIRRELDKLGIP-YAYPVAKTGIVAQIGSGSR---PVVVLRADMD 103 (260)
Q Consensus 38 ~~~~~~~~~l~~ips~s~----------~e~~~~~~l~~~l~~~G~~-~~~~~~~~nlia~~~~~~~---~~i~l~~H~D 103 (260)
+.+++.+.++++|+|.|+ .|++++++|.++|+++|++ ++.+.+.+||+|++++..+ |+|+|.+|||
T Consensus 3 ~~~~~~f~~~~~i~s~s~~~~~~~ps~~~~~~~a~~l~~~l~~lG~~~v~~d~~~gnv~~~~~~~~~~~~~~i~~~aHmD 82 (410)
T TIGR01882 3 EELLPRFLTYVKVNTRSDENSDTCPSTPGQLTFGNMLVDDLKSLGLQDAHYDEKNGYVIATIPSNTDKDVPTIGFLAHVD 82 (410)
T ss_pred hHHHHHHHhhEEEecccCCCCCCCCCCHhHHHHHHHHHHHHHHcCCceEEEcCCceEEEEEecCCCCCCCCEEEEEEecc
Confidence 567888899999999997 5668999999999999997 7764338999999966533 9999999999
Q ss_pred CCCCCCCC-------------------------CCcccc-----------ccCCccccCCCcHHHHHHHHHHHHHHhccC
Q 024905 104 ALPLQELV-------------------------EWEHKS-----------KIDGKMHACGHDVHTTMLLGAAKLIHQRKD 147 (260)
Q Consensus 104 tVp~~~~~-------------------------~w~~~~-----------~~~g~~~g~G~kg~~a~~l~a~~~L~~~~~ 147 (260)
|||+.+.. .|.|++ ..++.+||+|||+++|++++|++.|++.+.
T Consensus 83 Tv~~~~~~v~p~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~g~~l~G~D~KgglAa~l~A~~~L~e~~~ 162 (410)
T TIGR01882 83 TADFNGENVNPQIIENYDGESIIQLGDLEFTLDPDQFPNLSGYKGQTLITTDGTTLLGADDKAGIAEIMTAADYLINHPE 162 (410)
T ss_pred cCcCCCCCCCCEEEecCCCceeeecCCCCeEEChHhChhHHhccCceEEEcCCCEeecccCHHHHHHHHHHHHHHHhCCC
Confidence 99842221 343332 236699999999999999999999988643
Q ss_pred CCCceEEEEeecCCCCCCChHHHHHcCCCCCCceEEEecccCCCCCcceEeecccccceeeEEEEEEEccCCCcCCC-CC
Q 024905 148 KLKGTVRILFQPAEEGGAGAFHMIKEGALGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMP-HS 226 (260)
Q Consensus 148 ~~~~~i~~~~~~dEE~g~G~~~~~~~g~~~~~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~v~G~~~Hs~~p-~~ 226 (260)
.++++|.|+|++|||.|.|++.+..++. +.++.++++ ++|+|.+... ..|..+++|+++|+++|++.+ +.
T Consensus 163 ~~~g~I~~~ft~dEE~g~Ga~~l~~~~~--~~~~~~~i~---gep~g~i~~~----~~g~~~~~I~v~Gk~aHa~~~~~~ 233 (410)
T TIGR01882 163 IKHGTIRVAFTPDEEIGRGAHKFDVKDF--NADFAYTVD---GGPLGELEYE----TFSAAAAKITIQGNNVHPGTAKGK 233 (410)
T ss_pred CCCCCEEEEEECcccCCcCcchhhhhhc--CccEEEEeC---CCCCCeEEEc----cccceEEEEEEEEEecCcccChHH
Confidence 4688999999999998888888865543 356666553 4677765442 358899999999999999965 67
Q ss_pred CcCHHHHHHHHHHHHHH
Q 024905 227 TIDPILTASSVILALQQ 243 (260)
Q Consensus 227 g~nAi~~~~~~i~~l~~ 243 (260)
++||+..+.+++..+..
T Consensus 234 g~nAi~~a~~~~~~l~~ 250 (410)
T TIGR01882 234 MINAAQIAIDLHNLLPE 250 (410)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 99999999998776654
No 46
>PRK06156 hypothetical protein; Provisional
Probab=99.97 E-value=2.1e-30 Score=243.12 Aligned_cols=212 Identities=13% Similarity=0.162 Sum_probs=158.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhCCCCCc-----ch----HHHHHHHHHHHHhCCCCeEeecCCceE-E-EEEcCCCCc
Q 024905 26 TNQVMISAQQDKDWLVSVRRQIHENPELLF-----EE----HNTSALIRRELDKLGIPYAYPVAKTGI-V-AQIGSGSRP 94 (260)
Q Consensus 26 ~~~i~~~i~~~~~~~~~~~~~l~~ips~s~-----~e----~~~~~~l~~~l~~~G~~~~~~~~~~nl-i-a~~~~~~~~ 94 (260)
.+.+.-..+++.+++++++++|++|||++. +| ..+++||.++|+++|++++. ..|+ + +++++.+.|
T Consensus 34 ~~~~~~~~~~~~~~~~~~l~~lv~i~S~~~~~~~~~e~~~~~~~~~~l~~~l~~~G~~~~~---~~~~v~~~~~~g~~~~ 110 (520)
T PRK06156 34 LDALLYARLKYGAAAIESLRELVAFPTVRVEGVPQHENPEFIGFKKLLKSLARDFGLDYRN---VDNRVLEIGLGGSGSD 110 (520)
T ss_pred cchhHHhhhhhHHHHHHHHHHhcCcCcccCCCCCccCCccHHHHHHHHHHHHHHCCCeEEe---cCCeEEEEEecCCCCC
Confidence 344444456778899999999999999974 23 35679999999999998864 2454 4 666654458
Q ss_pred EEEEEeccCCCCCCCCCCCcc-----cc----ccCCccccCCC---cHHHHHHHHHHHHHHhccCCCCceEEEEeecCCC
Q 024905 95 VVVLRADMDALPLQELVEWEH-----KS----KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEE 162 (260)
Q Consensus 95 ~i~l~~H~DtVp~~~~~~w~~-----~~----~~~g~~~g~G~---kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE 162 (260)
+|+|+||+||||++. ..|.+ +| ++||++||||+ |+++++++.|++.|.+.+.+++++|.|+|++|||
T Consensus 111 ~l~l~gH~DvVp~~~-~~W~~~~~~~~Pf~~~~~~g~lyGRG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE 189 (520)
T PRK06156 111 KVGILTHADVVPANP-ELWVLDGTRLDPFKVTLVGDRLYGRGTEDDKGAIVTALYAMKAIKDSGLPLARRIELLVYTTEE 189 (520)
T ss_pred eEEEEEecCccCCCC-ccCccCCccCCCCceEEECCEEEEcCcccchHHHHHHHHHHHHHHHcCCCCCceEEEEEecccc
Confidence 999999999999864 46876 54 46899999984 9999999999999998887788999999999999
Q ss_pred CC-CChHHHHHcCCCCCCceEEEeccc----CCCCCc-----------------------------c------eEeec--
Q 024905 163 GG-AGAFHMIKEGALGDSEAIFGMHID----VGIPTG-----------------------------S------IASIS-- 200 (260)
Q Consensus 163 ~g-~G~~~~~~~g~~~~~d~~i~~~~~----~~~~~~-----------------------------~------~~~~~-- 200 (260)
.| .|++++++++.. .++.++++.+ .++++. . ..+..
T Consensus 190 ~g~~G~~~~~~~~~~--~~~~~~~D~~~~~~~~E~~~~~~~i~~~~~~~~~~~~~l~~~~gG~~~n~ip~~a~~~~~~~~ 267 (520)
T PRK06156 190 TDGDPLKYYLERYTP--PDYNITLDAEYPVVTAEKGWGTIMATFPKRAADGKGAEIVAMTGGAFANQIPQTAVATLSGGD 267 (520)
T ss_pred cCchhHHHHHHhcCC--CCeEEeeCCCCceEEEecceEEEEEEecCcCCCCCceeEEEEEcCCcCCCCCCccEEEEecCC
Confidence 87 799999887532 3444432210 011110 0 00000
Q ss_pred ---------------ccccceee---------EEEEEEEccCCCcCCCCCCcCHHHHHHHHHHHHHH
Q 024905 201 ---------------GPHLAATS---------VFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQ 243 (260)
Q Consensus 201 ---------------g~~~~G~~---------~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~ 243 (260)
...++|.. |++|+++|+++|+|.|+.|.|||..+++++.+|++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~I~v~Gk~aHsS~P~~G~NAI~~aa~ii~~L~~ 334 (520)
T PRK06156 268 PAALAAALQAAAAAQVKRHGGGFSIDFKRDGKDVTITVTGKSAHSSTPESGVNPVTRLALFLQSLDG 334 (520)
T ss_pred HHHHHHHHHHHHHHHHhhcccCceEEEEEcCCeEEEEEEeEECCCCCCCCCccHHHHHHHHHHhccc
Confidence 00122333 89999999999999999999999999999999976
No 47
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=99.97 E-value=2.9e-30 Score=231.99 Aligned_cols=192 Identities=18% Similarity=0.255 Sum_probs=156.4
Q ss_pred HHHHHHHHHhCCCCCcchHHHHHHHHHHHHhCCCCeEeec------CCceEEEEEcCC-CCcEEEEEeccCCCCCCCCCC
Q 024905 40 LVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPV------AKTGIVAQIGSG-SRPVVVLRADMDALPLQELVE 112 (260)
Q Consensus 40 ~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~------~~~nlia~~~~~-~~~~i~l~~H~DtVp~~~~~~ 112 (260)
+++++++|++|||++++|.++++||.++|+++|++++... .++|+++.+++. ++|+|+|+||+||||+++ .
T Consensus 2 ~~~~~~~l~~i~s~s~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~l~~H~D~V~~~~--~ 79 (361)
T TIGR01883 2 LKKYFLELIQIDSESGKEKAILTYLKKQITKLGIPVSLDEVPAEVSNDNNLIARLPGTVKFDTIFFCGHMDTVPPGA--G 79 (361)
T ss_pred hHHHHHHHeecCCCCCcHHHHHHHHHHHHHHcCCEEEEeccccccCCCceEEEEEeCCCCCCcEEEEeeccccCCCC--C
Confidence 5788999999999999999999999999999999987632 378999999765 458999999999999754 2
Q ss_pred CccccccCCccccCCC-------cHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC-CChHHHHHcCCCCCCceEEE
Q 024905 113 WEHKSKIDGKMHACGH-------DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEGALGDSEAIFG 184 (260)
Q Consensus 113 w~~~~~~~g~~~g~G~-------kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g-~G~~~~~~~g~~~~~d~~i~ 184 (260)
|. ..+++|++||||+ |++++++|.+++.|++.+ .++++|.|+|++|||.| .|++.+.+.+. ..++.++
T Consensus 80 ~~-~~~~~~~~~g~G~~~~g~D~k~g~a~~l~~~~~l~~~~-~~~~~v~~~~~~~EE~g~~G~~~~~~~~~--~~~~~~~ 155 (361)
T TIGR01883 80 PE-PVVEDGIFTSLGGTILGADDKAGVAAMLEAMDVLSTEE-TPHGTIEFIFTVKEELGLIGMRLFDESKI--TAAYGYC 155 (361)
T ss_pred CC-ceecCCeEecCCCeEeeccccHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccCchhHhHhChhhc--CcceeEE
Confidence 32 1256789998763 699999999999998865 47789999999999988 69988876532 3567776
Q ss_pred ecccCCCCCcceEeecccccceeeEEEEEEEccCCCcC-CCCCCcCHHHHHHHHHHHHHH
Q 024905 185 MHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAA-MPHSTIDPILTASSVILALQQ 243 (260)
Q Consensus 185 ~~~~~~~~~~~~~~~~g~~~~G~~~~~i~v~G~~~Hs~-~p~~g~nAi~~~~~~i~~l~~ 243 (260)
.++ +.+.+.+.. +++|..+++++++|+++|++ .|+.|+||+..+++++..|+.
T Consensus 156 ~~~--~~~~~~i~~----~~~g~~~~~i~~~G~~~Ha~~~p~~g~nAi~~~~~~i~~l~~ 209 (361)
T TIGR01883 156 LDA--PGEVGNIQL----AAPTQVKVDATIAGKDAHAGLVPEDGISAISVARMAIHAMRL 209 (361)
T ss_pred EeC--CCCcceEEe----cCCceEEEEEEEEeeecCCCCCcccCcCHHHHHHHHHHhccc
Confidence 543 222343332 36899999999999999986 799999999999999999865
No 48
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=99.97 E-value=2.2e-29 Score=231.92 Aligned_cols=200 Identities=15% Similarity=0.164 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHhCCCCCc------------chHHHHHHHHHHHHhCCCCeEeecCCceEEEEEc-CCCCcEEEEEeccCC
Q 024905 38 DWLVSVRRQIHENPELLF------------EEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIG-SGSRPVVVLRADMDA 104 (260)
Q Consensus 38 ~~~~~~~~~l~~ips~s~------------~e~~~~~~l~~~l~~~G~~~~~~~~~~nlia~~~-~~~~~~i~l~~H~Dt 104 (260)
+++++++++|++|||++. ++.++++|+.++|+++|++++.. .|+.+... ++..|+|+|+||+||
T Consensus 2 ~~~i~ll~~Lv~ipS~s~~~~p~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~l~l~gH~D~ 78 (447)
T TIGR01887 2 DEILEDLKELIRIDSVEDLEEAKEGAPFGEGPKKALDKFLELAKRDGFTTENV---DNYAGYAEYGQGEEYLGILGHLDV 78 (447)
T ss_pred hHHHHHHHHhcCcCcCCCCCCCCCCCCcchhHHHHHHHHHHHHHHcCceEEEe---cCceEEEEeCCCCCeEEEEeecCC
Confidence 467899999999999983 24689999999999999998743 24433322 223479999999999
Q ss_pred CCCCCCCCCccc---c-ccCCccccCCC---cHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC-CChHHHHHcCCC
Q 024905 105 LPLQELVEWEHK---S-KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEGAL 176 (260)
Q Consensus 105 Vp~~~~~~w~~~---~-~~~g~~~g~G~---kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g-~G~~~~~~~g~~ 176 (260)
||+++ .|.++ + ++||++||||+ ||++++++.|++.|++.+.+++++|.|++++|||.| .|+++++++...
T Consensus 79 Vp~~~--~W~~~Pf~~~~~~g~lyGRGa~D~KG~laa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~ 156 (447)
T TIGR01887 79 VPAGD--GWTSPPFEAEIKDGRIYGRGTLDDKGPTIAALYAMKILKELGLKLKKKIRFIFGTDEETGWACIDYYFEHEEA 156 (447)
T ss_pred CCCCC--CCcCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHHcCCCCCCcEEEEEECCcccCcHhHHHHHHhcCC
Confidence 99865 58544 3 56899999984 999999999999999888788999999999999998 788888876321
Q ss_pred C----CCce---EEEecc----------------------cCCCCCcceEe--ecccccc-------------------e
Q 024905 177 G----DSEA---IFGMHI----------------------DVGIPTGSIAS--ISGPHLA-------------------A 206 (260)
Q Consensus 177 ~----~~d~---~i~~~~----------------------~~~~~~~~~~~--~~g~~~~-------------------G 206 (260)
. ..|. +++.++ ..++|++.+.. .....++ |
T Consensus 157 ~~~~~~~d~~~~~~~~e~g~~~~~~~v~g~~~~~~~i~~~~~Ge~tn~~p~~a~~~v~~~~~~~~~~~~~~~~~~~~~~g 236 (447)
T TIGR01887 157 PDIGFTPDAEFPIIYGEKGIVTLEISFKDDTEGDVVLESFKAGEAFNMVPDHATAVISGKELLEVEKEKFVFFIAKELEG 236 (447)
T ss_pred CCEEEeCCCCcceEEEecCeEEEEEEeccCCCCceeEEEEeCCCcCCccCcceEEEEeccchhHHHHHHHHHhhhcCcce
Confidence 1 0121 222111 12445554310 0001122 5
Q ss_pred ee-----EEEEEEEccCCCcCCCCCCcCHHHHHHHHHHHHH
Q 024905 207 TS-----VFNVKVEGRGGHAAMPHSTIDPILTASSVILALQ 242 (260)
Q Consensus 207 ~~-----~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~ 242 (260)
.. |++|+++|+++|+|.|+.|.|||+.+++++..++
T Consensus 237 ~~~~~~~~~~i~v~G~~aHss~p~~G~NAi~~l~~~l~~l~ 277 (447)
T TIGR01887 237 SFEVNDGTATITLEGKSAHGSAPEKGINAATYLALFLAQLN 277 (447)
T ss_pred EEEecCCEEEEEEEeeecccCCCccCccHHHHHHHHHHhcc
Confidence 55 8999999999999999999999999999999986
No 49
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=99.96 E-value=1.5e-28 Score=218.99 Aligned_cols=178 Identities=13% Similarity=0.097 Sum_probs=144.9
Q ss_pred HHHHHHHhCCCCCcchHHHHHHHHHHHHhCCCCeEeecCCceEEEEEcCCCCcEEEEEeccCCCCCCCCCCCccccccCC
Q 024905 42 SVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVVLRADMDALPLQELVEWEHKSKIDG 121 (260)
Q Consensus 42 ~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nlia~~~~~~~~~i~l~~H~DtVp~~~~~~w~~~~~~~g 121 (260)
+++++|++|||+|++|.++++||.++|+++|+++.. +..+|+++..+ +++|+|+|+||+||||. .|+. .++||
T Consensus 1 ~~l~~lv~i~s~s~~e~~~~~~l~~~l~~~g~~~~~-~~~~~~~~~~~-~~~~~i~~~~H~D~vp~----~~~~-~~~~g 73 (336)
T TIGR01902 1 ELLKDLLEIYSPSGKEANAAKFLEEISKDLGLKLII-DDAGNFILGKG-DGHKKILLAGHVDTVPG----YIPV-KIEGG 73 (336)
T ss_pred ChHHHHhcCCCCCcchHHHHHHHHHHHHHcCCEEEE-CCCCcEEEEeC-CCCceEEEEccccccCC----Cccc-EEeCC
Confidence 368899999999999999999999999999999854 45679988764 33599999999999994 2433 25689
Q ss_pred ccccCCC---cHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC-CChHHHHHcCCCCCCceEEEecccCCCCCcceE
Q 024905 122 KMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEGALGDSEAIFGMHIDVGIPTGSIA 197 (260)
Q Consensus 122 ~~~g~G~---kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g-~G~~~~~~~g~~~~~d~~i~~~~~~~~~~~~~~ 197 (260)
++||||+ |+++++++.|++.|++. ..+|.|++++|||.| .|+++++++.. .+++++.+ |++.-.
T Consensus 74 ~i~GrG~~D~Kg~~aa~l~a~~~l~~~----~~~i~~~~~~dEE~g~~G~~~~~~~~~---~~~~ii~e-----pt~~~~ 141 (336)
T TIGR01902 74 LLYGRGAVDAKGPLIAMIFATWLLNEK----GIKVIVSGLVDEESSSKGAREVIDKNY---PFYVIVGE-----PSGAEG 141 (336)
T ss_pred EEEEecccCCCcHHHHHHHHHHHHHhC----CCcEEEEEEeCcccCCccHHHHHhhcC---CCEEEEec-----CCCCcc
Confidence 9999984 99999999999999764 358999999999987 79999988742 35777644 343211
Q ss_pred eecccccceeeEEEEEEEccCCCcCCCCCCcCHHHHHHHHHHHHHH
Q 024905 198 SISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQ 243 (260)
Q Consensus 198 ~~~g~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~ 243 (260)
+ ..+++|..+++++++|+++|+|.|. ||+..+.++++.|.+
T Consensus 142 i--~~~~kG~~~~~v~~~G~~~Hss~~~---~ai~~~~~~~~~l~~ 182 (336)
T TIGR01902 142 I--TLGYKGSLQLKIMCEGTPFHSSSAG---NAAELLIDYSKKIIE 182 (336)
T ss_pred e--eeeeeeEEEEEEEEEecCcccCCCh---hHHHHHHHHHHHHHH
Confidence 1 2357999999999999999999875 599999999999874
No 50
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=99.96 E-value=3.3e-28 Score=225.69 Aligned_cols=196 Identities=19% Similarity=0.266 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhCCCCeEeecCCceEEEEEcC--C--CCcEEEEEeccCCCCCCCC--
Q 024905 37 KDWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGS--G--SRPVVVLRADMDALPLQEL-- 110 (260)
Q Consensus 37 ~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nlia~~~~--~--~~~~i~l~~H~DtVp~~~~-- 110 (260)
.+++++++++|++|||+|++|.++++|+.++++++|++++. +..+|+++++++ + ..|+|+|.||+||||+++.
T Consensus 9 ~~~~~~~l~~Lv~ips~S~~e~~~~~~l~~~~~~~G~~~~~-d~~gnvi~~~~~~~g~~~~~~v~l~gH~DtV~~~~~~~ 87 (485)
T PRK15026 9 PQPLWDIFAKICSIPHPSYHEEQLAEYIVGWAKEKGFHVER-DQVGNILIRKPATAGMENRKPVVLQAHLDMVPQKNNDT 87 (485)
T ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCEEEE-EecCeEEEEEcCCCCCCCCCEEEEEeeecccCCCCCCc
Confidence 46789999999999999999999999999999999999886 467899998753 2 3589999999999998653
Q ss_pred -CCCc---ccc-ccCCccccCCC------cHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC-CChHHHHHcCCCCC
Q 024905 111 -VEWE---HKS-KIDGKMHACGH------DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEGALGD 178 (260)
Q Consensus 111 -~~w~---~~~-~~~g~~~g~G~------kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g-~G~~~~~~~g~~~~ 178 (260)
.+|. |.+ ++||++||||+ |+++++++.++ ++.+. .+++|.++|++|||.| .|++.+.. +.+ .
T Consensus 88 ~~~w~~~P~~~~i~~~~l~g~Gt~lgaD~k~gva~~l~~l---~~~~~-~~~~i~~l~t~dEE~G~~ga~~l~~-~~~-~ 161 (485)
T PRK15026 88 VHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVL---ADENV-VHGPLEVLLTMTEEAGMDGAFGLQS-NWL-Q 161 (485)
T ss_pred cccCCCCCceEEEcCCEEEeCCccccCccHHHHHHHHHHH---HhCCC-CCCCEEEEEEcccccCcHhHHHhhh-ccC-C
Confidence 2574 433 46889998774 57777776654 44443 4789999999999998 79998865 333 5
Q ss_pred CceEEEecccCCCCCcceEe-ecc---------c----ccceeeEEEEEEEc-cCCCcC-CCCCCc-CHHHHHHHHHHHH
Q 024905 179 SEAIFGMHIDVGIPTGSIAS-ISG---------P----HLAATSVFNVKVEG-RGGHAA-MPHSTI-DPILTASSVILAL 241 (260)
Q Consensus 179 ~d~~i~~~~~~~~~~~~~~~-~~g---------~----~~~G~~~~~i~v~G-~~~Hs~-~p~~g~-nAi~~~~~~i~~l 241 (260)
++++|++++. ..+.+.. ..| . ..+|..+++|+++| +++||| .|+.|+ |||..+++++.++
T Consensus 162 ~~~~i~~e~~---~~g~l~~g~~G~~~~~~~~~~~r~~~~~g~~~~~i~v~Gl~ggHsG~~i~~g~~nAi~~la~~l~~~ 238 (485)
T PRK15026 162 ADILINTDSE---EEGEIYMGCAGGIDFTSNLHLDREAVPAGFETFKLTLKGLKGGHSGGEIHVGLGNANKLLVRFLAGH 238 (485)
T ss_pred cCEEEEeCCC---CCCeEEEeCCCcceEEEEEEEEEEecCCCceEEEEEEECCCCcCChHHHCCCCccHHHHHHHHHHHh
Confidence 7999998653 2343321 111 0 11577899999999 999999 899999 9999999999985
Q ss_pred H
Q 024905 242 Q 242 (260)
Q Consensus 242 ~ 242 (260)
.
T Consensus 239 ~ 239 (485)
T PRK15026 239 A 239 (485)
T ss_pred H
Confidence 4
No 51
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=99.96 E-value=4.4e-28 Score=225.43 Aligned_cols=201 Identities=17% Similarity=0.229 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhCCCCeEeecCCceEEEEEcCC----CCcEEEEEeccCCCCCCCC---
Q 024905 38 DWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSG----SRPVVVLRADMDALPLQEL--- 110 (260)
Q Consensus 38 ~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nlia~~~~~----~~~~i~l~~H~DtVp~~~~--- 110 (260)
+++++++++|++|||+|++|.++++|+.++|+++|+++++. ..+|+++++++. +.|+|+|.||+||||++..
T Consensus 4 ~~~~~~l~~l~~i~s~s~~e~~~~~~l~~~l~~~G~~~~~~-~~~n~~~~~~~~~g~~~~~~l~l~~HlDtV~~~~~~~~ 82 (477)
T TIGR01893 4 SRVFKYFEEISKIPRPSKNEKEVSNFIVNWAKKLGLEVKQD-EVGNVLIRKPATPGYENHPPIVLQGHMDMVCEKNEDSL 82 (477)
T ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHcCCeEEEe-CCCeEEEEEcCCCCCCCCCeEEEEeeccccCCCCCCCC
Confidence 56788999999999999999999999999999999998764 578999998642 2489999999999998643
Q ss_pred CCCccc---c-ccCCccccCCC------cHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC-CChHHHHHcCCCCCC
Q 024905 111 VEWEHK---S-KIDGKMHACGH------DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEGALGDS 179 (260)
Q Consensus 111 ~~w~~~---~-~~~g~~~g~G~------kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g-~G~~~~~~~g~~~~~ 179 (260)
.+|..+ + ++||++||||+ |+++++++.+++. .+ .++++|.++|++|||.| .|++++..+.+ ..
T Consensus 83 ~~w~~~p~~~~~~~~~i~GrG~~lg~D~k~gva~~l~~~~~---~~-~~~~~i~~~~~~dEE~g~~Gs~~l~~~~~--~~ 156 (477)
T TIGR01893 83 HDFEKDPIELIIDGDWLKARGTTLGADNGIGVAMGLAILED---NN-LKHPPLELLFTVDEETGMDGALGLDENWL--SG 156 (477)
T ss_pred CCCCCCCeEEEEeCCEEEECCccccccccHHHHHHHHHHhc---CC-CCCCCEEEEEEeccccCchhhhhcChhhc--CC
Confidence 357543 3 56899999874 6888888877653 22 35679999999999988 79999876532 23
Q ss_pred ceEEEecccC------CCCCcc-eE----eecccccceeeEEEEEEEc-cCCCcC-CCCCCc-CHHHHHHHHHHHHHHHH
Q 024905 180 EAIFGMHIDV------GIPTGS-IA----SISGPHLAATSVFNVKVEG-RGGHAA-MPHSTI-DPILTASSVILALQQLI 245 (260)
Q Consensus 180 d~~i~~~~~~------~~~~~~-~~----~~~g~~~~G~~~~~i~v~G-~~~Hs~-~p~~g~-nAi~~~~~~i~~l~~~~ 245 (260)
+++++.++.. +.+.+. .. ......++|..+++|+++| +++||| .|+.++ ||+..++++|.++++..
T Consensus 157 ~~~~~~d~~~~~~~~~g~~~~~~~~~~~e~~~e~~~kG~~~~~i~~~G~~~~Hsg~~p~~~r~nAi~~aa~~i~~l~~~~ 236 (477)
T TIGR01893 157 KILINIDSEEEGEFIVGCAGGRNVDITFPVKYEKFTKNEEGYQISLKGLKGGHSGADIHKGRANANKLMARVLNELKENL 236 (477)
T ss_pred cEEEEecCCCCCeEEEECCCCeeEEEEEEEEEEecCCCceEEEEEEeCcCCCcCccccCCCCcCHHHHHHHHHHhhhhcC
Confidence 5566543210 111111 00 0001125789999999999 999998 699996 99999999999998763
No 52
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=99.96 E-value=4.1e-28 Score=221.75 Aligned_cols=198 Identities=14% Similarity=0.149 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHHhCCC---------CCcchHHHHHHHHHHHHhCCCCeEeecCCceEEEEEcCC-CCcEEEEEeccCCCC
Q 024905 37 KDWLVSVRRQIHENPE---------LLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSG-SRPVVVLRADMDALP 106 (260)
Q Consensus 37 ~~~~~~~~~~l~~ips---------~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nlia~~~~~-~~~~i~l~~H~DtVp 106 (260)
.+++++.+++|++|+| .+++|.++++||.++|+++|+++++ +.++|+++++++. ++|+|+|+||+||||
T Consensus 9 ~~~~~~~~~~~~~~~s~~~g~~~~s~~~~e~~~~~~l~~~l~~~G~~~~~-~~~~nl~a~~~g~~~~~~l~l~gH~DtVp 87 (412)
T PRK12892 9 GQRVLDDLMELAAIGAAKTGVHRPTYSDAHVAARRRLAAWCEAAGLAVRI-DGIGNVFGRLPGPGPGPALLVGSHLDSQN 87 (412)
T ss_pred HHHHHHHHHHHHccCCCCCCeeeCCCCHHHHHHHHHHHHHHHHcCCEEEE-cCCCcEEEEecCCCCCCeEEEEccccCCC
Confidence 3567888888888866 5667999999999999999999986 4678999999764 458999999999999
Q ss_pred CCCCCCCccccccCCccccCCCcHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCC-----C-CChHHHHHcCC-----
Q 024905 107 LQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEG-----G-AGAFHMIKEGA----- 175 (260)
Q Consensus 107 ~~~~~~w~~~~~~~g~~~g~G~kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~-----g-~G~~~~~~~g~----- 175 (260)
++ |+.||+ +++++++.|++.|++.+..++++|.|++++|||. + .|+++++.+..
T Consensus 88 ~~------------g~~dg~---~Gvaa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~ 152 (412)
T PRK12892 88 LG------------GRYDGA---LGVVAGLEAARALNEHGIATRHPLDVVAWCDEEGSRFTPGFLGSRAYAGRLDPADAL 152 (412)
T ss_pred CC------------Ccccch---HHHHHHHHHHHHHHHcCCCCCCCeEEEEecCcccccccCccccHHHHHcCCCHHHHH
Confidence 64 445554 5799999999999998888999999999999997 3 48888874210
Q ss_pred -----C-------------CCCceEEEec-----------ccC---CCCCcceEeecccccceeeEEEEEEEccCCCcC-
Q 024905 176 -----L-------------GDSEAIFGMH-----------IDV---GIPTGSIASISGPHLAATSVFNVKVEGRGGHAA- 222 (260)
Q Consensus 176 -----~-------------~~~d~~i~~~-----------~~~---~~~~~~~~~~~g~~~~G~~~~~i~v~G~~~Hs~- 222 (260)
. -..|.+++.+ .+. .++++. ...+..+++|..|++|+++|+++|++
T Consensus 153 ~~~~~~~~~~~~~~~~~~g~~~d~~~~~ep~~~~~~~e~~~~~g~~~e~~~~-~~~i~~~~kG~~~~~i~v~G~~aHa~~ 231 (412)
T PRK12892 153 AARCRSDGVPLRDALAAAGLAGRPRPAADRARPKGYLEAHIEQGPVLEQAGL-PVGVVTGIVGIWQYRITVTGEAGHAGT 231 (412)
T ss_pred hCccCCCCcCHHHHHHHcCCChhhcccccccCccEEEEEEeccCHhHhhCCC-cEEEEEEeccceEEEEEEEEECCCCCC
Confidence 0 0022333321 110 111121 01123458999999999999999998
Q ss_pred CCC-CCcCHHHHHHHHHHHHHHHHhhcCCC
Q 024905 223 MPH-STIDPILTASSVILALQQLISREADP 251 (260)
Q Consensus 223 ~p~-~g~nAi~~~~~~i~~l~~~~~~~~~p 251 (260)
.|+ .|.|||..+++++.+|+++..+...|
T Consensus 232 ~p~~~g~nAi~~a~~~i~~l~~~~~~~~~~ 261 (412)
T PRK12892 232 TPMALRRDAGLAAAEMIAAIDEHFPRVCGP 261 (412)
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHhcCCC
Confidence 575 57899999999999999977655444
No 53
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=99.96 E-value=1.6e-27 Score=218.07 Aligned_cols=192 Identities=17% Similarity=0.245 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHHhC----------CCCCcchHHHHHHHHHHHHhCCCCeEeecCCceEEEEEcCC--CCcEEEEEeccCC
Q 024905 37 KDWLVSVRRQIHEN----------PELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSG--SRPVVVLRADMDA 104 (260)
Q Consensus 37 ~~~~~~~~~~l~~i----------ps~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nlia~~~~~--~~~~i~l~~H~Dt 104 (260)
.+.+++++++|++| ||+|++|.++++||.++|+++||++++ +.++|+++++++. ++|+|+|+||+||
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~g~~~~s~s~~e~~~a~~l~~~l~~~g~~~~~-~~~~nl~a~~~g~~~~~~~l~l~gH~Dt 84 (413)
T PRK09290 6 AERLWARLDELAKIGATPDGGVTRLALSPEDLQARDLFAEWMEAAGLTVRV-DAVGNLFGRLEGRDPDAPAVLTGSHLDT 84 (413)
T ss_pred HHHHHHHHHHHhcccCCCCCceeeccCCHHHHHHHHHHHHHHHHcCCEEEE-cCCCcEEEEecCCCCCCCEEEEecCccC
Confidence 35667777888777 377889999999999999999999986 4678999999763 3589999999999
Q ss_pred CCCCCCCCCccccccCCccccCCCcHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC------CChHHHHHc-----
Q 024905 105 LPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG------AGAFHMIKE----- 173 (260)
Q Consensus 105 Vp~~~~~~w~~~~~~~g~~~g~G~kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g------~G~~~~~~~----- 173 (260)
||++ |.. ++|+++|+++.|+++|++.+..++++|.|++++|||.| .|++.+++.
T Consensus 85 Vp~~------------g~~---d~k~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~~G~~~~~~~~~~~~ 149 (413)
T PRK09290 85 VPNG------------GRF---DGPLGVLAGLEAVRTLNERGIRPRRPIEVVAFTNEEGSRFGPAMLGSRVFTGALTPED 149 (413)
T ss_pred CCCC------------CCc---CCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEcCCccccccCccccHHHHHcccCHHH
Confidence 9974 222 44789999999999999888778899999999999973 477766532
Q ss_pred -------------------CCCCCCceEEEe--cccC--------------CCCCcceEeecccccceeeEEEEEEEccC
Q 024905 174 -------------------GALGDSEAIFGM--HIDV--------------GIPTGSIASISGPHLAATSVFNVKVEGRG 218 (260)
Q Consensus 174 -------------------g~~~~~d~~i~~--~~~~--------------~~~~~~~~~~~g~~~~G~~~~~i~v~G~~ 218 (260)
+ + +.|++++. +|.. .+|++.. ..+..+++|..|++|+++|++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~-~-~~d~~i~~~~ept~~~~~~~~~~~~~~~~e~~~~~-~~i~~~~kG~~~~~i~v~Gk~ 226 (413)
T PRK09290 150 ALALRDADGVSFAEALAAIG-Y-DGDEAVGAARARRDIKAFVELHIEQGPVLEAEGLP-IGVVTGIVGQRRYRVTFTGEA 226 (413)
T ss_pred HHhccCCCCCCHHHHHHHcC-C-ChhhccccccCCCCccEEEEEEeccCHHHHHCCCc-EEEEeeeeccEEEEEEEEEEC
Confidence 2 1 24555532 1110 0222211 122345899999999999999
Q ss_pred CCcC-CC-CCCcCHHHHHHHHHHHHHHHHhh
Q 024905 219 GHAA-MP-HSTIDPILTASSVILALQQLISR 247 (260)
Q Consensus 219 ~Hs~-~p-~~g~nAi~~~~~~i~~l~~~~~~ 247 (260)
+|++ .| +.|+|||..+++++..|+++..+
T Consensus 227 aHas~~P~~~g~NAI~~~~~~i~~l~~l~~~ 257 (413)
T PRK09290 227 NHAGTTPMALRRDALLAAAEIILAVERIAAA 257 (413)
T ss_pred CCCCCCCchhccCHHHHHHHHHHHHHHHHHh
Confidence 9998 68 57899999999999999987654
No 54
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=99.95 E-value=6.1e-27 Score=214.05 Aligned_cols=194 Identities=16% Similarity=0.252 Sum_probs=147.8
Q ss_pred HHHHHHHHHHHHhCCCC----------CcchHHHHHHHHHHHHhCCCCeEeecCCceEEEEEcCC--CCcEEEEEeccCC
Q 024905 37 KDWLVSVRRQIHENPEL----------LFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSG--SRPVVVLRADMDA 104 (260)
Q Consensus 37 ~~~~~~~~~~l~~ips~----------s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nlia~~~~~--~~~~i~l~~H~Dt 104 (260)
.+++++++++|++|||. |++|.++++||.++|+++||+++. +...|+++++++. ++|+|+|+||+||
T Consensus 9 ~~~~~~~l~~l~~i~s~~~~~~~~~~~s~~e~~~~~~l~~~l~~~G~~~~~-~~~~n~~a~~~g~~~~~~~l~l~~H~Dt 87 (412)
T PRK12893 9 GERLWDSLMALARIGATPGGGVTRLALTDEDREARDLLAQWMEEAGLTVSV-DAIGNLFGRRAGTDPDAPPVLIGSHLDT 87 (412)
T ss_pred HHHHHHHHHHHhcccCCCCCcEEeccCCHHHHHHHHHHHHHHHHcCCEEEE-cCCCcEEEEeCCCCCCCCEEEEEecccC
Confidence 46788999999999964 445899999999999999999986 4567999999654 2589999999999
Q ss_pred CCCCCCCCCccccccCCccccCCCcHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC------CChHHHHHcCC---
Q 024905 105 LPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG------AGAFHMIKEGA--- 175 (260)
Q Consensus 105 Vp~~~~~~w~~~~~~~g~~~g~G~kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g------~G~~~~~~~g~--- 175 (260)
||++ |..|| |++++++|.|+++|++.+..++++|.|+|++|||.| .|+.++.+...
T Consensus 88 Vp~~------------g~~dg---k~gvaa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~~~~~~G~~~~~~~~~~~~ 152 (412)
T PRK12893 88 QPTG------------GRFDG---ALGVLAALEVVRTLNDAGIRTRRPIEVVSWTNEEGARFAPAMLGSGVFTGALPLDD 152 (412)
T ss_pred CCCC------------Ccccc---hhhHHHHHHHHHHHHHcCCCCCCCeEEEEEccccccccccccccHHHHhCcCChHH
Confidence 9964 33344 678999999999999888788999999999999974 37776764311
Q ss_pred ---------------------C-------CCCceEEEecccCCC---CCcceEeecccccceeeEEEEEEEccCCCcC-C
Q 024905 176 ---------------------L-------GDSEAIFGMHIDVGI---PTGSIASISGPHLAATSVFNVKVEGRGGHAA-M 223 (260)
Q Consensus 176 ---------------------~-------~~~d~~i~~~~~~~~---~~~~~~~~~g~~~~G~~~~~i~v~G~~~Hs~-~ 223 (260)
. .+.+..+.+|..++. +.+. ...+..+++|..|++|+++|+++|+| .
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~i~~~~kG~~~~~i~v~G~~aHas~~ 231 (412)
T PRK12893 153 ALARRDADGITLGEALARIGYRGTARVGRRAVDAYLELHIEQGPVLEAEGL-PIGVVTGIQGIRWLEVTVEGQAAHAGTT 231 (412)
T ss_pred HHhccCCCCCCHHHHHHHcCCCcccccccCCccEEEEEEeccCHHHHHCCC-cEEEEeeecccEEEEEEEEEECCCcCCC
Confidence 0 012233334432110 0110 01223458999999999999999998 4
Q ss_pred CC-CCcCHHHHHHHHHHHHHHHHhh
Q 024905 224 PH-STIDPILTASSVILALQQLISR 247 (260)
Q Consensus 224 p~-~g~nAi~~~~~~i~~l~~~~~~ 247 (260)
|+ .|+|||..+++++.+|+++..+
T Consensus 232 p~~~G~NAI~~a~~~i~~l~~~~~~ 256 (412)
T PRK12893 232 PMAMRRDALVAAARIILAVERIAAA 256 (412)
T ss_pred cchhccCHHHHHHHHHHHHHHHHHh
Confidence 85 7999999999999999988764
No 55
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=99.95 E-value=2.6e-26 Score=201.49 Aligned_cols=208 Identities=18% Similarity=0.227 Sum_probs=163.2
Q ss_pred HHHHHHHHHHHHhCCCCCc--chH-HHHHHHHHHHHhCCCCeEe---ecCCceEEEEEcCC-C-CcEEEEEeccCCCCCC
Q 024905 37 KDWLVSVRRQIHENPELLF--EEH-NTSALIRRELDKLGIPYAY---PVAKTGIVAQIGSG-S-RPVVVLRADMDALPLQ 108 (260)
Q Consensus 37 ~~~~~~~~~~l~~ips~s~--~e~-~~~~~l~~~l~~~G~~~~~---~~~~~nlia~~~~~-~-~~~i~l~~H~DtVp~~ 108 (260)
+...+..++++++||++-. +-. .+++|+.++.+.+|..++. .++.++++.+|.|. + -|+|+|++|+||||+-
T Consensus 24 ~~~~v~~f~eylRi~Tv~p~~dy~~a~~~Fl~~~a~~l~l~~~~i~~~p~~~~~l~T~~GS~P~L~silL~SH~DVVP~f 103 (420)
T KOG2275|consen 24 ENISVTRFREYLRIPTVQPNPDYTIACADFLKKYAKSLGLTVQKIESEPGKYVLLYTWLGSDPELPSILLNSHTDVVPVF 103 (420)
T ss_pred cchHHHHHHHHhhccccccCCCccHHHHHHHHHHHHhcCCceeEEEecCceeEEEEEeeCCCCCccceeeeccccccCCC
Confidence 3456777888999998754 334 7899999999999998754 35688999999876 3 4899999999999985
Q ss_pred CCCCCcccc-----ccCCccccCCC---cHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC--CChHHHHHcCCCCC
Q 024905 109 ELVEWEHKS-----KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG--AGAFHMIKEGALGD 178 (260)
Q Consensus 109 ~~~~w~~~~-----~~~g~~~g~G~---kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g--~G~~~~~~~g~~~~ 178 (260)
. +.|.++| .++|.|||||+ |+..++++.|++.|+..+.+++++|.+.|++|||.| .|++.+.+...+.+
T Consensus 104 ~-e~W~h~Pfsa~~~~~g~IyaRGaqD~K~~~va~leAir~L~~~g~kp~Rti~lsfvpDEEi~G~~Gm~~fa~~~~~~~ 182 (420)
T KOG2275|consen 104 R-EKWTHPPFSAFKDEDGNIYARGAQDMKCVGVAYLEAIRNLKASGFKPKRTIHLSFVPDEEIGGHIGMKEFAKTEEFKK 182 (420)
T ss_pred c-ccCccCCccccccCCCcEEeccccchHhHHHHHHHHHHHHHhcCCCcCceEEEEecCchhccCcchHHHHhhhhhhcc
Confidence 4 4898775 35789999985 899999999999999999999999999999999966 79999887433444
Q ss_pred CceEEEecccCCCCCcceEeecccccceeeEEEEEEEccCCCcCCCCCCcCHHHHHHHHHHHHHHHHhhc
Q 024905 179 SEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISRE 248 (260)
Q Consensus 179 ~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~ 248 (260)
....++++- ++ ++..-...++.++||..|++|+++|.++|||.|.. ..|+.++.++++.+++...++
T Consensus 183 l~~~filDE-G~-~se~d~~~vfyaEkg~w~~~v~~~G~~GHss~~~~-nTa~~~l~klv~~~~~fr~~q 249 (420)
T KOG2275|consen 183 LNLGFILDE-GG-ATENDFATVFYAEKGPWWLKVTANGTPGHSSYPPP-NTAIEKLEKLVESLEEFREKQ 249 (420)
T ss_pred cceeEEecC-CC-CCcccceeEEEEeeceeEEEEEecCCCCCCCCCCC-ccHHHHHHHHHHHHHHhHHHH
Confidence 445555542 21 12211234567799999999999999999997532 478888889999888877544
No 56
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=99.95 E-value=4e-26 Score=208.82 Aligned_cols=179 Identities=18% Similarity=0.190 Sum_probs=139.4
Q ss_pred CCCcchHHHHHHHHHHHHhCCCCeEeecCCceEEEEEcCC-C-CcEEEEEeccCCCCCCCCCCCccccccCCccccCCCc
Q 024905 52 ELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSG-S-RPVVVLRADMDALPLQELVEWEHKSKIDGKMHACGHD 129 (260)
Q Consensus 52 s~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nlia~~~~~-~-~~~i~l~~H~DtVp~~~~~~w~~~~~~~g~~~g~G~k 129 (260)
+.+++|.++++||.++|++.|+++++ +..+|+++++++. + +|+|+|+||+||||++ |. .|+|
T Consensus 34 ~~~~~e~~~~~~l~~~l~~~G~~v~~-~~~gNl~a~~~g~~~~~~~l~~~~H~DtVp~g------------g~---~D~k 97 (414)
T PRK12891 34 ALTDGDREARDLFVAWARDAGCTVRV-DAMGNLFARRAGRDPDAAPVMTGSHADSQPTG------------GR---YDGI 97 (414)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEE-CCCCCEEEEecCCCCCCCeEEEEecccCCCCC------------cc---ccch
Confidence 44567999999999999999999987 4678999999764 2 5899999999999964 21 3789
Q ss_pred HHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC------CChHHH------------------------HHcCCCC--
Q 024905 130 VHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG------AGAFHM------------------------IKEGALG-- 177 (260)
Q Consensus 130 g~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g------~G~~~~------------------------~~~g~~~-- 177 (260)
+++++++.|+++|++.+.+++++|.|++++|||.+ .|++.+ .+.|+..
T Consensus 98 ~Gv~a~l~a~~~l~~~~~~~~~~i~v~~~~dEE~~~f~~~~~Gs~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 177 (414)
T PRK12891 98 YGVLGGLEVVRALNDAGIETERPVDVVIWTNEEGSRFAPSMVGSGVFFGVYPLEYLLSRRDDTGRTLGEHLARIGYAGAE 177 (414)
T ss_pred hhHHHHHHHHHHHHHcCCCCCCCeEEEEecccccCcCCcccccHHHHhCCCCHHHHHhccCCCCCCHHHHHHHCCCCccc
Confidence 99999999999999999889999999999999975 266533 3444321
Q ss_pred -----CCceEEEecccCC---CCCcceEeecccccceeeEEEEEEEccCCCcC-CCC-CCcCHHHHHHHHHHHHHHHHhh
Q 024905 178 -----DSEAIFGMHIDVG---IPTGSIASISGPHLAATSVFNVKVEGRGGHAA-MPH-STIDPILTASSVILALQQLISR 247 (260)
Q Consensus 178 -----~~d~~i~~~~~~~---~~~~~~~~~~g~~~~G~~~~~i~v~G~~~Hs~-~p~-~g~nAi~~~~~~i~~l~~~~~~ 247 (260)
..++.+.+|.+++ ++++. ...+..+++|..|++|+++|+++|+| .|+ .|+|||..+++++..|+++..+
T Consensus 178 ~~~~~~~~~~~e~h~e~g~vle~~~~-~~~iv~~~kG~~~~~v~v~Gk~aHa~~~P~~~g~nAI~~aa~~i~~l~~~~~~ 256 (414)
T PRK12891 178 PVGGYPVHAAYELHIEQGAILERAGK-TIGVVTAGQGQRWYEVTLTGVDAHAGTTPMAFRRDALVGAARMIAFLDALGRR 256 (414)
T ss_pred ccccCCCCEEEEEEeCCCHHHHHCCC-cEEEEeeccCcEEEEEEEEeECCCCCCCCcccccCHHHHHHHHHHHHHHHHHh
Confidence 1234555555433 12221 11223458999999999999999998 686 5899999999999999988664
No 57
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=99.95 E-value=7.7e-26 Score=206.93 Aligned_cols=191 Identities=17% Similarity=0.216 Sum_probs=141.0
Q ss_pred HHHHHHHHHHhC---------CCCCcchHHHHHHHHHHHHhCCCCeEeecCCceEEEEEcCC--CCcEEEEEeccCCCCC
Q 024905 39 WLVSVRRQIHEN---------PELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSG--SRPVVVLRADMDALPL 107 (260)
Q Consensus 39 ~~~~~~~~l~~i---------ps~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nlia~~~~~--~~~~i~l~~H~DtVp~ 107 (260)
++++.+.++.+| ||++++|.++++||.++|+++||++++. .++|+++++++. ++|+|+|+||+||||+
T Consensus 10 ~~~~~~~~~~~i~~~~~~~~~~s~~~~e~~~~~~l~~~l~~~G~~~~~~-~~~nlia~~~g~~~~~~~l~~~~H~DtVp~ 88 (414)
T PRK12890 10 RLLARLEELAAIGRDGPGWTRLALSDEERAARALLAAWMRAAGLEVRRD-AAGNLFGRLPGRDPDLPPLMTGSHLDTVPN 88 (414)
T ss_pred HHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCCCEEEEc-CCCcEEEEeCCCCCCCCEEEEeCcccCCCC
Confidence 344555555544 4788999999999999999999999874 578999999764 3589999999999996
Q ss_pred CCCCCCccccccCCccccCCCcHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC------CChHHHHHc--------
Q 024905 108 QELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG------AGAFHMIKE-------- 173 (260)
Q Consensus 108 ~~~~~w~~~~~~~g~~~g~G~kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g------~G~~~~~~~-------- 173 (260)
+ |. .++|+++++++.+++.|++.+..++++|.|++++|||.| .|++.+.+.
T Consensus 89 ~------------g~---~D~~~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~~G~~~~~~~~~~~~~~~ 153 (414)
T PRK12890 89 G------------GR---YDGILGVLAGLEVVAALREAGIRPPHPLEVIAFTNEEGVRFGPSMIGSRALAGTLDVEAVLA 153 (414)
T ss_pred C------------CC---cCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEecccccccCCccccHHHHHcccChHHHHh
Confidence 3 22 366889999999999999888778999999999999963 466554332
Q ss_pred ----------------CCCCCCceEE-------------EecccCCC---CCcceEeecccccceeeEEEEEEEccCCCc
Q 024905 174 ----------------GALGDSEAIF-------------GMHIDVGI---PTGSIASISGPHLAATSVFNVKVEGRGGHA 221 (260)
Q Consensus 174 ----------------g~~~~~d~~i-------------~~~~~~~~---~~~~~~~~~g~~~~G~~~~~i~v~G~~~Hs 221 (260)
|.. .|.++ .+|...+. +.+. ...+..+++|..|++|+++|+++|+
T Consensus 154 ~~~~~~~~~~~~~~~~g~~--~~~~~~~~~ep~~~~~~~~~h~~~g~~~~~~~~-~~~i~~~~kG~~~~~i~v~Gk~aHa 230 (414)
T PRK12890 154 TRDDDGTTLAEALRRIGGD--PDALPGALRPPGAVAAFLELHIEQGPVLEAEGL-PIGVVTAIQGIRRQAVTVEGEANHA 230 (414)
T ss_pred ccCCCCCCHHHHHHHcCCC--hhhccccccCCCCccEEEEEeeCcCHHHHhCCC-ceEEEEeecCcEEEEEEEEEECCCC
Confidence 211 22222 11111000 0011 0112245899999999999999999
Q ss_pred C-CCCC-CcCHHHHHHHHHHHHHHHHhhc
Q 024905 222 A-MPHS-TIDPILTASSVILALQQLISRE 248 (260)
Q Consensus 222 ~-~p~~-g~nAi~~~~~~i~~l~~~~~~~ 248 (260)
| .|+. +.|||..+++++.+|+++..+.
T Consensus 231 s~~P~~~g~nAI~~~~~~i~~l~~~~~~~ 259 (414)
T PRK12890 231 GTTPMDLRRDALVAAAELVTAMERRARAL 259 (414)
T ss_pred CcCChhhccCHHHHHHHHHHHHHHHHHhc
Confidence 8 5865 4799999999999999987654
No 58
>PRK08554 peptidase; Reviewed
Probab=99.94 E-value=5.9e-26 Score=208.83 Aligned_cols=195 Identities=20% Similarity=0.241 Sum_probs=141.5
Q ss_pred HHHHHHHHHHhCCCCCcc------hHHHHHHHHHHHHhCCCCeEee--cCCceEEEEEcCCCCcEEEEEeccCCCCCCCC
Q 024905 39 WLVSVRRQIHENPELLFE------EHNTSALIRRELDKLGIPYAYP--VAKTGIVAQIGSGSRPVVVLRADMDALPLQEL 110 (260)
Q Consensus 39 ~~~~~~~~l~~ips~s~~------e~~~~~~l~~~l~~~G~~~~~~--~~~~nlia~~~~~~~~~i~l~~H~DtVp~~~~ 110 (260)
++++++++|++|||+++. +.++++|+.++|+++||+++.. .+++|+++.++++ .|+|+|+||+||||+++
T Consensus 2 ~~~~~l~~LV~i~S~~~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~l~~~~~~~-~~~l~l~gH~DtVp~~~- 79 (438)
T PRK08554 2 DVLELLSSLVSFETVNDPSKGIKPSKECPKFIKDTLESWGIESELIEKDGYYAVYGEIGEG-KPKLLFMAHFDVVPVNP- 79 (438)
T ss_pred hHHHHHHHHhCCCCCCCcccCcchHHHHHHHHHHHHHHCCCeEEEEecCCceEEEEEeCCC-CCEEEEEeccccCCCCc-
Confidence 467889999999998743 5889999999999999998643 2457999998533 47899999999999864
Q ss_pred CCCc---ccc-ccCCccccCC---CcHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC-CChHHHHHcC--CCCCCc
Q 024905 111 VEWE---HKS-KIDGKMHACG---HDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEG--ALGDSE 180 (260)
Q Consensus 111 ~~w~---~~~-~~~g~~~g~G---~kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g-~G~~~~~~~g--~~~~~d 180 (260)
..|. |.+ ++||++|||| ||++++++++|++.|++.+ ++++|.|++++|||.| .+..++++.. ....+|
T Consensus 80 ~~w~~~Pf~~~~~~g~lyGrG~~DmKgg~aa~l~A~~~l~~~~--~~~~i~l~~~~dEE~g~~~~~~~~~~~~~~~~~~~ 157 (438)
T PRK08554 80 EEWNTEPFKLTVKGDKAYGRGSADDKGNVASVMLALKELSKEP--LNGKVIFAFTGDEEIGGAMAMHIAEKLREEGKLPK 157 (438)
T ss_pred cccccCCceeEEECCEEEECCcccchHHHHHHHHHHHHHHhcC--CCCCEEEEEEcccccCccccHHHHHHHHhcCCCCC
Confidence 3465 443 5689999998 6999999999999998743 6789999999999987 4445655431 112468
Q ss_pred eEEEecccCCCCCcceEeecccccce----------------e---eEEEEEEEccC-CCcCCCCCCcC--HHHHHHHHH
Q 024905 181 AIFGMHIDVGIPTGSIASISGPHLAA----------------T---SVFNVKVEGRG-GHAAMPHSTID--PILTASSVI 238 (260)
Q Consensus 181 ~~i~~~~~~~~~~~~~~~~~g~~~~G----------------~---~~~~i~v~G~~-~Hs~~p~~g~n--Ai~~~~~~i 238 (260)
++|+.++....+ +. ..++| . .++.++++|.+ +|++.|..|.| |+..+++++
T Consensus 158 ~~iv~Ept~~~~-----~~--~~~kg~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Ha~~~~~g~~~~~i~~~~~~~ 230 (438)
T PRK08554 158 YMINADGIGMKP-----II--RRRKGFGVTIRVPSEKVKVKGKLREQTFEIRTPVVETRHAAYFLPGVDTHPLIAASHFL 230 (438)
T ss_pred EEEEeCCCCCcc-----hh--hcCCceEEEEEecccccccccceeeeeeceeecccCccccccccCCcCchHHHHHHHHH
Confidence 999865422111 10 01122 2 24455555664 99998776665 588888888
Q ss_pred HHHHHH
Q 024905 239 LALQQL 244 (260)
Q Consensus 239 ~~l~~~ 244 (260)
.++..+
T Consensus 231 ~~~~~~ 236 (438)
T PRK08554 231 RESNVL 236 (438)
T ss_pred hhcCce
Confidence 777643
No 59
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=99.93 E-value=4.1e-24 Score=194.82 Aligned_cols=184 Identities=19% Similarity=0.294 Sum_probs=138.4
Q ss_pred CCCCcchHHHHHHHHHHHHhCCCCeEeecCCceEEEEEcCC-C-CcEEEEEeccCCCCCCCCCCCccccccCCccccCCC
Q 024905 51 PELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSG-S-RPVVVLRADMDALPLQELVEWEHKSKIDGKMHACGH 128 (260)
Q Consensus 51 ps~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nlia~~~~~-~-~~~i~l~~H~DtVp~~~~~~w~~~~~~~g~~~g~G~ 128 (260)
.|+|++|.++++||.++|+++|++++. +..+|+++++++. + +|.|+|+||+||||.+ |+.+|+
T Consensus 24 ~~~~~~e~~~~~~l~~~~~~~G~~~~~-~~~~nl~a~~~g~~~~~~~l~~~~H~DtV~~g------------g~~dg~-- 88 (401)
T TIGR01879 24 LALSPEDREAQDLFKKRMRAAGLEVRF-DEVGNLIGRKEGTEPPLEVVLSGSHIDTVVNG------------GNFDGQ-- 88 (401)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEE-ecCCcEEEEecCCCCCCCEEEEecccccCCCC------------CccCCH--
Confidence 345778999999999999999999986 4678999999764 3 5899999999999963 444553
Q ss_pred cHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCC-----C-CChHHHHHcC-------CC-------------------
Q 024905 129 DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEG-----G-AGAFHMIKEG-------AL------------------- 176 (260)
Q Consensus 129 kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~-----g-~G~~~~~~~g-------~~------------------- 176 (260)
.++++++.++++|++.+.+++++|.|++++|||. + .|++.+.... ..
T Consensus 89 -~gvaa~l~a~~~l~~~g~~~~~~i~~~~~~dEE~~~f~~~~~Gs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~ 167 (401)
T TIGR01879 89 -LGVLAGIEVVDALKEAYVVPLHPIEVVAFTEEEGSRFPYGMWGSRNMVGLANPEDVRNICDAKGISFAEAMKACGPDLP 167 (401)
T ss_pred -HHHHHHHHHHHHHHHcCCCCCCCeEEEEEeCCcCcCcccccccHHHHhcccchhHHHhCcCCCCCCHHHHHHHcCCCcc
Confidence 4789999999999999888999999999999996 4 5787775321 00
Q ss_pred -------CCCceEEEecccCCC---CCcceEeecccccceeeEEEEEEEccCCCcCC-CC-CCcCHHHHHHHHHHHHHHH
Q 024905 177 -------GDSEAIFGMHIDVGI---PTGSIASISGPHLAATSVFNVKVEGRGGHAAM-PH-STIDPILTASSVILALQQL 244 (260)
Q Consensus 177 -------~~~d~~i~~~~~~~~---~~~~~~~~~g~~~~G~~~~~i~v~G~~~Hs~~-p~-~g~nAi~~~~~~i~~l~~~ 244 (260)
.+.+..+.+|.+.+. +.|. ...+..+++|..|++|+++|+++|++. |+ .++||+..+++++..|+++
T Consensus 168 ~~~~~~~~~~~~~~e~Hieqg~~l~~~g~-~~~v~~~~~G~~~~~i~v~G~~aHa~~~p~~~g~nAi~~aa~~i~~l~~l 246 (401)
T TIGR01879 168 NQPLRPRGDIKAYVELHIEQGPVLESNGQ-PIGVVNAIAGQRWYKVTLNGESNHAGTTPMSLRRDPLVAASRIIHQVEEK 246 (401)
T ss_pred cccccccccccEEEEEEEcCCcChhhCCC-eEEEEEEecCcEEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHH
Confidence 011223344433221 1121 112234589999999999999999985 64 5789999999999999998
Q ss_pred HhhcCCC
Q 024905 245 ISREADP 251 (260)
Q Consensus 245 ~~~~~~p 251 (260)
..+..+|
T Consensus 247 ~~~~~~~ 253 (401)
T TIGR01879 247 AKRMGDP 253 (401)
T ss_pred HHhcCCC
Confidence 7654333
No 60
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism]
Probab=99.92 E-value=4.3e-24 Score=186.21 Aligned_cols=216 Identities=19% Similarity=0.241 Sum_probs=166.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhCCCCCcc------hHHHHHHHHHHHHhCCCCeEee-------------cCCceEEE
Q 024905 26 TNQVMISAQQDKDWLVSVRRQIHENPELLFE------EHNTSALIRRELDKLGIPYAYP-------------VAKTGIVA 86 (260)
Q Consensus 26 ~~~i~~~i~~~~~~~~~~~~~l~~ips~s~~------e~~~~~~l~~~l~~~G~~~~~~-------------~~~~nlia 86 (260)
..++.++++.+.+++++.|++.++|+|+|.. -.++++|++++|+++|-+++.. +..+.+.+
T Consensus 4 l~~~fq~id~~~de~~~~L~e~v~iqsvs~dp~~r~~v~rm~~~~~~~l~~lG~~~~l~dlg~q~~~~g~~v~lPpvvl~ 83 (473)
T KOG2276|consen 4 LTKVFQSIDLNKDEFINTLREAVAIQSVSADPTKRLEVRRMADWLRDYLTKLGAPLELVDLGYQSLPDGQIVPLPPVVLG 83 (473)
T ss_pred HHHHHHHhhccHHHHHHHHHHHhcccccccCccccHHHHHHHHHHHHHHHHhCCceeeeecccCCCCCCcccccChhhhh
Confidence 3567889999999999999999999999864 3679999999999999766541 12455666
Q ss_pred EEcCCC-CcEEEEEeccCCCCCCCCCCCcccc----ccCCccccCCC---cHHHHHHHHHHHHHHhccCCCCceEEEEee
Q 024905 87 QIGSGS-RPVVVLRADMDALPLQELVEWEHKS----KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQ 158 (260)
Q Consensus 87 ~~~~~~-~~~i~l~~H~DtVp~~~~~~w~~~~----~~~g~~~g~G~---kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~ 158 (260)
+++..+ .++++++||+||+|+..+++|.++| ++||++||||+ ||++++.+.+++++++.++.++.||.++|.
T Consensus 84 ~~Gsdp~KktvlvYgHlDVqpA~~~DgW~TdPF~Lt~~~GkL~GRG~TDdkGPv~~wi~av~a~~~~g~~lpvnv~f~~E 163 (473)
T KOG2276|consen 84 VLGSDPSKKTVLVYGHLDVQPANLEDGWNTDPFTLTEDDGKLFGRGATDDKGPVLSWIHAVKALQQLGIDLPVNVVFVFE 163 (473)
T ss_pred cccCCCCcceEEEEeeeeeeecCCCCCCcCCCeEEEEECCEEeccCcCCCCccchHHHHHHHHHHHhCccccceEEEEEE
Confidence 666553 5899999999999998889997764 67999999996 899999999999999999999999999999
Q ss_pred cCCCCC-CChHHHHHc---CCCCCCceEEEecccCCCCCcceEeecccccceeeEEEEEEEc--cCCCcCCC-CCCcCHH
Q 024905 159 PAEEGG-AGAFHMIKE---GALGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEG--RGGHAAMP-HSTIDPI 231 (260)
Q Consensus 159 ~dEE~g-~G~~~~~~~---g~~~~~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~v~G--~~~Hs~~p-~~g~nAi 231 (260)
+.||.| .|...+++. .++.++|++...+ ....|.-.-....+.+|.+.|.++|+| +-.|||.- ..-.-|+
T Consensus 164 gmEEsgS~~L~~l~~~~kD~~~~~vD~vciSd---nyWlg~kkPcltyGlRG~~yf~i~v~g~~~DlHSGvfGG~~hE~m 240 (473)
T KOG2276|consen 164 GMEESGSEGLDELIEKEKDKFFKDVDFVCISD---NYWLGTKKPCLTYGLRGVIYFQIEVEGPSKDLHSGVFGGVVHEAM 240 (473)
T ss_pred echhccCccHHHHHHHHhhhhhccCCEEEeeC---ceeccCCCcccccccccceeEEEEEeecccccccccccchhHHHH
Confidence 999998 577777653 4566788877643 222222111223345799999999999 56799943 2222566
Q ss_pred HHHHHHHHHHHHH
Q 024905 232 LTASSVILALQQL 244 (260)
Q Consensus 232 ~~~~~~i~~l~~~ 244 (260)
..+..++..|.+.
T Consensus 241 ~dL~~~ms~Lv~~ 253 (473)
T KOG2276|consen 241 NDLVLVMSSLVDI 253 (473)
T ss_pred HHHHHHHHHhcCc
Confidence 6666666665543
No 61
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=99.92 E-value=2.4e-23 Score=197.64 Aligned_cols=195 Identities=15% Similarity=0.204 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHhCCCC-------------CcchHHHHHHHHHHHHhCCCC-eEeecCCceEEEEEcCC--CCcEEEEEec
Q 024905 38 DWLVSVRRQIHENPEL-------------LFEEHNTSALIRRELDKLGIP-YAYPVAKTGIVAQIGSG--SRPVVVLRAD 101 (260)
Q Consensus 38 ~~~~~~~~~l~~ips~-------------s~~e~~~~~~l~~~l~~~G~~-~~~~~~~~nlia~~~~~--~~~~i~l~~H 101 (260)
+.+.+.+.+|.+|+.+ |..+.++.+|+.+||++.|++ ++. |..+|+++++++. +.|.|++.+|
T Consensus 181 ~r~~~~l~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~~~~~~~~~Gl~~v~~-D~~gNv~~~~~g~~~~~p~v~~gSH 259 (591)
T PRK13799 181 ADVMDWAEDIAAHSDPGYADEGALTCTYLSDAHRACANQISDWMRDAGFDEVEI-DAVGNVVGRYKAADDDAKTLITGSH 259 (591)
T ss_pred HHHHHHHHHHHhccCCCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcCCCeEeE-CCCCCEEEEcCCCCCCCCeEEEecc
Confidence 4566777788888631 224678999999999999998 886 5779999999764 3699999999
Q ss_pred cCCCCCCCCCCCccccccCCccccCCCcHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCC-----C-CChHHHH----
Q 024905 102 MDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEG-----G-AGAFHMI---- 171 (260)
Q Consensus 102 ~DtVp~~~~~~w~~~~~~~g~~~g~G~kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~-----g-~G~~~~~---- 171 (260)
+||||. +|+.+|+ .|++++|.+++.|++.+.+++++|.+++.++||+ + .|++.+.
T Consensus 260 lDTV~~------------gG~~DG~---~Gv~a~l~~~~~l~~~~~~~~~~i~vi~~~~EEg~rF~~~~~GS~~~~G~~~ 324 (591)
T PRK13799 260 YDTVRN------------GGKYDGR---EGIFLAIACVKELHEQGERLPFHFEVIAFAEEEGQRFKATFLGSGALIGDFN 324 (591)
T ss_pred ccccCC------------CCccccH---HHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCccCCCccccchHHHhCCCh
Confidence 999994 5788887 6899999999999999999999999999999997 2 3555554
Q ss_pred ----H----cCC---------------C-------CCCceEEEecccCCC--CCcceEeecccccceeeEEEEEEEccCC
Q 024905 172 ----K----EGA---------------L-------GDSEAIFGMHIDVGI--PTGSIASISGPHLAATSVFNVKVEGRGG 219 (260)
Q Consensus 172 ----~----~g~---------------~-------~~~d~~i~~~~~~~~--~~~~~~~~~g~~~~G~~~~~i~v~G~~~ 219 (260)
+ +|. . .++++.+.+|++.|- ......+.+..+++|..+++|+++|+++
T Consensus 325 ~~~~~~~d~~G~~~~~~l~~~g~~~~~~~~~~~~~~~~~a~~ElHIEQgp~Le~~~~~igvV~g~~G~~~~~Itv~Gkaa 404 (591)
T PRK13799 325 MELLDIKDADGISLREAIQHAGHCIDAIPKIARDPADVLGFIEVHIEQGPVLLELDIPLGIVTSIAGSARYICEFIGMAS 404 (591)
T ss_pred HHHHhccCCCCCCHHHHHHHcCCChhhccccccCCCCccEEEEEEeCCCHHHHHCCCcEEEEeeeccceEEEEEEEEECC
Confidence 1 121 0 134567777776541 0111112223457899999999999999
Q ss_pred CcCC-CC-CCcCHHHHHHHHHHHHHHHHhhc
Q 024905 220 HAAM-PH-STIDPILTASSVILALQQLISRE 248 (260)
Q Consensus 220 Hs~~-p~-~g~nAi~~~~~~i~~l~~~~~~~ 248 (260)
|+|. |+ .+.||+..+++++..++++..+.
T Consensus 405 Hag~~Pm~~r~dAi~aaa~ii~~l~~~~~~~ 435 (591)
T PRK13799 405 HAGTTPMDMRKDAAAAAAEIALYIEKRAAQD 435 (591)
T ss_pred CCCCCChhhchhHHHHHHHHHHHHHHHHHhc
Confidence 9995 64 47899999999999999987653
No 62
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=99.90 E-value=1e-21 Score=186.59 Aligned_cols=193 Identities=12% Similarity=0.137 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHhCCCC-------------CcchHHHHHHHHHHHHhCCC-CeEeecCCceEEEEEcCC-C-CcEEEEEec
Q 024905 38 DWLVSVRRQIHENPEL-------------LFEEHNTSALIRRELDKLGI-PYAYPVAKTGIVAQIGSG-S-RPVVVLRAD 101 (260)
Q Consensus 38 ~~~~~~~~~l~~ips~-------------s~~e~~~~~~l~~~l~~~G~-~~~~~~~~~nlia~~~~~-~-~~~i~l~~H 101 (260)
+.+.+.+.+|-+|+.+ |..+.++++|+.++|+++|+ +++. |..+|+++++++. + .|.|++.+|
T Consensus 181 ~r~~~~~~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~l~~~~~~~Gl~~v~~-D~~GNl~~~~~g~~~~~~~v~~gsH 259 (591)
T PRK13590 181 NDVWDWAERLAAHSDPGYAEKGQLTVTYLTDAHRACAQQISHWMRDCGFDEVHI-DAVGNVVGRYKGSTPQAKRLLTGSH 259 (591)
T ss_pred HHHHHHHHHHhcccCCCCCCCCceeeeeCCHHHHHHHHHHHHHHHHcCCCeeeE-CCCCCEEEEecCCCCCCCeEEEecc
Confidence 4566777777777653 23467899999999999999 8775 5789999999764 3 489999999
Q ss_pred cCCCCCCCCCCCccccccCCccccCCCcHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC------CChHH------
Q 024905 102 MDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG------AGAFH------ 169 (260)
Q Consensus 102 ~DtVp~~~~~~w~~~~~~~g~~~g~G~kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g------~G~~~------ 169 (260)
+||||.+ |+.+|+ +|++++|.+++.|++.+..++++|.|++++|||++ .|++.
T Consensus 260 lDTV~~g------------G~~DG~---~Gv~a~lea~~~l~~~~~~~~~~i~vv~~~~EEg~rF~~~~~GS~~~~G~~~ 324 (591)
T PRK13590 260 YDTVRNG------------GKYDGR---LGIFVPMACVRELHRQGRRLPFGLEVVGFAEEEGQRYKATFLGSGALIGDFD 324 (591)
T ss_pred cccCCCC------------CCcccH---HHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCccccCCccccchHHHhCCCh
Confidence 9999953 555444 78999999999999998888899999999999972 35553
Q ss_pred --HHH---------------cCC----C-------CCCceEEEecccCCCC---CcceEeecccccceeeEEEEEEEccC
Q 024905 170 --MIK---------------EGA----L-------GDSEAIFGMHIDVGIP---TGSIASISGPHLAATSVFNVKVEGRG 218 (260)
Q Consensus 170 --~~~---------------~g~----~-------~~~d~~i~~~~~~~~~---~~~~~~~~g~~~~G~~~~~i~v~G~~ 218 (260)
+++ .|+ + ..+...+.+|.+++.- .+. ...+.++++|..+++|+++|++
T Consensus 325 ~~~~~~~d~~g~~~~~al~~~g~~~~~~~~~~~~~~~~~a~~ElHiEqg~~Le~~~~-~~gvV~~~~G~~~~~v~v~Gka 403 (591)
T PRK13590 325 PAWLDQKDADGITMREAMQHAGLCIDDIPKLRRDPARYLGFVEVHIEQGPVLNELDL-PLGIVTSINGSVRYVGEMIGMA 403 (591)
T ss_pred HHHHhccCCCCCCHHHHHHHcCCChhhccccccCCCCccEEEEEEeCCCHHHHHCCC-ceEEEeeeeccEEEEEEEEeEC
Confidence 222 111 0 1345677788765511 110 1122345789999999999999
Q ss_pred CCcCC-CCC-CcCHHHHHHHHHHHHHHHHhh
Q 024905 219 GHAAM-PHS-TIDPILTASSVILALQQLISR 247 (260)
Q Consensus 219 ~Hs~~-p~~-g~nAi~~~~~~i~~l~~~~~~ 247 (260)
+|+|. |+. +.||+..+++++..++++...
T Consensus 404 aHag~~P~~~r~dAi~aaa~~i~~l~~~~~~ 434 (591)
T PRK13590 404 SHAGTTPMDRRRDAAAAVAELALYVEQRAAQ 434 (591)
T ss_pred CCCCCCCchhcccHHHHHHHHHHHHHHHHhc
Confidence 99994 655 579999999999999887543
No 63
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=99.89 E-value=1.7e-21 Score=177.82 Aligned_cols=179 Identities=13% Similarity=0.176 Sum_probs=136.3
Q ss_pred CCcchHHHHHHHHHHHHhCCCCeEeecCCceEEEEEcCC--CCcEEEEEeccCCCCCCCCCCCccccccCCccccCCCcH
Q 024905 53 LLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSG--SRPVVVLRADMDALPLQELVEWEHKSKIDGKMHACGHDV 130 (260)
Q Consensus 53 ~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nlia~~~~~--~~~~i~l~~H~DtVp~~~~~~w~~~~~~~g~~~g~G~kg 130 (260)
.|..+.++.+|+.++|+++|++++. |..+|+++++++. +.|+|++.+|+||||.+ |+. +-..
T Consensus 28 ~s~~~~~a~~~~~~~~~~~Gl~v~~-D~~gN~~~~~~g~~~~~~~i~~gsHlDtv~~g------------G~~---dg~~ 91 (406)
T TIGR03176 28 YSPEWLAAQQQFKKRMAESGLETRF-DDVGNLYGRLVGTEFPEETILTGSHIDTVVNG------------GNL---DGQF 91 (406)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEE-cCCCcEEEEecCCCCCCCeEEEeccccCCCCC------------Ccc---Cchh
Confidence 3446889999999999999999886 5789999999865 35899999999999964 222 2235
Q ss_pred HHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC------CChHHHHH------------------------cCC-----
Q 024905 131 HTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG------AGAFHMIK------------------------EGA----- 175 (260)
Q Consensus 131 ~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g------~G~~~~~~------------------------~g~----- 175 (260)
|+++.|.+++.|++.+.+++++|.++++++||++ .|++.+.. .|+
T Consensus 92 Gv~~~le~~~~l~~~~~~~~~~i~vi~~~~EEg~rf~~~~~Gs~~~~g~~~~~~~~~~~d~~g~~~~~~~~~~g~~~~~~ 171 (406)
T TIGR03176 92 GALAAWLAVDYLKEKYGAPLRTVEVLSMAEEEGSRFPYVFWGSKNIFGLAKPEDVRTIEDAKGIKFVDAMHACGFDLRKA 171 (406)
T ss_pred hHHHHHHHHHHHHHcCCCCCCCeEEEEeccccCccCCcccccHHHHhCCCCHHHHHhCcCCCCCCHHHHHHHcCCCcccc
Confidence 6999999999999998899999999999999974 35555541 011
Q ss_pred ---CCCCceEEEecccCC--CCCcceEeecccccceeeEEEEEEEccCCCcCCCCC--CcCHHHHHHHHHHHHHHHHhh
Q 024905 176 ---LGDSEAIFGMHIDVG--IPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHS--TIDPILTASSVILALQQLISR 247 (260)
Q Consensus 176 ---~~~~d~~i~~~~~~~--~~~~~~~~~~g~~~~G~~~~~i~v~G~~~Hs~~p~~--g~nAi~~~~~~i~~l~~~~~~ 247 (260)
..++++.+.+|.+.| .+.....+.+..+++|..+++|+++|+++|+|.|.. +.||+..+++++..++++..+
T Consensus 172 ~~~~~~~~~~~elHieqG~~Le~~g~~igiv~~~~G~~~~~v~v~GkaaHag~~p~~~r~dAi~aaa~~i~~l~~~~~~ 250 (406)
T TIGR03176 172 PTVRDDIKAFVELHIEQGCVLESEGQSIGVVNAIVGQRRYTVNLKGEANHAGTTPMSYRRDTVYAFSRICTQSIERAKE 250 (406)
T ss_pred cccccccceEEEEEECCCcchHHCCCeEEEEeecccceEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHh
Confidence 013457777887433 221111222335578999999999999999996444 379999999999999887654
No 64
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=99.80 E-value=1.9e-18 Score=152.52 Aligned_cols=203 Identities=16% Similarity=0.170 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhCCCCeEe----------ec--CCceEEEEEcCC-CCcEEEEEec
Q 024905 37 KDWLVSVRRQIHENPELLF--EEHNTSALIRRELDKLGIPYAY----------PV--AKTGIVAQIGSG-SRPVVVLRAD 101 (260)
Q Consensus 37 ~~~~~~~~~~l~~ips~s~--~e~~~~~~l~~~l~~~G~~~~~----------~~--~~~nlia~~~~~-~~~~i~l~~H 101 (260)
.+++..+..+|++.||+++ .|...+++|...|.++.+=-+. .+ ++.|++|.++|+ +.++|++.||
T Consensus 7 ~e~v~~lt~~LV~~~SvtgT~GE~a~ad~l~~vL~~~pYFqehped~~~~pi~nDpygR~nv~AlVrg~~~k~tvvl~gH 86 (553)
T COG4187 7 SERVRALTLSLVSWPSVTGTPGEGAFADRLLGVLGELPYFQEHPEDLWLQPIHNDPYGRRNVFALVRGGTSKRTVVLHGH 86 (553)
T ss_pred HHHHHHHHHHHeeccccCCCcccccHHHHHHHHHhcCchhhhChHhhcccCCCCCccccceeEEEEecCCCCceEEEeec
Confidence 5778889999999999987 6889999999999988652111 12 689999999875 5689999999
Q ss_pred cCCCCCCCCCCC---cccc----------------------ccCCccccCC---CcHHHHHHHHHHHHHHhccCCCCceE
Q 024905 102 MDALPLQELVEW---EHKS----------------------KIDGKMHACG---HDVHTTMLLGAAKLIHQRKDKLKGTV 153 (260)
Q Consensus 102 ~DtVp~~~~~~w---~~~~----------------------~~~g~~~g~G---~kg~~a~~l~a~~~L~~~~~~~~~~i 153 (260)
+|||...+.... .|++ ..+++++||| ||+|+|+.|++++.+.+. ...+|||
T Consensus 87 ~DtV~iedYg~lKd~Afdp~~ll~~~i~~~e~~~erv~~Dl~SGDwlfGRGa~DMKsGlav~la~L~~fa~~-~~~~GNl 165 (553)
T COG4187 87 FDTVSIEDYGELKDLAFDPLALLDALIESLELREERVLRDLESGDWLFGRGALDMKSGLAVHLACLEEFAAR-TDRQGNL 165 (553)
T ss_pred cceeecccccchhhhccCHHHHHHHHHHhhccCHHHHhhhhhccCcccCCCchhhhhhhHHHHHHHHHHhhC-CCCCCcE
Confidence 999998765433 2332 1378999998 599999999999999876 5789999
Q ss_pred EEEeecCCCCC-CChHHHHHc--CCCC--CCce--EEEecccCCCCCcce--EeecccccceeeEEEEEEEccCCCcCCC
Q 024905 154 RILFQPAEEGG-AGAFHMIKE--GALG--DSEA--IFGMHIDVGIPTGSI--ASISGPHLAATSVFNVKVEGRGGHAAMP 224 (260)
Q Consensus 154 ~~~~~~dEE~g-~G~~~~~~~--g~~~--~~d~--~i~~~~~~~~~~~~~--~~~~g~~~~G~~~~~i~v~G~~~Hs~~p 224 (260)
.|+.++|||.. .|++..+.. ++.+ +.++ +|..++....-.|.- .+..| ..|..---.-+.|+..|.|.|
T Consensus 166 Lf~a~pdEE~~s~G~r~a~~~L~~L~kk~~l~~~~~IN~D~~~~~~dGd~~ryvYtG--tiGKLLp~f~vvG~etHvG~~ 243 (553)
T COG4187 166 LFMAVPDEEVESRGMREARPALPGLKKKFDLEYTAAINLDVTSDQGDGDQGRYVYTG--TIGKLLPFFFVVGCETHVGYP 243 (553)
T ss_pred EEEeccchhhhcccHHHHHHHHHHHHHhhCceEEEEeccccccCCCCCccceEEEec--cchhhcceeEEEeeccccCCc
Confidence 99999999976 788776543 1111 2344 444333111111221 12223 345555567789999999999
Q ss_pred CCCcCHHHHHHHHHHHHH
Q 024905 225 HSTIDPILTASSVILALQ 242 (260)
Q Consensus 225 ~~g~nAi~~~~~~i~~l~ 242 (260)
..|+||-..+++++++|+
T Consensus 244 f~Gvnan~maSei~~~le 261 (553)
T COG4187 244 FEGVNANFMASEITRRLE 261 (553)
T ss_pred ccCCCHHHHHHHHHHHhh
Confidence 999999999999999986
No 65
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=99.66 E-value=1.7e-15 Score=133.45 Aligned_cols=123 Identities=15% Similarity=0.196 Sum_probs=95.7
Q ss_pred HHHhCCCCCcchHHHHHHHHHHHHhCCCCeEee-----------c--------CCceEEEEEcCCCCcEEEEEeccCCCC
Q 024905 46 QIHENPELLFEEHNTSALIRRELDKLGIPYAYP-----------V--------AKTGIVAQIGSGSRPVVVLRADMDALP 106 (260)
Q Consensus 46 ~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~-----------~--------~~~nlia~~~~~~~~~i~l~~H~DtVp 106 (260)
.+-..++-|..|.++++||.++|+++|++++.. . ...|+++.+++...+.|++.||+|||+
T Consensus 43 ~~~gR~~gS~~E~~aA~yL~~~f~~lG~~v~~q~f~~~~~~~~~~g~~~~~~~~g~nVIa~~~G~~~~~Ill~AH~DTV~ 122 (346)
T PRK10199 43 FFPGRMTGSPAEMLSADYLRQQFQQMGYQSDIRTFNSRYIYTARDNRKNWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYA 122 (346)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHHHHCCCceEeeeccccceeecccccccccCCccceEEEEECCCCCCeEEEEEEcCcCC
Confidence 344456667789999999999999999987531 1 136799999876558999999999998
Q ss_pred CCCCCCCccccccCCccccCC---CcHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC-CChHHHHHc
Q 024905 107 LQELVEWEHKSKIDGKMHACG---HDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKE 173 (260)
Q Consensus 107 ~~~~~~w~~~~~~~g~~~g~G---~kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g-~G~~~~~~~ 173 (260)
+....+|++.. ++ ++++| +|+|++++|.+++.|++.+ ++.+|.|+++++||.| .|+++++++
T Consensus 123 p~~~~~~~~~~--~g-~~~~GA~DnasGvA~lLe~ar~l~~~~--~~~~I~fv~~~~EE~Gl~GS~~~~~~ 188 (346)
T PRK10199 123 PQSDADVDANL--GG-LTLQGMDDNAAGLGVMLELAERLKNVP--TEYGIRFVATSGEEEGKLGAENLLKR 188 (346)
T ss_pred CCCCCccccCC--CC-cccCCccccHHHHHHHHHHHHHHhhCC--CCCcEEEEEECCcccCcHHHHHHHHh
Confidence 64434444432 22 45555 4799999999999998653 6779999999999999 899999886
No 66
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=99.59 E-value=3.1e-14 Score=126.74 Aligned_cols=129 Identities=23% Similarity=0.289 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhCCCCeEeecCCceEEEEEcCC-CCcEEEEEeccCCCCC---------
Q 024905 38 DWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSG-SRPVVVLRADMDALPL--------- 107 (260)
Q Consensus 38 ~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nlia~~~~~-~~~~i~l~~H~DtVp~--------- 107 (260)
+.+.+++++|+++||+|+.|.++++++.++|+++|++++. +..+|+++.+++. ++|+|+|.||||+|..
T Consensus 3 ~~~~~lLk~Lv~~~s~SG~E~~V~~~l~~~l~~~g~ev~~-D~~Gnlia~~~g~~~~~~v~l~aHmDevG~~V~~I~~~G 81 (343)
T TIGR03106 3 DYLTETLLALLAIPSPTGFTDAVVRYVAERLEDLGIEYEL-TRRGAIRATLPGREATPARAVVTHLDTLGAMVRELKDNG 81 (343)
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCeEEE-CCCeEEEEEECCCCCCCeEEEEEeeccccceeeEECCCC
Confidence 4578889999999999999999999999999999999886 6899999988663 4589999999999953
Q ss_pred -------CC-----------------C-------C-----------------CCc---------ccc-------------
Q 024905 108 -------QE-----------------L-------V-----------------EWE---------HKS------------- 117 (260)
Q Consensus 108 -------~~-----------------~-------~-----------------~w~---------~~~------------- 117 (260)
|. . . +|. ..+
T Consensus 82 ~l~~~~iGG~~~~~l~g~~v~i~t~~g~~~Gvi~~~~~~~H~~~~~~~~~~~~~~~~~l~iDiG~~s~ee~~~lGV~~Gd 161 (343)
T TIGR03106 82 RLELVPIGHWSARFAEGARVTIFTDSGEFRGTILPLKASGHAFNEEIDSQPTGWDHVEVRVDARASCRADLVRLGISVGD 161 (343)
T ss_pred eEEEEecCCCcccceeCCEEEEEeCCCeEEEEECCCCCCCccCChHHccCCCCCcccEEEEECCcCCHHHHHHcCCCCCC
Confidence 10 0 0 011 000
Q ss_pred ----------ccCCccccCC--CcHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCCCCh
Q 024905 118 ----------KIDGKMHACG--HDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGGAGA 167 (260)
Q Consensus 118 ----------~~~g~~~g~G--~kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g~G~ 167 (260)
..+|++|||+ +|+++++++.+++.|++.+.+++.+|.++|+++||.|.|+
T Consensus 162 ~v~~~~~~~~~~~~~i~gr~~D~K~G~a~~l~~~~~l~~~~~~~~~~v~~~~t~qEEvG~ga 223 (343)
T TIGR03106 162 FVAFDPQPEFLANGFIVSRHLDDKAGVAALLAALKAIVEHKVPLPVDVHPLFTITEEVGSGA 223 (343)
T ss_pred EEEECCccEEecCCEEEEEecccHHhHHHHHHHHHHHHhcCCCCCceEEEEEECCcccCccc
Confidence 0246677765 6899999999999999877678899999999999999664
No 67
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=99.59 E-value=2.6e-15 Score=122.45 Aligned_cols=88 Identities=32% Similarity=0.492 Sum_probs=72.5
Q ss_pred EEEeccCCCCCCCCCCCcccc----ccCCccccCCC---cHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC-C-Ch
Q 024905 97 VLRADMDALPLQELVEWEHKS----KIDGKMHACGH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-A-GA 167 (260)
Q Consensus 97 ~l~~H~DtVp~~~~~~w~~~~----~~~g~~~g~G~---kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g-~-G~ 167 (260)
+|++|||||| + ...|.++| +++|++||||+ |+++++++.+++.|++.+.+++++|.|+|+++||.| . |+
T Consensus 1 ll~~H~Dtv~-~-~~~w~~~pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~g~ 78 (189)
T PF01546_consen 1 LLYAHMDTVP-G-PEGWKHDPFELSIEDGRLYGRGADDMKGGIAAMLAALKALKESGDDLPGNIIFLFTPDEEIGSIGGA 78 (189)
T ss_dssp EEEEES-BCS-T-GGGSSSSTTSEEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTTTTCSSEEEEEEESTCCGTSTTHH
T ss_pred CccccccccC-C-cCcCCCCCcccEEECCEEEcCCcCCCcccHHHHHHHHHHHHhccccccccccccccccccCCCcchh
Confidence 6899999999 4 67887653 57999999996 899999999999999888899999999999999988 4 99
Q ss_pred HHHHHcCC--CCCCceEEEec
Q 024905 168 FHMIKEGA--LGDSEAIFGMH 186 (260)
Q Consensus 168 ~~~~~~g~--~~~~d~~i~~~ 186 (260)
+.+++++. ..++|+++..+
T Consensus 79 ~~l~~~~~~~~~~~~~~~~~e 99 (189)
T PF01546_consen 79 KHLLEEGAFFGLHPDYVIIGE 99 (189)
T ss_dssp HHHHHHCEEEEEEESEEEECE
T ss_pred hhhhhhccccccccccccccc
Confidence 99998742 12366777543
No 68
>PRK09961 exoaminopeptidase; Provisional
Probab=99.49 E-value=1.3e-12 Score=116.55 Aligned_cols=141 Identities=14% Similarity=0.229 Sum_probs=106.6
Q ss_pred HHHHHHHHhCCCCCcchHHHHHHHHHHHHhCCCCeEeecCCceEEEEEcCCCCcEEEEEeccCCCCCC----CCC-----
Q 024905 41 VSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVVLRADMDALPLQ----ELV----- 111 (260)
Q Consensus 41 ~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nlia~~~~~~~~~i~l~~H~DtVp~~----~~~----- 111 (260)
++++++|+++||+|++|.++++++.++|+++|++++. +..+|+++++++.++|+|+|.||||+|+.- +++
T Consensus 3 ~~~L~~L~~~~s~sG~E~~v~~~i~~~l~~~~~~v~~-D~~Gnvi~~~~g~~~~~v~l~aHmDevg~~V~~I~~~G~l~~ 81 (344)
T PRK09961 3 LSLLKALSEADAIASSEQEVRQILLEEADRLQKEVRF-DGLGSVLIRLNESTGPKVMICAHMDEVGFMVRSISREGAIDV 81 (344)
T ss_pred HHHHHHHHhCCCCCCChHHHHHHHHHHHHhhCCEEEE-CCCCCEEEEEcCCCCCEEEEEeccceeceEEEEECCCceEEE
Confidence 3679999999999999999999999999999998876 689999998866545899999999999641 000
Q ss_pred ----CCc-------------------------------cc---------c--------c---------------cCCccc
Q 024905 112 ----EWE-------------------------------HK---------S--------K---------------IDGKMH 124 (260)
Q Consensus 112 ----~w~-------------------------------~~---------~--------~---------------~~g~~~ 124 (260)
.|. +. + + .++++.
T Consensus 82 ~~vGG~~~~~~~~~~v~i~~~~g~~i~Gvi~~~~~~~~~~~l~iDiG~~s~ee~~~~GI~~Gd~v~~~~~~~~~~~~~i~ 161 (344)
T PRK09961 82 LPVGNVRMAARQLQPVRITTREECKIPGLLNGDRQGNDVSAMRVDIGARSYDEVMQAGIRPGDRVTFDTTFQVLPHQRVM 161 (344)
T ss_pred EeCCCccccccCCCEEEEEeCCCCEeeEEEChhhcCCCHHHEEEEcCCCCHHHHHhcCCCCCCEEEEcceeEEecCCEEE
Confidence 110 00 0 0 012222
Q ss_pred cC--CCcHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC-CChHHHHHcCCCCCCceEEEecc
Q 024905 125 AC--GHDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEGALGDSEAIFGMHI 187 (260)
Q Consensus 125 g~--G~kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g-~G~~~~~~~g~~~~~d~~i~~~~ 187 (260)
|+ |.+.++++++.+++.+++. +++.++.++|++.||.| .|++..... + ++|++|+++.
T Consensus 162 gkalDnR~g~~~lle~l~~l~~~--~~~~~v~~~~tvqEEvG~rGa~~aa~~--i-~pd~~I~vDv 222 (344)
T PRK09961 162 GKAFDDRLGCYLLVTLLRELHDA--ELPAEVWLVASSSEEVGLRGGQTATRA--V-SPDVAIVLDT 222 (344)
T ss_pred EeechhhHhHHHHHHHHHHhhhc--CCCceEEEEEEcccccchHHHHHHHhc--c-CCCEEEEEec
Confidence 33 2368899999999988754 36789999999999999 788776543 3 4789998875
No 69
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=99.43 E-value=4.8e-12 Score=112.04 Aligned_cols=144 Identities=19% Similarity=0.280 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhCCCCeEeecCCceEEEEEcCCCC-cEEEEEeccCCCCCC----CC--
Q 024905 38 DWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSR-PVVVLRADMDALPLQ----EL-- 110 (260)
Q Consensus 38 ~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nlia~~~~~~~-~~i~l~~H~DtVp~~----~~-- 110 (260)
+++.+++++|+++|++||.|+++.+|+.++|++++.+++. +..+|+++++++.++ |.|++.||||.|-.- +.
T Consensus 2 ~~~~~~LkeL~~~~gpsG~E~eVr~~~~~el~~~~~ev~~-D~lGnlia~~~g~~g~~~imi~AHmDEiG~mV~~I~~~G 80 (355)
T COG1363 2 EELLELLKELLEAPGPSGYEEEVRDVLKEELEPLGDEVEV-DRLGNLIAKKGGKNGPPKVMIAAHMDEIGFMVKEIEDDG 80 (355)
T ss_pred hHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHhCCceEE-cCCCcEEEEecCCCCCccEEEEeecceeeeeEEEECCCc
Confidence 4578899999999999999999999999999999999876 689999999987444 669999999999421 00
Q ss_pred -------CCCccc------------------------c-----cc-----------------------------------
Q 024905 111 -------VEWEHK------------------------S-----KI----------------------------------- 119 (260)
Q Consensus 111 -------~~w~~~------------------------~-----~~----------------------------------- 119 (260)
..|... | .+
T Consensus 81 ~Lr~~~IGG~~~~~~~gq~v~i~t~~g~~i~GvIg~~p~H~~~~~~~~~~~~~~~el~iDiga~skeea~~lGI~vGd~v 160 (355)
T COG1363 81 FLRFVPIGGWDPQVLEGQRVTIHTDKGKKIRGVIGSKPPHLLKEEAERKKPPEWDELFIDIGASSKEEAEELGIRVGDFV 160 (355)
T ss_pred eEEEEEcCCcChhhccCcEEEEEeCCCcEEeeeEcccCccccCccccccCCCchhhEEEECCcCCHHHHHhcCCCCCCEE
Confidence 012100 0 00
Q ss_pred ----------CCcccc--CCCcHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC-CChHHHHHcCCCCCCceEEEec
Q 024905 120 ----------DGKMHA--CGHDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEGALGDSEAIFGMH 186 (260)
Q Consensus 120 ----------~g~~~g--~G~kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g-~G~~~~~~~g~~~~~d~~i~~~ 186 (260)
++++-+ -|.+.++++++.+++.| + +.+++.++.++|++-||.| .|++....+ + ++|++|.++
T Consensus 161 ~~~~~~~~l~~~~i~skalDdR~gva~lle~lk~l-~-~~~~~~~vy~v~tvqEEVGlrGA~~~a~~--i-~pd~aiavd 235 (355)
T COG1363 161 VFDPRFRELANGRVVSKALDDRAGVAALLELLKEL-K-GIELPADVYFVASVQEEVGLRGAKTSAFR--I-KPDIAIAVD 235 (355)
T ss_pred EEcCceEEecCCcEEeeeccchHhHHHHHHHHHHh-c-cCCCCceEEEEEecchhhccchhhccccc--c-CCCEEEEEe
Confidence 011111 23468999999999999 4 6679999999999999999 788766543 2 468888776
Q ss_pred c
Q 024905 187 I 187 (260)
Q Consensus 187 ~ 187 (260)
.
T Consensus 236 ~ 236 (355)
T COG1363 236 V 236 (355)
T ss_pred c
Confidence 4
No 70
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=99.40 E-value=1.1e-11 Score=110.61 Aligned_cols=141 Identities=17% Similarity=0.192 Sum_probs=105.8
Q ss_pred HHHHHHHhCCCCCcchHHHHHHHHHHHHhCCCCeEeecCCceEEEEEcCC--CCcEEEEEeccCCCCCC----CCC----
Q 024905 42 SVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSG--SRPVVVLRADMDALPLQ----ELV---- 111 (260)
Q Consensus 42 ~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nlia~~~~~--~~~~i~l~~H~DtVp~~----~~~---- 111 (260)
+++++|+++|++|+.|.++++++.++|++++.+++. |..+|+++.++++ .+|+|+|.||||+|+-- +++
T Consensus 2 ~~L~~L~~~~gpSG~E~~v~~~i~~~l~~~~~~v~~-D~~GNvia~~~g~~~~~~~vml~AHmDeVGf~V~~I~~~G~l~ 80 (350)
T TIGR03107 2 NKIKEVTELQGTSGFEHPIRDYLRQDITPLVDQVET-DGLGGIFGIKESQVENAPRVMVAAHMDEVGFMVSQIKPDGTFR 80 (350)
T ss_pred hHHHHHHhCCCCCCCcHHHHHHHHHHHHhhCCEEEE-CCCCCEEEEecCCCCCCCEEEEEecccEeCEEEEEECCCceEE
Confidence 568999999999999999999999999999988775 6889999988663 35899999999999521 000
Q ss_pred -----CCc----------c--------------------cc-c-------------------------------------
Q 024905 112 -----EWE----------H--------------------KS-K------------------------------------- 118 (260)
Q Consensus 112 -----~w~----------~--------------------~~-~------------------------------------- 118 (260)
.|. + +. .
T Consensus 81 ~~~vGG~~~~~l~gq~V~i~t~~g~~i~GViG~~~~Hl~~~~~~~~~~~~~~~l~IDiGa~skee~~~~GI~vGd~v~~~ 160 (350)
T TIGR03107 81 VVELGGWNPLVVSSQRFTLFTRKGKKYPVISGSVPPHLLRGSSGGPQLPAVSDILFDGGFTNKDEAWSFGVRPGDVIVPQ 160 (350)
T ss_pred EEeCCCccccccCCcEEEEEeCCCCEEEEEEeCCcccccChhhcccccCChhhEEEEeCCCCHHHHHhcCCCCCCEEEEC
Confidence 110 0 00 0
Q ss_pred -------cCCccccC--CCcHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC-CChHHHHHcCCCCCCceEEEeccc
Q 024905 119 -------IDGKMHAC--GHDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEGALGDSEAIFGMHID 188 (260)
Q Consensus 119 -------~~g~~~g~--G~kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g-~G~~~~~~~g~~~~~d~~i~~~~~ 188 (260)
.++++.|+ |.+.++++++.+++.|++. +++.++.++|++.||.| .|++..... + ++|.+|+++..
T Consensus 161 ~~~~~~~~~~~i~~kalDdR~g~a~l~e~l~~l~~~--~~~~~l~~~~tvqEEvG~rGA~~aa~~--i-~pD~aI~vDv~ 235 (350)
T TIGR03107 161 TETILTANGKNVISKAWDNRYGVLMILELLESLKDQ--ELPNTLIAGANVQEEVGLRGAHVSTTK--F-NPDIFFAVDCS 235 (350)
T ss_pred CCeEEEcCCCEEEEeccccHHHHHHHHHHHHHhhhc--CCCceEEEEEEChhhcCchhhhhHHhh--C-CCCEEEEEecC
Confidence 00112232 2358999999999999764 46789999999999999 899876543 3 57899998753
No 71
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=99.39 E-value=1.3e-12 Score=117.98 Aligned_cols=198 Identities=18% Similarity=0.205 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhCCCCeE-ee----------cCCceEEEEEcCC-C-CcEEEEEeccC
Q 024905 37 KDWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYA-YP----------VAKTGIVAQIGSG-S-RPVVVLRADMD 103 (260)
Q Consensus 37 ~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~-~~----------~~~~nlia~~~~~-~-~~~i~l~~H~D 103 (260)
.+.+++.+.+++.||+.|++|.+++.++.++++..|+.++ .. .+..-+.+.+++. + -|.+.|.+|+|
T Consensus 4 ~~~l~~~F~~~~kI~~~S~~e~~~~p~~~~~~k~~~~~v~dE~~~i~~~~~a~~~~~~~~~~L~a~~d~V~~i~~~sh~D 83 (414)
T COG2195 4 MERLLDRFLELVKIPTQSKHEKAVAPSTVGQAKLLGLLVEDELGNIGLKKPATAGENYVPAVLQAHLDMVPEIGFISHHD 83 (414)
T ss_pred hHHHHHHHHHHeeCCCCCCCccccccccHHHHHHcCchhhhhhccccccccccCCCCeeeEEeecccccccccccccccc
Confidence 4678899999999999999999999999999999999883 21 1111244555543 2 37889999999
Q ss_pred CCCCCC----CCCC---------------------ccccc-----------cCC-ccccCCCcHHHHHHHHHHHHHHhc-
Q 024905 104 ALPLQE----LVEW---------------------EHKSK-----------IDG-KMHACGHDVHTTMLLGAAKLIHQR- 145 (260)
Q Consensus 104 tVp~~~----~~~w---------------------~~~~~-----------~~g-~~~g~G~kg~~a~~l~a~~~L~~~- 145 (260)
|+|... ...| .+.|. -+| .+-|.|+|+|++.++.++..+++.
T Consensus 84 t~~d~~~~~v~~~~l~~~~Gad~i~~~~~~a~L~~~~~P~~~~~t~~~ei~~dGa~LLgaD~kAGia~i~~al~~~~~~~ 163 (414)
T COG2195 84 TVPDPIGPNVNPQILKATLGADNIGLAIGLAVLSPEHFPLEVLLTGDEEITTDGATLLGADDKAGIAEIMTALSVLREKH 163 (414)
T ss_pred ccccccccccCCceeeeccCcchhhhhhHHhhcCcccCCceeeeecceEEeccCccccCCcchhHHHHHHHHHHHHhhcC
Confidence 996210 0112 01110 022 234667789999999999999865
Q ss_pred cCCCCceEEEEeecCCCCC-CChHHHHHcCCCCCCceEEEecccCCCCCcceEeecccccceeeEEEEEEEccCCCcC-C
Q 024905 146 KDKLKGTVRILFQPAEEGG-AGAFHMIKEGALGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAA-M 223 (260)
Q Consensus 146 ~~~~~~~i~~~~~~dEE~g-~G~~~~~~~g~~~~~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~v~G~~~Hs~-~ 223 (260)
..-++++|++.|+++||.| .|+..+.-..+ .+++.+.++ |.+.|.+... ..+...+++++.|+.+|++ .
T Consensus 164 ~~i~h~~i~~g~s~~Ee~g~rg~~~~~~a~f--~a~~ay~iD---Gg~~g~i~~e----a~~~~~~~~~~~g~~~h~~~a 234 (414)
T COG2195 164 PEIPHGGIRGGFSPDEEIGGRGAANKDVARF--LADFAYTLD---GGPVGEIPRE----AFNAAAVRATIVGPNVHPGSA 234 (414)
T ss_pred ccccccCeEEEecchHHhhhhhhhhccHHhh--hcceeEecC---CCccCeeeee----ccchheeeeeeeccCcCccch
Confidence 2457899999999999988 88888765432 367888765 4456766553 2467889999999999999 5
Q ss_pred CCCCcCHHHHHHHHHHHHHH
Q 024905 224 PHSTIDPILTASSVILALQQ 243 (260)
Q Consensus 224 p~~g~nAi~~~~~~i~~l~~ 243 (260)
+...+||+..+.+++..+..
T Consensus 235 ~~~~i~a~~~a~e~~~~~~~ 254 (414)
T COG2195 235 KGKMINALLLAAEFILELPL 254 (414)
T ss_pred HHHHhhHHHhhhhhhhcCCc
Confidence 77788999988888877643
No 72
>PRK09864 putative peptidase; Provisional
Probab=99.37 E-value=2e-11 Score=108.86 Aligned_cols=138 Identities=14% Similarity=0.181 Sum_probs=103.5
Q ss_pred HHHHHHHHhCCCCCcchHHHHHHHHHHHHhCCCCeEeecCCceEEEEEcCCCCcEEEEEeccCCCCCC----CC------
Q 024905 41 VSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVVLRADMDALPLQ----EL------ 110 (260)
Q Consensus 41 ~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nlia~~~~~~~~~i~l~~H~DtVp~~----~~------ 110 (260)
++++++|+++|++||.|.++++++.++|+.++.+++. |..+|+++.. +.++|+|+|.||||+|+-- ++
T Consensus 3 ~~~L~~L~~~~g~SG~E~~v~~~l~~~l~~~~dev~~-D~~GNli~~~-g~~~~kvml~AHmDevG~mV~~I~~~G~l~~ 80 (356)
T PRK09864 3 IELLQQLCEASAVSGDEQEVRDILINTLEPCVNEITF-DGLGSFVARK-GNKGPKVAVVGHMDEVGFMVTHIDESGFLRF 80 (356)
T ss_pred HHHHHHHHcCCCCCCchHHHHHHHHHHHHHhCCEEEE-CCCCCEEEEe-CCCCcEEEEEecccccCEEEEEECCCCeEEE
Confidence 4679999999999999999999999999999998775 6889999986 4335799999999999521 00
Q ss_pred ---CCCccc---c----c--c-----------------------------------------------------------
Q 024905 111 ---VEWEHK---S----K--I----------------------------------------------------------- 119 (260)
Q Consensus 111 ---~~w~~~---~----~--~----------------------------------------------------------- 119 (260)
..|.-. . + +
T Consensus 81 ~~lGG~~~~~l~~q~V~i~t~~g~~v~GVig~~~~H~~~~~~~~k~~~~~~l~IDiGa~s~ee~~~~GV~vGD~v~~~~~ 160 (356)
T PRK09864 81 TTIGGWWNQSMLNHRVTIRTHKGVKIPGVIGSVAPHALTEKQKQQPLSFDEMFIDIGANSREEVEKRGVEIGDFISPEAN 160 (356)
T ss_pred EeCCCcCccccCCCEEEEEeCCCCEEEEEEeCCccccCChhHcccCCChhHEEEEeCCCCHHHHHhcCCCCCCEEEECCC
Confidence 011100 0 0 0
Q ss_pred -----CCccccC--CCcHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC-CChHHHHHcCCCCCCceEEEecc
Q 024905 120 -----DGKMHAC--GHDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEGALGDSEAIFGMHI 187 (260)
Q Consensus 120 -----~g~~~g~--G~kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g-~G~~~~~~~g~~~~~d~~i~~~~ 187 (260)
++++.|+ |.+.++++++.+++.|++ ++.++.++|++-||.| .|++..... + ++|.+|+++.
T Consensus 161 ~~~l~~~~i~~kalDnR~g~~~lle~l~~l~~----~~~~vy~v~TvQEEvGlrGA~~aa~~--i-~PDiaIavDv 229 (356)
T PRK09864 161 FACWGEDKVVGKALDNRIGCAMMAELLQTVNN----PEITLYGVGSVEEEVGLRGAQTSAEH--I-KPDVVIVLDT 229 (356)
T ss_pred cEEEcCCEEEEEeCccHHHHHHHHHHHHHhhc----CCCeEEEEEEcchhcchHHHHHHHhc--C-CCCEEEEEec
Confidence 0111122 235889999999998864 6789999999999999 898877553 3 4789998875
No 73
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.62 E-value=3.2e-07 Score=88.42 Aligned_cols=135 Identities=20% Similarity=0.309 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHhC-CCCCc---chHHHHHHHHHHHHhCCCCe-------Eee-----------------cCCceEEEEEc
Q 024905 38 DWLVSVRRQIHEN-PELLF---EEHNTSALIRRELDKLGIPY-------AYP-----------------VAKTGIVAQIG 89 (260)
Q Consensus 38 ~~~~~~~~~l~~i-ps~s~---~e~~~~~~l~~~l~~~G~~~-------~~~-----------------~~~~nlia~~~ 89 (260)
++.++.+.++.++ |.+.+ +|..+.+|+.+++.+..=.. +.+ .+..|++.++.
T Consensus 57 ~rA~~~l~~ls~~G~~~~gS~~ne~~a~~~il~e~~~i~~~~~~~~~~~Evd~q~~sg~~~~~~~~~~Y~~i~NIvVki~ 136 (834)
T KOG2194|consen 57 ARALKDLLSLSAAGPHPVGSDNNEMHASSFILKEVNKIRKGSQSDLYDMEVDLQSASGSFILEGMTLVYQNISNIVVKIS 136 (834)
T ss_pred HHHHHHHHHHHhcCCcccCchhhHHHHHHHHHHHHHHHHhhhhcchhhheeceeeccceeeehhhhheeeeeeeEEEecC
Confidence 4556667777776 55543 56788889888876542111 110 13568999986
Q ss_pred CC--C-CcEEEEEeccCCCCCCCCCCCccccccCCccccCCCc-HHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC-
Q 024905 90 SG--S-RPVVVLRADMDALPLQELVEWEHKSKIDGKMHACGHD-VHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG- 164 (260)
Q Consensus 90 ~~--~-~~~i~l~~H~DtVp~~~~~~w~~~~~~~g~~~g~G~k-g~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g- 164 (260)
++ . .-.|++++|+|+||.+ +|.|.+ .++|.+|.+++.+.+....+..+|+|+|...||.+
T Consensus 137 ~k~~~~~~~lLlnaHfDSvpt~---------------~gAtDDg~~va~mLe~lRv~s~~~~~l~~~vVFLfNgaEE~~L 201 (834)
T KOG2194|consen 137 PKNGNDKNALLLNAHFDSVPTG---------------PGATDDGSGVASMLEALRVLSKSDKLLTHSVVFLFNGAEESGL 201 (834)
T ss_pred CCCCCccceeeeeccccccCCC---------------CCCCcchhHHHHHHHHHHHhhcCCCcccccEEEEecCcccchh
Confidence 54 2 2489999999999964 355554 57899999999999888778999999999999998
Q ss_pred CChHHHHHcCCC-CCCceEEEecc
Q 024905 165 AGAFHMIKEGAL-GDSEAIFGMHI 187 (260)
Q Consensus 165 ~G~~~~~~~g~~-~~~d~~i~~~~ 187 (260)
.|+..++.+..+ +.+.++|.++.
T Consensus 202 ~gsH~FItQH~w~~~~ka~INLea 225 (834)
T KOG2194|consen 202 LGSHAFITQHPWSKNIKAVINLEA 225 (834)
T ss_pred hhcccceecChhhhhhheEEeccc
Confidence 899999886543 34677777653
No 74
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []. This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....
Probab=98.52 E-value=1.8e-07 Score=69.57 Aligned_cols=45 Identities=22% Similarity=0.407 Sum_probs=42.0
Q ss_pred ccceeeEEEEEEEccCCCcCCCCCCcCHHHHHHHHHHHHHHHHhh
Q 024905 203 HLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISR 247 (260)
Q Consensus 203 ~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~ 247 (260)
+++|..+++|+++|+++|+|.|+.|+||+..+++++..|+++..+
T Consensus 2 g~~G~~~~~i~~~G~~~H~s~~~~g~nai~~~~~~l~~l~~~~~~ 46 (111)
T PF07687_consen 2 GHRGVIWFRITITGKSGHSSRPEKGVNAIEAAARFLNALEELEFE 46 (111)
T ss_dssp EEEEEEEEEEEEESBSEETTSGGGSBCHHHHHHHHHHHHHHTTCH
T ss_pred cCCCEEEEEEEEEeeccCCCCccCccCHHHHHHHHHHHHHHhhcc
Confidence 368999999999999999999999999999999999999998655
No 75
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=98.29 E-value=1.4e-06 Score=70.53 Aligned_cols=83 Identities=20% Similarity=0.320 Sum_probs=58.4
Q ss_pred EEEEEeccCCCCCCCCCCCccccccCCccccCCC-cHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC-CChHHHHH
Q 024905 95 VVVLRADMDALPLQELVEWEHKSKIDGKMHACGH-DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIK 172 (260)
Q Consensus 95 ~i~l~~H~DtVp~~~~~~w~~~~~~~g~~~g~G~-kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g-~G~~~~~~ 172 (260)
.|++.||+|+++ .... +....|... -.|++++|..++.|++.+.+++++|+|++..+||.| .|++++++
T Consensus 2 ~ivi~aH~Ds~~-~~~~--------~~~~~GA~DnasGva~lLelAr~l~~~~~~~~~~i~fv~~~~EE~gl~GS~~~~~ 72 (179)
T PF04389_consen 2 YIVIGAHYDSVG-GDAD--------GSWSPGANDNASGVAALLELARVLKELKPQPKRTIRFVFFDGEEQGLLGSRAFVE 72 (179)
T ss_dssp EEEEEEE--BES-CCC---------TCSSS-TTTTHHHHHHHHHHHHHHHHSTHSSSEEEEEEEESSGGGTSHHHHHHHH
T ss_pred EEEEEeecCCCC-CcCC--------CcccCCcccchHHHHHHHHHHHHHHHhhcccCccEEEEEecccccCccchHHHHH
Confidence 689999999998 2111 111223333 378999999999999977778899999999999998 89999996
Q ss_pred c--CCCCCCceEEEec
Q 024905 173 E--GALGDSEAIFGMH 186 (260)
Q Consensus 173 ~--g~~~~~d~~i~~~ 186 (260)
+ ....+..++|.++
T Consensus 73 ~~~~~~~~~~~~inlD 88 (179)
T PF04389_consen 73 HDHEELDNIAAVINLD 88 (179)
T ss_dssp HHHCHHHHEEEEEEEC
T ss_pred hhhcccccceeEEecc
Confidence 3 1122455677664
No 76
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=97.92 E-value=4.3e-05 Score=66.90 Aligned_cols=60 Identities=17% Similarity=0.243 Sum_probs=46.2
Q ss_pred cccCCC--cHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC-CChHHHHHcCCCCCCceEEEecc
Q 024905 123 MHACGH--DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMIKEGALGDSEAIFGMHI 187 (260)
Q Consensus 123 ~~g~G~--kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g-~G~~~~~~~g~~~~~d~~i~~~~ 187 (260)
+.|+.. +.++++++.+++.|++.+ ++.+++++|++-||.| .|++....+ + ++|++|+++.
T Consensus 128 i~gkalDdR~g~~~lle~l~~l~~~~--~~~~v~~v~tvqEEvG~rGA~~aa~~--i-~PD~ai~vD~ 190 (292)
T PF05343_consen 128 IVGKALDDRAGCAVLLELLRELKEKE--LDVDVYFVFTVQEEVGLRGAKTAAFR--I-KPDIAIAVDV 190 (292)
T ss_dssp EEETTHHHHHHHHHHHHHHHHHTTSS---SSEEEEEEESSCTTTSHHHHHHHHH--H--CSEEEEEEE
T ss_pred EEEEeCCchhHHHHHHHHHHHHhhcC--CCceEEEEEEeeeeecCcceeecccc--c-CCCEEEEEee
Confidence 445443 578999999999998754 5699999999999999 788877654 3 4788888875
No 77
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.0028 Score=54.20 Aligned_cols=125 Identities=18% Similarity=0.199 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhCCCCeEee----------cCCceEEEEEcCCCCcEEEEEeccCCC
Q 024905 38 DWLVSVRRQIHENPELLF--EEHNTSALIRRELDKLGIPYAYP----------VAKTGIVAQIGSGSRPVVVLRADMDAL 105 (260)
Q Consensus 38 ~~~~~~~~~l~~ips~s~--~e~~~~~~l~~~l~~~G~~~~~~----------~~~~nlia~~~~~~~~~i~l~~H~DtV 105 (260)
.++.+.++.+. +|.+.| +-.++.+||.+.|+.+|+.++.. ....|+++++.....+.+++.+|+|+-
T Consensus 51 ~~~~~~L~p~l-v~Rvpgs~g~~~vr~~i~~~l~~l~w~ve~~~f~~~tp~g~~~f~nii~tl~~~A~r~lVlachydsk 129 (338)
T KOG3946|consen 51 NRLWENLLPIL-VPRVPGSPGSRQVRRFIIQHLRNLGWAVETDAFTDNTPLGTRNFNNLIATLDPNASRYLVLACHYDSK 129 (338)
T ss_pred HHHHHhhhhhh-ccccCCCCccHHHHHHHHHHHHhcCceeeeccccccCcceeeeeeeEEEecCCCcchheeeecccccc
Confidence 34555554443 444433 55789999999999999988752 124699999976655889999999986
Q ss_pred CCCCCCCCccccccCCccccCCCcHHHHHHHHHHHHHHhcc----CCCCceEEEEeecCCCC----C-----CChHHHHH
Q 024905 106 PLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLIHQRK----DKLKGTVRILFQPAEEG----G-----AGAFHMIK 172 (260)
Q Consensus 106 p~~~~~~w~~~~~~~g~~~g~G~kg~~a~~l~a~~~L~~~~----~~~~~~i~~~~~~dEE~----g-----~G~~~~~~ 172 (260)
-... |. .+-+.|...++|+++..+++|.+.- ....-.+.++|--+||. | .|++++.+
T Consensus 130 ~~p~---~~-------~vgatdsAvpcamll~laq~l~~~~~~~~~~s~lsL~LvFFDGEEAf~eW~p~DSlYGsRhLA~ 199 (338)
T KOG3946|consen 130 IFPG---GM-------FVGATDSAVPCAMLLNLAQALDKILCSKVSASQLSLQLVFFDGEEAFEEWGPEDSLYGSRHLAA 199 (338)
T ss_pred cCCC---cc-------eEeeccccccHHHHHHHHHHHHHHHhcccCcCceeEEEEEeccHHHHhhcCCccccchHHHHHH
Confidence 4311 11 1234566678999999998886532 22345799999999993 2 59999877
Q ss_pred c
Q 024905 173 E 173 (260)
Q Consensus 173 ~ 173 (260)
.
T Consensus 200 ~ 200 (338)
T KOG3946|consen 200 K 200 (338)
T ss_pred H
Confidence 5
No 78
>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism]
Probab=97.32 E-value=0.0046 Score=55.84 Aligned_cols=115 Identities=13% Similarity=0.158 Sum_probs=76.4
Q ss_pred HHHHHHHHhCCCCeEee---------cCCceEEEEEc-C----C---CCcEEEEEeccCCCCCCCCCCCccccccCCccc
Q 024905 62 ALIRRELDKLGIPYAYP---------VAKTGIVAQIG-S----G---SRPVVVLRADMDALPLQELVEWEHKSKIDGKMH 124 (260)
Q Consensus 62 ~~l~~~l~~~G~~~~~~---------~~~~nlia~~~-~----~---~~~~i~l~~H~DtVp~~~~~~w~~~~~~~g~~~ 124 (260)
+.+..-+...|+..... ....|+.+++. | + .-|+|++.+|+||..+.. +.--
T Consensus 165 ~~ll~Tasangy~iv~sg~sp~a~~s~ki~nI~G~L~~glra~~dg~~lPtIaivA~ydtfgaap-----------~lsv 233 (555)
T KOG2526|consen 165 QHLLQTASANGYSIVSSGQSPEAPPSYKILNIVGRLSSGLRAEGDGSALPTIAIVAHYDTFGAAP-----------GLSV 233 (555)
T ss_pred HHHHhhhccCcEEEEecCCCcccCCCCccceEEeecccccccccccccCCeEEEEEeccccccCC-----------CCCC
Confidence 34555556667765431 23568998885 2 1 249999999999997532 2112
Q ss_pred cCCCc-HHHHHHHHHHHHHHhcc----CCCCceEEEEeecCCCCC-CChHHHHHc---CCCCCCceEEEecc
Q 024905 125 ACGHD-VHTTMLLGAAKLIHQRK----DKLKGTVRILFQPAEEGG-AGAFHMIKE---GALGDSEAIFGMHI 187 (260)
Q Consensus 125 g~G~k-g~~a~~l~a~~~L~~~~----~~~~~~i~~~~~~dEE~g-~G~~~~~~~---g~~~~~d~~i~~~~ 187 (260)
|.|.+ +|+.++|..++.+.+.- ...+.|+.|+.+.+---- .|++++++- .+-+.+|++||++.
T Consensus 234 gADSNGSGvvaLLelarlfSkly~ypsTrakYnLlF~lt~aG~lNyqGTkkWLe~dd~~lq~nVdfaiCLdt 305 (555)
T KOG2526|consen 234 GADSNGSGVVALLELARLFSKLYDYPSTRAKYNLLFILTAAGKLNYQGTKKWLEFDDADLQKNVDFAICLDT 305 (555)
T ss_pred CCCCCCccHHHHHHHHHHHHHHhcCcccccceeEEEEEccCccccccchhhhhhcchHHHHhcccEEEEhhh
Confidence 44544 46778999998887642 235779999998875533 799888862 12236899999864
No 79
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=97.04 E-value=0.0022 Score=59.23 Aligned_cols=64 Identities=27% Similarity=0.336 Sum_probs=49.9
Q ss_pred cEEEEEeccCCCCCCCCCCCccccccCCccccCCCc-HHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC-CChHHHH
Q 024905 94 PVVVLRADMDALPLQELVEWEHKSKIDGKMHACGHD-VHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG-AGAFHMI 171 (260)
Q Consensus 94 ~~i~l~~H~DtVp~~~~~~w~~~~~~~g~~~g~G~k-g~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g-~G~~~~~ 171 (260)
+.+++.+|+|.+|.+ +|...+ .|++++|.+++.|++.. ++.+|.|++...||.| .|+++++
T Consensus 209 ~~~~~~a~~~s~~~~---------------~GA~DNasGva~llEiAr~l~~~~--p~~~v~f~~~~aEE~Gl~GS~~~~ 271 (435)
T COG2234 209 SLGLLGAHIDSVPTG---------------PGADDNASGVAALLELARVLKGNP--PKRTVRFVAFGAEESGLLGSEAYV 271 (435)
T ss_pred ceeeecccccCCcCC---------------CCcccccHHHHHHHHHHHHHhcCC--CCceEEEEEecchhhcccccHHHH
Confidence 566666777766632 243333 68999999999998865 8889999999999998 8999998
Q ss_pred HcC
Q 024905 172 KEG 174 (260)
Q Consensus 172 ~~g 174 (260)
.+-
T Consensus 272 ~~~ 274 (435)
T COG2234 272 KRL 274 (435)
T ss_pred hcC
Confidence 763
No 80
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=96.95 E-value=0.003 Score=61.22 Aligned_cols=77 Identities=23% Similarity=0.269 Sum_probs=59.4
Q ss_pred CceEEEEEcCC--CCcEEEEEeccCCCCCCCCCCCccccccCCccccCCCcHHHHHHHHHHHHHH---hccCCCCceEEE
Q 024905 81 KTGIVAQIGSG--SRPVVVLRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLIH---QRKDKLKGTVRI 155 (260)
Q Consensus 81 ~~nlia~~~~~--~~~~i~l~~H~DtVp~~~~~~w~~~~~~~g~~~g~G~kg~~a~~l~a~~~L~---~~~~~~~~~i~~ 155 (260)
-.|++++++|. +.+-|++.+|.|..-.+ +-+...|.+.++..++++. +.+.+|+++|+|
T Consensus 338 i~NIig~I~Gs~epD~~ViigahrDSw~~G----------------a~dp~sGta~Ll~i~~~~~~~~k~gwrP~RtI~F 401 (702)
T KOG2195|consen 338 IQNIIGKIEGSEEPDRYVIIGAHRDSWTFG----------------AIDPNSGTALLLEIARALSKLKKRGWRPRRTILF 401 (702)
T ss_pred eeeEEEEEecCcCCCeEEEEeccccccccC----------------CcCCCccHHHHHHHHHHHHHHHHcCCCccceEEE
Confidence 46999999874 57899999999987632 1223455777777666654 568899999999
Q ss_pred EeecCCCCC-CChHHHHHc
Q 024905 156 LFQPAEEGG-AGAFHMIKE 173 (260)
Q Consensus 156 ~~~~dEE~g-~G~~~~~~~ 173 (260)
+...+||.| .|+-.++++
T Consensus 402 ~sWdAeEfGliGStE~~E~ 420 (702)
T KOG2195|consen 402 ASWDAEEFGLLGSTEWAEE 420 (702)
T ss_pred EEccchhccccccHHHHHH
Confidence 999999988 788888774
No 81
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=95.59 E-value=0.059 Score=45.64 Aligned_cols=69 Identities=19% Similarity=0.260 Sum_probs=52.4
Q ss_pred cEEEEEeccCCCCCCCCCCCccccccCCccccCCC-cHHHHHHHHHHHHHHhc---cCCCCceEEEEeecCCCCC-CChH
Q 024905 94 PVVVLRADMDALPLQELVEWEHKSKIDGKMHACGH-DVHTTMLLGAAKLIHQR---KDKLKGTVRILFQPAEEGG-AGAF 168 (260)
Q Consensus 94 ~~i~l~~H~DtVp~~~~~~w~~~~~~~g~~~g~G~-kg~~a~~l~a~~~L~~~---~~~~~~~i~~~~~~dEE~g-~G~~ 168 (260)
|.|++.+.||+.-.- .+.-.|.+. -.|++++|+++++|.+. ...++++|.|.|..+|--| .|++
T Consensus 1 ~iIlv~armDs~s~F-----------~~~s~GA~s~~sglvaLLaaA~aL~~~~~~~~~~~knV~F~~F~GEs~dYiGS~ 69 (234)
T PF05450_consen 1 PIILVVARMDSFSFF-----------HDLSPGADSSVSGLVALLAAAEALSKLLPDSSNLNKNVLFAFFNGESFDYIGSS 69 (234)
T ss_pred CEEEEEecccchhcc-----------cCCCCCcccchHHHHHHHHHHHHHHHhhhccccccCcEEEEEecCccccccchH
Confidence 678999999988631 122234332 37899999999999866 2357899999999999998 7998
Q ss_pred HHHHc
Q 024905 169 HMIKE 173 (260)
Q Consensus 169 ~~~~~ 173 (260)
.|+.+
T Consensus 70 R~vyD 74 (234)
T PF05450_consen 70 RFVYD 74 (234)
T ss_pred HHHHH
Confidence 88753
No 82
>PF00883 Peptidase_M17: Cytosol aminopeptidase family, catalytic domain; InterPro: IPR000819 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF), the type example being leucyl aminopeptidase from Bos taurus (Bovine). Aminopeptidases are exopeptidases involved in the processing and regular turnover of intracellular proteins, although their precise role in cellular metabolism is unclear [, ]. Leucine aminopeptidases cleave leucine residues from the N-terminal of polypeptide chains, but substantial rates are evident for all amino acids []. The enzymes exist as homo-hexamers, comprising 2 trimers stacked on top of one another []. Each monomer binds 2 zinc ions and folds into 2 alpha/beta-type quasi-spherical globular domains, producing a comma-like shape []. The N-terminal 150 residues form a 5-stranded beta-sheet with 4 parallel and 1 anti-parallel strand sandwiched between 4 alpha-helices []. An alpha-helix extends into the C-terminal domain, which comprises a central 8-stranded saddle-shaped beta-sheet sandwiched between groups of helices, forming the monomer hydrophobic core []. A 3-stranded beta-sheet resides on the surface of the monomer, where it interacts with other members of the hexamer []. The 2 zinc ions and the active site are entirely located in the C-terminal catalytic domain [].; GO: 0004177 aminopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 3KZW_L 3KQX_C 3KQZ_L 3KR4_I 3KR5_J 3T8W_C 3H8F_D 3H8G_A 3H8E_B 3IJ3_A ....
Probab=93.15 E-value=1.6 Score=38.48 Aligned_cols=109 Identities=16% Similarity=0.166 Sum_probs=66.1
Q ss_pred HHHHHHHhCCCCCcchHHHHHHHHHHHHhCCCCeEeec-------C-------------Cc-eEEEEEcCCC---CcEEE
Q 024905 42 SVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPV-------A-------------KT-GIVAQIGSGS---RPVVV 97 (260)
Q Consensus 42 ~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~-------~-------------~~-nlia~~~~~~---~~~i~ 97 (260)
.+.|+|++-|.---.-...++++.+.++++|++++..+ + .+ -++.++.+.+ .++|.
T Consensus 2 n~aRdL~n~P~n~~~P~~~a~~~~~~~~~~~v~v~v~~~~~l~~~gmg~llaVg~gS~~~P~lv~l~Y~g~~~~~~~~i~ 81 (311)
T PF00883_consen 2 NLARDLVNTPPNILTPETFAEYAKELAKKYGVKVEVLDEKELEKLGMGGLLAVGRGSRHPPRLVVLEYKGNGGKSKKPIA 81 (311)
T ss_dssp HHHHHHHHS-TTTSSHHHHHHHHHHHHHHCTEEEEEEEHHHHHHTT-HHHHHHHTTSSS--EEEEEEEETSTSTTSEEEE
T ss_pred hHHHhhhCCChhhcCHHHHHHHHHHHHhhcCCEEEEEeHHHHHHcCCccEeeecccCCCCCEEEEEEECCCCCCCCccEE
Confidence 56789999887555667889999999999998887521 1 11 2233333221 24454
Q ss_pred EEeccCCCCCCCCCCCcccc----cc-CCcccc-CCCcHHHHHHHHHHHHHHhccCCCCceEEEEeecCCC
Q 024905 98 LRADMDALPLQELVEWEHKS----KI-DGKMHA-CGHDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEE 162 (260)
Q Consensus 98 l~~H~DtVp~~~~~~w~~~~----~~-~g~~~g-~G~kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE 162 (260)
|.|- .-.|++ .+ .+.|++ +..++|.|+.+++++++.+.+ ++.||..+....|-
T Consensus 82 LVGK----------GiTFDtGG~~lKp~~~M~~Mk~DM~GAAaV~ga~~aia~lk--~~vnV~~~l~~~EN 140 (311)
T PF00883_consen 82 LVGK----------GITFDTGGLSLKPSGGMEGMKYDMGGAAAVLGAMRAIAKLK--LPVNVVAVLPLAEN 140 (311)
T ss_dssp EEEE----------EEEEEE-TTSSSCSTTGGGGGGGGHHHHHHHHHHHHHHHCT---SSEEEEEEEEEEE
T ss_pred EEcc----------eEEEecCCccCCCCcchhhcccCcchHHHHHHHHHHHHHcC--CCceEEEEEEcccc
Confidence 4432 112321 11 122322 223589999999999999865 66888888777766
No 83
>cd00433 Peptidase_M17 Cytosol aminopeptidase family, N-terminal and catalytic domains. Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and play a key role in protein degradation and in the metabolism of biologically active peptides. They do not contain HEXXH motif (which is used as one of the signature patterns to group the peptidase families) in the metal-binding site. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase. The enzyme is a hexamer, with the catalytic domains clustered around the three-fold axis, and the two trimers related to one another by a two-fold rotation. The N-terminal domain is structurally similar to the ADP-ribose binding Macro domain. This family includes proteins from bacteria, archaea, animals and plants.
Probab=93.09 E-value=3.8 Score=38.44 Aligned_cols=122 Identities=16% Similarity=0.095 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhCCCCeEeec-------CCceEEEEEcCC-CCcEEEEEeccCCCCCC
Q 024905 37 KDWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPV-------AKTGIVAQIGSG-SRPVVVLRADMDALPLQ 108 (260)
Q Consensus 37 ~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~-------~~~nlia~~~~~-~~~~i~l~~H~DtVp~~ 108 (260)
..+-+.+.|+|++-|+---.-...++++.+.+++.|++++..+ +.+.+++.=++. ..|+++..-+...-+..
T Consensus 153 ~a~~~~~aRdL~n~P~n~~tP~~~a~~a~~l~~~~g~~v~V~~~~~l~~~gmg~~laVg~GS~~~p~lv~l~Y~g~~~~~ 232 (468)
T cd00433 153 IAEGVNLARDLVNTPANDLTPTYLAEEAKELAKELGVKVEVLDEKELEELGMGALLAVGKGSEEPPRLIVLEYKGKGASK 232 (468)
T ss_pred HHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHHhcCCEEEEEcHHHHHhCCCCceeeecccCCCCCEEEEEEECCCCCCC
Confidence 3566888999999887545567788999999999999987632 234444443444 34666665554321100
Q ss_pred C-----CCCCccccccCCc-c-ccC---CC---cHHHHHHHHHHHHHHhccCCCCceEEEEeecCCC
Q 024905 109 E-----LVEWEHKSKIDGK-M-HAC---GH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEE 162 (260)
Q Consensus 109 ~-----~~~w~~~~~~~g~-~-~g~---G~---kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE 162 (260)
. ...-.|++ +|. | -+. +| ++|.|+.+++++++.+.+ ++.||..+....|-
T Consensus 233 ~~i~LVGKGiTFDs--GG~slKp~~~M~~Mk~DM~GAAaVlga~~aia~l~--~~vnV~~i~~~~EN 295 (468)
T cd00433 233 KPIALVGKGITFDT--GGLSLKPAAGMDGMKYDMGGAAAVLGAMKAIAELK--LPVNVVGVLPLAEN 295 (468)
T ss_pred CcEEEEcCceEecC--CCccccCccChhhccccchhHHHHHHHHHHHHHcC--CCceEEEEEEeeec
Confidence 0 00112321 111 0 022 23 489999999999999875 67888888888776
No 84
>PRK00913 multifunctional aminopeptidase A; Provisional
Probab=92.10 E-value=3.2 Score=39.03 Aligned_cols=121 Identities=12% Similarity=0.061 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhCCCCeEeec-------CCceEEEEEcCC-CCcEEEEEeccCC----C
Q 024905 38 DWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPV-------AKTGIVAQIGSG-SRPVVVLRADMDA----L 105 (260)
Q Consensus 38 ~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~-------~~~nlia~~~~~-~~~~i~l~~H~Dt----V 105 (260)
.+-+.+.|+|++-|+---.-...++++.+.++++|++++..+ +-+.+++.=++. ..|+++..-+.-. +
T Consensus 171 a~~~~~aRdL~n~P~n~~tP~~~a~~a~~~~~~~g~~v~V~~~~~l~~~gmg~~laVg~GS~~~prli~l~Y~g~~~~i~ 250 (483)
T PRK00913 171 AEGVNLARDLVNEPPNILTPAYLAERAKELAKEYGLEVEVLDEKEMEKLGMGALLAVGQGSANPPRLIVLEYKGGKKPIA 250 (483)
T ss_pred HHHHHHHHHhhCCChhhcCHHHHHHHHHHHHHhcCCEEEEEeHHHHHhCCCCcEEEEeccCCCCCeEEEEEECCCCCeEE
Confidence 566789999999887544556788899999999999987632 233444443444 2466665544310 1
Q ss_pred CCCCCCCCcccc----cc-CCcccc-CCCcHHHHHHHHHHHHHHhccCCCCceEEEEeecCCC
Q 024905 106 PLQELVEWEHKS----KI-DGKMHA-CGHDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEE 162 (260)
Q Consensus 106 p~~~~~~w~~~~----~~-~g~~~g-~G~kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE 162 (260)
-+| ..-.|++ .+ ...|++ +...+|.|+.+++++++.+.+ ++.||..+....|-
T Consensus 251 LVG--KGITFDsGG~slKp~~~M~~MK~DM~GAAaVlga~~aia~lk--l~vnV~~v~~l~EN 309 (483)
T PRK00913 251 LVG--KGLTFDSGGISLKPAAGMDEMKYDMGGAAAVLGTMRALAELK--LPVNVVGVVAACEN 309 (483)
T ss_pred EEc--CceEecCCCccCCCCcChhhcccccHhHHHHHHHHHHHHHcC--CCceEEEEEEeecc
Confidence 111 1122332 11 111221 122489999999999998865 67889888888877
No 85
>KOG2597 consensus Predicted aminopeptidase of the M17 family [General function prediction only]
Probab=90.36 E-value=4.3 Score=38.12 Aligned_cols=125 Identities=13% Similarity=0.057 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhCCCCeEeec------CCceEEEEE-cCC-CCcEEEEEeccCCCCCC
Q 024905 37 KDWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPV------AKTGIVAQI-GSG-SRPVVVLRADMDALPLQ 108 (260)
Q Consensus 37 ~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~------~~~nlia~~-~~~-~~~~i~l~~H~DtVp~~ 108 (260)
+.+-+.+.|+|..-|.--..-...++++.+.+...|++++..+ ..-|.+.-. ++. ..|.++...|..+=|..
T Consensus 188 ~~~~~~lar~l~d~PaN~Mtp~~fae~a~~~~~~~~v~v~V~~~~~i~~~~~~~~l~V~k~s~~pP~ll~lsY~g~~~~~ 267 (513)
T KOG2597|consen 188 KAAAQNLARRLGDTPANRMTPTQFAEEAVDVLCPLGVTVEVRDEEWIEEQGMNSFLAVAKASCEPPRLLELSYKGTSGAD 267 (513)
T ss_pred HHHHHHHHHHhccCChhhcCHHHHHHHHHHhhcccCceEEEechHHHhhccccceeeeccccCCCCEEEEEEEcCCCCCc
Confidence 4566777888877765333456788999999999998776531 223333333 343 34777778776665432
Q ss_pred CCC-----CCcccc----cc-CCcccc-CCCcHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCC
Q 024905 109 ELV-----EWEHKS----KI-DGKMHA-CGHDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEG 163 (260)
Q Consensus 109 ~~~-----~w~~~~----~~-~g~~~g-~G~kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~ 163 (260)
..- ...|++ ++ ...|.+ |+.++|.|+.+++++++.+.+ ++-|+.+++.-.|-.
T Consensus 268 ~~i~lvGKGvtfDsGGl~iK~~~~M~~mr~dm~GAA~v~~~~~a~~~l~--~~in~~~v~plcENm 331 (513)
T KOG2597|consen 268 KTILLVGKGVTFDSGGLSIKPKTGMDGMRRDMGGAAVVLGAFRAAAQLS--LPINVHAVLPLCENM 331 (513)
T ss_pred ceEEEEecceEEecCccccccCCChhhhhhhccccHHHHHHHHHHHhcC--CCCceEEEEeeeccC
Confidence 211 112331 11 122322 344688999999999998776 458888888888874
No 86
>PRK05015 aminopeptidase B; Provisional
Probab=88.95 E-value=19 Score=33.23 Aligned_cols=117 Identities=16% Similarity=0.154 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhC---CCCeEee-------cCCceEEEEEcCCC-CcEEEEEeccCCCCC
Q 024905 39 WLVSVRRQIHENPELLFEEHNTSALIRRELDKL---GIPYAYP-------VAKTGIVAQIGSGS-RPVVVLRADMDALPL 107 (260)
Q Consensus 39 ~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~---G~~~~~~-------~~~~nlia~~~~~~-~~~i~l~~H~DtVp~ 107 (260)
+.+.+.|+|++-|+---.-...++...+++++. +++++.. .+.+.+++.=++.. .|.++.. +| -|.
T Consensus 101 ~~~~~aRdLvn~P~n~ltP~~lA~~a~~~~~~~~~~~v~v~Vl~~~~L~~~gmggilaVgrGS~~pP~lv~L-~Y--~~~ 177 (424)
T PRK05015 101 KIIDWVRDTINAPAEELGPEQLAQRAADLICSVAGDAVSYRIIKGEDLREQGYMGIHTVGRGSERPPVLLAL-DY--NPT 177 (424)
T ss_pred HHHHHHHHHhcCCcccCCHHHHHHHHHHHHHhhccCceEEEEeeHHHHHHCCCCceeeeeccCCCCCEEEEE-Ee--cCC
Confidence 457889999998864434455666677777765 5666552 12334444334443 3555533 33 243
Q ss_pred CCCCCCc-----------cccccCCc-cc-cC---CC---cHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCC
Q 024905 108 QELVEWE-----------HKSKIDGK-MH-AC---GH---DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEG 163 (260)
Q Consensus 108 ~~~~~w~-----------~~~~~~g~-~~-g~---G~---kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~ 163 (260)
++. +.| |++ +|. |- +. +| .+|.|+.++++.++.+.+ ++.+|..+....|-.
T Consensus 178 g~~-~~~v~~aLVGKGITFDS--GG~sLKps~~M~~MK~DMgGAAaV~ga~~~a~~~~--l~~nV~~il~~aENm 247 (424)
T PRK05015 178 GDP-DAPVYACLVGKGITFDS--GGYSIKPSAGMDSMKSDMGGAATVTGALALAITRG--LNKRVKLFLCCAENL 247 (424)
T ss_pred CCC-CCCeeEEEecCceEecC--CCccCCCCcCHHHhhcchhHHHHHHHHHHHHHhcC--CCceEEEEEEecccC
Confidence 321 222 221 111 00 11 23 378888999988777654 778999998888873
No 87
>PTZ00412 leucyl aminopeptidase; Provisional
Probab=88.85 E-value=12 Score=35.78 Aligned_cols=119 Identities=16% Similarity=0.051 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhCCCCeE-eec-------CCceEEEEEcCCC-CcEEEEEeccCCCCCC
Q 024905 38 DWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYA-YPV-------AKTGIVAQIGSGS-RPVVVLRADMDALPLQ 108 (260)
Q Consensus 38 ~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~-~~~-------~~~nlia~~~~~~-~~~i~l~~H~DtVp~~ 108 (260)
.+.+.+.|+|++-|+--..-...++++.+.+.+.|++++ ..+ +-+.+++.=++.. .|.++...|. |..
T Consensus 212 a~~vn~ARdLvn~P~N~ltP~~~Ae~a~~~~~~~g~~v~~Vl~~~~l~~~gmg~llaVgkGS~~pPrli~L~Y~---g~~ 288 (569)
T PTZ00412 212 GHCVNEARNLGNLREDEGVPQFYAEWIKKELAPLGIKVRKVLRGEQLEGAGLNLMYNVGKGSRHEPYLVVFEYI---GNP 288 (569)
T ss_pred HHHHHHHHHhccCChhhcCHHHHHHHHHHHHhhcCCEEEEEEcHHHHHHCCCcceeeeeccCCCCCEEEEEEeC---CCC
Confidence 456788999998886444445678888888888899885 421 2344444434442 3655555442 211
Q ss_pred CCCCCc---------ccc----cc-CCcccc-CCCcHHHHHHHHHHHHHHhccCCCCceEEEEeecCCC
Q 024905 109 ELVEWE---------HKS----KI-DGKMHA-CGHDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEE 162 (260)
Q Consensus 109 ~~~~w~---------~~~----~~-~g~~~g-~G~kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE 162 (260)
+ ...+ |++ .+ .+.|.. .+..+|.|+.+++++++.+.+ ++.||..+....|-
T Consensus 289 ~-~~~~iaLVGKGITFDSGGisLKP~~~M~~MK~DMgGAAaVlga~~AiA~Lk--lpvnVv~iiplaEN 354 (569)
T PTZ00412 289 R-SSAATALVGKGVTFDCGGLNIKPYGSMETMHSDMMGAATVMCTLKAIAKLQ--LPVNVVAAVGLAEN 354 (569)
T ss_pred C-CCCcEEEEcCceEEcCCCCCCCCccChhhhhccchhHHHHHHHHHHHHHcC--CCeEEEEEEEhhhc
Confidence 1 1122 331 01 011211 112488999999999998765 66888888887776
No 88
>COG0260 PepB Leucyl aminopeptidase [Amino acid transport and metabolism]
Probab=80.31 E-value=37 Score=32.06 Aligned_cols=120 Identities=18% Similarity=0.176 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhCC-CCeEeec-------CCceEEEEEcCC-CCcEEEEE---eccC-C
Q 024905 38 DWLVSVRRQIHENPELLFEEHNTSALIRRELDKLG-IPYAYPV-------AKTGIVAQIGSG-SRPVVVLR---ADMD-A 104 (260)
Q Consensus 38 ~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G-~~~~~~~-------~~~nlia~~~~~-~~~~i~l~---~H~D-t 104 (260)
-+.+.+.|+|++.|.---.-.+.++. ++.|.+.+ +++++.+ +.+.+++.=++. ..|+++.. ++=+ -
T Consensus 167 ~~~v~~aRdLvN~P~n~l~P~~la~~-a~~la~~~~v~veVl~~~~l~~~gmg~llaVg~GS~~~Prlivl~y~g~~~~~ 245 (485)
T COG0260 167 AEGVNLARDLVNTPANILTPEELAER-AELLAKLGGVKVEVLDEKDLEKLGMGALLAVGKGSARPPRLIVLEYNGKGKAK 245 (485)
T ss_pred HHHHHHHHHHhhCCcccCCHHHHHHH-HHHHhhcCCceEEEecHHHHHHcCCceeeeeccCCCCCCeEEEEEcCCCCCCC
Confidence 45688999999999754444556666 66676655 7776532 233344433333 23555532 1111 1
Q ss_pred CCC-CCCCCCccccccCCc-c-ccCC---Cc---HHHHHHHHHHHHHHhccCCCCceEEEEeecCCC
Q 024905 105 LPL-QELVEWEHKSKIDGK-M-HACG---HD---VHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEE 162 (260)
Q Consensus 105 Vp~-~~~~~w~~~~~~~g~-~-~g~G---~k---g~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE 162 (260)
.|. --...-.|++ +|. | -+.| || ||.|+.++++.++.+.+ ++.||..+....|-
T Consensus 246 ~~iaLVGKGitFDs--GGisiKp~~~M~~MK~DMgGAAaV~g~~~a~a~l~--l~vnv~~vl~~~EN 308 (485)
T COG0260 246 KPIALVGKGITFDS--GGISIKPAAGMDTMKYDMGGAAAVLGAMRALAELK--LPVNVVGVLPAVEN 308 (485)
T ss_pred ceEEEEcCceeecC--CCcccCCccchhhhhcccchHHHHHHHHHHHHHcC--CCceEEEEEeeecc
Confidence 110 0011122331 121 0 1222 33 88999999999998875 77888888887776
No 89
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=77.00 E-value=55 Score=29.73 Aligned_cols=70 Identities=23% Similarity=0.272 Sum_probs=41.0
Q ss_pred eEEEEEcCCCCcEEEEEeccCCCCCCCCCCCccccccCCccccCCCcHHHHHHHHHHHHHHhccCCCCceEEEEeecCCC
Q 024905 83 GIVAQIGSGSRPVVVLRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEE 162 (260)
Q Consensus 83 nlia~~~~~~~~~i~l~~H~DtVp~~~~~~w~~~~~~~g~~~g~G~kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE 162 (260)
|+|+.-+ +.++.+++.+|.|+=..|. +|.-.|++..+.++..|+..+. ..-++.-+.||
T Consensus 180 ~~Ia~~~-~en~vv~i~AH~DHW~~G~----------------tDN~lg~~~AV~~~~~lr~~~~----~~~lv~FtAEE 238 (486)
T COG4882 180 NVIAVDG-GENGVVLIGAHLDHWYTGF----------------TDNILGVAQAVETAGRLRGRGL----AAGLVVFTAEE 238 (486)
T ss_pred EEEEecC-CCCCceEEeechhhhhhcc----------------cchhhhHHHHHHHHHHHhhcCc----ceeEEEEeccc
Confidence 5554433 3347888999998776532 2323457777777777765432 23444444566
Q ss_pred CC-C---------ChHHHHHc
Q 024905 163 GG-A---------GAFHMIKE 173 (260)
Q Consensus 163 ~g-~---------G~~~~~~~ 173 (260)
.| . |++.++++
T Consensus 239 ~g~p~~~sfyWa~GSr~~lk~ 259 (486)
T COG4882 239 HGMPGMASFYWAAGSRGLLKE 259 (486)
T ss_pred cCCCCCcceeecccchHHHhh
Confidence 44 2 67777665
No 90
>PRK02256 putative aminopeptidase 1; Provisional
Probab=62.74 E-value=15 Score=34.42 Aligned_cols=41 Identities=24% Similarity=0.199 Sum_probs=27.1
Q ss_pred CCccccCCC--cHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC
Q 024905 120 DGKMHACGH--DVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG 164 (260)
Q Consensus 120 ~g~~~g~G~--kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g 164 (260)
++.+.+.+- ..++.+++.++..+. .++..+.++++..||.|
T Consensus 251 ~efI~s~rLDNr~~~~~~leal~~~~----~~~~~~~~~~~dqEEVG 293 (462)
T PRK02256 251 RSLIGAYGQDDRVCAYTSLEALLELE----NPEKTAVVLLVDKEEIG 293 (462)
T ss_pred cceeeccccccHHHHHHHHHHHHhcc----cCCCeEEEEEEcccccC
Confidence 345555443 356666666665442 35678999999999988
No 91
>PF06675 DUF1177: Protein of unknown function (DUF1177); InterPro: IPR009561 This family consists of several hypothetical archaeal and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=61.91 E-value=1e+02 Score=26.40 Aligned_cols=87 Identities=20% Similarity=0.223 Sum_probs=56.2
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCccccccCCccccCCCcHHHHHHHHHHHHH--HhccCCCCceEEEEeecCCCC-----
Q 024905 91 GSRPVVVLRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLI--HQRKDKLKGTVRILFQPAEEG----- 163 (260)
Q Consensus 91 ~~~~~i~l~~H~DtVp~~~~~~w~~~~~~~g~~~g~G~kg~~a~~l~a~~~L--~~~~~~~~~~i~~~~~~dEE~----- 163 (260)
++.|++.+.|-+=-+-+... -...-.|.+|.++++-.|++.+ ++.+..+++++.+.--.+--.
T Consensus 29 g~aptlGIiGRLGgigARP~----------~iGlVSDaDGAi~ala~a~KL~~M~~kGd~L~GDVii~ThIcp~Apt~PH 98 (276)
T PF06675_consen 29 GSAPTLGIIGRLGGIGARPE----------RIGLVSDADGAIAALAAALKLLDMQAKGDVLPGDVIITTHICPDAPTRPH 98 (276)
T ss_pred CCCCeeEEEeeccccccccc----------ceeeeecCchHHHHHHHHHHHHHHHHcCCccCCcEEEEEecCCCCCCCCC
Confidence 34589998887766653210 1112345677888888787765 456888999999986555442
Q ss_pred ------C--CChHHHHHcCCCCCCceEEEecc
Q 024905 164 ------G--AGAFHMIKEGALGDSEAIFGMHI 187 (260)
Q Consensus 164 ------g--~G~~~~~~~g~~~~~d~~i~~~~ 187 (260)
+ -+...+.++..-...|+++..+.
T Consensus 99 ~PvpFM~sPv~~~~~n~~EV~p~mdAILSiDT 130 (276)
T PF06675_consen 99 DPVPFMGSPVDMATMNRHEVDPEMDAILSIDT 130 (276)
T ss_pred CCcccccCccCHHHHHHhhcCcccceEEEEec
Confidence 1 25666666655556788888753
No 92
>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins. Gpi16, Gpi8 and Gaa1 form a sub-complex of the GPI transamidase.; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=47.22 E-value=88 Score=29.73 Aligned_cols=72 Identities=17% Similarity=0.220 Sum_probs=49.3
Q ss_pred CceEEEEEcC--CC-CcEEEEEeccCCCCCCCCCCCccccccCCccccCCCcHHHHHHHHHHHHHHhccCCCCceEEEEe
Q 024905 81 KTGIVAQIGS--GS-RPVVVLRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLIHQRKDKLKGTVRILF 157 (260)
Q Consensus 81 ~~nlia~~~~--~~-~~~i~l~~H~DtVp~~~~~~w~~~~~~~g~~~g~G~kg~~a~~l~a~~~L~~~~~~~~~~i~~~~ 157 (260)
+.|++|..+. ++ ...+++..-++... +. -..++++.+++.++++++.. -..++|++++
T Consensus 3 G~nvy~i~rapR~d~tEaivl~~~~~~~~--------------~~----~n~~~v~l~lal~~~~~~~~-~wsKDii~l~ 63 (504)
T PF04114_consen 3 GTNVYGILRAPRGDGTEAIVLVVPWRDSD--------------GE----YNAGGVALALALARYFRRQS-YWSKDIIFLF 63 (504)
T ss_pred ceEEEEEEecCCCCCceeEEEEEecCCCC--------------cc----cchhhHHHHHHHHHHhhhch-hhhccEEEEe
Confidence 5799998853 23 36788876544322 11 11456899999999998764 4689999999
Q ss_pred ecCCCCCCChHHHHHc
Q 024905 158 QPAEEGGAGAFHMIKE 173 (260)
Q Consensus 158 ~~dEE~g~G~~~~~~~ 173 (260)
+.+|. .|.+.++++
T Consensus 64 ~~~~~--~g~~awl~~ 77 (504)
T PF04114_consen 64 TDDEL--AGMQAWLEA 77 (504)
T ss_pred cCCcc--hHHHHHHHH
Confidence 87654 567777764
No 93
>KOG3566 consensus Glycosylphosphatidylinositol anchor attachment protein GAA1 [Posttranslational modification, protein turnover, chaperones]
Probab=40.67 E-value=1.7e+02 Score=28.33 Aligned_cols=90 Identities=12% Similarity=0.202 Sum_probs=55.6
Q ss_pred HHHHHHHHhCCCCeEeec---------CCceEEEEEcC--CC-CcEEEEEeccCCCCCCCCCCCccccccCCccccCCCc
Q 024905 62 ALIRRELDKLGIPYAYPV---------AKTGIVAQIGS--GS-RPVVVLRADMDALPLQELVEWEHKSKIDGKMHACGHD 129 (260)
Q Consensus 62 ~~l~~~l~~~G~~~~~~~---------~~~nlia~~~~--~~-~~~i~l~~H~DtVp~~~~~~w~~~~~~~g~~~g~G~k 129 (260)
.+....+++.|.+++... .+.|+++.++. ++ ...++|. ||-+.. -+. ..
T Consensus 92 ~~~~~~~q~FGl~t~~~n~~~~P~e~y~G~NvyGilRAPRgdgtEsivl~-----vP~~~~-------------~~~-~~ 152 (617)
T KOG3566|consen 92 AWAEVSMQEFGLETHTQNYSNGPFEEYSGENVYGILRAPRGDGTESIVLV-----VPYGRS-------------SGS-NS 152 (617)
T ss_pred hHHHHHHHHhCccccccCccCCchhhcCCceEEEEEecCCCCCcceEEEE-----EecccC-------------CCc-ch
Confidence 456777788898775421 25799999953 23 3567765 663210 011 13
Q ss_pred HHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCCCChHHHHHc
Q 024905 130 VHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGGAGAFHMIKE 173 (260)
Q Consensus 130 g~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g~G~~~~~~~ 173 (260)
++++.+++.++++++- .-..++|+++++-++- .|.++++++
T Consensus 153 ~~v~l~lsla~~f~r~-~yWsKDII~v~~d~~~--~g~~AwLea 193 (617)
T KOG3566|consen 153 ASVALLLSLADYFSRW-VYWSKDIIFVFTDGPA--LGLDAWLEA 193 (617)
T ss_pred hHHHHHHHHHHHhcCC-eeecccEEEEEeCCcc--ccHHHHHHH
Confidence 5677777777777653 4578899999997743 455555543
No 94
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=34.86 E-value=26 Score=27.90 Aligned_cols=33 Identities=12% Similarity=0.007 Sum_probs=26.8
Q ss_pred HHhCCCCCcchHHHHHHHHHHHHhCCCCeEeec
Q 024905 47 IHENPELLFEEHNTSALIRRELDKLGIPYAYPV 79 (260)
Q Consensus 47 l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~ 79 (260)
|+-.-+-.|+.++++++|+..|++.|.++...+
T Consensus 4 LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~d 36 (175)
T COG4635 4 LILYSTRDGQTRKIAEYIASHLRESGIQVDIQD 36 (175)
T ss_pred EEEEecCCCcHHHHHHHHHHHhhhcCCeeeeee
Confidence 444556668899999999999999999987643
No 95
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=31.92 E-value=58 Score=30.12 Aligned_cols=64 Identities=17% Similarity=0.148 Sum_probs=36.3
Q ss_pred cEEEEEeccCCCCC-CCCCCCcccc------ccCCccc-cCCCcH-HHHHHHHHHHHHHhccCCCCceEEEEeecCCCCC
Q 024905 94 PVVVLRADMDALPL-QELVEWEHKS------KIDGKMH-ACGHDV-HTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGG 164 (260)
Q Consensus 94 ~~i~l~~H~DtVp~-~~~~~w~~~~------~~~g~~~-g~G~kg-~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g 164 (260)
..+.|-||+|.||. +......+.+ +++.++- ..|.+. ++++.++. |. +...++...++++||.+
T Consensus 62 ~~~~L~a~~d~V~~i~~~sh~Dt~~d~~~~~v~~~~l~~~~Gad~i~~~~~~a~---L~----~~~~P~~~~~t~~~ei~ 134 (414)
T COG2195 62 VPAVLQAHLDMVPEIGFISHHDTVPDPIGPNVNPQILKATLGADNIGLAIGLAV---LS----PEHFPLEVLLTGDEEIT 134 (414)
T ss_pred eeEEeeccccccccccccccccccccccccccCCceeeeccCcchhhhhhHHhh---cC----cccCCceeeeecceEEe
Confidence 56789999999994 3333333331 3344544 345432 22222222 21 14667889999999965
No 96
>PF01221 Dynein_light: Dynein light chain type 1 ; InterPro: IPR001372 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits (see IPR004273 from INTERPRO), intermediate size subunits and small subunits. Among the small subunits, there is a family of highly conserved proteins which make up this family [, ]. Both type 1 (DLC1) and 2 (DLC2) dynein light chains have a similar two-layer alpha-beta core structure consisting of beta-alpha(2)-beta-X-beta(2) [, ].; GO: 0007017 microtubule-based process, 0005875 microtubule associated complex; PDB: 1F95_A 1F96_A 1F3C_A 3P8M_B 2XQQ_C 1RE6_A 1CMI_A 1PWK_A 1PWJ_A 4DS1_C ....
Probab=31.51 E-value=1.1e+02 Score=21.39 Aligned_cols=18 Identities=39% Similarity=0.665 Sum_probs=14.7
Q ss_pred chHHHHHHHHHHHHhC-CC
Q 024905 56 EEHNTSALIRRELDKL-GI 73 (260)
Q Consensus 56 ~e~~~~~~l~~~l~~~-G~ 73 (260)
++.+++++|++.|++. |=
T Consensus 34 ~~~eiA~~iK~~lD~~yG~ 52 (89)
T PF01221_consen 34 DEKEIAEFIKQELDKKYGP 52 (89)
T ss_dssp SHHHHHHHHHHHHHHHHSS
T ss_pred cHHHHHHHHHHHHhcccCC
Confidence 6788999999999754 53
No 97
>PRK02813 putative aminopeptidase 2; Provisional
Probab=30.77 E-value=62 Score=30.03 Aligned_cols=20 Identities=35% Similarity=0.197 Sum_probs=16.6
Q ss_pred CceEEEEeecCCCCC-C---ChHH
Q 024905 150 KGTVRILFQPAEEGG-A---GAFH 169 (260)
Q Consensus 150 ~~~i~~~~~~dEE~g-~---G~~~ 169 (260)
+..+.++++..||.| . |++.
T Consensus 252 ~~~~~~~~~d~EEVGs~~~~GA~s 275 (428)
T PRK02813 252 DATNVLAAFDHEEVGSATKQGADS 275 (428)
T ss_pred CCeEEEEEEecCccCCCCCcccCc
Confidence 678999999999988 4 7764
No 98
>PRK04330 hypothetical protein; Provisional
Probab=30.03 E-value=1.7e+02 Score=20.71 Aligned_cols=39 Identities=5% Similarity=-0.045 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhCCCC
Q 024905 36 DKDWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIP 74 (260)
Q Consensus 36 ~~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~ 74 (260)
...+.+.+|.++++-.|++.+-+++++-..+.|...+.+
T Consensus 10 ~ik~~~~~L~~I~~D~sVPRNIRraa~ea~~~L~~e~~~ 48 (88)
T PRK04330 10 KIKQAIQMLEEIINDTSVPRNIRRAATEAKEILLNEEES 48 (88)
T ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhCcCcc
Confidence 346678889999999999999999999999999876654
No 99
>PF14133 DUF4300: Domain of unknown function (DUF4300)
Probab=29.59 E-value=2.9e+02 Score=23.68 Aligned_cols=62 Identities=10% Similarity=0.070 Sum_probs=42.1
Q ss_pred HHHHHhCCCCC-cchHHHHHHHHHHHHhCCCCeEeecCCceEEEEEcCCCCcEEEEEeccCCCCC
Q 024905 44 RRQIHENPELL-FEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVVLRADMDALPL 107 (260)
Q Consensus 44 ~~~l~~ips~s-~~e~~~~~~l~~~l~~~G~~~~~~~~~~nlia~~~~~~~~~i~l~~H~DtVp~ 107 (260)
..-..+||+-. .+...-++-+.+.++++|++. .+.+-.+|..+-..+....+|.||.=+.-+
T Consensus 132 ~~lFs~i~t~~t~D~~~h~~~i~k~wk~rgi~F--~~~k~slISV~~h~~d~~~lFvGH~GVLv~ 194 (250)
T PF14133_consen 132 TTLFSRIPTENTKDIKVHAEKIQKYWKERGIKF--NNDKASLISVFLHDPDDNSLFVGHTGVLVP 194 (250)
T ss_pred HHHhCcCCccccCCHHHHHHHHHHHHHHcCcee--CCCceEEEEEEEEcCCCCeEEeeeEEEEEE
Confidence 33334577654 345567788999999999988 345566666653335578999999877643
No 100
>COG3149 PulM Type II secretory pathway, component PulM [Intracellular trafficking and secretion]
Probab=28.47 E-value=3.2e+02 Score=22.05 Aligned_cols=30 Identities=10% Similarity=0.066 Sum_probs=22.0
Q ss_pred CCCCcchHHHHHHHHHHHHhCCCCeEeecC
Q 024905 51 PELLFEEHNTSALIRRELDKLGIPYAYPVA 80 (260)
Q Consensus 51 ps~s~~e~~~~~~l~~~l~~~G~~~~~~~~ 80 (260)
|++...-....+.|..-++..|++.++.+.
T Consensus 95 ~~~t~s~~~l~~~It~S~~~~gl~~~Rl~~ 124 (181)
T COG3149 95 PQATPSPAALQGVITASARQHGLSVERLDN 124 (181)
T ss_pred CCCCCCcHHHHHHHHHHHHhcCceEEEecC
Confidence 334444457788999999999999887543
No 101
>PRK02813 putative aminopeptidase 2; Provisional
Probab=26.13 E-value=2.5e+02 Score=26.12 Aligned_cols=51 Identities=12% Similarity=0.133 Sum_probs=33.7
Q ss_pred chHHHHHHHHHHHHhCCCCeE-----ee----------cCCceEEEEEcCC-C---CcEEEEEeccCCCC
Q 024905 56 EEHNTSALIRRELDKLGIPYA-----YP----------VAKTGIVAQIGSG-S---RPVVVLRADMDALP 106 (260)
Q Consensus 56 ~e~~~~~~l~~~l~~~G~~~~-----~~----------~~~~nlia~~~~~-~---~~~i~l~~H~DtVp 106 (260)
-+..+.+++.++|++.||.-- +. .....++|..-|+ + ..--++.+|.|.-.
T Consensus 20 t~~hav~~~~~~L~~~Gf~~l~e~~~w~l~~g~kyy~~r~~~sliAf~vg~~~~~~~g~~iv~aH~DsP~ 89 (428)
T PRK02813 20 SPFHAVANVAQRLEAAGFTELDETDAWKLEPGGRYYVVRNGSSLIAFRVGEGAPAETGFRIVGAHTDSPG 89 (428)
T ss_pred CHHHHHHHHHHHHHHcCCeeccccccCccCCCCEEEEEcCCcEEEEEEeCCCCccCCCeEEEEEeccCCC
Confidence 457789999999999999641 10 1234666665332 2 13568899999764
No 102
>PRK02256 putative aminopeptidase 1; Provisional
Probab=25.17 E-value=4.4e+02 Score=24.78 Aligned_cols=50 Identities=10% Similarity=0.058 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHhCCCCe-Ee------------ecCCceEEEEEcCC-C-C-cEEEEEeccCCCC
Q 024905 57 EHNTSALIRRELDKLGIPY-AY------------PVAKTGIVAQIGSG-S-R-PVVVLRADMDALP 106 (260)
Q Consensus 57 e~~~~~~l~~~l~~~G~~~-~~------------~~~~~nlia~~~~~-~-~-~~i~l~~H~DtVp 106 (260)
+..+.+++.++|++.||.- .. ......++|..-|+ + + .--+..+|.|.=.
T Consensus 41 p~Hav~~~~~~L~~~GF~el~e~~~l~~g~kyy~~r~~ssliAf~ig~~~~~~g~~iv~aHtDsP~ 106 (462)
T PRK02256 41 EREAVKEIIELAEEKGFINLEEIIGLKPGDKVYAVNRGKSVALAVIGKEPLEEGLNIIGAHIDSPR 106 (462)
T ss_pred HHHHHHHHHHHHHHcCCeecccccccCCCCEEEEEcCCCEEEEEEeCCCCCCCceEEEEEecCCCC
Confidence 4678899999999999963 11 01233566655333 2 2 2457899999753
No 103
>KOG3430 consensus Dynein light chain type 1 [Cytoskeleton]
Probab=25.16 E-value=1.9e+02 Score=20.62 Aligned_cols=38 Identities=26% Similarity=0.425 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH-hCCCCeE
Q 024905 37 KDWLVSVRRQIHENPELLFEEHNTSALIRRELD-KLGIPYA 76 (260)
Q Consensus 37 ~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~-~~G~~~~ 76 (260)
+.+.+++.++-++--+. .++.++.+|.+.|. ++|-..+
T Consensus 18 q~~a~~~a~~al~~f~~--~~k~iA~~iKkefDkkyG~~Wh 56 (90)
T KOG3430|consen 18 QQEAIELARQALEKFNV--IEKDIAAFIKKEFDKKYGPTWH 56 (90)
T ss_pred HHHHHHHHHHHHHHcCC--ChHHHHHHHHHHHhhhcCCccE
Confidence 34445555554443332 77899999999996 4564443
No 104
>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis. The ste gene cluster (for Streptomyces eps) is involved in exopolysaccharide EPS 139A biosynthesis in Streptomyces sp. 139 []. Members of this group exhibit distant sequence similarity to aminopeptidases (IPR007484 from INTERPRO, MEROPS peptidase family M28).; PDB: 3K9T_A.
Probab=24.99 E-value=2.6e+02 Score=25.56 Aligned_cols=63 Identities=21% Similarity=0.209 Sum_probs=37.6
Q ss_pred cCCCCcEEEEEeccCCCCCCCCCCCccccccCCccccCCCcHHHHHHHHHHHHHHhccCCCCceEEEEeecCCCCCCChH
Q 024905 89 GSGSRPVVVLRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGGAGAF 168 (260)
Q Consensus 89 ~~~~~~~i~l~~H~DtVp~~~~~~w~~~~~~~g~~~g~G~kg~~a~~l~a~~~L~~~~~~~~~~i~~~~~~dEE~g~G~~ 168 (260)
+|...+.|+|.+|+.+=.. +.+.=+|.+.+...++.|++.. .+.+.+|+|.|+ --|+.
T Consensus 125 pG~s~~EillsthiCHPsm-----------------ANdnLSG~~v~~~La~~L~~~~--~rytYRflf~Pe---TIGsI 182 (386)
T PF09940_consen 125 PGESDEEILLSTHICHPSM-----------------ANDNLSGPAVLTFLAKWLKQLP--NRYTYRFLFVPE---TIGSI 182 (386)
T ss_dssp --SSS-EEEEEEE----S------------------TTTTHHHHHHHHHHHHHHTTS----SSEEEEEEE-T---THHHH
T ss_pred cCCCCCeEEEEEeccCccc-----------------ccccccHHHHHHHHHHHHhcCC--cCceEEEEEccc---cHHHH
Confidence 5666689999999875321 2233367888888889898754 448999999986 23666
Q ss_pred HHHHc
Q 024905 169 HMIKE 173 (260)
Q Consensus 169 ~~~~~ 173 (260)
.++.+
T Consensus 183 ~yLsk 187 (386)
T PF09940_consen 183 TYLSK 187 (386)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 105
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=23.71 E-value=2.2e+02 Score=26.55 Aligned_cols=34 Identities=15% Similarity=0.144 Sum_probs=27.9
Q ss_pred ccchHHHHHHHHHHHhhHHHHHHHHHHHHhCCCC
Q 024905 20 AVDEILTNQVMISAQQDKDWLVSVRRQIHENPEL 53 (260)
Q Consensus 20 ~~~~~~~~~i~~~i~~~~~~~~~~~~~l~~ips~ 53 (260)
++++...+.+.+.++.+++++-++...|..-|+.
T Consensus 21 ~a~a~~i~~L~~ql~aLq~~v~eL~~~laa~~~a 54 (514)
T PF11336_consen 21 AATADQIKALQAQLQALQDQVNELRAKLAAKPAA 54 (514)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4466667889999999999999999999887764
No 106
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=22.91 E-value=3.3e+02 Score=25.65 Aligned_cols=50 Identities=18% Similarity=0.206 Sum_probs=32.2
Q ss_pred chHHHHHHHHHHHHhCCCCeE-----ee----------cCCceEEEEE-cCCC----CcEEEEEeccCCC
Q 024905 56 EEHNTSALIRRELDKLGIPYA-----YP----------VAKTGIVAQI-GSGS----RPVVVLRADMDAL 105 (260)
Q Consensus 56 ~e~~~~~~l~~~l~~~G~~~~-----~~----------~~~~nlia~~-~~~~----~~~i~l~~H~DtV 105 (260)
-+..+.+++.++|++.||.-- +. .....++|.. ++.. ..--+..+|.|.=
T Consensus 21 t~~hav~~~~~~L~~~GF~~l~e~~~w~l~~g~kyyv~r~~ssl~Af~vg~~~~~~~~g~~ivgaHtDsP 90 (465)
T PTZ00371 21 SPFHAVQELKERLKKSGFKQLNEGENWKLEKGGKYYLTRNNSTIVAFTVGKKFDAPNGGFKIVGAHTDSP 90 (465)
T ss_pred CHHHHHHHHHHHHHHCcCEEccccccCccCCCCEEEEEcCCcEEEEEEeCCCCccCCCCeEEEEEeccCC
Confidence 457789999999999999641 10 1233566655 2221 1356789999964
No 107
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=22.57 E-value=1.1e+02 Score=22.78 Aligned_cols=27 Identities=11% Similarity=0.166 Sum_probs=23.6
Q ss_pred CCCCcchHHHHHHHHHHHHhCCCCeEe
Q 024905 51 PELLFEEHNTSALIRRELDKLGIPYAY 77 (260)
Q Consensus 51 ps~s~~e~~~~~~l~~~l~~~G~~~~~ 77 (260)
-|.+|+-+++++.+.+.+++.|++++.
T Consensus 6 ~S~tGnT~~~A~~i~~~~~~~g~~v~~ 32 (140)
T TIGR01753 6 ASMTGNTEEMANIIAEGLKEAGAEVDL 32 (140)
T ss_pred ECCCcHHHHHHHHHHHHHHhcCCeEEE
Confidence 467899999999999999999988764
No 108
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.12 E-value=3e+02 Score=19.61 Aligned_cols=41 Identities=7% Similarity=0.099 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhCCCCe
Q 024905 35 QDKDWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPY 75 (260)
Q Consensus 35 ~~~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~ 75 (260)
+...+...++.++++--+++.+-+++++-..+.|...|-+.
T Consensus 13 e~i~q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~e~e~p 53 (93)
T COG1698 13 EKINQVMQLLDEIIQDTTVPRNIRRAAEEAKEALNNEGESP 53 (93)
T ss_pred HHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhCCCCCc
Confidence 34466778888888888888999999999999998877654
No 109
>PF12685 SpoIIIAH: SpoIIIAH-like protein; InterPro: IPR024232 Stage III sporulation protein AH (SpoIIIAH) is a protein that is involved in forespore engulfment. It forms a channel with SpoIIIAH that is open on the forespore end and closed (or gated) on the mother cell end. This allows sigma-E-directed gene expression in the mother-cell compartment of the sporangium to trigger the activation of sigma-G forespore-specific gene expression by a pathway of intercellular signaling. This family of proteins is found in bacteria, archaea and eukaryotes and so must have a wider function than in sporulation. Proteins in this family are typically between 174 and 223 amino acids in length.; PDB: 3UZ0_A 3TUF_A.
Probab=21.99 E-value=3.4e+02 Score=22.02 Aligned_cols=40 Identities=20% Similarity=0.193 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHhCCCCCcchHH--------------HHHHHHHHHHhCCCC
Q 024905 35 QDKDWLVSVRRQIHENPELLFEEHN--------------TSALIRRELDKLGIP 74 (260)
Q Consensus 35 ~~~~~~~~~~~~l~~ips~s~~e~~--------------~~~~l~~~l~~~G~~ 74 (260)
+.+++.++.|+.++..+..|.+++. .-..|+..|+..||+
T Consensus 97 ~~r~~~~e~L~~ii~~~~~s~~~k~~A~~~~~~l~~~~~kE~~iE~llkakGf~ 150 (196)
T PF12685_consen 97 QSRSKQIETLKEIINNENASEEEKKEAQDKLLELTEKMEKEMEIENLLKAKGFE 150 (196)
T ss_dssp HHHHHHHHHHHHHHT-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4456789999999999988765432 223455666767774
No 110
>PF03685 UPF0147: Uncharacterised protein family (UPF0147); InterPro: IPR005354 The proteins in this entry are functionally uncharacterised.; PDB: 2QZG_C 2QSB_A.
Probab=20.63 E-value=2.1e+02 Score=20.21 Aligned_cols=40 Identities=5% Similarity=0.015 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhCCCC
Q 024905 35 QDKDWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIP 74 (260)
Q Consensus 35 ~~~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~ 74 (260)
+...+.+..+.++++-++++.+-+++++-..+.|..-+.+
T Consensus 6 ~~i~~~~~~L~~I~~D~sVPRNIRr~a~ea~~~L~~e~~~ 45 (85)
T PF03685_consen 6 EKIKQAIQMLERIINDTSVPRNIRRAAEEAKEILNNEEES 45 (85)
T ss_dssp HHHHHHHHHHHHHHT-TTS-HHHHHHHHHHHHHCT-TTS-
T ss_pred HHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhCCCcc
Confidence 3446678889999999999999999988888888766653
Done!