Your job contains 1 sequence.
>024906
MAAKPSTTTTAKATYSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSA
SGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSS
MLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVS
VSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDAS
AKLGKIMRSCLKEAASDEQE
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 024906
(260 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2124024 - symbol:RRP41L "AT4G27490" species:37... 1000 7.9e-101 1
ZFIN|ZDB-GENE-050522-362 - symbol:exosc6 "exosome compone... 369 5.8e-34 1
UNIPROTKB|Q28F19 - symbol:exosc6 "Exosome complex compone... 339 8.8e-31 1
RGD|1309832 - symbol:Exosc6 "exosome component 6" species... 297 2.5e-26 1
MGI|MGI:1919794 - symbol:Exosc6 "exosome component 6" spe... 296 3.2e-26 1
UNIPROTKB|Q5RKV6 - symbol:EXOSC6 "Exosome complex compone... 282 9.7e-25 1
FB|FBgn0032487 - symbol:Ski6 "Ski6" species:7227 "Drosoph... 264 7.8e-23 1
UNIPROTKB|F1S435 - symbol:EXOSC6 "Uncharacterized protein... 262 1.3e-22 1
TAIR|locus:2076710 - symbol:RRP41 "AT3G61620" species:370... 262 1.3e-22 1
ZFIN|ZDB-GENE-040426-1702 - symbol:exosc4 "exosome compon... 252 1.5e-21 1
POMBASE|SPBC211.08c - symbol:SPBC211.08c "exosomal 3'-5' ... 251 1.9e-21 1
WB|WBGene00007201 - symbol:exos-4.1 species:6239 "Caenorh... 241 2.1e-20 1
UNIPROTKB|Q17533 - symbol:exos-4.1 "Putative exosome comp... 241 2.1e-20 1
UNIPROTKB|E2RIM3 - symbol:EXOSC4 "Uncharacterized protein... 238 4.4e-20 1
UNIPROTKB|F1RSL0 - symbol:EXOSC4 "Uncharacterized protein... 236 7.2e-20 1
UNIPROTKB|Q9NPD3 - symbol:EXOSC4 "Exosome complex compone... 235 9.2e-20 1
UNIPROTKB|Q7YRA3 - symbol:EXOSC4 "Exosome complex compone... 234 1.2e-19 1
RGD|1310986 - symbol:Exosc4 "exosome component 4" species... 232 1.9e-19 1
FB|FBgn0036916 - symbol:Mtr3 "Mtr3" species:7227 "Drosoph... 228 5.1e-19 1
MGI|MGI:1923576 - symbol:Exosc4 "exosome component 4" spe... 225 1.1e-18 1
CGD|CAL0002905 - symbol:orf19.4582 species:5476 "Candida ... 204 1.8e-16 1
SGD|S000003427 - symbol:SKI6 "Exosome non-catalytic core ... 194 2.0e-15 1
GENEDB_PFALCIPARUM|PFB0415c - symbol:PFB0415c "hypothetic... 186 1.4e-14 1
UNIPROTKB|O96177 - symbol:PFB0415c "3' exoribonuclease, p... 186 1.4e-14 1
POMBASE|SPAC3G9.10c - symbol:rrp41 "exosomal 3'-to-5' pho... 184 2.3e-14 1
TAIR|locus:2075351 - symbol:AT3G46210 "AT3G46210" species... 180 6.2e-14 1
GENEDB_PFALCIPARUM|PF14_0256 - symbol:PF14_0256 "exosome ... 172 1.6e-12 1
UNIPROTKB|Q8ILI7 - symbol:PF14_0256 "Exosome complex exon... 172 1.6e-12 1
UNIPROTKB|Q84T68 - symbol:RRP46 "Exosome complex exonucle... 146 6.6e-10 2
ASPGD|ASPL0000041827 - symbol:AN2153 species:162425 "Emer... 89 8.3e-10 3
CGD|CAL0003194 - symbol:orf19.168 species:5476 "Candida a... 113 9.6e-10 2
WB|WBGene00000798 - symbol:crn-5 species:6239 "Caenorhabd... 147 3.6e-09 1
ASPGD|ASPL0000013004 - symbol:AN3812 species:162425 "Emer... 151 5.2e-09 1
UNIPROTKB|G4MSP2 - symbol:MGG_07084 "3' exoribonuclease" ... 107 6.1e-09 2
UNIPROTKB|Q95Z13 - symbol:RRP41A "Rrp41p homologue" speci... 146 1.9e-08 1
MGI|MGI:107889 - symbol:Exosc5 "exosome component 5" spec... 141 5.7e-08 1
POMBASE|SPBC115.01c - symbol:rrp46 "exosome subunit Rrp46... 140 6.3e-08 1
ZFIN|ZDB-GENE-060503-675 - symbol:exosc5 "exosome compone... 139 1.2e-07 1
UNIPROTKB|G4MM07 - symbol:MGG_06785 "Exosome complex exon... 95 1.7e-07 2
UNIPROTKB|E1BAG2 - symbol:EXOSC5 "Uncharacterized protein... 134 4.6e-07 1
RGD|1307861 - symbol:Exosc5 "exosome component 5" species... 134 4.6e-07 1
UNIPROTKB|Q9NQT4 - symbol:EXOSC5 "Exosome complex compone... 127 3.4e-06 1
UNIPROTKB|Q8IEW0 - symbol:EAP4 "Exosome-associated protei... 121 1.6e-05 1
UNIPROTKB|Q9KVD6 - symbol:rph "Ribonuclease PH" species:2... 120 2.6e-05 1
TIGR_CMR|VC_0210 - symbol:VC_0210 "ribonuclease PH" speci... 120 2.6e-05 1
FB|FBgn0037815 - symbol:Rrp46 "Rrp46" species:7227 "Droso... 118 4.2e-05 1
UNIPROTKB|Q10628 - symbol:rph "Ribonuclease PH" species:1... 118 5.8e-05 1
TIGR_CMR|CPS_0112 - symbol:CPS_0112 "ribonuclease PH" spe... 117 5.9e-05 1
UNIPROTKB|P50849 - symbol:pnp "Polyribonucleotide nucleot... 124 6.4e-05 1
SGD|S000003327 - symbol:RRP46 "Exosome non-catalytic core... 111 0.00026 1
TIGR_CMR|CJE_1390 - symbol:CJE_1390 "polyribonucleotide n... 117 0.00042 1
UNIPROTKB|P0CG19 - symbol:rph "RNase PH monomer" species:... 109 0.00048 1
TAIR|locus:2202705 - symbol:AT1G60080 "AT1G60080" species... 78 0.00058 2
>TAIR|locus:2124024 [details] [associations]
symbol:RRP41L "AT4G27490" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0006396 "RNA processing"
evidence=ISS] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0016570 "histone modification" evidence=RCA]
[GO:0034968 "histone lysine methylation" evidence=RCA] [GO:0048449
"floral organ formation" evidence=RCA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IMP] [GO:0009845 "seed germination" evidence=IMP]
[GO:0090351 "seedling development" evidence=IMP] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005634 GO:GO:0005737
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009845 GO:GO:0008408
InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689
HOGENOM:HOG000229515 Pfam:PF03725 SUPFAM:SSF55666 KO:K12587
OMA:GRLLCDF EMBL:BT029998 EMBL:BT030054 IPI:IPI00544536
RefSeq:NP_194479.2 UniGene:At.46035 ProteinModelPortal:A2RVK7
SMR:A2RVK7 IntAct:A2RVK7 STRING:A2RVK7 PaxDb:A2RVK7 PRIDE:A2RVK7
EnsemblPlants:AT4G27490.1 GeneID:828858 KEGG:ath:AT4G27490
TAIR:At4g27490 InParanoid:A2RVK7 PhylomeDB:A2RVK7
ProtClustDB:CLSN2680990 Genevestigator:A2RVK7 Uniprot:A2RVK7
Length = 256
Score = 1000 (357.1 bits), Expect = 7.9e-101, P = 7.9e-101
Identities = 184/238 (77%), Positives = 215/238 (90%)
Query: 23 KTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE 82
++R PIF SD+DW RPD RGFHQCRPA +TGAV+SASGSAYAEFGNTKVIVSVFGPRE
Sbjct: 19 RSRLPIFKDSDLDWSRPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNTKVIVSVFGPRE 78
Query: 83 SKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDV 142
SKKAM+YS++GRLNCNVSYT FA+P GQG+DHK++SSMLHKALEG I++ETFPKTTVDV
Sbjct: 79 SKKAMVYSDVGRLNCNVSYTNFASPTLGQGTDHKEYSSMLHKALEGVIMMETFPKTTVDV 138
Query: 143 FALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDG 202
FALVLESGGSDL V+ISCAS+ALADAGIMMYDL+ +VSVSC+GK+L+IDPV EEE +DG
Sbjct: 139 FALVLESGGSDLSVLISCASLALADAGIMMYDLITAVSVSCIGKSLMIDPVTEEEGCEDG 198
Query: 203 SLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDEQE 260
S M+ CMPSRYE+TQLT+TGEW+TP+ NEAMQLCLDAS+KLG+IMR CLK++AS E
Sbjct: 199 SFMMTCMPSRYEITQLTITGEWTTPNINEAMQLCLDASSKLGEIMRDCLKQSASASDE 256
>ZFIN|ZDB-GENE-050522-362 [details] [associations]
symbol:exosc6 "exosome component 6" species:7955
"Danio rerio" [GO:0000178 "exosome (RNase complex)"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR001247 Pfam:PF01138
ZFIN:ZDB-GENE-050522-362 GO:GO:0005737 GO:GO:0005730 GO:GO:0003723
GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364
HSSP:Q9UXC2 eggNOG:COG0689 GeneTree:ENSGT00550000074804
HOGENOM:HOG000229515 EMBL:BC065602 EMBL:BC095173 IPI:IPI00483784
RefSeq:NP_001018322.1 UniGene:Dr.80144 ProteinModelPortal:Q6P0I8
STRING:Q6P0I8 Ensembl:ENSDART00000052348 GeneID:326786
KEGG:dre:326786 CTD:118460 HOVERGEN:HBG057826 InParanoid:Q6P0I8
KO:K12587 OMA:GRLLCDF OrthoDB:EOG4D7Z6K NextBio:20809731
Bgee:Q6P0I8 Uniprot:Q6P0I8
Length = 271
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 92/251 (36%), Positives = 134/251 (53%)
Query: 20 PTRKTRPPIFSGSDVDWLRPDSR----GFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIV 75
P P +F D P SR G RP F R G V+ A GSAY E GNTK+I
Sbjct: 11 PEESQSPLLFLSPDKAPKAPSSRQGVRGNGDVRPVFARCGLVSQAKGSAYIEAGNTKIIC 70
Query: 76 SVFGPRESKKAMMYS-NIGRLNCNVSYTTFATPVRG---QGSDHKDFSSMLHKALEGAII 131
SV+GP+E+++ GRL C+ F+ RG QGS+ +D S+ L ++L +
Sbjct: 71 SVYGPKETERRDETDMKTGRLVCDFRLAPFSCVKRGAWIQGSEERDLSATLMESLRPGVC 130
Query: 132 LETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLID 191
L +P++ +DV +VLE+ GS L ++CAS+ALADAGI MYD+V ++ G L+D
Sbjct: 131 LHRYPRSQIDVNVMVLENDGSVLAHAVTCASMALADAGIEMYDIVLGCTLRQSGNACLVD 190
Query: 192 PVLEEE--SYQDG------SLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKL 243
P EE S+Q+G + +A +P+ +V+ L GE EAM+ C+D KL
Sbjct: 191 PSYAEECGSWQEGYGDNQGCVTLALLPNLNQVSGLNADGEMREDTLTEAMRTCMDGCHKL 250
Query: 244 GKIMRSCLKEA 254
+++ L A
Sbjct: 251 YPVVQQALTRA 261
>UNIPROTKB|Q28F19 [details] [associations]
symbol:exosc6 "Exosome complex component MTR3" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000178 "exosome (RNase
complex)" evidence=ISS] InterPro:IPR001247 Pfam:PF01138
GO:GO:0005737 GO:GO:0005730 GO:GO:0003723 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364 eggNOG:COG0689
GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515
HOVERGEN:HBG057826 KO:K12587 OrthoDB:EOG4D7Z6K EMBL:CR762221
EMBL:BC136080 RefSeq:NP_001017016.1 UniGene:Str.4704
ProteinModelPortal:Q28F19 SMR:Q28F19 STRING:Q28F19
Ensembl:ENSXETT00000016677 GeneID:549770 KEGG:xtr:549770 CTD:5916
Xenbase:XB-GENE-998313 OMA:LANCHSS Bgee:Q28F19 Uniprot:Q28F19
Length = 270
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 84/223 (37%), Positives = 126/223 (56%)
Query: 42 RGFHQCRPAFFRTGAVNSASGSAYAEFGN--TKVIVSVFGPRESKKAMMYSNI-GRLNCN 98
RG + RP F R G ++ A GSAY E G+ TKV+ +V GPRE + GRL C+
Sbjct: 35 RGPSEPRPVFVRAGLLSQAKGSAYLEAGSGGTKVLCAVHGPRERGMGGERAETRGRLLCD 94
Query: 99 VSYTTFAT--PVRGQ---GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSD 153
+ + F+ P G G + L ++LE A+ L+ +P+ V V+ LVLE GS
Sbjct: 95 LRWAPFSRRGPWSGSCPAGPSPRQAGLQLQESLEPAVRLDRYPRAEVIVWVLVLEDRGSA 154
Query: 154 LPVVISCASVALADAGIMMYDLVASVSVSC-LGKNLLIDPVL-EEESYQDGSLMIACMPS 211
LP +SCAS+ALADAGI M+DL +S G LL+DP EEE+ G++ ++ +P+
Sbjct: 155 LPAAVSCASLALADAGIEMFDLALGCGLSRGPGGELLLDPDDDEEEAGSGGTMSLSLLPT 214
Query: 212 RYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEA 254
+V+ L +GEW EA++LC++ +L ++ CL +A
Sbjct: 215 LNQVSGLISSGEWEGESSEEAVRLCMEGCQRLYPVLHQCLVKA 257
>RGD|1309832 [details] [associations]
symbol:Exosc6 "exosome component 6" species:10116 "Rattus
norvegicus" [GO:0000178 "exosome (RNase complex)" evidence=IEA;ISO]
[GO:0045006 "DNA deamination" evidence=IEA;ISO] [GO:0045190
"isotype switching" evidence=ISO] [GO:0045830 "positive regulation
of isotype switching" evidence=ISO] [GO:0004532 "exoribonuclease
activity" evidence=ISO] InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 RGD:1309832 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0045006 GeneTree:ENSGT00550000074804
SUPFAM:SSF55666 CTD:118460 KO:K12587 OMA:GRLLCDF OrthoDB:EOG4D7Z6K
IPI:IPI00359650 RefSeq:XP_003751927.1 RefSeq:XP_003753157.1
PRIDE:D3ZW38 Ensembl:ENSRNOT00000025179 GeneID:307850
KEGG:rno:307850 UCSC:RGD:1309832 Uniprot:D3ZW38
Length = 272
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 84/252 (33%), Positives = 133/252 (52%)
Query: 23 KTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE 82
+++PP ++ D P +R + RP + R G ++ A GSAY E G TKV+ +V GPR+
Sbjct: 13 ESQPPQLYAAEEDET-PAARDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQ 71
Query: 83 SKKAMMYSNI------------GRLNCNVSYTTFATPVRG--QGS-DHKDFSSMLHKALE 127
++ GRL C+ F+ R QGS + ++ L +ALE
Sbjct: 72 AEGGERGGGPAGAGGEAPAALRGRLLCDFRRAPFSGRRRRAPQGSSEDRELGLALQEALE 131
Query: 128 GAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCL-GK 186
A+ L +P+ ++V AL+LE GGS L ++ A++ALADAG+ MYDLV +S G
Sbjct: 132 PAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSLTPGP 191
Query: 187 N--LLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWS-TPHFNEAMQLCLDASAKL 243
+ L+DP EE + + L +A MP +V L +GE T + +A++L L+ +L
Sbjct: 192 SPTWLLDPTRLEEEHSEAGLTVALMPVLNQVAGLLGSGEGGQTESWTDAVRLGLEGCQRL 251
Query: 244 GKIMRSCLKEAA 255
+++ CL AA
Sbjct: 252 YPVLQQCLVRAA 263
>MGI|MGI:1919794 [details] [associations]
symbol:Exosc6 "exosome component 6" species:10090 "Mus
musculus" [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0045006 "DNA deamination" evidence=ISO]
[GO:0045190 "isotype switching" evidence=IMP] [GO:0045830 "positive
regulation of isotype switching" evidence=IMP] InterPro:IPR001247
InterPro:IPR015847 MGI:MGI:1919794 Pfam:PF01138 GO:GO:0005737
GO:GO:0005730 GO:GO:0003723 GO:GO:0000178 GO:GO:0045190
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364 HSSP:Q9UXC2
eggNOG:COG0689 HOGENOM:HOG000229515 SUPFAM:SSF55666 CTD:118460
HOVERGEN:HBG057826 KO:K12587 OrthoDB:EOG4D7Z6K EMBL:AK012102
EMBL:AK088532 EMBL:BC116985 EMBL:BC119082 IPI:IPI00466593
RefSeq:NP_082550.1 UniGene:Mm.24174 UniGene:Mm.334810
ProteinModelPortal:Q8BTW3 SMR:Q8BTW3 IntAct:Q8BTW3 STRING:Q8BTW3
PhosphoSite:Q8BTW3 PaxDb:Q8BTW3 PRIDE:Q8BTW3 GeneID:72544
KEGG:mmu:72544 UCSC:uc009nlp.1 InParanoid:Q8BTW3 NextBio:336459
CleanEx:MM_EXOSC6 Genevestigator:Q8BTW3 Uniprot:Q8BTW3
Length = 273
Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 83/256 (32%), Positives = 130/256 (50%)
Query: 20 PTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFG 79
P P +++ D + P +R + RP + R G ++ A GSAY E G TKV+ +V G
Sbjct: 11 PEESQPPQLYAAEDDE--TPAARDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSG 68
Query: 80 PRESKKAMMYSNI------------GRLNCNVSYTTFATPVR----GQGSDHKDFSSMLH 123
PR+++ S GRL C+ F+ R G G + ++ L
Sbjct: 69 PRQAEGGERGSGPAGAGGEAPAALRGRLLCDFRRAPFSGRRRRAPQGGGGEDRELGLALQ 128
Query: 124 KALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSC 183
+ALE A+ L +P+ ++V AL+LE GG L ++ A++ALADAG+ MYDLV +S
Sbjct: 129 EALEPAVRLGRYPRAQLEVSALLLEDGGCALAAALTAAALALADAGVEMYDLVVGCGLSL 188
Query: 184 L-GKN--LLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWS-TPHFNEAMQLCLDA 239
G + L+DP EE + L +A MP +V L +GE T + +A++L L+
Sbjct: 189 TPGPSPTWLLDPTRLEEEHSAAGLTVALMPVLNQVAGLLGSGEGGQTESWTDAVRLGLEG 248
Query: 240 SAKLGKIMRSCLKEAA 255
+L +++ CL AA
Sbjct: 249 CQRLYPVLQQCLVRAA 264
>UNIPROTKB|Q5RKV6 [details] [associations]
symbol:EXOSC6 "Exosome complex component MTR3" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000178 "exosome (RNase complex)" evidence=IDA]
[GO:0045190 "isotype switching" evidence=ISS] [GO:0045006 "DNA
deamination" evidence=IDA] [GO:0004532 "exoribonuclease activity"
evidence=IDA] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005829 GO:GO:0010467 GO:GO:0005730
GO:GO:0003723 GO:GO:0000178 GO:GO:0045190 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0006364 GO:GO:0043928 PDB:2NN6 PDBsum:2NN6
GO:GO:0045006 HOGENOM:HOG000229515 SUPFAM:SSF55666 CTD:118460
HOVERGEN:HBG057826 KO:K12587 OMA:GRLLCDF OrthoDB:EOG4D7Z6K
EMBL:AC009060 EMBL:BC052252 IPI:IPI00073602 RefSeq:NP_478126.1
UniGene:Hs.660633 UniGene:Hs.740491 ProteinModelPortal:Q5RKV6
SMR:Q5RKV6 IntAct:Q5RKV6 STRING:Q5RKV6 PhosphoSite:Q5RKV6
DMDM:74736141 PaxDb:Q5RKV6 PeptideAtlas:Q5RKV6 PRIDE:Q5RKV6
Ensembl:ENST00000435634 GeneID:118460 KEGG:hsa:118460
UCSC:uc002eym.1 GeneCards:GC16M070284 HGNC:HGNC:19055 MIM:606490
neXtProt:NX_Q5RKV6 PharmGKB:PA134932096 eggNOG:NOG303282
InParanoid:Q5RKV6 PhylomeDB:Q5RKV6 ChiTaRS:EXOSC6
EvolutionaryTrace:Q5RKV6 GenomeRNAi:118460 NextBio:80292
Bgee:Q5RKV6 CleanEx:HS_EXOSC6 Genevestigator:Q5RKV6 Uniprot:Q5RKV6
Length = 272
Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
Identities = 85/253 (33%), Positives = 130/253 (51%)
Query: 23 KTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE 82
+++PP +D + P +R + RP + R G ++ A GSAY E G TKV+ +V GPR+
Sbjct: 13 ESQPPQLYAADEEEA-PGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQ 71
Query: 83 SKKAMMYSNI------------GRLNCNVSYTTFATPVRGQ---GSDHKDFSSMLHKALE 127
++ GRL C+ FA R G + ++ + L +ALE
Sbjct: 72 AEGGERGGGPAGAGGEAPAALRGRLLCDFRRAPFAGRRRRAPPGGCEERELALALQEALE 131
Query: 128 GAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCL--- 184
A+ L +P+ ++V AL+LE GGS L ++ A++ALADAG+ MYDLV +S
Sbjct: 132 PAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSLAPGP 191
Query: 185 GKNLLIDPV-LEEESYQDGSLMIACMPSRYEVTQLTVTGEWS-TPHFNEAMQLCLDASAK 242
L+DP LEEE G L +A MP +V L +GE T + EA++L L+ +
Sbjct: 192 APTWLLDPTRLEEERAAAG-LTVALMPVLNQVAGLLGSGEGGLTESWAEAVRLGLEGCQR 250
Query: 243 LGKIMRSCLKEAA 255
L +++ L AA
Sbjct: 251 LYPVLQQSLVRAA 263
>FB|FBgn0032487 [details] [associations]
symbol:Ski6 "Ski6" species:7227 "Drosophila melanogaster"
[GO:0000176 "nuclear exosome (RNase complex)" evidence=ISS;IDA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISS]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=ISS]
[GO:0035327 "transcriptionally active chromatin" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005652 "nuclear lamina"
evidence=IDA] [GO:0010468 "regulation of gene expression"
evidence=IMP] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0010468 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0035327 GO:GO:0005652 GO:GO:0000176 eggNOG:COG0689
SUPFAM:SSF55666 EMBL:AY071632 ProteinModelPortal:Q8SYC8 SMR:Q8SYC8
IntAct:Q8SYC8 STRING:Q8SYC8 PaxDb:Q8SYC8 PRIDE:Q8SYC8
FlyBase:FBgn0032487 InParanoid:Q8SYC8 OrthoDB:EOG4Z08NJ
ArrayExpress:Q8SYC8 Bgee:Q8SYC8 Uniprot:Q8SYC8
Length = 246
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 64/222 (28%), Positives = 112/222 (50%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R H+ R + G GSAY E GNTKV+ +V+GP ++K S I N
Sbjct: 13 LRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGNQTESVI---N 69
Query: 97 CNVSYTTFATPVRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
C S TF+T R D K +F L +AL AI E +P++ +D++ VL+ G+
Sbjct: 70 CQYSQATFSTAERKNRPRGDRKSLEFKLYLQQALSAAIKSELYPRSQIDIYVEVLQDDGA 129
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDG-SLMIACMPS 211
+ V ++ A++AL DAGI + + + + + S N+ + + + E G L +A +P+
Sbjct: 130 NYAVALNAATLALIDAGICLNEFIVACTASLSKSNIPLTDISQFEEVSGGPKLTVAALPT 189
Query: 212 RYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
++ L ++ + H ++ + ++ I+ + +KE
Sbjct: 190 AEKIAFLEMSERFHIDHLGTVIETAMAGCREIRDILEAAVKE 231
>UNIPROTKB|F1S435 [details] [associations]
symbol:EXOSC6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045006 "DNA deamination" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] InterPro:IPR001247
Pfam:PF01138 GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0045006 GeneTree:ENSGT00550000074804 OMA:GRLLCDF
EMBL:CU929739 Ensembl:ENSSSCT00000003013 Uniprot:F1S435
Length = 254
Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 83/253 (32%), Positives = 126/253 (49%)
Query: 20 PTRKTRPPIFS-GSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVF 78
P P +++ G D + P +R + RP + R G ++ A GSAY E G TKV+ +V
Sbjct: 11 PEESQPPQLYAVGEDEE---PAARDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVS 67
Query: 79 GPRESKKAMMYSNI------------GRLNCNVSYTTFATPVRGQ---GSDHKDFSSMLH 123
GPR+++ GRL C+ F+ R G + ++ + L
Sbjct: 68 GPRQAEGGERGGGPAGTGGEAPAALRGRLLCDFRRAPFSGRRRRAPPGGGEERELALALQ 127
Query: 124 KALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSC 183
+ALE A+ L +P+ ++V AL+LE GGS L ++ A++ALADAGI MYDLV V C
Sbjct: 128 EALEPAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGIEMYDLV----VGC 183
Query: 184 LGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWS-TPHFNEAMQLCLDASAK 242
+ EE SL +A MP +V L +GE T + EA++L L+ +
Sbjct: 184 V-----------EEERAAASLTVALMPVLNQVAGLLGSGEGGPTESWAEAVRLGLEGCQR 232
Query: 243 LGKIMRSCLKEAA 255
L +++ CL AA
Sbjct: 233 LYPVLQQCLVRAA 245
>TAIR|locus:2076710 [details] [associations]
symbol:RRP41 "AT3G61620" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0006396 "RNA processing"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005829
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0004527 EMBL:AL132959
InterPro:IPR020568 SUPFAM:SSF54211 KO:K11600 eggNOG:COG0689
HOGENOM:HOG000229515 OMA:DVFIEVL Pfam:PF03725 SUPFAM:SSF55666
HSSP:P50597 EMBL:AF191741 EMBL:BT005485 EMBL:AK118846
IPI:IPI00547870 PIR:T47954 RefSeq:NP_001118878.1 RefSeq:NP_191721.1
UniGene:At.20638 ProteinModelPortal:Q9SP08 SMR:Q9SP08 IntAct:Q9SP08
STRING:Q9SP08 PaxDb:Q9SP08 PRIDE:Q9SP08 DNASU:825335
EnsemblPlants:AT3G61620.1 EnsemblPlants:AT3G61620.2 GeneID:825335
KEGG:ath:AT3G61620 TAIR:At3g61620 InParanoid:Q9SP08
PhylomeDB:Q9SP08 ProtClustDB:CLSN2685258 ArrayExpress:Q9SP08
Genevestigator:Q9SP08 Uniprot:Q9SP08
Length = 241
Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 69/222 (31%), Positives = 108/222 (48%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSNIGR 94
LR D R F++ R G V+ A GSA E GNTKVI +V+GPRE +K ++
Sbjct: 9 LRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHAV 68
Query: 95 LNCNVSYTTFAT-PVRGQGSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ C S F+T R Q D + + S ++ + +E I+ E P + +D+F VL++ G
Sbjct: 69 VLCEYSMAQFSTGDRRRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQVLQADG 128
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS 211
I+ A++ALADAGI M DL S S L L+D E+S + + +P
Sbjct: 129 GTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLLDLNYVEDSAGGADVTVGILPK 188
Query: 212 RYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
+V+ L + + F L + + + +R L+E
Sbjct: 189 LDKVSLLQMDAKLPMETFETVFALASEGCKAIAERIREVLQE 230
>ZFIN|ZDB-GENE-040426-1702 [details] [associations]
symbol:exosc4 "exosome component 4" species:7955
"Danio rerio" [GO:0004527 "exonuclease activity" evidence=IEA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
ZFIN:ZDB-GENE-040426-1702 GO:GO:0004527 InterPro:IPR020568
SUPFAM:SSF54211 KO:K11600 CTD:54512 HOGENOM:HOG000229515
HOVERGEN:HBG051519 Pfam:PF03725 SUPFAM:SSF55666 EMBL:BC059525
EMBL:BC153617 EMBL:AY576990 IPI:IPI00485513 RefSeq:NP_957033.1
UniGene:Dr.107456 SMR:Q6PBZ8 DNASU:393712 GeneID:393712
KEGG:dre:393712 InParanoid:Q6PBZ8 NextBio:20814714 Uniprot:Q6PBZ8
Length = 245
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 64/222 (28%), Positives = 105/222 (47%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR--L 95
R D R + R R A GSAY E GNTK + V+GP E + + S R +
Sbjct: 13 RLDGRKATELRKVQARMSVFAQADGSAYLEQGNTKALAVVYGPHEIRGSRSKSLHDRAII 72
Query: 96 NCNVSYTTFATPVRGQG--SDHKDFSSMLH--KALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K LH + E A++ E +P++ +D++ +L++ G
Sbjct: 73 NCQYSMATFSTAERKRRPHGDRKSSEMSLHLKQTFEAAVLTELYPRSQIDIYVKILQADG 132
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS 211
+ ++ A++AL DAGI M D V + S + L D EES +L +A +P
Sbjct: 133 GNYSACVNAATLALVDAGIPMRDYVCACSAGFVEDTPLADLCHAEESGGGTALALALLPR 192
Query: 212 RYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
+ L + H + M+ + A + K++ S +++
Sbjct: 193 SGNIALLQMDARLHQDHLDTLMEAAMTACKEFSKVLDSVVRQ 234
>POMBASE|SPBC211.08c [details] [associations]
symbol:SPBC211.08c "exosomal 3'-5' exoribonuclease,
PH-like (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISM]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=ISO]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=ISO]
[GO:0000467 "exonucleolytic trimming to generate mature 3'-end of
5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0034661
"ncRNA catabolic process" evidence=ISO] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=ISO] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=ISO] [GO:0070651 "nonfunctional rRNA decay" evidence=ISO]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=ISO] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=ISO]
[GO:0071042 "nuclear polyadenylation-dependent mRNA catabolic
process" evidence=ISO] InterPro:IPR001247 Pfam:PF01138
PomBase:SPBC211.08c GO:GO:0005829 GO:GO:0005730 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0071035 GO:GO:0071038
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000176 GO:GO:0000175
GO:GO:0000177 GO:GO:0000467 GO:GO:0070651 GO:GO:0071042
GO:GO:0070478 GO:GO:0070481 HSSP:Q9UXC2 eggNOG:COG0689
HOGENOM:HOG000229515 PROSITE:PS01277 KO:K12587 PIR:T50343
RefSeq:NP_596618.1 ProteinModelPortal:Q9P7R3 STRING:Q9P7R3
EnsemblFungi:SPBC211.08c.1 GeneID:2540412 KEGG:spo:SPBC211.08c
OMA:ADANIDC OrthoDB:EOG415KPS NextBio:20801539 Uniprot:Q9P7R3
Length = 257
Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 74/222 (33%), Positives = 109/222 (49%)
Query: 26 PPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK 85
PP F + + +R +CR + + G A GS+Y E K+ +V GPR SK
Sbjct: 15 PPYFEEPEQP-VFTRTRDVDRCRKIYLKLGWATKAVGSSYFESEKIKIACTVSGPRPSK- 72
Query: 86 AMMYSNIGRLNCNVSYTTFATPVR-G--QGSDHKDFSSMLHKALEGAIILETFPKTTVDV 142
+ + +LNC + F+T VR G Q + K +S M+ A+ +I+L +PK+++DV
Sbjct: 73 TFAFRSSAKLNCEFRLSPFSTSVRQGHVQTVEEKSYSQMIEAAISPSILLHLYPKSSIDV 132
Query: 143 FALVLESGGS--DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNL---LIDP--VLE 195
+ V+ES G+ L ISCAS A+ADA I DLV SV N IDP V E
Sbjct: 133 YIQVIESDGALATLAAAISCASSAIADANIDCIDLVTGSSV-LFNPNTDEYWIDPDYVDE 191
Query: 196 EESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCL 237
GS+++ M S VTQ+ G S + + C+
Sbjct: 192 RARAAKGSVVMGYMASLGHVTQVWERGTCSPSRLSFLTEKCI 233
>WB|WBGene00007201 [details] [associations]
symbol:exos-4.1 species:6239 "Caenorhabditis elegans"
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0009792 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0005730 GO:GO:0008406
GO:GO:0002119 GO:GO:0010171 GO:GO:0040018 GO:GO:0003723
GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364
eggNOG:COG0689 GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515
OMA:DVFIEVL Pfam:PF03725 SUPFAM:SSF55666 EMBL:Z73422 PIR:B88880
RefSeq:NP_001021274.1 ProteinModelPortal:Q17533 SMR:Q17533
STRING:Q17533 PaxDb:Q17533 PRIDE:Q17533 EnsemblMetazoa:B0564.1a
GeneID:13198805 KEGG:cel:CELE_B0564.1a CTD:13198805
WormBase:B0564.1a InParanoid:Q17533 NextBio:900408
ArrayExpress:Q17533 InterPro:IPR018336 PROSITE:PS01277
Uniprot:Q17533
Length = 240
Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 68/226 (30%), Positives = 106/226 (46%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R Q R R G +A GS Y E GNTKV+ +V+GP E K + + + C
Sbjct: 10 RIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKSSKRIEDKCAIVC 69
Query: 98 NVSYTTFATPVRGQGS--DHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSD 153
S T F+ R + D K + S +L KA E I+ E FP++ +D+F V++ GS+
Sbjct: 70 QYSATKFSGLERKNRTRGDRKSTEISRLLEKAFESVILTEAFPRSQLDIFCEVIQGDGSN 129
Query: 154 LPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRY 213
L ++ S+ALADAGI M + ++ + + ++D EE+ + +A + R
Sbjct: 130 LAACVNATSLALADAGIPMKGIASAATCGVVDGKPIVDLTSREETDLLPRVTLATICGRD 189
Query: 214 EVTQLTVTGEWSTPHFNEAMQL----CLDASAKLGKIMRSCLKEAA 255
EV + + H + M C D L + + LK A
Sbjct: 190 EVILVELQNRLHIDHLSTVMDAAKATCADVYECLAVVAQQHLKACA 235
>UNIPROTKB|Q17533 [details] [associations]
symbol:exos-4.1 "Putative exosome complex component RRP41"
species:6239 "Caenorhabditis elegans" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0009792 GO:GO:0005737 GO:GO:0040007 GO:GO:0040010
GO:GO:0005730 GO:GO:0008406 GO:GO:0002119 GO:GO:0010171
GO:GO:0040018 GO:GO:0003723 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0006364 eggNOG:COG0689
GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515 OMA:DVFIEVL
Pfam:PF03725 SUPFAM:SSF55666 EMBL:Z73422 PIR:B88880
RefSeq:NP_001021274.1 ProteinModelPortal:Q17533 SMR:Q17533
STRING:Q17533 PaxDb:Q17533 PRIDE:Q17533 EnsemblMetazoa:B0564.1a
GeneID:13198805 KEGG:cel:CELE_B0564.1a CTD:13198805
WormBase:B0564.1a InParanoid:Q17533 NextBio:900408
ArrayExpress:Q17533 InterPro:IPR018336 PROSITE:PS01277
Uniprot:Q17533
Length = 240
Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 68/226 (30%), Positives = 106/226 (46%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R Q R R G +A GS Y E GNTKV+ +V+GP E K + + + C
Sbjct: 10 RIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKSSKRIEDKCAIVC 69
Query: 98 NVSYTTFATPVRGQGS--DHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSD 153
S T F+ R + D K + S +L KA E I+ E FP++ +D+F V++ GS+
Sbjct: 70 QYSATKFSGLERKNRTRGDRKSTEISRLLEKAFESVILTEAFPRSQLDIFCEVIQGDGSN 129
Query: 154 LPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRY 213
L ++ S+ALADAGI M + ++ + + ++D EE+ + +A + R
Sbjct: 130 LAACVNATSLALADAGIPMKGIASAATCGVVDGKPIVDLTSREETDLLPRVTLATICGRD 189
Query: 214 EVTQLTVTGEWSTPHFNEAMQL----CLDASAKLGKIMRSCLKEAA 255
EV + + H + M C D L + + LK A
Sbjct: 190 EVILVELQNRLHIDHLSTVMDAAKATCADVYECLAVVAQQHLKACA 235
>UNIPROTKB|E2RIM3 [details] [associations]
symbol:EXOSC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071044 "histone mRNA catabolic process"
evidence=IEA] [GO:0071028 "nuclear mRNA surveillance" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0045006
"DNA deamination" evidence=IEA] [GO:0035327 "transcriptionally
active chromatin" evidence=IEA] [GO:0030307 "positive regulation of
cell growth" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000460
"maturation of 5.8S rRNA" evidence=IEA] [GO:0000178 "exosome (RNase
complex)" evidence=IEA] InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005634 GO:GO:0030307 GO:GO:0051607
GO:GO:0017091 GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0035327 GO:GO:0071044 KO:K11600 GO:GO:0000460 GO:GO:0045006
CTD:54512 GeneTree:ENSGT00550000074804 OMA:DVFIEVL GO:GO:0071028
Pfam:PF03725 SUPFAM:SSF55666 EMBL:AAEX03008955 RefSeq:XP_539207.1
Ensembl:ENSCAFT00000002371 GeneID:482086 KEGG:cfa:482086
NextBio:20856762 Uniprot:E2RIM3
Length = 245
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 64/228 (28%), Positives = 106/228 (46%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + +A + +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 96 NCNVSYTTFATPVRGQG--SDHKDFSSMLH--KALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K LH + E AI+ + P++ +D++ VL++ G
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLHLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS 211
++ A++A+ DAGI M D V + S + L D EE+ L +A +P+
Sbjct: 133 GTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDNTALADLSHVEEAAGGPQLALALLPA 192
Query: 212 RYEVTQLTVTGEWSTPHFNEAMQLCL----DASAKLGKIMRSCLKEAA 255
++ L + H + ++ D L +++R ++EA+
Sbjct: 193 SGQIALLEMDARLHEDHLEQVLEAAARAARDVHTVLDRVVRQHVREAS 240
>UNIPROTKB|F1RSL0 [details] [associations]
symbol:EXOSC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071044 "histone mRNA catabolic process" evidence=IEA]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0051607
"defense response to virus" evidence=IEA] [GO:0045006 "DNA
deamination" evidence=IEA] [GO:0035327 "transcriptionally active
chromatin" evidence=IEA] [GO:0030307 "positive regulation of cell
growth" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000460
"maturation of 5.8S rRNA" evidence=IEA] [GO:0000178 "exosome (RNase
complex)" evidence=IEA] InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005634 GO:GO:0030307 GO:GO:0051607
GO:GO:0017091 GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0035327 GO:GO:0071044 KO:K11600 GO:GO:0000460 GO:GO:0045006
GeneTree:ENSGT00550000074804 OMA:DVFIEVL GO:GO:0071028 Pfam:PF03725
SUPFAM:SSF55666 EMBL:FP085471 RefSeq:XP_003125499.1
UniGene:Ssc.8432 Ensembl:ENSSSCT00000006505 GeneID:100511875
KEGG:ssc:100511875 Uniprot:F1RSL0
Length = 245
Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 65/228 (28%), Positives = 107/228 (46%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + ++ + +
Sbjct: 13 RVDGRRARELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72
Query: 96 NCNVSYTTFATPVRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K + L +A E AI+ + P++ +D++ VL++ G
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQAFEAAILTQLHPRSQIDIYVQVLQADG 132
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS 211
++ A++A+ DAGI M D V + S + L D EE+ L +A +P+
Sbjct: 133 GIYAACVNVATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPA 192
Query: 212 RYEVTQLTVTGEWSTPHFNE----AMQLCLDASAKLGKIMRSCLKEAA 255
++ L + H + A Q D L +++R ++EA+
Sbjct: 193 SGQIALLEMDARLHEDHLEQVLEAAAQAARDVHTVLDRVVRQHVQEAS 240
>UNIPROTKB|Q9NPD3 [details] [associations]
symbol:EXOSC4 "Exosome complex component RRP41"
species:9606 "Homo sapiens" [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=NAS] [GO:0005730 "nucleolus" evidence=NAS]
[GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0006364 "rRNA
processing" evidence=NAS] [GO:0071044 "histone mRNA catabolic
process" evidence=IMP] [GO:0000178 "exosome (RNase complex)"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IMP] [GO:0045006
"DNA deamination" evidence=IDA] [GO:0017091 "AU-rich element
binding" evidence=IDA] [GO:0035327 "transcriptionally active
chromatin" evidence=IMP] [GO:0004532 "exoribonuclease activity"
evidence=IDA] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=IMP] [GO:0071028 "nuclear mRNA surveillance"
evidence=IMP] [GO:0030307 "positive regulation of cell growth"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0051607
"defense response to virus" evidence=IMP] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005829 GO:GO:0030307 GO:GO:0005730
GO:GO:0051607 GO:GO:0017091 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0071044 KO:K11600 GO:GO:0000460
GO:GO:0000175 GO:GO:0043928 PDB:2NN6 PDBsum:2NN6 GO:GO:0045006
CTD:54512 eggNOG:COG0689 HOGENOM:HOG000229515 HOVERGEN:HBG051519
OMA:DVFIEVL OrthoDB:EOG4PC9T0 GO:GO:0071028 Pfam:PF03725
SUPFAM:SSF55666 EMBL:AF281133 EMBL:AK000598 EMBL:AC109322
EMBL:BC002777 IPI:IPI00745613 RefSeq:NP_061910.1 UniGene:Hs.632041
ProteinModelPortal:Q9NPD3 SMR:Q9NPD3 IntAct:Q9NPD3 STRING:Q9NPD3
PhosphoSite:Q9NPD3 DMDM:14285756 SWISS-2DPAGE:Q9NPD3 PaxDb:Q9NPD3
PRIDE:Q9NPD3 DNASU:54512 Ensembl:ENST00000316052
Ensembl:ENST00000568113 GeneID:54512 KEGG:hsa:54512 UCSC:uc003zau.3
GeneCards:GC08P145133 HGNC:HGNC:18189 HPA:HPA024792 MIM:606491
neXtProt:NX_Q9NPD3 PharmGKB:PA134867931 InParanoid:Q9NPD3
PhylomeDB:Q9NPD3 EvolutionaryTrace:Q9NPD3 GenomeRNAi:54512
NextBio:56896 ArrayExpress:Q9NPD3 Bgee:Q9NPD3 CleanEx:HS_EXOSC4
Genevestigator:Q9NPD3 GermOnline:ENSG00000178896 Uniprot:Q9NPD3
Length = 245
Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
Identities = 65/228 (28%), Positives = 105/228 (46%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + +A + +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 96 NCNVSYTTFATPVRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K + L + E AI+ + P++ +D++ VL++ G
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS 211
++ A++A+ DAGI M D V + S + L D EE+ L +A +P+
Sbjct: 133 GTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPA 192
Query: 212 RYEVTQLTVTGEWSTPHFNE----AMQLCLDASAKLGKIMRSCLKEAA 255
++ L + H A Q D L +++R ++EA+
Sbjct: 193 SGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQHVREAS 240
>UNIPROTKB|Q7YRA3 [details] [associations]
symbol:EXOSC4 "Exosome complex component RRP41"
species:9913 "Bos taurus" [GO:0000178 "exosome (RNase complex)"
evidence=ISS] [GO:0071044 "histone mRNA catabolic process"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071028 "nuclear mRNA surveillance"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045006 "DNA deamination" evidence=IEA] [GO:0035327
"transcriptionally active chromatin" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0000460 "maturation of
5.8S rRNA" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0030307 GO:GO:0005730 GO:GO:0051607
GO:GO:0017091 GO:GO:0004527 GO:GO:0090305 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0071044
KO:K11600 GO:GO:0000460 GO:GO:0045006 EMBL:AJ518955 EMBL:BC109819
IPI:IPI00697313 RefSeq:NP_001071554.1 UniGene:Bt.16597 HSSP:Q9UXC2
ProteinModelPortal:Q7YRA3 SMR:Q7YRA3 STRING:Q7YRA3
Ensembl:ENSBTAT00000019451 GeneID:618292 KEGG:bta:618292 CTD:54512
eggNOG:COG0689 GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515
HOVERGEN:HBG051519 InParanoid:Q7YRA3 OMA:DVFIEVL OrthoDB:EOG4PC9T0
NextBio:20901104 GO:GO:0071028 Pfam:PF03725 SUPFAM:SSF55666
Uniprot:Q7YRA3
Length = 245
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 64/228 (28%), Positives = 107/228 (46%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + +A + +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 96 NCNVSYTTFATPVRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K + L + E AI+ + P++ +D++ VL++ G
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS 211
++ A++A+ DAGI M D V + S + L D EE+ L +A +P+
Sbjct: 133 GTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPA 192
Query: 212 RYEVTQLTVTGEWSTPHFNEAMQLCLDASAK----LGKIMRSCLKEAA 255
++ L + H + ++ AS L +++R ++EA+
Sbjct: 193 SGQIALLEMDARLHEDHLEQVLEAAARASRDVHTVLDRVVRQHVQEAS 240
>RGD|1310986 [details] [associations]
symbol:Exosc4 "exosome component 4" species:10116 "Rattus
norvegicus" [GO:0000178 "exosome (RNase complex)" evidence=IEA;ISO]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IEA;ISO] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=ISO]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=IEA;ISO] [GO:0030307 "positive regulation of cell growth"
evidence=IEA;ISO] [GO:0035327 "transcriptionally active chromatin"
evidence=IEA;ISO] [GO:0045006 "DNA deamination" evidence=IEA;ISO]
[GO:0051607 "defense response to virus" evidence=IEA;ISO]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA;ISO]
[GO:0071044 "histone mRNA catabolic process" evidence=IEA;ISO]
[GO:0004532 "exoribonuclease activity" evidence=ISO]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 RGD:1310986
GO:GO:0005634 GO:GO:0030307 GO:GO:0051607 GO:GO:0017091
GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0035327
GO:GO:0071044 KO:K11600 GO:GO:0000460 GO:GO:0045006 CTD:54512
GeneTree:ENSGT00550000074804 OrthoDB:EOG4PC9T0 GO:GO:0071028
Pfam:PF03725 SUPFAM:SSF55666 IPI:IPI00366418 RefSeq:NP_001128332.1
UniGene:Rn.28481 PRIDE:D4A4Y0 Ensembl:ENSRNOT00000016464
GeneID:300045 KEGG:rno:300045 UCSC:RGD:1310986 NextBio:646189
Uniprot:D4A4Y0
Length = 245
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 64/228 (28%), Positives = 106/228 (46%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + ++ + +
Sbjct: 13 RIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72
Query: 96 NCNVSYTTFATPVRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K + L + E AI+ + P++ +D++ VL++ G
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS 211
++ A++A+ DAGI M D V + S + L D EE+ L +A +P+
Sbjct: 133 GTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPA 192
Query: 212 RYEVTQLTVTGEWSTPHFNE----AMQLCLDASAKLGKIMRSCLKEAA 255
++ L + H + A Q D L +++R ++EA+
Sbjct: 193 SGQIALLEMDSRLHEDHLEQVLEAAAQAARDVHTLLDRVVRQHVQEAS 240
>FB|FBgn0036916 [details] [associations]
symbol:Mtr3 "Mtr3" species:7227 "Drosophila melanogaster"
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISS]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=ISS;IDA]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0010468 "regulation of
gene expression" evidence=IMP] InterPro:IPR001247 Pfam:PF01138
GO:GO:0005737 EMBL:AE014296 GO:GO:0016787 GO:GO:0010468
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000176
GeneTree:ENSGT00550000074804 KO:K12587 FlyBase:FBgn0036916
UniGene:Dm.13639 EMBL:BT030767 RefSeq:NP_649157.1 UniGene:Dm.27179
SMR:Q9VW53 IntAct:Q9VW53 MINT:MINT-905327 STRING:Q9VW53
EnsemblMetazoa:FBtr0074918 GeneID:40173 KEGG:dme:Dmel_CG8025
UCSC:CG8025-RA CTD:40173 InParanoid:Q9VW53 OMA:STAINCC
GenomeRNAi:40173 NextBio:817403 Uniprot:Q9VW53
Length = 326
Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
Identities = 59/186 (31%), Positives = 94/186 (50%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS-NIGRLNCNVSYTTFAT 106
R F R G + + GSAY E+GNTKV+ V P+E +A N+G LNC V++ F+T
Sbjct: 48 RNTFIRAGVLTTVRGSAYMEYGNTKVLAIVAPPKELIRASARRMNMGVLNCYVNFAAFST 107
Query: 107 -PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVAL 165
+ + SSML KA+E + F +D+ L+L+ G L I+C VAL
Sbjct: 108 GDLDSVPERERHLSSMLTKAMEPVVCRTEFLNFQLDIRVLILDDDGCLLSTAINCCGVAL 167
Query: 166 ADAGIMMYDLVASVSVSCLGKN-LLIDPVLEEES----YQDGSLMIACMPSRYEVTQLTV 220
+ GI YDL+ + S +C+ ++ + ++P + E +++ S PS + L +
Sbjct: 168 VECGISTYDLITA-STACIYRDHVFLNPSAKVEELLWKHRNSSTDSTTSPSSAQEHGLII 226
Query: 221 TGEWST 226
T T
Sbjct: 227 TASMDT 232
>MGI|MGI:1923576 [details] [associations]
symbol:Exosc4 "exosome component 4" species:10090 "Mus
musculus" [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0000460 "maturation of 5.8S rRNA" evidence=ISO] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0035327 "transcriptionally active chromatin" evidence=ISO]
[GO:0045006 "DNA deamination" evidence=ISO] [GO:0051607 "defense
response to virus" evidence=ISO] [GO:0071028 "nuclear mRNA
surveillance" evidence=ISO] [GO:0071044 "histone mRNA catabolic
process" evidence=ISO] InterPro:IPR001247 InterPro:IPR015847
MGI:MGI:1923576 Pfam:PF01138 GO:GO:0005737 GO:GO:0030307
GO:GO:0005730 GO:GO:0051607 GO:GO:0017091 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0071044
KO:K11600 GO:GO:0000460 GO:GO:0045006 CTD:54512 eggNOG:COG0689
GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515
HOVERGEN:HBG051519 OMA:DVFIEVL OrthoDB:EOG4PC9T0 GO:GO:0071028
Pfam:PF03725 SUPFAM:SSF55666 EMBL:BC012277 IPI:IPI00310857
RefSeq:NP_780608.1 UniGene:Mm.322752 ProteinModelPortal:Q921I9
SMR:Q921I9 STRING:Q921I9 PhosphoSite:Q921I9 PaxDb:Q921I9
PRIDE:Q921I9 Ensembl:ENSMUST00000059045 GeneID:109075
KEGG:mmu:109075 InParanoid:Q921I9 ChiTaRS:EXOSC4 NextBio:361620
Bgee:Q921I9 CleanEx:MM_EXOSC4 Genevestigator:Q921I9
GermOnline:ENSMUSG00000034259 Uniprot:Q921I9
Length = 245
Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 62/228 (27%), Positives = 106/228 (46%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + ++ + +
Sbjct: 13 RIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72
Query: 96 NCNVSYTTFATPVRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K + L + E AI+ + P++ +D++ VL++ G
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS 211
++ A++A+ DAGI M D V + S + L D EE+ L +A +P+
Sbjct: 133 GTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPA 192
Query: 212 RYEVTQLTVTGEWSTPHFNEAMQLCLDAS----AKLGKIMRSCLKEAA 255
++ L + H + ++ A+ L ++R ++EA+
Sbjct: 193 SGQIALLEMDSRLHEDHLEQVLEAAAQAARGVHTLLDLVVRQHVQEAS 240
>CGD|CAL0002905 [details] [associations]
symbol:orf19.4582 species:5476 "Candida albicans" [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=IEA] [GO:0000176
"nuclear exosome (RNase complex)" evidence=IEA] [GO:0034473 "U1
snRNA 3'-end processing" evidence=IEA] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=IEA] [GO:0016075 "rRNA catabolic
process" evidence=IEA] [GO:0034476 "U5 snRNA 3'-end processing"
evidence=IEA] [GO:0071028 "nuclear mRNA surveillance" evidence=IEA]
[GO:0000467 "exonucleolytic trimming to generate mature 3'-end of
5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IEA] [GO:0071039 "nuclear
polyadenylation-dependent CUT catabolic process" evidence=IEA]
[GO:0071051 "polyadenylation-dependent snoRNA 3'-end processing"
evidence=IEA] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IEA] [GO:0071038 "nuclear polyadenylation-dependent tRNA
catabolic process" evidence=IEA] InterPro:IPR001247 CGD:CAL0002905
InterPro:IPR015847 Pfam:PF01138 EMBL:AACQ01000005 EMBL:AACQ01000006
InterPro:IPR020568 SUPFAM:SSF54211 KO:K11600 eggNOG:COG0689
Pfam:PF03725 SUPFAM:SSF55666 RefSeq:XP_722654.1 RefSeq:XP_722799.1
ProteinModelPortal:Q5AMR4 STRING:Q5AMR4 GeneID:3635514
GeneID:3635642 KEGG:cal:CaO19.12051 KEGG:cal:CaO19.4582
Uniprot:Q5AMR4
Length = 240
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 58/217 (26%), Positives = 107/217 (49%)
Query: 37 LRPDSRGFHQCRPAFFRTGA-VNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGR 94
LR D R +++ R R NS+ GS+Y E GNTKV+ +V GP E + ++ +S
Sbjct: 9 LRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVMCTVQGPIEPALRSQQHSERAN 68
Query: 95 LNCNVSYTTFATPVRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ N++ +F+T R + S ++ + + L K E ++++ +P+T + + VL
Sbjct: 69 IEVNLNIASFSTFERKKRSRNERRLVELKTTLEKTFEESVMINLYPRTNIVINVQVLCQD 128
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
G L VI+ ++AL DAGI MYD V+ VS + L+D V E + L + +
Sbjct: 129 GGMLAAVINSITLALIDAGISMYDYVSGVSCGLYDQTPLLD-VNNLEEHDMSCLTVGVIG 187
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIM 247
++ + + + + + + S K+ ++M
Sbjct: 188 KSEKLALMLLEDKMPLDRLESVLSIGIAGSHKIRELM 224
>SGD|S000003427 [details] [associations]
symbol:SKI6 "Exosome non-catalytic core component"
species:4932 "Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0070481 "nuclear-transcribed mRNA catabolic
process, non-stop decay" evidence=IC] [GO:0071039 "nuclear
polyadenylation-dependent CUT catabolic process" evidence=IMP]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=IDA] [GO:0016075 "rRNA catabolic process"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0000467 "exonucleolytic
trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0034475 "U4 snRNA 3'-end processing" evidence=IGI;IMP]
[GO:0034427 "nuclear-transcribed mRNA catabolic process,
exonucleolytic, 3'-5'" evidence=IMP] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=IGI;IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0071051 "polyadenylation-dependent snoRNA 3'-end
processing" evidence=IMP] [GO:0071028 "nuclear mRNA surveillance"
evidence=IGI;IMP] [GO:0005634 "nucleus" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IC]
[GO:0034473 "U1 snRNA 3'-end processing" evidence=IGI;IMP]
[GO:0034476 "U5 snRNA 3'-end processing" evidence=IGI;IMP]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=IDA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IDA]
[GO:0070651 "nonfunctional rRNA decay" evidence=IC]
InterPro:IPR001247 SGD:S000003427 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0071039
GO:GO:0071038 InterPro:IPR020568 SUPFAM:SSF54211 RefSeq:NP_011711.3
GeneID:853109 KEGG:sce:YGR195W KO:K11600 GO:GO:0000176
GO:GO:0000177 GO:GO:0000467 GO:GO:0070651 GO:GO:0071042
GO:GO:0070478 GO:GO:0070481 GO:GO:0071051 KO:K03233 eggNOG:COG0689
GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515 OMA:DVFIEVL
GO:GO:0071028 Pfam:PF03725 SUPFAM:SSF55666 EMBL:X82775 EMBL:Z72981
GO:GO:0034475 GO:GO:0034476 GO:GO:0034473 OrthoDB:EOG45MRFG
EMBL:Z72980 EMBL:AY558509 PIR:S59180 RefSeq:NP_011717.4 PDB:2WP8
PDBsum:2WP8 ProteinModelPortal:P46948 SMR:P46948 DIP:DIP-2083N
IntAct:P46948 MINT:MINT-555587 STRING:P46948 PaxDb:P46948
EnsemblFungi:YGR195W GeneID:853115 KEGG:sce:YGR201C CYGD:YGR195w
EvolutionaryTrace:P46948 NextBio:973121 Genevestigator:P46948
GermOnline:YGR195W Uniprot:P46948
Length = 246
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 56/172 (32%), Positives = 93/172 (54%)
Query: 37 LRPDSRGFHQCR--PAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
LR D R +++ R + T ++A GS+Y E GN K+I V GP+E + K+ M ++
Sbjct: 12 LRLDGRRWNELRRFESSINTHP-HAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKA 70
Query: 94 RLNCNVSYTTFATPVRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVL 147
LN +V+ T F+ R + S HK + + L + E ++L +P+T +D+ VL
Sbjct: 71 LLNVSVNITKFSKFERSKSS-HKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVL 129
Query: 148 ESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDP-VLEEES 198
E G + +I+ ++AL DAGI M+D ++ +SV L+D LEE +
Sbjct: 130 EQDGGIMGSLINGITLALIDAGISMFDYISGISVGLYDTTPLLDTNSLEENA 181
>GENEDB_PFALCIPARUM|PFB0415c [details] [associations]
symbol:PFB0415c "hypothetical protein"
species:5833 "Plasmodium falciparum" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001247 Pfam:PF01138 InterPro:IPR020568
SUPFAM:SSF54211 EMBL:AE001362 RefSeq:XP_001349602.2
ProteinModelPortal:O96177 EnsemblProtists:PFB0415c:mRNA
GeneID:812684 KEGG:pfa:PFB0415c EuPathDB:PlasmoDB:PF3D7_0209200
HOGENOM:HOG000284275 ProtClustDB:CLSZ2446608 Uniprot:O96177
Length = 275
Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 48/186 (25%), Positives = 91/186 (48%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R ++R ++ R F + G + S + GNTK++ +V+GP K YS G++
Sbjct: 32 RINNRKNNEIRDMFIKLGEDENFGSSCFYSLGNTKILTTVYGPNPDSKYATYSK-GKVFL 90
Query: 98 NVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVV 157
+V T D S+L + + I+LE +P+ ++ + L+++ G L
Sbjct: 91 DVKSLNINTIGASDRQRDDDIKSLLIECISNIILLEKYPQCSIKIKCLIIQDDGGCLSAT 150
Query: 158 ISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQ---DGSLMIACMPSRYE 214
++C S+AL A I M D++ S+++ N +I PV ++ + DG + S+YE
Sbjct: 151 LTCISLALIKAQIQMKDIIISINI-----NSIICPVTKKMYHLVDLDG-MEEKYYQSKYE 204
Query: 215 VTQLTV 220
+ +T+
Sbjct: 205 MNSITL 210
>UNIPROTKB|O96177 [details] [associations]
symbol:PFB0415c "3' exoribonuclease, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001247 Pfam:PF01138 InterPro:IPR020568
SUPFAM:SSF54211 EMBL:AE001362 RefSeq:XP_001349602.2
ProteinModelPortal:O96177 EnsemblProtists:PFB0415c:mRNA
GeneID:812684 KEGG:pfa:PFB0415c EuPathDB:PlasmoDB:PF3D7_0209200
HOGENOM:HOG000284275 ProtClustDB:CLSZ2446608 Uniprot:O96177
Length = 275
Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 48/186 (25%), Positives = 91/186 (48%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R ++R ++ R F + G + S + GNTK++ +V+GP K YS G++
Sbjct: 32 RINNRKNNEIRDMFIKLGEDENFGSSCFYSLGNTKILTTVYGPNPDSKYATYSK-GKVFL 90
Query: 98 NVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVV 157
+V T D S+L + + I+LE +P+ ++ + L+++ G L
Sbjct: 91 DVKSLNINTIGASDRQRDDDIKSLLIECISNIILLEKYPQCSIKIKCLIIQDDGGCLSAT 150
Query: 158 ISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQ---DGSLMIACMPSRYE 214
++C S+AL A I M D++ S+++ N +I PV ++ + DG + S+YE
Sbjct: 151 LTCISLALIKAQIQMKDIIISINI-----NSIICPVTKKMYHLVDLDG-MEEKYYQSKYE 204
Query: 215 VTQLTV 220
+ +T+
Sbjct: 205 MNSITL 210
>POMBASE|SPAC3G9.10c [details] [associations]
symbol:rrp41 "exosomal 3'-to-5' phosphorolytic
exoribonuclease Rrp41 (predicted)" species:4896
"Schizosaccharomyces pombe" [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=ISO] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=ISO] [GO:0000177 "cytoplasmic exosome (RNase
complex)" evidence=ISO] [GO:0000467 "exonucleolytic trimming to
generate mature 3'-end of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005829
"cytosol" evidence=IDA] [GO:0034661 "ncRNA catabolic process"
evidence=ISO] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0070478 "nuclear-transcribed mRNA catabolic process, 3'-5'
exonucleolytic nonsense-mediated decay" evidence=ISO] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=ISO] [GO:0070651 "nonfunctional rRNA decay" evidence=ISO]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=ISO] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=ISO]
[GO:0071042 "nuclear polyadenylation-dependent mRNA catabolic
process" evidence=ISO] InterPro:IPR001247 InterPro:IPR015847
PomBase:SPAC3G9.10c Pfam:PF01138 GO:GO:0005829 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0044732 GO:GO:0003723
GO:GO:0071035 GO:GO:0071038 InterPro:IPR020568 SUPFAM:SSF54211
KO:K11600 GO:GO:0000176 GO:GO:0000175 GO:GO:0000177 GO:GO:0000467
GO:GO:0070651 GO:GO:0071042 GO:GO:0070478 GO:GO:0070481
eggNOG:COG0689 HOGENOM:HOG000229515 Pfam:PF03725 SUPFAM:SSF55666
EMBL:D89141 PIR:T11646 PIR:T11740 RefSeq:NP_594082.1
ProteinModelPortal:O42872 IntAct:O42872 STRING:O42872
EnsemblFungi:SPAC3G9.10c.1 GeneID:2543451 KEGG:spo:SPAC3G9.10c
OMA:AIMPKTG OrthoDB:EOG45MRFG NextBio:20804464 Uniprot:O42872
Length = 242
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 59/227 (25%), Positives = 110/227 (48%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNI 92
++ LR D R + + R R G S +GSA+ E GNTKV+ V GP E K+ ++
Sbjct: 9 LEGLRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSKARADR 68
Query: 93 GRLNCNVSYTTFAT-PVRGQ-GSDHK-DFSSM-LHKALEGAIILETFPKTTVDVFALVLE 148
+N ++ +F+T V+ + SD + + L E I E +P++ + V+ VL+
Sbjct: 69 TFVNVEINIASFSTIDVKKRFKSDRRIQLQCLALQNTFEEIIQTELYPRSQISVYLHVLQ 128
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
G+ + I+ ++AL DAGI + D V + + ++L+D EES L +A
Sbjct: 129 DDGAVMASCINATTLALIDAGIPVKDFVCCSTAGIVESDMLLDLNSLEESALSW-LTVAV 187
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAA 255
+ + +V + + + M + + S + M+S ++++A
Sbjct: 188 LGNIKKVVYMQLETSMHLDYLESVMNMAIAGSEHIYNTMQSAVRQSA 234
>TAIR|locus:2075351 [details] [associations]
symbol:AT3G46210 "AT3G46210" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0006396 "RNA processing"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0006626 "protein targeting to mitochondrion" evidence=RCA]
[GO:0051604 "protein maturation" evidence=RCA] InterPro:IPR001247
Pfam:PF01138 EMBL:CP002686 GenomeReviews:BA000014_GR
InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689
HOGENOM:HOG000229515 KO:K12590 OMA:VRETCEA ProtClustDB:CLSN2684812
EMBL:AL355775 EMBL:BT003125 EMBL:AK228171 EMBL:AK317261
EMBL:AK317537 IPI:IPI00521571 PIR:T49262 RefSeq:NP_001030817.1
RefSeq:NP_001030818.1 RefSeq:NP_001030819.1 RefSeq:NP_001078250.1
RefSeq:NP_001190019.1 RefSeq:NP_190207.1 UniGene:At.43331
ProteinModelPortal:Q9LX74 SMR:Q9LX74 IntAct:Q9LX74 STRING:Q9LX74
PaxDb:Q9LX74 PRIDE:Q9LX74 EnsemblPlants:AT3G46210.1
EnsemblPlants:AT3G46210.2 EnsemblPlants:AT3G46210.3
EnsemblPlants:AT3G46210.4 EnsemblPlants:AT3G46210.5
EnsemblPlants:AT3G46210.6 GeneID:823766 KEGG:ath:AT3G46210
TAIR:At3g46210 InParanoid:Q9LX74 PhylomeDB:Q9LX74
Genevestigator:Q9LX74 Uniprot:Q9LX74
Length = 239
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 54/164 (32%), Positives = 79/164 (48%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R +Q RP ++ GSA G+TKV+ +V+GP+ K N + C
Sbjct: 5 REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKN--ENAEKA-C 61
Query: 98 NVSYTTFATPVRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPV 156
+ P GQ G K++ +L + ++ +L P TT V V+ GS LP
Sbjct: 62 ---FEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPC 118
Query: 157 VISCASVALADAGIMMYDLVASVSVSCLGKN--LLIDP-VLEEE 197
I+ A AL DAGI M L ++ CL +N L++DP LEE+
Sbjct: 119 AINAACAALVDAGIPMKHLAVAICC-CLAENGYLVLDPNKLEEK 161
>GENEDB_PFALCIPARUM|PF14_0256 [details] [associations]
symbol:PF14_0256 "exosome complex exonuclease
rrp41, putative" species:5833 "Plasmodium falciparum" [GO:0000178
"exosome (RNase complex)" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 EMBL:AE014187 GO:GO:0004527 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364 KO:K11600
HOGENOM:HOG000229515 OMA:DVFIEVL SUPFAM:SSF55666
RefSeq:XP_001348430.1 ProteinModelPortal:Q8ILI7
EnsemblProtists:PF14_0256:mRNA GeneID:811838 KEGG:pfa:PF14_0256
EuPathDB:PlasmoDB:PF3D7_1427800 ProtClustDB:CLSZ2432000
Uniprot:Q8ILI7
Length = 246
Score = 172 (65.6 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 58/226 (25%), Positives = 98/226 (43%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNS---ASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
R D R +CR G N G ++ E GNTK+ + GP E ++
Sbjct: 13 RIDGRKNDECRLIKISLGNGNELIDVDGFSFFEIGNTKLFAYIQGPNEYRRP---DEKCL 69
Query: 95 LNCNVSYTTF--ATPVRGQGSDH--KDFSSMLHKALEGAIILETFPKTTVDVFALVLE-S 149
+ CNV + F R + D+ ++ SS + I+L+ + + +++F ++E
Sbjct: 70 VKCNVFLSPFNILEKKRKKSKDNVTREISSYIRNICNHIILLDLYKNSEINIFLYIIERD 129
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACM 209
GG V +C +AL DAGI + +++ SV L N+++D E + L +A
Sbjct: 130 GGLKAAAVNTCI-LALIDAGIAIKYFISASSVLYLQNNIIVDGNQFEVNSGSPELTLAID 188
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAA 255
S + L E F ++ C A +G IM+ +KE A
Sbjct: 189 MSSNNIVLLEFDAEVPIDIFQSMLKTCAQACIHVGNIMKLSIKENA 234
>UNIPROTKB|Q8ILI7 [details] [associations]
symbol:PF14_0256 "Exosome complex exonuclease rrp41,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0000178
"exosome (RNase complex)" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 EMBL:AE014187 GO:GO:0004527 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364 KO:K11600
HOGENOM:HOG000229515 OMA:DVFIEVL SUPFAM:SSF55666
RefSeq:XP_001348430.1 ProteinModelPortal:Q8ILI7
EnsemblProtists:PF14_0256:mRNA GeneID:811838 KEGG:pfa:PF14_0256
EuPathDB:PlasmoDB:PF3D7_1427800 ProtClustDB:CLSZ2432000
Uniprot:Q8ILI7
Length = 246
Score = 172 (65.6 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 58/226 (25%), Positives = 98/226 (43%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNS---ASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
R D R +CR G N G ++ E GNTK+ + GP E ++
Sbjct: 13 RIDGRKNDECRLIKISLGNGNELIDVDGFSFFEIGNTKLFAYIQGPNEYRRP---DEKCL 69
Query: 95 LNCNVSYTTF--ATPVRGQGSDH--KDFSSMLHKALEGAIILETFPKTTVDVFALVLE-S 149
+ CNV + F R + D+ ++ SS + I+L+ + + +++F ++E
Sbjct: 70 VKCNVFLSPFNILEKKRKKSKDNVTREISSYIRNICNHIILLDLYKNSEINIFLYIIERD 129
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACM 209
GG V +C +AL DAGI + +++ SV L N+++D E + L +A
Sbjct: 130 GGLKAAAVNTCI-LALIDAGIAIKYFISASSVLYLQNNIIVDGNQFEVNSGSPELTLAID 188
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAA 255
S + L E F ++ C A +G IM+ +KE A
Sbjct: 189 MSSNNIVLLEFDAEVPIDIFQSMLKTCAQACIHVGNIMKLSIKENA 234
>UNIPROTKB|Q84T68 [details] [associations]
symbol:RRP46 "Exosome complex exonuclease RRP46 homolog"
species:39947 "Oryza sativa Japonica Group" [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0004536
"deoxyribonuclease activity" evidence=IDA] [GO:0004540
"ribonuclease activity" evidence=IDA] [GO:0042802 "identical
protein binding" evidence=IPI] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005730 GO:GO:0003727
EMBL:DP000009 EMBL:AP008209 GO:GO:0003690 GO:GO:0004527
GO:GO:0000178 GO:GO:0004540 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0004536 GO:GO:0006364 eggNOG:COG0689 SUPFAM:SSF55666
KO:K12590 EMBL:AC120506 EMBL:AK069107 RefSeq:NP_001051936.1
UniGene:Os.47503 PDB:3HKM PDBsum:3HKM ProteinModelPortal:Q84T68
STRING:Q84T68 EnsemblPlants:LOC_Os03g63720.1 GeneID:4334824
KEGG:dosa:Os03t0854200-01 KEGG:osa:4334824 Gramene:Q84T68
OMA:EKACIEV ProtClustDB:CLSN2684812 EvolutionaryTrace:Q84T68
Uniprot:Q84T68
Length = 238
Score = 146 (56.5 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 46/162 (28%), Positives = 73/162 (45%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R +Q RP ++ A GSA G+T V+ +V+GP+ + N + +
Sbjct: 5 RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKG--ENPEKASI 62
Query: 98 NVSYTTFATPVRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPV 156
V + P+ GQ G K++ L + L+ +L P TT V V+ + GS LP
Sbjct: 63 EVVWK----PMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPC 118
Query: 157 VISCASVALADAGIMMYDLVASVSVSCLGKN-LLIDPVLEEE 197
I+ AL AGI + L ++ L +++D EE
Sbjct: 119 AINACCAALVFAGIPLKHLAVAIGCGVLEDGEVILDTNKAEE 160
Score = 41 (19.5 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 215 VTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL-KEAASD 257
+T +T G S + ++ L AS+++ MR+ L K+A D
Sbjct: 195 ITSIT-HGVMSEEDYFSCIERGLAASSRISDFMRTTLQKQAPGD 237
>ASPGD|ASPL0000041827 [details] [associations]
symbol:AN2153 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA]
InterPro:IPR001247 Pfam:PF01138 EMBL:BN001307 InterPro:IPR020568
SUPFAM:SSF54211 eggNOG:COG0689 KO:K12587 OrthoDB:EOG415KPS
EMBL:AACD01000034 RefSeq:XP_659757.1 ProteinModelPortal:Q5BBC7
STRING:Q5BBC7 EnsemblFungi:CADANIAT00008831 GeneID:2875444
KEGG:ani:AN2153.2 HOGENOM:HOG000167506 OMA:NVLAGCI Uniprot:Q5BBC7
Length = 324
Score = 89 (36.4 bits), Expect = 8.3e-10, Sum P(3) = 8.3e-10
Identities = 25/81 (30%), Positives = 40/81 (49%)
Query: 72 KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVR-GQGSD--HKDFSSMLHKALEG 128
K+ +V GP+ ++ +S L +V Y FA R G D +D L AL G
Sbjct: 89 KLACTVHGPKPLPRSATFSPNLVLTTHVKYAPFAARKRKGHIRDASERDLGVHLETALRG 148
Query: 129 AIILETFPKTTVDVFALVLES 149
I+ E +PK+ +D+ +LE+
Sbjct: 149 VIVAERWPKSGLDITITILEA 169
Score = 79 (32.9 bits), Expect = 8.3e-10, Sum P(3) = 8.3e-10
Identities = 23/56 (41%), Positives = 29/56 (51%)
Query: 20 PTRKTRPPIFSGSDVDWL------RPD-SRGFHQCRPAFFRTGAVNSASGSAYAEF 68
P TRPPIF+ S RP R ++ R F +TG + SASGS+Y EF
Sbjct: 10 PPGGTRPPIFASSIKPTATATAAERPQRQRQPNELRKIFLKTGLIPSASGSSYLEF 65
Score = 73 (30.8 bits), Expect = 8.3e-10, Sum P(3) = 8.3e-10
Identities = 34/116 (29%), Positives = 53/116 (45%)
Query: 158 ISCASVALADAGIMMYDLVAS-VSVSCLGK------NLLIDPVLEEESYQDGSLMIAC-- 208
I+ AS A+ADA I DLVA V+ + K N +L+ + + S++ AC
Sbjct: 196 ITAASAAIADARIDCLDLVAGGVAAVVVDKLADGNGNSCARLMLDTDPAEHQSILSACVV 255
Query: 209 --MPSRYEVTQLTVTGEWS-----TPHFNEAMQLCLDASAKLGKIMRSCLKEAASD 257
MP R E+T+L + G+ S T N + +D + + S L EA +
Sbjct: 256 AYMPGRDEITELWLKGDNSKAAVGTTDQNLSHDALIDGAVVAARGAHSVLAEAVRE 311
>CGD|CAL0003194 [details] [associations]
symbol:orf19.168 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0000177 "cytoplasmic exosome (RNase
complex)" evidence=IEA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IEA] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=IEA]
[GO:0034475 "U4 snRNA 3'-end processing" evidence=IEA] [GO:0071035
"nuclear polyadenylation-dependent rRNA catabolic process"
evidence=IEA] [GO:0071039 "nuclear polyadenylation-dependent CUT
catabolic process" evidence=IEA] [GO:0071028 "nuclear mRNA
surveillance" evidence=IEA] [GO:0071051 "polyadenylation-dependent
snoRNA 3'-end processing" evidence=IEA] [GO:0000467 "exonucleolytic
trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR001247 CGD:CAL0003194 Pfam:PF01138 InterPro:IPR020568
SUPFAM:SSF54211 EMBL:AACQ01000245 RefSeq:XP_710705.1 GeneID:3647689
KEGG:cal:CaO19.168 Uniprot:Q59LV6
Length = 291
Score = 113 (44.8 bits), Expect = 9.6e-10, Sum P(2) = 9.6e-10
Identities = 45/157 (28%), Positives = 81/157 (51%)
Query: 114 DHKDFSSMLHKALEGAIILETFPKTTVDVFALVL----ESGGSD-----LPVVISCASVA 164
+HK SS L + ++ILE +PK+T+D+ ++ E GG L + C S+A
Sbjct: 129 EHK-LSSYLETCVLSSLILEKYPKSTIDIQVSIISIDKEIGGGHSLLWLLQWITCCCSLA 187
Query: 165 LADAGIMMYDLVAS--VSVSCLGKNLLIDPVLEEESYQDG-SLMIACMPSRY-EVTQLTV 220
L D+GI M D+++S V ++ GK ++I ++ S +DG +++ M + E+ +
Sbjct: 188 LVDSGIEMKDIISSGQVRLTKSGK-IIIGGNSDKTSTEDGIDGLVSFMNLKNDEIVGIWF 246
Query: 221 TGEWSTPH-----FNEA-MQLCLDASAKLGKIMRSCL 251
GE + NE+ M+ + K+ KI+R+ L
Sbjct: 247 EGEGDDNNNEDSLLNESNMEKLIIECNKMSKIIRANL 283
Score = 88 (36.0 bits), Expect = 9.6e-10, Sum P(2) = 9.6e-10
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 49 PAFF-RTGAVNSASGSAYAEFGNTKVIVSVFGPR 81
P+FF + +++A+GSAY E NT + VS+FGPR
Sbjct: 39 PSFFLKHSIIDNANGSAYLEINNTIIEVSIFGPR 72
>WB|WBGene00000798 [details] [associations]
symbol:crn-5 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0006309 "apoptotic DNA fragmentation"
evidence=IMP] [GO:0006396 "RNA processing" evidence=IMP]
[GO:0000178 "exosome (RNase complex)" evidence=IMP] [GO:0008408
"3'-5' exonuclease activity" evidence=ISS] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0032077 "positive regulation of
deoxyribonuclease activity" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0008340 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0006396 GO:GO:0003690
GO:GO:0000178 GO:GO:0006309 GO:GO:0008408 InterPro:IPR020568
SUPFAM:SSF54211 EMBL:Z49909 SUPFAM:SSF55666 KO:K12590
GeneTree:ENSGT00550000075002 GO:GO:0032077 EMBL:AY303579 PIR:T19247
RefSeq:NP_496284.1 UniGene:Cel.23323 ProteinModelPortal:G5EG59
SMR:G5EG59 IntAct:G5EG59 EnsemblMetazoa:C14A4.5 GeneID:174634
KEGG:cel:CELE_C14A4.5 CTD:174634 WormBase:C14A4.5 OMA:CGDNKFN
EvolutionaryTrace:G5EG59 NextBio:884842 Uniprot:G5EG59
Length = 214
Score = 147 (56.8 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 54/209 (25%), Positives = 90/209 (43%)
Query: 57 VNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHK 116
+ +A GSA G T + S GP + + + ++SY R D+K
Sbjct: 15 LKNADGSACFSQGATCIWASCSGPGDVHASKASDEA--MTLDISY-------RANCGDNK 65
Query: 117 D--FSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYD 174
++++H L AI LE FP TT+ V ++ GS V I+ A AL D G+
Sbjct: 66 FNVLNNIIHSTLSNAINLELFPHTTISVTVHGIQDDGSMGAVAINGACFALLDNGMPFET 125
Query: 175 LVASVSVSCLGKNLLIDPVLEEESYQDGSLMIA-CMPS--RYEVTQLTVTGEWSTPHFNE 231
+ V + + L+IDP ++E+ G ++ + C S EV + G W
Sbjct: 126 VFCGVLIVRVKDELIIDPTAKQEAASTGRVLFSVCKGSDGHPEVCAMDAIGHWDFIQLEA 185
Query: 232 AMQLCLDASAKLGKIMRSCLKEAAS-DEQ 259
A L +++ + ++ +K S DEQ
Sbjct: 186 AWSLAQPSASAIFDFYKTVMKRKLSVDEQ 214
>ASPGD|ASPL0000013004 [details] [associations]
symbol:AN3812 species:162425 "Emericella nidulans"
[GO:0034473 "U1 snRNA 3'-end processing" evidence=IEA] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=IEA] [GO:0016075 "rRNA catabolic
process" evidence=IEA] [GO:0071028 "nuclear mRNA surveillance"
evidence=IEA] [GO:0034476 "U5 snRNA 3'-end processing"
evidence=IEA] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0071039 "nuclear
polyadenylation-dependent CUT catabolic process" evidence=IEA]
[GO:0071051 "polyadenylation-dependent snoRNA 3'-end processing"
evidence=IEA] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IEA] [GO:0071038 "nuclear polyadenylation-dependent tRNA
catabolic process" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IEA] [GO:0000177 "cytoplasmic exosome (RNase complex)"
evidence=IEA] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IEA] InterPro:IPR001247 Pfam:PF01138 EMBL:BN001302
EMBL:AACD01000061 GO:GO:0004519 InterPro:IPR020568 SUPFAM:SSF54211
KO:K11600 eggNOG:COG0689 HOGENOM:HOG000229515 RefSeq:XP_661416.1
ProteinModelPortal:Q5B6L8 STRING:Q5B6L8
EnsemblFungi:CADANIAT00004900 GeneID:2873233 KEGG:ani:AN3812.2
OMA:GCKQVRE OrthoDB:EOG4H1F52 Uniprot:Q5B6L8
Length = 265
Score = 151 (58.2 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 53/195 (27%), Positives = 90/195 (46%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKA-----MMYSN 91
LR D R +++ R + ++SGS+Y GNT ++ SV GP E ++ S+
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLAMGNTTILCSVHGPAEGRRGDATGGSAGSS 73
Query: 92 IGRLNCNVSYTTFATPVRGQ---GSDHKD--FSSMLHKALEGAIILETFPKTTVDVFALV 146
+ +V+ FA+ R + GSD + +S L A + + +P +T+ + V
Sbjct: 74 GAVVEVDVNIAGFASVDRKRRAGGSDRQSGRIASTLRSAFQSHLHTYLYPHSTISIHVSV 133
Query: 147 LESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGK-NLLIDPVLEEESYQDGSLM 205
L S GS L ++ ++AL DAGI M L+ + G + DP+ + L+
Sbjct: 134 LSSDGSVLAAAVNACTLALVDAGIPMPGLLCGCTAGMSGSASTPRDPMNDTLD----PLL 189
Query: 206 IACMPSRYEVTQLTV 220
+P E+ LTV
Sbjct: 190 DVSLPEEQELPFLTV 204
>UNIPROTKB|G4MSP2 [details] [associations]
symbol:MGG_07084 "3' exoribonuclease" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR001247 Pfam:PF01138 InterPro:IPR020568
SUPFAM:SSF54211 EMBL:CM001232 KO:K12587 RefSeq:XP_003715270.1
ProteinModelPortal:G4MSP2 EnsemblFungi:MGG_07084T0 GeneID:2682969
KEGG:mgr:MGG_07084 Uniprot:G4MSP2
Length = 302
Score = 107 (42.7 bits), Expect = 6.1e-09, Sum P(2) = 6.1e-09
Identities = 33/90 (36%), Positives = 48/90 (53%)
Query: 72 KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVR-G--QGSDHKDFSSMLHKALEG 128
K+ +V GPR ++ +S L+ ++ Y FAT R G + S +D S L AL G
Sbjct: 79 KLSCTVHGPRALPRSTPFSPHIILSTHIKYAPFATKQRRGYIRDSTERDLSVHLETALRG 138
Query: 129 AIILETFPKTTVDVFALVLESGGSD--LPV 156
II + +PK+ VDV V+E G D LP+
Sbjct: 139 VIIADRWPKSGVDVIVSVIE-GDQDRRLPL 167
Score = 90 (36.7 bits), Expect = 6.8e-07, Sum P(2) = 6.8e-07
Identities = 41/129 (31%), Positives = 55/129 (42%)
Query: 20 PTRKTRPPIFSGS---DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEF-------- 68
P T PP+F D R SR + R F +TG SASGSAY E
Sbjct: 10 PVGTTLPPVFFDEPIPDKPGPRTRSRPPNAIRKIFLKTGITPSASGSAYLEIENPVVSGK 69
Query: 69 -GNT-----KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVR-GQGSDHKDFSSM 121
G T K+ +V GPR ++ +S L+ ++ Y FAT R G D +
Sbjct: 70 EGETSTSGLKLSCTVHGPRALPRSTPFSPHIILSTHIKYAPFATKQRRGYIRDSTERDLS 129
Query: 122 LHKALEGAI 130
+H LE A+
Sbjct: 130 VH--LETAL 136
Score = 88 (36.0 bits), Expect = 6.1e-09, Sum P(2) = 6.1e-09
Identities = 37/126 (29%), Positives = 59/126 (46%)
Query: 148 ESGGSDLPVVISC---ASVALADAGIMMYDLVASVSVSCL------------GKNLLIDP 192
E S + V+ C AS ALADAGI D+VA V+ L G ++++DP
Sbjct: 174 EEAWSTMSVLSGCITVASAALADAGIDCVDMVAG-GVAALVRDDSDGAKSVEGGSIVVDP 232
Query: 193 VLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQL-CLDASAKLGKIMRSCL 251
V E + +A +P+R EVT L G+ + + A+ L ++ S + KI L
Sbjct: 233 VPAEHDKIVAACCVAYLPNRDEVTNLWFKGDAAAS--DSALYLNIVNNSVRASKIANRVL 290
Query: 252 KEAASD 257
++ +
Sbjct: 291 VDSLKE 296
Score = 38 (18.4 bits), Expect = 0.00080, Sum P(2) = 0.00080
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 164 ALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQD 201
A +D+ + + + SV S + +L+D + E QD
Sbjct: 265 AASDSALYLNIVNNSVRASKIANRVLVDSLKETLQQQD 302
>UNIPROTKB|Q95Z13 [details] [associations]
symbol:RRP41A "Rrp41p homologue" species:5691 "Trypanosoma
brucei" [GO:0000178 "exosome (RNase complex)" evidence=IDA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 SUPFAM:SSF55666 EMBL:AJ308997
ProteinModelPortal:Q95Z13 IntAct:Q95Z13 STRING:Q95Z13
EuPathDB:TriTrypDB:Tb427.10.7450 EuPathDB:TriTrypDB:Tb927.10.7450
Uniprot:Q95Z13
Length = 252
Score = 146 (56.5 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 46/176 (26%), Positives = 79/176 (44%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAM--MYSNIGR 94
LR D R ++ R G ++ G G + V +V+GPRE + Y+ +
Sbjct: 13 LRLDGRRQNEPRRLALEFGKISGCDGCCTVVSGLSHVCATVYGPREVSNRLDGKYNEV-T 71
Query: 95 LNCNVSYTTFATPVRGQGSDH----KDFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ C+V FA R + + +D S+ + ++L +P + + + VL+
Sbjct: 72 ITCDVVVAAFAGERRREQQRYSRLSEDISASVLDVARSVVLLSQYPNSQIHICIEVLKQD 131
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMI 206
GSD I+ A +AL DA I M D+V + +V + ++D EE Q S+ I
Sbjct: 132 GSDKAACINAACLALIDASIAMRDVVYTQTVGLIEGFDVVDLTTEEIHSQCPSICI 187
>MGI|MGI:107889 [details] [associations]
symbol:Exosc5 "exosome component 5" species:10090 "Mus
musculus" [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0006401 "RNA catabolic process" evidence=IMP]
[GO:0035327 "transcriptionally active chromatin" evidence=ISO]
[GO:0043928 "exonucleolytic nuclear-transcribed mRNA catabolic
process involved in deadenylation-dependent decay" evidence=ISO]
[GO:0045006 "DNA deamination" evidence=ISO] [GO:0051607 "defense
response to virus" evidence=ISO] InterPro:IPR001247
InterPro:IPR015847 MGI:MGI:107889 Pfam:PF01138 GO:GO:0005737
GO:GO:0005730 GO:GO:0051607 GO:GO:0003723 GO:GO:0006401
GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0035327
GO:GO:0006364 GO:GO:0043928 GO:GO:0045006 eggNOG:COG0689
HOGENOM:HOG000229515 Pfam:PF03725 SUPFAM:SSF55666 CTD:56915
HOVERGEN:HBG051520 KO:K12590 OMA:VRETCEA OrthoDB:EOG4PZJ7M
EMBL:AK007372 EMBL:AK006475 EMBL:BC034358 IPI:IPI00133532
RefSeq:NP_613052.1 UniGene:Mm.207484 UniGene:Mm.27853
ProteinModelPortal:Q9CRA8 SMR:Q9CRA8 IntAct:Q9CRA8 STRING:Q9CRA8
PhosphoSite:Q9CRA8 PaxDb:Q9CRA8 PRIDE:Q9CRA8
Ensembl:ENSMUST00000079634 GeneID:27998 KEGG:mmu:27998
UCSC:uc009fti.2 GeneTree:ENSGT00550000075002 InParanoid:Q9CRA8
NextBio:306496 Bgee:Q9CRA8 CleanEx:MM_EXOSC5 Genevestigator:Q9CRA8
GermOnline:ENSMUSG00000061286 Uniprot:Q9CRA8
Length = 235
Score = 141 (54.7 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 48/196 (24%), Positives = 80/196 (40%)
Query: 62 GSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSSM 121
GSA G+T V+ V+GP E K + N L + P G K +
Sbjct: 43 GSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEV-ILRPKIGLP----GVAEKSRERL 97
Query: 122 LHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSV 181
+ E ++ P+T++ V V+ GS L ++ A +AL DAG+ M L V+
Sbjct: 98 VRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVTC 157
Query: 182 SCLGK-NLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDAS 240
+ NL++DP ++E L A + ++ T G +S + + AS
Sbjct: 158 ALDSDGNLVLDPTTKQEKEARAILTFALDSAEQKLLMSTTKGLYSDAELQQCLAAAQAAS 217
Query: 241 AKLGKIMRSCLKEAAS 256
+ + R L+ S
Sbjct: 218 QHIFRFYRESLQRRYS 233
>POMBASE|SPBC115.01c [details] [associations]
symbol:rrp46 "exosome subunit Rrp46 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISO] [GO:0000177 "cytoplasmic
exosome (RNase complex)" evidence=ISO] [GO:0000467 "exonucleolytic
trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=ISM] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005829
"cytosol" evidence=IDA] [GO:0034661 "ncRNA catabolic process"
evidence=ISO] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay"
evidence=ISO] [GO:0070481 "nuclear-transcribed mRNA catabolic
process, non-stop decay" evidence=ISO] [GO:0070651 "nonfunctional
rRNA decay" evidence=ISO] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=ISO]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=ISO] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=ISO]
InterPro:IPR001247 PomBase:SPBC115.01c Pfam:PF01138 GO:GO:0005829
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
GO:GO:0071035 GO:GO:0071038 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0000176 GO:GO:0000175 GO:GO:0000177 GO:GO:0000467
GO:GO:0070651 GO:GO:0071042 GO:GO:0070478 GO:GO:0070481
eggNOG:COG0689 KO:K12590 PIR:T39298 RefSeq:NP_595260.1
ProteinModelPortal:O42894 STRING:O42894 EnsemblFungi:SPBC115.01c.1
GeneID:2539660 KEGG:spo:SPBC115.01c OMA:YPRQLIQ OrthoDB:EOG4HDX3Z
NextBio:20800814 Uniprot:O42894
Length = 226
Score = 140 (54.3 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 48/154 (31%), Positives = 76/154 (49%)
Query: 53 RTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQG 112
R G ++ + GS+ + G+ +VI V GP + K RLN + PV G
Sbjct: 3 RIGILSRSDGSSEWKQGSARVICGVNGPIDVK-----IRDERLN-KATVEVLVQPVSGVA 56
Query: 113 SD-HKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSD-LPVVISCASVALADAGI 170
K SS + LE AI L T+P+T + V ++E G+D L VI+ A +AL DAGI
Sbjct: 57 ETLEKMISSRIVGILEDAIFLNTYPRTLIQVSIQIIEEDGTDTLAAVINGAVLALLDAGI 116
Query: 171 MMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSL 204
+ + +++ C KN + ++E DG++
Sbjct: 117 SLKYIPCAIN--CHWKN----KITQDEPDVDGTI 144
>ZFIN|ZDB-GENE-060503-675 [details] [associations]
symbol:exosc5 "exosome component 5" species:7955
"Danio rerio" [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
ZFIN:ZDB-GENE-060503-675 InterPro:IPR020568 SUPFAM:SSF54211
Pfam:PF03725 SUPFAM:SSF55666 GeneTree:ENSGT00550000075002
EMBL:BX649594 IPI:IPI00483802 Ensembl:ENSDART00000125931
ArrayExpress:F1REL3 Bgee:F1REL3 Uniprot:F1REL3
Length = 243
Score = 139 (54.0 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 46/199 (23%), Positives = 85/199 (42%)
Query: 62 GSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSSM 121
GS+ G+T ++ V+GP E K + + + + VR + +
Sbjct: 50 GSSTFVQGDTSILAGVYGPAEVKVSKEIYDRATVEVLIQPKMGLPSVRERAREQ-----C 104
Query: 122 LHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSV 181
+ + E A++L P++++ V V+ GS L ++ A +AL DAG+ M L SV+
Sbjct: 105 VRETCEAALLLTLHPRSSLTVILQVVHDDGSLLSCCLNAACMALMDAGLPMSRLFCSVTC 164
Query: 182 SCLGKNLLI-DPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDAS 240
+ + +I DP +E L A + V + TG +S + + + AS
Sbjct: 165 AISKEGQIITDPTARQEKESRALLTFAIDSNERNVLMSSTTGSFSVQELQQCIAISQKAS 224
Query: 241 AKLGKIMRSCLKEAASDEQ 259
++ + R +K S Q
Sbjct: 225 EQIFQFYRDSVKRRYSKMQ 243
>UNIPROTKB|G4MM07 [details] [associations]
symbol:MGG_06785 "Exosome complex exonuclease RRP41"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0004527 EMBL:CM001231
InterPro:IPR020568 SUPFAM:SSF54211 KO:K11600 SUPFAM:SSF55666
RefSeq:XP_003709504.1 ProteinModelPortal:G4MM07
EnsemblFungi:MGG_06785T0 GeneID:2684958 KEGG:mgr:MGG_06785
Uniprot:G4MM07
Length = 280
Score = 95 (38.5 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 38/154 (24%), Positives = 68/154 (44%)
Query: 109 RGQGSDH-KDFSSMLHKALEGAIILETFPKTTVDVFAL-VLESGGSDLPVVISCASVALA 166
RG+G ++ + + AL + F +T+ F+L VL GS L +I+ A++A
Sbjct: 105 RGRGDKRIQELQATVSHALSATLHTHLFQHSTI-TFSLHVLSQDGSLLAALINAATLAAV 163
Query: 167 DAGIMMYDLVASVSV----SCLGKNLLIDPVLE---EESYQDGSLMIACMPSRYEVTQLT 219
DAGI M D V + S S + DP+L+ +E + L A + + V L+
Sbjct: 164 DAGIPMADYVVACSAGSTSSYAAADESADPLLDLNQQEETELPGLTAATLGATDRVVVLS 223
Query: 220 VTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
+ + +D ++ +I+ +KE
Sbjct: 224 CESRVQASRLEGMLAVAVDGCKQVREILDRVVKE 257
Score = 87 (35.7 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 27/81 (33%), Positives = 40/81 (49%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R +++ R + +A GS+Y E G+TKV+ V GP E+ G+
Sbjct: 13 LRVDGRRWNELRRCHAQIRTQAAADGSSYLEMGHTKVMCVVTGPSEAAP-------GQRR 65
Query: 97 CNVSYTTFATPVRGQGSDHKD 117
V+ T AT GQG+ K+
Sbjct: 66 TGVNITATATG-GGQGAQSKE 85
>UNIPROTKB|E1BAG2 [details] [associations]
symbol:EXOSC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045006 "DNA deamination" evidence=IEA] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=IEA] [GO:0035327
"transcriptionally active chromatin" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0051607 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0043928
GO:GO:0045006 Pfam:PF03725 SUPFAM:SSF55666 OMA:VRETCEA
GeneTree:ENSGT00550000075002 EMBL:DAAA02047109 IPI:IPI00710844
Ensembl:ENSBTAT00000021338 Uniprot:E1BAG2
Length = 235
Score = 134 (52.2 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 48/196 (24%), Positives = 79/196 (40%)
Query: 62 GSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSSM 121
GSA G+T V+ V+GP E K + N L + T P G K +
Sbjct: 43 GSASFLQGDTSVLAGVYGPAEVKISKEIFNKATLEVILRPKT-GLP----GVAEKSRERL 97
Query: 122 LHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSV 181
+ E ++ P+T++ V V+ GS L ++ A +AL DAG+ M L V+
Sbjct: 98 IRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVTC 157
Query: 182 SCLGKN-LLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDAS 240
+ L++DP ++E L A ++ T G +S + + AS
Sbjct: 158 ALDSDGTLMLDPTAKQEKEARAVLTFALDSVERKLLMSTTKGLYSDTELQQCLAAAQTAS 217
Query: 241 AKLGKIMRSCLKEAAS 256
+ + R L+ S
Sbjct: 218 THVFRFYRESLQRRYS 233
>RGD|1307861 [details] [associations]
symbol:Exosc5 "exosome component 5" species:10116 "Rattus
norvegicus" [GO:0000178 "exosome (RNase complex)" evidence=IEA;ISO]
[GO:0006401 "RNA catabolic process" evidence=ISO] [GO:0035327
"transcriptionally active chromatin" evidence=IEA;ISO] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=IEA;ISO] [GO:0045006
"DNA deamination" evidence=IEA;ISO] [GO:0051607 "defense response
to virus" evidence=IEA;ISO] [GO:0004532 "exoribonuclease activity"
evidence=ISO] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
RGD:1307861 GO:GO:0051607 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0043928 GO:GO:0045006
Pfam:PF03725 SUPFAM:SSF55666 CTD:56915 KO:K12590 OMA:VRETCEA
GeneTree:ENSGT00550000075002 IPI:IPI00201730 RefSeq:NP_001100963.2
UniGene:Rn.7400 Ensembl:ENSRNOT00000028026 GeneID:308441
KEGG:rno:308441 UCSC:RGD:1307861 NextBio:658885 ArrayExpress:F1LSX7
Uniprot:F1LSX7
Length = 235
Score = 134 (52.2 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 47/196 (23%), Positives = 79/196 (40%)
Query: 62 GSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSSM 121
GSA G+T V+ V+GP E K + N L + P G K +
Sbjct: 43 GSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEV-ILRPKIGLP----GVAEKSRERL 97
Query: 122 LHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSV 181
+ E ++ P+T++ V V+ GS L ++ A +AL DAG+ M L V+
Sbjct: 98 IRNTCEAVVLGALHPRTSITVVLQVVSDTGSLLACCLNAACMALVDAGVPMRALFCGVTC 157
Query: 182 SC-LGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDAS 240
+ NL++DP ++E L A + ++ G +S + + AS
Sbjct: 158 ALDPDGNLVLDPTTKQEKEARAILTFALDSAEQKLLMSATKGLYSDAELQQCLAAAQAAS 217
Query: 241 AKLGKIMRSCLKEAAS 256
+ + R L+ S
Sbjct: 218 QHIFRFYRESLQRRYS 233
>UNIPROTKB|Q9NQT4 [details] [associations]
symbol:EXOSC5 "Exosome complex component RRP46"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=NAS]
[GO:0006364 "rRNA processing" evidence=NAS] [GO:0005737 "cytoplasm"
evidence=NAS] [GO:0005730 "nucleolus" evidence=NAS] [GO:0000178
"exosome (RNase complex)" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=IMP;TAS] [GO:0045006 "DNA
deamination" evidence=IDA] [GO:0035327 "transcriptionally active
chromatin" evidence=IMP] [GO:0004532 "exoribonuclease activity"
evidence=IDA] [GO:0051607 "defense response to virus" evidence=IMP]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005829 GO:GO:0005730 GO:GO:0051607
GO:GO:0003723 GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0035327 EMBL:AC011462 GO:GO:0006364 GO:GO:0000175
GO:GO:0043928 PDB:2NN6 PDBsum:2NN6 GO:GO:0045006 eggNOG:COG0689
HOGENOM:HOG000229515 Pfam:PF03725 SUPFAM:SSF55666 EMBL:AF281134
EMBL:AF285785 EMBL:BC007742 EMBL:BC107696 IPI:IPI00644775
RefSeq:NP_064543.3 UniGene:Hs.283741 ProteinModelPortal:Q9NQT4
SMR:Q9NQT4 DIP:DIP-29846N IntAct:Q9NQT4 MINT:MINT-1479651
STRING:Q9NQT4 PhosphoSite:Q9NQT4 DMDM:14285757 PaxDb:Q9NQT4
PRIDE:Q9NQT4 DNASU:56915 Ensembl:ENST00000221233 GeneID:56915
KEGG:hsa:56915 UCSC:uc002oqo.3 CTD:56915 GeneCards:GC19M041892
HGNC:HGNC:24662 MIM:606492 neXtProt:NX_Q9NQT4 PharmGKB:PA134890468
HOVERGEN:HBG051520 InParanoid:Q9NQT4 KO:K12590 OMA:VRETCEA
OrthoDB:EOG4PZJ7M PhylomeDB:Q9NQT4 EvolutionaryTrace:Q9NQT4
GenomeRNAi:56915 NextBio:62403 Bgee:Q9NQT4 CleanEx:HS_EXOSC5
Genevestigator:Q9NQT4 GermOnline:ENSG00000077348 Uniprot:Q9NQT4
Length = 235
Score = 127 (49.8 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 49/197 (24%), Positives = 81/197 (41%)
Query: 62 GSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSSM 121
GSA G+T V+ V+GP E K + N L + P G K +
Sbjct: 43 GSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEV-ILRPKIGLP----GVAEKSRERL 97
Query: 122 LHKALEGAIILETF-PKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVS 180
+ E A++L T P+T++ V V+ GS L ++ A +AL DAG+ M L V+
Sbjct: 98 IRNTCE-AVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVA 156
Query: 181 VSCLGKN-LLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDA 239
+ L++DP ++E L A ++ + G +S + + A
Sbjct: 157 CALDSDGTLVLDPTSKQEKEARAVLTFALDSVERKLLMSSTKGLYSDTELQQCLAAAQAA 216
Query: 240 SAKLGKIMRSCLKEAAS 256
S + + R L+ S
Sbjct: 217 SQHVFRFYRESLQRRYS 233
>UNIPROTKB|Q8IEW0 [details] [associations]
symbol:EAP4 "Exosome-associated protein 4" species:5691
"Trypanosoma brucei" [GO:0000178 "exosome (RNase complex)"
evidence=IDA] InterPro:IPR001247 Pfam:PF01138 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 EMBL:AJ516002
ProteinModelPortal:Q8IEW0 IntAct:Q8IEW0 STRING:Q8IEW0
EuPathDB:TriTrypDB:Tb11.01.2820 EuPathDB:TriTrypDB:Tb427tmp.01.2820
Uniprot:Q8IEW0
Length = 227
Score = 121 (47.7 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 38/139 (27%), Positives = 62/139 (44%)
Query: 63 SAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATP----VRGQGSDHKDF 118
SA E G+T+V+ +V P++ S GR+ C V ++ A R + KD
Sbjct: 29 SACIEVGSTRVVCAVHHPQQLIDEYRGSR-GRVACTVRRSSRAQKHELAFRADVTPEKDL 87
Query: 119 SSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVAS 178
+ L +E A++LE P+ V+V +L G + + ALA G MYD ++
Sbjct: 88 ALALEGVVEQAVVLEKIPQLLVEVVVEILAEDGGLWDAIATGVCAALASGGFEMYDTFSA 147
Query: 179 VSVSCLGKNLLI-DPVLEE 196
+ L ++ DP E
Sbjct: 148 CGAALLPDGSIVTDPSATE 166
>UNIPROTKB|Q9KVD6 [details] [associations]
symbol:rph "Ribonuclease PH" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0004540 "ribonuclease
activity" evidence=ISS] [GO:0006401 "RNA catabolic process"
evidence=ISS] [GO:0008033 "tRNA processing" evidence=ISS]
InterPro:IPR002381 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006401
GO:GO:0008033 GO:GO:0000049 GO:GO:0004540 InterPro:IPR020568
SUPFAM:SSF54211 eggNOG:COG0689 Pfam:PF03725 SUPFAM:SSF55666
InterPro:IPR018336 PROSITE:PS01277 GO:GO:0004549 KO:K00989
OMA:MLPRATG ProtClustDB:PRK00173 GO:GO:0009022 HAMAP:MF_00564
TIGRFAMs:TIGR01966 PIR:D82350 RefSeq:NP_229867.2
ProteinModelPortal:Q9KVD6 SMR:Q9KVD6 DNASU:2614709 GeneID:2614709
KEGG:vch:VC0210 PATRIC:20079464 Uniprot:Q9KVD6
Length = 238
Score = 120 (47.3 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 43/140 (30%), Positives = 61/140 (43%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVF---G-PRESK---KAMMY 89
+RPD+R Q RP A GS EFGNTKV+ + G PR K K +
Sbjct: 1 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60
Query: 90 SNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L T G QG + ++ ++L + LE + + V V++
Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA 168
+ G I+ ASVALADA
Sbjct: 121 ADGGTRTASITGASVALADA 140
>TIGR_CMR|VC_0210 [details] [associations]
symbol:VC_0210 "ribonuclease PH" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0004540 "ribonuclease activity"
evidence=ISS] [GO:0006401 "RNA catabolic process" evidence=ISS]
[GO:0008033 "tRNA processing" evidence=ISS] InterPro:IPR002381
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006401 GO:GO:0008033 GO:GO:0000049
GO:GO:0004540 InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689
Pfam:PF03725 SUPFAM:SSF55666 InterPro:IPR018336 PROSITE:PS01277
GO:GO:0004549 KO:K00989 OMA:MLPRATG ProtClustDB:PRK00173
GO:GO:0009022 HAMAP:MF_00564 TIGRFAMs:TIGR01966 PIR:D82350
RefSeq:NP_229867.2 ProteinModelPortal:Q9KVD6 SMR:Q9KVD6
DNASU:2614709 GeneID:2614709 KEGG:vch:VC0210 PATRIC:20079464
Uniprot:Q9KVD6
Length = 238
Score = 120 (47.3 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 43/140 (30%), Positives = 61/140 (43%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVF---G-PRESK---KAMMY 89
+RPD+R Q RP A GS EFGNTKV+ + G PR K K +
Sbjct: 1 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60
Query: 90 SNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L T G QG + ++ ++L + LE + + V V++
Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA 168
+ G I+ ASVALADA
Sbjct: 121 ADGGTRTASITGASVALADA 140
>FB|FBgn0037815 [details] [associations]
symbol:Rrp46 "Rrp46" species:7227 "Drosophila melanogaster"
[GO:0006397 "mRNA processing" evidence=ISS] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISS;IDA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISS] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0010468 "regulation of gene
expression" evidence=IMP] InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005737 GO:GO:0010468 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000176 eggNOG:COG0689 SUPFAM:SSF55666
EMBL:AY058481 ProteinModelPortal:Q95TW1 SMR:Q95TW1 STRING:Q95TW1
PaxDb:Q95TW1 PRIDE:Q95TW1 FlyBase:FBgn0037815 InParanoid:Q95TW1
OrthoDB:EOG4BRV2M ArrayExpress:Q95TW1 Bgee:Q95TW1 Uniprot:Q95TW1
Length = 233
Score = 118 (46.6 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 49/195 (25%), Positives = 83/195 (42%)
Query: 57 VNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFA-TPVRGQGSDH 115
++ GS G T +I +V GP E K + + L CN Y A P Q +D
Sbjct: 24 LSRCDGSVMYSQGATGLIGAVLGPIEVKTQNLSIDGSYLECN--YRPKAGLP---QVTD- 77
Query: 116 KDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGI-MMYD 174
+ + + LE A++ E P++ + V LE GS ++CA +A+ G+ + Y
Sbjct: 78 RIREAAIRDVLELALLSEAHPRSKMSVQIQELEDRGSIDACAVNCACLAMLIGGLPLKYS 137
Query: 175 LVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQ 234
A ++ ++DP E +Q S A + + G + FN+
Sbjct: 138 FAAVHAIINEQGEYVLDPDQSETLHQRASFTFAFDSVEGNLLLIQTKGSFKIAQFNDIEC 197
Query: 235 LCLDASAKLGKIMRS 249
LC ASA++ + R+
Sbjct: 198 LCRAASAEIFQFYRN 212
>UNIPROTKB|Q10628 [details] [associations]
symbol:rph "Ribonuclease PH" species:1773 "Mycobacterium
tuberculosis" [GO:0005886 "plasma membrane" evidence=IDA]
InterPro:IPR002381 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005886 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0008033 GO:GO:0000049
InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689 Pfam:PF03725
SUPFAM:SSF55666 InterPro:IPR018336 PROSITE:PS01277 GO:GO:0004549
HOGENOM:HOG000229516 KO:K00989 OMA:MLPRATG ProtClustDB:PRK00173
GO:GO:0009022 HAMAP:MF_00564 TIGRFAMs:TIGR01966 PIR:C70739
RefSeq:NP_215856.1 RefSeq:NP_335832.1 RefSeq:YP_006514718.1
PDB:3B4T PDBsum:3B4T ProteinModelPortal:Q10628 SMR:Q10628
PRIDE:Q10628 EnsemblBacteria:EBMYCT00000003516
EnsemblBacteria:EBMYCT00000071385 GeneID:13319926 GeneID:886864
GeneID:924657 KEGG:mtc:MT1381 KEGG:mtu:Rv1340 KEGG:mtv:RVBD_1340
PATRIC:18124810 TubercuList:Rv1340 EvolutionaryTrace:Q10628
Uniprot:Q10628
Length = 259
Score = 118 (46.6 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 39/139 (28%), Positives = 62/139 (44%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R H+ RP G + +GS EFG+TKV+ + + + +G L
Sbjct: 4 REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTA 63
Query: 98 NVSYTTFAT-------PVRGQGSDH-KDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ AT VRG+ S ++ S ++ ++L I L + T+ + VL++
Sbjct: 64 EYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123
Query: 150 GGSDLPVVISCASVALADA 168
G I+ A VALADA
Sbjct: 124 DGGTRTAAITGAYVALADA 142
>TIGR_CMR|CPS_0112 [details] [associations]
symbol:CPS_0112 "ribonuclease PH" species:167879
"Colwellia psychrerythraea 34H" [GO:0004549 "tRNA-specific
ribonuclease activity" evidence=ISS] [GO:0042780 "tRNA 3'-end
processing" evidence=ISS] InterPro:IPR002381 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0008033 GO:GO:0000049
InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689 Pfam:PF03725
SUPFAM:SSF55666 InterPro:IPR018336 PROSITE:PS01277 HSSP:O29756
GO:GO:0004549 HOGENOM:HOG000229516 KO:K00989 OMA:MLPRATG
GO:GO:0009022 HAMAP:MF_00564 TIGRFAMs:TIGR01966 RefSeq:YP_266880.1
ProteinModelPortal:Q48AN3 SMR:Q48AN3 STRING:Q48AN3 GeneID:3519509
KEGG:cps:CPS_0112 PATRIC:21463641
BioCyc:CPSY167879:GI48-215-MONOMER Uniprot:Q48AN3
Length = 237
Score = 117 (46.2 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 42/140 (30%), Positives = 60/140 (42%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RP R Q RP A GS EFG+TKVI V V PR K K +
Sbjct: 1 MRPSGRTLGQIRPVTITRQFTTHAEGSVLIEFGDTKVICTATVEVGVPRFLKGQGKGWVT 60
Query: 90 SNIGRLNCNVSYTTFATPVRGQGSDHK-DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L + G+ S + S ++ +AL A+ L+ + T+ V V++
Sbjct: 61 AEYGMLPRSTHTRMRREAASGKQSGRTLEISRLIARALRAAVDLKALGENTISVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA 168
+ G I+ A VAL DA
Sbjct: 121 ADGGTRTAAITGACVALVDA 140
>UNIPROTKB|P50849 [details] [associations]
symbol:pnp "Polyribonucleotide nucleotidyltransferase"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0005515 "protein binding" evidence=IPI] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 EMBL:AL009126
GenomeReviews:AL009126_GR GO:GO:0006402 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 GO:GO:0030420 InterPro:IPR022967
SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
ProtClustDB:PRK11824 EMBL:U29668 EMBL:Z80835 PIR:S70691
RefSeq:NP_389551.1 ProteinModelPortal:P50849 SMR:P50849
IntAct:P50849 EnsemblBacteria:EBBACT00000003076 GeneID:939646
KEGG:bsu:BSU16690 PATRIC:18975145 GenoList:BSU16690
BioCyc:BSUB:BSU16690-MONOMER Uniprot:P50849
Length = 705
Score = 124 (48.7 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 63/240 (26%), Positives = 102/240 (42%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----------VSVF---GPRES 83
+RPD RG Q RP G + GS G T+ + V + G ES
Sbjct: 315 VRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGVEES 374
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILET-FPKTTVDV 142
K+ M + N + + V T P+RG G ++ +ALE I E FP T V +
Sbjct: 375 KRFMHHYNFPQFS--VGETG---PMRGPGRREIGHGALGERALEPVIPSEKDFPYT-VRL 428
Query: 143 FALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCL--GKN--LLIDPVLEEES 198
+ VLES GS I +++A+ DAG+ + VA +++ + G++ +L D E++
Sbjct: 429 VSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEHYTVLTDIQGMEDA 488
Query: 199 YQDGSLMIACMPSRYEVTQLTVTGEW-STPHFNEAMQLCLDASAKLGKIMRSCLKEAASD 257
D +A Q+ + E S EA+Q ++ M + L E+ +
Sbjct: 489 LGDMDFKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLATLSESRKE 548
>SGD|S000003327 [details] [associations]
symbol:RRP46 "Exosome non-catalytic core component"
species:4932 "Saccharomyces cerevisiae" [GO:0005730 "nucleolus"
evidence=IEA] [GO:0071038 "nuclear polyadenylation-dependent tRNA
catabolic process" evidence=IDA] [GO:0000177 "cytoplasmic exosome
(RNase complex)" evidence=IDA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IDA] [GO:0070651 "nonfunctional rRNA decay"
evidence=IC] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay" evidence=IC]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000178 "exosome (RNase complex)" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IMP]
[GO:0071051 "polyadenylation-dependent snoRNA 3'-end processing"
evidence=IC] [GO:0071035 "nuclear polyadenylation-dependent rRNA
catabolic process" evidence=IMP] [GO:0070481 "nuclear-transcribed
mRNA catabolic process, non-stop decay" evidence=IC] [GO:0043628
"ncRNA 3'-end processing" evidence=IC] [GO:0034427
"nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'"
evidence=IC] InterPro:IPR001247 SGD:S000003327 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005730 EMBL:BK006941 GO:GO:0003723
GO:GO:0071035 GO:GO:0071038 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0000176 GO:GO:0000177 GO:GO:0000467 GO:GO:0070651
GO:GO:0071042 GO:GO:0070478 GO:GO:0070481 GO:GO:0071051
eggNOG:COG0689 Pfam:PF03725 SUPFAM:SSF55666 KO:K12590
GeneTree:ENSGT00550000075002 OMA:YPRQLIQ OrthoDB:EOG4HDX3Z
EMBL:Z72880 EMBL:AY389297 PIR:S64390 RefSeq:NP_011609.2
ProteinModelPortal:P53256 SMR:P53256 DIP:DIP-6838N IntAct:P53256
MINT:MINT-614217 STRING:P53256 PaxDb:P53256 PeptideAtlas:P53256
EnsemblFungi:YGR095C GeneID:852987 KEGG:sce:YGR095C CYGD:YGR095c
HOGENOM:HOG000248419 NextBio:972806 Genevestigator:P53256
GermOnline:YGR095C Uniprot:P53256
Length = 223
Score = 111 (44.1 bits), Expect = 0.00026, P = 0.00026
Identities = 39/152 (25%), Positives = 65/152 (42%)
Query: 55 GAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSD 114
G ++ GS+ +TKVI SV GP E K L ++ P +G +
Sbjct: 8 GILDHVDGSSEFVSQDTKVICSVTGPIEPKARQ------ELPTQLALEIIVRPAKGVATT 61
Query: 115 H-KDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSD-------LPVVISCASVALA 166
K L L I +P+ + +LESG + L I+ A +AL
Sbjct: 62 REKVLEDKLRAVLTPLITRHCYPRQLCQITCQILESGEDEAEFSLRELSCCINAAFLALV 121
Query: 167 DAGIMMYDLVASVSVSCLG--KNLLIDPVLEE 196
DAGI + + AS+ ++ + ++++DP E+
Sbjct: 122 DAGIALNSMCASIPIAIIKDTSDIIVDPTAEQ 153
>TIGR_CMR|CJE_1390 [details] [associations]
symbol:CJE_1390 "polyribonucleotide
nucleotidyltransferase" species:195099 "Campylobacter jejuni
RM1221" [GO:0004654 "polyribonucleotide nucleotidyltransferase
activity" evidence=ISS] [GO:0006402 "mRNA catabolic process"
evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
GO:GO:0006396 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 HSSP:Q9UXC2 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 OMA:YTMRVVS HOGENOM:HOG000218326
ProtClustDB:PRK11824 RefSeq:YP_179377.1 ProteinModelPortal:Q5HTK8
STRING:Q5HTK8 GeneID:3231896 KEGG:cjr:CJE1390 PATRIC:20044580
BioCyc:CJEJ195099:GJC0-1417-MONOMER Uniprot:Q5HTK8
Length = 719
Score = 117 (46.2 bits), Expect = 0.00042, P = 0.00042
Identities = 52/238 (21%), Positives = 100/238 (42%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTK--VIVSVFGPRESKKAMMYSNIG-- 93
R D R ++ RP T + +A GS G T+ V+ ++ G +++ + +
Sbjct: 336 RADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEKNPI 395
Query: 94 --RLNCNVSYTTF----ATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVL 147
R N ++ F A+P++ G ++ +AL ++ E +P + + + +L
Sbjct: 396 SERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSVD-ENYPYV-IRLVSEIL 453
Query: 148 ESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCL---GKNLLIDPVLEEESYQDGSL 204
ES GS + S+AL AG+ LVA V++ + K ++ ++ E + DG +
Sbjct: 454 ESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKYAVLTDIMGLEDH-DGDM 512
Query: 205 MIACMPSRYEVTQLTVT---GEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDEQ 259
S+ VT L + G +A+ + + IM KE +E+
Sbjct: 513 DFKVAGSKDGVTALQMDIKLGGIDQETLKQALYQAKEGRIHILNIMEEAAKEIIVNEE 570
>UNIPROTKB|P0CG19 [details] [associations]
symbol:rph "RNase PH monomer" species:83333 "Escherichia
coli K-12" [GO:0004549 "tRNA-specific ribonuclease activity"
evidence=IEA] [GO:0000049 "tRNA binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IDA] [GO:0042780 "tRNA 3'-end
processing" evidence=IDA] [GO:0009022 "tRNA nucleotidyltransferase
activity" evidence=IEA;IDA] [GO:0006399 "tRNA metabolic process"
evidence=EXP] InterPro:IPR002381 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0004527
EMBL:L10328 GO:GO:0000049 InterPro:IPR020568 SUPFAM:SSF54211
EMBL:V01578 Pfam:PF03725 SUPFAM:SSF55666 InterPro:IPR018336
PROSITE:PS01277 GO:GO:0042780 GO:GO:0004549 KO:K00989 GO:GO:0009022
HAMAP:MF_00564 TIGRFAMs:TIGR01966 EMBL:X72920 PIR:A04470
RefSeq:YP_001491547.1 ProteinModelPortal:P0CG19 SMR:P0CG19
IntAct:P0CG19 EnsemblBacteria:EBESCT00000003143
EnsemblBacteria:EBESCT00000018485 GeneID:948156 KEGG:eco:b3643
PATRIC:32122773 EcoGene:EG10863 BioCyc:EcoCyc:EG10863-MONOMER
BioCyc:MetaCyc:EG10863-MONOMER Uniprot:P0CG19
Length = 228
Score = 109 (43.4 bits), Expect = 0.00048, P = 0.00048
Identities = 39/140 (27%), Positives = 61/140 (43%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVF---G-PRESK---KAMMY 89
+RP R +Q RP A GS EFG+TKV+ + G PR K + +
Sbjct: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60
Query: 90 SNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L + +G QG + ++ +AL A+ L+ + T+ + VL+
Sbjct: 61 AEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQ 120
Query: 149 SGGSDLPVVISCASVALADA 168
+ G I+ A VAL DA
Sbjct: 121 ADGGTRTASITGACVALVDA 140
>TAIR|locus:2202705 [details] [associations]
symbol:AT1G60080 "AT1G60080" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0006396 "RNA processing"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0042991
"transcription factor import into nucleus" evidence=RCA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 InterPro:IPR020568
SUPFAM:SSF54211 EMBL:AC005966 SUPFAM:SSF55666 eggNOG:COG2123
HOGENOM:HOG000229504 KO:K12586 OMA:ECINRAT EMBL:BT004614
EMBL:AK227971 IPI:IPI00541560 PIR:D96625 RefSeq:NP_176216.1
UniGene:At.36723 ProteinModelPortal:Q9ZUI4 SMR:Q9ZUI4 IntAct:Q9ZUI4
STRING:Q9ZUI4 PaxDb:Q9ZUI4 PRIDE:Q9ZUI4 EnsemblPlants:AT1G60080.1
GeneID:842303 KEGG:ath:AT1G60080 TAIR:At1g60080 InParanoid:Q9ZUI4
PhylomeDB:Q9ZUI4 ProtClustDB:CLSN2679723 Genevestigator:Q9ZUI4
Uniprot:Q9ZUI4
Length = 302
Score = 78 (32.5 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 18 IDPTRKTRPPIFSGSDV-DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVS 76
+D R+ P F + + LRPD R + R G V++A GSA A+ G+T ++ +
Sbjct: 16 VDAFRRIFPLRFFERHLSESLRPDGRQLGKARDTIVNLGLVSTADGSALAKIGSTTMLAA 75
Query: 77 V 77
+
Sbjct: 76 I 76
Score = 73 (30.8 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 23/80 (28%), Positives = 42/80 (52%)
Query: 180 SVSC-LGKN-LLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCL 237
S++C L KN +L DP EEES D +L+ + S ++ +G + ++ A++ C+
Sbjct: 225 SLTCILHKNYILADPTTEEESIMD-TLVTVVLDSSDQMVSFYKSGGAALA-YSSAIKSCV 282
Query: 238 DASAKLGKIMRSCLKEAASD 257
+ + K K ++ L E D
Sbjct: 283 ELARKRAKELKQILGEMDID 302
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.132 0.390 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 260 244 0.00098 113 3 11 22 0.43 33
32 0.45 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 53
No. of states in DFA: 607 (65 KB)
Total size of DFA: 188 KB (2108 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.59u 0.18s 20.77t Elapsed: 00:00:01
Total cpu time: 20.60u 0.18s 20.78t Elapsed: 00:00:01
Start: Sat May 11 06:49:36 2013 End: Sat May 11 06:49:37 2013