BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024906
(260 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|356539380|ref|XP_003538176.1| PREDICTED: exosome complex component MTR3-like [Glycine max]
Length = 255
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 214/262 (81%), Positives = 228/262 (87%), Gaps = 9/262 (3%)
Query: 1 MAAKPSTTTTAKATYSPIDPT--RKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVN 58
MA K T ATYSP PT RK +PPIF DW+RPD RGFHQCRPAFFRTGAVN
Sbjct: 1 MAGKGGAT---PATYSP-SPTTNRKKKPPIFKE---DWVRPDGRGFHQCRPAFFRTGAVN 53
Query: 59 SASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDF 118
+ASGSAYAEFGNTKVIVSVFGPRESKKAMMYS+IGRLNCNVS+TTFATP+RGQGSDHK++
Sbjct: 54 AASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCNVSFTTFATPIRGQGSDHKEY 113
Query: 119 SSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVAS 178
+MLHKALEGAIILETFPKTTVDVFALVLES GSDLPVVISCAS+ALADAGIMMYD+VAS
Sbjct: 114 CAMLHKALEGAIILETFPKTTVDVFALVLESSGSDLPVVISCASLALADAGIMMYDIVAS 173
Query: 179 VSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLD 238
VSVSC KNL+IDP+LEEE QDGSLMI CMPSRYE+TQLTVTGEWST NE MQLCLD
Sbjct: 174 VSVSCFNKNLVIDPILEEEIGQDGSLMITCMPSRYEITQLTVTGEWSTTKINEGMQLCLD 233
Query: 239 ASAKLGKIMRSCLKEAASDEQE 260
A AKL KIMRSCLKE ASD QE
Sbjct: 234 ACAKLAKIMRSCLKEVASDSQE 255
>gi|357472161|ref|XP_003606365.1| Exosome complex exonuclease MTR3 [Medicago truncatula]
gi|355507420|gb|AES88562.1| Exosome complex exonuclease MTR3 [Medicago truncatula]
Length = 258
Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust.
Identities = 210/260 (80%), Positives = 228/260 (87%), Gaps = 5/260 (1%)
Query: 1 MAAKPSTTTTAKATYSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSA 60
MA K TT ATYSP T K +P + + DW RPD RGFHQCRPAFFRTGAVN+A
Sbjct: 1 MAGKSGTT---PATYSPSLTTGKKKPLLLK--EEDWTRPDGRGFHQCRPAFFRTGAVNAA 55
Query: 61 SGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSS 120
SGSAYAEFGNTKVIVSVFGPRESKKAMMYS+ GRLNCNVSYTTF+TPVRGQGSDHK++SS
Sbjct: 56 SGSAYAEFGNTKVIVSVFGPRESKKAMMYSDTGRLNCNVSYTTFSTPVRGQGSDHKEYSS 115
Query: 121 MLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVS 180
MLHKALEGAIIL++FPKTTVDVFALVLES GSDLPVVIS AS+ALADAGI+MYDLVASVS
Sbjct: 116 MLHKALEGAIILDSFPKTTVDVFALVLESSGSDLPVVISVASLALADAGILMYDLVASVS 175
Query: 181 VSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDAS 240
VSCLGKNL+IDP+ EEE+ QDGSLMI CMPSRYE+TQLTVTGEWSTP NE MQLCLDA
Sbjct: 176 VSCLGKNLVIDPIFEEENSQDGSLMITCMPSRYEITQLTVTGEWSTPKINEGMQLCLDAC 235
Query: 241 AKLGKIMRSCLKEAASDEQE 260
AKL KIMRSCLKE+ASD Q+
Sbjct: 236 AKLAKIMRSCLKESASDAQD 255
>gi|356542629|ref|XP_003539769.1| PREDICTED: exosome complex component MTR3-like [Glycine max]
Length = 254
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 212/260 (81%), Positives = 226/260 (86%), Gaps = 6/260 (2%)
Query: 1 MAAKPSTTTTAKATYSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSA 60
MA K +T ATYSP T K +P +F + D RPD R FHQCRPAFFRTGAVN+A
Sbjct: 1 MAGKGGST---PATYSPSPTTDKKKPSLF---NEDLARPDGRSFHQCRPAFFRTGAVNAA 54
Query: 61 SGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSS 120
SGSAYAE GNTKVIVSVFGPRESKKAMMYS+IGRLNCNVS+TTFATP+RGQGSDHK++SS
Sbjct: 55 SGSAYAEVGNTKVIVSVFGPRESKKAMMYSDIGRLNCNVSFTTFATPIRGQGSDHKEYSS 114
Query: 121 MLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVS 180
MLHKALEGAIILETFPKTTVDVFALVLES GSDLPVVISCAS+ALADAGIMMYDLVASVS
Sbjct: 115 MLHKALEGAIILETFPKTTVDVFALVLESSGSDLPVVISCASLALADAGIMMYDLVASVS 174
Query: 181 VSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDAS 240
VSC KNL+IDPVLEEE+ QDGSLMI CMPSRYE+TQLTVTGEWSTP NE MQLCLDA
Sbjct: 175 VSCFNKNLVIDPVLEEENGQDGSLMITCMPSRYEITQLTVTGEWSTPKINEGMQLCLDAC 234
Query: 241 AKLGKIMRSCLKEAASDEQE 260
AKL KIMRSCLKEA SD QE
Sbjct: 235 AKLAKIMRSCLKEAVSDSQE 254
>gi|449456022|ref|XP_004145749.1| PREDICTED: exosome complex component MTR3-like [Cucumis sativus]
gi|449531263|ref|XP_004172607.1| PREDICTED: exosome complex component MTR3-like [Cucumis sativus]
Length = 258
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 201/234 (85%), Positives = 219/234 (93%)
Query: 22 RKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPR 81
KTRP +F DV+W+RPD RGFHQCRPAFFRTGAVN+ASGSAYAEFGNTKVIVSVFGPR
Sbjct: 19 HKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPR 78
Query: 82 ESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVD 141
ESKKAMMYS+IGRLNC+VSYTTF+TPVRGQGS++KDFSSMLHK+LEGAIILE+FPKTTVD
Sbjct: 79 ESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLHKSLEGAIILESFPKTTVD 138
Query: 142 VFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQD 201
VFALVLESGGSDLPVVISCAS+ALADAGIM+YDLVASVSVSC GKNLLID VLEEE+YQD
Sbjct: 139 VFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDTVLEEENYQD 198
Query: 202 GSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAA 255
GSLMI CMPSRYEVTQLT+TGEW+T NE MQLCLDAS KL +IMRSCLKE+A
Sbjct: 199 GSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESA 252
>gi|224106782|ref|XP_002314284.1| predicted protein [Populus trichocarpa]
gi|222850692|gb|EEE88239.1| predicted protein [Populus trichocarpa]
Length = 257
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 201/232 (86%), Positives = 217/232 (93%)
Query: 25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK 84
R FS SDVDWLRPD RGFHQCRPAFFRTGAVNSA+GSAYAEFGNTKVIVSVFGPRESK
Sbjct: 22 RSSFFSDSDVDWLRPDGRGFHQCRPAFFRTGAVNSAAGSAYAEFGNTKVIVSVFGPRESK 81
Query: 85 KAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFA 144
KAM+YS++GRLNCNVS TTFATP RG GSD+K+FSSMLHKALEGAI+LETFPKTTVDVFA
Sbjct: 82 KAMVYSDVGRLNCNVSCTTFATPARGLGSDNKEFSSMLHKALEGAIMLETFPKTTVDVFA 141
Query: 145 LVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSL 204
LVLESGGSDLPVVISCAS+ALADAGIMMYDLVA VSVSCLG+NL+IDP+LEEES+QDGSL
Sbjct: 142 LVLESGGSDLPVVISCASLALADAGIMMYDLVAGVSVSCLGRNLIIDPILEEESFQDGSL 201
Query: 205 MIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAAS 256
MI CMPSRYEVTQL++TGEWST NEAMQLCLDA +KL KIMR+CLKEAAS
Sbjct: 202 MITCMPSRYEVTQLSITGEWSTAKLNEAMQLCLDACSKLDKIMRACLKEAAS 253
>gi|225435349|ref|XP_002285257.1| PREDICTED: exosome complex component MTR3 [Vitis vinifera]
gi|147834996|emb|CAN61380.1| hypothetical protein VITISV_037546 [Vitis vinifera]
gi|297746275|emb|CBI16331.3| unnamed protein product [Vitis vinifera]
Length = 254
Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/260 (79%), Positives = 228/260 (87%), Gaps = 6/260 (2%)
Query: 1 MAAKPSTTTTAKATYSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSA 60
MA K + T + TYSP P KT+ PIF DVDW+RPD RGFHQCRPAF +TGAVN+A
Sbjct: 1 MAGKSAATPS---TYSP-SPAPKTKRPIFQ--DVDWVRPDGRGFHQCRPAFLKTGAVNAA 54
Query: 61 SGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSS 120
SGSAYAEFGNTKVIVSVFGPRESKKAM YS GRLNCNVSYTTFA P+RGQGSDHK +SS
Sbjct: 55 SGSAYAEFGNTKVIVSVFGPRESKKAMAYSGTGRLNCNVSYTTFAMPIRGQGSDHKGYSS 114
Query: 121 MLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVS 180
MLHKALEGAII+E+FPKTTVDVFALVLESGGSDLPVVISCAS+ALADAGIMMYDLVASVS
Sbjct: 115 MLHKALEGAIIVESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVASVS 174
Query: 181 VSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDAS 240
VSCLGKNL+IDP+LEEESYQDGSL+I CMPSR EVTQLTV GEWSTP +EAMQ+CL+A
Sbjct: 175 VSCLGKNLVIDPILEEESYQDGSLLITCMPSRNEVTQLTVNGEWSTPRVHEAMQICLEAC 234
Query: 241 AKLGKIMRSCLKEAASDEQE 260
+KL KI+RSCLKE AS ++
Sbjct: 235 SKLAKIIRSCLKETASAPKD 254
>gi|224132514|ref|XP_002328307.1| predicted protein [Populus trichocarpa]
gi|222837822|gb|EEE76187.1| predicted protein [Populus trichocarpa]
Length = 263
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 197/239 (82%), Positives = 218/239 (91%)
Query: 22 RKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPR 81
+ RPP F+ SDVDW R D RGFHQCR AFFRTGAVNSA+GSAYAEFGNTKVIVSVFGPR
Sbjct: 25 KAQRPPFFTDSDVDWTRSDGRGFHQCRSAFFRTGAVNSAAGSAYAEFGNTKVIVSVFGPR 84
Query: 82 ESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVD 141
ESKKAMMYS+ G+LNCNVSYTTFAT V GQGSD+K+FS+MLHKALEGA++LETFPKTTVD
Sbjct: 85 ESKKAMMYSDKGKLNCNVSYTTFATTVHGQGSDNKEFSTMLHKALEGAVMLETFPKTTVD 144
Query: 142 VFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQD 201
VFALVLESGGSDLPVVISCAS+ALADAGIMMYDLVA VSVSCLG+NL+IDP LEEES+QD
Sbjct: 145 VFALVLESGGSDLPVVISCASLALADAGIMMYDLVAGVSVSCLGRNLIIDPTLEEESFQD 204
Query: 202 GSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDEQE 260
GSLMI CMPS YE+TQLT+TGEWST + NEAMQLCLDA +KL KI+RSCLKEAAS ++
Sbjct: 205 GSLMITCMPSHYEITQLTITGEWSTANLNEAMQLCLDACSKLAKILRSCLKEAASASKD 263
>gi|118489169|gb|ABK96391.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 257
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 199/232 (85%), Positives = 216/232 (93%)
Query: 25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK 84
R FS SD+DWLRPD RGFHQCRPAFFRTGAVNSA+GSAYAEFGNTKVIVSVFGPRESK
Sbjct: 22 RSSFFSDSDIDWLRPDGRGFHQCRPAFFRTGAVNSAAGSAYAEFGNTKVIVSVFGPRESK 81
Query: 85 KAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFA 144
KAM+YS++GRLNCNVS TTFATP RG GSD+K+FSSMLHKALEGAI+LETFPKTTVDVFA
Sbjct: 82 KAMVYSDVGRLNCNVSCTTFATPARGLGSDNKEFSSMLHKALEGAIMLETFPKTTVDVFA 141
Query: 145 LVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSL 204
LVLESGGSDLPVVISCAS+ALADAGIMMYDLVA VSVSCLG+NL+IDP+LEEES+QDGSL
Sbjct: 142 LVLESGGSDLPVVISCASLALADAGIMMYDLVAGVSVSCLGRNLIIDPILEEESFQDGSL 201
Query: 205 MIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAAS 256
MI CMPSRYEVTQL++TGEWST NEAM LCLDA +KL KIMR+CLKEAAS
Sbjct: 202 MITCMPSRYEVTQLSITGEWSTAKLNEAMHLCLDACSKLDKIMRACLKEAAS 253
>gi|388499452|gb|AFK37792.1| unknown [Lotus japonicus]
Length = 253
Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust.
Identities = 207/260 (79%), Positives = 225/260 (86%), Gaps = 7/260 (2%)
Query: 1 MAAKPSTTTTAKATYSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSA 60
MA K T ATYSP T K + + DW+RPD RGFHQCRPAFFRTGAVN+A
Sbjct: 1 MAGKAGAT---PATYSPSPTTDKKKTSLIKE---DWVRPDGRGFHQCRPAFFRTGAVNAA 54
Query: 61 SGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSS 120
SGSAYAEFGNTKVIVSVFGPRESKKAM+YS++GRLNCNVSYTTFATPVRGQGSDHKD+S+
Sbjct: 55 SGSAYAEFGNTKVIVSVFGPRESKKAMLYSDVGRLNCNVSYTTFATPVRGQGSDHKDYSA 114
Query: 121 MLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVS 180
ML KAL GAIILE+FPKTTVDVFALVLESGGSDLPVVISCAS+ALADAGIMMYDLVASVS
Sbjct: 115 MLDKALGGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVASVS 174
Query: 181 VSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDAS 240
VSCL KNL+IDP+ EEE+ QDGS+MI CMPSRYE+TQLTVTGEWSTP NE MQLCLDA
Sbjct: 175 VSCLSKNLVIDPISEEENCQDGSIMITCMPSRYEITQLTVTGEWSTPKINEGMQLCLDAC 234
Query: 241 AKLGKIMRSCLKEAASDEQE 260
AKL K+MRSCLKE ASD Q+
Sbjct: 235 AKLAKVMRSCLKE-ASDSQD 253
>gi|118487722|gb|ABK95685.1| unknown [Populus trichocarpa]
Length = 257
Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust.
Identities = 199/232 (85%), Positives = 215/232 (92%)
Query: 25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK 84
R FS SDVDWLRPD R F QCRPAFFRTGAVNSA+GSAYAEFGNTKVIVSVFGPRESK
Sbjct: 22 RSSFFSDSDVDWLRPDGRDFQQCRPAFFRTGAVNSAAGSAYAEFGNTKVIVSVFGPRESK 81
Query: 85 KAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFA 144
KAM+YS++GRLNCNVS TTFATP RG GSD+K+FSSMLHKALEGAI+LETFPKTTVDVFA
Sbjct: 82 KAMVYSDVGRLNCNVSCTTFATPARGLGSDNKEFSSMLHKALEGAIMLETFPKTTVDVFA 141
Query: 145 LVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSL 204
LVLESGGSDLPVVISCAS+ALADAGIMMYDLVA VSVSCLG+NL+IDP+LEEES+QDGSL
Sbjct: 142 LVLESGGSDLPVVISCASLALADAGIMMYDLVAGVSVSCLGRNLIIDPILEEESFQDGSL 201
Query: 205 MIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAAS 256
MI CMPSRYEVTQL++TGEWST NEAMQLCLDA +KL KIMR+CLKEAAS
Sbjct: 202 MITCMPSRYEVTQLSITGEWSTAKLNEAMQLCLDACSKLDKIMRACLKEAAS 253
>gi|297803352|ref|XP_002869560.1| hypothetical protein ARALYDRAFT_492045 [Arabidopsis lyrata subsp.
lyrata]
gi|297315396|gb|EFH45819.1| hypothetical protein ARALYDRAFT_492045 [Arabidopsis lyrata subsp.
lyrata]
Length = 256
Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust.
Identities = 197/260 (75%), Positives = 225/260 (86%), Gaps = 4/260 (1%)
Query: 1 MAAKPSTTTTAKATYSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSA 60
MAAKP T TYSP +TR PIF SD+DW RPD RGFHQCRPA +TGAV+SA
Sbjct: 1 MAAKPGAAT---PTYSP-KLVGRTRLPIFKDSDLDWSRPDGRGFHQCRPALLQTGAVSSA 56
Query: 61 SGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSS 120
SGSAYAEFGNTKVIVSVFGPRESKKAM++S++GRLNCNVSYTTFA+P GQG+DHK++SS
Sbjct: 57 SGSAYAEFGNTKVIVSVFGPRESKKAMVFSDVGRLNCNVSYTTFASPTLGQGTDHKEYSS 116
Query: 121 MLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVS 180
MLHKALEG II+ETFPKTTVDVFALVLESGGSDL VVISCAS+ALADAGIMMYDL+ +VS
Sbjct: 117 MLHKALEGVIIMETFPKTTVDVFALVLESGGSDLSVVISCASLALADAGIMMYDLITAVS 176
Query: 181 VSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDAS 240
VSC+GK+L+IDPV EEE +DGS M+ CMPSRYE+TQLTVTGEW+TP+ NEAMQLCLDA
Sbjct: 177 VSCIGKSLMIDPVTEEEGCEDGSFMMTCMPSRYEITQLTVTGEWTTPNINEAMQLCLDAC 236
Query: 241 AKLGKIMRSCLKEAASDEQE 260
+KLG+IMR LK+AAS +E
Sbjct: 237 SKLGEIMRDLLKQAASASEE 256
>gi|42567185|ref|NP_194479.2| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana]
gi|124300968|gb|ABN04736.1| At4g27490 [Arabidopsis thaliana]
gi|124301080|gb|ABN04792.1| At4g27490 [Arabidopsis thaliana]
gi|332659949|gb|AEE85349.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana]
Length = 256
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 194/260 (74%), Positives = 225/260 (86%), Gaps = 4/260 (1%)
Query: 1 MAAKPSTTTTAKATYSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSA 60
MAAKP T TYSP ++R PIF SD+DW RPD RGFHQCRPA +TGAV+SA
Sbjct: 1 MAAKPGAAT---PTYSP-KIVGRSRLPIFKDSDLDWSRPDGRGFHQCRPALLQTGAVSSA 56
Query: 61 SGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSS 120
SGSAYAEFGNTKVIVSVFGPRESKKAM+YS++GRLNCNVSYT FA+P GQG+DHK++SS
Sbjct: 57 SGSAYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLNCNVSYTNFASPTLGQGTDHKEYSS 116
Query: 121 MLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVS 180
MLHKALEG I++ETFPKTTVDVFALVLESGGSDL V+ISCAS+ALADAGIMMYDL+ +VS
Sbjct: 117 MLHKALEGVIMMETFPKTTVDVFALVLESGGSDLSVLISCASLALADAGIMMYDLITAVS 176
Query: 181 VSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDAS 240
VSC+GK+L+IDPV EEE +DGS M+ CMPSRYE+TQLT+TGEW+TP+ NEAMQLCLDAS
Sbjct: 177 VSCIGKSLMIDPVTEEEGCEDGSFMMTCMPSRYEITQLTITGEWTTPNINEAMQLCLDAS 236
Query: 241 AKLGKIMRSCLKEAASDEQE 260
+KLG+IMR CLK++AS E
Sbjct: 237 SKLGEIMRDCLKQSASASDE 256
>gi|242046408|ref|XP_002461075.1| hypothetical protein SORBIDRAFT_02g040250 [Sorghum bicolor]
gi|241924452|gb|EER97596.1| hypothetical protein SORBIDRAFT_02g040250 [Sorghum bicolor]
Length = 261
Score = 358 bits (918), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 165/224 (73%), Positives = 195/224 (87%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI 92
D DW R D R FH CRPAF +TG +ASGSAYAEFG TKVIVSVFGPRESKKAMMYS+I
Sbjct: 34 DADWPRADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMMYSDI 93
Query: 93 GRLNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
GRLNCNVSYTTFATPVRGQG+D+K++SSML+KALEGA++L TFPKTTVDVFALVLESGGS
Sbjct: 94 GRLNCNVSYTTFATPVRGQGADNKEYSSMLYKALEGAVMLHTFPKTTVDVFALVLESGGS 153
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSR 212
DLP++ISCAS+ALADAGIMMYDLV SVSVSC GKN++IDP +EE++QDGSL++A MP+R
Sbjct: 154 DLPIIISCASLALADAGIMMYDLVTSVSVSCFGKNIIIDPTSDEEAWQDGSLVVAFMPAR 213
Query: 213 YEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAAS 256
E+TQLT+TGEWS A++LC+DA +KLG I+R LK+ A+
Sbjct: 214 KEITQLTLTGEWSDGRITNAVELCMDACSKLGDILRDHLKDTAT 257
>gi|414887731|tpg|DAA63745.1| TPA: hypothetical protein ZEAMMB73_187174 [Zea mays]
Length = 261
Score = 355 bits (912), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 164/224 (73%), Positives = 194/224 (86%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI 92
D DW R D R FH CRPAF +TG +ASGSAYAEFG TKVIVSVFGPRESKKAMMYS++
Sbjct: 34 DADWPRADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMMYSDV 93
Query: 93 GRLNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
GRLNCNVSYTTFATPVRGQG+D+K++SSMLHKALEGA++L TFPKTTVDVFALVLESGGS
Sbjct: 94 GRLNCNVSYTTFATPVRGQGADNKEYSSMLHKALEGAVMLHTFPKTTVDVFALVLESGGS 153
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSR 212
DLP++ISCAS+ALADAGIMMYDLV SVSVSC KN++IDP +EE++QDGSL++A MP+R
Sbjct: 154 DLPIIISCASLALADAGIMMYDLVTSVSVSCFRKNIIIDPTSDEEAWQDGSLVVAFMPAR 213
Query: 213 YEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAAS 256
E+TQLT+TGEWS A++LC+DA +KLG I+R LK+ A+
Sbjct: 214 KEITQLTLTGEWSDGRITNAVELCMDACSKLGDILRDRLKDTAT 257
>gi|41469640|gb|AAS07363.1| putative exoribonuclease [Oryza sativa Japonica Group]
gi|108712055|gb|ABF99850.1| 3' exoribonuclease family, domain 1 containing protein, expressed
[Oryza sativa Japonica Group]
gi|125588609|gb|EAZ29273.1| hypothetical protein OsJ_13338 [Oryza sativa Japonica Group]
gi|215768717|dbj|BAH00946.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 260
Score = 355 bits (912), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 163/224 (72%), Positives = 194/224 (86%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI 92
D DW R D R FH CRPAF +TG +ASGSAYAEFG TKVIVSVFGPRESKKAM+YS+
Sbjct: 34 DADWPRADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDT 93
Query: 93 GRLNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
GRLNCNVSYTTFATP+RGQG+D+K++S+MLHKALEGA++L TFPKTTVDVFALVLESGGS
Sbjct: 94 GRLNCNVSYTTFATPIRGQGTDNKEYSAMLHKALEGAVMLHTFPKTTVDVFALVLESGGS 153
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSR 212
DLP++ISCAS+ALADAGIMMYDLV SVSVSC GKN++IDP +EE++QDGSLM+A MP+R
Sbjct: 154 DLPIIISCASLALADAGIMMYDLVTSVSVSCFGKNIIIDPTSDEEAWQDGSLMVAYMPAR 213
Query: 213 YEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAAS 256
E+TQLT+TGEWS A++LC+DA +KL I+R LK+A+S
Sbjct: 214 KEITQLTLTGEWSDGKITNAVELCMDACSKLCDILRERLKDASS 257
>gi|125546411|gb|EAY92550.1| hypothetical protein OsI_14290 [Oryza sativa Indica Group]
Length = 260
Score = 355 bits (911), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 163/224 (72%), Positives = 194/224 (86%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI 92
D DW R D R FH CRPAF +TG +ASGSAYAEFG TKVIVSVFGPRESKKAM+YS+
Sbjct: 34 DADWPRADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDT 93
Query: 93 GRLNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
GRLNCNVSYTTFATP+RGQG+D+K++S+MLHKALEGA++L TFPKTTVDVFALVLESGGS
Sbjct: 94 GRLNCNVSYTTFATPMRGQGTDNKEYSAMLHKALEGAVMLHTFPKTTVDVFALVLESGGS 153
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSR 212
DLP++ISCAS+ALADAGIMMYDLV SVSVSC GKN++IDP +EE++QDGSLM+A MP+R
Sbjct: 154 DLPIIISCASLALADAGIMMYDLVTSVSVSCFGKNIIIDPTSDEEAWQDGSLMVAYMPAR 213
Query: 213 YEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAAS 256
E+TQLT+TGEWS A++LC+DA +KL I+R LK+A+S
Sbjct: 214 KEITQLTLTGEWSDGKITNAVELCMDACSKLCDILREHLKDASS 257
>gi|115474519|ref|NP_001060856.1| Os08g0116800 [Oryza sativa Japonica Group]
gi|50725627|dbj|BAD33094.1| putative ribonuclease PH [Oryza sativa Japonica Group]
gi|113622825|dbj|BAF22770.1| Os08g0116800 [Oryza sativa Japonica Group]
gi|125559948|gb|EAZ05396.1| hypothetical protein OsI_27604 [Oryza sativa Indica Group]
gi|125601990|gb|EAZ41315.1| hypothetical protein OsJ_25825 [Oryza sativa Japonica Group]
gi|215686578|dbj|BAG88831.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 262
Score = 353 bits (905), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 162/224 (72%), Positives = 193/224 (86%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI 92
D DW R D R FH CRPAF +TG +ASGSAYAEFG TKVIVSVFGPRESKKAM+YS+
Sbjct: 36 DADWPRADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDT 95
Query: 93 GRLNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
GRLNCNVSYTTFATP+RGQG D+K++S+MLHKALEGA++L TFPKTTVDVFALVLESGGS
Sbjct: 96 GRLNCNVSYTTFATPIRGQGMDNKEYSAMLHKALEGAVMLHTFPKTTVDVFALVLESGGS 155
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSR 212
DLP++ISCAS+ALADAGIM+YDLV SVSVSC GKN++IDP +EE++QDGS+M+A MP+R
Sbjct: 156 DLPIIISCASLALADAGIMIYDLVTSVSVSCFGKNIIIDPTSDEEAWQDGSIMVAYMPAR 215
Query: 213 YEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAAS 256
E+TQLT+TGEWS A++LC+DA +KL I+R LK+AAS
Sbjct: 216 KEITQLTLTGEWSDGKITNAVELCMDACSKLCDILRERLKDAAS 259
>gi|357121840|ref|XP_003562625.1| PREDICTED: exosome complex component MTR3-like [Brachypodium
distachyon]
Length = 262
Score = 346 bits (888), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 159/224 (70%), Positives = 192/224 (85%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI 92
D DW R D R FH CRPAF +TG +ASGSAYAEFG TKVIVSVFGPRESKKAM+YS+
Sbjct: 35 DADWPRADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDT 94
Query: 93 GRLNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
GRLNCNVSYTTFAT +RGQG D+K++S MLHKALEGA++L+TFPKTTVDVFALVLESGGS
Sbjct: 95 GRLNCNVSYTTFATGIRGQGLDNKEYSEMLHKALEGAVMLDTFPKTTVDVFALVLESGGS 154
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSR 212
DLP++ISCAS+ALADAGIMMYDLV SVSVSCLGKN++IDP +EE++QDG L+++ MP+R
Sbjct: 155 DLPIIISCASLALADAGIMMYDLVTSVSVSCLGKNVIIDPTSDEEAWQDGGLLVSYMPTR 214
Query: 213 YEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAAS 256
E+TQLT+TGEWS A++LC+DA +KL +I+R LK++ S
Sbjct: 215 KEITQLTLTGEWSDGKITNAVELCMDACSKLCEILRERLKDSTS 258
>gi|326514708|dbj|BAJ99715.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 262
Score = 341 bits (874), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 157/224 (70%), Positives = 190/224 (84%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI 92
D DW R D R H CRPAF +TG +ASGSAYAEFG TKVIVSVFGPRESKKAM+YS+
Sbjct: 35 DADWPRADGRSLHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDT 94
Query: 93 GRLNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
GRLNC+VSYTTFAT +RGQG ++K++S MLHKALEGA++L TFPKTTVDVFALVLESGGS
Sbjct: 95 GRLNCSVSYTTFATGIRGQGLENKEYSGMLHKALEGAVMLHTFPKTTVDVFALVLESGGS 154
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSR 212
DLP++ISCAS+ALADAGIMMYDLV SVSVSCLGKN++IDP +EE++QDG LM++ MP+R
Sbjct: 155 DLPIIISCASLALADAGIMMYDLVTSVSVSCLGKNVIIDPTSDEEAWQDGGLMVSYMPAR 214
Query: 213 YEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAAS 256
E+TQLT+TGEW+ A++LC+DA +KL +I+R LK+ AS
Sbjct: 215 KEITQLTLTGEWTDGKITNAVELCMDACSKLCEILRERLKDPAS 258
>gi|326521482|dbj|BAK00317.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 262
Score = 337 bits (863), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 156/224 (69%), Positives = 189/224 (84%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI 92
D DW R D R H CRPAF +TG +ASGSAYAEFG TKVIVSVFGPRESKKAM+YS+
Sbjct: 35 DADWPRADGRSLHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDT 94
Query: 93 GRLNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
GRLNC+VSYTTFAT +RGQG ++K++S MLHKALEGA++L TFPKTTVDVFALVLESGGS
Sbjct: 95 GRLNCSVSYTTFATGIRGQGLENKEYSGMLHKALEGAVMLHTFPKTTVDVFALVLESGGS 154
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSR 212
DLP++ISCAS+ALADAGIMMYDLV SVSVSCLGKN++IDP +EE++QDG LM++ MP+R
Sbjct: 155 DLPIIISCASLALADAGIMMYDLVTSVSVSCLGKNVIIDPTSDEEAWQDGGLMVSYMPAR 214
Query: 213 YEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAAS 256
E+TQLT+TGEW+ A++L +DA +KL +I+R LK+ AS
Sbjct: 215 KEITQLTLTGEWTDGKITNAVELYMDACSKLCEILRERLKDPAS 258
>gi|294464676|gb|ADE77845.1| unknown [Picea sitchensis]
Length = 256
Score = 326 bits (836), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 163/261 (62%), Positives = 207/261 (79%), Gaps = 9/261 (3%)
Query: 1 MAAKPSTTTTAKATYSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSA 60
MA KP T +T + D RK+ + D +R D R +CR AF +TGAVN+A
Sbjct: 1 MANKPGTISTYTVPAAAED--RKSHGRLLK----DGIRSDGRQLLECRLAFMKTGAVNAA 54
Query: 61 SGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG---QGSDHKD 117
+GSAYAEFG+TKVIVSVFGPRES KA +YS+ GRLNC+VS+ TF+TP+RG QG++H++
Sbjct: 55 AGSAYAEFGSTKVIVSVFGPRESSKAQIYSDTGRLNCSVSFATFSTPIRGKLSQGTEHRE 114
Query: 118 FSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVA 177
+S+MLHKALEGA++L TFPK TVDVFALVLESGG DLPVVI+CA++ALADAGIMM+D+V+
Sbjct: 115 YSTMLHKALEGAVMLNTFPKATVDVFALVLESGGGDLPVVITCATLALADAGIMMFDVVS 174
Query: 178 SVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCL 237
+VSVS +GK+L+IDP EEE+ QDG LM+AC PSR E+TQL +TGEWS+ +EA++LCL
Sbjct: 175 AVSVSSIGKSLIIDPTTEEENCQDGGLMVACTPSRNEITQLIITGEWSSTRVSEALELCL 234
Query: 238 DASAKLGKIMRSCLKEAASDE 258
DA +KL IMRSCLKEAAS +
Sbjct: 235 DACSKLAAIMRSCLKEAASGQ 255
>gi|293335373|ref|NP_001168912.1| uncharacterized protein LOC100382718 [Zea mays]
gi|223973667|gb|ACN31021.1| unknown [Zea mays]
Length = 209
Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 151/205 (73%), Positives = 181/205 (88%)
Query: 52 FRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQ 111
+TG +ASGSAYAEFG TKVIVSVFGPRESKKAMMYS++GRLNCNVSYTTFATPVRGQ
Sbjct: 1 MQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMMYSDVGRLNCNVSYTTFATPVRGQ 60
Query: 112 GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIM 171
G+D+K++SSMLHKALEGA++L TFPKTTVDVFALVLESGGSDLP++ISCAS+ALADAGIM
Sbjct: 61 GADNKEYSSMLHKALEGAVMLHTFPKTTVDVFALVLESGGSDLPIIISCASLALADAGIM 120
Query: 172 MYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNE 231
MYDLV SVSVSC KN++IDP +EE++QDGSL++A MP+R E+TQLT+TGEWS
Sbjct: 121 MYDLVTSVSVSCFRKNIIIDPTSDEEAWQDGSLVVAFMPARKEITQLTLTGEWSDGRITN 180
Query: 232 AMQLCLDASAKLGKIMRSCLKEAAS 256
A++LC+DA +KLG I+R LK+ A+
Sbjct: 181 AVELCMDACSKLGDILRDRLKDTAT 205
>gi|302760867|ref|XP_002963856.1| hypothetical protein SELMODRAFT_80529 [Selaginella moellendorffii]
gi|300169124|gb|EFJ35727.1| hypothetical protein SELMODRAFT_80529 [Selaginella moellendorffii]
Length = 250
Score = 305 bits (782), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 148/236 (62%), Positives = 187/236 (79%), Gaps = 7/236 (2%)
Query: 25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK 84
R P+FS D R D R CR AF RTGAV +A+GSAYAE G+TKVIVSVFGPRESK
Sbjct: 17 RAPVFSS---DGERIDGRHAQMCRAAFLRTGAVRAAAGSAYAESGDTKVIVSVFGPRESK 73
Query: 85 KAMMYSNIGRLNCNVSYTTFATPVRGQ----GSDHKDFSSMLHKALEGAIILETFPKTTV 140
KA +S+ GRLNCNV Y +FATPVRG+ ++ +D SSML+K++ GA+ L TFPKTTV
Sbjct: 74 KAEAFSDAGRLNCNVKYCSFATPVRGKMGAANAEERDLSSMLYKSVVGAVDLRTFPKTTV 133
Query: 141 DVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQ 200
DVFALVL+SGG DLPV+++CAS+ALADAGI++YDLVA+VSVS + +L+DP EE+ +
Sbjct: 134 DVFALVLQSGGGDLPVIVTCASLALADAGIVLYDLVAAVSVSSIQGQVLLDPSTSEENCE 193
Query: 201 DGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAAS 256
DGSLM+A MPSR E+TQ+T+TGEWS+ +E++ LCLDA AK+G +MRSCLKEAA+
Sbjct: 194 DGSLMVAYMPSRKEITQVTMTGEWSSSRASESLDLCLDACAKIGDVMRSCLKEAAA 249
>gi|302780062|ref|XP_002971806.1| hypothetical protein SELMODRAFT_441621 [Selaginella moellendorffii]
gi|300160938|gb|EFJ27555.1| hypothetical protein SELMODRAFT_441621 [Selaginella moellendorffii]
Length = 250
Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 147/236 (62%), Positives = 187/236 (79%), Gaps = 7/236 (2%)
Query: 25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK 84
R P+FS D R D R CR AF RTGAV +A+GSAYAE G+TKVIVSVFGPRESK
Sbjct: 17 RAPVFSS---DGERIDGRHAQMCRAAFLRTGAVRAAAGSAYAESGDTKVIVSVFGPRESK 73
Query: 85 KAMMYSNIGRLNCNVSYTTFATPVRGQ----GSDHKDFSSMLHKALEGAIILETFPKTTV 140
KA +S+ GRLNCNV Y +FATPVRG+ ++ +D SSML+K++ GA+ L TFPKTTV
Sbjct: 74 KAEAFSDAGRLNCNVKYCSFATPVRGKMGAANAEERDLSSMLYKSVVGAVDLRTFPKTTV 133
Query: 141 DVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQ 200
DVFALVL+SGG DLPV+++CAS+ALADAGI++YDLVA+VS S + +L+DP EE+ +
Sbjct: 134 DVFALVLQSGGGDLPVIVTCASLALADAGIVLYDLVAAVSASSIQGQVLLDPSTSEENCE 193
Query: 201 DGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAAS 256
DGSLM+A MPSR E+TQ+T+TGEWS+ +E+++LCLDA AK+G +MRSCLKEAA+
Sbjct: 194 DGSLMVAYMPSRKEITQVTMTGEWSSSRASESLELCLDACAKIGDVMRSCLKEAAA 249
>gi|255578123|ref|XP_002529931.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
gi|223530561|gb|EEF32439.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
Length = 180
Score = 302 bits (773), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 146/181 (80%), Positives = 164/181 (90%), Gaps = 4/181 (2%)
Query: 1 MAAKPSTTTTAKATYSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSA 60
MA+KP + T TYSP P+RK+RPPIF DVDW+RPD R F +CRPA+FRTGAVN+A
Sbjct: 1 MASKPGSAPT---TYSPT-PSRKSRPPIFKHYDVDWVRPDGRSFSECRPAYFRTGAVNAA 56
Query: 61 SGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSS 120
+GSAYAEFGNTKVIVSVFGPRESKKAMMYS++GRLNCNVSYTTF+TPVRGQGSD K+FSS
Sbjct: 57 AGSAYAEFGNTKVIVSVFGPRESKKAMMYSDVGRLNCNVSYTTFSTPVRGQGSDCKEFSS 116
Query: 121 MLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVS 180
MLHK+LEGAI+LETFPKTTVDVFALVLESGGSDL V++SCAS+ALADAGIMMYDLVA VS
Sbjct: 117 MLHKSLEGAIMLETFPKTTVDVFALVLESGGSDLSVIVSCASLALADAGIMMYDLVAGVS 176
Query: 181 V 181
V
Sbjct: 177 V 177
>gi|4972074|emb|CAB43881.1| putative protein [Arabidopsis thaliana]
gi|7269603|emb|CAB81399.1| putative protein [Arabidopsis thaliana]
Length = 244
Score = 262 bits (670), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 146/297 (49%), Positives = 175/297 (58%), Gaps = 90/297 (30%)
Query: 1 MAAKPSTTTTAKATYSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSA 60
MAAKP T TYSP ++R PIF SD+DW RPD RGFHQCRPA T
Sbjct: 1 MAAKPGAAT---PTYSP-KIVGRSRLPIFKDSDLDWSRPDGRGFHQCRPACKNT------ 50
Query: 61 SGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSS 120
F ++K ++ G+DHK++SS
Sbjct: 51 -------FDSSKFLI------------------------------------GTDHKEYSS 67
Query: 121 MLHKALEGAIILETFPKTTVDVFALVLESGGS---------------------------- 152
MLHKALEG I++ETFPKTTVDVFALVLESGG
Sbjct: 68 MLHKALEGVIMMETFPKTTVDVFALVLESGGKCDCLLVRLDIRGVDYGSNLLDCCLAFSD 127
Query: 153 ---------DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGS 203
DL V+ISCAS+ALADAGIMMYDL+ +VSVSC+GK+L+IDPV EEE +DGS
Sbjct: 128 FLQWYCIAGDLSVLISCASLALADAGIMMYDLITAVSVSCIGKSLMIDPVTEEEGCEDGS 187
Query: 204 LMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDEQE 260
M+ CMPSRYE+TQLT+TGEW+TP+ NEAMQLCLDAS+KLG+IMR CLK++AS E
Sbjct: 188 FMMTCMPSRYEITQLTITGEWTTPNINEAMQLCLDASSKLGEIMRDCLKQSASASDE 244
>gi|26452638|dbj|BAC43402.1| unknown protein [Arabidopsis thaliana]
Length = 140
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 108/140 (77%), Positives = 127/140 (90%)
Query: 121 MLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVS 180
MLHKALEG I++ETFPKTTVDVFALVLESGGSDL V+ISCAS+ALADAGIMMYDL+ +VS
Sbjct: 1 MLHKALEGVIMMETFPKTTVDVFALVLESGGSDLSVLISCASLALADAGIMMYDLITAVS 60
Query: 181 VSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDAS 240
VSC+GK+L+IDPV EEE +DGS M+ CMPSRYE+TQLT+TGEW+TP+ NEAMQLCLDAS
Sbjct: 61 VSCIGKSLMIDPVTEEEGCEDGSFMMTCMPSRYEITQLTITGEWTTPNINEAMQLCLDAS 120
Query: 241 AKLGKIMRSCLKEAASDEQE 260
+KLG+IMR CLK++AS E
Sbjct: 121 SKLGEIMRDCLKQSASASDE 140
>gi|307109085|gb|EFN57324.1| hypothetical protein CHLNCDRAFT_21722, partial [Chlorella
variabilis]
Length = 223
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 101/210 (48%), Positives = 146/210 (69%), Gaps = 1/210 (0%)
Query: 47 CRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFAT 106
CR A +TG ++ ASGSAYAEFG+TKV+V V+GPR+S++ + YS GR+NC+V +FA+
Sbjct: 1 CR-AVLKTGVISQASGSAYAEFGHTKVMVGVYGPRQSERRVGYSEQGRVNCDVKLASFAS 59
Query: 107 PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALA 166
RGQ ++ ++ S+ L ALE A L +FPK +VDVF LVLE+GG +L V + A++ALA
Sbjct: 60 RQRGQSAEERELSAALQTALEAAADLASFPKASVDVFVLVLEAGGGELGVAATAAALALA 119
Query: 167 DAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWST 226
DAG+ M+DLVA+ SVS + +L++DP +E ++G L++A MP+ EVTQ+ G WS+
Sbjct: 120 DAGVEMFDLVAACSVSRVQGSLVLDPTADEVFREEGGLVLALMPTSSEVTQMVSRGRWSS 179
Query: 227 PHFNEAMQLCLDASAKLGKIMRSCLKEAAS 256
E M+L + A+L R CLKEAA+
Sbjct: 180 SQLREGMELAMGGCAQLDAAARQCLKEAAA 209
>gi|302834702|ref|XP_002948913.1| hypothetical protein VOLCADRAFT_89262 [Volvox carteri f.
nagariensis]
gi|300265658|gb|EFJ49848.1| hypothetical protein VOLCADRAFT_89262 [Volvox carteri f.
nagariensis]
Length = 238
Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 98/223 (43%), Positives = 135/223 (60%), Gaps = 3/223 (1%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D RG + R F +T ++ A GSAY EFG TKV+V VFGPR+S+ + +++ GRLNC
Sbjct: 13 RADGRGLEEFRTVFIKTRVLSQAKGSAYVEFGTTKVMVGVFGPRQSEVKLGFTDTGRLNC 72
Query: 98 NVSYTTFAT---PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDL 154
V T+FA+ GQ + L +ALE ++ L+ FPK DV A++LE+GGSDL
Sbjct: 73 EVRLTSFASHKLAKSGQTQLESSAAQGLQQALEPSVQLDKFPKAVFDVSAMILEAGGSDL 132
Query: 155 PVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYE 214
V+I+ ASVALADAG+ +YDLV +V VS LL+DP LEE ++G +++ MP E
Sbjct: 133 AVLITAASVALADAGVELYDLVPAVQVSKQRGLLLLDPSLEESGAEEGGMLVGLMPELNE 192
Query: 215 VTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASD 257
VT L V G W+ E ++L L +L MR L AA +
Sbjct: 193 VTALNVRGLWADSEMQEGLELALGGCGQLKAAMREALLTAAVE 235
>gi|440802076|gb|ELR23015.1| 3' exoribonuclease family, domain 1 domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 274
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 111/250 (44%), Positives = 152/250 (60%), Gaps = 10/250 (4%)
Query: 14 TYSPI-DPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTK 72
T+ P+ DP K RP F V+ R D R + RP F +TG ++ A+GSAY E TK
Sbjct: 18 TFVPLADPAPK-RPDAFV---VEGKRLDGRSPDEFRPVFLKTGVISQAAGSAYIEMNQTK 73
Query: 73 VIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFAT--PVRGQGSD--HKDFSSMLHKALEG 128
VI V+GPR++ K + YS G+LNC TFA R SD K+ S ++ +ALE
Sbjct: 74 VICGVYGPRQTPKTV-YSEKGKLNCFFKLATFAENGERRKYVSDKEEKELSMLMVQALEV 132
Query: 129 AIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNL 188
++ LETFPK+ +DVF LVLE G + I+ AS+ALADAGI MYDLVAS SV + ++
Sbjct: 133 SLRLETFPKSELDVFVLVLEESGGMVGAAITAASLALADAGIEMYDLVASCSVGVVDSHI 192
Query: 189 LIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMR 248
L+DP + EE +LM+A MPS E+TQ+ TGE EA++LCLD +K+ ++MR
Sbjct: 193 LLDPSIAEEKAAQSNLMVAIMPSANEITQMLQTGEIEHTKAPEAIELCLDGCSKIYQMMR 252
Query: 249 SCLKEAASDE 258
L E A+ +
Sbjct: 253 QNLLETAAQK 262
>gi|384245391|gb|EIE18885.1| ribosomal protein S5 domain 2-like protein [Coccomyxa
subellipsoidea C-169]
Length = 195
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 92/207 (44%), Positives = 135/207 (65%), Gaps = 13/207 (6%)
Query: 52 FRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQ 111
+ G ++ A+GSAYAEFGNTKVI V+GPRE+++ ++S GRL C+
Sbjct: 1 MKPGTLSQAAGSAYAEFGNTKVIAGVYGPREAERKEVFSTEGRLQCD------------- 47
Query: 112 GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIM 171
+ ++ S L ALE A+ L+TFPK VD++ LVLES G+DL V I AS+ALADAGI
Sbjct: 48 NDEERELSVQLQTALEAAVRLQTFPKANVDIYCLVLESAGADLAVCICAASLALADAGIE 107
Query: 172 MYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNE 231
M D+V++ SVS + +LL+DP ++E +DGS ++A MPS V+Q+ +TG+WS +E
Sbjct: 108 MEDMVSACSVSRVDGHLLLDPTIDEAYREDGSALLAMMPSANAVSQVVLTGQWSNAQASE 167
Query: 232 AMQLCLDASAKLGKIMRSCLKEAASDE 258
+QLC+ A++ MR +KEAA+ +
Sbjct: 168 VLQLCMGGCAQIDAYMRQSIKEAAAGQ 194
>gi|66472734|ref|NP_001018322.1| exosome complex component MTR3 [Danio rerio]
gi|123905166|sp|Q6P0I8.2|EXOS6_DANRE RecName: Full=Exosome complex component MTR3; AltName: Full=Exosome
component 6; AltName: Full=mRNA transport regulator 3
homolog
gi|63101434|gb|AAH95173.1| Exosome component 6 [Danio rerio]
gi|68262418|gb|AAH65602.2| Exosome component 6 [Danio rerio]
gi|182890526|gb|AAI64622.1| Exosc6 protein [Danio rerio]
Length = 271
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 96/261 (36%), Positives = 142/261 (54%), Gaps = 24/261 (9%)
Query: 17 PIDPTRKTRPPIFSGSDVDWLRPDS-----------RGFHQCRPAFFRTGAVNSASGSAY 65
P+D T++ R P S S + +L PD RG RP F R G V+ A GSAY
Sbjct: 2 PVD-TKRIRGPEESQSPLLFLSPDKAPKAPSSRQGVRGNGDVRPVFARCGLVSQAKGSAY 60
Query: 66 AEFGNTKVIVSVFGPRES-KKAMMYSNIGRLNCNVSYTTFATPVRG---QGSDHKDFSSM 121
E GNTK+I SV+GP+E+ ++ GRL C+ F+ RG QGS+ +D S+
Sbjct: 61 IEAGNTKIICSVYGPKETERRDETDMKTGRLVCDFRLAPFSCVKRGAWIQGSEERDLSAT 120
Query: 122 LHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSV 181
L ++L + L +P++ +DV +VLE+ GS L ++CAS+ALADAGI MYD+V ++
Sbjct: 121 LMESLRPGVCLHRYPRSQIDVNVMVLENDGSVLAHAVTCASMALADAGIEMYDIVLGCTL 180
Query: 182 SCLGKNLLIDPVLEEE--SYQD------GSLMIACMPSRYEVTQLTVTGEWSTPHFNEAM 233
G L+DP EE S+Q+ G + +A +P+ +V+ L GE EAM
Sbjct: 181 RQSGNACLVDPSYAEECGSWQEGYGDNQGCVTLALLPNLNQVSGLNADGEMREDTLTEAM 240
Query: 234 QLCLDASAKLGKIMRSCLKEA 254
+ C+D KL +++ L A
Sbjct: 241 RTCMDGCHKLYPVVQQALTRA 261
>gi|328773049|gb|EGF83086.1| hypothetical protein BATDEDRAFT_84610 [Batrachochytrium
dendrobatidis JAM81]
Length = 253
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 141/228 (61%), Gaps = 11/228 (4%)
Query: 30 SGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMY 89
+G D RPD Q RP + + G + A+GSAY E GN KVI +V+GPR+S +
Sbjct: 28 TGQRADKRRPD-----QIRPIYTKAGTIPQANGSAYIETGNLKVICAVYGPRQSSSRQLS 82
Query: 90 SNIGRLNCNVSYTTFATPVR-GQGSD--HKDFSSMLHKALEGAIILETFPKTTVDVFALV 146
S+ G L C+ + F+ R G D K+FS +L +AL +I LE +PK T+ VF +V
Sbjct: 83 SSTGTLQCDFKFAPFSGEKRKGYAKDDQEKEFSMVLEQALTPSIRLENYPKFTIQVFVIV 142
Query: 147 LESGG--SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLL-IDPVLEEESYQDGS 203
LE+ G S L ISCAS+ALA+AGI M D+VA+ S++ G+++L +D L+EE QDG+
Sbjct: 143 LENDGSMSALAAAISCASLALANAGIEMLDMVAASSIAYFGESMLCLDVSLKEEMVQDGA 202
Query: 204 LMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
++++ MPS EVT L TG +T +A++L +DA +++ I++ L
Sbjct: 203 MLVSYMPSLNEVTHLIQTGLATTSQCTKAIELGVDACSQIHTILQEAL 250
>gi|291000756|ref|XP_002682945.1| 3'-5' exoribonuclease/RNA-binding protein-like protein [Naegleria
gruberi]
gi|284096573|gb|EFC50201.1| 3'-5' exoribonuclease/RNA-binding protein-like protein [Naegleria
gruberi]
Length = 300
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 134/240 (55%), Gaps = 21/240 (8%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGN-TKVIVSVFGPRESKKAMMYSNIGRLN 96
R D+R + R F + G + A GSAY E+ N TKVI SV+GPR+ +S+IG +
Sbjct: 65 RQDNRTCDKFRNVFMQVGVIKQARGSAYMEYQNGTKVICSVYGPRQISARNEFSDIGAIQ 124
Query: 97 CNVSYTTFATPVRGQGSDHK----------------DFSSMLHKALEGAIILETFPKTTV 140
C FA Q S+++ + S L +ALE +I L+ +PK+ +
Sbjct: 125 CEYRVANFAY----QSSNNQSTFLNNSSNNNRRHHVENSIHLREALEVSIRLDKYPKSVI 180
Query: 141 DVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQ 200
DV+ +L+ GS L ISCAS+ALA+AGI MYD+V++ + S L ++++DP E Y
Sbjct: 181 DVYCFILQDDGSALSAAISCASLALANAGIEMYDMVSACTTSELEGHIIVDPTNLEYKYA 240
Query: 201 DGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDEQE 260
G ++ A M + +VTQL+ G+ S EAM LC+D +KL ++M+ CL +S ++
Sbjct: 241 SGGMVCAYMSNLNQVTQLSQVGDMSYQKIGEAMDLCIDGCSKLNQLMQQCLLNNSSTNEK 300
>gi|410925956|ref|XP_003976445.1| PREDICTED: exosome complex component MTR3-like [Takifugu rubripes]
Length = 268
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 92/235 (39%), Positives = 132/235 (56%), Gaps = 17/235 (7%)
Query: 38 RPDSRGFHQC--RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIGR 94
R D R Q RP F R G V+ A GSAY E GNTK++ V+GPRE+ +K GR
Sbjct: 34 RADGRRRDQVDVRPVFVRCGLVSQAKGSAYIEAGNTKLMCCVYGPRETERKDETDMKCGR 93
Query: 95 LNCNVSYTTFATPVRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
L ++ + F+ P RG QGS KDFS+ML ++L+ A+ L +P++ ++V +VLE+ G
Sbjct: 94 LTTDMRFAPFSCPERGSWIQGSQEKDFSTMLQESLQPAVCLHKYPRSQIEVNMMVLENSG 153
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEE-------SYQDGSL 204
S L I+CAS+ALADAGI MYDLV S+ G + + DP EE S GSL
Sbjct: 154 SVLAHAITCASLALADAGIEMYDLVLGCSLRQNGASYVADPTSAEENDRGPDQSRNQGSL 213
Query: 205 MIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKL----GKIMRSCLKEAA 255
+A +PS +++ L GE S ++ C++ KL +++ C+ AA
Sbjct: 214 TVAFLPSLNQISGLQSDGEMSEDTLTAGVRTCIEGCYKLYPLVQQVLSRCVSRAA 268
>gi|299470099|emb|CBN78128.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 270
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 84/222 (37%), Positives = 123/222 (55%), Gaps = 7/222 (3%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPR-ESKKAMMYSNIGRLN 96
R D R + R + G V A+GSAY EF +TKVI +V+GP ++ +S G+L
Sbjct: 43 REDGRAPYDMRQVYMDVGVVAHATGSAYVEFNHTKVICAVYGPHAQTGGDSAFSEEGQLQ 102
Query: 97 CNVSYTTFATP------VRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
C+ SY FA P G+ D ++ S++L + LE +I + K+ V V +VL++
Sbjct: 103 CDFSYAPFAMPGGRRETRGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQAD 162
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
G +L V +CAS+ALADAGI +YDLV + SV G +++DP EEE G + IA MP
Sbjct: 163 GGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEEKSGAGVMTIALMP 222
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
+VTQ G + EA++LC D + K+M + LK
Sbjct: 223 GSQQVTQWWQEGRFDGQKVAEALELCTDGCGCVHKMMEAKLK 264
>gi|328875321|gb|EGG23686.1| hypothetical protein DFA_05820 [Dictyostelium fasciculatum]
Length = 307
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 133/244 (54%), Gaps = 36/244 (14%)
Query: 41 SRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVS 100
+R Q R F +TG V+ ASGSAY E NTKVI SV GPR S K ++ + + +C +
Sbjct: 54 NRSEEQFRQIFMKTGVVSQASGSAYIEIENTKVICSVHGPRASPKTELFES-AKFSCELK 112
Query: 101 YTTFATPVRGQGSDH------KDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDL 154
+ +FA P G+ D+ KD S L +++ GAI LE +PKT +DV+ +VL G L
Sbjct: 113 FASFARP--GERIDYMESAKEKDLSINLRQSIIGAIRLEKYPKTVIDVYVMVLNDDGGVL 170
Query: 155 PVVISCASVALADAGIMMYDLVASVSVSCLGKN-------------------------LL 189
I+ AS+ALADAG+ MYD+V++ S C+ +L
Sbjct: 171 VAAITAASMALADAGVEMYDMVSACSSICIRNQSISNGSNGSGSGNGSSGAAPKVQSSIL 230
Query: 190 IDPVLEEESYQD--GSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIM 247
+DP L+EE +D G +++A MPS E+TQ+ TGE S + + + LC+D K+ IM
Sbjct: 231 LDPTLQEEESKDSLGCVVVAKMPSLNEITQIIQTGELSYNNTIDGIDLCIDGCDKIYSIM 290
Query: 248 RSCL 251
+ L
Sbjct: 291 KQNL 294
>gi|348504192|ref|XP_003439646.1| PREDICTED: exosome complex component MTR3-like [Oreochromis
niloticus]
Length = 274
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/230 (38%), Positives = 131/230 (56%), Gaps = 13/230 (5%)
Query: 38 RPDSRGFHQC--RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIGR 94
R D R Q RP F R G V+ A GSAY E GNTK++ V+GPRE+ +K GR
Sbjct: 34 RADGRRRDQVDVRPVFVRCGLVSQAKGSAYLEAGNTKLMCCVYGPRETDRKDETDMKCGR 93
Query: 95 LNCNVSYTTFATPVRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
L ++ + F+ P RG QGS KDFS MLH++L+ AI L +P++ ++V +VLE+ G
Sbjct: 94 LTTDMRFAPFSCPERGSWIQGSQDKDFSLMLHESLQPAICLHKYPRSQIEVSVMVLENSG 153
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEES-------YQDGSL 204
S L ++CAS+ALADAGI MYDLV S+ G + ++DP EE+ G L
Sbjct: 154 SVLAHAVTCASLALADAGIEMYDLVLGCSMRQDGTSYVVDPSYMEENGCSSVSCENQGGL 213
Query: 205 MIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEA 254
+A +PS +++ L G+ + ++ C++ KL +++ L +A
Sbjct: 214 TVAFLPSLNQISGLQSDGDMTEETLTAGVRTCIEGCYKLYPVIQRALTKA 263
>gi|66824695|ref|XP_645702.1| hypothetical protein DDB_G0271396 [Dictyostelium discoideum AX4]
gi|60473889|gb|EAL71828.1| hypothetical protein DDB_G0271396 [Dictyostelium discoideum AX4]
Length = 217
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 125/206 (60%), Gaps = 7/206 (3%)
Query: 52 FRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG- 110
+ G V+ SGS+Y E NTKV+ ++ GPR ++K ++ +LNC + YTTF++
Sbjct: 1 MKIGVVSQGSGSSYVEMENTKVLCTIHGPRATQKTELFET-AKLNCELKYTTFSSTTEKI 59
Query: 111 ---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALAD 167
+ S KD S ++ +++ G+I LE +PKT +D++ LVL G+ L I+ A++ALAD
Sbjct: 60 DYVENSKEKDLSLLISQSIIGSIRLEKYPKTAIDIYILVLNDDGNVLVASITAATMALAD 119
Query: 168 AGIMMYDLVASVSVSCLGKN-LLIDP-VLEEESYQDGSLMIACMPSRYEVTQLTVTGEWS 225
AG+ M+D+V+S SVSC N LIDP LEE ++++A MPS E+TQ+ TGE
Sbjct: 120 AGVEMFDMVSSCSVSCTKDNRTLIDPTTLEETIPSSSTVLVAKMPSLNEITQIIQTGELQ 179
Query: 226 TPHFNEAMQLCLDASAKLGKIMRSCL 251
+ E + LC+D K+ IM+ L
Sbjct: 180 YTNVLECVDLCIDGCDKIYSIMKQNL 205
>gi|156398683|ref|XP_001638317.1| predicted protein [Nematostella vectensis]
gi|156225437|gb|EDO46254.1| predicted protein [Nematostella vectensis]
Length = 268
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 87/222 (39%), Positives = 126/222 (56%), Gaps = 5/222 (2%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
D R D R + RP F R G V+ A GSAY E NTKVI +++GPRE+ + +S GR
Sbjct: 33 DGCRQDGRRPDELRPMFLRAGVVSQAKGSAYIEMKNTKVICAIYGPREAPRRQEFSMKGR 92
Query: 95 LNCNVSYTTFATPVRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
L C + F+ R Q ++ K+ S ++ +ALE A+ LE FPK VD++ VLE+ G
Sbjct: 93 LTCEFKFAPFSCIYRRKHIQDAEEKENSYLVVQALEPAVCLEKFPKAQVDIYITVLENDG 152
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEE--ESYQDGSLMIACM 209
S L I CASVALA AGI M DLV++ ++ ++L+DP +E S G M+A +
Sbjct: 153 SALSAGIICASVALAMAGIEMLDLVSACTMVQSDNHILMDPCEKEIHSSSASGHTMVAIL 212
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
PS V+ L GE + +A+ C++ A++ IM+ L
Sbjct: 213 PSLNVVSGLVQEGELTQDAATKALSSCIEGCARILPIMQQAL 254
>gi|427785073|gb|JAA57988.1| Putative exosomal 3'-5' exoribonuclease complex subunit rrp41
[Rhipicephalus pulchellus]
Length = 284
Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 86/225 (38%), Positives = 123/225 (54%), Gaps = 11/225 (4%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R F RP F +TG V+ A GSAY E GNTKV+ SV+GPRE + ++ G++NC
Sbjct: 34 RHDGRQFGDVRPIFLKTGVVSQAKGSAYIEMGNTKVVCSVYGPREIARRKDFTFKGQINC 93
Query: 98 NVSYTTFATPVRGQGSDHKD---FSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDL 154
+ ++ P+R Q + + +S +L KAL + L FPK+TVDVF LV+E+ G L
Sbjct: 94 EFRFAQYSCPIRRQHLNDGEALHYSQLLEKALAPVVCLHKFPKSTVDVFVLVIENDGGAL 153
Query: 155 PVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEE----SYQD----GSLMI 206
I+ A +ALADAGI MYD+V S+ G LIDP EE +D G + +
Sbjct: 154 ACAITTAGLALADAGIDMYDVVVGCSLRQDGSTCLIDPSYNEEVAPVEAKDDLSFGRMTL 213
Query: 207 ACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
MP+ +VT L GE M+ + AS ++ +++ L
Sbjct: 214 GFMPALQQVTALVQDGELDAASVVSDMKALIAASHQIYPLVQDVL 258
>gi|348674314|gb|EGZ14133.1| hypothetical protein PHYSODRAFT_512336 [Phytophthora sojae]
Length = 252
Score = 149 bits (377), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 89/232 (38%), Positives = 128/232 (55%), Gaps = 10/232 (4%)
Query: 27 PIFSGSDVDWLRPD-SRGF-HQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK 84
P+ + D R D +RG + R F + GAV+ A+GSAY E G T+V+ +V+GPR
Sbjct: 15 PVPADDDAPMERLDKTRGSSDEMRRPFMQLGAVSGAAGSAYVEMGRTRVVCAVYGPRTDT 74
Query: 85 KAMM-YSNIGRLNCNVSYTTFATPV----RGQGSDHKDFSSMLHKALEGAIILETFPKTT 139
+A +S G+L C+V Y FA + RGQ D + S+++ +AL A++L PK
Sbjct: 75 RARREFSKDGQLVCDVKYAPFADKLTRRERGQDPDEMELSAIVEEALAPAVMLHKLPKCI 134
Query: 140 VDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESY 199
V VF VLE G I+CAS+ALADA + MYD+V + S + ++++DP EEE
Sbjct: 135 VSVFVTVLEDEGGVFAAAINCASLALADAAVEMYDVVTASSAGIVNGSVVLDPSREEEQR 194
Query: 200 QDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
DG L +A MPS VT + G+ EA+ LC DA +MR+ L
Sbjct: 195 GDGKLALAYMPSMGRVTYMLQAGQIHHTQLQEAVDLCTDACT---GVMRTLL 243
>gi|301099917|ref|XP_002899049.1| exosome complex exonuclease MTR3-like protein [Phytophthora
infestans T30-4]
gi|262104361|gb|EEY62413.1| exosome complex exonuclease MTR3-like protein [Phytophthora
infestans T30-4]
Length = 252
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 115/199 (57%), Gaps = 5/199 (2%)
Query: 46 QCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMM-YSNIGRLNCNVSYTTF 104
+ R F + GAV+ A+GSAY E G T+V+ +V+GPR +A +S G+L C+V Y F
Sbjct: 36 EMRRPFMQLGAVSGAAGSAYVELGRTRVLCAVYGPRTDTRARREFSKDGQLVCDVKYAPF 95
Query: 105 ATPV----RGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISC 160
A + RGQ D + S+++ +AL A++L PK + VF +LE G L ++C
Sbjct: 96 ADKLTRRERGQDPDEMELSAIVEEALAPAVMLHKLPKCIISVFVTILEDDGGVLAAALNC 155
Query: 161 ASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTV 220
AS+ALADA + MYD+V + S + ++++DP EEE DG L +A MPS VT +
Sbjct: 156 ASLALADAAVEMYDVVTASSAGIVNGSVVLDPSREEEQRGDGKLALAYMPSMGRVTYMLQ 215
Query: 221 TGEWSTPHFNEAMQLCLDA 239
G+ EA+ LC DA
Sbjct: 216 AGKIHHTQLQEAVDLCTDA 234
>gi|291237650|ref|XP_002738745.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
Length = 273
Score = 147 bits (370), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 87/249 (34%), Positives = 134/249 (53%), Gaps = 12/249 (4%)
Query: 21 TRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGP 80
T K P + + D R D R + RP F R G +++A GSAY E +TKV +V+GP
Sbjct: 23 TEKDNPDLVND---DGTRHDGRKPNDIRPIFLRCGIISNAKGSAYIETKDTKVTCAVYGP 79
Query: 81 RESKKAMMYSNIGRLNCNVSYTTFATPVRGQ---GSDHKDFSSMLHKALEGAIILETFPK 137
R+ + + G L C+ + TF+ R Q S+ KD S ++ +A+E A+ LE +P+
Sbjct: 80 RQVVRREDFKLTGTLTCDFKFATFSCQKRQQHMQSSNEKDLSLIVLQAMEPAVCLEKYPR 139
Query: 138 TTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEE 197
+D+F VL++GGS L I+CAS ALA AGI MYD+V S +G L+DP +EE
Sbjct: 140 AQIDIFITVLQNGGSALSAAITCASAALAAAGIEMYDVVVGCSTRQIGNTCLVDPAYDEE 199
Query: 198 ------SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
+GSL + MPS +V+ GE T +++ C+D ++ ++R CL
Sbjct: 200 YNSKTGGKNNGSLCLGLMPSLNQVSAFIECGELETEILMQSIHSCVDGCMRIYPVVRQCL 259
Query: 252 KEAASDEQE 260
++ Q+
Sbjct: 260 TKSIKSLQK 268
>gi|255076363|ref|XP_002501856.1| predicted protein [Micromonas sp. RCC299]
gi|226517120|gb|ACO63114.1| predicted protein [Micromonas sp. RCC299]
Length = 232
Score = 147 bits (370), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 92/227 (40%), Positives = 132/227 (58%), Gaps = 16/227 (7%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAM--MYSNIGRL 95
R D R Q RP F +TG ++ A+GSAY E TKV+ V+GPR+ + + + GRL
Sbjct: 5 REDGRSAEQMRPIFVKTGVISQAAGSAYVELDKTKVMCGVYGPRQGGPGIDKVEFDRGRL 64
Query: 96 NCNVSYTTFATPV-RG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ +V TFAT RG QG ++FSS++H+AL GA++ ETFPKTTVDVFA VLE+ G
Sbjct: 65 DVDVKLATFATSGPRGKVAQGDAEREFSSIVHRALSGAVMTETFPKTTVDVFATVLEANG 124
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKN------LLIDPVLEEESYQDGSLM 205
S+L I+ AS AL +AG+ M DLV+ +C G LL+DP EE+ + +
Sbjct: 125 SELCATIAAASAALCEAGVAMRDLVS----ACTGGGADGPNALLLDPARGEEAAAEAGVT 180
Query: 206 IACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
+A M E +Q+ TG W ++A+QL A++ +R L+
Sbjct: 181 LAYMCRLGEASQVVATGTWDGESLDDAVQLAASGCARVDAALREALR 227
>gi|47210411|emb|CAF91679.1| unnamed protein product [Tetraodon nigroviridis]
Length = 276
Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 85/214 (39%), Positives = 123/214 (57%), Gaps = 10/214 (4%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIGRLNCNVSYTTFAT 106
RP F R G + A GSAY E G TK++ V+GPRE+ +K GRL +V + F+
Sbjct: 46 RPVFVRCGLGSQAKGSAYMEAGATKLLCCVYGPRETERKDETDMRCGRLTADVRFAPFSC 105
Query: 107 PVRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASV 163
P RG QGS +DFSSML ++L+ A+ L +P++ ++V +VLE+GGS L ++CASV
Sbjct: 106 PERGSWIQGSQDRDFSSMLLESLQPAVCLHRYPRSQIEVHLVVLENGGSVLAHAVTCASV 165
Query: 164 ALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEES------YQDGSLMIACMPSRYEVTQ 217
ALADAGI MYDLV S+ G + + DP EES G L +A +PS +++
Sbjct: 166 ALADAGIQMYDLVLGCSLRQDGASFVADPTYAEESGRAGPGGPRGGLTVAFLPSLNQISG 225
Query: 218 LTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
L GE + ++ C++ KL ++R L
Sbjct: 226 LRSDGEMAEDTLRAGVRTCIEGCYKLYPVVRQVL 259
>gi|432862333|ref|XP_004069803.1| PREDICTED: exosome complex component MTR3-like [Oryzias latipes]
Length = 272
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/233 (37%), Positives = 129/233 (55%), Gaps = 11/233 (4%)
Query: 38 RPDSRGFHQC--RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIGR 94
R D R Q RP F R G V+ A GSAY E G+TK++ SV+GPRE+ +K GR
Sbjct: 34 RADGRQRDQVDVRPVFVRCGLVSQAKGSAYIEAGDTKLLCSVYGPRETERKDETDMKCGR 93
Query: 95 LNCNVSYTTFATPVRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
L ++ + F+ P RG QGS K+FS ML ++L+ A+ L +P++ ++V +VLE+ G
Sbjct: 94 LTTDMRFAPFSCPERGSWIQGSQDKNFSLMLQESLQPALCLHKYPRSQIEVNVMVLENSG 153
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVL-----EEESYQDGSLMI 206
S I+CAS+ALADAGI MYDLV S+ G + ++DP S G L +
Sbjct: 154 SVQAHAITCASLALADAGIEMYDLVLGCSIRQDGSSYVVDPTYSEESNWSSSEHQGGLTV 213
Query: 207 ACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDEQ 259
A +PS +V+ L GE + ++ C++ KL +++ L +A Q
Sbjct: 214 AFLPSLNQVSGLQSDGEMAEETLTAGIRTCIEGCYKLYPVIQQALVKAVRRAQ 266
>gi|384491910|gb|EIE83106.1| hypothetical protein RO3G_07811 [Rhizopus delemar RA 99-880]
Length = 255
Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 136/239 (56%), Gaps = 14/239 (5%)
Query: 26 PPIFSGS--------DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV 77
PPIF + + + R D+RG R F + G V A+GSAY E GNTKV +V
Sbjct: 14 PPIFKETKELQNEILNNERKRLDNRGLEDLRAIFLKPGLVTQANGSAYIEVGNTKVACAV 73
Query: 78 FGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG---QGSDHKDFSSMLHKALEGAIILET 134
+GPR+ KK+ N G LNC+ ++ F+ R + + K+FS +L +AL A+ LE
Sbjct: 74 YGPRQLKKSSFSQN-GTLNCDFKFSPFSCVKRRSAVRDPEEKEFSQILIQALSPAVRLEL 132
Query: 135 FPKTTVDVFALVLESGGSD--LPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDP 192
PK+T+D++ VLES G+ L I +S+ALADAGI M D V + S +L+D
Sbjct: 133 LPKSTIDIYINVLESDGTSSCLAAAIVASSIALADAGIEMLDQVTACSSVFAQDQILMDG 192
Query: 193 VLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
EES +DGSL+++ MPS EVT + G+ + ++A++ C+D +K+ +M + L
Sbjct: 193 TEREESQKDGSLVLSFMPSLNEVTHILQIGQSDSVMTSKAVEQCIDGCSKIYSVMSNAL 251
>gi|346469375|gb|AEO34532.1| hypothetical protein [Amblyomma maculatum]
Length = 287
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 122/226 (53%), Gaps = 12/226 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R F RP F +TG V+ A GSAY E GNTKV+ SV+GPRE + ++ G++NC
Sbjct: 35 RHDGRQFGDIRPIFLKTGVVSQAKGSAYVEMGNTKVVCSVYGPREIARRKDFTYKGQINC 94
Query: 98 NVSYTTFATPVRGQ---GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDL 154
+ ++ +R Q S+ FS +L +AL + L FPK+TVDVF VLE+ G L
Sbjct: 95 EFRFAQYSCQIRRQHLNDSEALHFSQLLEEALAPVVCLHKFPKSTVDVFVYVLENDGGAL 154
Query: 155 PVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGS---------LM 205
I+ A +ALADAGI MYD+V S+ G L+DP EE+ G+ +
Sbjct: 155 ASAITTAGLALADAGIDMYDVVIGCSLRQDGSTCLLDPTYREETAPVGAENIDRGFGRMT 214
Query: 206 IACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
+A MP+ +V L G+ +++ ++A ++ +++ L
Sbjct: 215 LAFMPALQQVAALVQDGDLDAATVVSDLRVLMNACHEIYPLVQDVL 260
>gi|405978444|gb|EKC42833.1| Exosome complex exonuclease MTR3 [Crassostrea gigas]
Length = 426
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 89/259 (34%), Positives = 134/259 (51%), Gaps = 25/259 (9%)
Query: 18 IDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPA-------FFRTGAVNSASGSAYAEFGN 70
+ R+ PPI S R D R + + A + G ++ A GSAY E
Sbjct: 168 VQRKRELFPPIKSS------RLDPRLEQRIQAANQKGSNKILKAGIISQARGSAYIEQNE 221
Query: 71 TKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVR---GQGSDHKDFSSMLHKALE 127
TKV+ +V+GPRE K +S G+L C + TF+ VR Q ++ +D+S L ALE
Sbjct: 222 TKVMCAVYGPREVTKKEEFSMKGQLTCEFKFATFSCRVRRQYQQDNEERDYSCQLQDALE 281
Query: 128 GAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKN 187
A+ ++ FPK V+V+ VL++ GS L ++CASVALA+AGI MYDLV S
Sbjct: 282 PAVRMDKFPKAQVNVYVTVLQNDGSPLAASLTCASVALANAGIEMYDLVVGCSARITPSE 341
Query: 188 LLIDPVLEEESYQ--------DGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDA 239
+ IDP E E Y+ +GS+ + MPS +V+ +T GE N+ + C+D
Sbjct: 342 VFIDPT-ESEDYKAENDNEAGNGSVTLGLMPSLNQVSAITSKGEVEFELLNKGTKQCVDV 400
Query: 240 SAKLGKIMRSCLKEAASDE 258
KL +++ + +A D+
Sbjct: 401 CQKLYPVLQQAVAKAVEDK 419
>gi|346469377|gb|AEO34533.1| hypothetical protein [Amblyomma maculatum]
Length = 287
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 121/226 (53%), Gaps = 12/226 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R F RP F +TG V+ A GSAY E GNTKV+ SV+GPRE + ++ G++NC
Sbjct: 35 RHDGRQFGDIRPIFLKTGVVSQAKGSAYVEMGNTKVVCSVYGPREIARRKDFTYKGQINC 94
Query: 98 NVSYTTFATPVRGQ---GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDL 154
+ ++ +R Q S+ FS +L +AL + L FPK+TVDVF VLE+ G L
Sbjct: 95 EFRFAQYSCQIRRQHLNDSEALHFSQLLEEALAPVVCLHKFPKSTVDVFVYVLENDGGAL 154
Query: 155 PVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGS---------LM 205
I+ A +ALADAGI MYD+V S+ G L+DP EE+ G+ +
Sbjct: 155 ASAITTAGLALADAGIDMYDVVIGCSLRQDGSTCLLDPTYREETAPVGAENIDRGFGRMT 214
Query: 206 IACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
+A MP+ +V L G+ ++ ++A ++ +++ L
Sbjct: 215 LAFMPALQQVAALVQDGDLDAATVVSDLRALMNACHEIYPLVQDVL 260
>gi|213513832|ref|NP_001134673.1| Exosome complex exonuclease MTR3 [Salmo salar]
gi|209735138|gb|ACI68438.1| Exosome complex exonuclease MTR3 [Salmo salar]
Length = 277
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 125/226 (55%), Gaps = 13/226 (5%)
Query: 42 RGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIGRLNCNVS 100
RG R F R G ++ A GSAY E GNTK+I V+GPRE+ +K GRL ++
Sbjct: 42 RGQVDVRSVFVRCGLISQAKGSAYIEAGNTKLICCVYGPRETERKDETDMKSGRLITDMR 101
Query: 101 YTTFATPVRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVV 157
+ F+ RG QGSD KD S ML ++L + L+ +P++ ++V +VLE+ G+ L
Sbjct: 102 FAPFSCRERGSWIQGSDEKDLSLMLLESLRPGVCLQKYPRSQIEVNVMVLENDGAVLAHA 161
Query: 158 ISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQD---------GSLMIAC 208
++CAS+ALADAGI MYDLV S+ G LIDP EE+ + GSL +A
Sbjct: 162 VTCASMALADAGIEMYDLVLGCSIRQEGATYLIDPTFLEENGCNLASGSRENLGSLTVAF 221
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEA 254
+PS +++ L GE ++ C++ KL +++ L +A
Sbjct: 222 LPSLNQISGLQSDGEMGEDTLTGGVRTCIEGCFKLYPVIQQALSKA 267
>gi|198434569|ref|XP_002126010.1| PREDICTED: similar to Exosome complex exonuclease MTR3 (mRNA
transport regulator 3 homolog) (Exosome component 6)
[Ciona intestinalis]
Length = 276
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 125/234 (53%), Gaps = 15/234 (6%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS-N 91
D + R D R Q R F + G + A GSAY E TKVI SV+GP++ + + N
Sbjct: 30 DDEEKRADGRYVTQPRDVFLQCGVITQAKGSAYFEMNKTKVICSVYGPKDIEMREEFQIN 89
Query: 92 IGRLNCNVSYTTFATPVRGQ---GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
G+L C + Y +++P G G+ + S +L +A+ + L+ +PK+ +DV+ +VLE
Sbjct: 90 KGKLKCELKYAPYSSPKHGDHIPGASDVEKSDILLEAISSGVCLQRYPKSQIDVYVIVLE 149
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKN-LLIDPVLEEE---------- 197
GS +P I+ ASVAL DAGI MYD++ + S+ G++ +IDP EE
Sbjct: 150 DDGSVMPAAITAASVALVDAGIEMYDVITASSIRIAGQDTFIIDPTSSEEFSPLNLEKSN 209
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
G +M+A +PS +V+ + +G EA++ C ++ L I+R CL
Sbjct: 210 DLNQGMVMVALLPSINQVSSVVSSGHLECNVLQEAIRSCRYSAQNLHSIVRKCL 263
>gi|409096213|ref|ZP_11216237.1| exosome complex exonuclease Rrp41 [Thermococcus zilligii AN1]
Length = 249
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 126/233 (54%), Gaps = 4/233 (1%)
Query: 25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-S 83
RP D + R D R H+ R G + +A GSAY E+GN K+I +V+GPRE
Sbjct: 4 RPEGLKLIDENGKRIDGRKKHELRQIRMEVGVLKNADGSAYIEWGNNKIIAAVYGPREIH 63
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTV 140
K + L + F+ R + G D + + S ++H AL+ A+ILE FP+T +
Sbjct: 64 PKHLQRPETAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIHGALQPALILEMFPRTVI 123
Query: 141 DVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQ 200
DVF VL++ I+ AS+ALADAGI M DLVA+ + + +++DP EE++Y
Sbjct: 124 DVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIDGEIVLDPNKEEDNYG 183
Query: 201 DGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
+ + +A MP + ++T L + G + F EA++L + + + + R LKE
Sbjct: 184 EADVPVAVMPMKNDITLLQMDGYLTKEEFLEAVRLAMKGAKAVYQKQREALKE 236
>gi|225715750|gb|ACO13721.1| Exosome complex exonuclease MTR3 [Esox lucius]
Length = 277
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 122/226 (53%), Gaps = 13/226 (5%)
Query: 42 RGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRLNCNVS 100
RG R F R G ++ A GSAY E GNTK+I V+GPRE +K GRL ++
Sbjct: 42 RGQVDVRSVFVRCGLISQAKGSAYIEAGNTKLICCVYGPREMERKDETDMKSGRLMTDMR 101
Query: 101 YTTFATPVRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVV 157
+ F+ RG QGSD KD S ML ++L + L +P++ ++V +VLE+ GS L
Sbjct: 102 FAPFSCRERGSWIQGSDEKDLSLMLLESLRPGVCLHKYPRSQIEVNVMVLENDGSVLAHA 161
Query: 158 ISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQD---------GSLMIAC 208
++CAS+ALADAGI MYDLV S+ LIDP EE+ + GSL +A
Sbjct: 162 VTCASMALADAGIEMYDLVLGCSIRQESATYLIDPTYLEENGCNLASGSGDNFGSLTVAF 221
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEA 254
+PS +++ L GE ++ C++ KL +++ L +A
Sbjct: 222 LPSLNQISGLQSDGEMGEDILTGGVRTCIEGCFKLYPVIQQALTKA 267
>gi|91087143|ref|XP_975288.1| PREDICTED: similar to exosomal 3-5 exoribonuclease complex subunit
Rrp41-like protein [Tribolium castaneum]
Length = 282
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 125/228 (54%), Gaps = 14/228 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R + R F +TG V+ A GSAY E TKVIVSVF PRE YS+ G + C
Sbjct: 42 RADGRTSTEHRKIFLKTGVVSQAKGSAYIELDQTKVIVSVFDPREIPNKTDYSSKGEIYC 101
Query: 98 NVSYTTFATPVR---GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDL 154
+ F+ R Q ++ + FS+++ +ALE A+ FP VD++A+VL + G+ L
Sbjct: 102 EFKFAPFSCHKRRLHQQDAEEQQFSAIMKQALESAVFRHEFPNFQVDIYAMVLHNDGAAL 161
Query: 155 PVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESY-----------QDGS 203
I+ A VALA AGI MYDL+ SV+++ G +LL+DP LEEE G
Sbjct: 162 SAAITAAGVALAHAGIPMYDLITSVTLAVQGNHLLVDPTLEEERLCQVPLFKEEENNHGI 221
Query: 204 LMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
++++ + + +++Q +G S + +++ +A+ + +++ CL
Sbjct: 222 VVLSVLATHEQISQFYQSGYLSYACLSSGIEMLTNAAKDIVTLVKKCL 269
>gi|260785852|ref|XP_002587974.1| hypothetical protein BRAFLDRAFT_124886 [Branchiostoma floridae]
gi|229273129|gb|EEN43985.1| hypothetical protein BRAFLDRAFT_124886 [Branchiostoma floridae]
Length = 1444
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 120/210 (57%), Gaps = 10/210 (4%)
Query: 52 FRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQ 111
G V+ A+GSAY E G TKVI +V+GPRE + ++ GRL C + + TFA R Q
Sbjct: 1208 LHAGVVSQATGSAYIEMGQTKVIAAVYGPREIARREEFTMKGRLCCELKFATFACRRRRQ 1267
Query: 112 ---GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADA 168
+ KD + ++ +ALE A+ L+ FPK+ VDV+ VL+ GS L I+CA+ LADA
Sbjct: 1268 HIQDNQEKDGALIVLQALEPAVCLDRFPKSQVDVYITVLQDDGSALAAAITCAAAGLADA 1327
Query: 169 GIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGS-------LMIACMPSRYEVTQLTVT 221
G+MMYD+VA SV G+ L+DP + EE Q+G + + +PS +V+ LT+
Sbjct: 1328 GVMMYDIVAGCSVRQCGERQLLDPSVGEELSQEGESAEDHGMVTVGLLPSLNQVSALTLD 1387
Query: 222 GEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
G +A++ C+ + I++ CL
Sbjct: 1388 GHLQQQTAVQAVKTCIGGCQGIYPILKDCL 1417
>gi|18977940|ref|NP_579297.1| exosome complex exonuclease Rrp41 [Pyrococcus furiosus DSM 3638]
gi|397652061|ref|YP_006492642.1| exosome complex exonuclease Rrp41 [Pyrococcus furiosus COM1]
gi|29336822|sp|Q8U0L9.1|ECX1_PYRFU RecName: Full=Probable exosome complex exonuclease 1
gi|18893710|gb|AAL81692.1| ribonuclease ph (rph) [Pyrococcus furiosus DSM 3638]
gi|393189652|gb|AFN04350.1| exosome complex exonuclease Rrp41 [Pyrococcus furiosus COM1]
Length = 250
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 125/225 (55%), Gaps = 4/225 (1%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSN 91
D + R D R ++ RP + G + +A+GSAY E+G K+I +V+GPRE K + +
Sbjct: 12 DENGRRLDGRKKYELRPIKMKVGVLKNANGSAYIEWGKNKIIAAVYGPREIHPKHLQRPD 71
Query: 92 IGRLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
L + F+ R + G D + + S ++ ALE A+ILE FP+T +DVF VL+
Sbjct: 72 RAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIRGALEPALILEMFPRTAIDVFIEVLQ 131
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ I+ AS+ALADAGI M DLVA+ S + +++D EE++Y + + +A
Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDLVAACSAGKIEGEIVLDLNKEEDNYGEADVPVAI 191
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
MP + ++T L + G + F EA++L + + + + R LKE
Sbjct: 192 MPIKNDITLLQMDGYLTKEEFIEAVKLAIKGAKAVYQKQREALKE 236
>gi|321469683|gb|EFX80662.1| hypothetical protein DAPPUDRAFT_50975 [Daphnia pulex]
Length = 227
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 118/212 (55%), Gaps = 10/212 (4%)
Query: 52 FRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFA-TPVRG 110
+TG ++ A GSAY E GNTK++ V+GPRE +K +S G+L C + F+ RG
Sbjct: 1 LKTGIISQAKGSAYIEQGNTKLVCGVYGPREVQKKSDFSLNGQLFCEFKFAPFSCQKRRG 60
Query: 111 QGSDHKDF--SSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADA 168
D+++ S +L +ALE A+ L FPK V+V +V+E+ GS L ++CAS+ALA A
Sbjct: 61 HQQDNEELVLSGLLREALEAAVCLHKFPKAQVEVNVMVIENDGSPLAAALTCASLALASA 120
Query: 169 GIMMYDLVASVSVSCLGKNLLIDPVLEEE-------SYQDGSLMIACMPSRYEVTQLTVT 221
I MYDL+ SV + K L+DP +EE + +L + MPS ++V+
Sbjct: 121 SIPMYDLMIGTSVRQIPKLFLLDPTKDEEWQPELNHDENNSNLTVGFMPSTHQVSAYVHE 180
Query: 222 GEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
G T + ++L + K+ +++ CLKE
Sbjct: 181 GVSKTEDLEQMLKLATEYCLKVQPVVQLCLKE 212
>gi|375082088|ref|ZP_09729158.1| exosome complex exonuclease Rrp41 [Thermococcus litoralis DSM 5473]
gi|374743301|gb|EHR79669.1| exosome complex exonuclease Rrp41 [Thermococcus litoralis DSM 5473]
Length = 247
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 126/233 (54%), Gaps = 4/233 (1%)
Query: 25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-S 83
RP D + R D R ++ RP G + SA GSAY E+G K++ +V+GPRE
Sbjct: 4 RPEGLKLIDENGKRLDGRKKYELRPIKMEVGVLKSADGSAYVEWGKNKILAAVYGPREIH 63
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTV 140
K + + L + F+ R + G D + + S ++ ALE A+ILE FP+T++
Sbjct: 64 PKHLQKPDRAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPAVILELFPRTSI 123
Query: 141 DVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQ 200
DVF VL++ I+ AS+ALADAGI M DLVA+ + + +++D EE++Y
Sbjct: 124 DVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIDGEIVLDLNKEEDNYG 183
Query: 201 DGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
+ + +A MP + ++T L + G + F EA++L + + + + R LKE
Sbjct: 184 EADVPVAIMPIKNDITLLQMDGYLTKEEFLEAVRLAIKGAKAVYQKQREALKE 236
>gi|14591333|ref|NP_143411.1| exosome complex exonuclease Rrp41 [Pyrococcus horikoshii OT3]
gi|29336584|sp|O59223.1|ECX1_PYRHO RecName: Full=Probable exosome complex exonuclease 1
gi|3257978|dbj|BAA30661.1| 249aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 249
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 126/225 (56%), Gaps = 4/225 (1%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSN 91
D + R D R ++ RP + G + +A+GSAY E+G K+I +V+GPRE K + +
Sbjct: 12 DENGRRIDGRKKYELRPIKMKVGVLKNANGSAYIEWGRNKIIAAVYGPRELHSKHLQRPD 71
Query: 92 IGRLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
L + F+ R + G D + + S ++ ALE A+ILE FP+T++DVF VL+
Sbjct: 72 RAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTSIDVFIEVLQ 131
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ I+ AS+ALADAGI M DLVA+ + + +++D EE++Y + + +A
Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVAI 191
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
MP + ++T L + G + F EA++L + + + + R LKE
Sbjct: 192 MPLKNDITLLQMDGYLTKEEFIEAVRLAIKGAKAVYQKQREALKE 236
>gi|347524281|ref|YP_004781851.1| exosome complex exonuclease 1 [Pyrolobus fumarii 1A]
gi|343461163|gb|AEM39599.1| exosome complex exonuclease 1 [Pyrolobus fumarii 1A]
Length = 248
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 121/237 (51%), Gaps = 7/237 (2%)
Query: 23 KTRPP---IFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFG 79
K PP I + +R D R + RP G +++A GSAY EFG T+VI +V+G
Sbjct: 3 KREPPVPLITKTEEGRIVRHDGRAPDELRPIRMEVGVLSNADGSAYVEFGRTRVIAAVYG 62
Query: 80 PRE-SKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETF 135
PRE K M + + C F+T R + + + S ++ +ALE + E +
Sbjct: 63 PREVHPKHMALPDRALIRCRYHMAPFSTDERKSPAPTRREIELSKVIREALEPVVFTELY 122
Query: 136 PKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLE 195
P+TT+D+F V+E+ G ++ AS+ALADAG+ M DLVA V+V + L++D
Sbjct: 123 PRTTIDIFIEVIEADGGTRTAAVTAASLALADAGVQMRDLVAGVAVGKVQGVLVLDIDQL 182
Query: 196 EESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
E+ Y + + +A PS VT L + G S F EAM L + K+ R L+
Sbjct: 183 EDEYGEADMPVAMAPSLGWVTLLQLNGVLSREEFKEAMALARKGIEAIYKMQREALR 239
>gi|325185608|emb|CCA20090.1| exosome complex exonuclease MTR3like protein putativ [Albugo
laibachii Nc14]
Length = 251
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 121/231 (52%), Gaps = 8/231 (3%)
Query: 37 LRPDS--RGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMM-YSNIG 93
LR D Q R + + G +++ASGSAY E TKVI +V+GPR + + + G
Sbjct: 21 LRADQTRSSMDQIRATYMQVGVIHNASGSAYVELQGTKVICAVYGPRNNPRGRRKFHEGG 80
Query: 94 RLNCNVSYTTFATPVR----GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+L C+V + FA R GQ D D S ++ KAL AI L+ PK V F ++L+S
Sbjct: 81 QLICDVKFAPFAERNRTRNAGQDPDEIDLSQIVTKALLPAIFLDKLPKCVVSCFVVILQS 140
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACM 209
GS+L I CAS+ALADA I M DLV + + + LL+D EE G+ M+A +
Sbjct: 141 DGSELATAIMCASLALADAAIEMRDLVTACNAGIVDDKLLVDLCTSEERMSQGNTMLAFL 200
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLC-LDASAKLGKIMRSCLKEAASDEQ 259
PS + T + G + E + +C + S+ L + M+ L + +++
Sbjct: 201 PSLQKSTFVMQQGTMTHAQVEEMIDVCSIACSSVLNESMKVALTQKVEEDR 251
>gi|389852857|ref|YP_006355091.1| exosome complex exonuclease Rrp41 [Pyrococcus sp. ST04]
gi|388250163|gb|AFK23016.1| exosome complex exonuclease Rrp41 [Pyrococcus sp. ST04]
Length = 249
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 125/225 (55%), Gaps = 4/225 (1%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSN 91
D + R D R ++ RP + G + +A+GSAY E+G K+I +V+GPRE K + +
Sbjct: 12 DENGRRIDGRKKYELRPIKMKVGVLKNANGSAYIEWGRNKIIAAVYGPREIHPKHLQRPD 71
Query: 92 IGRLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
L + F+ R + G D + + S ++ ALE A+ILE FP+T +D+F VL+
Sbjct: 72 RAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDIFIEVLQ 131
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ I+ AS+ALADAGI M DLVA+ + + +++D EE++Y + + +A
Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVAI 191
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
MP + ++T L + G + F EA++L + + + + R LKE
Sbjct: 192 MPLKNDITLLQMDGYLTKEEFIEAVKLAIKGAKAVYQKQREALKE 236
>gi|15678710|ref|NP_275826.1| exosome complex exonuclease Rrp41 [Methanothermobacter
thermautotrophicus str. Delta H]
gi|29336573|sp|O26779.1|ECX1_METTH RecName: Full=Probable exosome complex exonuclease 1
gi|295321490|pdb|2WNR|B Chain B, The Structure Of Methanothermobacter Thermautotrophicus
Exosome Core Assembly
gi|295321492|pdb|2WNR|D Chain D, The Structure Of Methanothermobacter Thermautotrophicus
Exosome Core Assembly
gi|295321494|pdb|2WNR|F Chain F, The Structure Of Methanothermobacter Thermautotrophicus
Exosome Core Assembly
gi|2621768|gb|AAB85188.1| ribonuclease PH [Methanothermobacter thermautotrophicus str. Delta
H]
Length = 240
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 120/221 (54%), Gaps = 4/221 (1%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRL 95
+R D R F + RP G + A GS+Y EFG K++V+V+GPRE++ + + + +
Sbjct: 16 VREDGRAFDELRPLKIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVI 75
Query: 96 NCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
C + F+ R + G D + + S + +AL A+ILE FP++ +DVF VLE+ G
Sbjct: 76 RCRYNMAPFSVEERKRPGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEAEGG 135
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSR 212
I+ ASVALADAGI M D+V + + +G +++D EE+ + +A +P
Sbjct: 136 TRCAGITAASVALADAGIPMRDMVVACAAGKVGDQVVLDLSEEEDKEGQADVPVAILPRT 195
Query: 213 YEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
E+T L G + F A+ L ++ ++ ++ + L++
Sbjct: 196 REITLLQSDGNLTPEEFERALDLAVEGCLRIHEVQKEALRK 236
>gi|170087298|ref|XP_001874872.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650072|gb|EDR14313.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 255
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 127/228 (55%), Gaps = 10/228 (4%)
Query: 18 IDPTRKTRPPIFSGSDV-DW---LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV 73
I+ ++ PPIF + W + +R RP F + G +N A+GSAY E NTK+
Sbjct: 10 INGPEESNPPIFEDEETPTWNVGMPRRNRASVDIRPIFLQPGLINQATGSAYIETQNTKI 69
Query: 74 IVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG---QGSDHKDFSSMLHKALEGAI 130
+VFGPR++K + ++ GRLN +V + F+ R + ++ + + +H+A+ ++
Sbjct: 70 ACAVFGPRQAKN-VAFNEKGRLNVDVKFAPFSCDRRRAPMRDAEDRSIAMAIHQAISSSV 128
Query: 131 ILETFPKTTVDVFALVLESGGSDLPVV--ISCASVALADAGIMMYDLVASVSVSCLGKNL 188
L+ PK+ +D+F ++ES G + V + AS AL DAGI ++ LVAS S + +G+++
Sbjct: 129 RLDVLPKSVIDIFITIVESDGIEGCVAAGVIVASTALTDAGIEIFGLVASCSAAAVGEDI 188
Query: 189 LIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLC 236
+DP L E G+L+++CMP+ V+ + TG +T M C
Sbjct: 189 WLDPSLRESQESRGTLVLSCMPALSTVSSIWQTGNMNTGDVLACMDAC 236
>gi|388494738|gb|AFK35435.1| unknown [Lotus japonicus]
Length = 93
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 61/79 (77%), Positives = 67/79 (84%), Gaps = 1/79 (1%)
Query: 182 SCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASA 241
SCL KNL+IDP+ EEE+ QDGS MI CMPSRYE+TQLTVTGEWSTP NE MQLCLDA A
Sbjct: 16 SCLSKNLVIDPISEEENCQDGSTMITCMPSRYEITQLTVTGEWSTPKINEGMQLCLDACA 75
Query: 242 KLGKIMRSCLKEAASDEQE 260
KL K+MRSCLKE ASD Q+
Sbjct: 76 KLAKVMRSCLKE-ASDSQD 93
>gi|14520826|ref|NP_126301.1| exosome complex exonuclease Rrp41 [Pyrococcus abyssi GE5]
gi|29337010|sp|Q9V119.1|ECX1_PYRAB RecName: Full=Probable exosome complex exonuclease 1
gi|170292234|pdb|2PNZ|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Udp And Gmp
gi|170292236|pdb|2PO0|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Adp In Double Conformation
gi|170292239|pdb|2PO1|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With A Single Stranded 10-Mer Poly(A) Rna
gi|170292241|pdb|2PO2|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Cdp
gi|5458042|emb|CAB49532.1| rph ribonuclease PH, exosome complex exonuclease [Pyrococcus abyssi
GE5]
gi|380741368|tpe|CCE70002.1| TPA: exosome complex exonuclease Rrp41 [Pyrococcus abyssi GE5]
Length = 249
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 124/225 (55%), Gaps = 4/225 (1%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSN 91
D + R D R ++ RP G + +A+GSAY E+G K+I +V+GPRE K + +
Sbjct: 12 DENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPD 71
Query: 92 IGRLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
L + F+ R + G D + + S ++ ALE A+ILE FP+T +DVF VL+
Sbjct: 72 RAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQ 131
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ I+ AS+ALADAGI M DLVA+ + + +++D EE++Y + + +A
Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVAI 191
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
MP + ++T L + G + F EA++L + + + + R LKE
Sbjct: 192 MPLKNDITLLQMDGYLTKDEFIEAVKLAIKGAKAVYQKQREALKE 236
>gi|196014350|ref|XP_002117034.1| hypothetical protein TRIADDRAFT_61054 [Trichoplax adhaerens]
gi|190580256|gb|EDV20340.1| hypothetical protein TRIADDRAFT_61054 [Trichoplax adhaerens]
Length = 240
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 126/229 (55%), Gaps = 19/229 (8%)
Query: 49 PAFF-----RTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTT 103
P F+ RTGAV+ A GSAY E NTK+I +V+GPRE K ++ + C + + T
Sbjct: 8 PKFYDRLVCRTGAVSQAVGSAYIELRNTKIICAVYGPREVAKKQEFNIQATVACELKFAT 67
Query: 104 FATPVRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISC 160
F+ R Q S K++S ++ +AL+ + L+ +PK+ +D+F VL++ GS L I+
Sbjct: 68 FSCRRRRRHIQDSQEKEYSQIIVQALQPVVRLDKYPKSQIDIFITVLQNDGSVLGGAITA 127
Query: 161 ASVALADAGIMMYDLVASVSVSCLGKNLLIDPV-LEEES----------YQDGSLMIACM 209
ASVALAD+GI ++D+ + +G LIDP LEEE + ++ IA +
Sbjct: 128 ASVALADSGIEIFDVAIGCCLRQIGDLSLIDPTYLEEEGRLNNEEEDEIVTNANVTIALL 187
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDE 258
PS +V+ L + GE ++ CL+ ++ ++R CL ++ ++
Sbjct: 188 PSLNQVSALIMNGELDVDSTQRIIKDCLEGCIRIYPVVRECLTKSLEEK 236
>gi|304314830|ref|YP_003849977.1| exosome RNA binding protein [Methanothermobacter marburgensis str.
Marburg]
gi|302588289|gb|ADL58664.1| predicted exosome RNA binding protein [Methanothermobacter
marburgensis str. Marburg]
Length = 231
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 119/221 (53%), Gaps = 4/221 (1%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRL 95
+R D R F + RP G + A GS+Y EFG K++V+V+GPRE++ + + + +
Sbjct: 7 VREDGRAFDELRPLRIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVI 66
Query: 96 NCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
C + F+ R + G D + + S + +AL A+ILE FP++ +DVF VLE+ G
Sbjct: 67 RCRYNMAPFSVEERKRPGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEAEGG 126
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSR 212
I+ ASVALADAGI M D+V + + + +++D EE+ + +A +P
Sbjct: 127 TRCAGITAASVALADAGIPMRDMVVACAAGKVNDQVVLDLSEEEDKAGQADVPVAILPRT 186
Query: 213 YEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
E+T L G S F A+ L ++ ++ ++ + L++
Sbjct: 187 REITLLQSDGNLSDDEFERALDLAVEGCLRIHEVQKEALRK 227
>gi|325969194|ref|YP_004245386.1| exosome complex exonuclease 1 [Vulcanisaeta moutnovskia 768-28]
gi|323708397|gb|ADY01884.1| exosome complex exonuclease 1 [Vulcanisaeta moutnovskia 768-28]
Length = 246
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 121/221 (54%), Gaps = 7/221 (3%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRLN 96
R D R ++ RP G +++A GSA +GNT ++ +V+GPRE +K + + L
Sbjct: 15 RSDGRLPNEHRPVRMEVGVISNAEGSALVAYGNTVILAAVYGPREVPQKHLELPDKAILR 74
Query: 97 CNVSYTTFATPVRGQGS-----DHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
F+T G+ S + S ++ ALE +ILE FP+TT+DV+ VL++ G
Sbjct: 75 VRYHMIPFSTS-EGRKSPTPSRREIEISKVIRTALEPVVILERFPRTTIDVYIEVLQADG 133
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS 211
S I+ AS+ALADAGI M DL+ VSV + +++D E+ Y +G + +A M
Sbjct: 134 STRVTGITAASLALADAGIPMRDLLVGVSVGKVSGTIIVDLNQLEDQYGEGDMPLAIMYG 193
Query: 212 RYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
R +T + GEW+ N+A++L A+ ++ ++ + LK
Sbjct: 194 RGLITLMQADGEWTPTEVNQAVELAFKAAEQIYRLQKDVLK 234
>gi|315229927|ref|YP_004070363.1| exosome complex exonuclease 1 [Thermococcus barophilus MP]
gi|315182955|gb|ADT83140.1| exosome complex exonuclease 1 [Thermococcus barophilus MP]
Length = 246
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 123/225 (54%), Gaps = 4/225 (1%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSN 91
D + R D R ++ RP G + +A GSAY E+G K++ +V+GPRE K + +
Sbjct: 11 DENGRRIDGRKKYELRPIKMEVGVLKNADGSAYIEWGKNKILAAVYGPREIHPKHLQRPD 70
Query: 92 IGRLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
L + F+ R + G D + + S ++ ALE AIILE FP+T +DVF VL+
Sbjct: 71 RAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPAIILELFPRTAIDVFIEVLQ 130
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ I+ AS+ALADAGI M DLV++ + + +++D EE++Y + + +A
Sbjct: 131 ADAGTRVAGITAASLALADAGIPMKDLVSACAAGKIEGQIVLDLNKEEDNYGEADVPVAI 190
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
MP + ++T L + G + F EA++L + + + + R LKE
Sbjct: 191 MPIKNDITLLQMDGYLTREEFLEAVRLAIKGAKAVYQKQREALKE 235
>gi|332157779|ref|YP_004423058.1| exosome complex exonuclease Rrp41 [Pyrococcus sp. NA2]
gi|331033242|gb|AEC51054.1| exosome complex exonuclease Rrp41 [Pyrococcus sp. NA2]
Length = 249
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 123/225 (54%), Gaps = 4/225 (1%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSN 91
D + R D R ++ RP G + +A GSAY E+G K+I +V+GP+E K + +
Sbjct: 12 DENGRRIDGRKKYELRPIKMEVGVLKNADGSAYIEWGKNKIIAAVYGPKELHPKHLQRPD 71
Query: 92 IGRLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
L + F+ R + G D + + S ++ ALE A+ILE FP+T +DVF VL+
Sbjct: 72 RAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQ 131
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ I+ AS+ALADAGI M DLVA+ + + +++D EE++Y + + +A
Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVAI 191
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
MP R ++T L + G + F EA++L + + + + R LK+
Sbjct: 192 MPLRNDITLLQMDGYLTKEEFIEAVKLAIKGAKAVYQKQREALKD 236
>gi|212223175|ref|YP_002306411.1| exosome complex exonuclease Rrp41 [Thermococcus onnurineus NA1]
gi|226740341|sp|B6YSI2.1|ECX1_THEON RecName: Full=Probable exosome complex exonuclease 1
gi|212008132|gb|ACJ15514.1| 3'-5' exoribonuclease [Thermococcus onnurineus NA1]
Length = 249
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 123/225 (54%), Gaps = 4/225 (1%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSN 91
D + R D R ++ RP G + +A GSAY E+G K++ +V+GPRE K + +
Sbjct: 12 DENGRRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIHPKHLQRPD 71
Query: 92 IGRLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
L + F+ R + G D + + S ++ ALE A+ILE FP+T +D+F VL+
Sbjct: 72 RAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPALILEMFPRTAIDIFIEVLQ 131
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ I+ AS+ALADAGI M DLVA+ + + +++D EE++Y + + +A
Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVAI 191
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
MP + ++T L + G + F EA++L + + + + R LKE
Sbjct: 192 MPLKNDITLLQMDGYLTRDEFIEAVRLAIKGAKAVYQKQREALKE 236
>gi|312137048|ref|YP_004004385.1| ribosomal RNA-processing protein rrp41/ski6 [Methanothermus
fervidus DSM 2088]
gi|311224767|gb|ADP77623.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanothermus
fervidus DSM 2088]
Length = 236
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 124/223 (55%), Gaps = 4/223 (1%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNI 92
V+++R D R +++ RP + G + A GS+Y E G+ K++ +V+GPR+ + + +
Sbjct: 8 VEFVRKDGRAYNELRPVKIKAGVLKRADGSSYIELGSNKILAAVYGPRDPQITKIKRPDR 67
Query: 93 GRLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ C + F+ R + G D + + S + +AL +IILE FP++++D+F VLE+
Sbjct: 68 AIIRCRYNMAPFSVEERKRPGPDRRSIEISKITAEALAPSIILEKFPRSSIDIFIEVLEA 127
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACM 209
G I+ ASVALADAGI + DLV + S + ++++D EE+ + + +A M
Sbjct: 128 DGGTRCAGITAASVALADAGIPLRDLVVACSAGKVNGHVVLDLTEEEDKEGEADVPVAIM 187
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
P E+T L V GE + +A+ L ++ + K+ + ++
Sbjct: 188 PRTKEITLLQVDGELTPEELEKAIDLAIEGCMSINKLQKKSIE 230
>gi|270009587|gb|EFA06035.1| hypothetical protein TcasGA2_TC008865 [Tribolium castaneum]
Length = 300
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 119/214 (55%), Gaps = 14/214 (6%)
Query: 52 FRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVR-- 109
+TG V+ A GSAY E TKVIVSVF PRE YS+ G + C + F+ R
Sbjct: 74 LKTGVVSQAKGSAYIELDQTKVIVSVFDPREIPNKTDYSSKGEIYCEFKFAPFSCHKRRL 133
Query: 110 -GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADA 168
Q ++ + FS+++ +ALE A+ FP VD++A+VL + G+ L I+ A VALA A
Sbjct: 134 HQQDAEEQQFSAIMKQALESAVFRHEFPNFQVDIYAMVLHNDGAALSAAITAAGVALAHA 193
Query: 169 GIMMYDLVASVSVSCLGKNLLIDPVLEEESY-----------QDGSLMIACMPSRYEVTQ 217
GI MYDL+ SV+++ G +LL+DP LEEE G ++++ + + +++Q
Sbjct: 194 GIPMYDLITSVTLAVQGNHLLVDPTLEEERLCQVPLFKEEENNHGIVVLSVLATHEQISQ 253
Query: 218 LTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
+G S + +++ +A+ + +++ CL
Sbjct: 254 FYQSGYLSYACLSSGIEMLTNAAKDIVTLVKKCL 287
>gi|119719494|ref|YP_919989.1| exosome complex exonuclease 1 [Thermofilum pendens Hrk 5]
gi|119524614|gb|ABL77986.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermofilum pendens
Hrk 5]
Length = 245
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 115/215 (53%), Gaps = 4/215 (1%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSN 91
D + R D R + RP G + +A GSAY E GN KV+ +V+GPRE + +
Sbjct: 11 DENGRRVDGRLPDEMRPLRVEAGVLKNADGSAYVELGNNKVLAAVYGPREPMPRHEALPD 70
Query: 92 IGRLNCNVSYTTFATPVRG--QGSDHK-DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
L C S F+ R Q S + + S ++ +AL A+ L +P+T+++V+ +LE
Sbjct: 71 RAILKCRYSMLPFSVAERKSPQPSRREIELSKVIREALAPAVFLNEYPRTSIEVYIHILE 130
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ G I SVALADAGI M DLVA+++V +G L++D E+ Y DG + IA
Sbjct: 131 ADGGTRTASIIAGSVALADAGIAMRDLVAAIAVGKIGNVLVLDINGIEDQYGDGDMPIAM 190
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKL 243
MP R E+T L G ++ EA++L A K+
Sbjct: 191 MPQRGEITLLQADGVFTPQEIEEALRLAQKAFQKI 225
>gi|148642302|ref|YP_001272815.1| exosome complex exonuclease Rrp41 [Methanobrevibacter smithii ATCC
35061]
gi|148551319|gb|ABQ86447.1| ribonuclease PH, Rph [Methanobrevibacter smithii ATCC 35061]
Length = 234
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 120/228 (52%), Gaps = 4/228 (1%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
+ +R D R +++ RP G + A GSAY E G K++V+V+GPRES + ++ N G
Sbjct: 4 EMIREDGRKYNELRPIKIEAGVLERADGSAYLEVGGNKILVAVYGPRESYIRRLLEPNTG 63
Query: 94 RLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ C + F+ R + G D + + S + AL A++LE +P++ VD++ V+E+
Sbjct: 64 VIRCRYNMAPFSVDDRKRPGPDRRSSEISKITADALRPALMLENYPRSMVDIYIEVIEAE 123
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
G I+ ASVAL DAGI M D+V + + +++D E+ + IA MP
Sbjct: 124 GGTRCAGITAASVALVDAGIPMKDIVVGCAAGKVNDEIILDLSEVEDKEGQADVPIAMMP 183
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDE 258
E+T L G+ S F EA+ L ++ K+ +I + L + S E
Sbjct: 184 RTGEITLLQSDGDLSQEEFEEAINLAMEGCRKVNEIQKEALMKKYSAE 231
>gi|350423078|ref|XP_003493378.1| PREDICTED: exosome complex component MTR3-like [Bombus impatiens]
Length = 273
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 121/228 (53%), Gaps = 14/228 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R ++ R F +TG V+ A GSAY E GNTKV+ SVF PRE Y G + C
Sbjct: 37 RSDKRTNNEMRKIFLKTGIVSQAKGSAYIELGNTKVVCSVFDPREVSNKNGYCAQGEIYC 96
Query: 98 NVSYTTFATPVRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDL 154
+ F+ R Q ++ K +S +L +ALE A+ L FP VDV+ +VL++ GS L
Sbjct: 97 EFKFAPFSCQKRKIHQQNAEEKQYSLILQRALEPAVCLHEFPNFQVDVYVMVLDNAGSSL 156
Query: 155 PVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEES-----------YQDGS 203
I AS ALA+AG+ M+ LV + ++ + L+DP EE+ + G+
Sbjct: 157 AAAIMAASTALANAGVPMFGLVTASTIGIYDNHYLMDPTDIEEAICNTQPDNQGDFNHGT 216
Query: 204 LMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
+ +A +P +++++ + G +T +A ++ A+ + +++ CL
Sbjct: 217 ITLASLPQHNQISEVFLIGSINTNSVVQATEILTTANKDICPVLQQCL 264
>gi|340727523|ref|XP_003402091.1| PREDICTED: exosome complex component MTR3-like [Bombus terrestris]
Length = 273
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 129/263 (49%), Gaps = 28/263 (10%)
Query: 17 PIDPTRKTRP----PIFSGSDVDWL----------RPDSRGFHQCRPAFFRTGAVNSASG 62
PID R P P SDVD R D R ++ R F + G V+ A G
Sbjct: 2 PIDQKRLNGPEVTVPYHIYSDVDEKSDEVKYDLSERSDKRTNNEMRKIFLKAGIVSQAKG 61
Query: 63 SAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFA---TPVRGQGSDHKDFS 119
SAY E GNTKV+ SVF PRE Y G + C + F+ V Q ++ K +S
Sbjct: 62 SAYIELGNTKVVCSVFDPREVSNKNSYYAQGEIYCEFKFAPFSCQKRKVHQQNAEEKQYS 121
Query: 120 SMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASV 179
+L +ALE A+ L FP VDV+ +VL++ GS L I AS ALA+AG+ M+ LV +
Sbjct: 122 LILQRALEPAVCLHEFPNFQVDVYVMVLDNAGSSLAAAIMAASTALANAGVPMFGLVTAS 181
Query: 180 SVSCLGKNLLIDPVLEEES-----------YQDGSLMIACMPSRYEVTQLTVTGEWSTPH 228
++ + L+DP EE+ + G + +A +P +++++ + G +T
Sbjct: 182 TIGIYDNHYLMDPTDIEEAICNTQPDNQGDFNHGIITLASLPQHNQISEVFLIGSINTNS 241
Query: 229 FNEAMQLCLDASAKLGKIMRSCL 251
+A ++ A+ + +++ CL
Sbjct: 242 VVQATEILTAANKDICPVLQQCL 264
>gi|288869794|ref|ZP_06409500.1| exosome complex exonuclease 1 [Methanobrevibacter smithii DSM 2374]
gi|288860272|gb|EFC92570.1| exosome complex exonuclease 1 [Methanobrevibacter smithii DSM 2374]
Length = 234
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 120/228 (52%), Gaps = 4/228 (1%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
+ +R D R +++ RP G + A GSAY E G K++V+V+GPRES + ++ N G
Sbjct: 4 EMIREDGRKYNELRPIKIEAGVLERADGSAYLEVGGNKILVAVYGPRESYIRRLLEPNTG 63
Query: 94 RLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ C + F+ R + G D + + S + AL A++LE +P++ VD++ V+E+
Sbjct: 64 VIRCRYNMAPFSVDDRKRPGPDRRSSEISKITADALRPALMLENYPRSMVDIYIEVIEAE 123
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
G I+ ASVAL DAGI M D+V + + +++D E+ + IA MP
Sbjct: 124 GGTRCAGITAASVALVDAGIPMKDIVVGCAAGKVNDKIVLDLSEVEDKEGQADVPIAMMP 183
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDE 258
E+T L G+ S F EA+ L ++ K+ +I + L + S E
Sbjct: 184 RTGEITLLQSDGDLSQEEFEEAINLAMEGCRKVNEIQKEALMKKYSAE 231
>gi|222444527|ref|ZP_03607042.1| hypothetical protein METSMIALI_00139 [Methanobrevibacter smithii
DSM 2375]
gi|222434092|gb|EEE41257.1| exosome complex exonuclease 1 [Methanobrevibacter smithii DSM 2375]
Length = 233
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 120/228 (52%), Gaps = 4/228 (1%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
+ +R D R +++ RP G + A GSAY E G K++V+V+GPRES + ++ N G
Sbjct: 3 EMIREDGRKYNELRPIKIEAGVLERADGSAYLEVGGNKILVAVYGPRESYIRRLLEPNTG 62
Query: 94 RLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ C + F+ R + G D + + S + AL A++LE +P++ VD++ V+E+
Sbjct: 63 VIRCRYNMAPFSVDDRKRPGPDRRSSEISKITADALRPALMLENYPRSMVDIYIEVIEAE 122
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
G I+ ASVAL DAGI M D+V + + +++D E+ + IA MP
Sbjct: 123 GGTRCAGITAASVALVDAGIPMKDIVVGCAAGKVNDKIVLDLSEVEDKEGQADVPIAMMP 182
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDE 258
E+T L G+ S F EA+ L ++ K+ +I + L + S E
Sbjct: 183 RTGEITLLQSDGDLSQEEFEEAINLAMEGCRKVNEIQKEALMKKYSAE 230
>gi|392566799|gb|EIW59974.1| mRNA transport regulator 3 [Trametes versicolor FP-101664 SS1]
Length = 261
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 128/244 (52%), Gaps = 16/244 (6%)
Query: 27 PIFSGSDVDWLR------PDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGP 80
PIF D R R RP + + G +N A+GSAY E TK+ +V+GP
Sbjct: 20 PIFEADDEQETRWKAGTPRKGRAARDIRPIYLKAGLINQANGSAYIETERTKIACAVYGP 79
Query: 81 RESKKAMMYSNIGRLNCNVSYTTFA-----TPVRGQGSDHKDFSSMLHKALEGAIILETF 135
R+SK +Y+ GRLN V + F+ P+R ++ + + + +AL A+ LE
Sbjct: 80 RQSK-TTVYNEKGRLNVEVKFAPFSCTKRRVPIRD--AEDRSVAVQIQQALASAVRLELL 136
Query: 136 PKTTVDVFALVLESGGSD--LPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPV 193
PK+T+D+F V+E+ G + + ASVALADAGI M LVAS S + +GK + +DP
Sbjct: 137 PKSTLDIFVTVIENDGIEGCIAAGSVAASVALADAGIEMLGLVASCSAAVVGKEIWMDPT 196
Query: 194 LEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
EE GS+++A +P+ +T + +G + + M+ C ++ A + +M L E
Sbjct: 197 EEESKLASGSVVLAGLPALGTITSVWQSGSMAPDEAIKCMEACQESCADIHTVMAQSLLE 256
Query: 254 AASD 257
A +
Sbjct: 257 KAQN 260
>gi|158300785|ref|XP_552338.3| AGAP011906-PA [Anopheles gambiae str. PEST]
gi|157013328|gb|EAL38841.3| AGAP011906-PA [Anopheles gambiae str. PEST]
Length = 308
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 108/199 (54%), Gaps = 11/199 (5%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
D R D R + R + + G V++A GSAY E GNTKVIVSVF PRE K + +G
Sbjct: 40 DGKRKDGRRLQESRKYYAKIGVVSTAKGSAYVELGNTKVIVSVFDPREIPKQNKFCELGE 99
Query: 95 LNCNVSYTTFATPVRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
L C++ ++ FA VR + + ++ L AL ++ FP +DVFA VLE G
Sbjct: 100 LFCDLKFSPFAPAVRKTHQTDARERSMTAALTSALNPSVCRHLFPNLQIDVFANVLEDDG 159
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESY--------QDGS 203
S L V I+ A +AL DA + M+D+V + + LG +++DP EEE+ G
Sbjct: 160 SALAVAITAAGLALGDACVPMFDIVTAATAGVLGDRVVMDPTAEEEALCLAGHTEENHGL 219
Query: 204 LMIACMPSRYEVTQLTVTG 222
+M+A +P+ +V ++ G
Sbjct: 220 VMLAKLPTLDQVPEIWQYG 238
>gi|57641569|ref|YP_184047.1| exosome complex exonuclease Rrp41 [Thermococcus kodakarensis KOD1]
gi|73919276|sp|Q5JIR6.1|ECX1_PYRKO RecName: Full=Probable exosome complex exonuclease 1
gi|57159893|dbj|BAD85823.1| exosome subunit Rrp41p homolog, 3'-5' exoribonuclease [Thermococcus
kodakarensis KOD1]
Length = 249
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 124/233 (53%), Gaps = 4/233 (1%)
Query: 25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-S 83
RP D + R D R ++ RP G + +A GSAY E+G KV+ +V+GPRE
Sbjct: 4 RPEGLKLIDENGKRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKVLAAVYGPREIH 63
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTV 140
K + + L + F+ R + G D + + S ++ ALE A++L FP+T +
Sbjct: 64 PKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPALLLHMFPRTAI 123
Query: 141 DVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQ 200
DVF +L++ I+ AS+ALADAGI M DLVA+ + + +++D EE++Y
Sbjct: 124 DVFIEILQADAGTRVAGITAASLALADAGIPMKDLVAACAAGKIDGEIVLDLNKEEDNYG 183
Query: 201 DGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
+ + +A MP + ++T L + G + F EA++L + + + + R LKE
Sbjct: 184 EADVPVAIMPLKNDITLLQMDGYLTKDEFLEAVRLAIKGAKAVYQKQREALKE 236
>gi|307594960|ref|YP_003901277.1| exosome complex exonuclease 1 [Vulcanisaeta distributa DSM 14429]
gi|307550161|gb|ADN50226.1| exosome complex exonuclease 1 [Vulcanisaeta distributa DSM 14429]
Length = 246
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 121/225 (53%), Gaps = 7/225 (3%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNI 92
V+ R D R ++ RP G + +A GSA +GNT ++ +V+GPRE +K + +
Sbjct: 11 VNGKRSDGRLPNEHRPVRMEVGVIKNAEGSALVAYGNTVILAAVYGPREVPQKHLELPDK 70
Query: 93 GRLNCNVSYTTFATPVRGQGS-----DHKDFSSMLHKALEGAIILETFPKTTVDVFALVL 147
L F+T G+ S + S ++ ALE +ILE FP+TT+DV+ VL
Sbjct: 71 AILRVRYHMAPFSTS-EGRKSPTPSRREIEISKVIRTALEPVVILERFPRTTIDVYIEVL 129
Query: 148 ESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIA 207
++ GS I+ AS+ALADAGI M DL+ VS+ + +++D E+ Y +G + +A
Sbjct: 130 QADGSTRVTGITAASLALADAGIPMRDLLVGVSIGKVSGTIVVDLNQLEDQYGEGDMPLA 189
Query: 208 CMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
M R +T + GEW+ N+A+ L A+ ++ ++ + LK
Sbjct: 190 IMYGRGLITLMQADGEWTPTEVNQALDLAFKAAEQIYRLEKETLK 234
>gi|223477909|ref|YP_002582206.1| Exosome complex exonuclease 1 [Thermococcus sp. AM4]
gi|214033135|gb|EEB73963.1| Exosome complex exonuclease 1 [Thermococcus sp. AM4]
Length = 248
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 124/233 (53%), Gaps = 4/233 (1%)
Query: 25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-S 83
RP D + R D R ++ R G + +A GSAY E+G K++ +V+GPRE
Sbjct: 3 RPEGLKLIDENGRRIDGRKKYELRKIHMEVGVLKNADGSAYIEWGKNKILAAVYGPREIH 62
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTV 140
K + + L + F+ R + G D + + S ++ ALE A+ILE FP+T V
Sbjct: 63 PKHLQRPDTAVLRVRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPALILEMFPRTVV 122
Query: 141 DVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQ 200
DVF VL++ I+ AS+ALADAG+ M DLVA+ + + +++D +E++Y
Sbjct: 123 DVFIEVLQADAGTRVAGITAASLALADAGVPMRDLVAACAAGKIDGEIVLDLNKDEDNYG 182
Query: 201 DGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
+ + +A MP + ++T L + G + F EA++L + + + + R LKE
Sbjct: 183 EADVPVAIMPLKNDITLLQMDGYLTKEEFIEAVKLAIKGAKAVYQKQREALKE 235
>gi|240104093|ref|YP_002960402.1| exosome complex exonuclease Rrp41 [Thermococcus gammatolerans EJ3]
gi|259645401|sp|C5A2B9.1|ECX1_THEGJ RecName: Full=Probable exosome complex exonuclease 1
gi|239911647|gb|ACS34538.1| 3'-5' exoribonuclease, exosome complex exonuclease 1, Rrp41p-like
protein (Rrp41p) [Thermococcus gammatolerans EJ3]
Length = 249
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 124/233 (53%), Gaps = 4/233 (1%)
Query: 25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-S 83
RP D + R D R ++ R G + +A GSAY E+G K++ +V+GPRE
Sbjct: 4 RPEGLKLIDENGRRIDGRRKYELRKIHMEVGVLKNADGSAYIEWGKNKILAAVYGPREIH 63
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTV 140
K + + L + F+ R + G D + + S ++ ALE A+ILE FP+T V
Sbjct: 64 PKHLQRPDTAVLRVRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPALILEMFPRTVV 123
Query: 141 DVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQ 200
DVF VL++ I+ AS+ALADAG+ M DLVA+ + + +++D +E++Y
Sbjct: 124 DVFIEVLQADAGTRVAGITAASLALADAGVPMRDLVAACAAGKIDGEIVLDLNKDEDNYG 183
Query: 201 DGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
+ + +A MP + ++T L + G + F EA++L + + + + R LKE
Sbjct: 184 EADVPVAIMPLKNDITLLQMDGYLTKEEFIEAVKLAIKGAKAVYQKQREALKE 236
>gi|242399326|ref|YP_002994750.1| Probable exosome complex exonuclease 1 [Thermococcus sibiricus MM
739]
gi|242265719|gb|ACS90401.1| Probable exosome complex exonuclease 1 [Thermococcus sibiricus MM
739]
Length = 246
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 123/225 (54%), Gaps = 4/225 (1%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSN 91
D + R D R ++ R G + SA GSAY E+G K++ +V+GPRE K + +
Sbjct: 11 DENGYRVDGRKKYELRKIKMEVGVLKSADGSAYVEWGKNKIMAAVYGPREIHPKHLQKPD 70
Query: 92 IGRLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
L + F+ R + G D + + S ++ ALE A+ILE FP+T++D+F VL+
Sbjct: 71 RAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPAVILELFPRTSIDIFIEVLQ 130
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ I+ AS+ALADAGI M DLVA+ + + +++D EE++Y + + +A
Sbjct: 131 ADAGTRVAGITAASLALADAGIPMKDLVAACAAGKIDGEIVLDLNKEEDNYGEADVPVAI 190
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
MP + ++T L + G + F EA++L + + + + R L+E
Sbjct: 191 MPIKNDITLLQMDGYLTKEEFLEAVKLAIKGAKAVYQKQREALRE 235
>gi|167044981|gb|ABZ09646.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG8G2]
Length = 245
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 119/225 (52%), Gaps = 4/225 (1%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
D + +R D R ++ R + G + +A GSAY EFG K++ VFGPR+ K M +
Sbjct: 12 DENGIRSDGRKVNETRKVTIKVGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHMSNPD 71
Query: 92 IGRLNCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
G L F+ R + + + S +L +ALE A+ILE FP+T +DV+ VL+
Sbjct: 72 TGILRVRYHMEPFSVSERKNPAPSRREIEISKVLKEALEPAVILEKFPRTAIDVYLEVLQ 131
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ G + ASVALADAGI M D+V S + L++D EE+ + I
Sbjct: 132 ADGGSRCAALDAASVALADAGIPMRDMVCSCAAGKAADALILDVNNEEDQAGQADMPIGY 191
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
MP+ ++T L + G +T F + ++L L+ ++ +I ++ L+E
Sbjct: 192 MPNLGKITLLQLDGVLTTDEFKKCIELGLEGCKQVYEIQKNALRE 236
>gi|390960833|ref|YP_006424667.1| exosome complex exonuclease Rrp41 [Thermococcus sp. CL1]
gi|390519141|gb|AFL94873.1| exosome complex exonuclease Rrp41 [Thermococcus sp. CL1]
Length = 249
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 122/224 (54%), Gaps = 4/224 (1%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSN 91
D + R D R ++ RP G + +A GSAY E+G K++ +V+GPRE K + +
Sbjct: 12 DENGKRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIHPKHLQRPD 71
Query: 92 IGRLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
L + F+ R + G D + + S ++ ALE A+ILE FP+T +DVF VL+
Sbjct: 72 RAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPALILEMFPRTAIDVFIEVLQ 131
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ I+ AS+ALADAG+ M DLVA+ + + +++D EE++Y + + +A
Sbjct: 132 ADAGTRVAGITAASLALADAGVPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVAI 191
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
MP + ++T L + G + F EA++L + + + + R LK
Sbjct: 192 MPLKNDITLLQMDGYLTRDEFIEAVRLAIKGAKAVYQKQREALK 235
>gi|167044510|gb|ABZ09185.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG6J21]
Length = 245
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 120/225 (53%), Gaps = 4/225 (1%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
D + +R D R ++ R + G + +A GSAY EFG K++ VFGPR+ K M +
Sbjct: 12 DENGIRSDGRKVNETRKVTIKVGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHMSNPD 71
Query: 92 IGRLNCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
G L F+ R + + + S +L +ALE A+ILE FP+T +DV+ VL+
Sbjct: 72 TGILRVRYHMAPFSVSERKNPAPSRREIEISKVLKEALEPAVILEKFPRTAIDVYLEVLQ 131
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ G + ASVALADAGI M D+V S + + L++D EE+ + I
Sbjct: 132 ADGGTRCAALDAASVALADAGIPMRDMVCSCAAGKVADALILDVNNEEDQAGQADMPIGY 191
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
MP+ ++T L + G +T F + ++L ++ ++ +I ++ L+E
Sbjct: 192 MPNFGKITLLQLDGVLTTDEFKKCIELGIEGCKQVYEIQKNALRE 236
>gi|299753339|ref|XP_001833208.2| mRNA transport regulator 3 [Coprinopsis cinerea okayama7#130]
gi|298410256|gb|EAU88481.2| mRNA transport regulator 3 [Coprinopsis cinerea okayama7#130]
Length = 259
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 120/211 (56%), Gaps = 6/211 (2%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATP 107
RP F + G + A+GSAY E G TK+ +++GPR+SK + + + GRLN + + F+ P
Sbjct: 47 RPIFLQPGLIEQANGSAYIETGKTKIACAIYGPRQSKN-VAFHDKGRLNVELKFAPFSCP 105
Query: 108 VRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSD--LPVVISCAS 162
R + ++ + + +H+A+ ++ LET PK+TVDVF VLE G + + AS
Sbjct: 106 KRRAPIRDAEDRSIAMAIHQAILPSVRLETLPKSTVDVFITVLEEDGIEGCVAAGSVAAS 165
Query: 163 VALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTG 222
AL DAGI ++ +VAS S + +G+ + +DP +E S G+ ++A MP+ +T + G
Sbjct: 166 AALVDAGIEVFGIVASTSAAVIGEEIWLDPSEQESSQSKGTFVLATMPALNTITSIWQNG 225
Query: 223 EWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
E + +AM++C + ++ L+E
Sbjct: 226 EMAPDQVLKAMEICEKQCVDIHTVVAERLRE 256
>gi|167044148|gb|ABZ08830.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG5E24]
Length = 245
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 119/225 (52%), Gaps = 4/225 (1%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
D + +R D R ++ R + G + +A GSAY EFG K++ VFGPR+ K M +
Sbjct: 12 DENGIRSDGRKVNETRKVTIKVGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHMSNPD 71
Query: 92 IGRLNCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
G L F+ R + + + S +L +ALE A+ILE FP+T +DV+ VL+
Sbjct: 72 TGILRVRYHMEPFSVSERKNPAPSRREIEISKVLKEALEPAVILEKFPRTAIDVYLEVLQ 131
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ G + ASVALADAGI M D+V S + L++D EE+ + I
Sbjct: 132 ADGGTRCAALDAASVALADAGIPMRDMVCSCAAGKAADTLILDVNNEEDQAGQADMPIGY 191
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
MP+ ++T L + G +T F + ++L ++ ++ +I ++ L+E
Sbjct: 192 MPNFGKITLLQLDGVLTTDEFKKCIELGIEGCKQVYEIQKNALRE 236
>gi|449667396|ref|XP_002164788.2| PREDICTED: exosome complex component MTR3-like [Hydra
magnipapillata]
Length = 212
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 120/207 (57%), Gaps = 6/207 (2%)
Query: 51 FFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFA--TPV 108
+ + G ++ A+GS+Y E +TK+I +V+GPR++ K +S+ G + C V++ F+ V
Sbjct: 2 YLKAGTIHQANGSSYVETCDTKLICAVYGPRDNPKRHQFSSKGNIFCEVTFAPFSWHERV 61
Query: 109 RGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADA 168
Q S K++SS + +A E A+ LE++PK +D++ +LE G+ L AS+ALADA
Sbjct: 62 SNQDSLSKEYSSAIVQAFESAVCLESYPKAQIDIYINILEYSGNCLSYAFIAASIALADA 121
Query: 169 GIMMYDLVASVSVSCLG----KNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEW 224
GI M DLV S + + + +DP EE S G ++IA MPS +++ L++ GE
Sbjct: 122 GIEMLDLVTSCESAFSNETSIQRVCVDPSGEEVSLCKGRVVIAYMPSLNKISYLSMQGEE 181
Query: 225 STPHFNEAMQLCLDASAKLGKIMRSCL 251
+ + + C++ ++ K M+ C+
Sbjct: 182 TIDDSMQNVITCIEGCLRIYKYMKECI 208
>gi|395546050|ref|XP_003774907.1| PREDICTED: exosome complex component MTR3-like [Sarcophilus
harrisii]
Length = 305
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 123/223 (55%), Gaps = 14/223 (6%)
Query: 41 SRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI-GRLNCNV 99
+R + RP + R G + A+GS+Y E G+TK++ SV+GPR+ + + + GRL C+
Sbjct: 37 NRDPRRQRPVYIRAGQTSQATGSSYLESGDTKIVASVYGPRQVEGGEPLTGLQGRLICDF 96
Query: 100 SYTTFATPVRGQ-------GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
F+ RG+ + K+ S L +AL A+ L +P+ ++V+ LVLE GG+
Sbjct: 97 RRAPFSG--RGKRRVPSSNNREEKEMSLALQEALMPAVQLLRYPRAQLEVYVLVLEDGGA 154
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKN---LLIDPVLEEESYQDGSLMIACM 209
L I AS+ALADAGI M+DLV++ S+ G L+DPVL EE G L +A M
Sbjct: 155 ILASGIIAASLALADAGIEMFDLVSACSLVLSGDAEPVWLLDPVLYEEQQACGGLTVALM 214
Query: 210 PSRYEVTQLTVTGEW-STPHFNEAMQLCLDASAKLGKIMRSCL 251
P R EV+ L + E S + E ++L ++ +L + CL
Sbjct: 215 PVRNEVSGLLGSSEGCSAEVWAEGVRLGMEGCQRLYTTLHKCL 257
>gi|307178493|gb|EFN67182.1| Exosome complex exonuclease MTR3 [Camponotus floridanus]
Length = 282
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 120/228 (52%), Gaps = 14/228 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R ++ R F +TG ++ A GSAY E GNTK+I SVF PRE Y G L C
Sbjct: 37 RHDGRSNNELRNIFLKTGIISQAKGSAYIEMGNTKIICSVFDPREVPNKTGYCVQGELFC 96
Query: 98 NVSYTTFATPVRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDL 154
+ F+ R Q ++ K++S +L +ALE A+ L+ FP VDV+A VL++GGS L
Sbjct: 97 EFKFAPFSHHKRKMHQQDAEEKEYSLILQRALEPAVCLQEFPNFQVDVYATVLDNGGSAL 156
Query: 155 PVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESY-----------QDGS 203
I AS+ALA+AG+ M+ LV + +V L+DP EE++ G
Sbjct: 157 AAAIMAASLALANAGVPMFGLVTASTVGIYDHTYLVDPTDTEETFCCTKSVPGTVHNHGI 216
Query: 204 LMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
++ A +P +++++ V G T +M L +A + ++ CL
Sbjct: 217 IIQAALPQHGQISEMFVVGSVDTDTIVHSMDLISEAHKDICPLLEQCL 264
>gi|409082295|gb|EKM82653.1| hypothetical protein AGABI1DRAFT_97612 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 261
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 125/225 (55%), Gaps = 10/225 (4%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
D + RG RP F + G + A+GSAY E +TK+ +V+GPR+SK + YS G
Sbjct: 32 DPFQRRKRGPLDVRPIFLQPGLITQANGSAYIETEHTKIACAVYGPRQSKN-VSYSESGH 90
Query: 95 LNCNVSYTTFATPVRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
LN V + F+ R + ++ + + +H+A+ ++ LE PK+T+DVF V+E+ G
Sbjct: 91 LNVEVKFAPFSCRRRRAPLRDAEDRTIAIAVHQAIVSSVRLELLPKSTIDVFVTVIEADG 150
Query: 152 SDLPVVISCASVA----LADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIA 207
+ VI+ AS+A LADAGI ++ LV S S S +G + +DP +E S +G+++++
Sbjct: 151 --IEGVIASASIAVSTALADAGIEIFGLVVSCSASLIGGGIWLDPSEDEVSCSEGTIIVS 208
Query: 208 CMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
C+P+ VT + G+ +AM+ C + KI+ L+
Sbjct: 209 CIPALGTVTSVWQGGQIPPKSVVDAMEKCQSRCTDIHKIVAQALR 253
>gi|410721458|ref|ZP_11360793.1| archaeal exosome-like complex exonuclease 1 [Methanobacterium sp.
Maddingley MBC34]
gi|410598915|gb|EKQ53478.1| archaeal exosome-like complex exonuclease 1 [Methanobacterium sp.
Maddingley MBC34]
Length = 249
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 119/224 (53%), Gaps = 4/224 (1%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLN 96
RPD R F + RP G + A GS+Y E G+ KV+ +V+GPRE + ++ N+ L
Sbjct: 26 RPDGRAFDELRPLKIEAGVLERADGSSYVEIGDNKVLAAVYGPRELHVRRLLKPNMAILR 85
Query: 97 CNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSD 153
C + F+ R + G D + + S + +AL A+ LE FP++T+D+F VL++ G
Sbjct: 86 CRYNMAPFSVDDRKRPGPDRRSVEISKITTEALNPAVFLEKFPRSTIDIFIEVLQAEGGT 145
Query: 154 LPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRY 213
I+ ASVALADAGI M D+V++ + +++D E+ + L IA MP
Sbjct: 146 RCAGITAASVALADAGIPMRDMVSACAAGKADGQVIMDLSEGEDKEGEADLPIAMMPRTG 205
Query: 214 EVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASD 257
++T L + G ++ F +A+ L + + + ++ +K D
Sbjct: 206 DITLLQMDGHLTSDEFEKALDLAVKGCKIISEEQKNAIKNRYGD 249
>gi|13541138|ref|NP_110826.1| exosome complex exonuclease Rrp41 [Thermoplasma volcanium GSS1]
gi|29336899|sp|Q97BZ5.1|ECX1_THEVO RecName: Full=Probable exosome complex exonuclease 1
gi|14324525|dbj|BAB59452.1| ribonuclease PH [Thermoplasma volcanium GSS1]
Length = 248
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 122/221 (55%), Gaps = 4/221 (1%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIG 93
D LR D R F++ RP G +N A GSAY E+G K+IV V+GP+E+ K +
Sbjct: 15 DNLRLDGRSFNELRPIKIEAGVLNRADGSAYIEWGGNKIIVGVYGPKEAYPKHSQDIDHA 74
Query: 94 RLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ + F+ R + G D + + S ++ +AL +I++E FP+ +DV+ VL++
Sbjct: 75 VVKARYNMAAFSVDERKRPGPDRRTMEISKVISEALSSSIMIEQFPRAEIDVYIEVLQAD 134
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
++ A+VALADAGI M D+V + + ++++D EE+++ + + +A MP
Sbjct: 135 AGTRIAGLTAATVALADAGIPMRDMVVGCTAGKVDGHIVLDLSKEEDNFGEADIPMAIMP 194
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
E+ L + G+ + F EA + ++A+ K+ +I R+ L
Sbjct: 195 KTGEIVLLQMDGDVTEDEFYEATSMIIEATKKISQIQRNAL 235
>gi|333986695|ref|YP_004519302.1| exosome complex exonuclease 1 [Methanobacterium sp. SWAN-1]
gi|333824839|gb|AEG17501.1| exosome complex exonuclease 1 [Methanobacterium sp. SWAN-1]
Length = 242
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 115/224 (51%), Gaps = 4/224 (1%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLN 96
R D R F + RP G + A GSAY E G KV+ +V+GPRE + +M N L
Sbjct: 19 RADGRAFDELRPLKIEAGVLERADGSAYVEMGGNKVLAAVYGPRELHIRRIMMPNKAVLR 78
Query: 97 CNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSD 153
C + F+ R + G D + + S + +AL A+ LE FP++T+DVF VLE+ G
Sbjct: 79 CKYNMAPFSVDDRKRPGPDRRSVEISKITSEALTPAVFLEKFPRSTIDVFIEVLEAEGGT 138
Query: 154 LPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRY 213
I+ ASVALADAG+ M D+V + + +++D E+ + L IA MP
Sbjct: 139 RCAGITAASVALADAGVPMRDIVVACAAGKSNGQVVMDLSEVEDKEGEADLPIAMMPRTG 198
Query: 214 EVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASD 257
E+T L + G + F +A+ L ++ ++ + + +K D
Sbjct: 199 EITLLQMDGHLTGEEFEKALDLAVEGCKRISEEQKKAIKNRYGD 242
>gi|408382267|ref|ZP_11179812.1| exosome complex exonuclease Rrp41 [Methanobacterium formicicum DSM
3637]
gi|407814923|gb|EKF85545.1| exosome complex exonuclease Rrp41 [Methanobacterium formicicum DSM
3637]
Length = 249
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 117/224 (52%), Gaps = 4/224 (1%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLN 96
RPD R F + RP G + A GSAY E G+ KV+ +V+GPRE + ++ N+ L
Sbjct: 26 RPDGRAFDELRPLKIEAGVLERADGSAYVEIGDNKVLAAVYGPRELHVRRLLKPNMAILR 85
Query: 97 CNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSD 153
C + F+ R + G D + + S + +AL A+ LE FP++T+D+F V+++ G
Sbjct: 86 CRYNMAPFSVDDRKRPGPDRRSVEISKITTEALNPAVFLEKFPRSTIDIFIEVIQAEGGT 145
Query: 154 LPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRY 213
I+ ASVALADAGI M D+V++ + +++D E+ + L IA MP
Sbjct: 146 RCAGITAASVALADAGIPMRDMVSACAAGKADGQVIMDLSEWEDKEGEADLPIAMMPRTG 205
Query: 214 EVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASD 257
++T L + G + F +A+ L + + + + +K D
Sbjct: 206 DITLLQMDGHLTDDEFEKALDLAIKGCKIISEEQKKAIKNRYGD 249
>gi|341582108|ref|YP_004762600.1| exosome complex exonuclease Rrp41 [Thermococcus sp. 4557]
gi|340809766|gb|AEK72923.1| exosome complex exonuclease Rrp41 [Thermococcus sp. 4557]
Length = 249
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 125/232 (53%), Gaps = 4/232 (1%)
Query: 25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-S 83
+P D + R D R ++ RP G + +A GSAY E+G K++ +V+GPRE
Sbjct: 4 KPEDLKLIDENGKRVDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIH 63
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTV 140
K + + L + F+ R + G D + + S ++ ALE A+ILE FP+T++
Sbjct: 64 PKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPALILEMFPRTSI 123
Query: 141 DVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQ 200
D+F VL++ I+ AS+ALADAG+ M DLVA+ + + +++D +E++Y
Sbjct: 124 DLFIEVLQADAGTRVAGITAASLALADAGVPMRDLVAACAAGKIEGEIVLDLNKDEDNYG 183
Query: 201 DGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
+ + +A MP + ++T L + G + F EA++L + + + + R LK
Sbjct: 184 EADVPVAIMPLKNDITLLQMDGYLTKDEFVEAVRLAIKGAKAVYQKQREALK 235
>gi|380027897|ref|XP_003697651.1| PREDICTED: exosome complex component MTR3-like [Apis florea]
Length = 273
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 117/229 (51%), Gaps = 14/229 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+R D R + R F +TG V+ A GSAY E GNTKV+ SVF PRE Y G +
Sbjct: 36 IRNDKRANSEMRKIFLKTGIVSQAKGSAYIELGNTKVVCSVFDPRELSNRNGYCTQGEIY 95
Query: 97 CNVSYTTFATPVRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSD 153
C + F+ R Q ++ K +S +L +ALE A+ L FP VDV+A+VL++ GS
Sbjct: 96 CEFKFAPFSCQKRKIHQQDAEEKQYSLILQRALEPAVCLHEFPNFQVDVYAMVLDNAGSS 155
Query: 154 LPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEE-----------SYQDG 202
L I AS ALA+AG+ M+ LV + ++ L+DP EE + G
Sbjct: 156 LAAAIMAASTALANAGVPMFGLVTASTIGIYDNYYLMDPTDTEEVICNTQPDNQDDFNHG 215
Query: 203 SLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
+ +A + +V+++ + G T +A ++ + + + +++ CL
Sbjct: 216 IITLASLAQHNQVSEVFLIGSIDTKSIIQATEILITVNKDICPVLQQCL 264
>gi|157114057|ref|XP_001657962.1| hypothetical protein AaeL_AAEL006697 [Aedes aegypti]
gi|108877466|gb|EAT41691.1| AAEL006697-PA [Aedes aegypti]
Length = 307
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 123/245 (50%), Gaps = 16/245 (6%)
Query: 23 KTRPPIFSGSDVDWLRPDS-----RGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV 77
K R F D P R ++ R F + G V++A GS Y E GNTKVIVSV
Sbjct: 22 KNRDKTFEDRVADVFEPSGKRKCGRKDNESRKYFMKLGVVSTAKGSTYLELGNTKVIVSV 81
Query: 78 FGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQ---GSDHKDFSSMLHKALEGAIILET 134
F PRE K + +G L C+ ++ FA R ++ + ++ + KAL+ +
Sbjct: 82 FDPREIPKQNKFRALGELYCDFKFSPFACIHRKNPQTDAEERSLAAAMTKALQPVVCRHL 141
Query: 135 FPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVL 194
FP +D+FA VLE GS L VI+ A +AL+DA I M+D+V + +V+ + + +DP L
Sbjct: 142 FPNFQIDIFANVLEDDGSVLAAVITAAGLALSDATISMFDIVTASTVAVIEDKIYLDPTL 201
Query: 195 EEE--------SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKI 246
EE S G + +A + + + +++ G+ S EA Q +A+ ++ +
Sbjct: 202 AEERLCLEGGKSGNHGVITLAKLHTLDQTSEIRQAGDISLEKLKEACQRLNEANNEIAPV 261
Query: 247 MRSCL 251
++ L
Sbjct: 262 VQQML 266
>gi|94469342|gb|ABF18520.1| exosomal 3'-5' exoribonuclease complex subunit Rrp41-like protein
[Aedes aegypti]
Length = 307
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 123/245 (50%), Gaps = 16/245 (6%)
Query: 23 KTRPPIFSGSDVDWLRPDS-----RGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV 77
K R F D P R ++ R F + G V++A GS Y E GNTKVIVSV
Sbjct: 22 KNRDKTFEDRVADVFEPSGKRKCGRKDNESRKYFMKLGVVSTAKGSTYLELGNTKVIVSV 81
Query: 78 FGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQ---GSDHKDFSSMLHKALEGAIILET 134
F PRE K + +G L C+ ++ FA R ++ + ++ + KAL+ +
Sbjct: 82 FDPREIPKQNKFRALGELYCDFKFSPFACIHRKNPQTDAEERSLAAAMTKALQPVVCRHL 141
Query: 135 FPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVL 194
FP +D+FA VLE GS L VI+ A +AL+DA I M+D+V + +V+ + + +DP L
Sbjct: 142 FPNFQIDIFANVLEDDGSVLAAVITAAGLALSDATISMFDIVTASTVAVIEDKIYLDPTL 201
Query: 195 EEE--------SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKI 246
EE S G + +A + + + +++ G+ S EA Q +A+ ++ +
Sbjct: 202 AEERLCLEGGKSGNHGVITLAKLHTLDQTSEILQAGDISLEKLKEACQRLNEANNEIAPV 261
Query: 247 MRSCL 251
++ L
Sbjct: 262 VQQML 266
>gi|167045225|gb|ABZ09885.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG8O8]
Length = 245
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 119/225 (52%), Gaps = 4/225 (1%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
D + +R D R ++ R + G + +A GSAY EFG K++ VFGPR+ K + +
Sbjct: 12 DENGIRCDGRKVNETRKVTIKAGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHLSNPD 71
Query: 92 IGRLNCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
G L F+ R + + + S ++ +ALE A+ILE FP+T +DVF VL+
Sbjct: 72 TGILRVRYHMEPFSVDERKNPAPSRREIEISKVVKEALEPAVILEKFPRTVIDVFLEVLQ 131
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ G + ASVALADAGI M D+V + + + L+ID EE+ + +
Sbjct: 132 ADGGTRCAALDAASVALADAGIPMRDMVCACAAGKVADTLIIDVNNEEDQAGQADMPVGY 191
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
MP+ +VT L + G + F + ++L ++ S ++ +I + L+E
Sbjct: 192 MPNLGKVTLLQLDGVLTPEEFKKCVELGIEGSKQVYEIQKQALRE 236
>gi|62858563|ref|NP_001017016.1| exosome complex component MTR3 [Xenopus (Silurana) tropicalis]
gi|123892820|sp|Q28F19.1|EXOS6_XENTR RecName: Full=Exosome complex component MTR3; AltName: Full=Exosome
component 6; AltName: Full=mRNA transport regulator 3
homolog
gi|89269970|emb|CAJ81566.1| exosome component 6 [Xenopus (Silurana) tropicalis]
gi|134024282|gb|AAI36081.1| rarg protein [Xenopus (Silurana) tropicalis]
Length = 270
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 126/224 (56%), Gaps = 10/224 (4%)
Query: 41 SRGFHQCRPAFFRTGAVNSASGSAYAEFGN--TKVIVSVFGPRESKKAMMYSNI-GRLNC 97
RG + RP F R G ++ A GSAY E G+ TKV+ +V GPRE + GRL C
Sbjct: 34 GRGPSEPRPVFVRAGLLSQAKGSAYLEAGSGGTKVLCAVHGPRERGMGGERAETRGRLLC 93
Query: 98 NVSYTTFAT--PVRGQ---GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
++ + F+ P G G + L ++LE A+ L+ +P+ V V+ LVLE GS
Sbjct: 94 DLRWAPFSRRGPWSGSCPAGPSPRQAGLQLQESLEPAVRLDRYPRAEVIVWVLVLEDRGS 153
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVS-CLGKNLLIDP-VLEEESYQDGSLMIACMP 210
LP +SCAS+ALADAGI M+DL +S G LL+DP EEE+ G++ ++ +P
Sbjct: 154 ALPAAVSCASLALADAGIEMFDLALGCGLSRGPGGELLLDPDDDEEEAGSGGTMSLSLLP 213
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEA 254
+ +V+ L +GEW EA++LC++ +L ++ CL +A
Sbjct: 214 TLNQVSGLISSGEWEGESSEEAVRLCMEGCQRLYPVLHQCLVKA 257
>gi|385806380|ref|YP_005842778.1| exosome complex exonuclease 1 [Fervidicoccus fontis Kam940]
gi|383796243|gb|AFH43326.1| exosome complex exonuclease 1 [Fervidicoccus fontis Kam940]
Length = 246
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 123/232 (53%), Gaps = 4/232 (1%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSN 91
D + LR D R Q RP + G + +A GSA +G T+V+ +V+GPRE+ + M +
Sbjct: 11 DENGLRVDGRRPDQLRPISMKVGILKNAQGSALVSYGKTQVMAAVYGPREALPRHMTLPD 70
Query: 92 IGRLNCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
L F+T R + + + S ++ +ALE + E FP+TT+DVF VL+
Sbjct: 71 RAILRIRYHMAPFSTSERKSPAPTRREIELSKVIREALEATVFSELFPRTTIDVFIEVLQ 130
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ G ++ AS+ALADAGI M DL+A V+V + L++D E+S + +A
Sbjct: 131 ADGGTRTTSLTAASLALADAGIPMKDLIAGVAVGKVDGVLVLDINEIEDSTGQADMPVAI 190
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDEQE 260
MP+ ++ L + G + FNEA+++ A ++ + + L+E S +E
Sbjct: 191 MPNLNKIVLLQLNGTLTRDEFNEALKMAQKAIKEIYIMQKEALREKYSSMEE 242
>gi|386876598|ref|ZP_10118697.1| exosome complex exonuclease 1 [Candidatus Nitrosopumilus salaria
BD31]
gi|386805560|gb|EIJ65080.1| exosome complex exonuclease 1 [Candidatus Nitrosopumilus salaria
BD31]
Length = 244
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 122/225 (54%), Gaps = 4/225 (1%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
D + +R D R + R + G + +A GSAY EFG+ K++V VFGPR+ K M ++
Sbjct: 12 DENGIRCDGRKVDEPRRIMIKAGGLKNADGSAYIEFGDNKILVGVFGPRDVHPKHMSNTD 71
Query: 92 IGRLNCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
G L F+ R + + + S ++ +ALE A++L+ FP+T VDVF VL+
Sbjct: 72 TGILRVRYHMEPFSVGERKNPAPSRREIEISKVIKEALEPAVMLDKFPRTAVDVFIEVLQ 131
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ G ++ ASVALADAGI M D+VA+++ + +++D EE+ + I
Sbjct: 132 ADGGTRCAALTAASVALADAGIPMRDMVAAIAAGKVADTVILDVNNEEDQAGQADMPIGY 191
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
MPS ++T L + G + + + +Q+ +D + ++ + L+E
Sbjct: 192 MPSLEKITLLQLDGVLTPEEYKKCVQVGVDGCKIVYELQKKALQE 236
>gi|426200127|gb|EKV50051.1| hypothetical protein AGABI2DRAFT_63232 [Agaricus bisporus var.
bisporus H97]
Length = 261
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 122/218 (55%), Gaps = 10/218 (4%)
Query: 42 RGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSY 101
RG RP F + G + A+GSAY E +TK+ +V+GPR+SK + YS G LN V +
Sbjct: 39 RGPLDVRPIFLQPGLITQANGSAYIETEHTKIACAVYGPRQSKN-VSYSESGHLNVEVKF 97
Query: 102 TTFATPVRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVI 158
F+ R + ++ + + +H+A+ ++ LE PK+T+DVF V+E+ G + VI
Sbjct: 98 APFSCRRRRAPLRDAEDRTIAIAVHQAIVSSVRLELLPKSTIDVFVTVIEADG--IEGVI 155
Query: 159 SCASVA----LADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYE 214
+ AS+A LADAGI + LV S S S +G + +DP +E S +G+++++C+P+
Sbjct: 156 ASASIAVSTALADAGIEILGLVVSCSASLIGGGIWLDPSEDEISCSEGTIIVSCIPALGT 215
Query: 215 VTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
VT + G+ +AM+ C + KI+ L+
Sbjct: 216 VTSIWQGGQIPLKSVVDAMEKCQSRCTDIHKIVAQALR 253
>gi|281200684|gb|EFA74902.1| hypothetical protein PPL_11936 [Polysphondylium pallidum PN500]
Length = 262
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 82/219 (37%), Positives = 116/219 (52%), Gaps = 32/219 (14%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
++ SR Q R F TG ++SASGS+Y E TK+I SV GPR + K ++ +LN
Sbjct: 51 VKRTSRSDEQFRQIFMNTGIISSASGSSYIEIEQTKIICSVHGPRATHKTELFET-AKLN 109
Query: 97 CNVSYTTFAT-PVRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
C + Y +F+T R + + KD+S ++ +A+ GAI LE +PK +D++ LVL GS
Sbjct: 110 CELKYASFSTHDARSDYVESTKEKDYSLIITQAIIGAIRLEKYPKAAIDIYILVLCDAGS 169
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSR 212
L I AS+ALADAG+ MYDLVA+ S MPS
Sbjct: 170 ALAASIVAASMALADAGVEMYDLVAACS---------------------------SMPSH 202
Query: 213 YEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
E+TQL TGE S + + + LC+D K+ IM+ L
Sbjct: 203 NEITQLLQTGELSYTNIVDGIDLCIDGCDKVYSIMKQNL 241
>gi|429216660|ref|YP_007174650.1| archaeal exosome-like complex exonuclease 1 [Caldisphaera
lagunensis DSM 15908]
gi|429133189|gb|AFZ70201.1| archaeal exosome-like complex exonuclease 1 [Caldisphaera
lagunensis DSM 15908]
Length = 243
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 121/231 (52%), Gaps = 5/231 (2%)
Query: 25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK 84
RP F D D R D R + RP + G + +A GSA E+G T+V+ +V+GP+ES+
Sbjct: 6 RPQRFI--DDDGKRLDGRKPDEVRPIKMQVGVLTNADGSALVEYGLTRVLAAVYGPKESQ 63
Query: 85 KAMMYSNIGRLNCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVD 141
K+M+ + L F+T R + + + S +L ++LE +I E FP+T++D
Sbjct: 64 KSMLLPDRATLRVRYHMAPFSTEERKNPAPTRRELELSKVLRESLEPVVITEYFPRTSID 123
Query: 142 VFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQD 201
VF VL+S G V + AS+ALADAGI M LVA V++ + L++D E+ Y D
Sbjct: 124 VFIEVLQSDGGTRTVGATAASLALADAGIPMRALVAGVAIGKVDNVLIVDLNEVEDMYGD 183
Query: 202 GSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
+ + P ++T + G + F+ A+ + + K+ + + L+
Sbjct: 184 ADMPVVAAPDIGQITLYQLNGVLTKEEFHNAIDMAMKVITKIVDMEKETLR 234
>gi|242025392|ref|XP_002433108.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212518649|gb|EEB20370.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 278
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 125/239 (52%), Gaps = 13/239 (5%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI 92
D + +R D R F R + +TG V A GSAY E NTKV+VSVF PRE + ++
Sbjct: 37 DNNKIRKDGRTFEDQRKIYMKTGVVTQAKGSAYLELNNTKVLVSVFEPREIPRLSEFTPN 96
Query: 93 GRLNCNVSYTTF-ATPVRGQGSD--HKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
G + C + F +G D KD S +L ++LE A+ FP VDV+AL+L++
Sbjct: 97 GEIYCEFKFAPFYGLERKGHIMDLEEKDLSIILKRSLEPAVCRHEFPNFQVDVYALLLDN 156
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESY---------- 199
GS L I+ A +ALADAGI MYD++ SV++ + IDP EEE +
Sbjct: 157 DGSCLSAAITAAGLALADAGIPMYDILTSVTLGIHNDMIFIDPNFEEEKFCKSFFKNKTS 216
Query: 200 QDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDE 258
+ G + ++ MP +VT++T +G S ++M L + + + + CL + ++
Sbjct: 217 EIGIISLSYMPEMAQVTEITQSGTVSINTILKSMDLLISKCKTISDLTKKCLMDNVMNQ 275
>gi|20093819|ref|NP_613666.1| exosome complex exonuclease Rrp41 [Methanopyrus kandleri AV19]
gi|29336819|sp|Q8TYC1.1|ECX1_METKA RecName: Full=Probable exosome complex exonuclease 1
gi|19886742|gb|AAM01596.1| Predicted exosome subunit, RNase PH [Methanopyrus kandleri AV19]
Length = 239
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 8/225 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE---SKKAMMYSN 91
D LR D R + RP + G + A GSAY E G K++ +V+GPRE K
Sbjct: 12 DGLRLDGRKPDEMRPLKIQAGVLKRADGSAYLELGANKIVAAVYGPRELHPRHKQKPDRA 71
Query: 92 IGRLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ R N++ F+ R + G D + + S + +ALE AI E +P+T +D+F VL+
Sbjct: 72 VVRFRYNMA--PFSVDERKRPGPDRRSIEISKLSKEALEPAIFTEYYPRTAIDIFVEVLQ 129
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ IS ASVALADAGI M DLVA+ + + +++DP+ E+ Y + + +A
Sbjct: 130 ADAGTRCAGISAASVALADAGIEMRDLVAACAAGKVEGKVVLDPMYYEDGYGEADVPLAM 189
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
MP ++T L + G+ + F +A++L + K R LKE
Sbjct: 190 MPKEGKITLLQMDGDMTPGEFKQAVKLAKKGCKIVYKEQRRALKE 234
>gi|407464319|ref|YP_006775201.1| exosome complex exonuclease 1 [Candidatus Nitrosopumilus sp. AR2]
gi|407047507|gb|AFS82259.1| exosome complex exonuclease 1 [Candidatus Nitrosopumilus sp. AR2]
Length = 244
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 122/230 (53%), Gaps = 8/230 (3%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
D + +R D R + R + G + +A GSAY EFG+ K++V VFGPR+ K M ++
Sbjct: 12 DENGIRCDGRKVDEPRRIMIKAGGLKNADGSAYIEFGDNKILVGVFGPRDVHPKHMSNTD 71
Query: 92 IGRLNCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
G L F+ R + + + S ++ +ALE A++LE FP+T VDVF VL+
Sbjct: 72 TGILRVRYHMEPFSVGERKNPAPSRREIEISKVIKEALEPAVMLEKFPRTAVDVFIEVLQ 131
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ G ++ ASVALADAGI M D+VA+++ + +++D EE+ + I
Sbjct: 132 ADGGTRCAALTAASVALADAGIPMRDMVAAIAAGKVADTVILDVNNEEDQAGQADMPIGY 191
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDE 258
MPS ++T L + G + + + C+D K +++ K+A D+
Sbjct: 192 MPSLKKITLLQLDGVLTPEEYKK----CVDVGVKGCELVYELQKKALHDK 237
>gi|297527572|ref|YP_003669596.1| exosome complex exonuclease 1 [Staphylothermus hellenicus DSM
12710]
gi|297256488|gb|ADI32697.1| exosome complex exonuclease 1 [Staphylothermus hellenicus DSM
12710]
Length = 240
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 115/221 (52%), Gaps = 4/221 (1%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIG 93
D LR D R + RP G + +A GSAY E+G TK+I +V+GPRE + + +
Sbjct: 10 DGLRHDGRRPDELRPIKMDVGVLKNADGSAYVEYGGTKIIAAVYGPREVYPRHLALPDRA 69
Query: 94 RLNCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ C F+T R + + + S ++ +ALE + E +P+TT+DVF VL++
Sbjct: 70 LIRCRYHMAPFSTSDRKSPAPSRREIELSKVIREALESLVFSELYPRTTIDVFIEVLQAD 129
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
G ++ AS+ALADAGI M DLVA V+ + L++D E+ Y + + I
Sbjct: 130 GGTRTTGLTAASLALADAGIPMRDLVAGVAAGKVDGVLVLDIDEVEDEYGEADMPIGYAA 189
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
E+ L + G ++ F EA+ L + ++ KIM+ L
Sbjct: 190 GIDEIVLLQLNGVFTVEEFKEALNLAKRGAEQIYKIMKETL 230
>gi|16082286|ref|NP_394747.1| exosome complex exonuclease Rrp41 [Thermoplasma acidophilum DSM
1728]
gi|29336949|sp|Q9HIP2.1|ECX1_THEAC RecName: Full=Probable exosome complex exonuclease 1
gi|10640637|emb|CAC12415.1| RNase PH (yeast SIK6) related protein [Thermoplasma acidophilum]
Length = 248
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 121/221 (54%), Gaps = 4/221 (1%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIG 93
D LR D R F++ RP + G +N A GSAY E+G K++V V+GP+E+ K +
Sbjct: 15 DNLRLDGRSFNELRPIKIQAGVLNRADGSAYIEWGGNKIMVGVYGPKEAYPKHSQDIDHA 74
Query: 94 RLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ + F+ R + G D + + S ++ +AL +I++E FP+ +DV+ VL++
Sbjct: 75 IVKARYNMAAFSVDERKRPGPDRRTMEISKVISEALSSSIMIEQFPRAEIDVYIEVLQAD 134
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
++ A+VALADAG+ M D+V + + ++++D EE++Y + + IA MP
Sbjct: 135 AGTRIAGLTAATVALADAGVPMRDMVVGCTAGKVDGHMVLDLSKEEDNYGEADIPIAIMP 194
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
++ + + G+ + +AM + +A+ ++ +I R L
Sbjct: 195 KTGDIVLMQMDGDVTEDELYQAMDMIFEATKRISQIQREAL 235
>gi|336367598|gb|EGN95942.1| hypothetical protein SERLA73DRAFT_185379 [Serpula lacrymans var.
lacrymans S7.3]
Length = 260
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 128/243 (52%), Gaps = 16/243 (6%)
Query: 26 PPIFSGSDVDWL-----RP-DSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFG 79
PPIF + D L +P + R RP F + G +N A+GSAY E TK+ +V+G
Sbjct: 18 PPIFEEEEEDTLSWNIAKPREGRSPQDIRPIFLQPGLINQANGSAYIETDKTKIACAVYG 77
Query: 80 PRESKKAMMYSNIGRLNCNVSYTTFATPVRG---QGSDHKDFSSMLHKALEGAIILETFP 136
PR+SK N GRLN V ++ F+ R + ++ + + +H+A+ ++ LE P
Sbjct: 78 PRQSKTTTFSEN-GRLNVEVKFSPFSCARRKAPLRDAEDRSLAVSIHQAVLSSVRLELLP 136
Query: 137 KTTVDVFALVLESGGSDLPVVISCASVALADA----GIMMYDLVASVSVSCLGKNLLIDP 192
K+T+DVF ++E+ G + IS ++A + A GI + LVAS S + LG + +DP
Sbjct: 137 KSTIDVFITIIENDG--IEGCISSGTIAASAALADAGIEVLGLVASCSAAALGDEIWLDP 194
Query: 193 VLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
+E +G+L++ACMP+ VT + +G + + + LC + + ++ L
Sbjct: 195 TEKEARKSEGTLILACMPALGIVTNVWQSGRMTVEKATQCLDLCQERCTDIHAVVAQSLL 254
Query: 253 EAA 255
E +
Sbjct: 255 ETS 257
>gi|322792608|gb|EFZ16508.1| hypothetical protein SINV_11514 [Solenopsis invicta]
Length = 282
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 119/228 (52%), Gaps = 14/228 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R ++ R F +TG V+ A GSAY E GNTK+I SVF PRE Y G L C
Sbjct: 37 RHDGRSHNEFRNIFLKTGIVSQAKGSAYIEIGNTKIICSVFDPREIPNKTGYCVQGELFC 96
Query: 98 NVSYTTFATPVRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDL 154
+ F+ R Q ++ K++S +L +ALE A+ L+ FP VDV+A V+++GGS L
Sbjct: 97 EFKFAPFSHRKRKLHQQDAEEKEYSLILQRALEPAVCLQEFPNFQVDVYATVIDNGGSAL 156
Query: 155 PVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESY-----------QDGS 203
I AS+ALA+AG+ M+ LV + +V + L+DP EE++ G
Sbjct: 157 AAAIMAASLALANAGVPMFGLVTASTVGICDQTYLVDPTDTEEAFCSIKTAQGTADNHGI 216
Query: 204 LMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
++ A +P +++++ V G +M L + + ++ CL
Sbjct: 217 IVQAALPQHGQISEMFVMGSMDMNVIEHSMDLLNEIHKDICPLLEQCL 264
>gi|325959906|ref|YP_004291372.1| exosome complex exonuclease 1 [Methanobacterium sp. AL-21]
gi|325331338|gb|ADZ10400.1| exosome complex exonuclease 1 [Methanobacterium sp. AL-21]
Length = 243
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 115/225 (51%), Gaps = 4/225 (1%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIGRLN 96
R D+R F + R G + A GSAY E G KV+ +V+GPRE + +M N L
Sbjct: 19 RADNRAFDELRKMKIEAGVLERADGSAYLEIGGNKVLAAVYGPRELFVRRLMQPNKAVLR 78
Query: 97 CNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSD 153
C + F+ R + G D + + S + +AL A+ LE FP++T+DVF V+E+ G
Sbjct: 79 CKYNMAPFSVDDRKRPGPDRRSVEISKLASQALTPAVFLEKFPRSTIDVFIEVIEAEGGT 138
Query: 154 LPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRY 213
I+ ASVALADAGI M D+V + + +++D E+ + IA MP
Sbjct: 139 RCAGITAASVALADAGIPMRDMVVACAAGKSDGKVILDLSEVEDKEGQADVPIAIMPRTG 198
Query: 214 EVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDE 258
E+T L + G + F +A+ L ++ + + ++ +K DE
Sbjct: 199 EITLLQMDGNLTEEEFEQALDLAINGCKIISEKQKAAIKNRYGDE 243
>gi|52550028|gb|AAU83877.1| ribonuclease PH [uncultured archaeon GZfos34H10]
Length = 242
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 117/226 (51%), Gaps = 4/226 (1%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
D R RGF + RP G + A GS Y E GN KVI V+GPRE + + +
Sbjct: 11 DGKRLSGRGFEELRPIKIEVGVLKRADGSCYFELGNNKVIAGVYGPREMHPRHFQNAKMA 70
Query: 94 RLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ + F+ R + G D + + S + KAL+ I+ E +PKT ++V+ VL+S
Sbjct: 71 VVKYRYNMAPFSVDDRKRPGPDRRSQEISMVSRKALDPVILRELYPKTAIEVYVEVLQSD 130
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
I+ ASVALADAGI M DLV+SV++ + +++D +E+++ + + IA +
Sbjct: 131 AGTRTAGINAASVALADAGIPMRDLVSSVAIGKIDGEVVLDLDAKEDNFGEADMPIAMIA 190
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAAS 256
+T L + G F ++L +D S K+ ++ ++ L E S
Sbjct: 191 RTNTITLLQMDGRLKKEEFERGLKLAMDGSRKIYELQKAALVEKYS 236
>gi|116754659|ref|YP_843777.1| exosome complex exonuclease Rrp41 [Methanosaeta thermophila PT]
gi|116666110|gb|ABK15137.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanosaeta
thermophila PT]
Length = 245
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 118/226 (52%), Gaps = 5/226 (2%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
D +R D R F + RP G + A GS Y E G+ KVI +V+GPRE + + N
Sbjct: 9 DGIRLDGRRFDELRPIKMEVGVLKRADGSCYMEMGDNKVIAAVYGPREVHPRHLQEVNRA 68
Query: 94 RLNCNVSYTTFATPVRGQ-GSDHKDF--SSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ + +F+ R + G D + + S + +ALE I+ FPK+ +D+F VL++
Sbjct: 69 IIRYRYNMASFSVEERRRPGPDRRSYELSKVSREALEPVILTSYFPKSVIDIFVEVLQAD 128
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
I+ ASVALADAGI M LV+S + + +++DP+ +E+++ + IA P
Sbjct: 129 AGTRTAGINAASVALADAGIPMRSLVSSCAAGKVDGQIVLDPMKDEDNFGQADMPIAITP 188
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAAS 256
+ E+T L + G + F +AM+L ++ KI R L E S
Sbjct: 189 T-GEITLLQMDGILTRDEFRQAMELAKKGCQEIYKIQRRVLIERYS 233
>gi|156537299|ref|XP_001606070.1| PREDICTED: exosome complex component MTR3-like [Nasonia
vitripennis]
Length = 284
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 117/228 (51%), Gaps = 14/228 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R DSR + R F + G V+ A GSAY E G TKVI S F PRE YS G + C
Sbjct: 39 RVDSRKHKELRKMFIKLGVVSQAKGSAYIEMGQTKVICSAFDPREIPNKTSYSTQGEIFC 98
Query: 98 NVSYTTFATPVRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDL 154
+ +FAT R Q ++ K++S ++ +ALE A+ FP VDV+ALVL++GGS L
Sbjct: 99 EFKFASFATCKRKGHQQDTEEKEYSLIMQRALEPAVCRHEFPNFQVDVYALVLDNGGSAL 158
Query: 155 PVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESY-----------QDGS 203
I AS+ALA+A + M+ +V +V+ LL+DP +EE+ G
Sbjct: 159 GAAIMGASLALANASVPMFGIVTAVTAGIYDDLLLLDPTDKEEALCLSVAKQKKLTNHGI 218
Query: 204 LMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
+M A + ++++ + G N +M+L + + I++ L
Sbjct: 219 IMQAMLLQHDQISEFFLVGSMDVDCVNNSMELLSKTCSDVHPILQQSL 266
>gi|126465758|ref|YP_001040867.1| ribosomal RNA-processing protein RRP41/SKI6 [Staphylothermus
marinus F1]
gi|126014581|gb|ABN69959.1| ribosomal RNA-processing protein RRP41/SKI6 [Staphylothermus
marinus F1]
Length = 240
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 115/221 (52%), Gaps = 4/221 (1%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIG 93
D LR D R ++ RP G + +A GSAY E+G TKVI +V+GPRE + + +
Sbjct: 10 DGLRHDGRKPNELRPIKMDVGVLKNADGSAYVEYGGTKVIAAVYGPREVYPRHLALPDRA 69
Query: 94 RLNCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ C F+T R + + + S ++ +ALE + E +P+TT+DVF VL++
Sbjct: 70 LIRCRYHMAPFSTSDRKSPAPSRREIELSKVIREALESLVFSELYPRTTIDVFIEVLQAD 129
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
G ++ AS+ALADAGI M DLVA V+V + L++D E+ Y + + I
Sbjct: 130 GGTRTTGLTAASLALADAGIPMRDLVAGVAVGKVDGVLVLDIDEVEDEYGEADMPIGYAA 189
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
E+ L + G + F EA+ L + ++ K M+ L
Sbjct: 190 GIDEIVLLQLNGVLTVEEFREALNLAKWGAEQIYKTMKETL 230
>gi|159040754|ref|YP_001540006.1| exosome complex exonuclease 1 [Caldivirga maquilingensis IC-167]
gi|157919589|gb|ABW01016.1| exosome complex exonuclease 1 [Caldivirga maquilingensis IC-167]
Length = 242
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 115/222 (51%), Gaps = 4/222 (1%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIG 93
D R D R + RP + G + +A+GSA +GNT V+ +V+GPRE + + +
Sbjct: 12 DGKRVDGRLPEEHRPVTMQVGVLPNANGSALVAYGNTVVLAAVYGPREPIPRYITVPDKA 71
Query: 94 RLNCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ F+T R + + + S ++ +ALE + LE +PK+T+DVF VL++
Sbjct: 72 VVRVRYHMAPFSTDDRKNPAPTRREIEISKVVKQALETVVFLEQYPKSTIDVFLEVLQAD 131
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
GS I+ AS+ALADAGI M DLV VSV + +++D E++Y DG L IA
Sbjct: 132 GSTRVTSITAASLALADAGIPMRDLVVGVSVGKINDTVIVDLNKLEDNYGDGDLPIAIAY 191
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
+ V + + G W ++L A+ + + MR LK
Sbjct: 192 RKNWVLLMQLDGVWKPSEVKRGLELAFKAAENIYRNMREVLK 233
>gi|395333563|gb|EJF65940.1| mRNA transport regulator 3 [Dichomitus squalens LYAD-421 SS1]
Length = 261
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 127/240 (52%), Gaps = 16/240 (6%)
Query: 27 PIFSGSDVDWLR------PDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGP 80
PIF + D R RG RP F + G +N A+GSAY E TK+ +V+GP
Sbjct: 20 PIFDSDEEDETRWKPGKPRKGRGARDIRPIFLKAGLINQANGSAYIETERTKIACAVYGP 79
Query: 81 RESKKAMMYSNIGRLNCNVSYTTFA-----TPVRGQGSDHKDFSSMLHKALEGAIILETF 135
R+SK +Y+ GRLN V + F+ P+R ++ + + + +AL A+ LE
Sbjct: 80 RQSK-TTVYNEKGRLNVEVKFAPFSCKRRRVPIRD--AEDRSVAVQIQQALVSAVRLELL 136
Query: 136 PKTTVDVFALVLESGGSD--LPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPV 193
PK+T+D+F +V+E+ G + + AS ALADAGI M LVAS S + +G+ + +DP
Sbjct: 137 PKSTIDIFIIVIENDGMEGCIASGSVAASAALADAGIEMLGLVASCSAAVVGEEIWLDPT 196
Query: 194 LEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
EEE G+L+++ MP+ +T + +G + + M+ C + + ++ L E
Sbjct: 197 EEEEKVSSGTLILSGMPALGTITNVWQSGSMAPEDAMKCMEACQERYTDIHAVIAQALLE 256
>gi|302691292|ref|XP_003035325.1| hypothetical protein SCHCODRAFT_50397 [Schizophyllum commune H4-8]
gi|300109021|gb|EFJ00423.1| hypothetical protein SCHCODRAFT_50397 [Schizophyllum commune H4-8]
Length = 259
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 121/237 (51%), Gaps = 12/237 (5%)
Query: 26 PPIFSGSDVDWLRPDS----RGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPR 81
PP++ DV +P + RG RP F R G ++ A+GSAY E K+ +V+GPR
Sbjct: 19 PPVYDDEDVP--QPSTTRSGRGELDIRPIFLRPGLISQANGSAYIEADKIKIACAVYGPR 76
Query: 82 ESKKAMMYSNIGRLNCNVSYTTFATPVRG---QGSDHKDFSSMLHKALEGAIILETFPKT 138
++K + YS GRLN V Y +AT R + ++ + +H+AL ++ LE PK+
Sbjct: 77 QNKN-VAYSEQGRLNVEVKYAPYATARRKAPLRDAEDRSIGVAIHQALLASVRLELLPKS 135
Query: 139 TVDVFALVLESGGSDLPVVISCASVALADA--GIMMYDLVASVSVSCLGKNLLIDPVLEE 196
TVD+F +++E+ G + + + + A A GI M LV+S S + G + +DP E
Sbjct: 136 TVDIFLVIIEADGKEASIASGAVAASAALADAGIEMLGLVSSCSAAVTGDKIWLDPSAAE 195
Query: 197 ESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
DG+++++CMP+ VT + +G E M C + ++ L E
Sbjct: 196 SEQADGTVILSCMPALDSVTSVWQSGRLPPQKALECMHACQQKCVDIHSVVAQALLE 252
>gi|327310389|ref|YP_004337286.1| exosome complex exonuclease Rrp41 [Thermoproteus uzoniensis 768-20]
gi|326946868|gb|AEA11974.1| exosome complex exonuclease Rrp41 [Thermoproteus uzoniensis 768-20]
Length = 245
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 115/225 (51%), Gaps = 7/225 (3%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIG 93
V+ R D R Q R G +++A GSA +GNT + +V+GPRE + S
Sbjct: 10 VEGRRADGRTPDQMREVKISVGVISNADGSAMVSYGNTTAVAAVYGPREMHPRHL-SLPD 68
Query: 94 RLNCNVSYTTFATPVRGQGSD------HKDFSSMLHKALEGAIILETFPKTTVDVFALVL 147
R V Y R + + + S +L +ALE AI LE FP++ +DVF ++
Sbjct: 69 RAVMRVRYHMAPFSTRDERKNPAPSRREIEISKVLREALEPAIFLEQFPRSRIDVFVEIV 128
Query: 148 ESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIA 207
++ GS ++ AS+ALADAG+ M DLV VSV + +++D E++Y +G + +
Sbjct: 129 QADGSTRVASLTAASLALADAGVPMRDLVIGVSVGLVNGTVVLDLNGLEDNYGEGDMPVG 188
Query: 208 CMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
MP+ +T L + G WS F EA++L + + + R LK
Sbjct: 189 YMPNLGRITLLQLDGSWSRDKFAEALKLAIKGAEYVYSKAREALK 233
>gi|332030317|gb|EGI70060.1| Exosome complex exonuclease MTR3 [Acromyrmex echinatior]
Length = 282
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 120/228 (52%), Gaps = 14/228 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R ++ R F +TG V+ A GSAY E GNTKVI SVF PRE + G L C
Sbjct: 37 RHDDRSDNELRNIFLKTGIVSQAKGSAYIEMGNTKVICSVFDPREIPNKTGFCMQGELFC 96
Query: 98 NVSYTTFATPVRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDL 154
+ +F+ R Q ++ K++S +L +ALE A+ L+ FP VDV+A VL++GGS L
Sbjct: 97 EFKFASFSHRKRKLHQQDAEEKEYSLILQRALEPAVCLQEFPNFQVDVYATVLDNGGSAL 156
Query: 155 PVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESY-----------QDGS 203
I AS+ALA+AG+ M+ LV + ++ L+DP EE++ G
Sbjct: 157 AAAIMAASLALANAGVPMFGLVTASTIGICKGTYLVDPTDIEENFCSTKAASDTTNDHGI 216
Query: 204 LMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
++ A +P +++++ V G + +M L A + ++ CL
Sbjct: 217 IVQAALPQHGQISEMFVIGSINMDTMEYSMDLLSKAHKDICPLLEQCL 264
>gi|357622504|gb|EHJ73955.1| mRNA transport regulator 3 [Danaus plexippus]
Length = 548
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 103/204 (50%), Gaps = 16/204 (7%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI 92
D + R R + R F RTG ++ A GS+Y E TKV SVF PRE YS +
Sbjct: 37 DENGRRKGGREMDEARTLFARTGMISQAKGSSYIELKRTKVACSVFDPREIVHQNEYSTL 96
Query: 93 GRLNCNVSYTTFATPVRGQ------GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALV 146
G+L C V Y F+ RG+ SD + S L KALE A+ FP +D+F +
Sbjct: 97 GQLYCEVKYAPFSC--RGERKALVPDSDERALSVALKKALEPAVCRHLFPNYQIDIFIYI 154
Query: 147 LESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESY------- 199
LE+ G+ LP I+ A +AL+DA + MYD++ + S++ G + +DP +EE
Sbjct: 155 LENDGACLPAAINAAGLALSDAAVPMYDIITASSLAISGDKVFVDPTDDEEQLAIRDHEG 214
Query: 200 -QDGSLMIACMPSRYEVTQLTVTG 222
G + ++ +P +V+ G
Sbjct: 215 VNHGVITMSMLPELQQVSDYRQIG 238
>gi|389748864|gb|EIM90041.1| ribosomal protein S5 domain 2-like protein [Stereum hirsutum
FP-91666 SS1]
Length = 264
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 123/228 (53%), Gaps = 9/228 (3%)
Query: 36 WLRPDSRGFHQ---CRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI 92
W D R Q RP F + G ++ A+GSAY E TK+ +V+GPR+SK YS
Sbjct: 35 WKAGDPRVGRQPLDIRPIFLKAGLISQANGSAYIEAERTKIACAVYGPRQSKNTS-YSEN 93
Query: 93 GRLNCNVSYTTFATPVRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
GRLN V ++ F+ R + ++ + + ++ +AL ++ LE PK+ +D+F V+E+
Sbjct: 94 GRLNVEVKFSPFSCATRRAPLRDAEDRSVAVLIQQALTPSVRLELLPKSVIDIFVTVIEN 153
Query: 150 GGSD--LPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIA 207
G++ + AS ALADAGI M LV S S S +GK++ +DP +E + +G+L+ A
Sbjct: 154 DGTEGCVAAASLAASTALADAGIEMLGLVTSCSSSLVGKDVWLDPTEQETTLAEGNLVFA 213
Query: 208 CMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAA 255
C+P+ VT + TG + M+ C + + +I L E A
Sbjct: 214 CIPALGLVTSVWETGRMLPSQAAQCMERCQERCTDIHQIAVQSLLENA 261
>gi|357625820|gb|EHJ76127.1| mRNA transport regulator 3 [Danaus plexippus]
Length = 306
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 93/172 (54%), Gaps = 8/172 (4%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI 92
D + R R + R F RTG ++ A GS+Y E TKV SVF PRE YS +
Sbjct: 37 DENGRRKGGREMDEARTLFARTGMISQAKGSSYIELKRTKVACSVFDPREIVHQNEYSTL 96
Query: 93 GRLNCNVSYTTFATPVRGQ------GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALV 146
G+L C V Y F+ RG+ SD + S L KALE A+ FP +D+F +
Sbjct: 97 GQLYCEVKYAPFSC--RGERKALVPDSDERALSVALKKALEPAVCRHLFPNYQIDIFIYI 154
Query: 147 LESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEES 198
LE+ G+ LP I+ A +AL+DA + MYD++ + S++ G + +DP +EE
Sbjct: 155 LENDGACLPAAINAAGLALSDAAVPMYDIITASSLAISGDKVFVDPTDDEEQ 206
>gi|161527940|ref|YP_001581766.1| exosome complex exonuclease 1 [Nitrosopumilus maritimus SCM1]
gi|259645400|sp|A9A5C9.1|ECX1_NITMS RecName: Full=Probable exosome complex exonuclease 1
gi|160339241|gb|ABX12328.1| exosome complex exonuclease 1 [Nitrosopumilus maritimus SCM1]
Length = 244
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 120/225 (53%), Gaps = 4/225 (1%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
D + R D R + R + G + +A GS+Y EFG+ K++V VFGPR+ K M ++
Sbjct: 12 DENGKRCDGRTVDEPRRIMIKAGGLKNADGSSYIEFGDNKILVGVFGPRDVHPKHMSDTD 71
Query: 92 IGRLNCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
G L F+ R + + + S ++ +ALE A++LE FP+T VDVF VL+
Sbjct: 72 TGILRVRYHMEPFSVGERKNPAPSRREIEISKVIKEALEPAVMLEKFPRTAVDVFIEVLQ 131
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ G ++ ASVALADAGI M D+VA+++ + +++D EE+ + I
Sbjct: 132 ADGGTRCAALTAASVALADAGIPMRDMVAAIAAGKVADTVILDVNNEEDQAGQADMPIGY 191
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
MP+ ++T L + G + + + +Q+ +D + ++ + L +
Sbjct: 192 MPNLEKITLLQLDGVLTPEEYKKCIQVGVDGCKLVYELQKKALND 236
>gi|407461957|ref|YP_006773274.1| exosome complex exonuclease 1 [Candidatus Nitrosopumilus koreensis
AR1]
gi|407045579|gb|AFS80332.1| exosome complex exonuclease 1 [Candidatus Nitrosopumilus koreensis
AR1]
Length = 244
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 120/225 (53%), Gaps = 4/225 (1%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
D + R D R + R + G + +A GSAY EFG+ K++V VFGPR+ K M ++
Sbjct: 12 DENGKRCDGRTVDEPRRIMIKAGGLKNADGSAYIEFGDNKILVGVFGPRDVHPKHMSNTD 71
Query: 92 IGRLNCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
G L F+ R + + + S ++ +ALE A++L+ FP+T VDVF VL+
Sbjct: 72 TGILRVRYHMEPFSVGERKNPAPSRREIEISKVIKEALEPAVMLDKFPRTAVDVFIEVLQ 131
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ G ++ ASVALADAGI M D+VA+++ + +++D EE+ + I
Sbjct: 132 ADGGTRCAALTAASVALADAGIPMRDMVAAIAAGKVADTVILDVNNEEDQAGQADMPIGY 191
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
MP+ ++T L + G + + + +Q+ +D + ++ + L +
Sbjct: 192 MPNLEKITLLQLDGVLTPEEYKKCVQVGVDGCKLVYELQKKALND 236
>gi|124027456|ref|YP_001012776.1| ribonuclease PH [Hyperthermus butylicus DSM 5456]
gi|254782534|sp|A2BKC0.1|ECX1_HYPBU RecName: Full=Probable exosome complex exonuclease 1
gi|123978150|gb|ABM80431.1| ribonuclease PH [Hyperthermus butylicus DSM 5456]
Length = 255
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 118/221 (53%), Gaps = 4/221 (1%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRL 95
+R D R Q RP G +++A GSA E+G T+VI +V+GPRE+ + + + +
Sbjct: 24 IRHDGRLPEQLRPIRMEVGVLSNADGSALVEYGGTRVIAAVYGPREAHPRHVALPDRAII 83
Query: 96 NCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
C F+T R + + + S ++ +ALE +I E +P+T +DV+ VL+S G
Sbjct: 84 RCRYHMAPFSTAERKTPAPTRREVELSKVIREALEAVVISELYPRTAIDVYMEVLQSDGG 143
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSR 212
I+ AS+ALADAGI M DLVA V+V + L++D E++Y + + +A PS
Sbjct: 144 TRTAAITAASLALADAGIAMRDLVAGVAVGKVDGVLVLDIDEIEDNYAEADMPVAMAPSL 203
Query: 213 YEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
+V L + G + F +A++L + + + L++
Sbjct: 204 DKVLLLQLNGVLTHDEFVKALELARKGIQVIYNLQKEALRK 244
>gi|428164846|gb|EKX33858.1| hypothetical protein GUITHDRAFT_49759, partial [Guillardia theta
CCMP2712]
Length = 232
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 118/227 (51%), Gaps = 23/227 (10%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATP 107
R V+ ASGSAY E G TKV+ +V GP+ + ++S GR++C V+ + F+
Sbjct: 15 RRKHMSVDVVDRASGSAYVESGRTKVVCTVHGPKTDTWSSLFSEHGRISCFVTISAFS-- 72
Query: 108 VRGQGSDHKDFSSM-----------LHKALEGAIILETFPKTTVDVFALVLESGGSDLPV 156
GSD + + AL+ AI L +PK+ ++V V+E+ G L
Sbjct: 73 ----GSDGERREERREEEERAAELGILPALQSAINLLKYPKSVIEVHVSVVEADGDLLSP 128
Query: 157 VISCASVALADAGIMMYDLVASVSVSCLGKN-LLIDP--VLEEESYQDGSLMIACMPSRY 213
I CAS+ALA AG+ MYDLVAS S++ K +++P L E DGSL ++ MP+R
Sbjct: 129 CIVCASLALAHAGVEMYDLVASSSLALRRKEGFMLEPGAGLTE---HDGSLSLSYMPNRR 185
Query: 214 EVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDEQE 260
EVTQL G+W AM++ L A +MR L + E+E
Sbjct: 186 EVTQLVQVGQWEQEEVARAMKVGLRACRSTHALMRLALLQHQEKEEE 232
>gi|170067614|ref|XP_001868552.1| exosome component 6 [Culex quinquefasciatus]
gi|167863716|gb|EDS27099.1| exosome component 6 [Culex quinquefasciatus]
Length = 246
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 113/211 (53%), Gaps = 11/211 (5%)
Query: 52 FRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQ 111
+ G V++A GSAY E GNTKVIVSVF PRE K + +G L C++ ++ FA R
Sbjct: 1 MKLGVVSTAKGSAYLELGNTKVIVSVFDPREIPKQNTFRELGELYCDLKFSPFACVHRKN 60
Query: 112 ---GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADA 168
++ + ++ + KAL+ + FP +D+FA VLE GS L VI+ A +AL+DA
Sbjct: 61 PQTDAEERSLAAAMTKALQPVVCRHLFPNFQIDIFANVLEDDGSVLGAVITAAGLALSDA 120
Query: 169 GIMMYDLVASVSVSCLGKNLLIDPVLEEE--------SYQDGSLMIACMPSRYEVTQLTV 220
I M+D+V + +V+ G + +DP L EE S G + +A + + + +++ +
Sbjct: 121 TISMFDIVTATTVAVYGDRIYLDPTLAEERLCLEGSRSGNHGVITLAKLHTLDQTSEIRL 180
Query: 221 TGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
G S A Q +A+ + +++ L
Sbjct: 181 AGNVSLDLLKNACQRLNEANNDVAPVVQQML 211
>gi|48477466|ref|YP_023172.1| exosome complex exonuclease Rrp41 [Picrophilus torridus DSM 9790]
gi|48430114|gb|AAT42979.1| ribonuclease PH [Picrophilus torridus DSM 9790]
Length = 239
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 119/224 (53%), Gaps = 11/224 (4%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES--KKAMMYSNI 92
D LR D R F++ RP TG V++A GSAY E+G K++V+V+ RE+ K A NI
Sbjct: 10 DGLRLDGRAFNEMRPIRITTGVVDNADGSAYIEWGANKIVVAVY-VREAYPKHA---QNI 65
Query: 93 GRLNCNVSYTT--FATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVL 147
+ Y F+ R + G D + + S ++ +ALE AI++E P+ +DV+ VL
Sbjct: 66 DKAIVKARYNMAGFSVEERKRPGPDRRTMEISKLISEALESAIMVERLPRAEIDVYIEVL 125
Query: 148 ESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIA 207
E+ ++ ASVA+ADAGI M DL + +++D +E++Y D + +A
Sbjct: 126 EADAGTRIASLTAASVAVADAGIPMKDLPVGCTAGKANGKVVLDLSKDEDNYGDADIPMA 185
Query: 208 CMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
+P ++ L + G+ S EAM++ L A + +I R L
Sbjct: 186 ILPKSGKIILLQLDGDVSEQELEEAMEMMLGAMKNISRIQREAL 229
>gi|254168259|ref|ZP_04875105.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
gi|197622768|gb|EDY35337.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
Length = 243
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 121/230 (52%), Gaps = 4/230 (1%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSN 91
D + LR D R +Q RP G + A GSA+ E+G K+I +V+GP E+ K + ++
Sbjct: 9 DDNGLRIDGRLPNQLRPIKMEVGVLKRADGSAFIEWGGNKIIAAVYGPHEAYPKHVQEAD 68
Query: 92 IGRLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ S F+ R + G D + + S ++ +ALE I +E +P+T++DV+ VL+
Sbjct: 69 RAIVRARYSMAPFSVDERKRPGPDRRAIELSKVISEALESVIFVEKYPRTSIDVYIEVLQ 128
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ I+ AS+ALADAGI M DL+ + + +++D EE+++ + +A
Sbjct: 129 ADAGTRVAGITVASLALADAGIPMRDLIVGCAAGKIDDVVVLDLNKEEDNFGQADVPMAI 188
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDE 258
MP E+ L + G+ S AM + +DA+ K+ ++ LK +E
Sbjct: 189 MPRTKEIALLQMDGDMSYEELTTAMDMAMDAAEKIHEMQVEALKRKYIEE 238
>gi|289595860|ref|YP_003482556.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
gi|289533647|gb|ADD07994.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
Length = 245
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 121/230 (52%), Gaps = 4/230 (1%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSN 91
D + LR D R +Q RP G + A GSA+ E+G K+I +V+GP E+ K + ++
Sbjct: 11 DDNGLRIDGRLPNQLRPIKMEVGVLKRADGSAFIEWGGNKIIAAVYGPHEAYPKHVQEAD 70
Query: 92 IGRLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ S F+ R + G D + + S ++ +ALE I +E +P+T++DV+ VL+
Sbjct: 71 RAIVRARYSMAPFSVDERKRPGPDRRAIELSKVISEALESVIFVEKYPRTSIDVYIEVLQ 130
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ I+ AS+ALADAGI M DL+ + + +++D EE+++ + +A
Sbjct: 131 ADAGTRVAGITVASLALADAGIPMRDLIVGCAAGKIDDVVVLDLNKEEDNFGQADVPMAI 190
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDE 258
MP E+ L + G+ S AM + +DA+ K+ ++ LK +E
Sbjct: 191 MPRTKEIALLQMDGDMSYEELTTAMDMAMDAAEKIHEMQVEALKRKYIEE 240
>gi|328793187|ref|XP_623498.2| PREDICTED: exosome complex exonuclease MTR3-like isoform 1 [Apis
mellifera]
Length = 270
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 117/229 (51%), Gaps = 17/229 (7%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+R D R ++ R F +TG V+ A GSAY E GNTKV+ SVF PRE Y + G +
Sbjct: 36 IRNDKRSNNEMRKIFLKTGIVSQAKGSAYIELGNTKVVCSVFDPRELSNRNGYCSQGEIY 95
Query: 97 CNVSYTTFATPVRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSD 153
C + F+ R Q ++ K +S +L +ALE A FP VDV+A+VL++ GS
Sbjct: 96 CEFKFAPFSCQKRKIHQQDAEEKQYSLILQRALEPA---HEFPNFQVDVYAMVLDNAGSS 152
Query: 154 LPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEE-----------SYQDG 202
L I AS ALA+AG+ M+ LV + ++ + L+DP EE + G
Sbjct: 153 LAAAIMAASTALANAGVPMFGLVTASTIGIYDNHYLMDPTDTEEVICNTQPDNQDDFNHG 212
Query: 203 SLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
+ +A + +V+++ + G T +A ++ + + +++ CL
Sbjct: 213 IITLASLAQHNQVSEVFLIGSIDTNSIIQATEILTTVNKDICPVLQQCL 261
>gi|296243060|ref|YP_003650547.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermosphaera
aggregans DSM 11486]
gi|296095644|gb|ADG91595.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermosphaera
aggregans DSM 11486]
Length = 249
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 112/221 (50%), Gaps = 4/221 (1%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIG 93
D R D R + RP + G + +A+GSA E+G TKV+ +VFGPRE+ + + +
Sbjct: 17 DGTRLDGRRLDELRPVKIKVGVLKNANGSALVEYGGTKVLAAVFGPREALPRHIALPDRA 76
Query: 94 RLNCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
L F+T R + + + S ++ +ALE + E FP+T++D+F VL++
Sbjct: 77 TLRVRYHMAPFSTSERKSPAPSRREIELSKVIREALESVVFSEQFPRTSIDIFIEVLQAD 136
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
G ++ ASVALADAGI M DLV V+V + NL++D E+ Y + L + P
Sbjct: 137 GGTRTAGLTAASVALADAGIPMKDLVIGVAVGKIEGNLVLDISELEDEYGEADLPLGIAP 196
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
+ E+ L + G + ++L + KI + L
Sbjct: 197 NIGEIVLLQLNGVLTPEELKAGIELAWKGVDSIYKIAKEAL 237
>gi|119872348|ref|YP_930355.1| exosome complex exonuclease Rrp41 [Pyrobaculum islandicum DSM 4184]
gi|254782537|sp|A1RST0.1|ECX1_PYRIL RecName: Full=Probable exosome complex exonuclease 1
gi|119673756|gb|ABL88012.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum islandicum
DSM 4184]
Length = 246
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 119/235 (50%), Gaps = 17/235 (7%)
Query: 27 PIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKK 85
P+F + +R D R Q R G V++A GSA +G T + +V+GPRE +
Sbjct: 7 PLFQ----NGVRADGRAPDQMREVNITVGIVSNADGSAMVSYGATTAVAAVYGPREMHPR 62
Query: 86 AMMYSNIGRLNCNVSYTTFAT--------PVRGQGSDHKDFSSMLHKALEGAIILETFPK 137
+ + G + F+T P R + + S +L +ALE A++LE +P+
Sbjct: 63 HLSLPDRGVMRVRYHMAPFSTKDERKSPTPTRRE----IEISKILREALEPAVVLEQYPR 118
Query: 138 TTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEE 197
+ +DVF +L++ GS ++ AS+ALADAG+ M DLV VSV + +++D E+
Sbjct: 119 SRIDVFIEILQADGSTRVASLTAASLALADAGVYMRDLVIGVSVGLVDGAVVLDLNGLED 178
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
Y +G L + MP+ T L + G W+ F EA+ L + + + + R LK
Sbjct: 179 QYGEGDLPVGYMPNLKRFTLLQLDGAWTRDKFLEALNLAIKGAEFVYQKARDALK 233
>gi|363548435|sp|Q975G8.2|ECX1_SULTO RecName: Full=Probable exosome complex exonuclease 1
gi|342306198|dbj|BAK54287.1| exosome core subunit Rrp41 [Sulfolobus tokodaii str. 7]
Length = 243
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 109/204 (53%), Gaps = 4/204 (1%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRL 95
LR D R + RP G + +A GSA E GNTKVI +V+GP+E + + + L
Sbjct: 15 LRLDGRKPDEMRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDRAVL 74
Query: 96 NCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
T F+T R + + + S ++ +ALE I++E FP+T +DVF VL++
Sbjct: 75 RVRYHMTPFSTDERKNPAPSRREIELSKVIREALESTILVELFPRTVIDVFMEVLQADAG 134
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSR 212
V + AS+ALADAGI M DL+A V+V L++D E+ + + + +A MPS
Sbjct: 135 TRLVSLMAASMALADAGIPMRDLIAGVAVGKADGVLVLDLNEPEDMWGEADMPVAMMPSL 194
Query: 213 YEVTQLTVTGEWSTPHFNEAMQLC 236
+V L + G + F +A+++
Sbjct: 195 KQVALLQLNGNMTPQEFRQALEMA 218
>gi|15920655|ref|NP_376324.1| exosome complex exonuclease Rrp41 [Sulfolobus tokodaii str. 7]
Length = 247
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 109/204 (53%), Gaps = 4/204 (1%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRL 95
LR D R + RP G + +A GSA E GNTKVI +V+GP+E + + + L
Sbjct: 19 LRLDGRKPDEMRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDRAVL 78
Query: 96 NCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
T F+T R + + + S ++ +ALE I++E FP+T +DVF VL++
Sbjct: 79 RVRYHMTPFSTDERKNPAPSRREIELSKVIREALESTILVELFPRTVIDVFMEVLQADAG 138
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSR 212
V + AS+ALADAGI M DL+A V+V L++D E+ + + + +A MPS
Sbjct: 139 TRLVSLMAASMALADAGIPMRDLIAGVAVGKADGVLVLDLNEPEDMWGEADMPVAMMPSL 198
Query: 213 YEVTQLTVTGEWSTPHFNEAMQLC 236
+V L + G + F +A+++
Sbjct: 199 KQVALLQLNGNMTPQEFRQALEMA 222
>gi|383319305|ref|YP_005380146.1| archaeal exosome-like complex exonuclease 1 [Methanocella conradii
HZ254]
gi|379320675|gb|AFC99627.1| archaeal exosome-like complex exonuclease 1 [Methanocella conradii
HZ254]
Length = 252
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 115/225 (51%), Gaps = 7/225 (3%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIG 93
VD R D RG ++ RP F+ G + A GS Y EFG KV+ +V+GPRE + N
Sbjct: 9 VDGKRLDGRGLNELRPIRFKAGVLKRADGSCYLEFGGNKVMAAVYGPREVHPRHL-QNAS 67
Query: 94 RLNCNVSYTTFATPVRGQ---GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
R Y A V + G D + + S + +ALE I+ E +P++ +D+F +L+
Sbjct: 68 RAIVRYRYNMAAFSVEERKRPGPDRRSIEISKVSREALESVIMQELYPRSAIDIFVEILQ 127
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ I+ ASVALADAGI M LV++ +V + L++D +E++Y L +A
Sbjct: 128 ADAGTRVAGINAASVALADAGIPMRCLVSACAVGKVDGELVLDLNKDEDNYGQADLPVA- 186
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
M E+T + G + F A+ + ++ KL ++ R L E
Sbjct: 187 MNQFGEITLCQMDGHMTEEEFGRALDMAIEGCKKLHQMQRQALIE 231
>gi|52550472|gb|AAU84321.1| ribonuclease PH [uncultured archaeon GZfos9D1]
Length = 245
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 115/221 (52%), Gaps = 4/221 (1%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
D R D RGF + RP G + A GS Y E GN KVI +V+GPRE + + +
Sbjct: 10 DGKRLDGRGFDELRPIKIEVGVLKRADGSCYLELGNNKVIAAVYGPREMHPRHAQDAKMA 69
Query: 94 RLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ + F+T R + G D + + S + +A + I+ E +PK +DV+ +L+S
Sbjct: 70 VVKFRYNMAPFSTDDRKRPGPDRRSVEISKVCREAFDPVIMRELYPKMGIDVYVELLQSD 129
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
I+ AS+ALADAGI M DLV+S++V +G +++D E++ + + IA +
Sbjct: 130 AGTRTAGINAASIALADAGIPMKDLVSSIAVGKIGGEMVLDLNAAEDNNGEADMPIAMIA 189
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
+T L + G + F ++L + A ++ ++ R+ L
Sbjct: 190 RTNTITALQMDGRMTQEEFGRGLKLAMGACHQIYELQRAAL 230
>gi|320167599|gb|EFW44498.1| exosome component 4 [Capsaspora owczarzaki ATCC 30864]
Length = 252
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 11/227 (4%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIG 93
+ LR D R ++ R R G A GSAY E GNTK++ +V+GP E S+K +
Sbjct: 12 EGLRIDGRRPNELRRIQARVGVFMQADGSAYIEQGNTKILATVYGPHEVSRKNKPLHDRA 71
Query: 94 RLNCNVSYTTFAT-----PVRGQGSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALV 146
+NC +FAT PVR +D + D ++ + A EGA++ + +P++ +D+F V
Sbjct: 72 IINCEYRVASFATAERKKPVR---TDKRALDLAAAVRGAFEGAVMTQLYPRSQIDIFLQV 128
Query: 147 LESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMI 206
L+S G + V I+ A++AL DAGI M D V + SV C+ L+D E+S L +
Sbjct: 129 LQSDGGNRAVCINAATLALMDAGIAMKDFVCACSVGCIDDTPLLDINYIEDSAGGPDLTV 188
Query: 207 ACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
A + + + + F++ ++L +D + I+ S + E
Sbjct: 189 AVLARSRKTVLVEMDSRLHIDRFDDVLRLAIDGCQAIHSILDSAMVE 235
>gi|390597939|gb|EIN07338.1| ribosomal protein S5 domain 2-like protein [Punctularia
strigosozonata HHB-11173 SS5]
Length = 266
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 118/220 (53%), Gaps = 9/220 (4%)
Query: 40 DSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNV 99
+ RG RP F + G ++ A+GSAY E TK++ +V+GPR+S K+ YS G+LN V
Sbjct: 41 NGRGASDIRPIFLKAGLISQANGSAYIETERTKLVCAVYGPRQS-KSTSYSEKGKLNVEV 99
Query: 100 SYTTFATPVR---GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPV 156
+ F+ R + ++ + + ++ ++L A+ LE FPK+T+D+F ++E+ G + V
Sbjct: 100 KFAPFSCTRRRVPNRDAEDRPIAMLIQRSLNAAVRLELFPKSTIDIFITIIENDGIEGCV 159
Query: 157 V--ISCASVALADAGIMMYDLVASVSVSC---LGKNLLIDPVLEEESYQDGSLMIACMPS 211
AS ALA A I M +V S S + +GK L +DP E G L++AC+P+
Sbjct: 160 ASGTVAASTALAQARIEMLGMVMSCSAANTADVGKELWLDPTDAESRLASGILVLACLPA 219
Query: 212 RYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
VT + +G+ + M+ C + A + ++ L
Sbjct: 220 LGIVTNVWQSGKMIPARAIDCMKACQERCADIHSVVAQAL 259
>gi|312370650|gb|EFR18995.1| hypothetical protein AND_23239 [Anopheles darlingi]
Length = 261
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 103/190 (54%), Gaps = 11/190 (5%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATP 107
R + G V++A GSAY E GNTK IVSVF PRE K Y +G L C+ ++ FA+
Sbjct: 6 RMCILKVGVVSTAKGSAYIELGNTKAIVSVFDPREIPKQSKYCALGELYCDFKFSPFASH 65
Query: 108 VRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVA 164
+R + + ++ L AL A+ FP +DVFA VLE GS L VI+ A +A
Sbjct: 66 LRKTPQSDTRGRSLAAALASALNPAVCRHLFPNLQLDVFANVLEDDGSVLAAVITAAGLA 125
Query: 165 LADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESY--------QDGSLMIACMPSRYEVT 216
LADA I M+D+V + + LG +L+DP EEE G +M+A +P+ +V
Sbjct: 126 LADACIPMFDIVTATTAGILGDRILVDPTAEEERLCMEGFTRDNHGIVMLAKLPTLDQVP 185
Query: 217 QLTVTGEWST 226
++ +G S
Sbjct: 186 EIRHSGSVSV 195
>gi|424819695|ref|ZP_18244762.1| 3' exoribonuclease [Candidatus Parvarchaeum acidophilus
ARMAN-5_'5-way FS']
gi|326422491|gb|EGD71888.1| 3' exoribonuclease [Candidatus Parvarchaeum acidophilus
ARMAN-5_'5-way FS']
Length = 236
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 121/229 (52%), Gaps = 8/229 (3%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLN 96
R D R F++ RP TG V +A GSA GNT+ I +V+GP E K + + + G +
Sbjct: 5 RFDKRAFNELRPMEAETGVVPNAKGSARFRIGNTEAIAAVYGPEEVKPRHIEKVDRGVIV 64
Query: 97 CNVSYTTFATPVRGQ-GSDHKDF--SSMLHKALEGAIILETFPKTTVDVFALVLESGGSD 153
C F+ P R + G D +D S ++ AL AIILE P+ ++V + ++
Sbjct: 65 CKYDMLPFSVPDRAKPGMDRRDIEISQVITNALNRAIILEDMPRAMINVRVYITQADAGT 124
Query: 154 LPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGS----LMIACM 209
++ AS+A ADAG+ M DLVA+V+ +G ++ +D EEE + +G + IA +
Sbjct: 125 RCASLTAASMACADAGLPMRDLVAAVAAGKIGDHVCLDLSKEEEDFHEGEGATDVPIAFL 184
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDE 258
PS+ E+ L + G S + +++ + + K+ ++ + LK S+E
Sbjct: 185 PSKNEILLLQLDGRVSRDELKKVIEVGKEGAMKIYELEKEALKRRFSNE 233
>gi|383858041|ref|XP_003704511.1| PREDICTED: exosome complex component MTR3-like [Megachile
rotundata]
Length = 274
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 119/228 (52%), Gaps = 14/228 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R ++ R F +TG V+ A GSAY E G+TKV+ SVF PRE Y G + C
Sbjct: 37 RSDKRTNNEIRKIFLKTGVVSQAKGSAYIEMGDTKVVCSVFDPREIPNKNGYCVQGEIYC 96
Query: 98 NVSYTTFATPVRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDL 154
+ +F+ R Q ++ K +S +L +ALE A+ L FP VDV+A+VL++ GS L
Sbjct: 97 EFKFASFSCQKRKIHQQNAEEKQYSLILQRALEPAVCLHEFPNFQVDVYAMVLDNAGSAL 156
Query: 155 PVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEES-----------YQDGS 203
I+ AS ALA AG+ M+ LV + ++ G L+DP EE+ + G
Sbjct: 157 AAAITAASTALASAGVPMFGLVTASTIGIYGDCFLMDPTDTEETMCNTTSDTKNNFNHGI 216
Query: 204 LMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
+ +A +P +V+++ + G+ T A + + + +++ CL
Sbjct: 217 ITLASLPQHGQVSEIFLIGDIDTDSIMRATDVLTATNKDICPVVQQCL 264
>gi|52548652|gb|AAU82501.1| ribonuclease PH [uncultured archaeon GZfos18B6]
Length = 242
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 115/226 (50%), Gaps = 4/226 (1%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
D R RGF + RP G + A GS Y E GN K I +V+GPRE + + +
Sbjct: 11 DGKRLSGRGFEELRPIKIDVGVLKRADGSCYFELGNNKAIAAVYGPREMHPRHFQNAKMA 70
Query: 94 RLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ + F+ R + G D + + S + KAL+ I+ E +PKT ++V+ VL+S
Sbjct: 71 VVKYRYNMAPFSVDDRKRPGPDRRSQEISMVSRKALDPVILRELYPKTAIEVYVEVLQSD 130
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
I+ ASVALADAGI M DLV+SV++ + +++D +E+++ + + IA +
Sbjct: 131 AGTRTAGINAASVALADAGIPMKDLVSSVAIGKIDGEVVLDLDAKEDNFGEADMPIAMVA 190
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAAS 256
+T L + G F +QL + K+ ++ ++ L E S
Sbjct: 191 RTNTITLLQMDGRLKKEEFERGLQLAMTGCRKIYELQKAALVEKYS 236
>gi|52352385|gb|AAU43674.1| ribonuclease PH [uncultured archaeon GZfos26D8]
Length = 247
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 116/221 (52%), Gaps = 4/221 (1%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
D R D RGF + RP G + A GS Y E G+ KVI +V+GPRE + + +
Sbjct: 10 DGKRLDGRGFDELRPIKIEVGVLKRADGSCYLELGDNKVIAAVYGPREMHPRHAQDAKMA 69
Query: 94 RLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ + F+T R + G D + + S + +A + I+ E +PKT ++V+ +L+S
Sbjct: 70 VVKFRYNMAPFSTDDRKRPGPDRRSVEISKVCREAFDPVIMRELYPKTGIEVYVELLQSD 129
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
I+ AS+ALADAGI M DLV+S++V +G +++D E++ + + IA +
Sbjct: 130 AGTRTAGINAASIALADAGIPMKDLVSSIAVGKIGGEMVLDLNAAEDNNGEADMPIAMIA 189
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
+T L + G + F ++L + A ++ ++ R+ L
Sbjct: 190 RTNTITALQMDGRLTKEEFGRGLKLAMGACHQIYELQRTAL 230
>gi|432328765|ref|YP_007246909.1| archaeal exosome-like complex exonuclease 1 [Aciduliprofundum sp.
MAR08-339]
gi|432135474|gb|AGB04743.1| archaeal exosome-like complex exonuclease 1 [Aciduliprofundum sp.
MAR08-339]
Length = 246
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 122/231 (52%), Gaps = 4/231 (1%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSN 91
D + LR D R +Q RP G + A GSAY E+G K++ +V+GP E+ K + ++
Sbjct: 11 DDNGLRIDGRLPNQLRPIKMEVGVLERADGSAYIEWGGNKIMAAVYGPHEAYPKHVQEAD 70
Query: 92 IGRLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ S F+ R + G D + + S ++ +AL I +E +P+T++DV+ VL+
Sbjct: 71 RAIVRARYSMAPFSVDERKRPGPDRRSIELSKVISEALTSVIFVEKYPRTSIDVYIEVLQ 130
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ I+ AS+ALADAGI M DL+ + + +++D EE++Y + +A
Sbjct: 131 ADAGTRVAGITVASLALADAGIPMRDLIVGCAAGKVDDVVVLDLNKEEDNYGQADVPMAI 190
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDEQ 259
+P E+ L + G+ + AM++ +DA+ K+ ++ LK +E+
Sbjct: 191 LPRTGEIALLQMDGDLTYEELTTAMEMAMDAAKKIHEMQVEALKRKYINEE 241
>gi|52549121|gb|AAU82970.1| ribonuclease PH [uncultured archaeon GZfos24D9]
Length = 242
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 115/227 (50%), Gaps = 6/227 (2%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
D R RGF + RP G + A GS Y E GN K + +V+GPRE + N R
Sbjct: 11 DGKRLSGRGFEELRPIKIEVGLLKRADGSCYFELGNNKALAAVYGPREMH-PRHFQNAKR 69
Query: 95 LNCNVSYTT--FATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
Y F+ R + G D + + S + KAL+ I+ E +PKT ++V+ VL+S
Sbjct: 70 AVVKYRYNMAPFSVDDRKRPGPDRRSQEISMVSRKALDPVILRELYPKTAIEVYVEVLQS 129
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACM 209
I+ ASVALADAGI M DLV+SV++ + +++D +E+++ + + IA +
Sbjct: 130 DAGTRTAGINAASVALADAGIPMRDLVSSVAIGKIDGEVVLDLDAKEDNFGEADVPIAMI 189
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAAS 256
+T L + G F ++L ++ K+ ++ ++ L E S
Sbjct: 190 ARTNTITLLQMDGRLKKEEFERGLKLAMNGCRKIYELQKAALVEKYS 236
>gi|391346094|ref|XP_003747314.1| PREDICTED: exosome complex component MTR3-like [Metaseiulus
occidentalis]
Length = 271
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 113/223 (50%), Gaps = 9/223 (4%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R + RP F +G V+ ASGS Y E G+TKV+ +VFGPRE + +S +L C
Sbjct: 34 RKDGRRDEELRPRIFESGLVSDASGSGYVEQGSTKVVAAVFGPREVTRRKEFSLKAQLRC 93
Query: 98 NVSYTTFATPVRGQGSD---HKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDL 154
++ FATP Q + + +SS L ++L+ + L +PK ++D+ LE+ G L
Sbjct: 94 VFTFEPFATPGGRQENISLLEQRYSSWLEESLKPVVQLRRYPKASIDIRVTCLENDGGVL 153
Query: 155 PVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQD------GSLMIAC 208
++ +ALA +GI +DLV V++ G +L+DP EE G++ +
Sbjct: 154 AAALTACGIALATSGIETFDLVIGVNLRAHGDRVLMDPSHAEEDAAPSREGTYGNVTLGF 213
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
MP ++T L TG+ + + + + + +M CL
Sbjct: 214 MPVLCQITGLLQTGDSEPATLCQQISSLIKIAHGVKPLMEECL 256
>gi|393245504|gb|EJD53014.1| ribosomal protein S5 domain 2-like protein [Auricularia delicata
TFB-10046 SS5]
Length = 255
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 129/247 (52%), Gaps = 16/247 (6%)
Query: 16 SPIDPTRKTRP-----PIFSGSDVDW-LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFG 69
S ID R T P P++ + D + R RP + +TG + A+GSAY E
Sbjct: 3 SGIDRRRITGPDESFAPVYEDAQQDEPMGRAGRAPRDIRPIYLQTGLITQANGSAYIETE 62
Query: 70 NTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVR---GQGSDHKDFSSMLHKAL 126
K+ +V+GPR+ K A YS+ G+LN V + FA R + ++ + ++++ +AL
Sbjct: 63 RAKIACAVYGPRQPKNAA-YSDKGKLNVEVKFAPFACRTRRVPNKDAEDRSIANLVQQAL 121
Query: 127 EGAIILETFPKTTVDVFALVLESGG--SDLPVVISCASVALADAGIMMYDLVASVSVSCL 184
A+ LE PK+++D+F +LE+ G + + AS ALA AGI M+ LV + + S +
Sbjct: 122 LPAVRLELLPKSSLDIFVTILEADGLAGAVAAASTAASAALAHAGIEMFGLVTACAASVV 181
Query: 185 GKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPH----FNEAMQLCLDAS 240
G + +DP +E++ G+L++ACMP+ VT + TG P NE + C D
Sbjct: 182 GDEVWLDPDEDEQARGRGTLVLACMPALGSVTSVWQTGRLRVPEALQCMNECQERCTDVH 241
Query: 241 AKLGKIM 247
+ K +
Sbjct: 242 FVVAKAL 248
>gi|315427141|dbj|BAJ48756.1| exosome complex component RRP41 [Candidatus Caldiarchaeum
subterraneum]
gi|315427160|dbj|BAJ48774.1| exosome complex component RRP41 [Candidatus Caldiarchaeum
subterraneum]
gi|343485775|dbj|BAJ51429.1| exosome complex component RRP41 [Candidatus Caldiarchaeum
subterraneum]
Length = 246
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 110/224 (49%), Gaps = 4/224 (1%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
D + LR D R + R G + GSAY E G T++ V GPRE K + +
Sbjct: 11 DENGLRVDGRRPDEMRKMRMEVGVLEKTDGSAYVELGGTRIYAGVIGPREVHPKHLELPD 70
Query: 92 IGRLNCNVSYTTFATPVR---GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
G +NC +F+ R G + S ++ +ALE + LE FP+ +D+F V++
Sbjct: 71 KGVINCRYHMASFSVDERKPLGMTRREIELSKVIREALETVVFLEEFPRMMIDIFVEVIQ 130
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ G I+ AS+ALADAGI M D++A+++V + L++D +E+ Y + + +A
Sbjct: 131 ADGGTRTAGITAASLALADAGIPMADMIAAIAVGKVDGVLVLDINEQEDKYGEADMPVAI 190
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
P + L + G + ++ +++ A K+ + LK
Sbjct: 191 APHLNSIVLLQLNGRMTPEEVDKGLEMAQQAVQKIHHMQIEALK 234
>gi|332796515|ref|YP_004458015.1| exosome complex exonuclease 1 [Acidianus hospitalis W1]
gi|332694250|gb|AEE93717.1| exosome complex exonuclease 1 [Acidianus hospitalis W1]
Length = 243
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 118/228 (51%), Gaps = 4/228 (1%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRL 95
LR D R + RP G + +A GSA E GNTK++ +V+GPRE + + N L
Sbjct: 15 LRLDGRRPDELRPMKMEVGVLKNADGSAIVEVGNTKILAAVYGPREMHPRHLALPNRAVL 74
Query: 96 NCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
T F+T R + + + S ++ +ALE I++E FP+T++DVF VL++
Sbjct: 75 RVRYHMTPFSTDERKNPAPSRREIELSKVIREALESQILVEQFPRTSIDVFMEVLQADAG 134
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSR 212
+ AS+A+ DAGI + DL+A+V+V +++D E+ + + + +A MPS
Sbjct: 135 TRLASLMAASLAVVDAGIPVRDLIAAVAVGKADGVVVLDLNEPEDMWGEADMPVAMMPSI 194
Query: 213 YEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDEQE 260
++ L + G + F + M+L + + + + LK ++ +E
Sbjct: 195 GQINLLQLNGNMTPEEFRQGMELAMKGINIIYNLEKETLKNKYAELKE 242
>gi|337283874|ref|YP_004623348.1| exosome complex exonuclease Rrp41 [Pyrococcus yayanosii CH1]
gi|334899808|gb|AEH24076.1| exosome complex exonuclease Rrp41 [Pyrococcus yayanosii CH1]
Length = 249
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 123/225 (54%), Gaps = 4/225 (1%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSN 91
D + R D R ++ RP G + +A GSAY E+G K++ +V+GPRE K + +
Sbjct: 12 DENGRRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIHPKHLQRPD 71
Query: 92 IGRLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
L + F+ R + G D + + S ++ ALE A++LE FP+T +D+F VL+
Sbjct: 72 RAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALLLELFPRTAIDIFIEVLQ 131
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ I+ AS+ALADAGI M DLVA+ + + +++D EE++Y + + +A
Sbjct: 132 ADAGTRVAGITAASLALADAGIPMKDLVAACAAGKIEGQIVLDLNKEEDNYGEADVPVAI 191
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
MP + ++T L + G + F EA++L + + + + R LKE
Sbjct: 192 MPMKNDITLLQMDGYLTREEFIEAVKLAIKGAKAVYQKQREALKE 236
>gi|171185834|ref|YP_001794753.1| exosome complex exonuclease Rrp41 [Pyrobaculum neutrophilum V24Sta]
gi|254782538|sp|B1Y978.1|ECX1_THENV RecName: Full=Probable exosome complex exonuclease 1
gi|170935046|gb|ACB40307.1| exosome complex exonuclease 1 [Pyrobaculum neutrophilum V24Sta]
Length = 246
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 116/235 (49%), Gaps = 17/235 (7%)
Query: 27 PIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-K 85
P+ G +R D R Q R G +++A GSA +G T + +V+GPRE +
Sbjct: 7 PLLQGG----VRADGRAPDQMREVQISVGVISNADGSAMVSYGATTAVAAVYGPREMHPR 62
Query: 86 AMMYSNIGRLNCNVSYTTFAT--------PVRGQGSDHKDFSSMLHKALEGAIILETFPK 137
+ + G + F+T P R + + S +L +ALE A++LE +P+
Sbjct: 63 HLSLPDRGVMRVRYHMAPFSTKDERKSPTPSRRE----IEISKVLREALEPAVMLEQYPR 118
Query: 138 TTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEE 197
+ +DVF +L++ GS ++ AS+ALADAGI M DLV VSV + +++D E+
Sbjct: 119 SRIDVFIEILQADGSTRVASLTAASLALADAGIYMRDLVIGVSVGLVDGTVVLDLNGLED 178
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
Y +G L + MP+ T L + G W EA+ L + + + + R LK
Sbjct: 179 QYGEGDLPVGYMPNLRRYTLLQLDGAWGRDKLLEALNLAVKGAEFVYQKARDALK 233
>gi|257076444|ref|ZP_05570805.1| exosome complex exonuclease Rrp41 [Ferroplasma acidarmanus fer1]
Length = 240
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 117/224 (52%), Gaps = 11/224 (4%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES--KKAMMYSNI 92
D LR D R ++ RP +TG V A GSA+ E+G K+IV+V+ RE+ K A NI
Sbjct: 11 DGLRLDGRSLNEMRPIKIQTGVVERADGSAFIEWGANKIIVAVY-VREAYPKHA---QNI 66
Query: 93 GRLNCNVSYTTFATPVRGQ---GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVL 147
R Y V + G D + + S ++ +AL AI+LE P+ +DVF VL
Sbjct: 67 DRAIVKARYNMSGYSVEERKRPGPDRRTMEISKVVSEALSSAIVLEKLPRAEIDVFIQVL 126
Query: 148 ESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIA 207
E+ ++ +SVA+ADAG+ M DLV + +++D +E+++ + +A
Sbjct: 127 EADAGTRIASLTASSVAVADAGVPMRDLVVGCTAGKADGKIVLDLSKDEDNFGQADIPMA 186
Query: 208 CMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
+P +V L + G+ + FNEA + +DA ++ ++ R+ L
Sbjct: 187 ILPRTGKVVLLQLDGDVTEEEFNEATSMMMDAMPRISELQRNAL 230
>gi|218884635|ref|YP_002429017.1| putative exosome complex exonuclease 1 [Desulfurococcus
kamchatkensis 1221n]
gi|218766251|gb|ACL11650.1| Probable exosome complex exonuclease 1 [Desulfurococcus
kamchatkensis 1221n]
Length = 242
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 113/221 (51%), Gaps = 4/221 (1%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIG 93
D LR D R + RP G + +A+GSA E+GNTK + +V+GPRE+ K + +
Sbjct: 10 DGLRIDGRKPEELRPVRIALGVLKNANGSALVEYGNTKALAAVYGPREALPKHISLPDRA 69
Query: 94 RLNCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
L F+T R + + + S ++ +ALE + FP+ ++DVF +L++
Sbjct: 70 ILRVRYHMAPFSTTERKSPAPSRREIELSKVIREALESVVFTSQFPRASIDVFIEILQAD 129
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
G ++ AS+ALADAGI M DLV V+V + L++D E+ Y + L + MP
Sbjct: 130 GGTRTTGLTAASLALADAGIPMRDLVIGVAVGKVDGVLVLDINELEDEYGEADLPVGIMP 189
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
+ E+ L + G ++ F +A+ + ++ K + +
Sbjct: 190 NTGEIVLLQLNGVLTSGEFKQALDMAYKGVEQIYKTAKEAM 230
>gi|332376931|gb|AEE63605.1| unknown [Dendroctonus ponderosae]
Length = 269
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 108/212 (50%), Gaps = 9/212 (4%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATP 107
R + +TG + A GSAY E G+TKVIVSVF PRE + Y G + C Y F+
Sbjct: 47 RKIYLQTGVITQAKGSAYIEIGDTKVIVSVFDPREIPNRIDYGLKGEVYCEFKYAPFSCK 106
Query: 108 VR---GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVA 164
R Q ++ K S ++ KALE + L P VDV+A+VLE GS L I VA
Sbjct: 107 KRMMHQQNNEEKQSSDIMRKALESTVCLHELPNFQVDVYAMVLEEDGSALSAAIIAGGVA 166
Query: 165 LADAGIMMYDLVASVSVSCLGKNLLIDPVLEEE-----SYQDGSLMIACMPSRYEVTQLT 219
L AG+ MYD + SV++ + LI+P ++ S +G ++++ + S+ ++ Q
Sbjct: 167 LTLAGVPMYDQITSVTLG-VRNGALIEPPFDDSGKEPPSCDNGLVVLSKLHSQTQICQFY 225
Query: 220 VTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
G S + + +++ + I++ CL
Sbjct: 226 QRGFMSKENVKKCIEVLSKQCDNIVPIVQKCL 257
>gi|374325948|ref|YP_005084148.1| exosome complex exonuclease Rrp41 [Pyrobaculum sp. 1860]
gi|356641217|gb|AET31896.1| exosome complex exonuclease Rrp41 [Pyrobaculum sp. 1860]
Length = 224
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 111/215 (51%), Gaps = 13/215 (6%)
Query: 47 CRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLNCNVSYTTFA 105
R G V++A GSA +G T + +V+GPRE + + + G + F+
Sbjct: 1 MREVKISVGVVSNADGSAMVSYGTTTAVAAVYGPREMHPRHLSLPDRGVMRVRYHMAPFS 60
Query: 106 T--------PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVV 157
T P R + + S +L +ALE AI+LE +P++ +DVF +L++ GS
Sbjct: 61 TKDERKSPTPSRRE----IEISKVLREALEPAIMLEQYPRSRIDVFVEILQADGSTRVAS 116
Query: 158 ISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQ 217
++ AS+ALADAGI M DLV VSV + +++D E+ Y +G L + MP+ T
Sbjct: 117 LTAASLALADAGIYMRDLVIGVSVGLVDGTVVLDLNGLEDQYGEGDLPVGYMPNLKRFTL 176
Query: 218 LTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
L + G W+ F +A+ L + + + +I R LK
Sbjct: 177 LQLDGAWTREAFLQALNLAVRGAEHVYQIARDALK 211
>gi|424819350|ref|ZP_18244459.1| 3' exoribonuclease [Candidatus Parvarchaeum acidiphilum
ARMAN-4_'5-way FS']
gi|269986356|gb|EEZ92654.1| 3' exoribonuclease [Candidatus Parvarchaeum acidiphilum ARMAN-4]
gi|326422442|gb|EGD71841.1| 3' exoribonuclease [Candidatus Parvarchaeum acidiphilum
ARMAN-4_'5-way FS']
Length = 235
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 119/222 (53%), Gaps = 7/222 (3%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLN 96
R D R F + RP TG + +A GSA + GNT+ I +V+GP E K + + N G +
Sbjct: 5 RFDKRKFDELRPMEAETGIIPNAKGSARFKIGNTEAIAAVYGPEEVKPRHIEKVNKGIIV 64
Query: 97 CNVSYTTFATPVRGQ-GSDHKDF--SSMLHKALEGAIILETFPKTTVDVFALVLESGGSD 153
C F+ P R + G D +D S ++ AL A+ILE P+ V+V + ++
Sbjct: 65 CKYDMLPFSVPDRARPGMDRRDIEISQVITNALNRAVILEEMPRAMVNVRIYITQADAGT 124
Query: 154 LPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDG---SLMIACMP 210
++ AS+A ADAG+ M DLVA+V+ +G ++ +D EEE + +G + IA +P
Sbjct: 125 RCASLTAASMACADAGLPMRDLVAAVAAGKIGDSICLDLTKEEEDFHEGGATDVPIALLP 184
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
S+ E+ L + G+ + + +++ + ++ ++ ++ LK
Sbjct: 185 SKNEIVLLQLDGKVTREELKKVIEMGKKGAMEIYELEKAALK 226
>gi|15897636|ref|NP_342241.1| exosome complex exonuclease Rrp41 [Sulfolobus solfataricus P2]
gi|29337007|sp|Q9UXC2.1|ECX1_SULSO RecName: Full=Probable exosome complex exonuclease 1
gi|71042717|pdb|2BR2|B Chain B, Rnase Ph Core Of The Archaeal Exosome
gi|71042719|pdb|2BR2|D Chain D, Rnase Ph Core Of The Archaeal Exosome
gi|71042721|pdb|2BR2|F Chain F, Rnase Ph Core Of The Archaeal Exosome
gi|71042723|pdb|2BR2|H Chain H, Rnase Ph Core Of The Archaeal Exosome
gi|71042725|pdb|2BR2|J Chain J, Rnase Ph Core Of The Archaeal Exosome
gi|71042727|pdb|2BR2|L Chain L, Rnase Ph Core Of The Archaeal Exosome
gi|71042729|pdb|2BR2|N Chain N, Rnase Ph Core Of The Archaeal Exosome
gi|71042731|pdb|2BR2|P Chain P, Rnase Ph Core Of The Archaeal Exosome
gi|71042733|pdb|2BR2|R Chain R, Rnase Ph Core Of The Archaeal Exosome
gi|71042735|pdb|2BR2|T Chain T, Rnase Ph Core Of The Archaeal Exosome
gi|71042737|pdb|2BR2|V Chain V, Rnase Ph Core Of The Archaeal Exosome
gi|71042739|pdb|2BR2|X Chain X, Rnase Ph Core Of The Archaeal Exosome
gi|83754539|pdb|2C37|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754541|pdb|2C37|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754543|pdb|2C37|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754545|pdb|2C37|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754547|pdb|2C37|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754549|pdb|2C37|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754551|pdb|2C37|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754553|pdb|2C37|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754555|pdb|2C37|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754557|pdb|2C37|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754559|pdb|2C37|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754561|pdb|2C37|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754563|pdb|2C38|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754565|pdb|2C38|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754567|pdb|2C38|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754569|pdb|2C38|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754571|pdb|2C38|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754573|pdb|2C38|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754575|pdb|2C38|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754577|pdb|2C38|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754579|pdb|2C38|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754581|pdb|2C38|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754583|pdb|2C38|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754585|pdb|2C38|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754587|pdb|2C39|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754589|pdb|2C39|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754591|pdb|2C39|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754593|pdb|2C39|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754595|pdb|2C39|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754597|pdb|2C39|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754599|pdb|2C39|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754601|pdb|2C39|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754603|pdb|2C39|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754605|pdb|2C39|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754607|pdb|2C39|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754609|pdb|2C39|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|6015742|emb|CAB57569.1| ribonuclease PH [Sulfolobus solfataricus P2]
gi|13813903|gb|AAK41031.1| Ribonuclease PH (rph) [Sulfolobus solfataricus P2]
Length = 248
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 112/222 (50%), Gaps = 4/222 (1%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
D R D R + R G + +A GSA E GNTK I +V+GP+E + + +
Sbjct: 16 DGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRA 75
Query: 94 RLNCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
L T F+T R + + + S ++ +ALE A+++E FP+T +DVF +L++
Sbjct: 76 VLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQAD 135
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
V + AS+ALADAGI M DL+A V+V +++D E+ + + + IA MP
Sbjct: 136 AGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIAMMP 195
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
S +VT + G + F +A L + + + R LK
Sbjct: 196 SLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALK 237
>gi|284174962|ref|ZP_06388931.1| exosome complex exonuclease Rrp41 [Sulfolobus solfataricus 98/2]
gi|384434251|ref|YP_005643609.1| exosome complex exonuclease 1 [Sulfolobus solfataricus 98/2]
gi|299689089|pdb|3L7Z|B Chain B, Crystal Structure Of The S. Solfataricus Archaeal Exosome
gi|299689092|pdb|3L7Z|E Chain E, Crystal Structure Of The S. Solfataricus Archaeal Exosome
gi|299689095|pdb|3L7Z|H Chain H, Crystal Structure Of The S. Solfataricus Archaeal Exosome
gi|261602405|gb|ACX92008.1| exosome complex exonuclease 1 [Sulfolobus solfataricus 98/2]
Length = 245
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 112/222 (50%), Gaps = 4/222 (1%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
D R D R + R G + +A GSA E GNTK I +V+GP+E + + +
Sbjct: 13 DGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRA 72
Query: 94 RLNCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
L T F+T R + + + S ++ +ALE A+++E FP+T +DVF +L++
Sbjct: 73 VLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQAD 132
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
V + AS+ALADAGI M DL+A V+V +++D E+ + + + IA MP
Sbjct: 133 AGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIAMMP 192
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
S +VT + G + F +A L + + + R LK
Sbjct: 193 SLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALK 234
>gi|390939121|ref|YP_006402859.1| exosome complex exonuclease 1 [Desulfurococcus fermentans DSM
16532]
gi|390192228|gb|AFL67284.1| exosome complex exonuclease 1 [Desulfurococcus fermentans DSM
16532]
Length = 242
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 112/221 (50%), Gaps = 4/221 (1%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIG 93
D LR D R + RP G + +A+GSA E+GNTK + +V+GPRE+ K + +
Sbjct: 10 DGLRIDGRKPEELRPVRIALGVLKNANGSALVEYGNTKALAAVYGPREALPKHISLPDRA 69
Query: 94 RLNCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
L F+T R + + + S ++ +ALE + FP+ ++DVF +L++
Sbjct: 70 ILRVRYHMAPFSTTERKSPAPSRREIELSKVIREALESVVFTSQFPRASIDVFIEILQAD 129
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
G ++ AS+ALADAGI M DLV V+V + L++D E+ Y + L + MP
Sbjct: 130 GGTRTTGLTAASLALADAGIPMRDLVIGVAVGKVDGVLVLDINELEDKYGEADLPVGIMP 189
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
+ E+ L + G + F +A+ + ++ K + +
Sbjct: 190 NTGEIVLLQLNGVLTPGEFKQALDMAYKGVEQIYKTAKEAM 230
>gi|282165297|ref|YP_003357682.1| putative exosome complex exonuclease 1 [Methanocella paludicola
SANAE]
gi|282157611|dbj|BAI62699.1| putative exosome complex exonuclease 1 [Methanocella paludicola
SANAE]
Length = 254
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 116/225 (51%), Gaps = 7/225 (3%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIG 93
+D R D RG ++ RP F+ G + A GS Y EFG KV+ +V+GPRE + N
Sbjct: 9 IDGKRLDGRGPNELRPIKFKAGVLKRADGSCYLEFGGNKVMAAVYGPREVHPRHL-QNAS 67
Query: 94 RLNCNVSYTTFATPVRGQ---GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
R Y A V + G D + + S + +ALE ++ E +P++ VD+F +L+
Sbjct: 68 RAIVRYRYNMAAFSVEERKRPGPDRRSIEISKVSREALESVVLEELYPRSAVDIFVEILQ 127
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ I+ ASVALADAGI M LV++ SV + +++D +E++Y L +A
Sbjct: 128 ADAGTRVAGINAASVALADAGIPMRCLVSACSVGKIDGEVVLDLNKDEDNYGQADLPVA- 186
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
+ EVT + G + F +A+ + +D KL ++ + L E
Sbjct: 187 VNQFGEVTLCQMDGHLTEEEFGKALDMAVDGCKKLHEMQKQALVE 231
>gi|14601412|ref|NP_147949.1| exosome complex exonuclease Rrp41 [Aeropyrum pernix K1]
gi|29337017|sp|Q9YC03.1|ECX1_AERPE RecName: Full=Probable exosome complex exonuclease 1
gi|5105131|dbj|BAA80445.1| exosome complex exonuclease Rrp41 homologue [Aeropyrum pernix K1]
Length = 246
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 117/225 (52%), Gaps = 6/225 (2%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
D R D R RP + G +++A GSA EFG T+V+ +V+GPRE + Y R
Sbjct: 14 DGRRHDGRLPEDLRPVRMQVGILHNADGSALVEFGRTRVLAAVYGPREPHQ-RFYVLPDR 72
Query: 95 LNCNVSY--TTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
V Y F+T R + + + S ++ +ALE ++ E FP+T +DVF VL++
Sbjct: 73 AALRVRYHMAPFSTDERKSPAPSRREIELSKVVREALEPVVLAEEFPRTVIDVFLEVLQA 132
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACM 209
G ++ AS+ALADAGI M LV V+V + L++D E+ Y + + +A
Sbjct: 133 DGGTRTAAVTAASLALADAGIPMRALVGGVAVGKIQGVLVVDVDELEDMYGEADMPVAAA 192
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEA 254
P E+T L + G + F A+ + L A ++ ++ + ++++
Sbjct: 193 PDIGEITLLQLNGVLTGEEFRTALAMALRAIDRVVEMEKEAIRKS 237
>gi|389860735|ref|YP_006362975.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermogladius
cellulolyticus 1633]
gi|388525639|gb|AFK50837.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermogladius
cellulolyticus 1633]
Length = 242
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 115/227 (50%), Gaps = 16/227 (7%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIG 93
D LR D R + RP G + +A+GSA E+G TKV+ +V+GPRE KA+ +
Sbjct: 12 DGLRVDGRKPDELRPIRMEIGVLKNANGSALVEYGGTKVLAAVYGPREVIPKAVQLPDRA 71
Query: 94 RLNCNVSYTTFATPVRGQGSDHK---------DFSSMLHKALEGAIILETFPKTTVDVFA 144
L F+T ++HK + S ++ +ALE + + FP+ ++DVF
Sbjct: 72 VLRVRYHMAPFST------TEHKSPAPTRREIELSKVIREALESVVFADQFPRASIDVFI 125
Query: 145 LVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSL 204
V+++ G ++ AS+ALADAGI M DLVA V+V + L++D E+ Y + L
Sbjct: 126 EVIQADGGTRTAGLTAASLALADAGIPMKDLVAGVAVGKVEGVLVLDINELEDEYGEADL 185
Query: 205 MIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
+ E+ L + G + F +A++L + K+ +M+ L
Sbjct: 186 PVGYAVGIGEIVLLQLNGVLTVEEFKKAIELAKRGAEKVYALMKETL 232
>gi|393216797|gb|EJD02287.1| ribosomal protein S5 domain 2-like protein [Fomitiporia
mediterranea MF3/22]
Length = 262
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 114/218 (52%), Gaps = 6/218 (2%)
Query: 42 RGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSY 101
R RP F +TG ++ A+GSAY E TK+ +V+GPR+SK + Y G+L+ V +
Sbjct: 43 RSASDIRPIFLKTGLISQANGSAYIETEKTKIACAVYGPRQSKTST-YHEKGKLHVEVKF 101
Query: 102 TTFATPVRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVI 158
F+ R + ++ + S ++ ++L AI LE PK+++D+F V+E+ G + V
Sbjct: 102 APFSCAKRRAPMRDAEDRSVSILIQQSLTPAIRLELIPKSSIDIFLFVIENDGIEGCVSA 161
Query: 159 SC--ASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVT 216
AS ALA A I M LV S + + + K + +DP EE G L +AC+P+ VT
Sbjct: 162 GAIAASTALAHARIDMLGLVVSCAAATMPKEIWLDPTTEEARAARGRLTLACVPALGLVT 221
Query: 217 QLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEA 254
+ TG+ S + + C + + ++ L E+
Sbjct: 222 NVWQTGQMSIDEVEKCIDACQEKCRDIHAVVAQALLES 259
>gi|305663898|ref|YP_003860186.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignisphaera aggregans
DSM 17230]
gi|304378467|gb|ADM28306.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignisphaera aggregans
DSM 17230]
Length = 242
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 115/228 (50%), Gaps = 13/228 (5%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNI 92
+D R D R RP G + +A GSA E G T V+ +V+GPRE + +
Sbjct: 10 IDGRRHDGRRPEDLRPIRMEVGVLKNADGSAIVEIGKTVVLAAVYGPREVVPRHEEIVDR 69
Query: 93 GRLNCNVSYTTFAT--------PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFA 144
+ C +F+T P R + + S ++ +ALE AII +P+T +D+F
Sbjct: 70 AVIRCRYRMLSFSTLGERKSPAPSRRE----IELSKVIREALEPAIISSMYPRTAIDIFV 125
Query: 145 LVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSL 204
V+ + G I+ AS+ALADAGI + DLVA+V+V + +++D E+ Y + +
Sbjct: 126 EVINANGGTRTAGITAASLALADAGIPLADLVAAVAVGKIDGVIVLDLDELEDMYGEADM 185
Query: 205 MIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
IA MPS +T L + G + F A++L L ++ ++ + L+
Sbjct: 186 PIAAMPSLNRITMLQLNGVLTKEEFKAALKLGLQGIKQIYELQKETLR 233
>gi|290989317|ref|XP_002677284.1| predicted protein [Naegleria gruberi]
gi|284090891|gb|EFC44540.1| predicted protein [Naegleria gruberi]
Length = 248
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 117/224 (52%), Gaps = 5/224 (2%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
+ LR D R H+ R F+ + A GSAY E GNT+V+ +V+GPRE K K+ M ++
Sbjct: 11 EGLRVDGRRSHEIRNIKFKLNLFSRADGSAYYEQGNTRVLAAVYGPREVKNKSQMKNDRA 70
Query: 94 RLNCNVSYTTFATPVRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+NC S TF+T R + D + + S ++ + E I+ +P+T +D+F VL++
Sbjct: 71 IINCEYSMATFSTGERKRQFKKDRRSTEISVVIRQTFESVILTHLYPRTQIDIFMQVLQA 130
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACM 209
G I+ A++AL DAGI M D V S + + + L D E+ + IA +
Sbjct: 131 DGGTRCACINAATLALLDAGIPMKDFVVSCAAGFIQGSPLTDLNYIEDCAGGPDVPIALL 190
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
P +VT L + + S F + ++ ++ ++ K++ LK+
Sbjct: 191 PKHDKVTLLQMDSKLSLDQFEKVLEHAIEGCKQIHKVIDEQLKK 234
>gi|385773349|ref|YP_005645915.1| exosome complex exonuclease 1 [Sulfolobus islandicus HVE10/4]
gi|323477463|gb|ADX82701.1| exosome complex exonuclease 1 [Sulfolobus islandicus HVE10/4]
Length = 245
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 112/222 (50%), Gaps = 4/222 (1%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
D R D R + R G + +A GSA E GNTK I +V+GP+E + + +
Sbjct: 13 DGKRIDGRKPEELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRA 72
Query: 94 RLNCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
L T F+T R + + + S ++ +ALE A+++E FP+T +DVF +L++
Sbjct: 73 VLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQAD 132
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
V + AS+ALADAGI M DL+A V+V +++D E+ + + + +A MP
Sbjct: 133 AGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIVLDLNEPEDMWGEADMPVAMMP 192
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
S +VT + G + F +A L + + + R LK
Sbjct: 193 SLNQVTLFQLNGNMTPEEFRQAFDLAVKGINIIYNLEREALK 234
>gi|374633082|ref|ZP_09705449.1| archaeal exosome-like complex exonuclease 1 [Metallosphaera
yellowstonensis MK1]
gi|373524566|gb|EHP69443.1| archaeal exosome-like complex exonuclease 1 [Metallosphaera
yellowstonensis MK1]
Length = 245
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 125/244 (51%), Gaps = 9/244 (3%)
Query: 21 TRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGP 80
+K R + G +D RPD + RP G + +A GS+ E GNTK+I +V+GP
Sbjct: 4 VQKPRLILEDGRRLDGRRPD-----ELRPMKIEIGVLKNADGSSLVEVGNTKIIAAVYGP 58
Query: 81 RESK-KAMMYSNIGRLNCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFP 136
RE + + N L T F+T R + + + S ++ +ALE +I++E FP
Sbjct: 59 REMHPRHLALPNRAVLRVRYHMTPFSTDERKSPAPSRREIELSKVIREALESSILVEQFP 118
Query: 137 KTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEE 196
++++D+F V+++ + AS+A+ DAGI + D++A+V+V +++D E
Sbjct: 119 RSSIDIFMEVIQADAGTRLASLMAASLAVVDAGIPVRDIIAAVAVGKADGVIVLDLNEPE 178
Query: 197 ESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAAS 256
+ + + + +A MPS ++T + + G S F +A+ L + + + L+ S
Sbjct: 179 DMWGEADMPVAMMPSLGQITLIQLNGHMSREEFKQALDLAYKGINTIYNLEKDVLRSRLS 238
Query: 257 DEQE 260
+ +E
Sbjct: 239 ELKE 242
>gi|227827677|ref|YP_002829457.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.14.25]
gi|238619848|ref|YP_002914674.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.16.4]
gi|227459473|gb|ACP38159.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.14.25]
gi|238380918|gb|ACR42006.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.16.4]
Length = 245
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 117/234 (50%), Gaps = 11/234 (4%)
Query: 25 RPPIF--SGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE 82
RP + G +D +PD + R G + +A GSA E GNTK I +V+GP+E
Sbjct: 6 RPKLILEDGKRIDGRKPD-----ELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKE 60
Query: 83 SK-KAMMYSNIGRLNCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKT 138
+ + + L T F+T R + + + S ++ +ALE A+++E FP+T
Sbjct: 61 MHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRT 120
Query: 139 TVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEES 198
+DVF +L++ V + AS+ALADAGI M DL+A V+V +++D E+
Sbjct: 121 AIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIVLDLNEPEDM 180
Query: 199 YQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
+ + + +A MPS +VT + G + F +A L + + + R LK
Sbjct: 181 WGEADMPVAMMPSLNQVTLFQLNGNMTPEEFRQAFDLAVKGINIIYNLEREALK 234
>gi|229584881|ref|YP_002843383.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.16.27]
gi|228019931|gb|ACP55338.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.16.27]
Length = 245
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 117/234 (50%), Gaps = 11/234 (4%)
Query: 25 RPPIF--SGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE 82
RP + G +D +PD + R G + +A GSA E GNTK I +V+GP+E
Sbjct: 6 RPKLILEDGKRIDGRKPD-----ELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKE 60
Query: 83 SK-KAMMYSNIGRLNCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKT 138
+ + + L T F+T R + + + S ++ +ALE A+++E FP+T
Sbjct: 61 MHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRT 120
Query: 139 TVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEES 198
+DVF +L++ V + AS+ALADAGI M DL+A V+V +++D E+
Sbjct: 121 AIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIVLDLNEAEDM 180
Query: 199 YQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
+ + + +A MPS +VT + G + F +A L + + + R LK
Sbjct: 181 WGEADMPVAMMPSLNQVTLFQLNGNMTPEEFRQAFDLAVKGINIIYNLEREALK 234
>gi|385775987|ref|YP_005648555.1| exosome complex exonuclease 1 [Sulfolobus islandicus REY15A]
gi|323474735|gb|ADX85341.1| exosome complex exonuclease 1 [Sulfolobus islandicus REY15A]
Length = 245
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 117/234 (50%), Gaps = 11/234 (4%)
Query: 25 RPPIF--SGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE 82
RP + G +D +PD + R G + +A GSA E GNTK I +V+GP+E
Sbjct: 6 RPKLIFEDGKRIDGRKPD-----ELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKE 60
Query: 83 SK-KAMMYSNIGRLNCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKT 138
+ + + L T F+T R + + + S ++ +ALE A+++E FP+T
Sbjct: 61 MHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRT 120
Query: 139 TVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEES 198
+DVF +L++ V + AS+ALADAGI M DL+A V+V +++D E+
Sbjct: 121 AIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIVLDLNEPEDM 180
Query: 199 YQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
+ + + +A MPS +VT + G + F +A L + + + R LK
Sbjct: 181 WGEADMPVAMMPSLNQVTLFQLNGNMTPEEFRQAFDLAVKGINIIYNLEREALK 234
>gi|126031138|pdb|2JE6|B Chain B, Structure Of A 9-Subunit Archaeal Exosome
gi|145579801|pdb|2JEA|B Chain B, Structure Of A 9-Subunit Archaeal Exosome Bound To Rna
gi|145579805|pdb|2JEB|B Chain B, Structure Of A 9-Subunit Archaeal Exosome Bound To Mn Ions
gi|407943802|pdb|4BA1|B Chain B, Archaeal Exosome (rrp4-rrp41(d182a)-rrp42) Bound To
Inorganic Phosphate
gi|407943805|pdb|4BA2|B Chain B, Archaeal Exosome (rrp4-rrp41(d182a)-rrp42) Bound To
Inorganic Phosphate
Length = 250
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 111/222 (50%), Gaps = 4/222 (1%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
D R D R + R G + +A GSA E GNTK I +V+GP+E + + +
Sbjct: 18 DGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRA 77
Query: 94 RLNCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
L T F+T R + + + S ++ +ALE A+++E FP+T +DVF +L++
Sbjct: 78 VLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQAD 137
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
V + AS+ALADAGI M DL+A V+V +++D E + + + IA MP
Sbjct: 138 AGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEAMWGEADMPIAMMP 197
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
S +VT + G + F +A L + + + R LK
Sbjct: 198 SLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALK 239
>gi|84490039|ref|YP_448271.1| exosome complex exonuclease Rrp41 [Methanosphaera stadtmanae DSM
3091]
gi|84373358|gb|ABC57628.1| putative exosome complex, exonuclease 1 subunit [Methanosphaera
stadtmanae DSM 3091]
Length = 232
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 113/221 (51%), Gaps = 4/221 (1%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIG 93
+++R D R ++ R G +N+A GSAY E GN K++V V+GPRE K +
Sbjct: 4 EFIRKDGRAYNTLRNMKMEVGVLNNADGSAYIECGNNKILVGVYGPREIHSKKHSKPDGA 63
Query: 94 RLNCNVSYTTFATPVR---GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
L C + F+ R G + S ++ +A+ I LE +P+ ++D+ VLE+
Sbjct: 64 VLRCKYNMAPFSVKERKRPGPNRRSTEISKLISEAITPNIFLEKYPRASIDISIEVLEAE 123
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
G + I AS+ALADA I M DL+++ +V + ++++D +E+ + +A +P
Sbjct: 124 GGTRCLGIVGASLALADAEIPMKDLISACAVGKVDDHIVLDLSEQEDQTGQADMPLAIIP 183
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
E+T L + G + F EA+ L D + ++ + L
Sbjct: 184 RTGEITFLQMDGNLTQEEFEEALDLAYDGCYYINQLQKEAL 224
>gi|449451735|ref|XP_004143616.1| PREDICTED: exosome complex component RRP41-like [Cucumis sativus]
gi|449516461|ref|XP_004165265.1| PREDICTED: exosome complex component RRP41-like [Cucumis sativus]
Length = 241
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 114/224 (50%), Gaps = 5/224 (2%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIG 93
+ LR D R + R GAV+ A+GSA E GNTKV+ +V+GPRE K+ SN
Sbjct: 7 EGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSNQA 66
Query: 94 RLNCNVSYTTFAT--PVRGQGSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ C + F+T +R D + + S ++ + +E I+ P++ +D+F VL++
Sbjct: 67 LVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIFVQVLQA 126
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACM 209
G I+ A++ALADAGI M D+V S S L N L+D E+S + + +
Sbjct: 127 DGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFL 186
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
P +VT L + + F + M+L ++ + +R+ + E
Sbjct: 187 PKLDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVMLE 230
>gi|227830374|ref|YP_002832154.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus L.S.2.15]
gi|229579192|ref|YP_002837590.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus Y.G.57.14]
gi|229582056|ref|YP_002840455.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus Y.N.15.51]
gi|284997880|ref|YP_003419647.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.D.8.5]
gi|227456822|gb|ACP35509.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.S.2.15]
gi|228009906|gb|ACP45668.1| exosome complex exonuclease 1 [Sulfolobus islandicus Y.G.57.14]
gi|228012772|gb|ACP48533.1| exosome complex exonuclease 1 [Sulfolobus islandicus Y.N.15.51]
gi|284445775|gb|ADB87277.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.D.8.5]
Length = 245
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 117/234 (50%), Gaps = 11/234 (4%)
Query: 25 RPPIF--SGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE 82
RP + G +D +PD + R G + +A GSA E GNTK I +V+GP+E
Sbjct: 6 RPKLILEDGKRIDGRKPD-----ELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKE 60
Query: 83 SK-KAMMYSNIGRLNCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKT 138
+ + + L T F+T R + + + S ++ +ALE A+++E FP+T
Sbjct: 61 MHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRT 120
Query: 139 TVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEES 198
+DVF +L++ V + AS+ALADAGI M DL+A V+V +++D E+
Sbjct: 121 AIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIVLDLNEPEDM 180
Query: 199 YQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
+ + + +A MPS +VT + G + F +A L + + + R LK
Sbjct: 181 WGEADMPVAMMPSLNQVTLFQLNGNMTPEEFRQAFDLSVKGINIIYNLEREALK 234
>gi|40217446|emb|CAE46379.1| ribonuclease PH [uncultured archaeon]
gi|268323829|emb|CBH37417.1| Probable exosome complex exonuclease 2 [uncultured archaeon]
Length = 242
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 115/226 (50%), Gaps = 4/226 (1%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
D R RGF + RP G + A GS Y E G+ K + +V+GPRE + + +
Sbjct: 11 DGKRLSGRGFEELRPIKIDVGVLKRADGSCYFELGDNKALAAVYGPREMHPRHFQNAKMA 70
Query: 94 RLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ + F+ R + G D + + S + KAL+ I+ E +PKT ++V+ VL+S
Sbjct: 71 VVKYRYNMAPFSVDDRKRPGPDRRSQEISMVSRKALDPVILRELYPKTAIEVYVEVLQSD 130
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
I+ ASVALADAGI M DLV+SV++ + +++D +E+++ + + IA +
Sbjct: 131 AGTRTAGINAASVALADAGIPMRDLVSSVAIGKIDGEVVLDLDAKEDNFGEADMPIAMIA 190
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAAS 256
+T L + G F +++ + K+ ++ R+ L E S
Sbjct: 191 RTNTITLLQMDGRLKKEEFERGLKIAMSGCRKIYELQRAALVEKYS 236
>gi|52549528|gb|AAU83377.1| ribonuclease PH [uncultured archaeon GZfos27G5]
Length = 247
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 113/218 (51%), Gaps = 4/218 (1%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLN 96
R D RGF + RP G + A GS Y E GN KVI +V+GPRE + + + +
Sbjct: 13 RSDGRGFDELRPIKIEVGVLKRADGSCYLELGNNKVIAAVYGPREMHPRHAQDAKMAVIK 72
Query: 97 CNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSD 153
+ F+T R + G D + + S + +A + I+ E +PK ++V+ +L+S
Sbjct: 73 FRYNMAPFSTDDRKRPGPDRRSVEISKVCREAFDPVIMRELYPKMGIEVYVELLQSDAGT 132
Query: 154 LPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRY 213
I+ AS+ALADAGI M DLV+S++V + +++D E++ + + IA +
Sbjct: 133 RTAGINAASIALADAGIPMKDLVSSIAVGKINGEVVLDLNAAEDNNGEADMPIAMIARTN 192
Query: 214 EVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
+T L + G + F ++L + A ++ ++ R+ L
Sbjct: 193 TITALQMDGRMTQEEFGRGLKLAMGACHQIYELQRAAL 230
>gi|392595837|gb|EIW85160.1| ribosomal protein S5 domain 2-like protein [Coniophora puteana
RWD-64-598 SS2]
Length = 259
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 110/200 (55%), Gaps = 5/200 (2%)
Query: 42 RGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSY 101
R RP F +TG ++ A+GSAY E TK+ +++GPR++K + YS GRLN V +
Sbjct: 39 RAASDIRPIFLQTGFISQANGSAYVETAKTKLACAIYGPRQNKASAAYSEHGRLNVEVKF 98
Query: 102 TTFATPVRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSD--LPV 156
F+ P R + ++ + + +H+AL ++ LE PK+T+DVF +LES G +
Sbjct: 99 APFSYPRRKAPLRDAEDRTIAETIHQALASSVRLELLPKSTIDVFITILESDGIEGCTAT 158
Query: 157 VISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVT 216
+ AS ALADAGI + LV + S + +G+ + +DP E GS+ +A +P+ VT
Sbjct: 159 ASTAASAALADAGIEILGLVTACSAAIIGEEIWLDPTEAESKQATGSVSLAYLPALDRVT 218
Query: 217 QLTVTGEWSTPHFNEAMQLC 236
+ +G+ M+ C
Sbjct: 219 TVFQSGQMDVSMAIRCMEQC 238
>gi|255513309|gb|EET89575.1| 3' exoribonuclease [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 246
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 126/224 (56%), Gaps = 5/224 (2%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNI 92
VD R D R F++ RP G + +A+GSAY E+GN KV+ +V+GP+E+ + + +N
Sbjct: 12 VDGKRLDGRDFNELRPLKIEAGILANANGSAYLEWGNNKVLAAVYGPKEATPRHLADTNK 71
Query: 93 GRLNCNVSYTTFAT-PVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ C S F++ G+ ++ + S + + E ++LE FP + +++F +L+
Sbjct: 72 AIIKCRYSMAPFSSMGDHGRSGPNRRAIEISKVTKEVFENVVMLEEFPGSEIEIFIEILQ 131
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
S G I+ A+VALA+AGI + D+V +VS + ++++ID + E++Y D + ++
Sbjct: 132 SDGGTRAAGITAAAVALANAGIHVKDMVYAVSAGRIDEHVVIDVNMIEDNYSDADMPVSI 191
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
P V L + G ++ F EAM++ L++ + K+ R LK
Sbjct: 192 SPKDNSVLLLQMDGGFTKEQFGEAMKMILESGKVISKVQRDALK 235
>gi|147919675|ref|YP_686581.1| putative exosome complex exonuclease 1 [Methanocella arvoryzae
MRE50]
gi|110621977|emb|CAJ37255.1| putative exosome complex exonuclease 1 [Methanocella arvoryzae
MRE50]
Length = 253
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 120/226 (53%), Gaps = 9/226 (3%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSN 91
VD R D RG RP F+ G + A GS Y EFG KV+ +V+GPRE + SN
Sbjct: 9 VDGKRLDGRGPFDLRPIKFQAGVLKRADGSCYLEFGGNKVMAAVYGPREVHPRHLQQASN 68
Query: 92 -IGRLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVL 147
I R N++ +F+ R + G D + + S + +ALE I+ E +P++ +D+F +L
Sbjct: 69 AIVRYRYNMA--SFSVEERKRPGPDRRSIEISKVSREALESVILKELYPRSAIDIFVEIL 126
Query: 148 ESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIA 207
++ I+ ASVALADAGI M LV++ +V L++D +E++Y L IA
Sbjct: 127 QADAGTRVAGINAASVALADAGIPMKCLVSACAVGKADDTLVLDLNKDEDNYGQADLPIA 186
Query: 208 CMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
M E+T + G ++ F+ A+ + ++ KL ++ + L E
Sbjct: 187 -MNQFGEITLCQMDGHMTSDEFSTALNMAIEGCKKLHELQKQALVE 231
>gi|288560609|ref|YP_003424095.1| exosome complex exonuclease Rrp41 [Methanobrevibacter ruminantium
M1]
gi|288543319|gb|ADC47203.1| exosome complex exonuclease Rrp41 [Methanobrevibacter ruminantium
M1]
Length = 236
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 118/228 (51%), Gaps = 4/228 (1%)
Query: 29 FSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAM 87
F S+ + LR D R + + RP G + A GSAY E G K++ SV+GPRES + +
Sbjct: 3 FIISENEKLRGDGRAYDELRPIKIEAGVLKRADGSAYLEVGGNKILASVYGPRESYIRRL 62
Query: 88 MYSNIGRLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFA 144
+ N G + + F+ R + G D + + S + AL A++LE+FP++ VDV
Sbjct: 63 LKPNTGVIRVRYNMAPFSVDDRKRPGPDRRSTEISKIAADALRPALMLESFPRSMVDVSI 122
Query: 145 LVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSL 204
V+E+ G I+ A+VALADAGI M D+V + + +++D +E+ +
Sbjct: 123 EVIEAEGGTRCAGITAAAVALADAGIPMKDIVVGCAAGKVNDEIVLDLSEKEDKEGQADV 182
Query: 205 MIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
IA MP E+T L G + F EA+ L ++ K+ +I LK
Sbjct: 183 PIAIMPRTGEITLLQADGNLTEEEFEEALDLAIEGCMKISEIQHEALK 230
>gi|194761146|ref|XP_001962793.1| GF15621 [Drosophila ananassae]
gi|190616490|gb|EDV32014.1| GF15621 [Drosophila ananassae]
Length = 249
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 114/222 (51%), Gaps = 5/222 (2%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R H+ R + G GSAY E GNTKV+ +V+GP ++K SN +N
Sbjct: 13 LRLDGRRPHELRHIQCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKKTESNDVIIN 72
Query: 97 CNVSYTTFATPVRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
C S TF+T R D K +F L +AL AI E +P++ +DV+ VL++ G+
Sbjct: 73 CQYSQATFSTAERKNRPRGDRKSQEFKMYLQQALSAAIKSELYPRSQIDVYVEVLQADGA 132
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDG-SLMIACMPS 211
+ V ++ A++AL DAGI + +L+ + + S N+ + + E G L +A +P+
Sbjct: 133 NYAVALNAATLALIDAGICLNELIVACTASLSKNNIPLTDISHIEEVSGGPKLTVAALPT 192
Query: 212 RYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
++ L ++ + H ++ + ++ I+ + +KE
Sbjct: 193 AQKIAFLEMSERFHIDHLETVIETAMAGCREIRDILEAVVKE 234
>gi|52548823|gb|AAU82672.1| ribonuclease PH [uncultured archaeon GZfos19A5]
Length = 247
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 114/221 (51%), Gaps = 4/221 (1%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
D R D RGF + RP G + A GS Y E G+ KVI +V+GPRE + + +
Sbjct: 10 DGKRLDGRGFDELRPIKIEVGVLKRADGSCYLELGDNKVIAAVYGPREMHPRHAQDAKMA 69
Query: 94 RLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ + F+T R + G D + + S + +A + I+ E +PK ++V+ +L+S
Sbjct: 70 VVKFRYNMAPFSTDDRKRPGPDRRSVEISKVCREAFDPVIMRELYPKMGIEVYVELLQSD 129
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
I+ AS+ALADAGI M DLV+S++V + +++D E++ + + IA +
Sbjct: 130 AGTRTAGINAASIALADAGIPMKDLVSSIAVGKINGEMVLDLNAAEDNNGEADMPIAMIA 189
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
+T L + G + F ++L + A ++ ++ R+ L
Sbjct: 190 RTNTITALQMDGRLTKEEFERGLKLAVGACHQIYELQRTAL 230
>gi|126459546|ref|YP_001055824.1| exosome complex exonuclease Rrp41 [Pyrobaculum calidifontis JCM
11548]
gi|254782536|sp|A3MUP1.1|ECX1_PYRCJ RecName: Full=Probable exosome complex exonuclease 1
gi|126249267|gb|ABO08358.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum
calidifontis JCM 11548]
Length = 246
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 13/225 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRL 95
LR D R Q R + G V++A GSA +G T + +V+GPRE + + + G +
Sbjct: 13 LRADGRAPDQMREVQIQVGTVSNADGSAVVSYGATTAVAAVYGPREMHPRHLSLPDRGVM 72
Query: 96 NCNVSYTTFAT--------PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVL 147
F+T P R + + S +L +ALE A++LE +P++ +DVF +L
Sbjct: 73 RVRYHMAPFSTKDERKSPTPSRRE----IEISKVLREALEPAVMLEQYPRSRIDVFIEIL 128
Query: 148 ESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIA 207
++ GS ++ AS+ALADAGI M DLV VSV + +++D E++Y +G + +
Sbjct: 129 QADGSTRVASLTAASLALADAGIYMRDLVVGVSVGLVDGTVVLDLNGLEDNYGEGDMPVG 188
Query: 208 CMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
MP+ T L + G W+ F EA+ L + + + ++ R LK
Sbjct: 189 YMPNLRRFTLLQLDGAWTREKFLEALGLAVKGAEYVYQVAREALK 233
>gi|284161628|ref|YP_003400251.1| exosome complex exonuclease 1 [Archaeoglobus profundus DSM 5631]
gi|284011625|gb|ADB57578.1| exosome complex exonuclease 1 [Archaeoglobus profundus DSM 5631]
Length = 244
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 120/234 (51%), Gaps = 7/234 (2%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNI 92
V+ R D R F + RP G +N A GS Y E G KV+ +V+GPRE K + +
Sbjct: 8 VNGKRLDGRDFEELRPIKIEAGVLNRADGSCYLEMGGNKVVAAVYGPREVHPKHLEDPSK 67
Query: 93 GRLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ S F+ R + G D + + S + +ALE I+ E FP++ +D+F VL++
Sbjct: 68 AIIRYRYSMAPFSVEERKRPGPDRRSIEISKVSREALEPVIMKELFPRSAIDIFVEVLQA 127
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACM 209
++ ASVAL DAGI M +V SV+V+ + L++DP+ EE++Y + + A +
Sbjct: 128 DAGSRTACLNAASVALIDAGIPMKGMVTSVAVAKVDGILVLDPMKEEDNYGEADIPFAFL 187
Query: 210 PSRYE---VTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDEQE 260
+ +T L + G S +A+++ + ++ ++ R + + E+E
Sbjct: 188 IRNGKIESITLLQMDGRVSKEELKKALEMAKKGAMQIYQLQREAILKKYIKEEE 241
>gi|352682028|ref|YP_004892552.1| exosome complex exonuclease 1 [Thermoproteus tenax Kra 1]
gi|350274827|emb|CCC81473.1| exosome complex exonuclease 1 (RNase PH) [Thermoproteus tenax Kra
1]
Length = 245
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 115/224 (51%), Gaps = 5/224 (2%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNI 92
V+ R D R Q R G +++A GSA +GNT + +V+GPRE + + +
Sbjct: 10 VEGKRADGRAPDQMREVNIAVGVISNADGSAMVSYGNTVAVAAVYGPREMHPRHLSLPDK 69
Query: 93 GRLNCNVSYTTFATPVRGQG----SDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ F+T + + S +L +ALE AI LE FP++ +DVF +L+
Sbjct: 70 AVMRVRYHMAPFSTKDERKNPAPSRREIEISKVLREALEPAIFLEQFPRSRIDVFIEILQ 129
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ GS ++ AS+ALADAGI M DLV VSV + +++D E++Y +G + +
Sbjct: 130 ADGSTRVASLTAASLALADAGIPMRDLVIGVSVGLVNGVVVLDLNGLEDNYGEGDMPVGY 189
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
MP+ ++ L + G W+ F EA++L + + + R LK
Sbjct: 190 MPNLRRISLLQLDGAWTRERFTEALRLAIKGAEYVYSKAREALK 233
>gi|225454436|ref|XP_002280302.1| PREDICTED: exosome complex component RRP41 [Vitis vinifera]
gi|147867252|emb|CAN81194.1| hypothetical protein VITISV_022853 [Vitis vinifera]
gi|297745390|emb|CBI40470.3| unnamed protein product [Vitis vinifera]
Length = 241
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 110/224 (49%), Gaps = 5/224 (2%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIG 93
+ LR D R + R GAV A GSA+ E GNTKVI +V+GPRE ++ S+
Sbjct: 7 EGLRLDGRRPMEMRQIRGEIGAVAKADGSAFFEMGNTKVIAAVYGPREVENRSQQISDQA 66
Query: 94 RLNCNVSYTTFAT--PVRGQGSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ C + F+T +R D + + S ++ + +E I+ P++ +D+F VL++
Sbjct: 67 LVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACM 209
G I+ A++ALADAGI M DLV S S L L+D E+S + + +
Sbjct: 127 DGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
P +VT L + + F MQL ++ + +R L E
Sbjct: 187 PKLDKVTLLQMDAKLPMDIFENVMQLAIEGCKAIANYIREVLLE 230
>gi|408404985|ref|YP_006862968.1| exosome complex exonuclease [Candidatus Nitrososphaera gargensis
Ga9.2]
gi|408365581|gb|AFU59311.1| putative exosome complex exonuclease [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 247
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 119/226 (52%), Gaps = 8/226 (3%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
D + R D RG + R G V +A GSA+ EFG K++ +V+GPRE K M S+
Sbjct: 9 DENGKRTDGRGIDELREVKITVGTVKNADGSAFIEFGKNKILAAVYGPREVHPKHMAQSD 68
Query: 92 IGRLNCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
L C + F+T R + + + S ++ +ALE A++LE +P+ +DVF VL+
Sbjct: 69 RCVLRCRYHMSPFSTDTRKNPAPSRREVEISKVMREALEPALMLEDYPRAAIDVFVEVLQ 128
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
S G I+ A+VALADAGI M DLVA+ + + +++D E+ + +A
Sbjct: 129 SDGGSRCAGITAAAVALADAGINMRDLVAACAAGKVDDKIVLDINDTEDKEGSADMPVAY 188
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEA 254
MP ++T L + G+ + FNE CLD + K++ K+A
Sbjct: 189 MPRLEQITLLQLDGKLTPDQFNE----CLDKAIGGCKMVYEIQKQA 230
>gi|402590947|gb|EJW84877.1| hypothetical protein WUBG_04212 [Wuchereria bancrofti]
Length = 250
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 91/152 (59%), Gaps = 5/152 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRL 95
R D R HQ R ++ G + A GSAY E GNTKV+ +V+GP E K ++ + + +
Sbjct: 9 FRQDGRKPHQIRNLNYKLGVYSQADGSAYLEQGNTKVLCAVYGPYEPKQRSRLLEDRCII 68
Query: 96 NCNVSYTTFATPVRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D + +F+ ++ KA E AI+ E +P++ +DVF +L++ G
Sbjct: 69 NCQYSMATFSTNERKERPRGDRRSLEFARLMEKAFEAAILTENYPRSQIDVFCELLQADG 128
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSC 183
S L ++ ++ALADAG+ M LVA+ S +C
Sbjct: 129 SHLAACVNVGTLALADAGVPMRGLVAAASCAC 160
>gi|342320046|gb|EGU11989.1| mRNA transport regulator 3 [Rhodotorula glutinis ATCC 204091]
Length = 270
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 115/195 (58%), Gaps = 10/195 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R Q RP F + G V A+GSAY E G TKV+ +V+GP+ + + ++ RLN
Sbjct: 35 RRDGRLAAQVRPIFLQPGLVTEAAGSAYIEAGRTKVLCAVYGPKPTPPSAPFNPKARLNV 94
Query: 98 NVSYTTFATPVR----GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG-- 151
+ + FA+ VR G+ ++ +++L ++L +++LET PK+ +D+F VLES G
Sbjct: 95 EIKFAPFASGVRRYVPGKDTEATGLAAVLQQSLLPSLLLETLPKSQIDLFVTVLESDGWD 154
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCL----GKNLLIDPVLEEESYQDGSLMIA 207
+DL + ++ ASVALA+AGI M LV + S + L K+ ++DP +E + +A
Sbjct: 155 NDLSIGVTAASVALAEAGIPMRGLVTACSATLLPTPNSKSAILDPTRDEARESSAFVSLA 214
Query: 208 CMPSRYEVTQLTVTG 222
CMP+ VT L ++G
Sbjct: 215 CMPALGTVTSLRLSG 229
>gi|170586916|ref|XP_001898225.1| Putative exosome complex exonuclease RRP41 [Brugia malayi]
gi|158594620|gb|EDP33204.1| Putative exosome complex exonuclease RRP41, putative [Brugia
malayi]
Length = 249
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 91/152 (59%), Gaps = 5/152 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRL 95
R D R HQ R ++ G + A GSAY E GNTKV+ +V+GP E K ++ + + +
Sbjct: 9 FRQDGRKPHQIRNLNYKLGVYSQADGSAYLEQGNTKVLCAVYGPYEPKQRSRLLEDRCII 68
Query: 96 NCNVSYTTFATPVRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D + +F+ ++ KA E AI+ E +P++ +DVF +L++ G
Sbjct: 69 NCQYSMATFSTNERKERPRGDRRSLEFARLMEKAFEEAILTENYPRSQIDVFCELLQADG 128
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSC 183
S L ++ ++ALADAG+ M LVA+ S +C
Sbjct: 129 SHLAACVNVGTLALADAGVPMRGLVAAASCAC 160
>gi|70606425|ref|YP_255295.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius DSM
639]
gi|449066637|ref|YP_007433719.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius N8]
gi|449068911|ref|YP_007435992.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius
Ron12/I]
gi|76364178|sp|Q4JB27.1|ECX1_SULAC RecName: Full=Probable exosome complex exonuclease 1
gi|68567073|gb|AAY80002.1| ribonuclease PH [Sulfolobus acidocaldarius DSM 639]
gi|449035145|gb|AGE70571.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius N8]
gi|449037419|gb|AGE72844.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius
Ron12/I]
Length = 243
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 114/220 (51%), Gaps = 4/220 (1%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRL 95
LR D R + RP G + +A GSA E GNTKVI +V+GP+E + + + L
Sbjct: 15 LRTDGRKLDELRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDKASL 74
Query: 96 NCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
T F+T R + + + S ++ +ALE I+L FP+T +D+F VL++
Sbjct: 75 RVRYHMTPFSTDERKNPAPSRREIELSKVIREALESTILLNLFPRTVIDIFMEVLQADAG 134
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSR 212
V + AS+ALADAGI M DL+A V+V +L++D +E+ + + + IA +PS
Sbjct: 135 TRLVALMAASMALADAGIPMRDLIAGVAVGKADGSLVLDLNEQEDMWGEADMPIAVLPSL 194
Query: 213 YEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
+V L + G + F A +L + + + + LK
Sbjct: 195 GQVVLLQLNGFMTPDEFRRAFELAQKGISSIYALQKEALK 234
>gi|410671927|ref|YP_006924298.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanolobus
psychrophilus R15]
gi|409171055|gb|AFV24930.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanolobus
psychrophilus R15]
Length = 346
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 118/231 (51%), Gaps = 5/231 (2%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMY--- 89
D + LR D R ++ R + G ++ A GS Y E+GN K++V+V+GPRE +
Sbjct: 10 DENGLRLDGRQINEMRQMKIKIGVLSRADGSCYLEWGNNKILVAVYGPRELHPRRLQKAD 69
Query: 90 SNIGRLNCNVSYTTFATPVR-GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
S + R N++ + +R G + S + +A E I+ +P +DVFA VL+
Sbjct: 70 SALIRYRYNMAAFSVEDRIRPGPSRRSIEISKVSREAFEPVIMTHLYPGAVIDVFAEVLQ 129
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ I+ AS+ALADAGI M LV++ +V + L++D E++Y L +A
Sbjct: 130 ADAGTRTAAINAASIALADAGIPMKSLVSACAVGKVDGQLVLDLNKAEDNYGQADLPVA- 188
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDEQ 259
M E+T L + G + F A+++C + ++ ++ + L+ +D+
Sbjct: 189 MTQDGEITLLQMDGNLTQEEFKRALEMCKEGCRQIMEMQKEALRNKFADDH 239
>gi|324522716|gb|ADY48116.1| Exosome complex exonuclease RRP41 [Ascaris suum]
Length = 249
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 114/226 (50%), Gaps = 10/226 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRL 95
R D R HQ R ++ G A GSAY E GNTKV+ +V+GP E ++ + +
Sbjct: 9 FRLDGRKPHQIRNINYKLGVYTQADGSAYLEQGNTKVLCAVYGPHEPRQRNRTQEDRCTV 68
Query: 96 NCNVSYTTFATPVRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D + +F+ ++ KA E AI++E +P +D+F +L++ G
Sbjct: 69 NCQYSMATFSTNERKERPRGDRRSMEFARLMEKAFETAILVENYPHAQIDIFCELLQADG 128
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSC-LGKNLLIDPVLEEESYQDGSLMIACMP 210
S L ++ A++ALADAG+ M LVA+ S +C L D EES + IA +
Sbjct: 129 SHLAACVNAATLALADAGVPMRGLVAAASCACALDGTPCADVSAREESNVMPRITIANIS 188
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAAS 256
E+ + H +Q A++++ SCL+ A S
Sbjct: 189 GMDEIILTELQNRLHRDHLIPMLQCARMAASQV----HSCLEVAVS 230
>gi|327400938|ref|YP_004341777.1| exosome complex exonuclease 1 [Archaeoglobus veneficus SNP6]
gi|327316446|gb|AEA47062.1| exosome complex exonuclease 1 [Archaeoglobus veneficus SNP6]
Length = 246
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 119/236 (50%), Gaps = 11/236 (4%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS--- 90
VD R D R F + RP G + A GS Y E G K++ +V+GPRE +
Sbjct: 10 VDGKRLDGRDFDELRPIKIEAGVLRRADGSCYIEMGKNKIVAAVYGPREVHPRHLQDPSR 69
Query: 91 NIGRLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVL 147
I R N++ F+ R + G D + + S + +ALE I+ E FP++ +D+F VL
Sbjct: 70 AIIRYRYNMA--PFSVEERKKPGPDRRSIEISKVSREALEPVILKELFPRSGIDIFVEVL 127
Query: 148 ESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIA 207
++ ++ ASVAL DAG+ M ++ +V+V+ + +++DP+ EE++Y + + A
Sbjct: 128 QADAGTRTACLNAASVALIDAGVAMRGMITAVAVAKVEGEIVLDPMKEEDNYGEADVPFA 187
Query: 208 CMPSRYEVTQ---LTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDEQE 260
+ ++ L + G+ S +A++L + ++ I R + S E+E
Sbjct: 188 FLIRNGKIESIALLQMDGKMSAEEMKKALELAKKGAMQIYNIQREAIMRKYSREEE 243
>gi|170290983|ref|YP_001737799.1| exosome complex exonuclease 1 [Candidatus Korarchaeum cryptofilum
OPF8]
gi|170175063|gb|ACB08116.1| exosome complex exonuclease 1 [Candidatus Korarchaeum cryptofilum
OPF8]
Length = 248
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 116/220 (52%), Gaps = 4/220 (1%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRL 95
+R D R H+ RP G + A GSA+ E+G +++ +VFGPRE K M+ + +
Sbjct: 18 IRTDGRLPHEMRPIKMMVGVLEKADGSAFVEWGGNRILAAVFGPREVHPKHMVLPDRALI 77
Query: 96 NCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
+ F+TP R + G D + + S ++ +AL+ AI E +P + +D+F VL S
Sbjct: 78 RARYNMAPFSTPERRRPGPDRRSIELSKVIREALKPAIFAENYPGSVIDIFVEVLRSDAG 137
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSR 212
I+ AS+ALA AG+ M LV++ SV +G +++DP +E+ + D + +A M
Sbjct: 138 TRVAGINAASLALASAGVAMRGLVSACSVGRVGSFIVVDPNHDEDMWGDSDMPLAMMMES 197
Query: 213 YEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
E+T L G S F EA+ L A + ++ + LK
Sbjct: 198 EEITLLQADGTLSEEEFKEALDLGRRAIRFVYEVQKEALK 237
>gi|18313178|ref|NP_559845.1| exosome complex exonuclease Rrp41 [Pyrobaculum aerophilum str. IM2]
gi|29336868|sp|Q8ZVM9.1|ECX1_PYRAE RecName: Full=Probable exosome complex exonuclease 1
gi|18160692|gb|AAL64027.1| 3' exoribonuclease family protein [Pyrobaculum aerophilum str. IM2]
Length = 246
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 116/225 (51%), Gaps = 13/225 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRL 95
+R D R Q R G V++A GSA +G T + +V+GPRE + + + G +
Sbjct: 13 VRADGRTPDQMREVKIAVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVM 72
Query: 96 NCNVSYTTFAT--------PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVL 147
F+T P R + + S +L +ALE AI+LE +P++ +DVF +L
Sbjct: 73 RVRYHMAPFSTKDERKSPTPSRRE----IEISKILREALEPAIVLEQYPRSRIDVFVEIL 128
Query: 148 ESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIA 207
++ GS ++ AS+ALADAGI M DLV VSV + +++D E+ Y +G L +
Sbjct: 129 QADGSTRVASLTAASLALADAGIYMRDLVVGVSVGLVDGTVVLDLNGLEDQYGEGDLPLG 188
Query: 208 CMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
MP+ T L + G W+ F +A+ L + + + +I R LK
Sbjct: 189 YMPNLKRFTLLQLDGAWTRDMFLQALNLAVRGAEYVYQIARDALK 233
>gi|224130470|ref|XP_002320845.1| predicted protein [Populus trichocarpa]
gi|118489833|gb|ABK96716.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222861618|gb|EEE99160.1| predicted protein [Populus trichocarpa]
Length = 241
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 111/224 (49%), Gaps = 5/224 (2%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIG 93
+ LR D R + R + GAV A GSA E GNTKVI +V+GPRE ++ ++
Sbjct: 7 EGLRLDGRRPMEMRQLRAQIGAVAKADGSAVFEMGNTKVIAAVYGPREVQNRSQQINDQA 66
Query: 94 RLNCNVSYTTFATPVRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ C S F+T R + D + + S ++ +A+E I+ P++ +D++ VL++
Sbjct: 67 LVRCEYSMANFSTGDRRRKPKGDRRSTEISLVIRQAMEECILTNLMPRSQIDIYVQVLQA 126
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACM 209
G I+ A++ALADAGI M DLV S S L L+D E+S + + +
Sbjct: 127 DGGTRSACINAATLALADAGIPMRDLVTSCSAGFLNSTPLLDLNYVEDSAGGPDVTVGIL 186
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
P +VT L + + F MQL ++ + +R L E
Sbjct: 187 PKLDKVTLLQMDAKLPIDTFENVMQLAVEGCKAIANYIREVLLE 230
>gi|336380311|gb|EGO21464.1| hypothetical protein SERLADRAFT_473839 [Serpula lacrymans var.
lacrymans S7.9]
Length = 281
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 114/211 (54%), Gaps = 10/211 (4%)
Query: 52 FRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG- 110
+ G +N A+GSAY E TK+ +V+GPR+SK N GRLN V ++ F+ R
Sbjct: 71 LQPGLINQANGSAYIETDKTKIACAVYGPRQSKTTTFSEN-GRLNVEVKFSPFSCARRKA 129
Query: 111 --QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADA 168
+ ++ + + +H+A+ ++ LE PK+T+DVF ++E+ G + IS ++A + A
Sbjct: 130 PLRDAEDRSLAVSIHQAVLSSVRLELLPKSTIDVFITIIENDG--IEGCISSGTIAASAA 187
Query: 169 ----GIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEW 224
GI + LVAS S + LG + +DP +E +G+L++ACMP+ VT + +G
Sbjct: 188 LADAGIEVLGLVASCSAAALGDEIWLDPTEKEARKSEGTLILACMPALGIVTNVWQSGRM 247
Query: 225 STPHFNEAMQLCLDASAKLGKIMRSCLKEAA 255
+ + + LC + + ++ L E +
Sbjct: 248 TVEKATQCLDLCQERCTDIHAVVAQSLLETS 278
>gi|395836960|ref|XP_003791414.1| PREDICTED: exosome complex component MTR3 [Otolemur garnettii]
Length = 272
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 127/248 (51%), Gaps = 20/248 (8%)
Query: 23 KTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE 82
+++PP +D D P +R + RP + R G ++ A GSAY E G TKV+ +V GPR+
Sbjct: 13 ESQPPQLYAADEDEA-PTARDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQ 71
Query: 83 SKKAMMYSNI------------GRLNCNVSYTTFATPVRGQ---GSDHKDFSSMLHKALE 127
++ GRL C+ FA R G + ++ + L +ALE
Sbjct: 72 AEGGERGGGPAGAGGEAPAALRGRLLCDFRRAPFAGRRRRAPPGGCEERELALALQEALE 131
Query: 128 GAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCL--- 184
A+ L +P+ ++V AL+LE GGS L ++ A++ALADAGI MYDLV +S
Sbjct: 132 PAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGIEMYDLVVGCGLSRAPGP 191
Query: 185 GKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWS-TPHFNEAMQLCLDASAKL 243
L+DP EE SL +A MP +V L +GE T + EA++L L+ +L
Sbjct: 192 APTWLLDPTRLEEERAAASLTVALMPVLNQVAGLLGSGEGGPTESWAEAVRLGLEGCQRL 251
Query: 244 GKIMRSCL 251
+++ CL
Sbjct: 252 YPVLQQCL 259
>gi|221101900|ref|XP_002160475.1| PREDICTED: exosome complex component RRP41-like [Hydra
magnipapillata]
Length = 244
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 107/213 (50%), Gaps = 9/213 (4%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIG 93
+ LR D R H+ R + G + A GSAY E GNTKVI SV+GP E S ++ +
Sbjct: 10 EGLRFDGRKCHELRKITAKKGIFSQADGSAYIEQGNTKVIASVYGPHEVSNRSKTLHDST 69
Query: 94 RLNCNVSYTTFATPVRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+NC S TF+ R D K + S +L K AI+ E +P++ +D++ V++S
Sbjct: 70 LINCQFSMATFSMSERKNRPKGDRKSTEISMLLEKTFATAIMTELYPRSQIDIYVQVIQS 129
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACM 209
G + I+ A++AL DAG+ M D V + + S + + L D EES L +A +
Sbjct: 130 DGGVIAACINVATLALIDAGVPMKDFVCACTSSYVQEKNLTDINHLEESSGSCQLTLAML 189
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQL----CLD 238
P +V V+ + E +++ CLD
Sbjct: 190 PRTAKVVAFQVSSRLHLDNLEELLKITKQGCLD 222
>gi|167519907|ref|XP_001744293.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777379|gb|EDQ90996.1| predicted protein [Monosiga brevicollis MX1]
Length = 214
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 113/223 (50%), Gaps = 30/223 (13%)
Query: 41 SRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVS 100
SR + R +TG V+ A+GS + E G TKV+V+ +GP E+ +A +S++G L C+++
Sbjct: 14 SREAGEPRSLALQTGVVSRAAGSCFLEMGRTKVMVACYGPEEAARAGTFSDMGVLECHIT 73
Query: 101 YTTFATPVRG--QGSD-----HKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSD 153
FA R Q +D +D +M+ AI+LE +PK+T+ + A +LE G
Sbjct: 74 RAPFAEQKRATLQETDADRGLRRDLDAMIKP----AILLEKYPKSTIALQATILEDDGGV 129
Query: 154 LPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRY 213
LP ++ +S AL +AGI + D+V +++ D +++A MPS
Sbjct: 130 LPALVMASSTALVEAGIELRDIVTAIA-------------------GDARMVLALMPSVG 170
Query: 214 EVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAAS 256
EV L G+ A L+A+A G +RS L E AS
Sbjct: 171 EVCGLLHDGKMQLKAQTAATHTLLEAAANYGSALRSTLLEHAS 213
>gi|73669984|ref|YP_305999.1| exosome complex exonuclease 1 [Methanosarcina barkeri str. Fusaro]
gi|72397146|gb|AAZ71419.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanosarcina barkeri
str. Fusaro]
Length = 501
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 112/222 (50%), Gaps = 5/222 (2%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
D LR D R + RP G ++ A GS Y E+G KV+V VFGPRE+ + ++
Sbjct: 12 DGLRLDGRHADEIRPMKIEIGVLSRADGSCYLEWGRNKVLVGVFGPREAHPRRSQRADTA 71
Query: 94 RLNCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ + +F+T R + + + S + +A E I+ E FPKT +D+F +L++
Sbjct: 72 VIRYKYNMASFSTEDRARPGPSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVEILQAD 131
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
I+ +S+ALADAGI M LV S + + +++D EE++Y + +A M
Sbjct: 132 AGTRTAAINASSIALADAGIPMKGLVTSCAFGKVDGQIVLDLNKEEDNYGEADFPVA-MT 190
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
E+T L + G +T + +L ++ +I ++ L+
Sbjct: 191 QDGEITLLQMDGNLTTDEIRKGFELVKKGCKEILEIQQAVLR 232
>gi|353241256|emb|CCA73082.1| hypothetical protein PIIN_07036 [Piriformospora indica DSM 11827]
Length = 267
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 125/240 (52%), Gaps = 12/240 (5%)
Query: 26 PPIFSGSD------VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFG 79
PPIF + D R D R RP F TG V+ A+GSAY E GNTK+ +V+
Sbjct: 19 PPIFIDDERLEPLNSDNKRRDGRASEDLRPIFLTTGLVSQANGSAYIETGNTKIACAVYA 78
Query: 80 PRESKKAMMYSNIGRLNCNVSYTTFATPVRG---QGSDHKDFSSMLHKALEGAIILETFP 136
PR+ K YS+IGRLN V + F++ R + + + ++H++L AI L FP
Sbjct: 79 PRQLKNT-QYSDIGRLNVEVKFAPFSSVRRRAHLRDVEDRTIGQLVHQSLLPAIQLHLFP 137
Query: 137 KTTVDVFALVLESGGSD--LPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVL 194
K+++DVF V+E+ G + + AS ALADAGI M +V + + + +DPV
Sbjct: 138 KSSIDVFITVIENDGLEGCVASASIAASTALADAGIEMDGMVVACCAALYKDRIWMDPVT 197
Query: 195 EEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEA 254
E G+L++A +P+ +T + +G +T + +++C + ++ +K++
Sbjct: 198 SERLAARGALLLAGIPALGTITNIWQSGNVTTKEALQCIEVCYAQFKDIHDVVVEAIKQS 257
>gi|386002838|ref|YP_005921137.1| Exosome complex exonuclease 1 [Methanosaeta harundinacea 6Ac]
gi|357210894|gb|AET65514.1| Exosome complex exonuclease 1 [Methanosaeta harundinacea 6Ac]
Length = 251
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 111/222 (50%), Gaps = 7/222 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
D LR D R + RP G + A GS Y E G+ KVI +V+GPRE + + R
Sbjct: 10 DGLRLDGRRPDELRPIKIEVGVLERADGSCYIEMGDNKVIAAVYGPREVHPRHL-QEVTR 68
Query: 95 LNCNVSYT--TFATPVRGQ-GSDHKDF--SSMLHKALEGAIILETFPKTTVDVFALVLES 149
Y +F+ R + G D + + S + +AL I+ FP++ VD+F VL++
Sbjct: 69 AIVRYRYNMASFSVEERKRPGPDRRSYEVSKVSREALASVILTSYFPRSVVDIFVEVLQA 128
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACM 209
I+ ASVALADAGI M L++S + + +++DP+ E+++ + + IA
Sbjct: 129 DAGTRTAGINAASVALADAGIPMKGLISSCAAGKVDGEIVLDPMKAEDNFGEADVPIAMT 188
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
P E+T L + G S F A++L ++ ++ R L
Sbjct: 189 PG-GEITLLQMDGRLSRDEFRRALELAKVGCQQIYEVQRRVL 229
>gi|193700001|ref|XP_001942946.1| PREDICTED: exosome complex exonuclease MTR3-like [Acyrthosiphon
pisum]
Length = 279
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 112/225 (49%), Gaps = 12/225 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+R D R R +TG V A GSAY E G+TK+I SVF P+E + Y+ G L
Sbjct: 40 VRCDGRDISAHRNLCIKTGIVTQAKGSAYLECGSTKLICSVFDPKEVPNKVEYAKTGELQ 99
Query: 97 CNVSYTTFATPVR---GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSD 153
C + TF+ R + S+ + + L +ALE AI F + + LVLE+ GS
Sbjct: 100 CEFKFATFSCRQRRTYTRDSEERQLCNELRRALEPAICRGEFANFEIHINVLVLENDGSV 159
Query: 154 LPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESY---------QDGSL 204
L I+ A +AL D I MYD++ + S+ +L+DP +EE+ G++
Sbjct: 160 LAAAITAAGLALMDGCIPMYDVIVATSLGIYKNKILVDPTYDEETLCSSTIDNGENRGTV 219
Query: 205 MIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRS 249
M+A M + ++T+ G F E +Q+ + + KL K++ S
Sbjct: 220 MLAYMKNLQQITEFAQNGSMDVNMFPEYVQILTNHNCKLYKLVIS 264
>gi|297821020|ref|XP_002878393.1| hypothetical protein ARALYDRAFT_486650 [Arabidopsis lyrata subsp.
lyrata]
gi|297324231|gb|EFH54652.1| hypothetical protein ARALYDRAFT_486650 [Arabidopsis lyrata subsp.
lyrata]
Length = 241
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 109/224 (48%), Gaps = 5/224 (2%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSNI 92
+ LR D R F++ R G V+ A GSA E GNTKVI +V+GPRE +K ++
Sbjct: 7 EGLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDH 66
Query: 93 GRLNCNVSYTTFAT-PVRGQGSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ C S F+T R Q D + + S ++ + +E I+ E P + +D+F VL++
Sbjct: 67 AVVLCEYSMAQFSTGDRRRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQVLQA 126
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACM 209
G I+ A++ALADAGI M DL S S L L+D E+S + + +
Sbjct: 127 DGGTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLLDLNYVEDSAGGADVTVGIL 186
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
P +VT L + + F L + + + +R L+E
Sbjct: 187 PKLDKVTLLQMDAKLPMETFETVFALASEGCKAIAERIREVLQE 230
>gi|312065760|ref|XP_003135946.1| EXOSome component family member [Loa loa]
gi|307768890|gb|EFO28124.1| EXOSome component family member [Loa loa]
Length = 247
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 5/151 (3%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLN 96
R D R +Q R ++ G + A GSAY E GNTKV+ +V+GP E K ++ + + +N
Sbjct: 10 RQDGRKPYQIRNLNYKLGVYSQADGSAYLEQGNTKVLCAVYGPYEPKQRSRLLEDRCIIN 69
Query: 97 CNVSYTTFATPVRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
C S TF+T R + D + +F+ ++ KA E A++ E +P++ +DVF +L++ GS
Sbjct: 70 CQYSMATFSTNERKERPRGDRRSLEFARLMEKAFEAAVLTENYPRSQIDVFCELLQADGS 129
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSC 183
L ++ ++ALADAG+ M LVA+ S +C
Sbjct: 130 HLAACVNVGTLALADAGVPMRGLVAAASCAC 160
>gi|298709840|emb|CBJ26180.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 244
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 117/224 (52%), Gaps = 5/224 (2%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRL 95
LRPD R + R R G A GSAY E G TK+I V GPRE +++ + G +
Sbjct: 13 LRPDGRRGREIRRVRSRFGVFKGADGSAYLEMGQTKIIAIVKGPREVTRRQDRKYDTGIV 72
Query: 96 NCNVSYTTFATPVRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC + F+ R + ++ K + + + + EGAI+L +P+T +D++ V++S G
Sbjct: 73 NCEYNVAPFSGSERKKRRPTERKGMEIALAVKEVFEGAIMLHLYPRTQIDIYLHVIQSDG 132
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS 211
LPV I+ AS+AL DAG+ M DLV + S L ++D E++ L +A +P
Sbjct: 133 GVLPVGINAASLALVDAGVAMSDLVVACSAGYLDGMPVMDLNYVEQALGGPYLPVAVLPE 192
Query: 212 RYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAA 255
+ ++ + F E ++ DA ++ +++R+ +KE A
Sbjct: 193 KDKLLLAKMESRLPLEIFEEVLRAATDACQQVHEVLRAAVKEHA 236
>gi|146302862|ref|YP_001190178.1| exosome complex exonuclease Rrp41 [Metallosphaera sedula DSM 5348]
gi|145701112|gb|ABP94254.1| ribosomal RNA-processing protein RRP41/SKI6 [Metallosphaera sedula
DSM 5348]
Length = 245
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 120/234 (51%), Gaps = 9/234 (3%)
Query: 31 GSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMY 89
G +D RPD + RP G + +A GS+ E GNTK+I +V+GPRE + +
Sbjct: 14 GRRLDGRRPD-----ELRPMKMEIGVLKNADGSSLVEVGNTKIIAAVYGPREMHPRHLAL 68
Query: 90 SNIGRLNCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALV 146
N L T F+T R + + S ++ +ALE +I++E FP++++DVF V
Sbjct: 69 PNRATLRVRYHMTPFSTDERKSPVPSRREIELSKVIREALESSILVEQFPRSSIDVFMEV 128
Query: 147 LESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMI 206
+++ + AS+A+ DAGI + D++A+V+V +++D E+ + + + +
Sbjct: 129 IQADAGTRLASLMAASLAVVDAGIPVKDVIAAVAVGKADGVVVLDLNEPEDMWGEADMPV 188
Query: 207 ACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDEQE 260
A +PS ++T + + G + F + ++L + + + + L+ ++ E
Sbjct: 189 AMLPSLGQITLIQLNGNMTQQEFKQGLELAYKGISTIYNLEKEVLRNKFAEIHE 242
>gi|348501208|ref|XP_003438162.1| PREDICTED: exosome complex component RRP41-like [Oreochromis
niloticus]
Length = 245
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 111/228 (48%), Gaps = 10/228 (4%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + ++ + +
Sbjct: 13 RLDGRKATELRKLQARMGVFTQADGSAYLEQGNTKALAVVYGPHEMRGSRSRTLHDRAVI 72
Query: 96 NCNVSYTTFATPVRGQ--GSDHKDFSSMLH--KALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K LH + E A++ + +P++ +D++ +L+S G
Sbjct: 73 NCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFEAAVMTQLYPRSQIDIYVKILQSDG 132
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS 211
+ V ++ A++A+ DAGI M D V + +V + + L D EES SL +A +P
Sbjct: 133 GNYSVCVNAATLAVIDAGIPMRDYVCACTVGFVDETPLADLCYAEESGGVSSLALALLPR 192
Query: 212 RYEVTQLTVTGEWSTPHF----NEAMQLCLDASAKLGKIMRSCLKEAA 255
++ L + H AM C S L +++R L+EA+
Sbjct: 193 GGQIALLQMDARLHQDHLETLIEAAMTACKGVSKVLDEVVRQHLQEAS 240
>gi|320101499|ref|YP_004177091.1| ribosomal RNA-processing protein RRP41/SKI6 [Desulfurococcus
mucosus DSM 2162]
gi|319753851|gb|ADV65609.1| ribosomal RNA-processing protein RRP41/SKI6 [Desulfurococcus
mucosus DSM 2162]
Length = 243
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 114/221 (51%), Gaps = 4/221 (1%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIG 93
D LR D R + RP G + +A+GSA E+GNTK + +V+GPRE+ K + +
Sbjct: 11 DGLRVDGRRPDELRPVRIAIGVLKNANGSALVEYGNTKALAAVYGPREAMPKHISLPDRA 70
Query: 94 RLNCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
L F+T R + + + S ++ +ALE + +P+ ++DVF +L++
Sbjct: 71 VLRVRYHMAPFSTSERKSPAPSRREIELSKVIREALESVVFTTQYPRASIDVFIEILQAD 130
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
G ++ AS+ALADAGI M DLV V+V +G L++D E+ Y + L + P
Sbjct: 131 GGTRTAGLTAASLALADAGIPMKDLVIGVAVGKVGGVLVLDINELEDEYGEADLPVGIAP 190
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
+ E+ L + G + F +AM++ ++ K+ + +
Sbjct: 191 NTNEIVLLQLNGVLTPEEFKQAMEMAFKGVEQIYKVAKEAM 231
>gi|125984746|ref|XP_001356137.1| GA13761 [Drosophila pseudoobscura pseudoobscura]
gi|195161898|ref|XP_002021795.1| GL26697 [Drosophila persimilis]
gi|54644456|gb|EAL33197.1| GA13761 [Drosophila pseudoobscura pseudoobscura]
gi|194103595|gb|EDW25638.1| GL26697 [Drosophila persimilis]
Length = 249
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 114/222 (51%), Gaps = 5/222 (2%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R H+ R + G GSAY E GNTKV+ +V+GP ++K +N +N
Sbjct: 13 LRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGMKTETNDVIIN 72
Query: 97 CNVSYTTFATPVRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
C S TFAT R D K +F L +AL AI E +P++ +D++ VL++ G+
Sbjct: 73 CQYSQATFATAERKNRPRGDRKSLEFKMYLEQALSAAIKSELYPRSQIDIYVEVLQADGA 132
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLM-IACMPS 211
+ V ++ A++AL DAGI + + + + + S ++ + + E G ++ +A +P+
Sbjct: 133 NYAVALNAATLALIDAGICLNEFIVACTASLSKSSIPLTDISHTEEVSGGPMLTVAALPN 192
Query: 212 RYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
++ L ++ + H ++ + ++ I+ + ++E
Sbjct: 193 AQKIAFLEMSERFHIDHLETVIETAMAGCREIRDILEAAVRE 234
>gi|427781741|gb|JAA56322.1| Putative exosome component 4 [Rhipicephalus pulchellus]
Length = 246
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 110/222 (49%), Gaps = 6/222 (2%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL-- 95
R D R + R R G A GSAY E GN KV+ +V+GP E + + S R+
Sbjct: 13 RLDGRKPFEQRKIACRLGVFTQADGSAYIEQGNAKVLAAVYGPHEPRGSRSRSFHDRVLV 72
Query: 96 NCNVSYTTFATPVRGQG--SDHKDFSSMLH--KALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K LH +A E +I+ + +P++ +D+F VL+S G
Sbjct: 73 NCQFSMATFSTLERKRRPRGDKKSQEMTLHIQQAFEASILTQLYPRSQIDIFVEVLQSDG 132
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS 211
L V I+ A++AL DAGI + D V + SV + L+D EES + L +A +P
Sbjct: 133 GTLSVCINAATLALIDAGIALKDYVCACSVGFVDGVPLVDISHLEESLRGPELTVAVLPK 192
Query: 212 RYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
++ L +T + + + + + I+ S +KE
Sbjct: 193 SQQMVLLEMTSRVHVDNLQKMLDAAVKGCIDVHAILDSQVKE 234
>gi|432917028|ref|XP_004079428.1| PREDICTED: exosome complex component RRP41-like [Oryzias latipes]
Length = 244
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 112/229 (48%), Gaps = 10/229 (4%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR--L 95
R D R + R R G A GSAY E GNTK + V+GP E + A + R +
Sbjct: 13 RLDGRKATELRKVQARMGVFAQADGSAYLEQGNTKALAVVYGPHEIRGARSRALHDRAII 72
Query: 96 NCNVSYTTFATPVRGQ--GSDHKDFSSMLH--KALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K LH + E A++ + +P++ +D++ +L+S G
Sbjct: 73 NCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFEAAVLTQLYPRSQIDIYVKILQSDG 132
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS 211
+ V ++ A++A+ DAGI M D V + +V + + L D EES SL +A +P
Sbjct: 133 GNYSVCVNAATLAVIDAGIPMRDYVCACTVGFVDETSLADLCYAEESGGVSSLALALLPR 192
Query: 212 RYEVTQLTVTGEWSTPHFN----EAMQLCLDASAKLGKIMRSCLKEAAS 256
++ + + H + AM C S L +++R L+E ++
Sbjct: 193 GGQIALVQMDARLHQDHLDTLIEAAMTACKGVSKVLDQVVRQHLQEGST 241
>gi|330835838|ref|YP_004410566.1| exosome complex exonuclease Rrp41 [Metallosphaera cuprina Ar-4]
gi|329567977|gb|AEB96082.1| exosome complex exonuclease Rrp41 [Metallosphaera cuprina Ar-4]
Length = 245
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 118/234 (50%), Gaps = 9/234 (3%)
Query: 31 GSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMY 89
G +D RPD + RP G + +A GS+ E GNTK+I +V+GPRE + +
Sbjct: 14 GRRLDGRRPD-----ELRPMKMEIGVLKNADGSSLVEVGNTKIIAAVYGPREMHPRHLAL 68
Query: 90 SNIGRLNCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALV 146
N L T F+T R + + S ++ +ALE ++++E FP++++DVF V
Sbjct: 69 PNRATLRVRYHMTPFSTDERKSPVPSRREIELSKVIREALESSVLVEQFPRSSIDVFMEV 128
Query: 147 LESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMI 206
+++ + AS+A+ DAGI + D +A+V+V +++D E+ + + + +
Sbjct: 129 IQADAGTRLASLMAASLAIIDAGIPVRDAIAAVAVGKADGVVVLDLNEPEDMWGEADMPV 188
Query: 207 ACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDEQE 260
A MPS ++T + + G + F + + L + + + LK ++ +E
Sbjct: 189 AMMPSLGQITLIQLNGHMTPEEFKQGLDLAYKGINTIYSMEKEVLKSKFAEMRE 242
>gi|255579328|ref|XP_002530509.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
gi|223529966|gb|EEF31893.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
Length = 241
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 110/224 (49%), Gaps = 5/224 (2%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIG 93
+ LR D R + R + GAV+ A GSA E GNTKVI +V+GPRE ++ +
Sbjct: 7 EGLRLDGRRPMEMRQLRAQIGAVSKADGSAVFEMGNTKVIAAVYGPREVQNRSQQIIDQA 66
Query: 94 RLNCNVSYTTFAT--PVRGQGSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ C + F+T +R D + + S ++ + +E I+ P++ +D++ VL++
Sbjct: 67 LVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIYVQVLQA 126
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACM 209
G I+ A++ALADAGI M DLV S S L L+D E+S + + +
Sbjct: 127 DGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
P +VT L + + F MQL ++ + +R L E
Sbjct: 187 PKLDKVTLLQMDAKLPIDTFENVMQLAVEGCKAIANYIREILLE 230
>gi|15233167|ref|NP_191721.1| exosome complex component RRP41 [Arabidopsis thaliana]
gi|186511299|ref|NP_001118878.1| exosome complex component RRP41 [Arabidopsis thaliana]
gi|6164938|gb|AAF04590.1|AF191741_1 exonuclease RRP41 [Arabidopsis thaliana]
gi|6850853|emb|CAB71092.1| exonuclease RRP41 [Arabidopsis thaliana]
gi|26452705|dbj|BAC43435.1| putative exonuclease RRP41 [Arabidopsis thaliana]
gi|28973161|gb|AAO63905.1| putative exonuclease RRP41 [Arabidopsis thaliana]
gi|332646711|gb|AEE80232.1| exosome complex component RRP41 [Arabidopsis thaliana]
gi|332646712|gb|AEE80233.1| exosome complex component RRP41 [Arabidopsis thaliana]
Length = 241
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 109/224 (48%), Gaps = 5/224 (2%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSNI 92
+ LR D R F++ R G V+ A GSA E GNTKVI +V+GPRE +K ++
Sbjct: 7 EGLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDH 66
Query: 93 GRLNCNVSYTTFAT-PVRGQGSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ C S F+T R Q D + + S ++ + +E I+ E P + +D+F VL++
Sbjct: 67 AVVLCEYSMAQFSTGDRRRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQVLQA 126
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACM 209
G I+ A++ALADAGI M DL S S L L+D E+S + + +
Sbjct: 127 DGGTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLLDLNYVEDSAGGADVTVGIL 186
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
P +V+ L + + F L + + + +R L+E
Sbjct: 187 PKLDKVSLLQMDAKLPMETFETVFALASEGCKAIAERIREVLQE 230
>gi|357512489|ref|XP_003626533.1| Exosome complex exonuclease RRP41 [Medicago truncatula]
gi|355501548|gb|AES82751.1| Exosome complex exonuclease RRP41 [Medicago truncatula]
Length = 241
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 108/224 (48%), Gaps = 5/224 (2%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIG 93
+ LR D R + R GAV+ A GSA E GNTKVI +V+GPRE ++ S+
Sbjct: 7 EGLRSDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRSQQMSDKA 66
Query: 94 RLNCNVSYTTFAT--PVRGQGSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ C S F+T +R D + + S ++ + +E I+ P++ +D++ VL++
Sbjct: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIYVQVLQA 126
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACM 209
G I+ A++ALADAGI M DLV S S L L+D E+S + + +
Sbjct: 127 DGGTRSACINAATLALADAGIPMLDLVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
P +VT L + + MQL + + +R L E
Sbjct: 187 PKLDKVTLLQMDSKLPIDILENVMQLATEGCKAIANYIREILLE 230
>gi|195435372|ref|XP_002065667.1| GK15569 [Drosophila willistoni]
gi|194161752|gb|EDW76653.1| GK15569 [Drosophila willistoni]
Length = 251
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 114/224 (50%), Gaps = 7/224 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGR 94
LR D R H+ R + G GSAY E GNTKV+ +V+GP ++K SN
Sbjct: 13 LRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKNKSSESNDVI 72
Query: 95 LNCNVSYTTFATPVRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+NC S TF+T R D K +F L +AL AI E +P++ +DV+ VL++
Sbjct: 73 INCQYSQATFSTAERKNRPRGDRKSQEFKMYLQQALSAAIKSELYPRSQIDVYVEVLQAD 132
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDG-SLMIACM 209
G++ V ++ A++AL DAGI + + + + + S N+ + + + E G L +A +
Sbjct: 133 GANYAVALNAATLALIDAGICLNEFIVACTASLSKSNIPLTDISQVEEISGGPKLTVAAL 192
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
P+ ++ L ++ + H ++ + ++ I+ + +KE
Sbjct: 193 PTSEKIAFLEMSERFHIDHLETVIETAMAGCREIRDILEAAVKE 236
>gi|346466185|gb|AEO32937.1| hypothetical protein [Amblyomma maculatum]
Length = 284
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 105/211 (49%), Gaps = 10/211 (4%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL-- 95
R D R + R R G A GSAY E GN KV+ +V+GP E + + S R+
Sbjct: 51 RLDGRKPSEQRKIACRLGVFGQADGSAYIEQGNAKVLAAVYGPHEPRGSRSRSFHDRVIV 110
Query: 96 NCNVSYTTFATPVRGQG--SDHKDFSSMLH--KALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K LH +A E +I+ + +P++ +D+F L+S G
Sbjct: 111 NCQFSMATFSTLERKRRPRGDKKSQEMTLHIQQAFEASILTQLYPRSQIDIFVETLQSDG 170
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS 211
L V I+ A++AL DAGI + D V + SV + L+D EES + L +A +P
Sbjct: 171 GTLSVCINAATLALIDAGIALKDYVCACSVGFVEGVPLVDISNLEESMRGPELTVAVLPK 230
Query: 212 RYEVTQLTVTGEWSTPHFNEAMQLCLDASAK 242
E+ L +T H +Q LDA K
Sbjct: 231 SQEMVLLEMTSRVHLDH----LQKMLDAGVK 257
>gi|388583110|gb|EIM23413.1| ribosomal protein S5 domain 2-like protein [Wallemia sebi CBS
633.66]
Length = 254
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 112/219 (51%), Gaps = 11/219 (5%)
Query: 41 SRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVS 100
+R + RP F + G ++SASGS Y E GNTK+ +V+GP++ K A YS+ G+LN +
Sbjct: 33 TRKNDELRPVFIKPGLISSASGSTYIECGNTKIACAVYGPKQIKNA-PYSSTGKLNVEIK 91
Query: 101 YTTFAT-----PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSD-- 153
+ F++ PV+ + H SS + +AL ++ LE + K +D+F +++ D
Sbjct: 92 HAPFSSSIRRDPVKELEATH--LSSQVTQALLPSLRLENYEKMQIDLFVTIIQDDSLDFG 149
Query: 154 -LPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSR 212
L + + A ALA +G+ M LV +V+ +L+DP E Y + + +P+
Sbjct: 150 LLANITTAAGTALASSGLEMNGLVVGATVAFKEDEMLLDPSPSEVKYAKAVMTVCTLPAL 209
Query: 213 YEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
++ + G + +A+Q+ AS + ++ L
Sbjct: 210 TQIAHIWQAGTLDINQYKQALQITESASRNIHTLIAKTL 248
>gi|356562860|ref|XP_003549686.1| PREDICTED: exosome complex component RRP41-like [Glycine max]
Length = 241
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 108/224 (48%), Gaps = 5/224 (2%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIG 93
+ LR D R + R GAV+ A GSA E GNTKVI +V+GPRE + S+
Sbjct: 7 EGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRNQQISSHA 66
Query: 94 RLNCNVSYTTFAT--PVRGQGSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ C S F+T +R D + + S ++ + +E I+ P++ +D++ VL++
Sbjct: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLLPRSQIDIYVQVLQA 126
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACM 209
G I+ A++ALADAGI M DLV S S L L+D E+S + + +
Sbjct: 127 DGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTLGIL 186
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
P +VT L + + MQL ++ + +R L E
Sbjct: 187 PKLDKVTLLQMDSKLPIDILENVMQLAIEGCKAIANYIREVLLE 230
>gi|195116638|ref|XP_002002859.1| GI10716 [Drosophila mojavensis]
gi|193913434|gb|EDW12301.1| GI10716 [Drosophila mojavensis]
Length = 249
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 111/222 (50%), Gaps = 5/222 (2%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R H+ R + G GSAY E GNTKV+ +V+GP ++K N +N
Sbjct: 13 LRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKKTEGNDLVIN 72
Query: 97 CNVSYTTFATPVRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
C S TF+T R D K +F L +AL AI E +P++ +D++ VL++ G+
Sbjct: 73 CQYSQATFSTSERKNRPRGDRKSQEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQADGA 132
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDG-SLMIACMPS 211
+ V ++ A++AL DAGI + + V + + S N+ + + E G L IA +P+
Sbjct: 133 NYAVSLNAATLALIDAGICLNEFVVACTASLSNANIPLTDISHIEEVSGGPKLTIAALPT 192
Query: 212 RYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
++ + ++ + ++ + ++ I+ S +KE
Sbjct: 193 AEKIAFMEMSERFHIDQLETVIETAMAGCREIRDILESAVKE 234
>gi|405971078|gb|EKC35934.1| Exosome complex exonuclease RRP41 [Crassostrea gigas]
Length = 245
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 114/230 (49%), Gaps = 10/230 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGR 94
R D R H+ R + G + A GSAY E GNTKV+ +V+GP E + ++ + +
Sbjct: 12 FRIDGRRSHELRKIQCKLGVFSQADGSAYVEQGNTKVLAAVYGPHEIRGSRSKLLQDKVL 71
Query: 95 LNCNVSYTTFATPVRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+NC S TF+T R + D K + + L + AI+ P++ +D+F VL+S
Sbjct: 72 VNCQYSMATFSTSERKRRPRGDRKSQEMTMHLQQTFNAAILTSLHPRSQIDIFVEVLQSD 131
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
G + ++ A++A+ DAGI M D V + S S LG + ++D EES + +A +P
Sbjct: 132 GGNYCASVNAATLAVIDAGIPMKDYVCACSASYLGDSPIVDINYLEESSGSPEITVAVLP 191
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQL----CLDASAKLGKIMRSCLKEAAS 256
++ L + G + ++ + + C D L + +R + + S
Sbjct: 192 KSEQIVFLEMNGRLHEDNLSKVVDMAVKGCKDVYGVLDRTVREHVSQVGS 241
>gi|195472532|ref|XP_002088554.1| GE11809 [Drosophila yakuba]
gi|194174655|gb|EDW88266.1| GE11809 [Drosophila yakuba]
Length = 246
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 112/222 (50%), Gaps = 8/222 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R H+ R + G GSAY E GNTKV+ +V+GP ++K S I N
Sbjct: 13 LRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKQTESII---N 69
Query: 97 CNVSYTTFATPVRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
C S TF+T R D K +F L +AL AI E +P++ +D++ VL++ G+
Sbjct: 70 CQYSQATFSTAERKNRPRGDRKSLEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQADGA 129
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDG-SLMIACMPS 211
+ V ++ A++AL DAGI + + + + + S N+ + + E G L +A +P+
Sbjct: 130 NYAVALNAATLALIDAGICLNEFIVACTASLSKSNIPLTDISHFEEVSGGPKLTVAALPT 189
Query: 212 RYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
++ L ++ + H ++ + ++ I+ + +KE
Sbjct: 190 AEKIAFLEMSERFHIDHLETVIETAMAGCREIRDILEAAVKE 231
>gi|195398184|ref|XP_002057704.1| GJ18275 [Drosophila virilis]
gi|194141358|gb|EDW57777.1| GJ18275 [Drosophila virilis]
Length = 249
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 111/222 (50%), Gaps = 5/222 (2%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R H+ R + G GSAY E GNTKV+ +V+GP ++K N +N
Sbjct: 13 LRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKKTEGNDLIIN 72
Query: 97 CNVSYTTFATPVRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
C S TF+T R D K +F L +AL AI E +P++ +D++ VL++ G+
Sbjct: 73 CQYSQATFSTSERKNRPRGDRKSQEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQADGA 132
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDG-SLMIACMPS 211
+ V ++ A++AL DAGI + + V + + S N+ + + E G L IA +P+
Sbjct: 133 NYAVSLNAATLALIDAGICLNEFVVACTASLSKSNIPLTDISHIEEVSGGPKLTIAALPT 192
Query: 212 RYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
++ + ++ + ++ + ++ I+ S +KE
Sbjct: 193 AEKIAFMEMSERFHIDQLETVIETAMAGCREIRDILESAVKE 234
>gi|195351217|ref|XP_002042132.1| GM25757 [Drosophila sechellia]
gi|194123956|gb|EDW45999.1| GM25757 [Drosophila sechellia]
Length = 246
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 112/222 (50%), Gaps = 8/222 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R H+ R + G GSAY E GNTKV+ +V+GP ++K S I N
Sbjct: 13 LRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGNQTESVI---N 69
Query: 97 CNVSYTTFATPVRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
C S TF+T R D K +F L +AL AI E +P++ +D++ VL+ G+
Sbjct: 70 CQYSQATFSTAERKNRPRGDRKSLEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQDDGA 129
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDG-SLMIACMPS 211
+ V ++ A++AL DAGI + + + + + S N+ + + + E G L +A +P+
Sbjct: 130 NYAVALNAATLALIDAGICLNEFIVACTASLSKSNIPLTDISQFEEVSGGPKLTVAALPT 189
Query: 212 RYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
++ L ++ + H ++ + ++ I+ + +KE
Sbjct: 190 AEKIAFLEMSERFHIDHLETVIETAMAGCREIRDILEAAVKE 231
>gi|392334379|ref|XP_003753157.1| PREDICTED: exosome complex component MTR3 [Rattus norvegicus]
gi|392355042|ref|XP_003751927.1| PREDICTED: exosome complex component MTR3 [Rattus norvegicus]
Length = 272
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 129/248 (52%), Gaps = 20/248 (8%)
Query: 23 KTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE 82
+++PP ++ D P +R + RP + R G ++ A GSAY E G TKV+ +V GPR+
Sbjct: 13 ESQPPQLYAAEEDET-PAARDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQ 71
Query: 83 SKKAMMYSNI------------GRLNCNVSYTTFATPVRG--QGS-DHKDFSSMLHKALE 127
++ GRL C+ F+ R QGS + ++ L +ALE
Sbjct: 72 AEGGERGGGPAGAGGEAPAALRGRLLCDFRRAPFSGRRRRAPQGSSEDRELGLALQEALE 131
Query: 128 GAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCL--- 184
A+ L +P+ ++V AL+LE GGS L ++ A++ALADAG+ MYDLV +S
Sbjct: 132 PAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSLTPGP 191
Query: 185 GKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGE-WSTPHFNEAMQLCLDASAKL 243
L+DP EE + + L +A MP +V L +GE T + +A++L L+ +L
Sbjct: 192 SPTWLLDPTRLEEEHSEAGLTVALMPVLNQVAGLLGSGEGGQTESWTDAVRLGLEGCQRL 251
Query: 244 GKIMRSCL 251
+++ CL
Sbjct: 252 YPVLQQCL 259
>gi|57087309|ref|XP_546833.1| PREDICTED: exosome complex component MTR3 [Canis lupus familiaris]
Length = 272
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 116/225 (51%), Gaps = 19/225 (8%)
Query: 46 QCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI------------G 93
+ RP + R G ++ A GSAY E G TKV+ +V GPR+++ + G
Sbjct: 35 RLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGSERGGGPAGAGGEAPAALRG 94
Query: 94 RLNCNVSYTTFATPVRGQ---GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
RL C+ FA R G + ++ + L +ALE A+ L +P+ ++V AL+LE G
Sbjct: 95 RLLCDFRRAPFAGRRRRAPPGGGEERELALALQEALEPAVRLGRYPRAQLEVSALLLEDG 154
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCL---GKNLLIDPVLEEESYQDGSLMIA 207
GS L ++ A++ALADAG+ MYDLV +S L+DP EE L +A
Sbjct: 155 GSALAAALTAAALALADAGVEMYDLVVGCGLSRTPEPAPTWLLDPTRLEEERAAAGLTVA 214
Query: 208 CMPSRYEVTQLTVTGEWSTPH-FNEAMQLCLDASAKLGKIMRSCL 251
MP +V L +GE P + EA++L L+ +L +++ CL
Sbjct: 215 LMPVLNQVAGLLGSGEGGPPESWAEAVRLGLEGCQRLYPVLQQCL 259
>gi|30794378|ref|NP_082550.1| exosome complex component MTR3 [Mus musculus]
gi|81875189|sp|Q8BTW3.1|EXOS6_MOUSE RecName: Full=Exosome complex component MTR3; AltName: Full=Exosome
component 6; AltName: Full=mRNA transport regulator 3
homolog
gi|26353554|dbj|BAC40407.1| unnamed protein product [Mus musculus]
gi|109734233|gb|AAI16986.1| Exosome component 6 [Mus musculus]
gi|111599953|gb|AAI19083.1| Exosome component 6 [Mus musculus]
Length = 273
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 127/249 (51%), Gaps = 21/249 (8%)
Query: 23 KTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE 82
+++PP ++ D P +R + RP + R G ++ A GSAY E G TKV+ +V GPR+
Sbjct: 13 ESQPPQLYAAEDDET-PAARDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQ 71
Query: 83 SKKAMMYSNI------------GRLNCNVSYTTFATPVR----GQGSDHKDFSSMLHKAL 126
++ S GRL C+ F+ R G G + ++ L +AL
Sbjct: 72 AEGGERGSGPAGAGGEAPAALRGRLLCDFRRAPFSGRRRRAPQGGGGEDRELGLALQEAL 131
Query: 127 EGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCL-- 184
E A+ L +P+ ++V AL+LE GG L ++ A++ALADAG+ MYDLV +S
Sbjct: 132 EPAVRLGRYPRAQLEVSALLLEDGGCALAAALTAAALALADAGVEMYDLVVGCGLSLTPG 191
Query: 185 -GKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWS-TPHFNEAMQLCLDASAK 242
L+DP EE + L +A MP +V L +GE T + +A++L L+ +
Sbjct: 192 PSPTWLLDPTRLEEEHSAAGLTVALMPVLNQVAGLLGSGEGGQTESWTDAVRLGLEGCQR 251
Query: 243 LGKIMRSCL 251
L +++ CL
Sbjct: 252 LYPVLQQCL 260
>gi|24584046|ref|NP_609618.2| Ski6, isoform A [Drosophila melanogaster]
gi|442627738|ref|NP_001260437.1| Ski6, isoform B [Drosophila melanogaster]
gi|7298022|gb|AAF53263.1| Ski6, isoform A [Drosophila melanogaster]
gi|201065945|gb|ACH92382.1| FI07225p [Drosophila melanogaster]
gi|440213772|gb|AGB92972.1| Ski6, isoform B [Drosophila melanogaster]
Length = 246
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 112/222 (50%), Gaps = 8/222 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R H+ R + G GSAY E GNTKV+ +V+GP ++K S I N
Sbjct: 13 LRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGNQTESVI---N 69
Query: 97 CNVSYTTFATPVRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
C S TF+T R D K +F L +AL AI E +P++ +D++ VL+ G+
Sbjct: 70 CQYSQATFSTAERKNRPRGDRKSLEFKLYLQQALSAAIKSELYPRSQIDIYVEVLQDDGA 129
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDG-SLMIACMPS 211
+ V ++ A++AL DAGI + + + + + S N+ + + + E G L +A +P+
Sbjct: 130 NYAVALNAATLALIDAGICLNEFIVACTASLSKSNIPLTDISQFEEVSGGPKLTVAALPT 189
Query: 212 RYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
++ L ++ + H ++ + ++ I+ + +KE
Sbjct: 190 AEKIAFLEMSERFHIDHLETVIETAMAGCREIRDILEAAVKE 231
>gi|17946442|gb|AAL49254.1| RE67757p [Drosophila melanogaster]
Length = 246
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 112/222 (50%), Gaps = 8/222 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R H+ R + G GSAY E GNTKV+ +V+GP ++K S I N
Sbjct: 13 LRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGNQTESVI---N 69
Query: 97 CNVSYTTFATPVRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
C S TF+T R D K +F L +AL AI E +P++ +D++ VL+ G+
Sbjct: 70 CQYSQATFSTAERKNRPRGDRKSLEFKLYLQQALSAAIKSELYPRSQIDIYVEVLQDDGA 129
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDG-SLMIACMPS 211
+ V ++ A++AL DAGI + + + + + S N+ + + + E G L +A +P+
Sbjct: 130 NYAVALNAATLALIDAGICLNEFIVACTASLSKSNIPLTDISQFEEVSGGPKLTVAALPT 189
Query: 212 RYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
++ L ++ + H ++ + ++ I+ + +KE
Sbjct: 190 AEKIAFLEMSERFHIDHLGTVIETAMAGCREIRDILEAAVKE 231
>gi|21228725|ref|NP_634647.1| exosome complex exonuclease 1 [Methanosarcina mazei Go1]
gi|29336795|sp|Q8PTT8.1|ECX1_METMA RecName: Full=Probable exosome complex exonuclease 1
gi|20907234|gb|AAM32319.1| Ribonuclease [Methanosarcina mazei Go1]
Length = 493
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 111/223 (49%), Gaps = 5/223 (2%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES---KKAMMYSN 91
D LR D R + RP G ++ A GS Y E+G K++V VFGPRE+ + S
Sbjct: 14 DGLRLDGRRADEIRPMKIEVGVLSRADGSCYLEWGRNKILVGVFGPREAHPRRSQRADSA 73
Query: 92 IGRLNCNVSYTTFATPVR-GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ R N++ + R G + S + +A E I+ E FPKT +D+F VL++
Sbjct: 74 VIRYRYNMASFSVEDRARPGPSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVEVLQAD 133
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
I+ +S+ALADAGI M L+ S + + +++D EE++Y + +A M
Sbjct: 134 AGTRTAAINASSIALADAGIPMKGLITSCAFGKVDGKIVLDLNKEEDNYGEADFPVA-MT 192
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
E+T + + G + + ++L ++ +I ++ L++
Sbjct: 193 QDGEITLIQMDGNLTPDEIKQGLELVKKGCKEILEIQQAVLRK 235
>gi|340344304|ref|ZP_08667436.1| Putative exosome complex exonuclease 1 [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519445|gb|EGP93168.1| Putative exosome complex exonuclease 1 [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 244
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 122/230 (53%), Gaps = 8/230 (3%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSN 91
D + +R D R + R + G + +A GSAY EFG+ K++V VFGPR+ K M ++
Sbjct: 12 DENGIRCDGRKVDEPRRIMIKAGGLKNADGSAYIEFGDNKILVGVFGPRDVHPKHMSNTD 71
Query: 92 IGRLNCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
G L F+ R + + + S ++ +ALE A++LE FP+T VDVF VL+
Sbjct: 72 TGILRVRYHMEPFSVTERKNPAPSRREIEISKVIKEALEPAVMLEKFPRTAVDVFIEVLQ 131
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ G +S ASVALADAGI M D+VA+ + +++D EE+ + I
Sbjct: 132 ADGGTRCAALSAASVALADAGIPMRDMVAACAAGKAADTIILDVNNEEDQAGQADMPIGY 191
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDE 258
MPS ++T L + G TP E + C++ K KI+ ++A +D+
Sbjct: 192 MPSLEKITLLQLDGVL-TP---EEYKKCVETGIKGCKIVYELQRKALTDK 237
>gi|341881249|gb|EGT37184.1| hypothetical protein CAEBREN_28802 [Caenorhabditis brenneri]
gi|341892052|gb|EGT47987.1| hypothetical protein CAEBREN_23050 [Caenorhabditis brenneri]
Length = 240
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 110/227 (48%), Gaps = 8/227 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
R D R Q R R G +A GS+Y E GNTKV+ +V+GP E K + + +
Sbjct: 9 FRLDGRRPAQIRNVNTRLGLNRNAEGSSYLEHGNTKVLCAVYGPYEGKASKRLEDRCAIV 68
Query: 97 CNVSYTTFATPVRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
C S TTF+ R D K + S +L KA E I+ E+FP++ +D+F V++ GS
Sbjct: 69 CQYSTTTFSGLERKNRPRGDRKSTEMSRLLEKAFESVILTESFPRSQIDIFCEVIQGDGS 128
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSR 212
+L ++ S+ALADAGI M + ++ + + N ++D EE+ + +A + R
Sbjct: 129 NLAACVNATSLALADAGIPMKGIASAATCGIVEGNPIVDLTSREETDLLPRVTLATICGR 188
Query: 213 YEVTQLTVTGEWSTPHFNEAMQ----LCLDASAKLGKIMRSCLKEAA 255
EV + + H + M+ C D L + + LK A
Sbjct: 189 DEVVLVELHNRLHIDHLSVVMEAAKATCADVYECLAVVAQQHLKACA 235
>gi|194860851|ref|XP_001969665.1| GG10219 [Drosophila erecta]
gi|190661532|gb|EDV58724.1| GG10219 [Drosophila erecta]
Length = 246
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 112/222 (50%), Gaps = 8/222 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R H+ R + G GSAY E GNTKV+ +V+GP ++K S I N
Sbjct: 13 LRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKSKHTESII---N 69
Query: 97 CNVSYTTFATPVRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
C S TF+T R D K +F L +AL AI E +P++ +D++ VL++ G+
Sbjct: 70 CQYSQATFSTAERKYRPRGDRKSLEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQADGA 129
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDG-SLMIACMPS 211
+ V ++ A++AL DAGI + + + + + S N+ + + E G L +A +P+
Sbjct: 130 NYAVALNAATLALIDAGICLNEFIVACTASLSKSNIPLTDISHFEEVSGGPKLTVAALPT 189
Query: 212 RYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
++ L ++ + H ++ + ++ I+ + +KE
Sbjct: 190 AEKIAFLEMSERFHIDHLETVIETAMAGCREIRDILEAAVKE 231
>gi|410923699|ref|XP_003975319.1| PREDICTED: exosome complex component RRP41-like [Takifugu rubripes]
Length = 245
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 112/228 (49%), Gaps = 10/228 (4%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR--L 95
R D R + R R G A GSAY E GNTKV+ V+GP E + + + R +
Sbjct: 13 RIDGRKATELRKIQARMGVFAQADGSAYLEQGNTKVLAVVYGPHEMRGSRSRARHDRAVI 72
Query: 96 NCNVSYTTFATPVRGQ--GSDHKDFSSMLH--KALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K LH + E A++ + FP++ +D++ +L+S G
Sbjct: 73 NCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFEAAVMTQLFPRSQIDIYVKILQSDG 132
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS 211
+ V ++ A++A+ DAGI M D V + +V + + L D EE SL +A +P
Sbjct: 133 GNYSVCVNAATLAVIDAGIPMRDYVCACTVGFVDETPLADLCYAEEGGGVSSLGLALLPR 192
Query: 212 RYEVTQLTVTGEWSTPHFN----EAMQLCLDASAKLGKIMRSCLKEAA 255
++ + + + + AM C S L +++R L+EA+
Sbjct: 193 SSQIALVQMDARLHQDNLDALMEAAMTACKGVSKVLDEVVRQHLQEAS 240
>gi|295322007|pdb|3M7N|D Chain D, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
gi|295322008|pdb|3M7N|E Chain E, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
gi|295322009|pdb|3M7N|F Chain F, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
gi|295322019|pdb|3M85|D Chain D, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
gi|295322020|pdb|3M85|E Chain E, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
gi|295322021|pdb|3M85|F Chain F, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
Length = 258
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 112/227 (49%), Gaps = 11/227 (4%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMY---S 90
VD LR D R F + RP + A GS Y E G KVI +VFGPRE +
Sbjct: 13 VDGLRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPEHLQDPSK 72
Query: 91 NIGRLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVL 147
I R N++ F+ R + G D + + S + +A E I+ E FP++ +D+F VL
Sbjct: 73 AIIRYRYNMA--PFSVEERKRPGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVL 130
Query: 148 ESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIA 207
++ ++ ASVAL DAG+ M ++ SV+V L++DP+ EE+++ + + A
Sbjct: 131 QADAGSRTACLNAASVALVDAGVPMKGMITSVAVGKADGQLVLDPMKEEDNFGEADMPFA 190
Query: 208 CMPSRYEVTQ---LTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
+ ++ L + G + +A++L + ++ ++ R +
Sbjct: 191 FLIRNGKIESIALLQMDGRMTRDEVKQAIELAKKGALQIYEMQREAI 237
>gi|11498104|ref|NP_069329.1| exosome complex exonuclease Rrp41 [Archaeoglobus fulgidus DSM 4304]
gi|29336576|sp|O29757.1|ECX1_ARCFU RecName: Full=Probable exosome complex exonuclease 1
gi|83754325|pdb|2BA0|F Chain F, Archaeal Exosome Core
gi|83754326|pdb|2BA0|E Chain E, Archaeal Exosome Core
gi|83754327|pdb|2BA0|D Chain D, Archaeal Exosome Core
gi|83754334|pdb|2BA1|D Chain D, Archaeal Exosome Core
gi|83754335|pdb|2BA1|E Chain E, Archaeal Exosome Core
gi|83754336|pdb|2BA1|F Chain F, Archaeal Exosome Core
gi|2650133|gb|AAB90744.1| ribonuclease PH (rph) [Archaeoglobus fulgidus DSM 4304]
Length = 258
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 112/227 (49%), Gaps = 11/227 (4%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMY---S 90
VD LR D R F + RP + A GS Y E G KVI +VFGPRE +
Sbjct: 13 VDGLRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPRHLQDPSK 72
Query: 91 NIGRLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVL 147
I R N++ F+ R + G D + + S + +A E I+ E FP++ +D+F VL
Sbjct: 73 AIIRYRYNMA--PFSVEERKRPGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVL 130
Query: 148 ESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIA 207
++ ++ ASVAL DAG+ M ++ SV+V L++DP+ EE+++ + + A
Sbjct: 131 QADAGSRTACLNAASVALVDAGVPMKGMITSVAVGKADGQLVLDPMKEEDNFGEADMPFA 190
Query: 208 CMPSRYEVTQ---LTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
+ ++ L + G + +A++L + ++ ++ R +
Sbjct: 191 FLIRNGKIESIALLQMDGRMTRDEVKQAIELAKKGALQIYEMQREAI 237
>gi|254168384|ref|ZP_04875229.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
gi|197622665|gb|EDY35235.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
Length = 208
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 107/197 (54%), Gaps = 4/197 (2%)
Query: 60 ASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIGRLNCNVSYTTFATPVRGQ-GSDHK- 116
A GSA+ E+G K+I +V+GP E+ K + ++ + S F+ R + G D +
Sbjct: 1 ADGSAFIEWGGNKIIAAVYGPHEAYPKHVQEADRAIVRARYSMAPFSVDERKRPGPDRRA 60
Query: 117 -DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDL 175
+ S ++ +ALE I +E +P+T++DV+ VL++ I+ AS+ALADAGI M DL
Sbjct: 61 IELSKVISEALESVIFVEKYPRTSIDVYIEVLQADAGTRVAGITVASLALADAGIPMRDL 120
Query: 176 VASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQL 235
+ + + +++D EE+++ + +A MP E+ L + G+ S AM +
Sbjct: 121 IVGCAAGKIDDVVVLDLNKEEDNFGQADVPMAIMPRTKEIALLQMDGDMSYEELTTAMDM 180
Query: 236 CLDASAKLGKIMRSCLK 252
+DA+ K+ ++ LK
Sbjct: 181 AMDAAEKIHEMQVEALK 197
>gi|225719528|gb|ACO15610.1| Exosome complex exonuclease MTR3 [Caligus clemensi]
Length = 274
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 98/190 (51%), Gaps = 16/190 (8%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI-GRLNCNVSYTTFAT 106
RP F G + GSAY E G TKVI SVFGPRE K + +S+ G L+ T F++
Sbjct: 52 RPLFCEVGVLTQCKGSAYIERGRTKVIASVFGPREVNKKLDFSSTTGILSVEYCETPFSS 111
Query: 107 PVRGQG-----SDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCA 161
+ ++ K+ S L + + L +PK+ +D+F VLE+ GS +P I+
Sbjct: 112 SSSNRSSKSPSNEDKNISLFLAQTFRSTVCLHLYPKSRIDIFITVLENDGSAIPTAITAG 171
Query: 162 SVALADAGIMMYDLVASVSVS-CLGKNLLIDPVLEEESYQD--------GSLMIACMPSR 212
++AL+DA I ++DLV SV LGK LIDP EE D G+++I PS
Sbjct: 172 ALALSDASINLFDLVIGASVKMSLGK-ALIDPCKAEEEVGDMEDAEDNRGNIIIGYQPSL 230
Query: 213 YEVTQLTVTG 222
++ L G
Sbjct: 231 EQIAALLQDG 240
>gi|320167933|gb|EFW44832.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
Length = 229
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 113/214 (52%), Gaps = 17/214 (7%)
Query: 54 TGAVNSASGSAYAEFGNTKVIVSVFGPRESKKA---MMYSNIGRLNCNVSYTTFATPVRG 110
TG V+ A+GSAY E T+V+ +V+GPRE+ +A ++ L C+V+ FA+P
Sbjct: 3 TGTVSHANGSAYLELAGTRVMAAVYGPRENTRAGGLQQFNEQAVLQCDVARAPFASPRDD 62
Query: 111 Q--GSD--------HKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISC 160
G+D + F++ + AL+ ++ LE + K+++D+F ++ G L I+C
Sbjct: 63 ARIGTDANTSAAAADRQFATSVATALQSSVRLEKYAKSSIDLFVTIIGDDGGALAAAINC 122
Query: 161 ASVALADAGIMMYDLVASVSVSCLGKN---LLIDPVLEEESYQDGSLMIACMPSRYEVTQ 217
++ALADAGI M D+V + SV+ L N +L DP EES A S VT
Sbjct: 123 CTLALADAGIEMNDMVTAASVA-LAANTNIVLWDPTHLEESRASAIATQALRVSDNLVTL 181
Query: 218 LTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
L +GE S +A++ C S +L +M+ L
Sbjct: 182 LDQSGESSLKLSVKALEACSSMSVQLHGLMQQTL 215
>gi|409046107|gb|EKM55587.1| hypothetical protein PHACADRAFT_161608 [Phanerochaete carnosa
HHB-10118-sp]
Length = 263
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 118/229 (51%), Gaps = 24/229 (10%)
Query: 26 PPIF-------------SGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTK 72
PP+F +G +RP S G A + G +N A+GSAY E K
Sbjct: 19 PPVFADEETPVKLGVPRNGRTAKDIRPISNGR-----AVLKPGLINQANGSAYIETEKAK 73
Query: 73 VIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG---QGSDHKDFSSMLHKALEGA 129
+ +V+GPR+S+ + YS GRLN V +T F+ R + ++ + + +H+AL +
Sbjct: 74 IACAVYGPRQSR-STTYSEKGRLNVEVKFTPFSCQRRRAPMRDAEDRSVAVQIHQALLSS 132
Query: 130 IILETFPKTTVDVFALVLESGGSD--LPVVISCASVALADAGIMMYDLVASVSVSCLGKN 187
+ LE PK+T+D+F +V+E+ G + + AS ALADAGI M LV S S + K
Sbjct: 133 VRLELLPKSTIDIFIIVIENDGIEGCVASGSVAASAALADAGIDMLGLVVSCSACIISKE 192
Query: 188 LLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLC 236
+ +DP EE G+L+ A MP+ VT + TG+ + + M+ C
Sbjct: 193 IWLDPTEEEAKQATGTLVYASMPALDTVTNIWQTGKMTVQGAFQCMEAC 241
>gi|195031196|ref|XP_001988306.1| GH10637 [Drosophila grimshawi]
gi|193904306|gb|EDW03173.1| GH10637 [Drosophila grimshawi]
Length = 249
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 111/222 (50%), Gaps = 5/222 (2%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R H+ R + G GSAY E GNTKV+ +V+GP ++K N +N
Sbjct: 13 LRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKAKKSEGNDLIIN 72
Query: 97 CNVSYTTFATPVRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
C S TF+T R D K +F L +AL AI E +P++ +D++ VL++ G+
Sbjct: 73 CQYSQATFSTAERKNRPRGDRKSQEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQADGA 132
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDG-SLMIACMPS 211
+ V ++ A++AL DAGI + + V + + S N+ + + E G L IA +P+
Sbjct: 133 NYAVSLNAATLALIDAGICLNEFVVACTASLSKSNIPLTDISHIEEVSGGPKLTIAALPT 192
Query: 212 RYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
++ + ++ + ++ + ++ I+ + +KE
Sbjct: 193 AEKIAFMEMSERFHIDQLETVIETAMAGCREIRDILEAAVKE 234
>gi|328712784|ref|XP_001945013.2| PREDICTED: exosome complex exonuclease RRP41-like [Acyrthosiphon
pisum]
Length = 249
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 114/227 (50%), Gaps = 10/227 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSNIGR 94
LR D R + R + G N GSAY E GNTKV+ +++GP E + +A ++
Sbjct: 9 LRTDGRRSGELRRIRCKMGVFNQPDGSAYLEQGNTKVVAAIYGPHEIRTNRAKAPNDSAV 68
Query: 95 LNCNVSYTTFATPVRGQG-SDHKDFSSMLH--KALEGAIILETFPKTTVDVFALVLESGG 151
+NC S TF+ R + D+K LH +A+ AI + +PK+ +D+F VL+S G
Sbjct: 69 INCQYSMATFSRSERKRRPRDNKSAELTLHLKQAMATAIKTDLYPKSQIDIFVQVLQSDG 128
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCL-GKNLLIDPVLEEESYQDGSLMIACMP 210
+ V ++ A++AL DAGI M + V S + S G+ L+D EE+ SL +A +P
Sbjct: 129 GNYSVCVNAATLALIDAGIAMEEFVISCTSSLANGETPLVDISHLEETMGGPSLTVAILP 188
Query: 211 SRYEVTQLTVTGEWSTPHFN----EAMQLCLDASAKLGKIMRSCLKE 253
++ L + H EA++ C L KI++ +E
Sbjct: 189 ISGKIAMLETSQRIHINHLEPVLTEAVRGCRYIYENLNKIIKKHYEE 235
>gi|356573193|ref|XP_003554748.1| PREDICTED: exosome complex component RRP41-like [Glycine max]
Length = 241
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 108/222 (48%), Gaps = 5/222 (2%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIG 93
+ LR D R + R GAV+ A GSA E GNTKVI +V+GPRE ++ S+
Sbjct: 7 EGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRSQQISSHA 66
Query: 94 RLNCNVSYTTFATPVRGQGS--DHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ C F+T R + S D + + S ++ + +E I+ P++ +D++ VL++
Sbjct: 67 LVRCEYCMANFSTGDRMRKSKGDRRSTEISLVIRQTMEACILTHLLPRSQIDIYVQVLQA 126
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACM 209
G I+ A++ALADAGI M DLV S S L L+D E+S + + +
Sbjct: 127 DGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTLGIL 186
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
P +VT L + + MQL ++ + +R L
Sbjct: 187 PKLDKVTLLQMDSKLPIDILENVMQLAIEGCKAIANYIREIL 228
>gi|118576719|ref|YP_876462.1| RNase PH [Cenarchaeum symbiosum A]
gi|259645399|sp|A0RXU1.1|ECX1_CENSY RecName: Full=Probable exosome complex exonuclease 1
gi|118195240|gb|ABK78158.1| RNase PH [Cenarchaeum symbiosum A]
Length = 243
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 122/225 (54%), Gaps = 4/225 (1%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
D + +R D R + R G +N+A+GSAY EFG+ K++ +FGPR+ K M+ +
Sbjct: 12 DENGIRCDGRKISETRRVEITAGVLNNANGSAYIEFGDNKILAGIFGPRDVHPKHMVRTE 71
Query: 92 IGRLNCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
G L C + F+ R + + + + S ++ +ALE +++LE FP+T VDVF VL+
Sbjct: 72 TGILRCRYHMSPFSVSERKKPAPSRREIEISKVIKEALEPSLMLEQFPRTAVDVFIEVLQ 131
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ G ++ ASVALADAGI M D+V++ + + +++D EE+ + +
Sbjct: 132 ADGGSRCAALAAASVALADAGIPMRDMVSACAAGKVADTIVLDVNNEEDQAGQADMPVGY 191
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
MP+ +VT + + G + ++ + +D ++ ++ + L +
Sbjct: 192 MPNLDQVTLIQLDGVLTPDEYSRCAAMAIDGCKQVYEVQKKALSD 236
>gi|329766296|ref|ZP_08257843.1| exosome complex exonuclease 1 [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|393796026|ref|ZP_10379390.1| exosome complex exonuclease 1 [Candidatus Nitrosoarchaeum limnia
BG20]
gi|329137198|gb|EGG41487.1| exosome complex exonuclease 1 [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 245
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 120/230 (52%), Gaps = 8/230 (3%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSN 91
D + +R D R + R + G + +A GSAY EFG+ K++V VFGPR+ K M ++
Sbjct: 12 DENGIRCDGRKVDEPRRIMIKAGGLKNADGSAYIEFGDNKILVGVFGPRDVHPKHMSNTD 71
Query: 92 IGRLNCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
G L F+ R + + + S ++ +ALE A++LE FP+T VDVF VL+
Sbjct: 72 TGILRVRYHMEPFSVTERKNPAPSRREIEISKVIKEALEPAVMLEKFPRTAVDVFIEVLQ 131
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ G +S ASVALADAGI M D+VA+ + +++D EE+ + I
Sbjct: 132 ADGGTRCAALSAASVALADAGIPMRDMVAACAAGKAADTIILDVNNEEDQAGQADMPIGY 191
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDE 258
MPS ++T L + G + + + C++ KI+ K+A +D+
Sbjct: 192 MPSLEKITLLQLDGVLTPAEYKK----CVETGIHGCKIVYELQKKALTDK 237
>gi|62858329|ref|NP_001016436.1| exosome component 4 [Xenopus (Silurana) tropicalis]
gi|89273823|emb|CAJ82158.1| exosome component 4 [Xenopus (Silurana) tropicalis]
gi|111598409|gb|AAH80330.1| LOC549190 protein [Xenopus (Silurana) tropicalis]
Length = 249
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 107/226 (47%), Gaps = 10/226 (4%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + ++ M + +
Sbjct: 13 RVDGRKAGELRKIRARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSKMLHDRSVV 72
Query: 96 NCNVSYTTFATPVRGQ--GSDHKDFSSMLH--KALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K LH + E AI+ + +P++ +D++ +L++ G
Sbjct: 73 NCQYSMATFSTGERKRRPHGDRKSSEMTLHLKQTFEAAILTQLYPRSQIDIYVQILQADG 132
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS 211
+ ++ A++A+ DAGI M D V + S + L D EE+ L +A +P
Sbjct: 133 GNYCTCVNAATLAVIDAGIPMRDYVCASSAGFIEDTPLADLSYVEEAAGGPQLALALLPK 192
Query: 212 RYEVTQLTVTGEWSTPHFNEAM----QLCLDASAKLGKIMRSCLKE 253
++ L + H M + C D A L +++R L+E
Sbjct: 193 SDQIALLEMNSRLHEDHLERVMDAASKACKDVYAVLDQVVREHLQE 238
>gi|268552543|ref|XP_002634254.1| C. briggsae CBR-EXOS-4.1 protein [Caenorhabditis briggsae]
gi|206557764|sp|A8WQQ5.1|EXOS4_CAEBR RecName: Full=Putative exosome complex component RRP41
Length = 240
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 108/227 (47%), Gaps = 8/227 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
R D R Q R R G +A GS Y E GNTKV+ +V+GP ESK + + +
Sbjct: 9 FRMDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYESKASKRLEDRCAIV 68
Query: 97 CNVSYTTFATPVRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
C S TTF+ R D K + S +L KA E I+ E+FP++ +D+F V++ GS
Sbjct: 69 CQYSTTTFSGLERKNRPRGDRKSTEISRLLEKAFESVILTESFPRSQIDIFCEVIQGDGS 128
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSR 212
+L ++ S+ALADAGI M + ++ + + ++D EE+ + +A + R
Sbjct: 129 NLAACVNATSLALADAGIPMKGIASAATCGIVETKPIVDLTSREETDLLPRVTLATICGR 188
Query: 213 YEVTQLTVTGEWSTPHFNEAMQ----LCLDASAKLGKIMRSCLKEAA 255
EV + + H + M C D L + + LK A
Sbjct: 189 DEVILVELQNRLHIDHLSVVMDAAKATCADVYECLAVVAQQHLKACA 235
>gi|156937005|ref|YP_001434801.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignicoccus hospitalis
KIN4/I]
gi|156565989|gb|ABU81394.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignicoccus hospitalis
KIN4/I]
Length = 241
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 115/224 (51%), Gaps = 4/224 (1%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNI 92
VD R D RG RP + G + +A GSA+ G T+V+ +V+GPRE + M+ +
Sbjct: 11 VDGKRHDGRGPADLRPLEMKVGVLYNADGSAWLRIGGTEVVAAVYGPREPPMRGMVLPDR 70
Query: 93 GRLNCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ C F+T R + + + S ++ +ALE I+ FP+T +DVF V+ +
Sbjct: 71 AVIRCRYHMAPFSTDERKNPAPSRREIELSKVIREALEATILTHLFPRTIIDVFIEVIRA 130
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACM 209
G ++ AS+ALADAGI M LVA V+V + L++D E+ Y + + +A +
Sbjct: 131 DGGTRTAALTAASLALADAGIPMKGLVAGVAVGKVQGTLVLDIDELEDMYGEADMPVAAI 190
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
PS ++ L + G F +A++L + K+ + + L E
Sbjct: 191 PSLNKIVLLQLNGVLEPREFPQALKLAWEGIKKIHAMQKKVLAE 234
>gi|307200434|gb|EFN80643.1| Exosome complex exonuclease MTR3 [Harpegnathos saltator]
Length = 215
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 102/197 (51%), Gaps = 14/197 (7%)
Query: 69 GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG---QGSDHKDFSSMLHKA 125
GNTKVI SVF PRE Y G L C + F+ R Q ++ K++S +L +A
Sbjct: 2 GNTKVICSVFDPREVPNKTGYCVQGELYCEFKFAPFSYRKRKMHQQDAEEKEYSLVLQRA 61
Query: 126 LEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLG 185
LE A+ L FP VD++A VL++GGS L I AS+ALADAG+ MY LV + ++
Sbjct: 62 LEPAVCLSEFPNFQVDIYATVLDNGGSALAAAIMAASLALADAGVPMYSLVTASTIGVYD 121
Query: 186 KNLLIDPVLEEESY-----------QDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQ 234
L+DP EEES+ G ++ A + +++++ V G ++T +M
Sbjct: 122 NTYLVDPTDEEESFCCSKTVLDANPDHGIIVQAILSQHNQISEMFVVGSFNTDTIIHSMD 181
Query: 235 LCLDASAKLGKIMRSCL 251
L A + ++ CL
Sbjct: 182 LLSTAHKDICPLLEKCL 198
>gi|241119397|ref|XP_002402568.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41, putative
[Ixodes scapularis]
gi|215493342|gb|EEC02983.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41, putative
[Ixodes scapularis]
Length = 246
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 109/222 (49%), Gaps = 6/222 (2%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R ++ R R G + A GSAY E GN KV+ +V+GP E + ++ + +
Sbjct: 13 RLDGRKPNEQRKIDCRLGVFSQADGSAYIEQGNAKVLAAVYGPHEPRGNRSRALHDRVLV 72
Query: 96 NCNVSYTTFATPVRGQG--SDHKDFSSMLH--KALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K LH + E I+ + +P++ +D+F VL+S G
Sbjct: 73 NCQFSMATFSTFERKRRPRGDKKSQEMTLHIQQTFEATILTQLYPRSQIDIFVEVLQSDG 132
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS 211
L V ++ A++AL DAGI + D V + SV + L+D EES + L +A +P
Sbjct: 133 GTLSVCVNAATLALIDAGIALKDYVCACSVGFIDGVPLVDISSIEESNRGPELTVAVLPK 192
Query: 212 RYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
++ L ++ + + + + L I S +KE
Sbjct: 193 SQQIVLLEMSSRVHVDNLEKMLDAAMKGCTDLHAIFDSRVKE 234
>gi|435852006|ref|YP_007313592.1| archaeal exosome-like complex exonuclease 1 [Methanomethylovorans
hollandica DSM 15978]
gi|433662636|gb|AGB50062.1| archaeal exosome-like complex exonuclease 1 [Methanomethylovorans
hollandica DSM 15978]
Length = 327
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMY--- 89
D + LR D R + RP G ++ A GS Y E+G K++ +V+GPRE M
Sbjct: 10 DENGLRLDGRAVDEMRPMTIEIGVLSRADGSCYLEWGKNKILAAVYGPRELHPRRMQKPD 69
Query: 90 SNIGRLNCNVSYTTFATPVR-GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
I R N++ + R G + S + A I+ + +P +DVFA VL+
Sbjct: 70 EAIVRYRYNMAAFSVEDRARPGPSRRSIEISKVSRDAFAPIIMTKYYPSAVIDVFAEVLQ 129
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ I+ AS+ALADAGI M L+++ +V + L++D +E++Y + L IA
Sbjct: 130 ADAGTRTAAINAASIALADAGIPMKGLISACAVGKVDGQLVLDLSKDEDNYGNADLPIA- 188
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
M E++ L + G + F +A+++ + ++ +I + LK
Sbjct: 189 MTQDGEISLLQMDGNLTKEEFKKALEMATEGCRQILEIQKEALK 232
>gi|158819077|ref|NP_001103659.1| exosome complex component MTR3 [Bos taurus]
gi|157743163|gb|AAI53218.1| EXOSC6 protein [Bos taurus]
Length = 272
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 117/232 (50%), Gaps = 19/232 (8%)
Query: 39 PDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI------ 92
P R + RP + R G ++ A GSAY E G TKV+ +V GPR ++
Sbjct: 28 PAPRDPARLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRPAEGGERGGGPAGAGGE 87
Query: 93 ------GRLNCNVSYTTFATPVRGQ---GSDHKDFSSMLHKALEGAIILETFPKTTVDVF 143
GRL C+ F+ R G + ++ + L +ALE A+ L +P+ ++V
Sbjct: 88 APAALRGRLLCDFRRAPFSGRRRRAPPGGGEERELALALQEALEPAVRLGRYPRAQLEVS 147
Query: 144 ALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVS---CLGKNLLIDPVLEEESYQ 200
AL+LE GGS L ++ A++ALADAG+ MYDLV +S L+DP L EE
Sbjct: 148 ALLLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSRAPAPAPAWLLDPTLLEEERA 207
Query: 201 DGSLMIACMPSRYEVTQLTVTGEWS-TPHFNEAMQLCLDASAKLGKIMRSCL 251
L +A MP +V + +GE T + EA++L L+ +L +++ CL
Sbjct: 208 SAGLTVALMPVLNQVAGVLGSGEGGPTESWAEAVRLGLEGCQRLYPVLQQCL 259
>gi|242005051|ref|XP_002423388.1| Exosome complex exonuclease RRP41, putative [Pediculus humanus
corporis]
gi|212506432|gb|EEB10650.1| Exosome complex exonuclease RRP41, putative [Pediculus humanus
corporis]
Length = 253
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 119/235 (50%), Gaps = 15/235 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK---KAMMYSNIG 93
LR D R + R + G + GSAY E GNTKV+ +V+GP + + K ++ + +
Sbjct: 10 LRLDGRRASELRQIRCKLGVFSQPDGSAYIEMGNTKVLAAVYGPHQVRGRTKPLLDAAV- 68
Query: 94 RLNCNVSYTTFATPVRGQG--SDHKDFSSMLH--KALEGAIILETFPKTTVDVFALVLES 149
+NC S F+T R + D K +H +AL AI E +PK+ +D+F VL+S
Sbjct: 69 -INCQYSSAVFSTEERKKRPRGDKKSQEKSMHLCQALSAAIKTELYPKSQIDIFVEVLQS 127
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNL-LIDPVLEEESYQDGSLMIAC 208
G ++ +++AL DAGI + + V S + S +N+ L+D EES +L IA
Sbjct: 128 DGGSFSAAVNVSTLALIDAGIPLKEYVTSCTASLANENIPLVDVTYLEESCGGPTLTIAT 187
Query: 209 MPSRYEVTQLTVTGEWSTPH----FNEAMQLCLDASAKLGK-IMRSCLKEAASDE 258
+P ++ + ++ + H N AM+ C + L + + R L+ +S++
Sbjct: 188 LPLAKKIALMEMSQRFHLDHLEKVLNTAMEGCKNIQVILNEAVKRHILQNGSSNK 242
>gi|41152247|ref|NP_957033.1| exosome complex exonuclease RRP41 [Danio rerio]
gi|37747963|gb|AAH59525.1| Exosc4 protein [Danio rerio]
gi|46403217|gb|AAS92628.1| exosome complex exonuclease RRP41 [Danio rerio]
gi|157423431|gb|AAI53618.1| Exosc4 protein [Danio rerio]
Length = 245
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 106/222 (47%), Gaps = 6/222 (2%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR--L 95
R D R + R R A GSAY E GNTK + V+GP E + + S R +
Sbjct: 13 RLDGRKATELRKVQARMSVFAQADGSAYLEQGNTKALAVVYGPHEIRGSRSKSLHDRAII 72
Query: 96 NCNVSYTTFATPVRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K + S L + E A++ E +P++ +D++ +L++ G
Sbjct: 73 NCQYSMATFSTAERKRRPHGDRKSSEMSLHLKQTFEAAVLTELYPRSQIDIYVKILQADG 132
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS 211
+ ++ A++AL DAGI M D V + S + L D EES +L +A +P
Sbjct: 133 GNYSACVNAATLALVDAGIPMRDYVCACSAGFVEDTPLADLCHAEESGGGTALALALLPR 192
Query: 212 RYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
+ L + H + M+ + A + K++ S +++
Sbjct: 193 SGNIALLQMDARLHQDHLDTLMEAAMTACKEFSKVLDSVVRQ 234
>gi|294495471|ref|YP_003541964.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanohalophilus
mahii DSM 5219]
gi|292666470|gb|ADE36319.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanohalophilus
mahii DSM 5219]
Length = 297
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 111/223 (49%), Gaps = 5/223 (2%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSN 91
D + LR D R + RP G ++ A GS Y E+GN KV+ +V+GPRE + M N
Sbjct: 10 DDEGLRLDGRRVDEIRPMKVEMGVLSRADGSCYLEWGNNKVLAAVYGPRELHPRRMQKPN 69
Query: 92 --IGRLNCNVSYTTFATPVR-GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ R N++ + +R G + S + +A E ++ + +P +DVFA VL+
Sbjct: 70 EVLVRYKYNMASFSVEDRIRPGPSRRSTEISKVSGEAFEPVVMTQYYPGAVIDVFAEVLQ 129
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ I+ A++ALADAGI M LV++ +V + L++D E++Y L +A
Sbjct: 130 ADAGTRTAAINAATLALADAGIPMKGLVSACAVGKVDGQLVLDLNKPEDNYGQADLPVA- 188
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
M E+T L + G + E +++ ++ +I R L
Sbjct: 189 MTQDGEITLLQMDGHLTPEELEEGLEMVKKGCQQIIEIQREAL 231
>gi|321465387|gb|EFX76389.1| hypothetical protein DAPPUDRAFT_213979 [Daphnia pulex]
Length = 246
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 114/225 (50%), Gaps = 10/225 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGR 94
LR D R ++ R G + A GSAY E GNTKV+ +V+GP E + K+ +
Sbjct: 12 LRIDGRKPNELRRIRCSLGIFSQADGSAYLEQGNTKVLAAVYGPHEIRGSKSKALHDKAF 71
Query: 95 LNCNVSYTTFATPVRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+NC S TF+ R + D K + S+ L + AI E +P++ +D+F VL++
Sbjct: 72 VNCQYSTATFSMGERKRRPRGDRKSTEMSTHLEETFAAAIRTELYPRSQIDIFVEVLQAD 131
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
G + ++ A +AL DAG+ + D V S + S + L+D E S L+++ +P
Sbjct: 132 GGNYTACVNAAMMALVDAGVPLKDTVVSCTASLVKDVPLVDVNHVERSGGSPELVVSILP 191
Query: 211 SRYEVTQLTVTGEWSTPHFNE----AMQLCLDASAKLGKIMRSCL 251
E+ +++T + H ++ A++ C D A L +IM+ L
Sbjct: 192 HSGEIVYMSLTQRFHIDHLSKVLDTAIKGCKDIGAILNEIMKGHL 236
>gi|213402699|ref|XP_002172122.1| conserved hypothetical protein [Schizosaccharomyces japonicus
yFS275]
gi|212000169|gb|EEB05829.1| conserved hypothetical protein [Schizosaccharomyces japonicus
yFS275]
Length = 251
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 117/220 (53%), Gaps = 21/220 (9%)
Query: 49 PAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPV 108
PA G A+G+AY E GN K+ SVFGPR +K + +S I +L C + ++ FA V
Sbjct: 12 PAVVYLGWTTKANGNAYLESGNIKIACSVFGPRPTKTSSFHS-IAKLTCELKFSPFAQTV 70
Query: 109 RG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS--DLPVVISCASV 163
R Q + +DFS + ++L +I+L +PK+++DV+ +LES G + I+CAS+
Sbjct: 71 RKSNVQDINERDFSQHIERSLAPSIMLHLYPKSSIDVYIQILESDGQLATIAAAITCASL 130
Query: 164 ALADAGIMMYDLVASV-------SVSCLGKNLLIDPVLEEESYQDGS---LMIACMPSRY 213
A+A+A I D+V S SC ++DP +E D S +++ M S
Sbjct: 131 AIANAKIDCIDIVTGASALYKQPSASC-----IVDPEESDERDADRSTSFMLVGYMASLG 185
Query: 214 EVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
+VT++ G S+ ++ ++ C D ++K + + L E
Sbjct: 186 QVTEVWTEGSLSSTDLSKLLEKCTDVASKTRLVANNVLAE 225
>gi|294464242|gb|ADE77635.1| unknown [Picea sitchensis]
Length = 243
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 107/224 (47%), Gaps = 5/224 (2%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIG 93
+ LR D R + R + G V+ A GSA E GNTKVI +V+GP E K +
Sbjct: 7 EGLRLDGRRPLEMRQLHAQLGVVDKADGSAIFEMGNTKVIAAVYGPHEVQNKNQQLPDQA 66
Query: 94 RLNCNVSYTTFAT---PVRGQGSDH-KDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ C S F+T P R +G + S ++ + +E I+ P+T +D+F VL++
Sbjct: 67 LVRCEYSMANFSTGDRPRRSKGDRRATEISLVIRQTMEATILTHLMPRTQIDIFVQVLQA 126
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACM 209
G I+ A++ALADAGI M DLV S + L L+D E+S + + M
Sbjct: 127 DGGTRSACINAATLALADAGIPMCDLVTSCAAGYLNSTPLLDMNYMEDSAGGPDVAVGLM 186
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
+++ L + + F MQL ++ + + ++ L E
Sbjct: 187 TKMDKLSLLQMDSKLPMDIFETVMQLAIEGCKAIVRYIQDVLLE 230
>gi|298674553|ref|YP_003726303.1| exosome complex exonuclease 1 [Methanohalobium evestigatum Z-7303]
gi|298287541|gb|ADI73507.1| exosome complex exonuclease 1 [Methanohalobium evestigatum Z-7303]
Length = 333
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 112/223 (50%), Gaps = 5/223 (2%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSN 91
D + LR D R + RP G ++ A GS Y E+GN K+I +V+GPRE + M +
Sbjct: 10 DENGLRVDGRRTDEIRPMKVDIGVLSRADGSCYLEWGNNKIISAVYGPRELHPRRMQRPD 69
Query: 92 IGRLNCNVSYTTFATPVR---GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ + +F+ R G + S + +A E ++ + +P T +DVF+ VLE
Sbjct: 70 AAVIRYKYNMASFSVEDRQRPGPSRRSSEISKVSSEAFEPVVMTQFYPNTVIDVFSEVLE 129
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ I+ A++AL DAGI + LV++ +V + L++D +E++ + L +A
Sbjct: 130 ADAGTRTAAINAATLALIDAGIPLKSLVSACAVGKVDGQLVLDLNKKEDNEGEADLPVA- 188
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
+ E+T L + G + +AM+L + ++ +I R L
Sbjct: 189 ITQDGEITLLQMDGHLTEDEIKQAMELVKNGCQQIQQIQREAL 231
>gi|195428613|ref|XP_002062366.1| GK17502 [Drosophila willistoni]
gi|194158451|gb|EDW73352.1| GK17502 [Drosophila willistoni]
Length = 326
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 108/236 (45%), Gaps = 23/236 (9%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS-NIGRLNCNVSYTTFAT 106
R F R G + + GSAY E+GNTKV+ V P E +A N+G LNC V+Y FAT
Sbjct: 46 RTTFLRAGVLTTVRGSAYMEYGNTKVMAIVAPPHEVVRASARRMNMGSLNCYVNYAAFAT 105
Query: 107 -PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVAL 165
+ K SSML KALE + F +DV L++E G L I+C VAL
Sbjct: 106 GELETVPRREKQLSSMLTKALEPVVCRNEFLNFQLDVRVLIIEDDGCLLSTAINCCGVAL 165
Query: 166 ADAGIMMYDLVASVSVSCLGKNLLIDP--VLEEESY-------------------QDGSL 204
+ GI YDL+ + + ++ I+P ++EE + + G L
Sbjct: 166 VECGISTYDLITASTACIYRDHVFINPNAMVEELLWKHRAGHALPSSSDDTKPIQEHGLL 225
Query: 205 MIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDEQE 260
+IA M + ++ Q G S + + L + + +++R L + ++ +
Sbjct: 226 IIASMDTFDQLAQCQQCGYLSPATYTRLLDYTLTINKGMRQLIRQVLLQRVKEQHD 281
>gi|260834851|ref|XP_002612423.1| hypothetical protein BRAFLDRAFT_121031 [Branchiostoma floridae]
gi|229297800|gb|EEN68432.1| hypothetical protein BRAFLDRAFT_121031 [Branchiostoma floridae]
Length = 246
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 109/227 (48%), Gaps = 10/227 (4%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAM--MYSNIGRL 95
R D R + R R G A GSAY E GNTK + +V+GP E +K + + +
Sbjct: 13 RIDGRRSSELRKVCARMGVFTQADGSAYIEQGNTKALATVYGPHEVRKGRGKIQHDRAVV 72
Query: 96 NCNVSYTTFATPVRG---QGSDH-KDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R +G ++ S L + E I+ E FP++ +D++ +L++ G
Sbjct: 73 NCQFSMATFSTGERKSRPKGDRRSQEMSMHLRQTFEAVIVTELFPRSQIDIYVQILQADG 132
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS 211
+ ++ A++A+ DAGI M D V + + + + L+D EES L +A MP
Sbjct: 133 GNYCACVNAATLAVIDAGIPMKDYVCACTAGFIQDSPLLDISYVEESAGAPFLTVAMMPK 192
Query: 212 RYEVTQLTVTGEWSTPHFNEAMQL----CLDASAKLGKIMRSCLKEA 254
++ L + + + + L C D A L + +R + E+
Sbjct: 193 SEQIVLLEMNSRLHADNMEKVLDLATQGCKDVFAVLDRHVRDHVSES 239
>gi|291233253|ref|XP_002736568.1| PREDICTED: exosome component 4-like [Saccoglossus kowalevskii]
Length = 246
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 109/231 (47%), Gaps = 12/231 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE---SKKAMMYSNIG 93
R D R H+ R R G A GSAY E GNTKV+ +V+GP E + ++ +
Sbjct: 12 FRADGRRPHELRKIRCRMGVFRQADGSAYIEQGNTKVLATVYGPHEITGGRSKALHDKV- 70
Query: 94 RLNCNVSYTTFAT---PVRGQGSDHKDFSSM-LHKALEGAIILETFPKTTVDVFALVLES 149
LNC S TF+T R +G SM L + + AI+ +P++ +D++ VL+S
Sbjct: 71 LLNCQYSMATFSTGERKTRPKGDRRSQEMSMNLRRTFQAAILTHLYPRSQIDIYVQVLQS 130
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACM 209
G + ++ A++A+ DAGI M D V + + S L ++D EES +++A +
Sbjct: 131 DGGNYCACVNAATLAVIDAGIPMRDYVCACTSSLLEDTPVVDISYLEESVGSPEMVVALL 190
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQL----CLDASAKLGKIMRSCLKEAAS 256
P ++ + + + + C D L + +R + E ++
Sbjct: 191 PKSEQIVLFQQNSRLHVDNLEKVLDMGIKGCTDVYGILDQSVREHVTEVSN 241
>gi|395512698|ref|XP_003760572.1| PREDICTED: exosome complex component RRP41 [Sarcophilus harrisii]
Length = 245
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 109/228 (47%), Gaps = 10/228 (4%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + ++ + +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEMRGSRSRALPDRALV 72
Query: 96 NCNVSYTTFATPVRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K + L + E AI+ + +P++ +D++ VL++ G
Sbjct: 73 NCQYSMATFSTGERKRRPHGDRKACEMGLQLRQTFEAAILTQLYPRSQIDIYVQVLQADG 132
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS 211
+ ++ A++A+ DAGI M D V + S + L D EE+ L +A +P+
Sbjct: 133 GNYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPA 192
Query: 212 RYEVTQLTVTGEWSTPHFNEAM----QLCLDASAKLGKIMRSCLKEAA 255
++ L + H + + Q D A L +++R ++EAA
Sbjct: 193 SGQLALLEMDARLHEDHLQQVLEAASQAARDVHALLDRVVRQHVREAA 240
>gi|126322962|ref|XP_001364428.1| PREDICTED: exosome complex component RRP41-like [Monodelphis
domestica]
Length = 245
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 109/228 (47%), Gaps = 10/228 (4%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + ++ + +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEMRGSRSRALPDRALV 72
Query: 96 NCNVSYTTFATPVRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K + L + E AI+ + +P++ +D++ VL++ G
Sbjct: 73 NCQYSMATFSTGERKRRPHGDRKACEMGLQLRQTFEAAILTQLYPRSQIDIYVQVLQADG 132
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS 211
+ ++ A++A+ DAGI M D V + S + L D EE+ L +A +P+
Sbjct: 133 GNYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPA 192
Query: 212 RYEVTQLTVTGEWSTPHFNEAM----QLCLDASAKLGKIMRSCLKEAA 255
++ L + H + + Q D A L +++R ++EAA
Sbjct: 193 SGQLALLEMDARLHEDHLQQVLEVASQAARDVHALLDRVVRQHVREAA 240
>gi|300176535|emb|CBK24200.2| unnamed protein product [Blastocystis hominis]
Length = 600
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 86/148 (58%), Gaps = 5/148 (3%)
Query: 54 TGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQ-- 111
TG V +ASGSAY E GN K++ SV GPR+S +++ + G L C+ Y FA Q
Sbjct: 9 TGVVKNASGSAYVELGNMKIMCSVQGPRDSFRSVDSQDKGALYCDFKYAPFAQKDVYQPN 68
Query: 112 --GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAG 169
+ K S +L K L ++ LE FPK V+++ +VLE G L + + CAS+AL DAG
Sbjct: 69 LLNRETKSMSLLLEKILSTSVDLEAFPKAVVELYIMVLEVDGDPLGLSLMCASLALTDAG 128
Query: 170 IMMYDLVASVSVSCLGKN-LLIDPVLEE 196
+ ++ L+ VS + N ++++P +E
Sbjct: 129 LNLFGLLGCCCVSVMENNQMIVNPTSDE 156
>gi|225715268|gb|ACO13480.1| Exosome complex exonuclease RRP41 [Esox lucius]
Length = 245
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 107/229 (46%), Gaps = 10/229 (4%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + ++ + +
Sbjct: 13 RLDGRKATELRKVQARMGVFAQADGSAYIEQGNTKALAVVYGPHEVRMSRSKTLHDRAVI 72
Query: 96 NCNVSYTTFATPVRGQ--GSDHKDFSSMLH--KALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K LH + E A++ +P++ +D++ +L+S G
Sbjct: 73 NCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFEAAVLTNLYPRSQIDIYVKILQSDG 132
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS 211
+ ++ A++A+ DAGI M D V + + + + L D EES SL +A +P
Sbjct: 133 GNYSACVNAATLAVIDAGIPMRDYVCACTAGFVDETPLADLCHAEESGGGTSLALALLPR 192
Query: 212 RYEVTQLTVTGEWSTPHF----NEAMQLCLDASAKLGKIMRSCLKEAAS 256
+ L + H AM C S L +++R L+E ++
Sbjct: 193 GGHIALLQMDARLHQDHLETLMEAAMTACKGVSKVLDQVVRQHLQEVSA 241
>gi|288930697|ref|YP_003434757.1| exosome complex exonuclease 1 [Ferroglobus placidus DSM 10642]
gi|288892945|gb|ADC64482.1| exosome complex exonuclease 1 [Ferroglobus placidus DSM 10642]
Length = 245
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 116/227 (51%), Gaps = 11/227 (4%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMY---S 90
VD R D R + RP G + +A GS Y E G KV+ +V+GPR+ + +
Sbjct: 9 VDGRRIDGRLPDELRPIKIEAGVLKNADGSCYLEMGKNKVMAAVYGPRKVQPKHLADPTQ 68
Query: 91 NIGRLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVL 147
I R N++ F+ R + G D + + S + +ALE I+ E FP++++D+F VL
Sbjct: 69 AIVRYRYNMA--PFSVEERKRPGPDRRSVEISKVSREALESIIMKELFPRSSIDIFVEVL 126
Query: 148 ESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIA 207
++ ++ ASVAL DAGI M ++ SV+V+ + L++DP+ EE++Y + + A
Sbjct: 127 QADAGSRTACLNAASVALVDAGIPMKGIITSVAVAKVDGVLVLDPMKEEDNYGEADIPFA 186
Query: 208 CMPSRYEVTQ---LTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
++ L + G + +A++L + ++ K+ R +
Sbjct: 187 FFIRNGKIESIALLQMDGRVTKEELMQAVELAKKGAMEIYKLQREAI 233
>gi|157133589|ref|XP_001656263.1| exosome complex exonuclease RRP41, putative [Aedes aegypti]
gi|157134369|ref|XP_001663263.1| exosome complex exonuclease RRP41, putative [Aedes aegypti]
gi|108870517|gb|EAT34742.1| AAEL013045-PA [Aedes aegypti]
gi|108870766|gb|EAT34991.1| AAEL012812-PA [Aedes aegypti]
Length = 245
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 117/225 (52%), Gaps = 8/225 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES--KKAMMYSNI 92
+ LR D R ++ R + G + GSAY E GNTKV+ +V+GP ++ KK+ I
Sbjct: 7 EGLRLDGRRANELRRIQCKLGVFSQPDGSAYIEQGNTKVLAAVYGPHQAPAKKSSHEEVI 66
Query: 93 GRLNCNVSYTTFATPVRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+NC S TF+T R + D K + + L +AL AI E +PK+ +DV+ VL
Sbjct: 67 --VNCQYSMATFSTGERKRRPRGDRKSQEMTIHLQQALSAAIKTELYPKSQIDVYIEVLM 124
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ G + ++ A++AL DAGI + + V + + S GK L+D EE +L +A
Sbjct: 125 ADGGNYCASVNAATLALIDAGICLKEYVCACTASLAGKIPLMDVSNLEEMSGGPTLTVAS 184
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
+PS ++ + ++ + H + ++ L ++ KI+ ++E
Sbjct: 185 LPSSGKIAFMEMSQRFHLDHLPKVLETALQGCREVQKIIDQAVRE 229
>gi|340377098|ref|XP_003387067.1| PREDICTED: exosome complex component RRP41-like [Amphimedon
queenslandica]
Length = 243
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 117/237 (49%), Gaps = 16/237 (6%)
Query: 28 IFSGSDVDWLRPDSRGFHQCRPAFFRTGAVN-----SASGSAYAEFGNTKVIVSVFGPRE 82
I S +D ++L P+ RP R + N A GSAY + GNT+VI +V+GP +
Sbjct: 4 ITSPADFEYLSPEGLRSDGRRPQELRVLSCNISHCLQADGSAYLQQGNTRVIATVYGPHD 63
Query: 83 SKKAMMYSNIGRLNCNVSYTTFATPVRGQ----GSDHKDFSSMLHKALEGAIILETFPKT 138
++ + +NC S TF+T R + + S L K E AI+ +T+P +
Sbjct: 64 AQHDKAF-----INCQFSMATFSTSERKKRPTGDKSCLETSLALKKTFEAAILTDTYPHS 118
Query: 139 TVDVFALVLESGGS--DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEE 196
+D+F +L+S GS D V I+ ++AL DAGI M D V + SV+ + ++D E
Sbjct: 119 KIDIFVQILQSDGSNCDKAVSINAITMALIDAGIPMKDYVCATSVTLINDTPIVDLNYFE 178
Query: 197 ESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
E L++ +P ++ L V + + ++ ++ + ++ I+ + +K+
Sbjct: 179 ERGPGPELIVGTLPKSGKIVFLQVNSRLHIDNMEKVLKEGMNGNQRVHTILDTLIKK 235
>gi|328865596|gb|EGG13982.1| Exosome complex exonuclease rrp41 [Dictyostelium fasciculatum]
Length = 244
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 111/227 (48%), Gaps = 4/227 (1%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
+ LR D R ++ R R G +N A GS+Y E GNTK+ V+++GP ES +
Sbjct: 10 EGLRIDGRRSNEIRRLNMRMGVLNRADGSSYYEQGNTKITVAIYGPHESTTQKSLFDRAS 69
Query: 95 LNCNVSYTTFATPVRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ C + ++F+T R S + S+++ +A E ++ FP++ +D++ VL+S
Sbjct: 70 IKCEFAMSSFSTSERKVKSRFDKTAYETSTLIKQAFESTVLTHLFPRSQIDIYVQVLQSD 129
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
G I+ ++A+ DAGI M D V + S + + + L+D EE L+++ P
Sbjct: 130 GGLKSAAINAVTLAMIDAGIPMRDYVCACSATFIEGSALMDLNHMEERSGGADLLLSIHP 189
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASD 257
V + + + F + + L K+ +++ +K+ + D
Sbjct: 190 QLGGVISINMESKVPQEMFESVLDMALAGCKKIYYLLQEQVKKHSKD 236
>gi|225709136|gb|ACO10414.1| Exosome complex exonuclease RRP41 [Caligus rogercresseyi]
Length = 246
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 113/229 (49%), Gaps = 9/229 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVN-SASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR- 94
LR D R + R R GA + SA GSAY E GNTKV+ +V+GPRE + N +
Sbjct: 9 LRLDGRKSDELRRLRCRLGAFSWSADGSAYLEMGNTKVLAAVYGPREPRGGSSGDNSNKE 68
Query: 95 ---LNCNVSYTTFATPVRGQGS--DHK--DFSSMLHKALEGAIILETFPKTTVDVFALVL 147
LN S F+T R Q D + + ++ L + I E +P++ +D+F VL
Sbjct: 69 EAILNVQFSSAAFSTAERKQRQRGDKRSLEMAAHLKQTFAACIQTELYPRSQIDIFVEVL 128
Query: 148 ESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIA 207
++ G ++ A++AL AGI + D V + S S + + L+D + E + L++A
Sbjct: 129 QTDGGHYCASVNAATLALIHAGIPLRDYVCACSASLIKETPLLDISMLESNLGGPELILA 188
Query: 208 CMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAAS 256
+P E+ L ++ + H + + L+ + K+ I+ +++ S
Sbjct: 189 ALPKSGEIVLLEMSQRFHMDHLEKVIDEALEGTRKIRDILDEVVRDHLS 237
>gi|442749707|gb|JAA67013.1| Putative exosomal 3'-5' exoribonuclease complex subunit rrp41
[Ixodes ricinus]
Length = 246
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 108/222 (48%), Gaps = 6/222 (2%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G + A GSAY E GN KV+ +V+GP E + ++ + +
Sbjct: 13 RLDGRKPTEQRKIDCRLGVFSQADGSAYIEQGNAKVLAAVYGPHEPRGNRSRALHDRVLV 72
Query: 96 NCNVSYTTFATPVRGQG--SDHKDFSSMLH--KALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K LH + E I+ + +P++ +D+F VL+S G
Sbjct: 73 NCQFSMATFSTFERKRRPRGDKKSQEMTLHIQQTFEATILTQLYPRSQIDIFVEVLQSDG 132
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS 211
L V ++ A++AL DAGI + D V + SV + L+D EES + L +A +P
Sbjct: 133 GTLSVCVNAATLALIDAGIALKDYVCACSVGFIDGVPLVDISSIEESNRGPELTVAVLPK 192
Query: 212 RYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
++ L ++ + + + + + I S +KE
Sbjct: 193 SQQIVLLEMSSRVHVDNLEKMLDAAMKGCTDVHAIFDSRVKE 234
>gi|213514504|ref|NP_001134304.1| Exosome complex exonuclease RRP41 [Salmo salar]
gi|209732228|gb|ACI66983.1| Exosome complex exonuclease RRP41 [Salmo salar]
Length = 245
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 104/222 (46%), Gaps = 6/222 (2%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + ++ + +
Sbjct: 13 RLDGRKAAELRKVQARMGVFAQADGSAYIEQGNTKALAVVYGPHEVRGSRSKTLHDRAVI 72
Query: 96 NCNVSYTTFATPVRGQ--GSDHKDFSSMLH--KALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K LH + E A++ +P++ +D++ +L+S G
Sbjct: 73 NCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFEAAVLTNLYPRSQIDIYVKILQSDG 132
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS 211
+ ++ A++A+ DAGI M D V + + + + L D EES SL +A +P
Sbjct: 133 GNYSACVNAATLAVVDAGIPMRDYVCACTAGFVDETPLADLCHAEESGGGTSLALALLPR 192
Query: 212 RYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
+ L + H M+ + A + K++ +++
Sbjct: 193 GGHIALLQMDARLHQDHLETLMEAAMTACKGVSKVLDEVVRQ 234
>gi|308512717|gb|ADO33012.1| exosome complex exonuclease RRP41 [Biston betularia]
Length = 245
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 113/228 (49%), Gaps = 11/228 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R ++ R + G GSAY E GNTKV+ +V+GP ++ K+ M + +N
Sbjct: 8 LRLDGRRPNELRRIRCKLGVFKQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSNEGVVVN 67
Query: 97 CNVSYTTFATPVRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
C S TF+T R D K + S L +AL AI E +P++ +DV+ VL++ GS
Sbjct: 68 CQYSMATFSTGERKNRPHGDRKSTEMSLHLRQALTAAIKTELYPRSQIDVYVEVLQADGS 127
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNL---LIDPVLEEESYQDGSLMIACM 209
V ++ A++AL DAGI + + S S ++ L+D EE+ L +A +
Sbjct: 128 CYCVCVNAATLALIDAGIPLRAYACACSASMSWRDDAEPLLDVGHVEEAAGGVCLTVASL 187
Query: 210 PSRYEVTQLTVTGEWSTPHFN----EAMQLCLDASAKLGKIMRSCLKE 253
PS + L ++ +F+ AMQ C D L K +R L +
Sbjct: 188 PSTGRIALLEMSHRLHMDYFDIVLSRAMQGCRDIEVVLDKAVREHLAQ 235
>gi|308491849|ref|XP_003108115.1| CRE-TIN-9.2 protein [Caenorhabditis remanei]
gi|308248963|gb|EFO92915.1| CRE-TIN-9.2 protein [Caenorhabditis remanei]
Length = 372
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 102/203 (50%), Gaps = 17/203 (8%)
Query: 2 AAKPSTTTTAKATYSPIDPTRKTRPPIFS--GSDVDWLRPDSRGFHQCRPAFFRTGAVNS 59
+AKP T ++ T +P T I S G +D RP Q R R G +
Sbjct: 99 SAKPEQTPASQTTETP------TTMSIISEHGFRIDGRRP-----AQIRNINTRLGLNRN 147
Query: 60 ASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQG--SDHK- 116
A GS Y E GNTKV+ +V+GP E K + + + C S TTF+ R D K
Sbjct: 148 AEGSCYLEHGNTKVLCAVYGPYEGKASKRLEDRCAIVCQYSTTTFSGLERKNRPRGDRKS 207
Query: 117 -DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDL 175
+ S +L KA E I+ E+FP++ +D+F V++ GS+L ++ S+ALADAGI M +
Sbjct: 208 TEISRLLEKAFESVILTESFPRSQIDIFCEVIQGDGSNLAACVNATSLALADAGIPMKGI 267
Query: 176 VASVSVSCLGKNLLIDPVLEEES 198
++ + + ++D EE+
Sbjct: 268 ASAATCGIVDAKPIVDLTSREET 290
>gi|391326561|ref|XP_003737781.1| PREDICTED: exosome complex component RRP41-like [Metaseiulus
occidentalis]
Length = 247
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 109/225 (48%), Gaps = 6/225 (2%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
+ R D R + R G A GSAY + GNT V+ +V+GP E + + + R
Sbjct: 10 EGFRVDGRRAQEMRKLDCSLGVFAQADGSAYVKEGNTVVLAAVYGPHEVRGGRVKALHDR 69
Query: 95 --LNCNVSYTTFATPVRGQG--SDHKDFSSMLH--KALEGAIILETFPKTTVDVFALVLE 148
+NC S TF+T R + D K LH + E AI+ + +P+ +D+F VL+
Sbjct: 70 AVVNCQFSAATFSTAERKRRPRGDTKSVEMTLHLQQTFETAILTKLYPRCQIDIFVEVLQ 129
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ GS L V I+ A++AL DAGI + D V + S L+D EES + L +A
Sbjct: 130 ADGSILSVAINAATMALVDAGIGLRDYVCACSAGVFNDAALLDLNNLEESQKGTGLTVAI 189
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
+P + + ++ + + H ++ ++ ++ + + +KE
Sbjct: 190 LPKTERIVLVDMSSKIHSDHVSKTIEAAIEGCKDIHATFDAKIKE 234
>gi|145592134|ref|YP_001154136.1| exosome complex exonuclease Rrp41 [Pyrobaculum arsenaticum DSM
13514]
gi|379003148|ref|YP_005258820.1| archaeal exosome-like complex exonuclease 1 [Pyrobaculum oguniense
TE7]
gi|254782535|sp|A4WM67.1|ECX1_PYRAR RecName: Full=Probable exosome complex exonuclease 1
gi|145283902|gb|ABP51484.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum
arsenaticum DSM 13514]
gi|375158601|gb|AFA38213.1| archaeal exosome-like complex exonuclease 1 [Pyrobaculum oguniense
TE7]
Length = 246
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 115/225 (51%), Gaps = 13/225 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRL 95
+R D R Q R G V++A GSA +G T + +V+GPRE + + + G +
Sbjct: 13 VRADGRLPDQMREVKISVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVM 72
Query: 96 NCNVSYTTFAT--------PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVL 147
F+T P R + + S +L +ALE A++LE +P++ +DVF ++
Sbjct: 73 RVRYHMAPFSTKDERKSPTPSRRE----IEISKVLREALEPAVLLEQYPRSRIDVFIEII 128
Query: 148 ESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIA 207
++ GS ++ AS+ALADAGI M DLV VSV + +++D E++Y +G L +
Sbjct: 129 QADGSTRVASLTAASLALADAGIYMRDLVVGVSVGLVDGVVVLDLNGLEDNYGEGDLPVG 188
Query: 208 CMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
MP+ L + G W F +A+ L + + + +I R LK
Sbjct: 189 YMPNLKRFVLLQLDGAWKREVFLQALNLAVKGAEYVYQIARDALK 233
>gi|148228965|ref|NP_001088679.1| exosome component 4 [Xenopus laevis]
gi|56270437|gb|AAH87307.1| LOC495942 protein [Xenopus laevis]
Length = 249
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 106/229 (46%), Gaps = 10/229 (4%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + ++ M + +
Sbjct: 13 RVDGRKAGELRKIRARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSKMLHDRCVI 72
Query: 96 NCNVSYTTFATPVRGQ--GSDHKDFSSMLH--KALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K LH + E AI+ + +P++ +D++ +L++ G
Sbjct: 73 NCQYSMATFSTGERKRRPHGDRKSSEMTLHLKQTFEAAILTQLYPRSQIDIYVQILQADG 132
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS 211
+ ++ A++A+ DAGI M D V + S + L D EE+ L +A +P
Sbjct: 133 GNYCTCVNAATLAVIDAGIPMRDYVCACSAGFIEDTPLADLSYVEEATGGPQLALALLPK 192
Query: 212 RYEVTQLTVTGEWSTPHFNEAMQ----LCLDASAKLGKIMRSCLKEAAS 256
++ L + H M+ C D L +++R +E +
Sbjct: 193 SDQIALLEMNSRLHEDHLERVMEAVSKACKDVYTVLDQVVREHAQEVTT 241
>gi|71981632|ref|NP_001021274.1| Protein EXOS-4.1, isoform a [Caenorhabditis elegans]
gi|6226696|sp|Q17533.2|EXOS4_CAEEL RecName: Full=Putative exosome complex component RRP41; AltName:
Full=Ribosomal RNA-processing protein 41
gi|3873830|emb|CAA97771.3| Protein EXOS-4.1, isoform a [Caenorhabditis elegans]
Length = 240
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 106/227 (46%), Gaps = 8/227 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
R D R Q R R G +A GS Y E GNTKV+ +V+GP E K + + +
Sbjct: 9 FRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKSSKRIEDKCAIV 68
Query: 97 CNVSYTTFATPVRGQGS--DHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
C S T F+ R + D K + S +L KA E I+ E FP++ +D+F V++ GS
Sbjct: 69 CQYSATKFSGLERKNRTRGDRKSTEISRLLEKAFESVILTEAFPRSQLDIFCEVIQGDGS 128
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSR 212
+L ++ S+ALADAGI M + ++ + + ++D EE+ + +A + R
Sbjct: 129 NLAACVNATSLALADAGIPMKGIASAATCGVVDGKPIVDLTSREETDLLPRVTLATICGR 188
Query: 213 YEVTQLTVTGEWSTPHFNEAMQ----LCLDASAKLGKIMRSCLKEAA 255
EV + + H + M C D L + + LK A
Sbjct: 189 DEVILVELQNRLHIDHLSTVMDAAKATCADVYECLAVVAQQHLKACA 235
>gi|312375907|gb|EFR23155.1| hypothetical protein AND_13423 [Anopheles darlingi]
Length = 246
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 117/224 (52%), Gaps = 9/224 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSNIGR 94
LR D R ++ R + G + GSAY E GNTKV+ +V+GP + SKK+ I
Sbjct: 9 LRLDGRRANELRHIQCKLGVFSQPDGSAYVEQGNTKVLAAVYGPHQASSKKSNHEEAI-- 66
Query: 95 LNCNVSYTTFATPVRGQ--GSDHKDFSSMLH--KALEGAIILETFPKTTVDVFALVLESG 150
+NC S TF+T R + D K +H +AL AI +E +P++ +DV+ VL++
Sbjct: 67 VNCQYSMATFSTGERKKRPRGDRKSQEMTIHLKQALSAAIKMELYPRSQIDVYIEVLQAD 126
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNL-LIDPVLEEESYQDGSLMIACM 209
G + ++ A++AL DAGI + + V + + S N+ L+D EE+ +L +A +
Sbjct: 127 GGNYCASVNAATLALIDAGICLKEYVCACTASLANGNVPLMDVSHLEENSGGPTLTVASL 186
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
PS ++ + ++ + H + ++ L ++ ++ ++E
Sbjct: 187 PSSGKIAFMEMSQRFHLDHLPKVLETALKGCREVQNVIDRAVRE 230
>gi|156388129|ref|XP_001634554.1| predicted protein [Nematostella vectensis]
gi|156221638|gb|EDO42491.1| predicted protein [Nematostella vectensis]
Length = 247
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 113/226 (50%), Gaps = 6/226 (2%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIG 93
+ LR D R + R + G ++ A GSAY E GNTK + +V+GP E KA +
Sbjct: 10 EGLRIDGRKASELRKMVCKVGVLSQADGSAYIEMGNTKALATVYGPHEVQNKAKALHDRV 69
Query: 94 RLNCNVSYTTFATPVRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
LN TF+T R + D K + S M+ + E AI++ +P++ +D++ VL++
Sbjct: 70 LLNVQFGMATFSTGERKKKPRGDRKATELSMMVRRTFEAAILINLYPRSQIDIYVQVLQA 129
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACM 209
G + I+ ++AL +AGI + D V++ +VS + L+D EES L +A +
Sbjct: 130 DGGNHVACINAVTLALINAGIPLKDYVSACTVSFVNDTPLMDINYLEESTGGPQLTLAIL 189
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIM-RSCLKEA 254
P ++ + + ++ + L + + ++ R+ L++A
Sbjct: 190 PKSDKIVLFQMDSRLHMDNMDKVLALAMKGCKDIYVLLHRTILEDA 235
>gi|297722695|ref|NP_001173711.1| Os03g0844450 [Oryza sativa Japonica Group]
gi|255675044|dbj|BAH92439.1| Os03g0844450, partial [Oryza sativa Japonica Group]
Length = 94
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 59/75 (78%)
Query: 182 SCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASA 241
SC GKN++IDP +EE++QDGSLM+A MP+R E+TQLT+TGEWS A++LC+DA +
Sbjct: 17 SCFGKNIIIDPTSDEEAWQDGSLMVAYMPARKEITQLTLTGEWSDGKITNAVELCMDACS 76
Query: 242 KLGKIMRSCLKEAAS 256
KL I+R LK+A+S
Sbjct: 77 KLCDILRERLKDASS 91
>gi|91772267|ref|YP_564959.1| exosome complex exonuclease Rrp41 [Methanococcoides burtonii DSM
6242]
gi|91711282|gb|ABE51209.1| Archaeal exosome complex RNA-binding protein [Methanococcoides
burtonii DSM 6242]
Length = 343
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 113/234 (48%), Gaps = 7/234 (2%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMY--- 89
D + LR D R + RP G ++ A GS Y E+GN KV+ +V+GPRE +
Sbjct: 10 DENGLRLDGRRVDEIRPMTVEMGVLSRADGSCYLEWGNNKVLAAVYGPRELHPRRLQRPS 69
Query: 90 SNIGRLNCNVSYTTFATPVR-GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ R N++ + +R G + S + +A E ++ + +P +DVFA VL+
Sbjct: 70 EALVRYRYNMAAFSVEDRIRPGPSRRSTEISKVSGEAFETVVMKQFYPGAVIDVFAEVLQ 129
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ I+ A++AL DAGI M LVA+ +V + L+ID E++Y D L IA
Sbjct: 130 ADAGTRTAAINAATLALVDAGIPMKGLVAACAVGKVDGQLVIDLNKPEDNYGDADLPIA- 188
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL--KEAASDEQE 260
M E+T L + G + + +++ ++ I + L K +DE E
Sbjct: 189 MTEDGEITLLQMDGNLTADEIAKGVEMVRKGCEQIFAIQKEALLSKFGTTDEME 242
>gi|357625482|gb|EHJ75909.1| putative exosome complex exonuclease RRP41 [Danaus plexippus]
Length = 251
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 115/231 (49%), Gaps = 13/231 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL- 95
LR D R ++ R + G GSAY E GNTKV+ +V+GP + ++ S G +
Sbjct: 12 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQVRRFRKSSAEGVVV 71
Query: 96 NCNVSYTTFATPVRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R D K + S L +AL AI E +P++ +D++ VL++ G
Sbjct: 72 NCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSQIDIYVEVLQADG 131
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLE----EESYQDGSLMIA 207
++ +++AL DAGI + V S S S + + +P+L+ EE+ +L +A
Sbjct: 132 GAYCASVNASTLALIDAGIPLKAYVCSCSASMAWLDGVPEPLLDVGHVEEAAGGVTLTVA 191
Query: 208 CMPSRYEVTQLTVTGEWSTPHFN----EAMQLCLDASAKLGKIMRSCLKEA 254
+PS + L ++ + +F+ AMQ C D L K +R L E
Sbjct: 192 SLPSTGSIALLELSHRLHSDYFDTVLSRAMQGCRDIEVILDKAVRDHLAEG 242
>gi|358056451|dbj|GAA97625.1| hypothetical protein E5Q_04303 [Mixia osmundae IAM 14324]
Length = 260
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 133/254 (52%), Gaps = 16/254 (6%)
Query: 9 TTAKATYSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEF 68
T+AK Y + T++ RP +R D R + R F +TG V A+GS Y E
Sbjct: 11 TSAKLIYDDVQATQEARPE----EGTTPVRSDGRAWSDLRSHFVKTGIVQDANGSCYIEA 66
Query: 69 GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYT--TFATPVR--GQGSDHKDFSSMLHK 124
G+TK++ +V+GP S A+ + +L V +T TF R G+G++ S+ +H+
Sbjct: 67 GSTKLLCAVYGPHAS--AINTTPAAKLEVEVKFTPSTFPGSRRAPGKGTESASLSADIHQ 124
Query: 125 ALEGAIILETFPKTTVDVFALVLESGG--SDLPVVISCASVALADAGIMMYDLV----AS 178
AL +++L+ P++T+ V +L+ G +D+ I+ AS+ALA A I M LV A
Sbjct: 125 ALLPSLLLDRIPRSTISVHVTLLQWDGPLTDISAGITAASLALASAKIEMRGLVIGTCAV 184
Query: 179 VSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLD 238
+ + + IDP +E + +ACMP+ ++ L V+G+ S ++A++ +
Sbjct: 185 IRQTEDASIVAIDPTADEVDLSVAQVSMACMPALGTLSLLEVSGKASLTQIDQAIERMTE 244
Query: 239 ASAKLGKIMRSCLK 252
ASA++ I + L+
Sbjct: 245 ASARMHSISATSLQ 258
>gi|145346010|ref|XP_001417490.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577717|gb|ABO95783.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 240
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 103/228 (45%), Gaps = 13/228 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D+R CR V +A+GSAY E G+TK +V+GPR + + + G L+
Sbjct: 8 REDARADAHCRALVVALDVVPAAAGSAYVELGDTKASCAVYGPRRGRAELAGVDRGTLDV 67
Query: 98 NVSYTTFATPVRG-------------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFA 144
+ FAT R + + + +AL +++ E+FPKT VD
Sbjct: 68 DAYRAPFATGARALDGANRARARGRGARTADDGLARTVKEALSASVLTESFPKTQVDACV 127
Query: 145 LVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSL 204
VL++ G + + AS ALA AG+ DLV++ + G+ +++DP EE DG +
Sbjct: 128 TVLDARGGEAVACVLAASAALARAGVACRDLVSACECARAGERMMLDPTREEIETSDGMV 187
Query: 205 MIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
+A M S + G W+ A+ C + ++R L+
Sbjct: 188 FLAQMSSMEAYAKTETFGRWNADETERALDACAAGCNRFDAVLREALR 235
>gi|189239465|ref|XP_975230.2| PREDICTED: similar to exosome complex exonuclease RRP41, putative
[Tribolium castaneum]
Length = 249
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 114/229 (49%), Gaps = 9/229 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R + R + G GSAY E G TKV+ +V+GP + A + +N
Sbjct: 13 LRQDGRRADELRRIRCKLGVFTEPDGSAYLEQGLTKVLAAVYGPHQVGFAKAQHDSAVVN 72
Query: 97 CNVSYTTFATPVRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
C S F+T R + D K + S L +AL AI +E +P T +DV+ VL + G
Sbjct: 73 CQFSMAVFSTGERKKRPRGDRKSTEISIHLRQALTAAIKVELYPWTQIDVYVEVLHADGG 132
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNL-LIDPVLEEESYQDGSLMIACMPS 211
P ++ A++AL DAGI + + V + + S ++ L+D +EE +L +A +P
Sbjct: 133 IYPACVNAATLALIDAGIPLKEYVCACTASLANNDVPLLDVSHQEEIIGGPTLTVAALPM 192
Query: 212 RYEVTQLTVTGEWSTPH----FNEAMQLCLDASAKLGKIMRSCLKEAAS 256
++ + ++ + H ++A+Q C D + L + ++S +++ S
Sbjct: 193 SGKIVLMEMSQRFHVDHLQKVLDKALQGCKDIKSILDEAVKSHIQDVGS 241
>gi|239788290|dbj|BAH70834.1| ACYPI001085 [Acyrthosiphon pisum]
Length = 213
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 97/180 (53%), Gaps = 6/180 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSNIGR 94
LR D R + R + G N GSAY E GNTKV+ +++GP E + +A ++
Sbjct: 9 LRTDGRRSGELRRIRCKMGVFNQPDGSAYLEQGNTKVVAAIYGPHEIRTNRAKAPNDSAV 68
Query: 95 LNCNVSYTTFATPVRGQG-SDHKDFSSMLH--KALEGAIILETFPKTTVDVFALVLESGG 151
+NC S TF+ R + D+K LH +A+ AI + +PK+ +D+F VL+S G
Sbjct: 69 INCQYSMATFSRSERKRRPRDNKSAELTLHLKQAMATAIKTDLYPKSQIDIFVQVLQSDG 128
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCL-GKNLLIDPVLEEESYQDGSLMIACMP 210
+ V ++ A++AL DAGI M + V S + S G+ L+D EE+ SL +A +P
Sbjct: 129 GNYSVCVNAATLALIDAGIAMEEFVISCTSSLANGETPLVDISHLEETMGGPSLTVAILP 188
>gi|242088177|ref|XP_002439921.1| hypothetical protein SORBIDRAFT_09g022550 [Sorghum bicolor]
gi|241945206|gb|EES18351.1| hypothetical protein SORBIDRAFT_09g022550 [Sorghum bicolor]
Length = 242
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 109/231 (47%), Gaps = 11/231 (4%)
Query: 29 FSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE--SKKA 86
+G VD RP ++ R G V A GSA E GNT+VI +V+GPRE +K
Sbjct: 7 LTGFRVDGRRP-----NEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKGQ 61
Query: 87 MMYSNIGRLNCNVSYTTFATPVRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDV 142
+ SN + C F+T R + D + + S ++ + +E +I+ P++ +D+
Sbjct: 62 QVNSNEALVRCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPRSQIDI 121
Query: 143 FALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDG 202
+ VL++ G I+ A++ALADAGI M D+V S S L L+D E+S
Sbjct: 122 YVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLCSTPLLDLNYLEDSAGGS 181
Query: 203 SLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
+ + + +VT L + + F M L ++ + +R L E
Sbjct: 182 DVTVGILAKMDKVTLLQMDAKLPMDTFENVMGLAIEGCKAIATYIREVLLE 232
>gi|440904353|gb|ELR54878.1| Exosome complex exonuclease RRP41 [Bos grunniens mutus]
Length = 244
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 107/228 (46%), Gaps = 11/228 (4%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRLN 96
R D R + R R G A GSAY E GNTK + V+GP E S +A + +N
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEASSRARALPDRALVN 72
Query: 97 CNVSYTTFATPVRGQGSDHKDFSS-----MLHKALEGAIILETFPKTTVDVFALVLESGG 151
C S TF+T R + H D S L + E AI+ + P++ +D++ VL++ G
Sbjct: 73 CQYSSATFSTGERKR-RPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 131
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS 211
++ A++A+ DAGI M D V + S + L D EE+ L +A +P+
Sbjct: 132 GTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPA 191
Query: 212 RYEVTQLTVTGEWSTPHFNEAMQLCLDASAK----LGKIMRSCLKEAA 255
++ L + H + ++ AS L +++R ++EA+
Sbjct: 192 SGQIALLEMDARLHEDHLEQVLEAAARASRDVHTVLDRVVRQHVQEAS 239
>gi|311253303|ref|XP_003125499.1| PREDICTED: exosome complex component RRP41-like isoform 1 [Sus
scrofa]
Length = 245
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 107/229 (46%), Gaps = 12/229 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + ++ + +
Sbjct: 13 RVDGRRARELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72
Query: 96 NCNVSYTTFATPVRGQGSDHKDFSS-----MLHKALEGAIILETFPKTTVDVFALVLESG 150
NC S TF+T R + H D S L +A E AI+ + P++ +D++ VL++
Sbjct: 73 NCQYSSATFSTGERKR-RPHGDRKSCEMGLQLRQAFEAAILTQLHPRSQIDIYVQVLQAD 131
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
G ++ A++A+ DAGI M D V + S + L D EE+ L +A +P
Sbjct: 132 GGIYAACVNVATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLP 191
Query: 211 SRYEVTQLTVTGEWSTPHFNE----AMQLCLDASAKLGKIMRSCLKEAA 255
+ ++ L + H + A Q D L +++R ++EA+
Sbjct: 192 ASGQIALLEMDARLHEDHLEQVLEAAAQAARDVHTVLDRVVRQHVQEAS 240
>gi|297683870|ref|XP_002819616.1| PREDICTED: exosome complex component RRP41 [Pongo abelii]
Length = 343
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 104/229 (45%), Gaps = 12/229 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GS Y E GNTK + V+GP E + +A + +
Sbjct: 111 RVDGRRAGELRKIQARMGVFAQADGSGYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 170
Query: 96 NCNVSYTTFATPVRGQGSDHKDFSS-----MLHKALEGAIILETFPKTTVDVFALVLESG 150
NC S TF+T R + H D S L + E AI+ + P++ +D++ VL++
Sbjct: 171 NCQYSSATFSTGERKR-RRHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQAD 229
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
G ++ A++A+ DAGI M D V + S + L D EE+ L +A +P
Sbjct: 230 GGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLP 289
Query: 211 SRYEVTQLTVTGEWSTPHFNE----AMQLCLDASAKLGKIMRSCLKEAA 255
+ ++ L + H A Q D L +++R ++EA+
Sbjct: 290 ASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQHVREAS 338
>gi|452824943|gb|EME31943.1| exosome complex component MTR3, animal type [Galdieria sulphuraria]
Length = 264
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 117/238 (49%), Gaps = 21/238 (8%)
Query: 42 RGFHQCRP------AFFRTGAVNSASGSAYAEFGNTKVIVSVFGPR---ESKKAMMYSNI 92
R + + RP TG V A+GS Y E G TKVIV+V GPR + + +
Sbjct: 21 REYQRTRPNNAPRSLVLNTGTVVDAAGSGYVELGKTKVIVAVQGPRPPIRIRGGVENTMN 80
Query: 93 GRLNCNVSYTTF----------ATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDV 142
GR+ C V ++F A RG + + S+ L + E +IL+ +PK ++D+
Sbjct: 81 GRITCEVVKSSFCYYSYESTRMANVGRGVSEEERLLSTRLVRVFEPIVILDKYPKCSIDL 140
Query: 143 FALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKN-LLIDPVLEEESYQD 201
+ ++LE GS + S+ALADA I + +V+SV+V+ K L+DP E
Sbjct: 141 YVVILEDDGSAFAAMTLATSLALADASIEIISVVSSVTVAISTKQEYLVDPDRTESECAV 200
Query: 202 GSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIM-RSCLKEAASDE 258
G + ++ ++ ++ TG+ S + A+QL ++ + +G M + L+E +E
Sbjct: 201 GLITVSLPLHAAQLCEIQHTGKLSIQVWLSAVQLAVEVAQTIGNSMCQFLLQEMEKNE 258
>gi|296227067|ref|XP_002759197.1| PREDICTED: exosome complex component RRP41 [Callithrix jacchus]
Length = 245
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 106/229 (46%), Gaps = 12/229 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + +A + +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 96 NCNVSYTTFATPVRGQGSDHKDFSS-----MLHKALEGAIILETFPKTTVDVFALVLESG 150
NC S TF+T R + H D S L + E AI+ + P++ +D++ VL++
Sbjct: 73 NCQYSSATFSTGERKR-RPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQAD 131
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
G ++ A++A+ DAGI M D V + S + L D EE+ L +A +P
Sbjct: 132 GGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLP 191
Query: 211 SRYEVTQLTVTGEWSTPHFNE----AMQLCLDASAKLGKIMRSCLKEAA 255
+ ++ L + H + A Q D L +++R ++EA+
Sbjct: 192 ASGQIALLEMDARLHEDHLEQVLEAAAQAAQDVHILLDRVVRQHVREAS 240
>gi|308802860|ref|XP_003078743.1| ribonuclease PH (ISS) [Ostreococcus tauri]
gi|116057196|emb|CAL51623.1| ribonuclease PH (ISS) [Ostreococcus tauri]
Length = 693
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 104/210 (49%), Gaps = 15/210 (7%)
Query: 60 ASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPV-----RGQGSD 114
ASGS+Y E GNTKV +V+GPR + + N G ++ +V FA RG+ ++
Sbjct: 484 ASGSSYVELGNTKVSCAVYGPRRPRVDDLTVNTGVIDVDVFRVPFARKRAIHVERGRENE 543
Query: 115 HK----------DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVA 164
+ + S+ + L + ETFP+ VDV+ +++S G ++ + AS A
Sbjct: 544 REKDLNRSAADVELSARIADVLRACALTETFPRAQVDVYVTIMDSDGGEVVASVLAASAA 603
Query: 165 LADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEW 224
LA AG+ M DL ++ + +G+ L++DP EE +G + +A M S + Q G W
Sbjct: 604 LARAGVEMADLASACELVRIGERLVLDPTEEECERGNGKVFLAQMSSEEGMVQGETFGRW 663
Query: 225 STPHFNEAMQLCLDASAKLGKIMRSCLKEA 254
+ A++ C + I+R L ++
Sbjct: 664 TADESRRALEQCAAGCNRFDTIVREALAKS 693
>gi|330803994|ref|XP_003289985.1| hypothetical protein DICPUDRAFT_88747 [Dictyostelium purpureum]
gi|325079933|gb|EGC33511.1| hypothetical protein DICPUDRAFT_88747 [Dictyostelium purpureum]
Length = 247
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 114/232 (49%), Gaps = 11/232 (4%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE---SKKAMMYSN 91
+ LR D R ++ R + G N A GSAY E GNTK+I +V+GPRE S +++
Sbjct: 10 EGLRIDGRRANELRRINIQMGVSNRADGSAYYEQGNTKIIAAVYGPREISVSGQSIFDRA 69
Query: 92 IGRLNCNVSYTTFATPVRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFAL 145
I + C + ++F+T R K + S+++ +A E I +P++ ++++
Sbjct: 70 I--VKCEFATSSFSTTERKPQQKTKGDRATTEISNLVKQAFESTIQTHLYPRSQINIYIQ 127
Query: 146 VLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLM 205
VL+S G I+ +++AL DAGI M D V +VS SC+ ++D EE +
Sbjct: 128 VLQSDGGLKAAAINASTLALIDAGISMKDFVCAVSTSCIDGVAVLDLNHIEERSGGPDCL 187
Query: 206 IACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASD 257
++ P V L + + F ++L K+ I+ +K+ ++D
Sbjct: 188 LSIQPQIGGVISLNMDSKVPQDLFESVLELGEKGCKKIFSILSDQVKKYSTD 239
>gi|195996065|ref|XP_002107901.1| hypothetical protein TRIADDRAFT_51876 [Trichoplax adhaerens]
gi|190588677|gb|EDV28699.1| hypothetical protein TRIADDRAFT_51876 [Trichoplax adhaerens]
Length = 243
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 115/232 (49%), Gaps = 10/232 (4%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIG 93
+ LR D R + R R G ++ A GSAY E GNTK + S+ GP ++ KA + +
Sbjct: 7 EGLRIDGRRPEEIRRFNCRLGVLSRADGSAYLEQGNTKALASINGPHQAGDKAKIKHDRV 66
Query: 94 RLNCNVSYTTFATPVRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+N S TF+T R D + D S ++ + + AI+ + +PK+ +D+ +L++
Sbjct: 67 HINFQYSMATFSTNERRNRPKGDKRSIDISQLMREIFQSAILTDLYPKSQIDIHVQILQA 126
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEE-SYQDGSLMIAC 208
G + I+ A++AL DAG+ M D + S + S + +ID EE + + L +A
Sbjct: 127 DGGNYSACINAATLALMDAGVPMKDFICSCTASLVDSKTIIDVNNSEELHFSNPLLTLAI 186
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMR----SCLKEAAS 256
+P+ E+ + H + ++ + + +IM + ++EAA+
Sbjct: 187 LPTSEEIILCQMKSRLHADHLEDILKAGIKGCKDIYEIMHREVLNHVREAAA 238
>gi|393221006|gb|EJD06491.1| exosome component 4 [Fomitiporia mediterranea MF3/22]
Length = 284
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 113/248 (45%), Gaps = 16/248 (6%)
Query: 18 IDPTRKTRPPIF---SGSDVDWL-----RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFG 69
++ T K+R P S S V+ L R D R H+ R A GSA G
Sbjct: 6 VERTIKSRWPNLATTSASRVEILNDGGYRSDGRRQHELRDFNIDLAVRGQADGSAMVSQG 65
Query: 70 NTKVIVSVFGPRESKK-AMMYSNIGRLNCNVSYTTFATPVRGQGSDHK----DFSSMLHK 124
T+V+V+VFGPRE++ N +N V+ +F+T R + S + +F++ +
Sbjct: 66 LTQVLVTVFGPREARSPTQRIHNRAFINVEVNIASFSTSERRKRSRNDKRVLEFAAAIKS 125
Query: 125 ALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCL 184
E I +P++ +D+F VL+ G L I+ ++AL GI +YD V +VS
Sbjct: 126 TFEPVIQTHLYPRSEIDIFVQVLQQDGGLLSASINATTLALITGGISLYDYVCAVSAGVH 185
Query: 185 GKNLLID-PVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKL 243
+ L+D LEE L A MP +VT +T+ F E +L DA +
Sbjct: 186 ATHPLLDLNTLEENDVP--HLTTAVMPRTRKVTLVTLETRLHADRFEEIFRLACDAGEVV 243
Query: 244 GKIMRSCL 251
K MR +
Sbjct: 244 HKEMRRAI 251
>gi|122920908|pdb|2NN6|B Chain B, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 249
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 105/229 (45%), Gaps = 12/229 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + +A + +
Sbjct: 17 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 76
Query: 96 NCNVSYTTFATPVRGQGSDHKDFSS-----MLHKALEGAIILETFPKTTVDVFALVLESG 150
NC S TF+T R + H D S L + E AI+ + P++ +D++ VL++
Sbjct: 77 NCQYSSATFSTGERKR-RPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQAD 135
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
G ++ A++A+ DAGI M D V + S + L D EE+ L +A +P
Sbjct: 136 GGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLP 195
Query: 211 SRYEVTQLTVTGEWSTPHFNE----AMQLCLDASAKLGKIMRSCLKEAA 255
+ ++ L + H A Q D L +++R ++EA+
Sbjct: 196 ASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQHVREAS 244
>gi|170070082|ref|XP_001869459.1| exosome complex exonuclease RRP41 [Culex quinquefasciatus]
gi|167866003|gb|EDS29386.1| exosome complex exonuclease RRP41 [Culex quinquefasciatus]
Length = 245
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 112/223 (50%), Gaps = 4/223 (1%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
+ LR D R ++ R + G + GSAY E GNTKV+ +V+GP ++
Sbjct: 7 EGLRLDGRRSNELRRIQCKLGVFSQPDGSAYVEQGNTKVLAAVYGPHQAPAKKSNHEECV 66
Query: 95 LNCNVSYTTFATPVRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+NC S TF+T R + D K + + L +AL AI + +PK+ +DV+ VL +
Sbjct: 67 VNCQYSMATFSTGERKKRPRGDRKSQEMTIHLQQALSAAIKTDLYPKSQIDVYIEVLMAD 126
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
G + ++ A++AL DAGI + + V + + S GK L+D EE +L +A +P
Sbjct: 127 GGNYCASVNAATLALIDAGICLKEYVCACTASLAGKVPLMDVSNLEEMSGGPTLTVASLP 186
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
+ ++ + ++ + H ++ L ++ KI+ +++
Sbjct: 187 NSGKIAFMEMSQRFHLDHLPNVLETALQGCREVQKIIDQAVRD 229
>gi|55644221|ref|XP_523406.1| PREDICTED: exosome complex component MTR3 [Pan troglodytes]
gi|410209962|gb|JAA02200.1| exosome component 6 [Pan troglodytes]
gi|410209964|gb|JAA02201.1| exosome component 6 [Pan troglodytes]
gi|410268124|gb|JAA22028.1| exosome component 6 [Pan troglodytes]
gi|410289018|gb|JAA23109.1| exosome component 6 [Pan troglodytes]
Length = 272
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 123/248 (49%), Gaps = 20/248 (8%)
Query: 23 KTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE 82
+++PP +D + P +R + RP + R G ++ A GSAY E G TKV+ +V GPR+
Sbjct: 13 ESQPPQLYAADEEEA-PGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQ 71
Query: 83 SKKAMMYSNI------------GRLNCNVSYTTFATPVRGQ---GSDHKDFSSMLHKALE 127
++ S GRL C+ FA R G + ++ + L +ALE
Sbjct: 72 AEGGERGSGPAGAGGEAPAALRGRLLCDFRRAPFAGRRRRAPPGGCEERELALALQEALE 131
Query: 128 GAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCL--- 184
A+ L +P+ ++V AL+LE GGS L ++ A++ALADAG+ MYDLV +S
Sbjct: 132 PAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSLAPGP 191
Query: 185 GKNLLIDPVLEEESYQDGSLMIACMPSRYEVT-QLTVTGEWSTPHFNEAMQLCLDASAKL 243
L+DP EE L +A MP +V L T + EA++L L+ +L
Sbjct: 192 APTWLLDPTRLEEERAAAGLTVALMPVLNQVAGLLGSGEGGLTESWAEAVRLGLEGCQRL 251
Query: 244 GKIMRSCL 251
+++ L
Sbjct: 252 YPVLQQSL 259
>gi|326436033|gb|EGD81603.1| hypothetical protein PTSG_02318 [Salpingoeca sp. ATCC 50818]
Length = 221
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 83/140 (59%), Gaps = 5/140 (3%)
Query: 46 QCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFA 105
Q R F G V+ A GSA+ E GNTKV+ + +GP + + + L+C+V ++ F+
Sbjct: 37 QPRSVFAEVGVVSQAKGSAFFEIGNTKVVAACYGPLSTSRRQGFQETCILDCDVKFSPFS 96
Query: 106 TPVRGQGSDH----KDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCA 161
V+ Q + ++ S +L +L+ + + +PK+ + V+A VL+ G+ VI+ A
Sbjct: 97 G-VKHQQTKQTALERELSQLLESSLKPCVCVSKYPKSVIQVYATVLQDDGAAFSAVINAA 155
Query: 162 SVALADAGIMMYDLVASVSV 181
S+ALA+AGI M+DL+A+ SV
Sbjct: 156 SMALANAGIEMFDLLAAASV 175
>gi|9506689|ref|NP_061910.1| exosome complex component RRP41 [Homo sapiens]
gi|386780762|ref|NP_001248033.1| exosome component 4 [Macaca mulatta]
gi|114622153|ref|XP_001154573.1| PREDICTED: exosome complex component RRP41 isoform 1 [Pan
troglodytes]
gi|332264376|ref|XP_003281213.1| PREDICTED: exosome complex component RRP41 isoform 1 [Nomascus
leucogenys]
gi|397497366|ref|XP_003819483.1| PREDICTED: exosome complex component RRP41 [Pan paniscus]
gi|402912472|ref|XP_003918788.1| PREDICTED: exosome complex component RRP41 [Papio anubis]
gi|410042315|ref|XP_003951415.1| PREDICTED: exosome complex component RRP41 isoform 2 [Pan
troglodytes]
gi|410042317|ref|XP_003951416.1| PREDICTED: exosome complex component RRP41 isoform 3 [Pan
troglodytes]
gi|426360983|ref|XP_004047707.1| PREDICTED: exosome complex component RRP41-like [Gorilla gorilla
gorilla]
gi|426360993|ref|XP_004047712.1| PREDICTED: exosome complex component RRP41 [Gorilla gorilla
gorilla]
gi|441648333|ref|XP_004090877.1| PREDICTED: exosome complex component RRP41 isoform 2 [Nomascus
leucogenys]
gi|14285756|sp|Q9NPD3.3|EXOS4_HUMAN RecName: Full=Exosome complex component RRP41; AltName:
Full=Exosome component 4; AltName: Full=Ribosomal
RNA-processing protein 41; AltName: Full=p12A
gi|8927590|gb|AAF82134.1|AF281133_1 exosome component Rrp41 [Homo sapiens]
gi|7020801|dbj|BAA91279.1| unnamed protein product [Homo sapiens]
gi|12803867|gb|AAH02777.1| Exosome component 4 [Homo sapiens]
gi|119602572|gb|EAW82166.1| exosome component 4 [Homo sapiens]
gi|261860724|dbj|BAI46884.1| exosome component 4 [synthetic construct]
gi|325464127|gb|ADZ15834.1| exosome component 4 [synthetic construct]
gi|380785703|gb|AFE64727.1| exosome complex component RRP41 [Macaca mulatta]
gi|383414799|gb|AFH30613.1| exosome complex component RRP41 [Macaca mulatta]
gi|384943268|gb|AFI35239.1| exosome complex component RRP41 [Macaca mulatta]
gi|410250230|gb|JAA13082.1| exosome component 4 [Pan troglodytes]
gi|410290294|gb|JAA23747.1| exosome component 4 [Pan troglodytes]
gi|410331253|gb|JAA34573.1| exosome component 4 [Pan troglodytes]
Length = 245
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 105/229 (45%), Gaps = 12/229 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + +A + +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 96 NCNVSYTTFATPVRGQGSDHKDFSS-----MLHKALEGAIILETFPKTTVDVFALVLESG 150
NC S TF+T R + H D S L + E AI+ + P++ +D++ VL++
Sbjct: 73 NCQYSSATFSTGERKR-RPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQAD 131
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
G ++ A++A+ DAGI M D V + S + L D EE+ L +A +P
Sbjct: 132 GGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLP 191
Query: 211 SRYEVTQLTVTGEWSTPHFNE----AMQLCLDASAKLGKIMRSCLKEAA 255
+ ++ L + H A Q D L +++R ++EA+
Sbjct: 192 ASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQHVREAS 240
>gi|336477103|ref|YP_004616244.1| exosome complex exonuclease 1 [Methanosalsum zhilinae DSM 4017]
gi|335930484|gb|AEH61025.1| exosome complex exonuclease 1 [Methanosalsum zhilinae DSM 4017]
Length = 299
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 113/223 (50%), Gaps = 5/223 (2%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE---SKKAMMY 89
D + LR D R + RP G ++ A GS Y E+G KV+ +V+GPR +K +
Sbjct: 10 DDNGLRLDGRRVDEIRPMKIDIGVLSRADGSCYLEWGKNKVLAAVYGPRTLHPRRKQIPD 69
Query: 90 SNIGRLNCNVSYTTFATPVR-GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ + R N++ + +R G + S + +A E ++ + +P T +D+F +++
Sbjct: 70 AALIRYRYNMASFSVEDRIRPGPSRRSVEISKVSAEAFEPVVLTKFYPNTVIDIFTEIIQ 129
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ I+ AS+ALADAGI M LV++ +V + L++D +E+++ L +A
Sbjct: 130 ADAGTRTAAINAASIALADAGIPMKGLVSACAVGKVDGQLVLDLNKDEDNFGAADLPVA- 188
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
M E+T + + G + F EA+++ ++ +I + L
Sbjct: 189 MTQDGEITLIQMDGNLTQEEFKEAIEMVRAGCMEILEIQKKAL 231
>gi|296231558|ref|XP_002761078.1| PREDICTED: exosome complex component MTR3 [Callithrix jacchus]
Length = 271
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 112/225 (49%), Gaps = 19/225 (8%)
Query: 46 QCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI------------G 93
+ RP + R G ++ A GSAY E G TKV+ +V GPR+++ G
Sbjct: 35 RLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPAALRG 94
Query: 94 RLNCNVSYTTFATPVRGQ---GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
RL C+ FA R G + ++ + L +ALE A+ L +P+ ++V AL+LE G
Sbjct: 95 RLLCDFRRAPFAGRRRRAPQGGGEERELALALQEALEPAVRLGRYPRAQLEVSALLLEDG 154
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCL---GKNLLIDPVLEEESYQDGSLMIA 207
GS L ++ A++ALADAG+ MYDLV +S L+DP EE L +A
Sbjct: 155 GSALAAALTAAALALADAGVEMYDLVVGCGLSLAPGPASTWLLDPTRLEEERAAAGLTVA 214
Query: 208 CMPSRYEVT-QLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
MP +V L T + EA++L L+ +L +++ CL
Sbjct: 215 LMPVLNQVAGLLGSGEGGLTESWAEAVRLGLEGCQRLYPVLQQCL 259
>gi|57095694|ref|XP_539207.1| PREDICTED: exosome complex component RRP41 isoform 1 [Canis lupus
familiaris]
Length = 245
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 106/228 (46%), Gaps = 10/228 (4%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + +A + +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 96 NCNVSYTTFATPVRGQ--GSDHKDFSSMLH--KALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K LH + E AI+ + P++ +D++ VL++ G
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLHLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS 211
++ A++A+ DAGI M D V + S + L D EE+ L +A +P+
Sbjct: 133 GTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDNTALADLSHVEEAAGGPQLALALLPA 192
Query: 212 RYEVTQLTVTGEWSTPHFNEAMQLCL----DASAKLGKIMRSCLKEAA 255
++ L + H + ++ D L +++R ++EA+
Sbjct: 193 SGQIALLEMDARLHEDHLEQVLEAAARAARDVHTVLDRVVRQHVREAS 240
>gi|198427597|ref|XP_002131069.1| PREDICTED: similar to LOC495942 protein [Ciona intestinalis]
Length = 247
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 108/233 (46%), Gaps = 17/233 (7%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS---NIGR 94
R D R + R G A GSAY E GNTKV+ +++GP E+ M +
Sbjct: 13 RFDGRKPSELRRVRCNMGVFTQADGSAYIEQGNTKVLAAIYGPHEASNNMRSRVCLDKCF 72
Query: 95 LNCNVSYTTFATPVRGQGS----DHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+NC S F++ R + S KD S+ + + E A+ + +P++ +D++ VL S
Sbjct: 73 INCEFSQAMFSSAERKKRSRGDRKGKDMSAHIKQTFEAAVRTQLYPRSQIDIYLQVLHSD 132
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
GS ++ A++AL DAGI M D V + S S + LID EE A MP
Sbjct: 133 GSLYCACVNAATLALIDAGIAMKDYVCACSASLTKETSLIDINHVEELAGCAEFSAAIMP 192
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQL-------CLDASAKLGKIMRSCLKEAAS 256
++ + G H +E QL C D A + + +RS L+E AS
Sbjct: 193 KLDQIIYSELNGRI---HQDELGQLVDAVTNGCKDIFAVIDRFVRSRLEETAS 242
>gi|330508837|ref|YP_004385265.1| exosome complex exonuclease 1 [Methanosaeta concilii GP6]
gi|328929645|gb|AEB69447.1| exosome complex exonuclease 1 [Methanosaeta concilii GP6]
Length = 253
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 114/222 (51%), Gaps = 7/222 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
D LR D R + RP G + A GS Y E G KVI +V+GPRE + + R
Sbjct: 14 DGLRLDGRRADELRPVKIEVGILARADGSCYIEMGGNKVIAAVYGPREVHPRHL-QEVTR 72
Query: 95 LNCNVSYT--TFATPVRGQ-GSDHKDF--SSMLHKALEGAIILETFPKTTVDVFALVLES 149
Y +F+ R + G D + + S + +ALE I+ FP++ +DVF VL++
Sbjct: 73 AIVRYRYNMASFSVEERKRPGPDRRSYELSKVSREALEPVILTSFFPRSVIDVFVEVLQA 132
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACM 209
I+ A+VALADAGI M +++S + +G +++DP+ EE+++ L IA
Sbjct: 133 DAGTRTAGINAAAVALADAGIPMKSMISSCAAGKVGDTIVLDPMKEEDNFGQADLPIAMT 192
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
P+ ++T + + G + F +A+ + + + + ++ R L
Sbjct: 193 PN-GDITLMQMDGNLTPDEFGQAVTMAMKGAKDIYELQRRAL 233
>gi|328769717|gb|EGF79760.1| hypothetical protein BATDEDRAFT_19845 [Batrachochytrium
dendrobatidis JAM81]
Length = 253
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 110/223 (49%), Gaps = 5/223 (2%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRL 95
LR D R + R + G +A GSAY E GNTK + +V+GP+ESK ++ + +
Sbjct: 24 LRVDGRRPPELRRLLTKVGLFTNADGSAYIELGNTKCVAAVYGPKESKIQSAQLHDRAVI 83
Query: 96 NCNVSYTTFATPVRG--QGSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
N + +F++ R D + + +S++ + E ++ TFP++ +D++ +L+ G
Sbjct: 84 NVEYNVASFSSGERKLKMKRDKRMLEIASIIKRTFEPVVMTSTFPRSEIDIYVQILQLDG 143
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS 211
L I+ +A+ DAGI M D V + S + L+D EES + L A +P
Sbjct: 144 GALHAAINATCLAMIDAGIPMSDYVIACSAGFSNGSALLDLNYIEESAELPVLTAALLPK 203
Query: 212 RYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEA 254
++T L++ HF + + L + L + + +++A
Sbjct: 204 SGKLTMLSMESRLHLNHFQDVLNLATEGCNTLAESLNETVRKA 246
>gi|355698284|gb|EHH28832.1| hypothetical protein EGK_19355 [Macaca mulatta]
Length = 247
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 105/231 (45%), Gaps = 14/231 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK----KAMMYSNIG 93
R D R + R R G A GSAY E GNTK + V+GP E+ +A +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEASIRGSRARALPDRA 72
Query: 94 RLNCNVSYTTFATPVRGQGSDHKDFSS-----MLHKALEGAIILETFPKTTVDVFALVLE 148
+NC S TF+T R + H D S L + E AI+ + P++ +D++ VL+
Sbjct: 73 LVNCQYSSATFSTGERKR-RPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQ 131
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ G ++ A++A+ DAGI M D V + S + L D EE+ L +A
Sbjct: 132 ADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALAL 191
Query: 209 MPSRYEVTQLTVTGEWSTPHFNE----AMQLCLDASAKLGKIMRSCLKEAA 255
+P+ ++ L + H A Q D L +++R ++EA+
Sbjct: 192 LPASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQHVREAS 242
>gi|426235362|ref|XP_004011653.1| PREDICTED: exosome complex component RRP41 isoform 1 [Ovis aries]
gi|426235364|ref|XP_004011654.1| PREDICTED: exosome complex component RRP41 isoform 2 [Ovis aries]
Length = 245
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 10/228 (4%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + +A + +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 96 NCNVSYTTFATPVRGQ--GSDHKDFSSMLH--KALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K LH + E AI+ + P++ +D++ VL++ G
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLHLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS 211
++ A++A+ DAGI M D V + S + L D EE+ L +A +P+
Sbjct: 133 GTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPA 192
Query: 212 RYEVTQLTVTGEWSTPHFNEAMQLCLDASAK----LGKIMRSCLKEAA 255
++ L + H + ++ AS L +++R ++EA+
Sbjct: 193 SGQIALLEMDARLHEDHLEQVLEAAARASRDVHTVLDRVVRQHVQEAS 240
>gi|242091341|ref|XP_002441503.1| hypothetical protein SORBIDRAFT_09g028170 [Sorghum bicolor]
gi|241946788|gb|EES19933.1| hypothetical protein SORBIDRAFT_09g028170 [Sorghum bicolor]
Length = 242
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 108/231 (46%), Gaps = 11/231 (4%)
Query: 29 FSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE--SKKA 86
+G VD RP ++ R G V A GSA E GNT+VI +V+GPRE +K
Sbjct: 7 LTGFRVDGRRP-----NEMRQLKGEVGIVARADGSALFEMGNTRVIAAVYGPREVQNKGQ 61
Query: 87 MMYSNIGRLNCNVSYTTFATPVRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDV 142
+ SN + C F+T R + D + + S ++ + +E +I+ P + +D+
Sbjct: 62 QVNSNEALVRCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPHSQIDI 121
Query: 143 FALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDG 202
+ VL++ G I+ A++ALADAGI M D+V S S L L+D E+S
Sbjct: 122 YVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLCSTPLLDLNYLEDSAGGS 181
Query: 203 SLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
+ + + +VT L + + F M L ++ + +R L E
Sbjct: 182 DVTVGILAKMDKVTLLQMDAKLPMDTFENVMGLAIEGCKAIASYIREVLLE 232
>gi|357132600|ref|XP_003567917.1| PREDICTED: exosome complex component RRP41-like [Brachypodium
distachyon]
Length = 242
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 110/231 (47%), Gaps = 11/231 (4%)
Query: 29 FSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE--SKKA 86
+G VD RP ++ R G V+ A GSA E GNT+VI +V+GPRE ++
Sbjct: 7 LTGFRVDGRRP-----NEMRQLKGEVGVVSRADGSALFEMGNTRVIAAVYGPREVQNRSQ 61
Query: 87 MMYSNIGRLNCNVSYTTFATPVRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDV 142
+ S + C F+T R + D + + S ++ + +E +I+ P + +D+
Sbjct: 62 QVNSKEALVRCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPHSQIDI 121
Query: 143 FALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDG 202
F VL++ G I+ A++ALADAGI M D+V S S L + L+D E+S
Sbjct: 122 FVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLCSSPLLDLNYIEDSAGGP 181
Query: 203 SLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
+ + + +VT L + + F M+L ++ + +R L E
Sbjct: 182 DVTVGILAKMDKVTLLQMDAKLPMDTFETVMELAIEGCKAIATYIREILLE 232
>gi|355780009|gb|EHH64485.1| hypothetical protein EGM_17708 [Macaca fascicularis]
Length = 247
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 105/231 (45%), Gaps = 14/231 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES----KKAMMYSNIG 93
R D R + R R G A GSAY E GNTK + V+GP E+ +A +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEAXIRGSRARALPDRA 72
Query: 94 RLNCNVSYTTFATPVRGQGSDHKDFSS-----MLHKALEGAIILETFPKTTVDVFALVLE 148
+NC S TF+T R + H D S L + E AI+ + P++ +D++ VL+
Sbjct: 73 LVNCQYSSATFSTGERKR-RPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQ 131
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ G ++ A++A+ DAGI M D V + S + L D EE+ L +A
Sbjct: 132 ADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALAL 191
Query: 209 MPSRYEVTQLTVTGEWSTPHFNE----AMQLCLDASAKLGKIMRSCLKEAA 255
+P+ ++ L + H A Q D L +++R ++EA+
Sbjct: 192 LPASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQHVREAS 242
>gi|75045923|sp|Q7YRA3.3|EXOS4_BOVIN RecName: Full=Exosome complex component RRP41; AltName:
Full=Exosome component 4; AltName: Full=Ribosomal
RNA-processing protein 41
gi|33411774|emb|CAD58792.1| putative exosome complex exonuclease RRP41 [Bos taurus]
gi|296480766|tpg|DAA22881.1| TPA: exosome complex exonuclease RRP41 [Bos taurus]
Length = 245
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 107/229 (46%), Gaps = 12/229 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + +A + +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 96 NCNVSYTTFATPVRGQGSDHKDFSS-----MLHKALEGAIILETFPKTTVDVFALVLESG 150
NC S TF+T R + H D S L + E AI+ + P++ +D++ VL++
Sbjct: 73 NCQYSSATFSTGERKR-RPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQAD 131
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
G ++ A++A+ DAGI M D V + S + L D EE+ L +A +P
Sbjct: 132 GGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLP 191
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAK----LGKIMRSCLKEAA 255
+ ++ L + H + ++ AS L +++R ++EA+
Sbjct: 192 ASGQIALLEMDARLHEDHLEQVLEAAARASRDVHTVLDRVVRQHVQEAS 240
>gi|221504332|gb|EEE30007.1| 3' exoribonuclease, putative [Toxoplasma gondii VEG]
Length = 303
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 119/239 (49%), Gaps = 17/239 (7%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R F + R +T ++ +A+GSA+ G TK+ +V+GPR + K + G +N
Sbjct: 47 RHDGRRFEEMRAMCMQTHSLAAAAGSAFVSVGKTKLNCAVYGPRPNMK-HASQDRGSINL 105
Query: 98 NVSYTTFATPVRGQGS--DHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLP 155
+ FAT + S D +++LH+AL + L+ + K+T+ V LVLE G +
Sbjct: 106 EFRFAPFATTGKDACSERDTAHLTTLLHQALNAVVRLDLYAKSTIAVSVLVLEDDGGLIS 165
Query: 156 VVISCASVALADAGIMMYDLV--ASVSVSCLGK-------NLLIDPVLEE-ESYQDGSLM 205
++C +ALADAGI M D+V AS V +G +L+DP EE ++ D +
Sbjct: 166 AALTCIGLALADAGIEMLDVVTGASACVFSVGHPDSPPRTCVLLDPDAEERRAFADKNCT 225
Query: 206 ---IACMPSRYEVTQLTVTGE-WSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDEQE 260
+ P+ V + +G +T + ++LC A + +RSCL+ + QE
Sbjct: 226 FVDLGYCPALASVCFIRASGTLLATESGEQMLRLCEAACYAVADEVRSCLRRSFCLRQE 284
>gi|395748070|ref|XP_003778708.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex component MTR3
[Pongo abelii]
Length = 272
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 122/248 (49%), Gaps = 20/248 (8%)
Query: 23 KTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE 82
+++PP +D + P +R + RP + R G ++ A GSAY E G TKV+ +V GPR+
Sbjct: 13 ESQPPQLYAADEEEA-PGARDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQ 71
Query: 83 SKKAMMYSNI------------GRLNCNVSYTTFATPVRGQ---GSDHKDFSSMLHKALE 127
++ GRL C+ FA R G + ++ + L +ALE
Sbjct: 72 AEGGERGGGPAGAGGEAPAALRGRLLCDXRRAPFAGRRRRAPPGGCEERELALALQEALE 131
Query: 128 GAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCL--- 184
A+ L +P+ ++V AL+LE GGS L ++ A++ALADAG+ MYDLV +S
Sbjct: 132 PAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSLAPGP 191
Query: 185 GKNLLIDPVLEEESYQDGSLMIACMPSRYEVT-QLTVTGEWSTPHFNEAMQLCLDASAKL 243
L+DP EE L +A MP +V L T + EA++L L+ +L
Sbjct: 192 APTWLLDPTRLEEERAAAGLTVALMPVLNQVAGLLGSGEGGLTESWAEAVRLGLEGCQRL 251
Query: 244 GKIMRSCL 251
+++ L
Sbjct: 252 YPVLQQSL 259
>gi|270010551|gb|EFA06999.1| hypothetical protein TcasGA2_TC009968 [Tribolium castaneum]
Length = 251
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 116/231 (50%), Gaps = 11/231 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGR 94
LR D R + R + G GSAY E G TKV+ +V+GP + + ++ +
Sbjct: 13 LRQDGRRADELRRIRCKLGVFTEPDGSAYLEQGLTKVLAAVYGPHQVRGSRSKAQHDSAV 72
Query: 95 LNCNVSYTTFATPVRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+NC S F+T R + D K + S L +AL AI +E +P T +DV+ VL +
Sbjct: 73 VNCQFSMAVFSTGERKKRPRGDRKSTEISIHLRQALTAAIKVELYPWTQIDVYVEVLHAD 132
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNL-LIDPVLEEESYQDGSLMIACM 209
G P ++ A++AL DAGI + + V + + S ++ L+D +EE +L +A +
Sbjct: 133 GGIYPACVNAATLALIDAGIPLKEYVCACTASLANNDVPLLDVSHQEEIIGGPTLTVAAL 192
Query: 210 PSRYEVTQLTVTGEWSTPH----FNEAMQLCLDASAKLGKIMRSCLKEAAS 256
P ++ + ++ + H ++A+Q C D + L + ++S +++ S
Sbjct: 193 PMSGKIVLMEMSQRFHVDHLQKVLDKALQGCKDIKSILDEAVKSHIQDVGS 243
>gi|195591661|ref|XP_002085557.1| GD12240 [Drosophila simulans]
gi|194197566|gb|EDX11142.1| GD12240 [Drosophila simulans]
Length = 327
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 108/235 (45%), Gaps = 22/235 (9%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS-NIGRLNCNVSYTTFAT 106
R F R G + + GSAY E+GNTKV+ V P+E +A N+G LNC V++ F T
Sbjct: 48 RNTFIRAGVLTTVRGSAYMEYGNTKVLAIVAPPKELIRASARRMNMGVLNCYVNFAAFGT 107
Query: 107 -PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVAL 165
+ + SSML KALE + F +D+ L+L+ G L I+C VAL
Sbjct: 108 GDLESVPERERHLSSMLTKALEPVVCRTEFLNFQLDIRVLILDDDGCLLSTAINCCGVAL 167
Query: 166 ADAGIMMYDLVASVSVSCLGKNLLIDP--VLEE------------------ESYQDGSLM 205
+ GI YDL+ + + ++ ++P +EE + + G ++
Sbjct: 168 VECGISTYDLITASTACIYRDHVFLNPSAKIEELLWKHRSNSGTDSTTSPSSAQEHGLII 227
Query: 206 IACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDEQE 260
A M + ++ Q G S + + + LD + L ++++ L + ++ E
Sbjct: 228 TASMDTFEQIAQCQQCGYLSPATYVKLLDYTLDMNKSLRELVKGVLTKRVKEQHE 282
>gi|17402904|ref|NP_478126.1| exosome complex component MTR3 [Homo sapiens]
gi|74736141|sp|Q5RKV6.1|EXOS6_HUMAN RecName: Full=Exosome complex component MTR3; AltName: Full=Exosome
component 6; AltName: Full=mRNA transport regulator 3
homolog; Short=hMtr3; AltName: Full=p11
gi|122920912|pdb|2NN6|F Chain F, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
gi|55930874|gb|AAH52252.1| Exosome component 6 [Homo sapiens]
gi|119572226|gb|EAW51841.1| exosome component 6 [Homo sapiens]
Length = 272
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 122/248 (49%), Gaps = 20/248 (8%)
Query: 23 KTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE 82
+++PP +D + P +R + RP + R G ++ A GSAY E G TKV+ +V GPR+
Sbjct: 13 ESQPPQLYAADEEEA-PGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQ 71
Query: 83 SKKAMMYSNI------------GRLNCNVSYTTFATPVRGQ---GSDHKDFSSMLHKALE 127
++ GRL C+ FA R G + ++ + L +ALE
Sbjct: 72 AEGGERGGGPAGAGGEAPAALRGRLLCDFRRAPFAGRRRRAPPGGCEERELALALQEALE 131
Query: 128 GAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCL--- 184
A+ L +P+ ++V AL+LE GGS L ++ A++ALADAG+ MYDLV +S
Sbjct: 132 PAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSLAPGP 191
Query: 185 GKNLLIDPVLEEESYQDGSLMIACMPSRYEVT-QLTVTGEWSTPHFNEAMQLCLDASAKL 243
L+DP EE L +A MP +V L T + EA++L L+ +L
Sbjct: 192 APTWLLDPTRLEEERAAAGLTVALMPVLNQVAGLLGSGEGGLTESWAEAVRLGLEGCQRL 251
Query: 244 GKIMRSCL 251
+++ L
Sbjct: 252 YPVLQQSL 259
>gi|332017939|gb|EGI58588.1| Exosome complex exonuclease RRP41 [Acromyrmex echinatior]
Length = 272
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 96/189 (50%), Gaps = 15/189 (7%)
Query: 32 SDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK-AMMYS 90
+D LR D R + R R G A GSAY E GNTKV+ +V+GPR+S+ A S
Sbjct: 7 NDQGGLRIDGRRALELRQIRMRMGVFGQADGSAYIEHGNTKVLAAVYGPRQSRSSASRNS 66
Query: 91 NIGRLNCNVSYTTFA-----TPVRGQGS-DHKDFSSMLHKALEGAIILETFPKTTVDVFA 144
+NC S F+ R +G ++ S+ L A+E I LE +P++ +DVF
Sbjct: 67 TKAIINCQYSMAVFSFTSGERKRRPRGDWKSQERSAQLRHAMEAIIHLELYPRSQIDVFV 126
Query: 145 LVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSL 204
VL+ GSD ++ A++AL DAGI + + SV+ + K P +E+E D +L
Sbjct: 127 EVLQVDGSDYCASVNAATLALIDAGIPIKNYAIGCSVTLVNK-----PSVEDE---DKTL 178
Query: 205 MIACMPSRY 213
+ + Y
Sbjct: 179 ATGVLDANY 187
>gi|218201746|gb|EEC84173.1| hypothetical protein OsI_30553 [Oryza sativa Indica Group]
gi|222641142|gb|EEE69274.1| hypothetical protein OsJ_28540 [Oryza sativa Japonica Group]
Length = 242
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 108/231 (46%), Gaps = 11/231 (4%)
Query: 29 FSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE--SKKA 86
+G VD RP ++ R G V A GSA E GNT+VI +V+GPRE +K
Sbjct: 7 LTGFRVDGRRP-----NEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKGQ 61
Query: 87 MMYSNIGRLNCNVSYTTFATPVRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDV 142
+ S + C F+T R + D + + S ++ + +E +I+ P++ +D+
Sbjct: 62 QVNSKDALVRCEYRMADFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPRSQIDI 121
Query: 143 FALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDG 202
F VL++ G I+ A++ALADAGI M D+V S S L L+D E+S
Sbjct: 122 FVQVLQADGGTRAACINAATLALADAGIPMRDIVTSCSAGYLCSTPLLDLNYIEDSAGGP 181
Query: 203 SLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
+ + + +VT L + + F M L ++ + +R L E
Sbjct: 182 DVTVGFLTKMDKVTLLQMDAKLPMDTFETVMDLAIEGCKAIANYIREVLLE 232
>gi|340521609|gb|EGR51843.1| hypothetical protein TRIREDRAFT_55589 [Trichoderma reesei QM6a]
Length = 286
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 124/276 (44%), Gaps = 36/276 (13%)
Query: 20 PTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEF--------GNT 71
P T PP++ ++ D R RP + +TG SASGSAY E
Sbjct: 10 PGGSTLPPVYDETESDAASLRQRAPDAIRPLYLKTGVTPSASGSAYLEIEPREGKHGSGM 69
Query: 72 KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG---QGSDHKDFSSMLHKALEG 128
K+ +V GPR ++ +S L+ +V + FAT R + S KD S++L AL G
Sbjct: 70 KLACTVHGPRSLPRSAPFSPYMVLSTHVKFAPFATKQRRGYLRDSSEKDLSTLLETALRG 129
Query: 129 AIILETFPKTTVDVFALVLESGGSDLPVV----------------ISCASVALADAGIMM 172
A+I + +PK+ VDV ++E + V I+ AS A+ADAGI
Sbjct: 130 AMIADRWPKSGVDVVVTIIEGESTRQDAVERRVEEWDAMNVLGGCITVASAAIADAGIDC 189
Query: 173 YDLVA-SVSVSCLGKN-----LLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEW-- 224
D V+ V+ KN +++DPV E + +A +P+R EVT L G+
Sbjct: 190 VDTVSGGVAALVADKNGGELSMVLDPVALEHESVLAACCVAYLPNRDEVTNLWFKGQLPS 249
Query: 225 -STPHFNEAMQLCLDASAKLGKIMRSCLKEAASDEQ 259
T ++ + + AS + ++ + L E + Q
Sbjct: 250 TGTHNYQTLVAKAVQASRGVHGLISASLSEVIENSQ 285
>gi|325189047|emb|CCA23575.1| exosome complex exonuclease RRP41like protein putati [Albugo
laibachii Nc14]
Length = 261
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 108/229 (47%), Gaps = 13/229 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE--------SKKAMM 88
LR D R + R R G + A GSAY E GNTKV+V V+GPRE +K A
Sbjct: 18 LRLDGRREAETRRVRARLGVFHRADGSAYIEQGNTKVLVVVYGPREVDGTTLKNAKGAAS 77
Query: 89 YSNIGRLNCNVSYTTFATPVRG---QGSDHKD--FSSMLHKALEGAIILETFPKTTVDVF 143
++C + +FAT R SD K+ SS + + E I +P++ + ++
Sbjct: 78 LVKKAIVHCECTQASFATSDRKVSRNASDRKNVEMSSAIKQIFESCIFTNLYPQSQISIY 137
Query: 144 ALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGS 203
VL++ G +L I+ S+AL DAGI + D V + + + + L D E++ +
Sbjct: 138 PQVLQADGGELAASINATSLALMDAGIALNDFVVASTAGFVQQKSLCDLNAFEQAARGPQ 197
Query: 204 LMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
+ +A P V L + + + F M + ++ ++G ++ ++
Sbjct: 198 ITVAINPRSRHVNYLKMEAKLALEVFESVMGMAINGCDRIGDSLQQVVR 246
>gi|395860170|ref|XP_003802388.1| PREDICTED: exosome complex component RRP41 [Otolemur garnettii]
Length = 245
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 104/229 (45%), Gaps = 12/229 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + +A + +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 96 NCNVSYTTFATPVRGQGSDHKDFSS-----MLHKALEGAIILETFPKTTVDVFALVLESG 150
NC S TF+T R + H D S L + E AI+ + P++ +D++ VL++
Sbjct: 73 NCQYSSATFSTGERKR-RPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQAD 131
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
G ++ A++A+ DAGI M D V + S + L D EE+ L +A +P
Sbjct: 132 GGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLP 191
Query: 211 SRYEVTQLTVTGEWSTPHFNE----AMQLCLDASAKLGKIMRSCLKEAA 255
+ ++ L + H A Q D L +++R + EA+
Sbjct: 192 ASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQHVHEAS 240
>gi|237841089|ref|XP_002369842.1| 3' exoribonuclease, putative [Toxoplasma gondii ME49]
gi|211967506|gb|EEB02702.1| 3' exoribonuclease, putative [Toxoplasma gondii ME49]
gi|221483644|gb|EEE21956.1| 3' exoribonuclease, putative [Toxoplasma gondii GT1]
Length = 303
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 119/239 (49%), Gaps = 17/239 (7%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R F + R +T ++ +A+GSA+ G TK+ +V+GPR + K + G +N
Sbjct: 47 RHDGRRFEEMRAMCMQTHSLAAAAGSAFVSVGKTKLNCAVYGPRPNMK-HASQDRGSINL 105
Query: 98 NVSYTTFATPVRGQGS--DHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLP 155
+ FAT + S D +++LH+AL + L+ + K+T+ V LVLE G +
Sbjct: 106 EFRFAPFATTGKDACSERDTAHLTTLLHQALNAVVRLDLYAKSTIAVSVLVLEDDGGLIS 165
Query: 156 VVISCASVALADAGIMMYDLV--ASVSVSCLGK-------NLLIDPVLEE-ESYQDGSLM 205
++C +ALADAGI M D+V AS V +G +L+DP EE ++ D +
Sbjct: 166 AALTCIGLALADAGIEMLDVVTGASACVFSVGHPDSPPRTCVLLDPDAEERRAFADKNCT 225
Query: 206 ---IACMPSRYEVTQLTVTGE-WSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDEQE 260
+ P+ V + +G +T + ++LC A + +RSCL+ + QE
Sbjct: 226 FVDLGYCPALASVCFIHASGTLLATESGEQMLRLCEAACYAVADEVRSCLRRSFCLRQE 284
>gi|281204136|gb|EFA78332.1| Exosome complex exonuclease rrp41 [Polysphondylium pallidum PN500]
Length = 248
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 114/230 (49%), Gaps = 8/230 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSNI 92
+ LR D R ++ R + G N A GSAY E GNTK+ V+V+GPRE S + M++
Sbjct: 10 EGLRIDGRRNNEIRRLNMKMGIFNRADGSAYYEQGNTKITVAVYGPREVASNQRMLHDR- 68
Query: 93 GRLNCNVSYTTFAT-----PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVL 147
+NC S F++ P R + +S++ +A E I + FP++ +D++ VL
Sbjct: 69 AIVNCEYSQAAFSSATDRKPTRKSDKQSYEIASLIKQAFESTIQITLFPRSQIDIYVQVL 128
Query: 148 ESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIA 207
++ G ++ A++A+ DAG+ M D + + S + + L+D EE L+++
Sbjct: 129 QADGGLKAAALNAATLAVIDAGLPMRDFICACSATFIEGVPLLDMNQMEERSGGADLLLS 188
Query: 208 CMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASD 257
P V L + + F ++L K+ ++++ +K ++D
Sbjct: 189 IQPQLGGVISLNMESKVPQDMFESVLELANLGCMKIFALLQTEVKRHSAD 238
>gi|198442889|ref|NP_001128332.1| exosome complex exonuclease RRP41 [Rattus norvegicus]
Length = 245
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 106/229 (46%), Gaps = 12/229 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + ++ + +
Sbjct: 13 RIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72
Query: 96 NCNVSYTTFATPVRGQGSDHKDFSS-----MLHKALEGAIILETFPKTTVDVFALVLESG 150
NC S TF+T R + H D S L + E AI+ + P++ +D++ VL++
Sbjct: 73 NCQYSSATFSTGERKR-RPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQAD 131
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
G ++ A++A+ DAGI M D V + S + L D EE+ L +A +P
Sbjct: 132 GGTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLP 191
Query: 211 SRYEVTQLTVTGEWSTPHFNE----AMQLCLDASAKLGKIMRSCLKEAA 255
+ ++ L + H + A Q D L +++R ++EA+
Sbjct: 192 ASGQIALLEMDSRLHEDHLEQVLEAAAQAARDVHTLLDRVVRQHVQEAS 240
>gi|348555838|ref|XP_003463730.1| PREDICTED: exosome complex component RRP41-like [Cavia porcellus]
Length = 245
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 106/229 (46%), Gaps = 12/229 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + ++ + +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72
Query: 96 NCNVSYTTFATPVRGQGSDHKDFSS-----MLHKALEGAIILETFPKTTVDVFALVLESG 150
NC S TF+T R + + H D S L + E AI+ + P++ +D++ VL++
Sbjct: 73 NCQYSSATFSTGERKRRA-HGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQAD 131
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
G ++ A++A+ DAGI M D V + S + L D EE+ L +A +P
Sbjct: 132 GGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLP 191
Query: 211 SRYEVTQLTVTGEWSTPH----FNEAMQLCLDASAKLGKIMRSCLKEAA 255
+ ++ L + H A Q D L +++R ++EA+
Sbjct: 192 ASGQIALLEMDARLHEDHLEWVLEAAAQAARDVHTLLDRVVRQHVREAS 240
>gi|410987869|ref|XP_004000217.1| PREDICTED: exosome complex component RRP41 [Felis catus]
Length = 245
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 106/229 (46%), Gaps = 12/229 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + +A + +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 96 NCNVSYTTFATPVRGQGSDHKDFSS-----MLHKALEGAIILETFPKTTVDVFALVLESG 150
NC S TF+T R + H D S L + E AI+ + P++ +D++ VL++
Sbjct: 73 NCQYSSATFSTGERKR-RPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQAD 131
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
G ++ A++A+ DAGI M D V + S + L D EE+ L +A +P
Sbjct: 132 GGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDSTALADLSHVEEAAGGPQLALALLP 191
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCL----DASAKLGKIMRSCLKEAA 255
+ ++ L + H + ++ D L +++R ++EA+
Sbjct: 192 ASGQLALLEMDARLHEDHLEQVLEAAARAARDVHTLLDRVVRQHVREAS 240
>gi|255644780|gb|ACU22892.1| unknown [Glycine max]
Length = 190
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 92/181 (50%), Gaps = 5/181 (2%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIG 93
+ LR D R + R GAV+ A GSA E GNTKVI +V+GPRE + S+
Sbjct: 7 EGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRNQQISSHA 66
Query: 94 RLNCNVSYTTFAT--PVRGQGSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ C S F+T +R D + + S ++ + +E I+ P++ +D++ VL++
Sbjct: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLLPRSQIDIYVQVLQA 126
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACM 209
G I+ A++ALADAGI M DLV S S L L+D E+S + + +
Sbjct: 127 DGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTLGIL 186
Query: 210 P 210
P
Sbjct: 187 P 187
>gi|171690730|ref|XP_001910290.1| hypothetical protein [Podospora anserina S mat+]
gi|170945313|emb|CAP71425.1| unnamed protein product [Podospora anserina S mat+]
Length = 287
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 134/294 (45%), Gaps = 45/294 (15%)
Query: 1 MAAKPSTTTTAKATYSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSA 60
MA + AT +P+ +P I +G D R + R F +TG SA
Sbjct: 1 MADRRRINGPPGATMAPVFEDDAGQPEIKNGKGRD------RAPNIIRKTFLKTGVTPSA 54
Query: 61 SGSAYAEF-GNTKVIVS-------VFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG-- 110
SGSAY EF G++K VS V GPR ++ +S L+ +V Y FAT R
Sbjct: 55 SGSAYLEFEGSSKSGVSGLKLSCTVHGPRSLPRSSPFSPHIVLSAHVKYAPFATKQRRGY 114
Query: 111 -QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE---------SGGSD------- 153
+ +D + L AL GAII + +PK+ VD+ ++E S G +
Sbjct: 115 LRDPSERDLGTHLETALRGAIIADRWPKSGVDIIISIIEGDQDRETSKSQGDETWDMMNV 174
Query: 154 LPVVISCASVALADAGIMMYDLVASVSVSCLGKN--------LLIDPVLEEESYQDGSLM 205
L I+ AS ALADAGI D VA V+ L ++ +++DP+ + G+
Sbjct: 175 LSGCITVASAALADAGIDCVDTVAG-GVAALVQDAGEDSTPRIVVDPIPSDHEKVLGACC 233
Query: 206 IACMPSRYEVTQLTVTGEWSTPH---FNEAMQLCLDASAKLGKIMRSCLKEAAS 256
+A +P+R EVT L G+ + + ++ + AS +++ CL EA S
Sbjct: 234 VAYLPTRDEVTNLWFKGDLPAADAGLYTQLVENGIQASRTANRVLVECLGEATS 287
>gi|118151420|ref|NP_001071554.1| exosome complex component RRP41 [Bos taurus]
gi|81673708|gb|AAI09820.1| Exosome component 4 [Bos taurus]
Length = 245
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 107/229 (46%), Gaps = 12/229 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + +A + +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRPLV 72
Query: 96 NCNVSYTTFATPVRGQGSDHKDFSS-----MLHKALEGAIILETFPKTTVDVFALVLESG 150
NC S TF+T R + H D S L + E AI+ + P++ +D++ VL++
Sbjct: 73 NCQYSSATFSTGERKR-RPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQAD 131
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
G ++ A++A+ DAGI M D V + S + L D EE+ L +A +P
Sbjct: 132 GGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLP 191
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAK----LGKIMRSCLKEAA 255
+ ++ L + H + ++ AS L +++R ++EA+
Sbjct: 192 ASGQIALLEMDARLHEDHLEQVLEAAARASRDVHTVLDRVVRQHVQEAS 240
>gi|358378117|gb|EHK15799.1| hypothetical protein TRIVIDRAFT_75047 [Trichoderma virens Gv29-8]
Length = 286
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 127/277 (45%), Gaps = 38/277 (13%)
Query: 20 PTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEF--------GNT 71
P + PP++ ++D + R RP + +TG SASGSAY E
Sbjct: 10 PGGSSLPPVYDDGELDAVSRRQRAPDAIRPLYLKTGVTPSASGSAYLEIEPREGEHGSGM 69
Query: 72 KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG---QGSDHKDFSSMLHKALEG 128
K+ +V GPR ++ +S L+ +V + FAT R + S KD S+ L AL G
Sbjct: 70 KLTCTVHGPRSLPRSAPFSPYMVLSTHVKFAPFATKQRRGYLRDSSEKDLSTHLETALRG 129
Query: 129 AIILETFPKTTVDVFALVLESGGSDLPVV----------------ISCASVALADAGIMM 172
A+I + +PK+ VDV ++E + V I+ AS A+ADAGI
Sbjct: 130 AMIADRWPKSGVDVVVTIIEGESTRQDAVERRVEEWDVMNVLGGCITVASAAIADAGIDC 189
Query: 173 YDLVA-SVSVSCLGKN-----LLIDPV-LEEESYQDGSLMIACMPSRYEVTQLTVTGEW- 224
D V+ V+ GK+ +++DPV LE ES + +A +P+R E+T L G
Sbjct: 190 VDTVSGGVAALVAGKDGSETSIVLDPVALEHESIL-ATCCVAYLPNRDEITNLWFKGRLP 248
Query: 225 STPHFNEA--MQLCLDASAKLGKIMRSCLKEAASDEQ 259
ST +N + + AS ++ + L E + Q
Sbjct: 249 STASYNHQSLVSRAVQASKGTHGLISASLSEVIGNSQ 285
>gi|291416252|ref|XP_002724360.1| PREDICTED: exosome component 4 [Oryctolagus cuniculus]
Length = 245
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 107/229 (46%), Gaps = 12/229 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + ++ + +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72
Query: 96 NCNVSYTTFATPVRGQGSDHKDFSS-----MLHKALEGAIILETFPKTTVDVFALVLESG 150
NC S TF+T R + H D S L + E AI+ + P++ +D++ VL++
Sbjct: 73 NCQYSSATFSTAERKR-RPHGDRKSCELGLQLRQTFEAAILTQLHPRSQIDIYVQVLQAD 131
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
G ++ A++A+ DAGI M D V + S + L D EE+ L +A +P
Sbjct: 132 GGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALTDLSHVEEASGSPQLALALLP 191
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAK----LGKIMRSCLKEAA 255
+ ++ L + H + ++ A+ L +++R ++EA+
Sbjct: 192 ASGQIALLEMDARLHEDHLEQVLEAAAQAARGVHTLLDRVVRQHVREAS 240
>gi|354491158|ref|XP_003507723.1| PREDICTED: exosome complex component RRP41-like [Cricetulus
griseus]
Length = 245
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 106/229 (46%), Gaps = 12/229 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + ++ + +
Sbjct: 13 RIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72
Query: 96 NCNVSYTTFATPVRGQGSDHKDFSS-----MLHKALEGAIILETFPKTTVDVFALVLESG 150
NC S TF+T R + H D S L + E AI+ + P++ +D++ VL++
Sbjct: 73 NCQYSSATFSTGERKR-RPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQAD 131
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
G ++ A++A+ DAGI M D V + S + L D EE+ L +A +P
Sbjct: 132 GGTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALSDLSHVEEAAGGPQLALALLP 191
Query: 211 SRYEVTQLTVTGEWSTPHFNE----AMQLCLDASAKLGKIMRSCLKEAA 255
+ ++ L + H + A Q D L +++R ++EA+
Sbjct: 192 ASGQIALLEMDSRLHEDHLEQVLEAAAQAARDVHTLLDRVVRQHVQEAS 240
>gi|417397757|gb|JAA45912.1| Putative exosome complex component rrp41 [Desmodus rotundus]
Length = 245
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 105/229 (45%), Gaps = 12/229 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + +A + +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 96 NCNVSYTTFATPVRGQGSDHKDFSS-----MLHKALEGAIILETFPKTTVDVFALVLESG 150
NC S TF+T R + H D S L + E AI+ + P++ +D++ VL++
Sbjct: 73 NCQYSSATFSTGERKR-RPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQAD 131
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
G ++ A++A+ DAGI M D V + S + L D EE+ L +A +P
Sbjct: 132 GGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLP 191
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCL----DASAKLGKIMRSCLKEAA 255
+ ++ L + H ++ D L +++R ++EA+
Sbjct: 192 ASGQIALLEMDARLHEDHLERVLEAAARAARDVHTLLDRVVRQHVREAS 240
>gi|388857757|emb|CCF48651.1| uncharacterized protein [Ustilago hordei]
Length = 309
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 108/204 (52%), Gaps = 22/204 (10%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
RPD+R + + RP F +T V SASGS+Y E G+ K+ SVFGPR+ K YS LN
Sbjct: 39 RPDNRSYAELRPIFLQTNLVPSASGSSYVEIGDLKLACSVFGPRQV-KGRQYSGKAELNV 97
Query: 98 NVSYTTFATPVR---GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG--- 151
V + F++ R G+ ++ S++LH+AL ++ L+ PK ++D+ +VL++ G
Sbjct: 98 EVKFAPFSSRRRRQPGRTTESAHLSNLLHQALLPSLRLDLLPKASLDIHIMVLQTDGLEE 157
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCL---------GKNLLIDPVLEEESYQDG 202
S + A+ ALA AGI MY LV SV+ + K +L+DP + G
Sbjct: 158 SCIAAACIAATTALASAGIEMYGLVVG-SVALIPSSPEKLAKDKRVLLDPSSSDLGLVTG 216
Query: 203 -----SLMIACMPSRYEVTQLTVT 221
+++ MP+ VT L V+
Sbjct: 217 MKTATRVLLCGMPALASVTCLNVS 240
>gi|452822821|gb|EME29837.1| exosome complex component RRP41 [Galdieria sulphuraria]
Length = 249
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 86/161 (53%), Gaps = 6/161 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
D LR D R + R R G + A GS + E GNT V+ +V+GPRE S+ G
Sbjct: 10 DGLRTDGRRPLEIRKVTCRMGILPRADGSCHLEMGNTIVLATVYGPRELSSRQ--SSCGI 67
Query: 95 LNCNVSYTTFATP--VRGQGSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ C S +FA+ RG+ SD + +S + K E ++ + FPK+ VD+F VL++
Sbjct: 68 IRCEYSMASFASTDRRRGKRSDRNSVEMASSIKKTFENVLLTDLFPKSRVDIFIQVLQAD 127
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLID 191
GS+ I+ ++A+ +AGI M DL+ S S + ++D
Sbjct: 128 GSERSAAINAVTIAMVNAGIPMKDLIVSCSAGYMENTTVMD 168
>gi|194215186|ref|XP_001917049.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex component
RRP41-like [Equus caballus]
Length = 245
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 105/229 (45%), Gaps = 12/229 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + +A + +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 96 NCNVSYTTFATPVRGQGSDHKDFSS-----MLHKALEGAIILETFPKTTVDVFALVLESG 150
NC S TF+T R + H D S L + E AI+ + P++ +D++ VL++
Sbjct: 73 NCQYSSATFSTGERKR-RPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQAD 131
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
G ++ A++A+ DAGI M D V + S + L D EE+ L +A +P
Sbjct: 132 GGTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLP 191
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCL----DASAKLGKIMRSCLKEAA 255
+ ++ L + H + ++ D L +++R + EA+
Sbjct: 192 ASGQIALLEMDARLHEDHLEQVLEAAARAARDVHTLLDRVVRQHVHEAS 240
>gi|344307537|ref|XP_003422437.1| PREDICTED: exosome complex component RRP41-like [Loxodonta
africana]
Length = 245
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 105/229 (45%), Gaps = 12/229 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + +A + +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 96 NCNVSYTTFATPVRGQGSDHKDFSS-----MLHKALEGAIILETFPKTTVDVFALVLESG 150
NC S TF+T R + H D S L + E AI+ + P++ +D++ VL++
Sbjct: 73 NCQYSSATFSTGERKR-RPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQAD 131
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
G ++ A++A+ DAGI M D V + S + L D EE+ L +A +P
Sbjct: 132 GGTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLP 191
Query: 211 SRYEVTQLTVTGEWSTPH----FNEAMQLCLDASAKLGKIMRSCLKEAA 255
+ ++ L + H A + D L +++R ++EA+
Sbjct: 192 ASGQIALLEMDARLHEDHLEPVLEAAARAARDVHTLLDRVVRQHVREAS 240
>gi|194751933|ref|XP_001958278.1| GF10840 [Drosophila ananassae]
gi|190625560|gb|EDV41084.1| GF10840 [Drosophila ananassae]
Length = 325
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 107/234 (45%), Gaps = 22/234 (9%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS-NIGRLNCNVSYTTFAT 106
R F R G + + GSAY E+GNTKV+ V P E +A N+G +NC V++ FAT
Sbjct: 48 RKTFIRAGVLTTVRGSAYMEYGNTKVLAIVAPPHELMRASARRMNMGVINCYVNFAAFAT 107
Query: 107 -PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVAL 165
+ + SML KALE + F +D+ L+L+ G L I+C VAL
Sbjct: 108 GELESVPERERHLGSMLTKALEPVVCRTEFLNFQLDIRVLILDDDGCLLSTAINCCGVAL 167
Query: 166 ADAGIMMYDLVASVSVSCLGKN-LLIDPVLEEESY------------------QDGSLMI 206
+ GI YDL+ + S +C+ +N + ++P + E + G ++
Sbjct: 168 VECGISTYDLITA-STACIYRNHVFLNPSSKVEELLWKHRGVQIEAASGSAPEEHGLVIT 226
Query: 207 ACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDEQE 260
A M + ++ Q G S + + + L + L +++R L ++ E
Sbjct: 227 ASMDTFDQIAQCQQCGYLSPETYVKLLDYTLAVNKSLRQLIRQVLTTRVREQHE 280
>gi|350584883|ref|XP_003481840.1| PREDICTED: exosome complex component MTR3-like [Sus scrofa]
Length = 254
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 114/229 (49%), Gaps = 31/229 (13%)
Query: 39 PDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI------ 92
P +R + RP + R G ++ A GSAY E G TKV+ +V GPR+++
Sbjct: 28 PAARDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGTGGE 87
Query: 93 ------GRLNCNVSYTTFATPVRGQ---GSDHKDFSSMLHKALEGAIILETFPKTTVDVF 143
GRL C+ F+ R G + ++ + L +ALE A+ L +P+ ++V
Sbjct: 88 APAALRGRLLCDFRRAPFSGRRRRAPPGGGEERELALALQEALEPAVRLGRYPRAQLEVS 147
Query: 144 ALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGS 203
AL+LE GGS L ++ A++ALADAGI MYDLV V C E S
Sbjct: 148 ALLLEDGGSALAAALTAAALALADAGIEMYDLV----VGC-----------GXEERAAAS 192
Query: 204 LMIACMPSRYEVTQLTVTGEWS-TPHFNEAMQLCLDASAKLGKIMRSCL 251
L +A MP +V L +GE T + EA++L L+ +L +++ CL
Sbjct: 193 LTVALMPVLNQVAGLLGSGEGGPTESWAEAVRLGLEGCQRLYPVLQQCL 241
>gi|168063069|ref|XP_001783497.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664987|gb|EDQ51687.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 246
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 104/224 (46%), Gaps = 5/224 (2%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIG 93
+ LR D R + R G V SA GSA GNT+V+ V+GP E KA +
Sbjct: 9 EGLRLDGRRPPEMRHLHAVVGVVPSADGSALFHMGNTQVMAVVYGPHEVHNKAHQLHDKA 68
Query: 94 RLNCNVSYTTFAT----PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ C S F+T + S ++ + LE AI+ P++ +D++ VL++
Sbjct: 69 LVRCEYSMAAFSTGERRRRGKTDRRATELSLVIGQTLEAAIMTHLLPRSQIDIYVQVLQA 128
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACM 209
G I+ AS+ALADAGI M DLV S + L L+D +E+S L++
Sbjct: 129 DGGTRAACINAASMALADAGIPMRDLVVSCAAGYLNSTPLLDLNYQEDSGGGPDLVVGYF 188
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
P +++ L + + S F + ++L + + + R L E
Sbjct: 189 PKLEKLSLLQMDSKVSIETFEKVLELATEGAKAVATFTREKLLE 232
>gi|195476691|ref|XP_002086206.1| GE23007 [Drosophila yakuba]
gi|194185996|gb|EDW99607.1| GE23007 [Drosophila yakuba]
Length = 328
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 105/236 (44%), Gaps = 23/236 (9%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS-NIGRLNCNVSYTTFAT 106
R F R G + + GSAY E+GNTKV+ V P+E +A N+G LNC V++ FAT
Sbjct: 48 RNTFIRAGVLTTVRGSAYMEYGNTKVLAIVAPPKELIRASARRMNMGVLNCYVNFAAFAT 107
Query: 107 -PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVAL 165
+ + SML KA+E + F +D+ L+L+ G L I+C VAL
Sbjct: 108 GDLDSVPERERHLGSMLTKAMEPVVCRTEFLNFQLDIRVLILDDDGCLLSTAINCCGVAL 167
Query: 166 ADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESY---------------------QDGSL 204
+ GI YDL+ + + ++ I+P + E + G +
Sbjct: 168 VECGISTYDLITASTACIYRDHVFINPSAKVEELLWKHRGNSNTDSTTTSPSSVQEHGLI 227
Query: 205 MIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDEQE 260
+ A M + ++ Q G S + + + L + L +++R L + ++ E
Sbjct: 228 ITASMDTFEQIAQCQQCGYLSPATYMKLLDYTLAVNKSLRQLIRGVLTKRVKEQHE 283
>gi|198466492|ref|XP_001354017.2| GA20773 [Drosophila pseudoobscura pseudoobscura]
gi|198150625|gb|EAL29754.2| GA20773 [Drosophila pseudoobscura pseudoobscura]
Length = 328
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 76/149 (51%), Gaps = 2/149 (1%)
Query: 51 FFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS-NIGRLNCNVSYTTFAT-PV 108
R G + + GSAY E+GNTKV+ V P E +A N+G +NC V++ FAT +
Sbjct: 48 LLRAGVLTTVRGSAYMEYGNTKVMAIVAPPHEMMRATARRMNMGVINCFVNFAAFATGEL 107
Query: 109 RGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADA 168
K SML KALE + F +D+ L+L+ G L I+C VAL +
Sbjct: 108 ESVPEREKHLGSMLSKALEPVVCRTEFLNFQLDIRVLILDDDGCLLSTAINCCGVALVEC 167
Query: 169 GIMMYDLVASVSVSCLGKNLLIDPVLEEE 197
GI YDLV + + N+ ++P +EE
Sbjct: 168 GISTYDLVTASTACIYRDNVFLNPTAKEE 196
>gi|195354294|ref|XP_002043633.1| GM15571 [Drosophila sechellia]
gi|194127801|gb|EDW49844.1| GM15571 [Drosophila sechellia]
Length = 327
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 106/235 (45%), Gaps = 22/235 (9%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS-NIGRLNCNVSYTTFAT 106
R F R G + + GSAY E+GNTKV+ V P+E +A N+G LNC V++ F T
Sbjct: 48 RNTFIRAGVLTTVRGSAYMEYGNTKVLTIVAPPKELIRASARRMNMGVLNCYVNFAAFGT 107
Query: 107 -PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVAL 165
+ + SSML KALE + F +D+ L+L+ G L I+C VAL
Sbjct: 108 GDLDSVPERERYLSSMLTKALEPVVCRTEFLNFQLDIRVLILDDDGCLLSTAINCCGVAL 167
Query: 166 ADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESY--------------------QDGSLM 205
+ GI YDL+ + + ++ ++P + E + G ++
Sbjct: 168 VECGISTYDLITASTACIYRDHVFLNPSAKIEELLWKHRSNSGTDSTTSSSSVQEHGLII 227
Query: 206 IACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDEQE 260
A M + ++ Q G S + + + LD + L ++++ L + ++ E
Sbjct: 228 TASMDTFEQIAQCQQCGYLSPDTYVKLLDYTLDMNKSLRELVKGVLTKRVKEQHE 282
>gi|301773432|ref|XP_002922117.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 1
[Ailuropoda melanoleuca]
Length = 245
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 104/229 (45%), Gaps = 12/229 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + +A + +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 96 NCNVSYTTFATPVRGQGSDHKDFSS-----MLHKALEGAIILETFPKTTVDVFALVLESG 150
NC S TF+T R + H D S L + E AI+ + P++ +D++ VL++
Sbjct: 73 NCQYSSATFSTGERKR-RPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQAD 131
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
G ++ A++A+ DAGI M D V + S + L D EE+ L +A +P
Sbjct: 132 GGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDSTALADLSHVEEAAGGPQLALALLP 191
Query: 211 SRYEVTQLTVTGEWSTPHFNE----AMQLCLDASAKLGKIMRSCLKEAA 255
+ ++ L + H + A Q D L ++R + EA+
Sbjct: 192 ASGQIALLEMDARLHEDHLEQVLEAAAQAARDVHTLLDHVVRQHVCEAS 240
>gi|301773434|ref|XP_002922118.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 2
[Ailuropoda melanoleuca]
Length = 240
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 103/227 (45%), Gaps = 13/227 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R + R R G A GSAY E GNTK + V+GP E+K + +NC
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEAKG---RRDRALVNC 69
Query: 98 NVSYTTFATPVRGQGSDHKDFSS-----MLHKALEGAIILETFPKTTVDVFALVLESGGS 152
S TF+T R + H D S L + E AI+ + P++ +D++ VL++ G
Sbjct: 70 QYSSATFSTGERKR-RPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGG 128
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSR 212
++ A++A+ DAGI M D V + S + L D EE+ L +A +P+
Sbjct: 129 TYAACVNAATLAVLDAGIPMRDFVCACSAGFVDSTALADLSHVEEAAGGPQLALALLPAS 188
Query: 213 YEVTQLTVTGEWSTPHFNE----AMQLCLDASAKLGKIMRSCLKEAA 255
++ L + H + A Q D L ++R + EA+
Sbjct: 189 GQIALLEMDARLHEDHLEQVLEAAAQAARDVHTLLDHVVRQHVCEAS 235
>gi|195166781|ref|XP_002024213.1| GL22907 [Drosophila persimilis]
gi|194107568|gb|EDW29611.1| GL22907 [Drosophila persimilis]
Length = 328
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 76/149 (51%), Gaps = 2/149 (1%)
Query: 51 FFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS-NIGRLNCNVSYTTFAT-PV 108
R G + + GSAY E+GNTKV+ V P E +A N+G +NC V++ FAT +
Sbjct: 48 LLRAGVLTTVRGSAYMEYGNTKVMAIVAPPHELMRATARRMNMGVINCFVNFAAFATGEL 107
Query: 109 RGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADA 168
K SML KALE + F +D+ L+L+ G L I+C VAL +
Sbjct: 108 ESVPEREKHLGSMLSKALEPVVCRTEFLNFQLDIRVLILDDDGCLLSTAINCCGVALVEC 167
Query: 169 GIMMYDLVASVSVSCLGKNLLIDPVLEEE 197
GI YDLV + + N+ ++P +EE
Sbjct: 168 GISTYDLVTASTACIYRDNVFLNPTAKEE 196
>gi|452211130|ref|YP_007491244.1| Ribonuclease PH [Methanosarcina mazei Tuc01]
gi|452101032|gb|AGF97972.1| Ribonuclease PH [Methanosarcina mazei Tuc01]
Length = 465
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 102/205 (49%), Gaps = 5/205 (2%)
Query: 52 FRTGAVNSASGSAYAEFGNTKVIVSVFGPRES---KKAMMYSNIGRLNCNVSYTTFATPV 108
G ++ A GS Y E+G K++V VFGPRE+ + S + R N++ +
Sbjct: 3 IEVGVLSRADGSCYLEWGRNKILVGVFGPREAHPRRSQRADSAVIRYRYNMASFSVEDRA 62
Query: 109 R-GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALAD 167
R G + S + +A E I+ E FPKT +D+F VL++ I+ +S+ALAD
Sbjct: 63 RPGPSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVEVLQADAGTRTAAINASSIALAD 122
Query: 168 AGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTP 227
AGI M L+ S + + +++D EE++Y + +A M E+T + + G +
Sbjct: 123 AGIPMKGLITSCAFGKVDGKIVLDLNKEEDNYGEADFPVA-MTQDGEITLIQMDGNLTPD 181
Query: 228 HFNEAMQLCLDASAKLGKIMRSCLK 252
+ ++L ++ +I ++ L+
Sbjct: 182 EIKQGLELVKKGCKEILEIQQAVLR 206
>gi|358396864|gb|EHK46239.1| hypothetical protein TRIATDRAFT_43269 [Trichoderma atroviride IMI
206040]
Length = 286
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 83/277 (29%), Positives = 128/277 (46%), Gaps = 38/277 (13%)
Query: 20 PTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEF--------GNT 71
P T PP++ +++ R RP + +TG SASGSAY E
Sbjct: 10 PGSSTLPPVYDDGELNAASRRQRAPDAIRPLYLKTGVTPSASGSAYLEIEPREGEHGSGM 69
Query: 72 KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG---QGSDHKDFSSMLHKALEG 128
K+ +V GPR ++ +S L+ +V + FAT R + S KD S+ L AL G
Sbjct: 70 KLTCTVHGPRSLPRSAPFSPYMVLSTHVKFAPFATKQRRGYIRDSSEKDLSTHLETALRG 129
Query: 129 AIILETFPKTTVDVFALVLESGGSDLPVV----------------ISCASVALADAGIMM 172
A+I + +PK+ VD+ ++E + V I+ AS A+ADAGI
Sbjct: 130 ALIADRWPKSGVDIVVTIIEGESTRQDAVERRVEEWDVMNVLGGCITVASAAIADAGIDC 189
Query: 173 YDL----VASVSVSCLGKN--LLIDPV-LEEESYQDGSLMIACMPSRYEVTQLTVTGEW- 224
D VA++ S G + +++DPV LE ES + +A +P+R EVT L G+
Sbjct: 190 VDTVSGGVAALVASKDGDDASIVLDPVALEHESIL-AACCVAYLPNRDEVTNLWFKGQLP 248
Query: 225 STPHFNEA--MQLCLDASAKLGKIMRSCLKEAASDEQ 259
S+ +N + + AS ++ + L EA S Q
Sbjct: 249 SSASYNHQSLVSRAVQASRGTHGLISASLSEAISSTQ 285
>gi|225708764|gb|ACO10228.1| Exosome complex exonuclease MTR3 [Caligus rogercresseyi]
Length = 278
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 107/222 (48%), Gaps = 11/222 (4%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRLNCNVSYTTFAT 106
RP F G + + GSAY E G TKV+ SVFGPRE SKK S G LN FA+
Sbjct: 49 RPLFCEVGILTQSKGSAYLERGRTKVLASVFGPREVSKKLDFSSTAGSLNVEYKEAPFAS 108
Query: 107 PVRGQG-SDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVAL 165
G+G + +D L + L + L +PK+ +DV VLE GS +P I+ A++AL
Sbjct: 109 RSDGRGEAKERDVGLFLAQTLRSTVCLHLYPKSRIDVCITVLEDDGSAIPTAITAAALAL 168
Query: 166 ADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQ---------DGSLMIACMPSRYEVT 216
+DA I ++DLV SV G L P EE Q G ++I PS ++
Sbjct: 169 SDASINLFDLVIGASVKLCGGKALSYPCKAEEGIQAHGSNAEENQGHIIIGYQPSLEQIA 228
Query: 217 QLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDE 258
L G + + M+ + A+ ++ CL + S++
Sbjct: 229 ALLQDGVLESSALSSQMRSLIKAAEATLPSVQECLMRSLSEK 270
>gi|149430580|ref|XP_001515504.1| PREDICTED: exosome complex component RRP41-like [Ornithorhynchus
anatinus]
Length = 245
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 106/226 (46%), Gaps = 10/226 (4%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + ++ + +
Sbjct: 13 RVDGRRAGELRKIEARMGVFAQADGSAYIEQGNTKALAVVYGPHEMRGLRSRALPDRALV 72
Query: 96 NCNVSYTTFATPVRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
NC S TF+T R + D K + S L + E AI+ + +P++ +D++ +L++ G
Sbjct: 73 NCQFSMATFSTGERKRRPHGDRKATEMSQHLQQTFEDAILTQLYPRSQIDIYVQILQADG 132
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS 211
+ ++ A++A+ DAGI + D V + S + L D EE+ + +A +P
Sbjct: 133 GNYAACVNAATLAVLDAGIPLRDFVCASSAGFVEDTPLADLSYVEEAAGGPQVALALLPG 192
Query: 212 RYEVTQLTVTGEWSTPHFNEAMQLCL----DASAKLGKIMRSCLKE 253
++T L + H ++ D L +++R +++
Sbjct: 193 SGQITLLGLDARVHEDHLERVLEAATAAARDVHTVLDRVVRRHVRQ 238
>gi|71020931|ref|XP_760696.1| hypothetical protein UM04549.1 [Ustilago maydis 521]
gi|46100124|gb|EAK85357.1| hypothetical protein UM04549.1 [Ustilago maydis 521]
Length = 297
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 92/171 (53%), Gaps = 21/171 (12%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
RPD R + Q RP F +T V SASGS+Y E G+ K+ SVFGPR+ K YS LN
Sbjct: 38 RPDQRSYSQLRPIFLQTHLVPSASGSSYVEIGDLKLACSVFGPRQV-KGRQYSGKAELNV 96
Query: 98 NVSYTTFATPVR---GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG--- 151
V + F++ R G+ ++ S +LH+AL ++ L+ PK ++D+ +VL++ G
Sbjct: 97 EVKFAPFSSRRRRRPGKTTESAHLSGLLHQALLPSLRLDLLPKASLDIHIMVLQTDGLEE 156
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLG----------KNLLIDP 192
S + A+ ALA AGI MY LV V C+ K +L+DP
Sbjct: 157 SCIAAACIAATTALASAGIEMYGLV----VGCVALVPSTTDSKDKQVLVDP 203
>gi|301097298|ref|XP_002897744.1| exosome complex exonuclease RRP41-like protein [Phytophthora
infestans T30-4]
gi|262106765|gb|EEY64817.1| exosome complex exonuclease RRP41-like protein [Phytophthora
infestans T30-4]
Length = 777
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 107/240 (44%), Gaps = 24/240 (10%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS-NI 92
V LR D R + R R G + GS+Y E GNTKV+ V+GPRE + A S N
Sbjct: 22 VAGLRVDGRRSEEVRRIRTRFGLFSRVDGSSYYEQGNTKVVAVVYGPRELRTAAAGSVNS 81
Query: 93 G-------------------RLNCNVSYTTFAT----PVRGQGSDHKDFSSMLHKALEGA 129
G +NC + FAT P R + S + + E
Sbjct: 82 GAAAVGTGSGNAASNTQPRATVNCEFTQAAFATSERKPQRSGDRKKLEMSLAVKQIFEAC 141
Query: 130 IILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLL 189
I + +P++ +D+F VL + G +LP I+ ++AL DAGI + D V + S L + +L
Sbjct: 142 IQTQLYPRSQIDIFVQVLHADGGELPASINAITLALIDAGIALNDFVVASSAGYLQQTML 201
Query: 190 IDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRS 249
D EE + ++IA P ++ L + + F M++ + ++ ++++
Sbjct: 202 CDLNYAEEVARAPQMIIALNPRTQKLNLLQMECKLQLELFESLMEVATEGCNQIYDLLQN 261
>gi|195496098|ref|XP_002095549.1| GE22455 [Drosophila yakuba]
gi|194181650|gb|EDW95261.1| GE22455 [Drosophila yakuba]
Length = 328
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 105/236 (44%), Gaps = 23/236 (9%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS-NIGRLNCNVSYTTFAT 106
R F R G + + GSAY E+GNTKV+ V P+E +A N+G LNC V++ FAT
Sbjct: 48 RNTFIRAGVLTTVRGSAYMEYGNTKVLAIVAPPKELIRASARRMNMGVLNCYVNFAAFAT 107
Query: 107 -PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVAL 165
+ + SML KA+E + F +D+ L+L+ G L I+C VAL
Sbjct: 108 GDLDSVPERERHLGSMLTKAMEPVVCRTEFLNFQLDIRVLILDDDGCLLSTAINCCGVAL 167
Query: 166 ADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESY---------------------QDGSL 204
+ GI YDL+ + + ++ I+P + E + G +
Sbjct: 168 VECGISTYDLITASTACIYRDHVFINPSAKVEELLWKHRGNSNTDSTTTSPSSVQEHGLI 227
Query: 205 MIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDEQE 260
+ A M + ++ Q G S + + + + + L +++R L + ++ E
Sbjct: 228 ITASMDTFEQIAQCQQCGYLSPATYMKLLDYTVAVNKSLRQLIRGVLTKRVKEQHE 283
>gi|400600058|gb|EJP67749.1| 3' exoribonuclease [Beauveria bassiana ARSEF 2860]
Length = 283
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 117/259 (45%), Gaps = 35/259 (13%)
Query: 20 PTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEF--------GNT 71
P+ T PP++ DV + +R + R + +TG SASGSAY EF
Sbjct: 10 PSGATVPPVYDDEDVVSTQ-RTRPANGIRAIYLKTGVTPSASGSAYLEFEPREGYSGSGM 68
Query: 72 KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG---QGSDHKDFSSMLHKALEG 128
K+ +V GPR ++ +S L+ +V Y FAT R + S +D S+ L AL G
Sbjct: 69 KLTCTVHGPRSLPRSAPFSPHMVLSTHVKYAPFATKQRRGYLRDSSERDLSTHLETALRG 128
Query: 129 AIILETFPKTTVDVFALVLE-----SGGSD-----------LPVVISCASVALADAGIMM 172
+I + +PK+ VDV ++E D L I+ AS A+ADAGI
Sbjct: 129 TLIADRWPKSGVDVVVTIIEGELTRQAAQDQGIESWEMMNVLSGCITVASAAIADAGIDC 188
Query: 173 YDLVASVSVSCLGKN------LLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWST 226
D VA + + K+ +++DPV E + +A +PSR E+T L G
Sbjct: 189 VDTVAGGVAAMVTKDSDDQPAIVLDPVPSEHGQVLAACCVAYLPSRDEITNLWFKGRLQ- 247
Query: 227 PHFNEAMQLCLDASAKLGK 245
P E+ +L + + K
Sbjct: 248 PSNTESQRLLISRAVHASK 266
>gi|402912105|ref|XP_003918628.1| PREDICTED: exosome complex component MTR3 [Papio anubis]
Length = 272
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 115/225 (51%), Gaps = 19/225 (8%)
Query: 46 QCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI------------G 93
+ RP + R G ++ A GSAY E G TKV+ +V GPR+++ G
Sbjct: 35 RLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGSGGEAPAALRG 94
Query: 94 RLNCNVSYTTFATPVRGQ---GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
RL C+ FA R G + ++ + L +ALE A+ L +P+ ++V AL+LE G
Sbjct: 95 RLLCDFRRAPFAGRRRRAPPGGGEERELALALQEALEPAVRLGRYPRAQLEVSALLLEDG 154
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGK---NLLIDPVLEEESYQDGSLMIA 207
GS L ++ A++ALADAG+ MYDLV +S + L+DP EE + L +A
Sbjct: 155 GSALAAALTAAALALADAGVEMYDLVVGCGLSLAPRPAPTWLLDPTRLEEEHAAAGLTVA 214
Query: 208 CMPSRYEVTQLTVTGEWST-PHFNEAMQLCLDASAKLGKIMRSCL 251
MP +V L +GE + EA++L L+ +L +++ L
Sbjct: 215 LMPVLNQVAGLLGSGEGGLIESWAEAVRLGLEGCQRLYPVLQQSL 259
>gi|343425437|emb|CBQ68972.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 303
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 102/201 (50%), Gaps = 18/201 (8%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
RPD R + RP F +T V SASGS+Y E G+ K+ SVFGPR+ K YS LN
Sbjct: 41 RPDKRAYADLRPIFLQTNLVPSASGSSYVEIGDLKLACSVFGPRQV-KGRQYSGKAELNV 99
Query: 98 NVSYTTFATPVR---GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSD- 153
V + F++ R G+ ++ S +LH+AL ++ L+ PK ++D+ +VL++ G +
Sbjct: 100 EVKFAPFSSRRRRKPGKTTESAHLSGLLHQALLPSLRLDLLPKASLDIHIMVLQTDGLEE 159
Query: 154 --LPVVISCASVALADAGIMMYDLVASV------SVSCLGKNLLIDPVLEEESYQDG--- 202
+ AS ALA AGI M+ LV S K +L+DP + G
Sbjct: 160 SCIAAACIAASTALASAGIDMFGLVVGTVALIPSSRDANEKRVLLDPSSADLGLVSGMKT 219
Query: 203 --SLMIACMPSRYEVTQLTVT 221
+++ MP+ VT L V+
Sbjct: 220 ATRVLLCGMPALASVTCLNVS 240
>gi|422294508|gb|EKU21808.1| exosome complex component RRP41 [Nannochloropsis gaditana CCMP526]
Length = 249
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 106/225 (47%), Gaps = 11/225 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R ++ R G ++A GSA + G T+V+ V GP E + S +
Sbjct: 14 LRTDGRRPNELRRVHCTLGTYSNADGSASLKQGQTEVLAIVHGPHEVTR---RSEVQHDK 70
Query: 97 CNVSYTTFATPVRGQGSDHK---DFSSM-----LHKALEGAIILETFPKTTVDVFALVLE 148
C + + TP G + D +S+ L + E A++ +P+T VD+ VL+
Sbjct: 71 CIIECEFYRTPFSGFDRKKRRPTDRASLEASLALKQTFETAVMRNLYPRTQVDIQVYVLQ 130
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
GS LP I+ S+AL DAG+ M ++V + SV+ L K ++D +E+S + +A
Sbjct: 131 GDGSILPTAINAVSLALVDAGVAMKEMVTACSVALLDKQPVLDVTYKEQSSGGAYMPLAA 190
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
P E+ + E M ++ S ++ ++ ++ +KE
Sbjct: 191 FPIHGEIILIQCEARLEGERLEEMMLTAMEGSRQVSQLFQTQVKE 235
>gi|212721602|ref|NP_001131612.1| RNase PH homolog [Zea mays]
gi|194692034|gb|ACF80101.1| unknown [Zea mays]
gi|413948419|gb|AFW81068.1| exosome complex exonuclease RRP41 isoform 1 [Zea mays]
gi|413948420|gb|AFW81069.1| exosome complex exonuclease RRP41 isoform 2 [Zea mays]
gi|413948421|gb|AFW81070.1| exosome complex exonuclease RRP41 isoform 3 [Zea mays]
gi|413948422|gb|AFW81071.1| exosome complex exonuclease RRP41 isoform 4 [Zea mays]
Length = 242
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 106/231 (45%), Gaps = 11/231 (4%)
Query: 29 FSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE--SKKA 86
+G VD RP ++ R G V A GSA E GNT+VI +V+GPRE +K
Sbjct: 7 LTGFRVDGRRP-----NEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKGQ 61
Query: 87 MMYSNIGRLNCNVSYTTFATPVRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDV 142
+ S + C F+T R + D + + S ++ + +E +I+ P + +D+
Sbjct: 62 QVNSKEALVRCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPHSQIDI 121
Query: 143 FALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDG 202
+ VL++ G I+ A++ALADAGI M D+ S S L L+D E+S
Sbjct: 122 YVQVLQADGGTRSACINAATLALADAGIPMRDIATSCSAGYLCSTPLLDLNYLEDSAGGS 181
Query: 203 SLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
+ + + +VT L + + F M L ++ + +R L E
Sbjct: 182 DVTVGILAKMDKVTLLQMDAKLPIDTFENVMGLAIEGCKAIATYIREVLLE 232
>gi|195379434|ref|XP_002048484.1| GJ13996 [Drosophila virilis]
gi|194155642|gb|EDW70826.1| GJ13996 [Drosophila virilis]
Length = 329
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 105/240 (43%), Gaps = 29/240 (12%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRLNCNVSYTTFAT 106
R F R G + + GSAY E+GNTKV+ V PRE + + N+G +NC V++ FA+
Sbjct: 46 RSTFIRAGVLTTVRGSAYMEYGNTKVLAIVAPPRELVRSSARRVNMGVINCYVNFAAFAS 105
Query: 107 -PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVAL 165
+ K SML KALE + F +D+ L+L+ G L I+C VAL
Sbjct: 106 GELESVPEREKHLGSMLTKALEPLVCRNEFLNFQLDIRVLILDDDGCLLSTAINCCGVAL 165
Query: 166 ADAGIMMYDLVASVSVSCL---------------------GKNLLI-----DPVLEEESY 199
+ GI YDL+ + S +C+ G N L+ D E
Sbjct: 166 IECGISTYDLI-TASTACIYRGYVFVNPSAKVEELLWQHRGGNALVGSSSSDSNKEAAIQ 224
Query: 200 QDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDEQ 259
+ G L+ A M + ++ Q G + + L+ + L +++R L E ++
Sbjct: 225 EHGLLINASMDTFEQLAQCQQCGYLKPETYVRLLDYTLEINKSLRQLIRRVLTERVKEQH 284
>gi|195020230|ref|XP_001985151.1| GH16904 [Drosophila grimshawi]
gi|193898633|gb|EDV97499.1| GH16904 [Drosophila grimshawi]
Length = 331
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 81/148 (54%), Gaps = 4/148 (2%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRLNCNVSYTTFAT 106
R F R G + + GSAY E+GNTK++ V PRE + + N+G LNC V++ FA+
Sbjct: 46 RSTFIRAGVLTTVRGSAYMEYGNTKMMAIVAPPRELVRSSAGRVNMGVLNCYVNFAAFAS 105
Query: 107 -PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVAL 165
+ K SML KALE + F +D+ L+L+ G L I+C VAL
Sbjct: 106 GELASLPEREKHLGSMLTKALEPLVCRNEFLNFQLDIRVLILDDDGCLLSTAINCCGVAL 165
Query: 166 ADAGIMMYDLVASVSVSCLGKN-LLIDP 192
+ GI YDL+A+ S +C+ ++ + ++P
Sbjct: 166 VECGISTYDLIAA-STACIYRDQVFLNP 192
>gi|24667071|ref|NP_649157.1| Mtr3 [Drosophila melanogaster]
gi|7293727|gb|AAF49096.1| Mtr3 [Drosophila melanogaster]
gi|157816310|gb|ABV82149.1| FI01414p [Drosophila melanogaster]
Length = 326
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 77/147 (52%), Gaps = 2/147 (1%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS-NIGRLNCNVSYTTFAT 106
R F R G + + GSAY E+GNTKV+ V P+E +A N+G LNC V++ F+T
Sbjct: 48 RNTFIRAGVLTTVRGSAYMEYGNTKVLAIVAPPKELIRASARRMNMGVLNCYVNFAAFST 107
Query: 107 -PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVAL 165
+ + SSML KA+E + F +D+ L+L+ G L I+C VAL
Sbjct: 108 GDLDSVPERERHLSSMLTKAMEPVVCRTEFLNFQLDIRVLILDDDGCLLSTAINCCGVAL 167
Query: 166 ADAGIMMYDLVASVSVSCLGKNLLIDP 192
+ GI YDL+ + + ++ ++P
Sbjct: 168 VECGISTYDLITASTACIYRDHVFLNP 194
>gi|167043479|gb|ABZ08176.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
microorganism HF4000_APKG2H5]
Length = 238
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 109/224 (48%), Gaps = 4/224 (1%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
D + R D R RP G V A+GSA +G VI +V+GP E+ + + +
Sbjct: 11 DENGRRMDGRKPADLRPISIEVGVVPVAAGSACVRWGTNHVIAAVYGPMEAHPRKISRQD 70
Query: 92 IGRLNCNVSYTTFATPVR---GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
L+ + F+T R G ++ S + ALE ++LE +P++ + V +L
Sbjct: 71 RAVLDVRYNMAPFSTTDRIRPGFNRRSREISKVTSDALESVVLLEMYPRSKIRVEIEILC 130
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ V ++ ASVALA AGI M D+V SV+ + ++ D EE++Y + L +
Sbjct: 131 AEAGTRCVGLTAASVALAHAGIPMTDMVVSVASGKINGVVICDLNKEEDNYGEADLPMGM 190
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
+P+ ++ L + G+ S F +A ++A + +IM LK
Sbjct: 191 LPNSGDLVFLQMDGDLSPDEFQQAWDYNMEAGLAVHEIMVQALK 234
>gi|195622232|gb|ACG32946.1| exosome complex exonuclease RRP41 [Zea mays]
Length = 242
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 106/231 (45%), Gaps = 11/231 (4%)
Query: 29 FSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE--SKKA 86
+G VD RP ++ R G V A GSA E GNT+VI +V+GPRE +K
Sbjct: 7 LTGFRVDGRRP-----NEMRQLKGEVGVVVRADGSALFEMGNTRVIAAVYGPREVQNKGQ 61
Query: 87 MMYSNIGRLNCNVSYTTFATPVRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDV 142
+ S + C F+T R + D + + S ++ + +E +I+ P + +D+
Sbjct: 62 QVNSKEALVRCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPHSQIDI 121
Query: 143 FALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDG 202
+ VL++ G I+ A++ALADAGI M D+ S S L L+D E+S
Sbjct: 122 YVQVLQADGGTRSACINAATLALADAGIPMRDIATSCSAGYLCSTPLLDLNYLEDSAGGS 181
Query: 203 SLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
+ + + +VT L + + F M L ++ + +R L E
Sbjct: 182 DVTVGILAKMDKVTLLQMDAKLPIDTFENVMGLAIEGCKAIATYIREVLLE 232
>gi|149038199|gb|EDL92559.1| rCG51656 [Rattus norvegicus]
Length = 252
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 124/245 (50%), Gaps = 34/245 (13%)
Query: 23 KTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE 82
+++PP ++ D P +R + RP + R G ++ A GSAY E G TKV+ +V GPR+
Sbjct: 13 ESQPPQLYAAEEDET-PAARDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQ 71
Query: 83 SKKAMMYSNI------------GRLNCNVSYTTFATPVRG--QGS-DHKDFSSMLHKALE 127
++ GRL C+ F+ R QGS + ++ L +ALE
Sbjct: 72 AEGGERGGGPAGAGGEAPAALRGRLLCDFRRAPFSGRRRRAPQGSSEDRELGLALQEALE 131
Query: 128 GAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKN 187
A+ L +P+ ++V AL+LE GGS L ++ A++ALADAG+ MYDLV V C
Sbjct: 132 PAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVEMYDLV----VGC---G 184
Query: 188 LLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGE-WSTPHFNEAMQLCLDASAKLGKI 246
L + P L +A MP +V L +GE T + +A++L L+ +L +
Sbjct: 185 LSLTP----------GLTVALMPVLNQVAGLLGSGEGGQTESWTDAVRLGLEGCQRLYPV 234
Query: 247 MRSCL 251
++ CL
Sbjct: 235 LQQCL 239
>gi|29611663|ref|NP_780608.1| exosome complex component RRP41 [Mus musculus]
gi|21759405|sp|Q921I9.3|EXOS4_MOUSE RecName: Full=Exosome complex component RRP41; AltName:
Full=Exosome component 4; AltName: Full=Ribosomal
RNA-processing protein 41
gi|15126706|gb|AAH12277.1| Exosome component 4 [Mus musculus]
gi|26354721|dbj|BAC40987.1| unnamed protein product [Mus musculus]
gi|74184267|dbj|BAE25679.1| unnamed protein product [Mus musculus]
gi|74198393|dbj|BAE39680.1| unnamed protein product [Mus musculus]
Length = 245
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 106/229 (46%), Gaps = 12/229 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + ++ + +
Sbjct: 13 RIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72
Query: 96 NCNVSYTTFATPVRGQGSDHKDFSS-----MLHKALEGAIILETFPKTTVDVFALVLESG 150
NC S TF+T R + H D S L + E AI+ + P++ +D++ VL++
Sbjct: 73 NCQYSSATFSTGERKR-RPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQAD 131
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
G ++ A++A+ DAGI M D V + S + L D EE+ L +A +P
Sbjct: 132 GGTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLP 191
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAK----LGKIMRSCLKEAA 255
+ ++ L + H + ++ A+ L ++R ++EA+
Sbjct: 192 ASGQIALLEMDSRLHEDHLEQVLEAAAQAARGVHTLLDLVVRQHVQEAS 240
>gi|194874459|ref|XP_001973402.1| GG13362 [Drosophila erecta]
gi|190655185|gb|EDV52428.1| GG13362 [Drosophila erecta]
Length = 319
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 104/227 (45%), Gaps = 14/227 (6%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS-NIGRLNCNVSYTTFAT 106
R F R G + + GSAY E+GNTKV+ V P+E +A N+G LNC V++ FA+
Sbjct: 48 RNTFIRAGVLTTVRGSAYMEYGNTKVLAIVAPPKELLRASARRMNMGVLNCYVNFAAFAS 107
Query: 107 -PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVAL 165
+ + S ML KA+E + F +D+ L+L+ G L I+C VAL
Sbjct: 108 GDLDSVTERERHLSGMLTKAMEPVVCRTEFLNFQLDIRVLILDDDGCLLSTAINCCGVAL 167
Query: 166 ADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESY------------QDGSLMIACMPSRY 213
+ GI YDLV + + ++ ++P + E + G ++ A M +
Sbjct: 168 VECGISTYDLVTASTACIYRDHVFLNPSAKIEELARKHRRGSNAVQEHGLIITASMDTFE 227
Query: 214 EVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDEQE 260
++ G S + + + L + L +++R L + ++ E
Sbjct: 228 QIALCKQYGYLSIVTYIKLLDYTLAVNKSLRQLVRGVLTKRVKEQHE 274
>gi|148697598|gb|EDL29545.1| exosome component 4, isoform CRA_b [Mus musculus]
Length = 271
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 106/229 (46%), Gaps = 12/229 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + ++ + +
Sbjct: 39 RIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 98
Query: 96 NCNVSYTTFATPVRGQGSDHKDFSS-----MLHKALEGAIILETFPKTTVDVFALVLESG 150
NC S TF+T R + H D S L + E AI+ + P++ +D++ VL++
Sbjct: 99 NCQYSSATFSTGERKR-RPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQAD 157
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
G ++ A++A+ DAGI M D V + S + L D EE+ L +A +P
Sbjct: 158 GGTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLP 217
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAK----LGKIMRSCLKEAA 255
+ ++ L + H + ++ A+ L ++R ++EA+
Sbjct: 218 ASGQIALLEMDSRLHEDHLEQVLEAAAQAARGVHTLLDLVVRQHVQEAS 266
>gi|254570999|ref|XP_002492609.1| 3'-to-5' phosphorolytic exoribonuclease that is a subunit of the
exosome [Komagataella pastoris GS115]
gi|238032407|emb|CAY70430.1| 3'-to-5' phosphorolytic exoribonuclease that is a subunit of the
exosome [Komagataella pastoris GS115]
gi|328353384|emb|CCA39782.1| exosome complex component RRP41 [Komagataella pastoris CBS 7435]
Length = 246
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 92/170 (54%), Gaps = 12/170 (7%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNS----ASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI 92
LR D R +++ R + R +N+ A GSAY E GNTK++ + GP E ++ M +
Sbjct: 9 LRVDGRRWNELRRFYCR---INTHPIVADGSAYVEAGNTKIVCLLNGPHEPTRSQMNTQK 65
Query: 93 GRLNCNVSYTTFATPVRGQGSDH----KDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
G L+ + + F+T R + + + ++ S++L E +IL+ +P+T ++V VL
Sbjct: 66 GSLDIKLHVSPFSTTERRKVTRNDRRIQELSTILKNTFEQVVILKNYPRTIIEVNVRVLA 125
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLID-PVLEEE 197
G L + ++AL DAGI +YD +++VS +L+D LEE+
Sbjct: 126 QDGGLLAACCNAITLALVDAGIALYDYISAVSAGVFDNQILLDLNRLEEQ 175
>gi|321263017|ref|XP_003196227.1| hypothetical Protein CGB_I3550C [Cryptococcus gattii WM276]
gi|317462702|gb|ADV24440.1| conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 268
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 113/228 (49%), Gaps = 14/228 (6%)
Query: 42 RGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSY 101
R + RP F +TG ++ A GS Y E G K+ SV+GPR G LN V +
Sbjct: 37 RTDQESRPIFLKTGLISQAHGSGYIEAGGVKIACSVYGPRPKPPPYSPQ--GTLNLEVKF 94
Query: 102 TTFAT-PVRGQGSDHKDF--SSMLHKALEGAIILETFPKTTVDVFALVLESGG--SDLPV 156
FA+ P R D + S++L + L + L PK+++DV+ LVLES + L
Sbjct: 95 APFASDPRRAPLRDTEPLPLSNLLTQLLLPTLHLHLLPKSSIDVYLLVLESDTLTNVLSA 154
Query: 157 VISCASVALADAGIMMYDLVASVSVSCLG-------KNLLIDPVLEEESYQDGSLMIACM 209
++ AS A+ADAGI M L V+ LG K ++IDP LEEE D +M+ M
Sbjct: 155 GLTVASAAVADAGIEMAGLGVGGVVASLGADEKQGKKRVVIDPSLEEEKESDVKVMVGTM 214
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASD 257
P+ +VT + +TGE ++ +AS + ++ L E A +
Sbjct: 215 PALSKVTNVWLTGEIEVDEACNMIEQAFEASKQTHSVVAEALVEGAGE 262
>gi|348678286|gb|EGZ18103.1| hypothetical protein PHYSODRAFT_504652 [Phytophthora sojae]
Length = 713
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 108/242 (44%), Gaps = 20/242 (8%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--------- 84
V LR D R + R R G + GSAY E GNTKV+ V+GPRE +
Sbjct: 24 VAGLRVDGRRSEEVRRIRTRFGLFSRVDGSAYYEQGNTKVVAVVYGPRELRVGPAGGAAA 83
Query: 85 ----KAMMYSNI---GRLNCNVSYTTFAT----PVRGQGSDHKDFSSMLHKALEGAIILE 133
SN +NC + FAT P R + S + + E + +
Sbjct: 84 VGTGSGNAASNTQPRAVVNCEFTQAAFATSERKPQRSGDRKKVEMSLAVKQIFEACVQTQ 143
Query: 134 TFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPV 193
+P++ +D+F VL + G +LP I+ ++AL DAGI + D V + S L + +L D
Sbjct: 144 LYPRSQIDIFVQVLHADGGELPASINAITLALIDAGIALNDFVVASSAGYLQQTMLCDLN 203
Query: 194 LEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
EE + +++A P ++ L + + F M++ + ++ ++++ L
Sbjct: 204 YAEEVARAPQVVMALNPRTQKLNLLQMECKLPLELFESLMEVATEGCNQIYDLLQNALPC 263
Query: 254 AA 255
AA
Sbjct: 264 AA 265
>gi|85108995|ref|XP_962696.1| hypothetical protein NCU08026 [Neurospora crassa OR74A]
gi|28924307|gb|EAA33460.1| conserved hypothetical protein [Neurospora crassa OR74A]
gi|39979134|emb|CAE85508.1| conserved hypothetical protein [Neurospora crassa]
Length = 286
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 125/280 (44%), Gaps = 52/280 (18%)
Query: 20 PTRKTRPPIFSGSDVDWLRPDSRGFH--QCRPA------FFRTGAVNSASGSAYAEF--- 68
P T PPI+ D S GF + RPA + +TG SASGSAY E
Sbjct: 10 PVGTTNPPIYD----DAPEKQSEGFKVTRSRPANVIRKMYLKTGVTPSASGSAYLEIESS 65
Query: 69 GN----TKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVR-GQGSD--HKDFSSM 121
GN K+ SV GPR ++ +S L+ +V + FAT R G D +D +
Sbjct: 66 GNGGSGLKLSCSVHGPRALPRSTPFSPHIILSTHVKFAPFATKQRRGYIRDPIERDLGTH 125
Query: 122 LHKALEGAIILETFPKTTVDVFALVLESGGSD-----------------LPVVISCASVA 164
L AL G+II + +PK+ VD+ ++E G D L I+ AS A
Sbjct: 126 LETALRGSIIADRWPKSGVDIIISIVE-GEQDRETSKAQGIEAWDTMNALSGCITVASAA 184
Query: 165 LADAGIMMYDLVASVSVSCLGKN--------LLIDPVLEEESYQDGSLMIACMPSRYEVT 216
LADAGI D VA V+ L ++ +++DP+ E + IA +P+R EVT
Sbjct: 185 LADAGIDCVDTVAG-GVAALVQDAGNDAAPSIVVDPIPSEHEKVLAACCIAYLPTRQEVT 243
Query: 217 QLTVTGEWSTPHFNEAMQLC---LDASAKLGKIMRSCLKE 253
L G+ + QL + AS +++ CL E
Sbjct: 244 NLWFKGDLPASDMDVYTQLIEKGIQASKSANRVLVDCLNE 283
>gi|357017365|gb|AET50711.1| hypothetical protein [Eimeria tenella]
Length = 299
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 115/237 (48%), Gaps = 17/237 (7%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIG 93
V+ R D R + RP +T ++ SASGSA+ GNTKV ++FGPR + ++ + + G
Sbjct: 40 VNGRRRDGRLPEEVRPMHLQTLSLGSASGSAFVSVGNTKVYCAIFGPRSAGRSDL-QDRG 98
Query: 94 RLNCNVSYTTFATPVRGQGSD-HKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
+ + + F G + + +LH+AL+ ++LE +PK+ ++V + LE G
Sbjct: 99 FIKVDYRGSPFFQRSSADGGETQEQLLLLLHQALDSCVLLERYPKSVLEVSFMFLEEDGG 158
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCL---------GKNLLIDPVLEE----ESY 199
L ++CA +ALADAG+ +D++ S + + +D E +
Sbjct: 159 ALAAALTCAGLALADAGVECHDIITGASAFAFTYKDSSGTPHQAVCLDLDASEYAVYRHF 218
Query: 200 QD-GSLMIACMPSRYEVTQLTVTGEW-STPHFNEAMQLCLDASAKLGKIMRSCLKEA 254
D ++ + P+ + L G + P + LC A ++G+ +R+CLK A
Sbjct: 219 ADFTAIHVGFCPALNSICCLHCRGPLIAGPSGEQLFSLCEAACGEIGREVRTCLKRA 275
>gi|307174738|gb|EFN65093.1| Exosome complex exonuclease RRP41 [Camponotus floridanus]
Length = 274
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 92/189 (48%), Gaps = 24/189 (12%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR-- 94
LR D R + R R G A GSAY E GNTKV+ +V+GP + K SNI R
Sbjct: 13 LRSDGRRALELRQIRLRMGVFGQADGSAYIEHGNTKVLAAVYGPHQPK-----SNISRNS 67
Query: 95 ----LNCNVSYTTFA-----TPVRGQGS-DHKDFSSMLHKALEGAIILETFPKTTVDVFA 144
+NC S F+ R +G ++ S+ L A+E I LE +P++ +D+F
Sbjct: 68 TKAFVNCQYSMAVFSFTSGERKRRPRGDWKSQERSAQLRHAMEAIIHLELYPRSQIDIFV 127
Query: 145 LVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSL 204
VL+ GSD ++ +++AL DAGI + + +VS + K L E +D +L
Sbjct: 128 EVLQVDGSDYCASVNASTLALIDAGIPIKNYAVGCTVSLINK-------LTTEEEEDKTL 180
Query: 205 MIACMPSRY 213
+ + +
Sbjct: 181 ATGVLDANF 189
>gi|153791339|ref|NP_001093283.1| mRNA transport regulator 3 [Bombyx mori]
gi|95103116|gb|ABF51499.1| mRNA transport regulator 3 [Bombyx mori]
Length = 268
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 82/155 (52%), Gaps = 4/155 (2%)
Query: 53 RTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQ- 111
RT V+ A GSAY E TKV+ SVF PRE + +G+L C V + F+ P + +
Sbjct: 20 RTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYCEVKFAPFSCPRKRRP 79
Query: 112 ---GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADA 168
+ K S L +ALE A+ FP +DV +LE GS L I+ A +ALA+A
Sbjct: 80 YVPDVEEKALSVALRQALEPAVCRHFFPDYQIDVLIYILEHDGSCLAAAINAAGLALANA 139
Query: 169 GIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGS 203
+ M+D++ S SV+ +G + IDP EE S
Sbjct: 140 AVPMFDIITSCSVAVIGHQMFIDPPEIEEHIAKNS 174
>gi|383414445|gb|AFH30436.1| exosome complex component MTR3 [Macaca mulatta]
Length = 272
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 113/225 (50%), Gaps = 19/225 (8%)
Query: 46 QCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI------------G 93
+ RP + R G ++ A GSAY E G TKV+ +V GPR+++ G
Sbjct: 35 RLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGSGGEAPAALRG 94
Query: 94 RLNCNVSYTTFATPVRGQ---GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
RL C+ FA R G + ++ + L +ALE A+ L +P+ ++V AL+LE G
Sbjct: 95 RLLCDFRRAPFAGRRRRAPPGGGEERELALALQEALEPAVRLGRYPRAQLEVSALLLEDG 154
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCL---GKNLLIDPVLEEESYQDGSLMIA 207
GS L ++ A++ALADAG+ MYDLV +S L+DP EE L +A
Sbjct: 155 GSALAAALTAAALALADAGVEMYDLVVGCGLSLAPGPAPTWLLDPTRLEEERAAAGLTVA 214
Query: 208 CMPSRYEVTQLTVTGEWST-PHFNEAMQLCLDASAKLGKIMRSCL 251
MP +V L +GE + EA++L L+ +L +++ L
Sbjct: 215 LMPVLNQVAGLLGSGEGGLIESWAEAVRLGLEGCQRLYPVLQQSL 259
>gi|403349665|gb|EJY74273.1| RNase PH [Oxytricha trifallax]
Length = 252
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 107/232 (46%), Gaps = 11/232 (4%)
Query: 32 SDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK------ 85
+D LR + R + R + G + + SGSA E GNTKV+ + GP + +
Sbjct: 8 NDESTLRMNGRKLLEIRDIKCQLGVMKNTSGSALFEIGNTKVVAFLQGPHQITQRQAQSL 67
Query: 86 AMMYSNIGRLNCNVSYTTF-ATPVRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVD 141
+ SN G LN N T F A R + + K+F+ M+ E I L+ +P++ +D
Sbjct: 68 GVNQSNRGILNVNFFVTNFSAIEHRADVKKDAKMKEFTRMIKSVFEQVIQLDLYPRSQLD 127
Query: 142 VFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQD 201
+ VLES G + S+AL D GI M D V + + LG +ID + +EE Q+
Sbjct: 128 LQVFVLESDGGYRSAAFNAVSMALMDGGIAMKDFVVATTAGLLGNVGVIDLIYQEEKKQN 187
Query: 202 GSLMIACMPSRYEVTQLTVT-GEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
++ + ++ + + + F + M + + + ++ M+ ++
Sbjct: 188 CEFVLVHLQKAQKIAYVNLNCNKIRLSDFEKLMNISIQSCDQIANTMKKAIR 239
>gi|453081530|gb|EMF09579.1| hypothetical protein SEPMUDRAFT_166241 [Mycosphaerella populorum
SO2202]
Length = 319
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 86/286 (30%), Positives = 122/286 (42%), Gaps = 51/286 (17%)
Query: 20 PTRKTRPPIFS-GSDVDWLRP-DSRGFHQCRPAFFRTGAVNSASGSAYAEF--------- 68
P T PP+FS D +P SR + R F RTG V SASGSAY E
Sbjct: 11 PAGGTAPPVFSLPRDTQITKPTRSRKPDEHRKIFLRTGVVPSASGSAYYEISPHVSEASK 70
Query: 69 -------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG---QGSDHKDF 118
N K+ +V GPR + +S L+ +V + FAT VR + + +D
Sbjct: 71 QFSTPLSSNLKISCTVHGPRPLPRNAAFSPNLLLSTHVKFAPFATRVRRGYVRDASERDL 130
Query: 119 SSMLHKALEGAIILETFPKTTVDVFALVLE---------------SGG----SDLPVVIS 159
L AL G II E +PK +V VLE +GG S L I+
Sbjct: 131 GVHLETALRGVIIGERWPKAGCEVVITVLEGEEDGFWADASEGGKAGGWGMMSVLAGCIT 190
Query: 160 CASVALADAGIMMYDLV-----ASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYE 214
AS AL DAGI DLV A V G+ L+DP E+ + + ++ + SR E
Sbjct: 191 VASAALCDAGIDCVDLVSGGVAALVKTESGGEEYLLDPSPPEQDIK-AACVVGYLQSRDE 249
Query: 215 VTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDEQE 260
+T++ W + +D++ K + R+ L +A + E
Sbjct: 250 ITEM-----WMKGDSGAESETLIDSAVKAATLTRTVLADAVREATE 290
>gi|378726312|gb|EHY52771.1| ribonuclease PH [Exophiala dermatitidis NIH/UT8656]
Length = 310
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 110/245 (44%), Gaps = 39/245 (15%)
Query: 20 PTRKTRPPIF--SGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEF--------- 68
P T PP+F S S D + R ++ R F +TG + SA+GSAY E
Sbjct: 10 PAGTTSPPVFAPSNSTKDLRQTRQRKPNELRKIFLQTGVIPSATGSAYLELECPPRPKAA 69
Query: 69 -----GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQG----SDHKDFS 119
K+ SV GP+ + +S +L+ +V + FAT VR QG S +D S
Sbjct: 70 ILNTSSTIKLSCSVHGPKPLPRTASFSPNLQLSASVKFAPFATRVR-QGYIRDSTERDIS 128
Query: 120 SMLHKALEGAIILETFPKTTVDVFALVLE-----------SGGSDLPVVISCASV---AL 165
L AL+G II + +PK+ +D+ VLE SG V+ C +V AL
Sbjct: 129 MHLETALKGVIIPDRWPKSAIDIAVTVLEGEDDQCDGDRFSGIGLFNVLAGCINVAMAAL 188
Query: 166 ADAGIMMYD-LVASVSVSCLGK---NLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVT 221
ADA + D L A V GK +L+DP E S ++ +PSR EV ++
Sbjct: 189 ADARVDCLDVLAAGVGALVPGKEKPRMLLDPACTEHEEVQASCLVGYLPSRDEVVEVWSN 248
Query: 222 GEWST 226
G T
Sbjct: 249 GSVQT 253
>gi|302348936|ref|YP_003816574.1| exosome complex exonuclease 1 [Acidilobus saccharovorans 345-15]
gi|302329348|gb|ADL19543.1| Probable exosome complex exonuclease 1 [Acidilobus saccharovorans
345-15]
Length = 242
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 115/229 (50%), Gaps = 8/229 (3%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSN 91
D + R D R + RP + G +++A GSA +G TKV+ +V+GPRE +K + +
Sbjct: 10 DENGRRLDGRLPDEMRPVDMKVGVLSNADGSAIVSYGKTKVLAAVYGPREPLQKYTVLPD 69
Query: 92 IGRLNCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
L F+T R + + S +L +ALE +I E FP+T ++V+ VL+
Sbjct: 70 RASLFVRYHMAPFSTEERKSPVPTRREVEISKVLREALEPVVITELFPRTVIEVYVEVLQ 129
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
S G + AS+ALADAGI M LVA V++ + +++D E+++ + + +
Sbjct: 130 SDGGTRTASATAASLALADAGIPMRALVAGVAIGKVDNVVVLDLNEPEDNFGEADMPVVA 189
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKL----GKIMRSCLKE 253
P +T + G + + + + L A ++L + +RS ++E
Sbjct: 190 APDLGLITLFQLNGVMTVEETQKGLDMALKAISELVEKEKQTLRSSIEE 238
>gi|346326140|gb|EGX95736.1| 3' exoribonuclease [Cordyceps militaris CM01]
Length = 283
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 108/236 (45%), Gaps = 34/236 (14%)
Query: 20 PTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEF--------GNT 71
P+ T PP++ D+ + SR R + +TG SASGSAY EF
Sbjct: 10 PSGATVPPVYDDEDLVSTQ-RSRPETGIRAIYLKTGVTPSASGSAYLEFEPREGSSGSGM 68
Query: 72 KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG---QGSDHKDFSSMLHKALEG 128
K+ +V GPR ++ +S L+ +V Y FAT R + S +D S+ L AL G
Sbjct: 69 KLTCTVHGPRSLPRSAPFSPHMVLSTHVKYAPFATKQRRGYLRDSSERDLSTHLETALRG 128
Query: 129 AIILETFPKTTVDVFALVLE-----SGGSD-----------LPVVISCASVALADAGIMM 172
+I + +PK+ VDV ++E D L I+ AS A+ADAGI
Sbjct: 129 TLIADRWPKSGVDVIVTIIEGELTRQAAQDQGIESWEMMNVLSGCITVASAAIADAGIDC 188
Query: 173 YDLVASVSVSCLGKN------LLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTG 222
D VA + + K+ +++DPV E + +A +PSR E+T L G
Sbjct: 189 VDTVAGGVAAMVTKDENDEPTIVLDPVPSEHGQVLAACCVAYLPSRDEITNLWFKG 244
>gi|195128573|ref|XP_002008737.1| GI13661 [Drosophila mojavensis]
gi|193920346|gb|EDW19213.1| GI13661 [Drosophila mojavensis]
Length = 329
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS-NIGRLNCNVSYTTFAT 106
R F R G + + GSAY E+GNTK++ V PRE ++ + ++G +NC V++ FAT
Sbjct: 46 RSTFIRAGVLTTVRGSAYMEYGNTKLMAIVAPPRELVRSSAHRVSMGVINCYVNFAAFAT 105
Query: 107 -PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVAL 165
+ K SML KALE + F +D+ L+L+ G L I+C VAL
Sbjct: 106 GDLESVPEREKHLGSMLTKALEPLVCRNEFLNFQLDIRVLILDDDGCLLSTAINCCGVAL 165
Query: 166 ADAGIMMYDLVASVSVSCLGKN-LLIDP 192
+ GI YDL+ + S +C+ + + I+P
Sbjct: 166 IECGISTYDLITA-STACIYRGYVFINP 192
>gi|452838914|gb|EME40854.1| hypothetical protein DOTSEDRAFT_178087 [Dothistroma septosporum
NZE10]
Length = 317
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 128/281 (45%), Gaps = 50/281 (17%)
Query: 20 PTRKTRPPIF-SGSDVDWLRPD-SRGFHQCRPAFFRTGAVNSASGSAYAEF--------- 68
P T PP+F + DV RP SR + R F RTG V SASGSAY E
Sbjct: 13 PPGGTAPPVFATAQDVKVERPSRSRNADEHRKIFLRTGVVPSASGSAYYEIPPQGSDAPS 72
Query: 69 -------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG---QGSDHKDF 118
K+ +V GPR + +S L ++ + FAT R + + +D
Sbjct: 73 KLLVPSASTLKISCTVHGPRPLPRNAAFSPNLLLTTHIKFAPFATRQRRGYVRDASERDL 132
Query: 119 SSMLHKALEGAIILETFPKTTVDVFALVLE---------------SGGSDLPVV----IS 159
L AL G II E +PK+ +V VLE +GG + V I+
Sbjct: 133 GVHLETALRGVIIGERWPKSGCEVIITVLEGEEDGWWGDAHSGTKAGGWGMMNVLAGCIT 192
Query: 160 CASVALADAGIMMYDLVASVSVSCL---GKNLLIDPVLEEESYQDGSLMIACMPSRYEVT 216
A ALADAGI D+V S V+ L G ++L+DP E+ + + ++ + SR EVT
Sbjct: 193 VACAALADAGIDCVDMV-SGGVAVLASNGNDVLLDPSPPEQDIK-AACVVGYLKSRDEVT 250
Query: 217 QLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASD 257
++ V G+ +EA+ +D++ K + R+ L +A +
Sbjct: 251 EMWVKGDAGV--HSEAL---IDSAVKAATLTRTVLADAVKE 286
>gi|402219270|gb|EJT99344.1| ribosomal protein S5 domain 2-like protein, partial [Dacryopinax
sp. DJM-731 SS1]
Length = 236
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 113/226 (50%), Gaps = 24/226 (10%)
Query: 20 PTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFG 79
P R T PP F S +R RP F TG V +ASGSAY E K++VSV+G
Sbjct: 11 PDRST-PPSFPSSQYS---KRTREPAAIRPIFLHTGLVPAASGSAYLESPPLKLVVSVYG 66
Query: 80 PRESKKAM-------------MYSNIGRLNCNVSYTTFATPVRG---QGSDHKDFSSMLH 123
PR+ K + YS G L+ ++ + FAT VR + ++ ++ S +
Sbjct: 67 PRQQKPSTSSASGVLPSLSSSAYSEKGTLSVSLKFAPFATRVRKAPLKETEDREISLRVR 126
Query: 124 KALEGAIILETFPKTTVDVFALVLES--GGSDLPV--VISCASVALADAGIMMYDLVASV 179
AL A++LE +PK+++DV+ VLES G D V I+ AS ALA AG+ M LV
Sbjct: 127 AALAPAVLLERYPKSSIDVYIHVLESDQGQGDALVCAAITAASAALAHAGVEMRGLVVGC 186
Query: 180 SVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWS 225
+ + +G +DP E G + + C+P+ +T + GE S
Sbjct: 187 AAARVGGVTYLDPEGETGETVKGGVGVGCLPALGSLTGIWQWGELS 232
>gi|405122610|gb|AFR97376.1| hypothetical protein CNAG_04839 [Cryptococcus neoformans var.
grubii H99]
Length = 268
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 115/228 (50%), Gaps = 14/228 (6%)
Query: 42 RGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSY 101
R + RP F +TG ++ A GS Y E G K+ SV+GPR G LN V +
Sbjct: 37 RTDQESRPIFLKTGLISQAHGSGYIEAGGVKIACSVYGPRPKPPPYSPQ--GTLNLEVKF 94
Query: 102 TTFAT-PVRGQGSDHKDF--SSMLHKALEGAIILETFPKTTVDVFALVLESG--GSDLPV 156
FA+ P R D + S++L + L + L PK+++DV+ LVLES + L
Sbjct: 95 APFASDPRRAPLRDTEPLPLSNLLTQLLLPTLHLHLLPKSSIDVYLLVLESDTLTNVLSA 154
Query: 157 VISCASVALADAGIMMYDLVASVSVSCLG-------KNLLIDPVLEEESYQDGSLMIACM 209
++ AS A+ADAGI M L +V+ +G + ++IDP LEEE D +M+ M
Sbjct: 155 GLTVASAAVADAGIEMAALGVGGAVASIGGDEKQGRRRVVIDPSLEEEKQSDVKVMVGTM 214
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASD 257
P+ ++T + +TGE ++ ++AS + I+ L E A +
Sbjct: 215 PALGKMTNVWLTGEAEVDEACNMIEQAIEASRETHSILAEALVEGAGE 262
>gi|424811892|ref|ZP_18237132.1| ribosomal RNA-processing protein RRP41/SKI6 [Candidatus
Nanosalinarum sp. J07AB56]
gi|339756114|gb|EGQ39697.1| ribosomal RNA-processing protein RRP41/SKI6 [Candidatus
Nanosalinarum sp. J07AB56]
Length = 237
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 104/225 (46%), Gaps = 4/225 (1%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSN 91
D D R D R + R + +A GSA E GNT+V+ SVFGP+E K + +
Sbjct: 10 DEDGNRLDGRKRDELRETSMEVDVLENAEGSARVETGNTRVVASVFGPQELHPKHLQEPD 69
Query: 92 IGRLNCNVSYTTFATPVR---GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ + F+ R G K+ + KAL A+ L FP +D+ ++E
Sbjct: 70 RAVIKMRYNMAPFSVDDRMRPGPNRRAKEIGLVSKKALAPAVDLHEFPNAGIDISMEIIE 129
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
S G I+ AS+ALADAGI M LV++ + + +++D E+ + + + IA
Sbjct: 130 SDGGTRVTGINAASLALADAGIPMEGLVSACAAGVVDDTVVLDVDGPEDKHGNADIPIAT 189
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
+ EVT L + G+ EA+QL L ++ R L E
Sbjct: 190 VNGGEEVTLLQMDGDIPPGTVEEAVQLAETGCENLHRMQREALTE 234
>gi|354547529|emb|CCE44264.1| hypothetical protein CPAR2_400650 [Candida parapsilosis]
Length = 241
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 89/168 (52%), Gaps = 6/168 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAV-NSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIGR 94
LR D R +++ R R NS+ GS+Y E GNTKVI +V GP E +A M +
Sbjct: 9 LRIDGRRWNELRRFECRVNTHPNSSDGSSYVEQGNTKVICTVQGPTEPISRAQMNQDKAN 68
Query: 95 LNCNVSYTTFATPVRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
L N++ F+T R + S + + + L + E +++L +P+T + + VL
Sbjct: 69 LEVNLTIANFSTFERKKRSKSEKRMVELRTTLERTFEQSVLLHLYPRTNITINVQVLSQD 128
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEES 198
G L + + ++A+ DAGI MYD V+SVS + ++ L+D EES
Sbjct: 129 GGMLAAITNAITLAIIDAGIAMYDYVSSVSCGLIDQSPLLDLNNLEES 176
>gi|357626143|gb|EHJ76339.1| putative exosome complex exonuclease RRP41 [Danaus plexippus]
Length = 214
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 8/187 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R ++ R + G GSAY E GNTKV+ +V+GP ++ K+ + +N
Sbjct: 12 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKSSAEGVVVN 71
Query: 97 CNVSYTTFATPVRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
C S TF+T R D K + S L +AL AI E +P++ +D++ VL++ G
Sbjct: 72 CQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSQIDIYVEVLQADGG 131
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLE----EESYQDGSLMIAC 208
++ +++AL DAGI + V S S S + + +P+L+ EE+ +L +A
Sbjct: 132 AYCASVNASTLALIDAGIPLKAYVCSCSASMAWLDGVPEPLLDVGHVEEAAGGVTLTVAS 191
Query: 209 MPSRYEV 215
+PS E+
Sbjct: 192 LPSTGEL 198
>gi|367045422|ref|XP_003653091.1| hypothetical protein THITE_2115125 [Thielavia terrestris NRRL 8126]
gi|347000353|gb|AEO66755.1| hypothetical protein THITE_2115125 [Thielavia terrestris NRRL 8126]
Length = 286
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 124/275 (45%), Gaps = 42/275 (15%)
Query: 20 PTRKTRPPIFSGS---DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNT----- 71
P T PP+F + ++ ++ SR + R F +TG SASGSAY E +
Sbjct: 10 PAGATIPPVFDDAGFQELKTVKTRSRPPNVLRKMFLKTGVTPSASGSAYLEITTSGKPGV 69
Query: 72 ---KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG---QGSDHKDFSSMLHKA 125
K+ SV GPR ++ +S L+ +V Y FAT R + +D L A
Sbjct: 70 SGLKLSCSVHGPRSLPRSSPFSPHMVLSTHVKYAPFATKQRRGYLRDPSERDLGIHLETA 129
Query: 126 LEGAIILETFPKTTVDVFALVLE---------SGGSD-------LPVVISCASVALADAG 169
L GAII + +PK+ VD+ ++E S G + L I+ AS ALADAG
Sbjct: 130 LRGAIIADRWPKSGVDIIISIIEGDQDRESSQSQGDEVWDMMNALSGCITVASAALADAG 189
Query: 170 IMMYDLVASVSVSCLGKN--------LLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVT 221
I D VA V+ L ++ +++DP+ E + +A +P+R EVT L
Sbjct: 190 IDCVDTVAG-GVAALVQDAGDDSKPSIVVDPLPSEHERILAACCVAYLPTRDEVTNLWFR 248
Query: 222 GEWSTPH---FNEAMQLCLDASAKLGKIMRSCLKE 253
G+ + ++ + AS +++ CL E
Sbjct: 249 GDLPASDMDLYTSLVEQGIQASKNANRVLVECLSE 283
>gi|351713983|gb|EHB16902.1| Exosome complex exonuclease RRP41 [Heterocephalus glaber]
Length = 256
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 104/240 (43%), Gaps = 23/240 (9%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK------------- 84
R D R + R R G A GSAY E GNTK + V+GP E+
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEASLVYLSFLFQIRGS 72
Query: 85 KAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSS-----MLHKALEGAIILETFPKTT 139
++ + +NC S TF+T R + H D S L + E AI+ + P++
Sbjct: 73 RSRALPDRALVNCQYSSATFSTGERKR-RPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQ 131
Query: 140 VDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESY 199
+D++ VL++ G ++ A++A+ DAGI M D V + S + L D EE+
Sbjct: 132 IDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAA 191
Query: 200 QDGSLMIACMPSRYEVTQLTVTGEWSTPH----FNEAMQLCLDASAKLGKIMRSCLKEAA 255
L +A +P+ ++ L + H A Q D L +++R + EA+
Sbjct: 192 GGPQLALALLPASGQIALLEMDARLHEDHLECVLEAAAQAARDVHTLLDRVVRQHVHEAS 251
>gi|149236726|ref|XP_001524240.1| exosome complex exonuclease RRP41 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146451775|gb|EDK46031.1| exosome complex exonuclease RRP41 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 244
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 85/161 (52%), Gaps = 6/161 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAV-NSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGR 94
LR D R +++ R R NS+ GS+Y E GNTKVI +V GP E + +A M +
Sbjct: 12 LRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVICTVIGPMEPTSRAQMNQDRAN 71
Query: 95 LNCNVSYTTFATPVRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ N++ F+T R + S + + + L + E I+L +P+T + + VL
Sbjct: 72 VEVNLTIANFSTFERKKRSKTEKRLVELRTTLERTFEQLILLHLYPRTNITINVQVLNQD 131
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLID 191
G L V + ++AL DAGI MYD V+S+S ++ L+D
Sbjct: 132 GGMLAAVTNSITLALMDAGIAMYDYVSSISCGLHDQSPLLD 172
>gi|336471367|gb|EGO59528.1| hypothetical protein NEUTE1DRAFT_79727 [Neurospora tetrasperma FGSC
2508]
gi|350292464|gb|EGZ73659.1| hypothetical protein NEUTE2DRAFT_108469 [Neurospora tetrasperma
FGSC 2509]
Length = 286
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 124/278 (44%), Gaps = 48/278 (17%)
Query: 20 PTRKTRPPIFSGSDVDWLRPDSRGFHQCRPA------FFRTGAVNSASGSAYAEF---GN 70
P T PPI+ D + + + RPA + +TG SASGSAY E GN
Sbjct: 10 PVGTTNPPIYD--DAPEKQSEGVKVTRSRPANVIRKMYLKTGVTPSASGSAYLEIESSGN 67
Query: 71 ----TKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVR-GQGSD--HKDFSSMLH 123
K+ SV GPR ++ +S L+ +V + FAT R G D +D + L
Sbjct: 68 GGSGLKLSCSVHGPRALPRSTPFSPHIILSTHVKFAPFATKQRRGYIRDPIERDLGTHLE 127
Query: 124 KALEGAIILETFPKTTVDVFALVLESGGSD-----------------LPVVISCASVALA 166
AL G+II + +PK+ VD+ ++E G D L I+ AS ALA
Sbjct: 128 TALRGSIIADRWPKSGVDIIISIVE-GEQDRETSKAQGIEAWDTMNALSGCITVASAALA 186
Query: 167 DAGIMMYDLVASVSVSCLGKN--------LLIDPVLEEESYQDGSLMIACMPSRYEVTQL 218
DAGI D VA V+ L ++ +++DP+ E + IA +P+R EVT L
Sbjct: 187 DAGIDCVDTVAG-GVAALVQDAGNDAAPSIVVDPIPSEHEKVLAACCIAYLPTRQEVTNL 245
Query: 219 TVTGEWSTPHFNEAMQLC---LDASAKLGKIMRSCLKE 253
G+ + QL + AS +++ CL E
Sbjct: 246 WFKGDLPASDMDVYTQLIEKGIQASKSANRVLVDCLNE 283
>gi|302801728|ref|XP_002982620.1| hypothetical protein SELMODRAFT_155148 [Selaginella moellendorffii]
gi|300149719|gb|EFJ16373.1| hypothetical protein SELMODRAFT_155148 [Selaginella moellendorffii]
Length = 242
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 105/222 (47%), Gaps = 5/222 (2%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRL 95
LR D R + R G V +A+GSA E GNTKVI +V+GP E ++ + +
Sbjct: 9 LRLDGRRPLEMRQLHAELGVVENANGSAMFEMGNTKVIAAVYGPHEVHNRSQQLWDRALV 68
Query: 96 NCNVSYTTFAT----PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C S F+T + S ++ + LE AI+ PK+ +D++ VL++ G
Sbjct: 69 RCEYSMAAFSTGDRRRKGKGNRRSTEISLVIRQTLEAAILTNLMPKSQIDIYVQVLQADG 128
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS 211
I+ A++ALA+AGI M DLVAS + L L+D E+S + +A P
Sbjct: 129 GTRSACINAAALALAEAGIPMRDLVASCAAGYLNGTPLLDLNYVEDSGGGPDVTVALFPK 188
Query: 212 RYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
+V+ L + + HF QL + + + MR L E
Sbjct: 189 VDKVSLLQMDSKLPLEHFENVFQLAAEGAKAAARYMREVLME 230
>gi|322709903|gb|EFZ01478.1| 3' exoribonuclease [Metarhizium anisopliae ARSEF 23]
Length = 283
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 122/274 (44%), Gaps = 41/274 (14%)
Query: 20 PTRKTRPPIFSGSDVDWL-RP-DSRGFHQCRPAFFRTGAVNSASGSAYAEFGNT------ 71
P T PP++ D D + +P +R + RP + +TG SASGSAY E +
Sbjct: 10 PGGPTNPPVY---DEDLIIKPVRTRNNNDVRPFYLKTGVTPSASGSAYLEIDQSTGSGFG 66
Query: 72 -KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG---QGSDHKDFSSMLHKALE 127
K +V GPR ++ +S ++ +V Y FAT R + + +D S L AL
Sbjct: 67 MKFTCTVHGPRSLPRSAPFSPHMVISTHVKYAPFATRQRKGYLRDASERDLSIHLETALR 126
Query: 128 GAIILETFPKTTVDVFALVLESGGSDLPVV----------------ISCASVALADAGIM 171
GA+I + +PK+ V+V ++E S + I+ AS A+ADAGI
Sbjct: 127 GAVIADRWPKSGVEVVVTIVEGDVSRQTTIDEGHEEWNTMSILSGCITVASAAIADAGID 186
Query: 172 MYDLVAS-----VSVSCLGKN--LLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEW 224
D+ A V +GK L++DP + E + +A +P+R E+T L G
Sbjct: 187 SVDVAAGGVAALVQDEGIGKEPVLVMDPSVSEHKTILAACCVAYLPARDEITNLWYKGSS 246
Query: 225 STPHFNEAMQL---CLDASAKLGKIMRSCLKEAA 255
H L + AS GK + L EAA
Sbjct: 247 CGSHLATYRSLVGRAVLASKGAGKAISVSLNEAA 280
>gi|322692770|gb|EFY84660.1| 3' exoribonuclease [Metarhizium acridum CQMa 102]
Length = 283
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 121/273 (44%), Gaps = 39/273 (14%)
Query: 20 PTRKTRPPIFSGSDVDWLRP-DSRGFHQCRPAFFRTGAVNSASGSAYAEFGNT------- 71
P T PP++ + ++P +R + RP + +TG SASGSAY E +
Sbjct: 10 PGGPTNPPVYDEDSI--IKPVRTRNNNDVRPFYLKTGVTPSASGSAYLEIDQSTGSGFGM 67
Query: 72 KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG---QGSDHKDFSSMLHKALEG 128
K +V GPR ++ +S ++ +V Y FAT R + + +D S L AL G
Sbjct: 68 KFTCTVHGPRSLPRSAPFSPHMVISTHVKYAPFATRQRRGYLRDASERDLSIHLETALRG 127
Query: 129 AIILETFPKTTVDVFALVLE----------------SGGSDLPVVISCASVALADAGIMM 172
A+I + +PK+ V+V ++E + S L I+ AS A+ADAGI
Sbjct: 128 AVIADRWPKSGVEVVVTIVEGDVTRQTTIDEGLQEWNTMSILSGCITVASAAIADAGIDS 187
Query: 173 YDLVAS-----VSVSCLGK--NLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWS 225
D+ A V +GK L++DP + E + +A +P+R E+T L G
Sbjct: 188 VDVAAGGVAALVQDEGIGKEQELVVDPAVSEHKTILAACCVAYLPARNEITNLWYKGSLC 247
Query: 226 TPHFNEAMQL---CLDASAKLGKIMRSCLKEAA 255
L + AS GK + L EAA
Sbjct: 248 GSQLATYRSLVGRAVLASKGAGKAISVSLNEAA 280
>gi|448529118|ref|XP_003869792.1| hypothetical protein CORT_0E00700 [Candida orthopsilosis Co 90-125]
gi|380354146|emb|CCG23659.1| hypothetical protein CORT_0E00700 [Candida orthopsilosis]
Length = 244
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 86/161 (53%), Gaps = 6/161 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSAS-GSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGR 94
LR D R +++ R R S+S GS+Y E GNTKVI +V GP E S +A M +
Sbjct: 12 LRIDGRRWNELRRFECRINTHPSSSDGSSYVEQGNTKVICTVQGPIEPSSRAQMNQDKAN 71
Query: 95 LNCNVSYTTFATPVRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
L N++ F+T R + S + + + L + E +I+L +P+T + + VL
Sbjct: 72 LEVNLTIANFSTFERKKRSKSEKRMVELRTTLERTFEQSILLHLYPRTNITINVQVLSQD 131
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLID 191
G L + + ++A+ DAGI MYD V+SVS ++ L+D
Sbjct: 132 GGMLAAITNSITLAIIDAGIAMYDYVSSVSCGLFDQSPLLD 172
>gi|448099279|ref|XP_004199107.1| Piso0_002516 [Millerozyma farinosa CBS 7064]
gi|359380529|emb|CCE82770.1| Piso0_002516 [Millerozyma farinosa CBS 7064]
Length = 244
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 91/168 (54%), Gaps = 6/168 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAV-NSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGR 94
LR D R +++ R R SA GS+Y E GNTKVI V GP+E S K+ S+
Sbjct: 12 LRVDGRRWNELRRFDCRINTHPQSADGSSYVEQGNTKVICMVSGPKEPSNKSQQNSSGAV 71
Query: 95 LNCNVSYTTFATPVRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ NVS +F+T R + S ++ + ++ L + E +II + +P+TT+ V VL
Sbjct: 72 IEFNVSIASFSTTNRKKRSKNEKRTIELNTTLERTFEQSIIRKLYPRTTISVNLHVLAQD 131
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEES 198
G L + + +++AL DAGI MYD ++ +S + L+D EES
Sbjct: 132 GGLLAALTNASTLALIDAGISMYDYISGISAGLHDISPLLDLNTLEES 179
>gi|440466166|gb|ELQ35448.1| 3' exoribonuclease family protein [Magnaporthe oryzae Y34]
gi|440480663|gb|ELQ61316.1| 3' exoribonuclease family protein [Magnaporthe oryzae P131]
Length = 302
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 112/256 (43%), Gaps = 54/256 (21%)
Query: 20 PTRKTRPPIFSGS---DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNT----- 71
P T PP+F D R SR + R F +TG SASGSAY E N
Sbjct: 10 PVGTTLPPVFFDEPIPDKPGPRTRSRPPNAIRKIFLKTGITPSASGSAYLEIENPVVPGK 69
Query: 72 ---------KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG---QGSDHKDFS 119
K+ +V GPR ++ +S L+ ++ Y FAT R + S +D S
Sbjct: 70 EGETSTSGLKLSCTVHGPRALPRSTPFSPHIILSTHIKYAPFATKQRRGYIRDSTERDLS 129
Query: 120 SMLHKALEGAIILETFPKTTVDVFALVLESGGSD--LPV------------------VIS 159
L AL G II + +PK+ VDV V+E G D LP+ I+
Sbjct: 130 VHLETALRGVIIADRWPKSGVDVIVSVIE-GDQDRRLPLQDSGSGEEAWSTMSVLSGCIT 188
Query: 160 CASVALADAGIMMYDLVASVSVSCL------------GKNLLIDPVLEEESYQDGSLMIA 207
AS ALADAGI D+VA V+ L G ++++DPV E + +A
Sbjct: 189 VASAALADAGIDCVDMVAG-GVAALVRDDSDGAKSVEGGSIVVDPVPAEHDKIVAACCVA 247
Query: 208 CMPSRYEVTQLTVTGE 223
+P+R EVT L G+
Sbjct: 248 YLPNRDEVTNLWFKGD 263
>gi|452978876|gb|EME78639.1| hypothetical protein MYCFIDRAFT_56888 [Pseudocercospora fijiensis
CIRAD86]
Length = 317
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 127/285 (44%), Gaps = 50/285 (17%)
Query: 20 PTRKTRPPIF-SGSDVDWLRPD-SRGFHQCRPAFFRTGAVNSASGSAYAEF--------- 68
P T PP+F + D RP +R + R F RTG V SASGSAY E
Sbjct: 11 PAGGTAPPVFITPKDSQIQRPRRTRKPDEHRKIFLRTGVVPSASGSAYYEISPHPPTEAK 70
Query: 69 -------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG---QGSDHKDF 118
N K+ +V GPR + +S L +V + FAT R + S +D
Sbjct: 71 QFLTPDASNLKITCTVHGPRPLPRNAAFSPNLLLTTHVKFAPFATRQRRGYVRDSSERDL 130
Query: 119 SSMLHKALEGAIILETFPKTTVDVFALVLE---------------SGG----SDLPVVIS 159
L AL G II + +PK+ +V VLE +GG S L I+
Sbjct: 131 GVHLETALRGVIIGDRWPKSGCEVVITVLEGEEDGFWAEPSQGGKTGGWGMMSVLAGCIT 190
Query: 160 CASVALADAGIMMYDL----VASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEV 215
AS ALADAGI DL VA++ S G ++DP E+ + + ++ + SR E+
Sbjct: 191 VASAALADAGIDCVDLVSGGVAALVNSNGGHEYILDPSPPEQDIK-AACVVGYLQSRDEI 249
Query: 216 TQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDEQE 260
T++ + GE + EA L +D + K + R+ L +A + E
Sbjct: 250 TEMWMKGEAAA----EAETL-IDHAVKASVMTRTVLADAVKEAIE 289
>gi|389635235|ref|XP_003715270.1| 3' exoribonuclease [Magnaporthe oryzae 70-15]
gi|351647603|gb|EHA55463.1| 3' exoribonuclease [Magnaporthe oryzae 70-15]
Length = 302
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 112/256 (43%), Gaps = 54/256 (21%)
Query: 20 PTRKTRPPIFSGS---DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNT----- 71
P T PP+F D R SR + R F +TG SASGSAY E N
Sbjct: 10 PVGTTLPPVFFDEPIPDKPGPRTRSRPPNAIRKIFLKTGITPSASGSAYLEIENPVVSGK 69
Query: 72 ---------KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG---QGSDHKDFS 119
K+ +V GPR ++ +S L+ ++ Y FAT R + S +D S
Sbjct: 70 EGETSTSGLKLSCTVHGPRALPRSTPFSPHIILSTHIKYAPFATKQRRGYIRDSTERDLS 129
Query: 120 SMLHKALEGAIILETFPKTTVDVFALVLESGGSD--LPV------------------VIS 159
L AL G II + +PK+ VDV V+E G D LP+ I+
Sbjct: 130 VHLETALRGVIIADRWPKSGVDVIVSVIE-GDQDRRLPLQDSGSGEEAWSTMSVLSGCIT 188
Query: 160 CASVALADAGIMMYDLVASVSVSCL------------GKNLLIDPVLEEESYQDGSLMIA 207
AS ALADAGI D+VA V+ L G ++++DPV E + +A
Sbjct: 189 VASAALADAGIDCVDMVAG-GVAALVRDDSDGAKSVEGGSIVVDPVPAEHDKIVAACCVA 247
Query: 208 CMPSRYEVTQLTVTGE 223
+P+R EVT L G+
Sbjct: 248 YLPNRDEVTNLWFKGD 263
>gi|424814253|ref|ZP_18239431.1| ribosomal RNA-processing protein RRP41/SKI6 [Candidatus Nanosalina
sp. J07AB43]
gi|339757869|gb|EGQ43126.1| ribosomal RNA-processing protein RRP41/SKI6 [Candidatus Nanosalina
sp. J07AB43]
Length = 253
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 105/232 (45%), Gaps = 13/232 (5%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSN 91
D D R D R + R G + A GSA E GNT+VI SVFGP++ K + S+
Sbjct: 10 DDDGNRVDGRKADELRETEMEVGVLEEADGSAMVEIGNTRVIASVFGPQDLHPKHLQESD 69
Query: 92 IGRLNCNVSYTTFATPVR---GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ + F+ R G ++ + AL+ A+ LE FP +D+ V+E
Sbjct: 70 RAVIKMRYNMAPFSVDDRMSPGPNRRAQEIELVAKNALKPALELERFPTAGIDISMEVVE 129
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
S G I+ AS+ALADAGI M +V++ + + ++D +E+ + + IA
Sbjct: 130 SDGGTRVTGITAASLALADAGIPMKGMVSACAAGVVDDTPVLDVNGKEDKKGNADIPIAT 189
Query: 209 M---------PSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
+ VT L + G+ +T +E ++L KL + R +
Sbjct: 190 INRTDDDTESTEDDRVTLLQMDGDLTTEQVDECVELAKKGCEKLYRQQRRTI 241
>gi|170067610|ref|XP_001868550.1| mRNA transport regulator 3 [Culex quinquefasciatus]
gi|167863714|gb|EDS27097.1| mRNA transport regulator 3 [Culex quinquefasciatus]
Length = 173
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 73/141 (51%), Gaps = 11/141 (7%)
Query: 24 TRPPIFSGSDVDWLRPDSRGFHQC-------RPAFFRTGAVNSASGSAYAEFGNTKVIVS 76
TR F D L P + G +C R F + G V++A GSAY E GNTKVIVS
Sbjct: 23 TRDKAFQDRLEDVLDPTT-GNRKCNRQDTESRKYFMKLGVVSTAKGSAYLELGNTKVIVS 81
Query: 77 VFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQ---GSDHKDFSSMLHKALEGAIILE 133
VF PRE K + +G L C++ ++ FA R ++ + ++ + KAL+ +
Sbjct: 82 VFDPREIPKQNTFRELGELYCDLKFSPFACVHRKNPQTDAEERSLAAAMTKALQPVVCRH 141
Query: 134 TFPKTTVDVFALVLESGGSDL 154
FP +D+FA VLE GS L
Sbjct: 142 LFPNFQIDIFANVLEDDGSCL 162
>gi|260782066|ref|XP_002586113.1| hypothetical protein BRAFLDRAFT_109996 [Branchiostoma floridae]
gi|229271204|gb|EEN42124.1| hypothetical protein BRAFLDRAFT_109996 [Branchiostoma floridae]
Length = 153
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 63/104 (60%), Gaps = 3/104 (2%)
Query: 52 FRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG- 110
G V+ A+GSAY E G TKVI +V+GPRE + ++ GRL C + + TFA R
Sbjct: 12 LNAGVVSQATGSAYIEMGQTKVIAAVYGPREIARREEFTMKGRLCCELKFATFACRRRRQ 71
Query: 111 --QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
Q + KD + ++ +ALE A+ L+ FPK+ VDV+ VL+ GS
Sbjct: 72 HIQDNQEKDGALIVLQALEPAVCLDRFPKSQVDVYITVLQDDGS 115
>gi|409043264|gb|EKM52747.1| hypothetical protein PHACADRAFT_31210 [Phanerochaete carnosa
HHB-10118-sp]
Length = 266
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 108/224 (48%), Gaps = 8/224 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
D R D R + R +A GSA G T+V+VSVFGPRE+K ++ + +
Sbjct: 11 DGYRSDGRRQFELRDITMDLSQRGTADGSAMITHGLTQVLVSVFGPREAKMRSQTFHDRA 70
Query: 94 RLNCNVSYTTFATPVRGQGS--DHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
LN V+ F+T R + + D + +F+S + E + +P++ +D++ VL+
Sbjct: 71 VLNVEVNIAPFSTGERRKRNRGDKRILEFASAIKSTFEPVVQTNLYPRSQIDIYVHVLQQ 130
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLID-PVLEEESYQDGSLMIAC 208
G L I+ ++AL AGI + DLV +V+ + ++D LEE L +A
Sbjct: 131 DGGLLQAGINATTLALVSAGIPLLDLVCAVTGGVHSTSPMLDLTTLEENDIP--HLTVAI 188
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
MP ++T +T+ F + +L +A + K M+ ++
Sbjct: 189 MPKTGKITLVTMETRLHADRFADIFKLACEAGQVIHKEMKRTVR 232
>gi|428181007|gb|EKX49872.1| hypothetical protein GUITHDRAFT_104267 [Guillardia theta CCMP2712]
Length = 482
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 111/224 (49%), Gaps = 5/224 (2%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSN 91
D+ LR D R ++ R + G + +A+GSA GNTK++ +V GPRE + ++ +
Sbjct: 8 DLSGLRIDGRRPNELRKVVIKHGNLQNATGSAIFHHGNTKIVATVCGPRECTSRSKELHD 67
Query: 92 IGRLNCNV--SYTTFATPVRGQGSDH--KDFSSMLHKALEGAIILETFPKTTVDVFALVL 147
+ C+V S + ++ + D + S++ + E I FP++ +D+ ++
Sbjct: 68 RAVVTCSVIVSPSAYSHRRKRNRGDRVVAELESLVRQTFEELIFTSIFPRSQIDISVEIV 127
Query: 148 ESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIA 207
++ G V++ S+AL DAG+ + D + + V + LL+D EEES + L ++
Sbjct: 128 QADGPVRACVVNAVSMALIDAGLPIKDFLCACEVGYIDGQLLLDMNGEEESARGPDLYVS 187
Query: 208 CMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
MP + + + F +A+ L L+ ++ K+++ L
Sbjct: 188 YMPCQDAIVSTFLEPRLPLEVFGQALDLALNGCREMYKMLQLAL 231
>gi|426382769|ref|XP_004057973.1| PREDICTED: exosome complex component MTR3, partial [Gorilla gorilla
gorilla]
Length = 208
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 101/194 (52%), Gaps = 20/194 (10%)
Query: 23 KTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE 82
+++PP +D + P +R + RP + R G ++ A GSAY E G TKV+ +V GPR+
Sbjct: 13 ESQPPQLYAADEEEA-PGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQ 71
Query: 83 SKKAMMYSNI------------GRLNCNVSYTTFATPVRGQ---GSDHKDFSSMLHKALE 127
++ GRL C+ FA R G + ++ + L +ALE
Sbjct: 72 AEGGERGGGPAGAGGEAPAALRGRLVCDFRRAPFAGRRRRAPPGGCEERELALALQEALE 131
Query: 128 GAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCL--- 184
A+ L +P+ ++V AL+LE GGS L ++ A++ALADAG+ MYDLV +S
Sbjct: 132 PAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSLARGP 191
Query: 185 GKNLLIDPV-LEEE 197
L+DP LEEE
Sbjct: 192 APTWLLDPTRLEEE 205
>gi|398392563|ref|XP_003849741.1| hypothetical protein MYCGRDRAFT_16557, partial [Zymoseptoria
tritici IPO323]
gi|339469618|gb|EGP84717.1| hypothetical protein MYCGRDRAFT_16557 [Zymoseptoria tritici IPO323]
Length = 285
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 123/285 (43%), Gaps = 51/285 (17%)
Query: 20 PTRKTRPPIFSGS-DVDWLRPD-SRGFHQCRPAFFRTGAVNSASGSAYAEF--------- 68
P T PP+F+ D++ RP +R + R F RTG V SASGSAY E
Sbjct: 8 PPGGTAPPVFATPPDLNLSRPTRTRQPDEHRKIFLRTGVVPSASGSAYYEIPPETPSTSN 67
Query: 69 -------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG---QGSDHKDF 118
+ K+ +V GPR + +S L +V + FAT R + + +D
Sbjct: 68 DILVPSSSSLKITCTVHGPRPLPRNAAFSPNMLLTTHVKFAPFATRQRRGYVRDASERDL 127
Query: 119 SSMLHKALEGAIILETFPKTTVDVFALVLESGGSD--------------------LPVVI 158
L AL G II E +PK+ +V VLE G D L I
Sbjct: 128 GVHLETALRGVIIGERWPKSGCEVVITVLE-GEEDGWWGEAGKGGKGGGWGMMNVLAGCI 186
Query: 159 SCASVALADAGIMMYDLVASVSVSCLG---KNLLIDPVLEEESYQDGSLMIACMPSRYEV 215
+ AS ALADAGI DLV+ + G + ++DP E + + ++ + SR E+
Sbjct: 187 TVASAALADAGIDCVDLVSGGVAALTGDGKEGFVLDPSPSEHDIR-AACVVGYLQSRDEI 245
Query: 216 TQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDEQE 260
T+L + G+ ++ +D + K + R+ L EA + E
Sbjct: 246 TELWLKGD-----SGAQSEMLMDQAVKAATLTRTVLAEAVKEAAE 285
>gi|363756298|ref|XP_003648365.1| hypothetical protein Ecym_8266 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891565|gb|AET41548.1| Hypothetical protein Ecym_8266 [Eremothecium cymbalariae
DBVPG#7215]
Length = 246
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 109/224 (48%), Gaps = 10/224 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAV-NSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGR 94
+R D R +++ R + N+A GS+Y E GN K+I V GP+E + ++ + SN G
Sbjct: 12 IRIDGRRWNELRRFDYSINTHPNAADGSSYLEQGNNKIITLVKGPQEPNLRSQVNSNKGT 71
Query: 95 LNCNVSYTTFATPVRGQGSDHKD-----FSSMLHKALEGAIILETFPKTTVDVFALVLES 149
L V+ T F+ R Q + + L + E I+L+ + +T +D+ V++
Sbjct: 72 LTVTVNITKFSDIERSQAGHRNERRTLELQTALVRTFEKNIMLQLYSRTVIDIQIHVIQK 131
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLID-PVLEEESYQDGSLMIAC 208
G L +I+ ++AL DAGI MYD ++ VSV L+D LEE + S+ +A
Sbjct: 132 DGGLLGAMINGITLALIDAGIAMYDYISGVSVGLYDTTPLLDLNALEENALS--SVTLAV 189
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
+ +++ L V + M + + S ++ +M L+
Sbjct: 190 VGKSEKLSLLLVEDKVPLDRLESVMAIGIAGSHRIRDLMDKELR 233
>gi|403415678|emb|CCM02378.1| predicted protein [Fibroporia radiculosa]
Length = 1310
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 111/210 (52%), Gaps = 19/210 (9%)
Query: 26 PPIFSGSD--VDWL--RP-DSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGP 80
PPIF D V W +P R RP ++ A+GSAY E TK+ +V+GP
Sbjct: 18 PPIFEDGDSTVLWSAGKPRQGRASGDIRPICL----ISQANGSAYIETERTKIACAVYGP 73
Query: 81 RESKKAMMYSNIGRLNCNVSYTTFA-----TPVRGQGSDHKDFSSMLHKALEGAIILETF 135
R+SK + Y+ GRLN V + F+ P+R ++ + + +H+A+ ++ LE
Sbjct: 74 RQSKTTV-YNENGRLNVEVKFAPFSCTRRRAPIRD--AEDRSIAMQIHQAILPSVRLELL 130
Query: 136 PKTTVDVFALVLESGGSD--LPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPV 193
PK+T+D+F V+E+ G + + AS ALADAGI M LV S + S + + +DP
Sbjct: 131 PKSTIDIFITVIENDGIEGCIASGSLSASAALADAGIEMLGLVISCTASVICGEIWLDPT 190
Query: 194 LEEESYQDGSLMIACMPSRYEVTQLTVTGE 223
EE GSL+++ +P+ +T + +G
Sbjct: 191 EEEARAAAGSLIMSGIPALGTITHVWQSGH 220
>gi|339237159|ref|XP_003380134.1| exosome complex exonuclease MTR3 [Trichinella spiralis]
gi|316977092|gb|EFV60250.1| exosome complex exonuclease MTR3 [Trichinella spiralis]
Length = 232
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 77/139 (55%), Gaps = 13/139 (9%)
Query: 55 GAVNSASGSAYAEFGNTKVIVSVFGPRESKKA------MMYSNIGRLNCNVSYTTFATPV 108
V S GSAY E TK++ +V GPRE+ K+ M+ +N G+L +V + FA
Sbjct: 29 NCVESFRGSAYIEMNKTKILCTVIGPREAHKSSEDSMGMLLANCGKLTVSVRFAPFAKTP 88
Query: 109 RGQG-------SDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCA 161
R Q S+ ++ ++++ +A + +++E +PK + + +L+ G+ L ++C
Sbjct: 89 RLQRRRKEVALSEEQNLATLIQQAFDSVVLVERYPKAEIVLIISILQDSGNVLCASLNCC 148
Query: 162 SVALADAGIMMYDLVASVS 180
++AL AGI +YDL+ S S
Sbjct: 149 TMALVSAGIEIYDLLTSAS 167
>gi|148679539|gb|EDL11486.1| mCG3764 [Mus musculus]
Length = 253
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 120/246 (48%), Gaps = 35/246 (14%)
Query: 23 KTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE 82
+++PP ++ D P +R + RP + R G ++ A GSAY E G TKV+ +V GPR+
Sbjct: 13 ESQPPQLYAAEDDET-PAARDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQ 71
Query: 83 SKKAMMYSNI------------GRLNCNVSYTTFATPVR----GQGSDHKDFSSMLHKAL 126
++ S GRL C+ F+ R G G + ++ L +AL
Sbjct: 72 AEGGERGSGPAGAGGEAPAALRGRLLCDFRRAPFSGRRRRAPQGGGGEDRELGLALQEAL 131
Query: 127 EGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGK 186
E A+ L +P+ ++V AL+LE GG L ++ A++ALADAG+ MYD G
Sbjct: 132 EPAVRLGRYPRAQLEVSALLLEDGGCALAAALTAAALALADAGVEMYD---------SGG 182
Query: 187 NLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWS-TPHFNEAMQLCLDASAKLGK 245
L +P + +A MP +V L +GE T + +A++L L+ +L
Sbjct: 183 GLRPEP--------HPGITVALMPVLNQVAGLLGSGEGGQTESWTDAVRLGLEGCQRLYP 234
Query: 246 IMRSCL 251
+++ CL
Sbjct: 235 VLQQCL 240
>gi|393241477|gb|EJD48999.1| exosome component 4, partial [Auricularia delicata TFB-10046 SS5]
Length = 268
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 105/225 (46%), Gaps = 6/225 (2%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRL 95
LR D R H+ R + +A GSA G T + V GPRE + +++ + +
Sbjct: 11 LRSDGRRQHELRSLGMQLATQGAADGSALVSHGLTTALAVVHGPREGRLRSLTLHDRAVI 70
Query: 96 NCNVSYTTFATPVRGQGSDH----KDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ V F+ R + + ++ ++ + E A+ +P++ +D+ VL G
Sbjct: 71 DVTVIVAPFSQGERRKRTKGDRRTQELAAAVKATFEPAVQTHLYPRSQIDICIHVLHQDG 130
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS 211
L I+ ++AL +AG+ MYD V +VS + L+D EE+ L + +P
Sbjct: 131 GVLQACINATTLALMNAGVPMYDYVCAVSTGVFSTSALLDLTSLEET-DVPHLTVGVLPR 189
Query: 212 RYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAAS 256
+VT L++ F E +L ++A+A L + MRS ++E S
Sbjct: 190 SRKVTLLSMDTRLHVERFEEIFRLAVEAAAVLHEEMRSAVRETTS 234
>gi|299742531|ref|XP_001832547.2| exosome component 4 [Coprinopsis cinerea okayama7#130]
gi|298405226|gb|EAU89296.2| exosome component 4 [Coprinopsis cinerea okayama7#130]
Length = 263
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 106/221 (47%), Gaps = 8/221 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRL 95
R D R ++ R A GSA G T+V+VSV GPRE+K ++ + + +
Sbjct: 16 FRSDGRRQYELRDLSIDLSRHGEADGSALISHGLTQVLVSVHGPREAKMRSHTFHDRANI 75
Query: 96 NCNVSYTTFATPVRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
N V+ +F+T R + D + +F++ + E + +P++ +D++ +L+ G
Sbjct: 76 NVEVTVASFSTGERRKRLKGDKRILEFAATIKSTFEPVVRTSLYPRSQIDIYIQILQQDG 135
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLID-PVLEEESYQDGSLMIACMP 210
L I+ ++AL +AGI M D V ++S + ++D LEE + +A MP
Sbjct: 136 GTLQTCINGTTLALINAGIPMSDFVCAISGGVHSTSPMLDLTTLEENDVP--HVTVAVMP 193
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
+V +T+ F E + L DA+A L K M+ +
Sbjct: 194 KSKKVVLVTMETRLHVERFEEVLCLARDAAAVLHKEMKEAV 234
>gi|448103137|ref|XP_004199958.1| Piso0_002516 [Millerozyma farinosa CBS 7064]
gi|359381380|emb|CCE81839.1| Piso0_002516 [Millerozyma farinosa CBS 7064]
Length = 244
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 91/167 (54%), Gaps = 7/167 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAV-NSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGR 94
LR D R +++ R R SA GS+Y E GNTKVI V GP+E S K+ S+
Sbjct: 12 LRVDGRRWNELRRFDCRINTHPQSADGSSYVEQGNTKVICMVSGPKEPSNKSQQNSSGAV 71
Query: 95 LNCNVSYTTFATPVRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ NVS +F+T R + S ++ + ++ L + E +II + +P+TT+ V VL
Sbjct: 72 VEFNVSIASFSTTNRKKRSKNEKRIIELNTTLERTFEQSIIRKLYPRTTISVNLHVLAQD 131
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLID-PVLEE 196
G L + + +++AL DAGI MYD ++ +S + L+D LEE
Sbjct: 132 GGLLAALTNASTLALIDAGISMYDYISGISAGLHDVSPLLDLNTLEE 178
>gi|413948423|gb|AFW81072.1| hypothetical protein ZEAMMB73_833729 [Zea mays]
Length = 236
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 104/231 (45%), Gaps = 17/231 (7%)
Query: 29 FSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE--SKKA 86
+G VD RP+ + R G V A GSA E GNT+VI +V+GPRE +K
Sbjct: 7 LTGFRVDGRRPN-----EMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKGQ 61
Query: 87 MMYSNIGRLNCNVSYTTFATPVRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDV 142
+ S + C F+T R + D + + S ++ + +E +I+ P + +D+
Sbjct: 62 QVNSKEALVRCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPHSQIDI 121
Query: 143 FALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDG 202
+ VL S I+ A++ALADAGI M D+ S S L L+D E+S
Sbjct: 122 YVQVLRSA------CINAATLALADAGIPMRDIATSCSAGYLCSTPLLDLNYLEDSAGGS 175
Query: 203 SLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
+ + + +VT L + + F M L ++ + +R L E
Sbjct: 176 DVTVGILAKMDKVTLLQMDAKLPIDTFENVMGLAIEGCKAIATYIREVLLE 226
>gi|336265878|ref|XP_003347709.1| hypothetical protein SMAC_03807 [Sordaria macrospora k-hell]
gi|380091243|emb|CCC11100.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 286
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 113/250 (45%), Gaps = 38/250 (15%)
Query: 41 SRGFHQCRPAFFRTGAVNSASGSAYAEF---GN----TKVIVSVFGPRESKKAMMYSNIG 93
SR + R + +TG SASGSAY E GN K+ SV GPR ++ +S
Sbjct: 35 SRPANVIRKMYLKTGVTPSASGSAYLEIESSGNGGSGLKLSCSVHGPRALPRSTPFSPHI 94
Query: 94 RLNCNVSYTTFATPVR-GQGSD--HKDFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
L+ +V + FAT R G D +D + L AL G+II + +PK+ VD+ ++E G
Sbjct: 95 ILSTHVKFAPFATKQRRGYIRDPIERDLGTHLEAALRGSIIADRWPKSGVDIIISIVE-G 153
Query: 151 GSD-----------------LPVVISCASVALADAGIMMYDLVAS-----VSVSC--LGK 186
D L I+ AS ALADAGI D VA V +C
Sbjct: 154 EQDRETSKAQGIEAWDTMNALSGCITVASAALADAGIDCVDTVAGGVAALVQDACDDAAP 213
Query: 187 NLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLC---LDASAKL 243
++++DP+ E + IA +P+R EVT G+ + QL + AS
Sbjct: 214 SIVVDPIPSEHEKVLAACCIAYLPTRQEVTNFWFKGDLPASDMDLYSQLVEKGIQASKSA 273
Query: 244 GKIMRSCLKE 253
+++ CL E
Sbjct: 274 NRVLVDCLNE 283
>gi|302798759|ref|XP_002981139.1| hypothetical protein SELMODRAFT_233636 [Selaginella moellendorffii]
gi|300151193|gb|EFJ17840.1| hypothetical protein SELMODRAFT_233636 [Selaginella moellendorffii]
Length = 264
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 105/223 (47%), Gaps = 5/223 (2%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIG 93
+ LR D R + R G V +A+GSA E GNTKVI +V+GP E ++ +
Sbjct: 7 EGLRLDGRRPLEMRQLHAELGVVENANGSAMFEMGNTKVIAAVYGPHEVHNRSQQLWDRA 66
Query: 94 RLNCNVSYTTFAT----PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ C S F+T + S ++ + LE AI+ PK+ +D++ VL++
Sbjct: 67 LVRCEYSMAAFSTGDRRRKGKGNRRSTEISLVIRQTLEAAILTNLMPKSQIDIYVQVLQA 126
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACM 209
G I+ A++ALA+AGI M DLVAS + L L+D E+S + +A
Sbjct: 127 DGGTRSACINAAALALAEAGIPMRDLVASCAAGYLNGTPLLDLNYVEDSGGGPDVTVALF 186
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
P +V+ L + + HF QL + + + MR +
Sbjct: 187 PKVDKVSLLQMDSKMPLEHFENVFQLAAEGAKAAARYMREVTR 229
>gi|260941676|ref|XP_002615004.1| hypothetical protein CLUG_05019 [Clavispora lusitaniae ATCC 42720]
gi|238851427|gb|EEQ40891.1| hypothetical protein CLUG_05019 [Clavispora lusitaniae ATCC 42720]
Length = 244
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 90/167 (53%), Gaps = 7/167 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGA-VNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGR 94
LR D R +++ R + NSA GS+Y E GNTKV+ V GP+E S ++ N
Sbjct: 12 LRVDGRRWNELRRFECKINTHANSADGSSYIEQGNTKVMCMVHGPKEPSLRSQSNQNRAT 71
Query: 95 LNCNVSYTTFATPVRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ N++ +F+T R + + + + + L + E +I+ +P+T ++V VL
Sbjct: 72 IEINLNVASFSTLERKKRNRTEKRMVELKTTLERTFEQSILAHLYPRTLIEVHVQVLAQD 131
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLID-PVLEE 196
G L + + ++AL DAGI MYD V++V+V+ + L+D LEE
Sbjct: 132 GGMLASITNAITLALVDAGIAMYDYVSAVNVALHDQTPLLDLNTLEE 178
>gi|383847639|ref|XP_003699460.1| PREDICTED: exosome complex component RRP41-like [Megachile
rotundata]
Length = 273
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 116/255 (45%), Gaps = 32/255 (12%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS-- 90
D + LRPD R + R + G A GSAY E GNTK++V+V+GP + + + S
Sbjct: 9 DHNGLRPDGRRALELRQIRIKMGVFGQADGSAYIEQGNTKILVTVYGPHQPRGSTGRSTS 68
Query: 91 --NIGRLNCNVSYTTFATPV----RGQGSDHK--DFSSMLHKALEGAIILETFPKTTVDV 142
G +NC S F+ R D K + S L A+E I LE +P++ +D+
Sbjct: 69 KVTKGIVNCQYSMAVFSLSSGERKRKPRGDRKSQEKSLQLKHAMEAIIHLELYPRSQIDI 128
Query: 143 FALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLL-----------ID 191
+ VL+ GS+ I+ +++AL DAGI + + +V+ + + L +D
Sbjct: 129 YVEVLQVDGSEYCASINASTLALIDAGIPIKNYAVGCTVTLINSSSLDNEDSSLGTGVLD 188
Query: 192 PVLEEESYQDGSLMIACMPSRYEVTQ--LTVTGEWS-----TPHF----NEAMQLCLDAS 240
EE + +L + +P+ +++ L V E + HF + + C D
Sbjct: 189 ANYIEECNRGVTLSVIALPNSDGISKDGLIVVAEGAGQRLHLSHFESLKDRVLHGCQDIK 248
Query: 241 AKLGKIMRSCLKEAA 255
L + +R L E +
Sbjct: 249 VILDQAVRHYLTEQS 263
>gi|448097303|ref|XP_004198638.1| Piso0_002021 [Millerozyma farinosa CBS 7064]
gi|359380060|emb|CCE82301.1| Piso0_002021 [Millerozyma farinosa CBS 7064]
Length = 278
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 95/203 (46%), Gaps = 28/203 (13%)
Query: 46 QCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNV------ 99
+ R F +TG V++ASGS+Y E N V VSVFGPR + + + C
Sbjct: 39 EVRKVFIKTGLVSNASGSSYIEASNIIVEVSVFGPRPIRGSFTDRASFSVECKFLPYLKQ 98
Query: 100 -SYTTFATPVRGQGSDHKDFSSMLHK-------ALEGAIILETFPKTTVDVFALVLESGG 151
F + + + + HK A IILE +PK+T+DVF V+ +G
Sbjct: 99 PQEDLFRGDTHANNNGRQGLTEVEHKISQYVETAFLPCIILEKYPKSTIDVFITVISTGN 158
Query: 152 SDLPV--------VISCASVALADAGIMMYDLVASVSVSCLG--KNLLIDPVLEEESYQD 201
+ P +++C+S+AL D+GI + D+V S + L + L++DP LE E +D
Sbjct: 159 TTAPSSILNLTNWIVNCSSLALIDSGIEIKDIVTSGHIKYLQSEQRLIVDP-LENEERED 217
Query: 202 GSLMIACMPSRYEVTQLTVTGEW 224
+ C+ S + + G W
Sbjct: 218 A---LDCLVSFESLKNDEIVGLW 237
>gi|219118941|ref|XP_002180237.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408494|gb|EEC48428.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 212
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 102/200 (51%), Gaps = 6/200 (3%)
Query: 57 VNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSD-- 114
+ +A GSA E G+TKVI V GP + + + ++ +LN F G+ +
Sbjct: 2 LEAAQGSALVELGHTKVIGQVLGPVTASSSHLPPSL-QLNMEEGVMHFELLSTGKINSWT 60
Query: 115 ---HKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIM 171
D +S L AL ++ L +PK + V VL+ GS LP I+ A++ALADA +
Sbjct: 61 IARETDLASNLSDALSASVPLRQYPKCALLVKITVLQDDGSILPACITAATLALADASVE 120
Query: 172 MYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNE 231
MYD+VA+ +V+ L+ DP L E S D + +A +P+ E T +G + NE
Sbjct: 121 MYDVVAASTVAVCDGLLVADPTLREVSAADAVMTLAILPNWKESTLWQQSGRLNPQRANE 180
Query: 232 AMQLCLDASAKLGKIMRSCL 251
AM+LC + + + +R L
Sbjct: 181 AMELCRNGCRTMHRFLREHL 200
>gi|395323371|gb|EJF55845.1| hypothetical protein DICSQDRAFT_150740 [Dichomitus squalens
LYAD-421 SS1]
Length = 264
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 106/225 (47%), Gaps = 14/225 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLN 96
R D R ++ R +A GSA G T+V+V+VFGPRE+K ++ + LN
Sbjct: 14 RSDGRKQYELRDITIDLTQQGTADGSAQLTHGLTQVLVTVFGPREAKMRSQTLHDRAVLN 73
Query: 97 CNVSYTTFATPVRGQGSDHK-------DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+S F+T G+ + ++M+ E + +P++ +D++ VL+
Sbjct: 74 VEMSVAPFST---GERRKRSRADRRILEMAAMIASTFEPVVQTNLYPRSQIDIYVHVLQQ 130
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLID-PVLEEESYQDGSLMIAC 208
GS LP I+ ++AL AG+ + D V +V+ + L+D LEE + +A
Sbjct: 131 DGSLLPACINATTLALVTAGVPLLDFVCAVTGGVHSTSPLLDLTTLEENDVP--HMTVAV 188
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
MP +VT +T+ F E +L +A + + M+ +K+
Sbjct: 189 MPRTRKVTLVTMETRLHVERFRELFELACEAGQTIHREMKYAVKD 233
>gi|50550057|ref|XP_502501.1| YALI0D06776p [Yarrowia lipolytica]
gi|49648369|emb|CAG80689.1| YALI0D06776p [Yarrowia lipolytica CLIB122]
Length = 287
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 119/247 (48%), Gaps = 11/247 (4%)
Query: 20 PTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAV-NSASGSAYAEFGNTKVIVSVF 78
P ++R I+S + LR D R +++ R + SA GS+Y E+G+TKV+ +V
Sbjct: 44 PLTQSRHEIYSP---EGLRTDGRRWNEIRNFDCKINTHPTSADGSSYVEWGHTKVVCTVD 100
Query: 79 GPRESKKAMMYSNIGRLNCNVSYTTFATPVR--GQGSDHK--DFSSMLHKALEGAIILET 134
GPRE ++ ++ NV+ +F+T R Q +D + + + ++ + LE A++ +
Sbjct: 101 GPREPDNRQNTTDRAVISVNVNVASFSTETRIKRQRNDKRLAEMNILIRQLLEEAVLTKL 160
Query: 135 FPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLID-PV 193
P+T + V V+ G LP I+ A +A+ DAG+ + D V++ S N LID
Sbjct: 161 NPRTQIAVNITVIAQDGGLLPACINAACLAMIDAGVPLTDYVSACSSGVYSNNALIDLNT 220
Query: 194 LEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
LEE+ L I + +++ LT+ + + L + + IM + +++
Sbjct: 221 LEEQDVP--FLTIGVIGKSDKISMLTLETQLPMASLEPVLATSLSGAHAIQDIMDAAVRK 278
Query: 254 AASDEQE 260
E
Sbjct: 279 HGKHRLE 285
>gi|156550959|ref|XP_001603897.1| PREDICTED: exosome complex component RRP41-like [Nasonia
vitripennis]
Length = 270
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 82/168 (48%), Gaps = 17/168 (10%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI---- 92
LR D R + R R G A GSAY E G TK++ +V+GP + + + +
Sbjct: 12 LRADGRRPLELRRIRLRMGVFGQADGSAYLEQGKTKILATVYGPHQPRGKANANALKAVK 71
Query: 93 GRLNCNVSYTTFATPVRGQGSDHK---------DFSSMLHKALEGAIILETFPKTTVDVF 143
G +NC S F+ G G K + S L A+E I LE F ++ +D+F
Sbjct: 72 GIVNCQYSTAVFSF---GAGERKKKPRGDRKSQERSQQLRHAMEAIINLELFARSQIDIF 128
Query: 144 ALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLID 191
VL+ GSD V ++ A++AL DAGI + D SV+ + NLL D
Sbjct: 129 VEVLQVDGSDFCVAVNAATLALIDAGIPIKDYAIGCSVT-VSDNLLGD 175
>gi|443895550|dbj|GAC72896.1| inositol polyphosphate multikinase, component of the ARGR
transcription regulatory complex [Pseudozyma antarctica
T-34]
Length = 266
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 102/224 (45%), Gaps = 8/224 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVN--SASGSAYAEFGNTKVIVSVFGPRESKKA-MMYSNIG 93
R D R ++ R + G +A GSA G T V +VFGPRE++ M +
Sbjct: 12 FRVDGRKQYELRSIAIQLGGSEDTTADGSAQITHGLTTVSATVFGPREARSGGNMLHDRA 71
Query: 94 RLNCNVSYTTFAT----PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
LN V+ + + +F+S + E + +P++ +D+F V +
Sbjct: 72 SLNVEVALAPWGSMERRRRNRGDRRLVEFASAIKSTFEPVVHTHLYPRSQIDIFVHVHQQ 131
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACM 209
G LP I+ A++AL DAGI M+D VA+VS L+D EES +L +A +
Sbjct: 132 DGGVLPAAINAATLALLDAGIAMHDFVAAVSCGIHSTAALLDLSNAEES-DLPNLTVAVL 190
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
P +VT ++ F + L +DA+ L M+ +++
Sbjct: 191 PRTKQVTLASLETRLHVERFQQIFNLAIDAAQVLHNEMQLAVRD 234
>gi|406864379|gb|EKD17424.1| 3' exoribonuclease family protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 324
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 115/267 (43%), Gaps = 59/267 (22%)
Query: 48 RPAFFRTGAVNSASGSAYAEF------------------GNTKVIVSVFGPRESKKAMMY 89
R F +TG SASGSAY E K+ +V GPR K+ +
Sbjct: 44 RKMFLKTGVTPSASGSAYLELEASRAANSRAPGLASLSTSGLKLTCTVHGPRPLPKSAPF 103
Query: 90 SNIGRLNCNVSYTTFATPVRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALV 146
S L+ +V Y FAT R + S +D S L AL G II + +PK+ V+V +
Sbjct: 104 SPHIILSTHVKYAPFATRKRRGYLRDSSERDLSVHLETALRGVIIGDRWPKSGVEVIITI 163
Query: 147 LES----------GGSD----------LPVVISCASVALADAGIMMYDLVASVSVSCLGK 186
LE GGS L I+ AS A+ADAGI D V S V+ + K
Sbjct: 164 LEGEEDQWWGDDRGGSTTAGEWGMMSVLSGCITVASAAIADAGIDCVDAV-SGGVAAVVK 222
Query: 187 N-------LLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEW----------STPHF 229
N L++DPV E + ++A +P+R E+T L V GE T F
Sbjct: 223 NNQSKQSTLVLDPVPSEHQEILAACIVAYLPARDEITDLWVKGEIGHGDRSINTAQTTSF 282
Query: 230 NEAMQLCLDASAKLGKIMRSCLKEAAS 256
E + A+ +++ + LKE A+
Sbjct: 283 EELADNAVQAALGSHRVLVAALKETAN 309
>gi|350409108|ref|XP_003488612.1| PREDICTED: exosome complex component RRP41-like [Bombus impatiens]
Length = 270
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 93/188 (49%), Gaps = 15/188 (7%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI 92
D LRPD R + R + G A GSAY E GNTK++V+V+GP + + + +
Sbjct: 9 DQSGLRPDGRRALELRQIRVKMGVFGQADGSAYIEQGNTKILVTVYGPHQPRGSTGRNTT 68
Query: 93 -GRLNCNVSYTTFATP----VRGQGSDHK--DFSSMLHKALEGAIILETFPKTTVDVFAL 145
G +NC S F+ R D K + S L A+E I LE +P++ +D++
Sbjct: 69 KGIVNCQYSMAVFSLSSGERKRKPRGDRKSQERSLQLKHAMEAIIHLEIYPRSQIDIYVE 128
Query: 146 VLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLM 205
L+ GS+ ++ A++AL DAGI + + +V+ L+ +P E+E D +L
Sbjct: 129 ALQVDGSEYCASVNAATLALIDAGIPIKNYAIGCTVT-----LINNPSSEDE---DNTLG 180
Query: 206 IACMPSRY 213
+ + Y
Sbjct: 181 RGVLDANY 188
>gi|209877665|ref|XP_002140274.1| 3' exoribonuclease protein [Cryptosporidium muris RN66]
gi|209555880|gb|EEA05925.1| 3' exoribonuclease protein, putative [Cryptosporidium muris RN66]
Length = 295
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 107/218 (49%), Gaps = 30/218 (13%)
Query: 32 SDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSN 91
S +++R DSR ++ RP +TG V + GSAY G T+V+ ++ GP+ +K ++ +
Sbjct: 40 SSSNYIRNDSRIPNEVRPINIKTGTVATCDGSAYFSIGRTRVLCTINGPKLTKSSL--NE 97
Query: 92 IGRLNCNVSY--TTFATPVRGQGSDHK-----DF-------SSMLHKALEGAIILETFPK 137
IG L+ V Y + F +R G+ +K D+ S L K ++ I E + +
Sbjct: 98 IG-LSVTVDYRLSPFCKKMRQYGNINKSNLNTDYKAEEKYQSLTLEKVIQSIICREKYTR 156
Query: 138 TTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKN---------- 187
++D + ++E G L ISC S+AL DA I + L +SV+V + N
Sbjct: 157 MSIDCYIYIIEDDGCALSAAISCLSLALCDAKIEIIGLFSSVTVIAIPNNSEVKSDCKYI 216
Query: 188 LLIDPVLEEESYQDGS---LMIACMPSRYEVTQLTVTG 222
++DP +E + ++ + L I R +V L+ G
Sbjct: 217 CILDPTYDEINLENSNISELSIGLCTLRNQVVHLSAKG 254
>gi|340712754|ref|XP_003394920.1| PREDICTED: exosome complex component RRP41-like isoform 1 [Bombus
terrestris]
Length = 270
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 93/188 (49%), Gaps = 15/188 (7%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI 92
D LRPD R + R + G A GSAY E GNTK++V+V+GP + + + +
Sbjct: 9 DQSGLRPDGRRALELRQIRVKMGVFGQADGSAYIEQGNTKILVTVYGPHQPRGSTGRNTT 68
Query: 93 -GRLNCNVSYTTFATPV----RGQGSDHK--DFSSMLHKALEGAIILETFPKTTVDVFAL 145
G +NC S F+ R D K + S L A+E I LE +P++ +D++
Sbjct: 69 KGIVNCQYSMAVFSLSSGERKRRPRGDRKSQERSLQLKHAMEAIIHLEIYPRSQIDIYVE 128
Query: 146 VLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLM 205
L+ GS+ ++ A++AL DAGI + + +V+ L+ +P E+E D +L
Sbjct: 129 ALQVDGSEYCTSVNAATLALIDAGIPIKNYAIGCTVT-----LINNPSSEDE---DNTLG 180
Query: 206 IACMPSRY 213
+ + Y
Sbjct: 181 RGVLDANY 188
>gi|409077801|gb|EKM78166.1| hypothetical protein AGABI1DRAFT_101423 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426199140|gb|EKV49065.1| hypothetical protein AGABI2DRAFT_191204 [Agaricus bisporus var.
bisporus H97]
Length = 260
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 103/220 (46%), Gaps = 8/220 (3%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLN 96
R D R + R A GSA G T+V+VSVFGPRE+K ++ + +N
Sbjct: 14 RSDGRRQFELREVTINLAQQGHADGSAIITHGLTQVLVSVFGPREAKMRSQTIHDRANIN 73
Query: 97 CNVSYTTFATPVRGQGS--DHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
+V+ F+ R + S D + + +S L E + +P++ +DV+ VL+ G
Sbjct: 74 VDVNVAAFSAGERRKRSRGDKRILEIASTLKSTFEPVVQTTLYPRSQIDVYVTVLQQDGG 133
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLID-PVLEEESYQDGSLMIACMPS 211
L I+ ++AL +AGI M D V +V+ + L+D LEE + +A MP
Sbjct: 134 LLQTCINGTTLALINAGIPMLDFVCAVTGGVHSTSPLLDLTTLEENDVP--HVTVAIMPK 191
Query: 212 RYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
+V +T+ F E +L +A L + M+S +
Sbjct: 192 TGKVALVTMETRLHVDRFEEIFRLAGEAGKVLHREMKSAV 231
>gi|154419828|ref|XP_001582930.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas
vaginalis G3]
gi|121917168|gb|EAY21944.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas
vaginalis G3]
Length = 241
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 104/226 (46%), Gaps = 13/226 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R ++ R + G + +GS++ + G T+VI +FGPR+++ N +
Sbjct: 10 LRIDGRPPNEMRLVEAKIGTIPGCTGSSHFKIGQTEVIAQIFGPRDNRSG---DNAAEIR 66
Query: 97 CNVSYTTFA-------TPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
Y FA T + +G ++ ++ + E AI E FP + + + V++
Sbjct: 67 VTFEYADFAKVPHASDTSMTRRG---RESEVIMKRTFEEAIKRELFPHSKILIAITVIQD 123
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACM 209
GS I+ A++AL DAGI M+D V S++V+ +D E + + L ++
Sbjct: 124 DGSCQSAAINAATLALIDAGIPMFDFVVSMTVALYDDKCFLDAGRAESNARFPVLEVSIF 183
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAA 255
PS E+ + +T M +D +L IM+ ++ A+
Sbjct: 184 PSTSEILSMNLTARIEPQASKNLMAAAIDGCKELHAIMQDVVRVAS 229
>gi|19113410|ref|NP_596618.1| exosome complex component mtr3 [Schizosaccharomyces pombe 972h-]
gi|74638748|sp|Q9P7R3.1|MTR3_SCHPO RecName: Full=Exosome complex component mtr3
gi|6983772|emb|CAB75416.1| exosomal 3'-5' exoribonuclease, PH-like (predicted)
[Schizosaccharomyces pombe]
Length = 257
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 104/206 (50%), Gaps = 10/206 (4%)
Query: 41 SRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVS 100
+R +CR + + G A GS+Y E K+ +V GPR SK + + +LNC
Sbjct: 29 TRDVDRCRKIYLKLGWATKAVGSSYFESEKIKIACTVSGPRPSK-TFAFRSSAKLNCEFR 87
Query: 101 YTTFATPVRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG--SDLP 155
+ F+T VR Q + K +S M+ A+ +I+L +PK+++DV+ V+ES G + L
Sbjct: 88 LSPFSTSVRQGHVQTVEEKSYSQMIEAAISPSILLHLYPKSSIDVYIQVIESDGALATLA 147
Query: 156 VVISCASVALADAGIMMYDLV--ASVSVSCLGKNLLIDP--VLEEESYQDGSLMIACMPS 211
ISCAS A+ADA I DLV +SV + IDP V E GS+++ M S
Sbjct: 148 AAISCASSAIADANIDCIDLVTGSSVLFNPNTDEYWIDPDYVDERARAAKGSVVMGYMAS 207
Query: 212 RYEVTQLTVTGEWSTPHFNEAMQLCL 237
VTQ+ G S + + C+
Sbjct: 208 LGHVTQVWERGTCSPSRLSFLTEKCI 233
>gi|408389934|gb|EKJ69353.1| hypothetical protein FPSE_10466 [Fusarium pseudograminearum CS3096]
Length = 283
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 112/236 (47%), Gaps = 34/236 (14%)
Query: 20 PTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNT-------- 71
P T PPIF SD + +R + R + +TG SASGSAY E +
Sbjct: 10 PGGNTVPPIFE-SDESIVPRRTRAANGIRAQYLKTGVTPSASGSAYLEIESQDASGSKGM 68
Query: 72 KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG---QGSDHKDFSSMLHKALEG 128
K+ +V GPR ++ +S L+ +V Y FAT R + S +D SS L AL G
Sbjct: 69 KLTCTVHGPRSLPRSAPFSPHMVLSTHVKYAPFATRQRRGYLRDSSERDLSSHLEAALRG 128
Query: 129 AIILETFPKTTVDVFALVLESG---------GSD----LPVVISCASVALADAGIMMYDL 175
AII + +PK+ VDV V+E GS+ + V+ C +VA A D
Sbjct: 129 AIIADRWPKSGVDVIVTVIEGDQAREVAVEQGSEEWDMMNVLSGCITVAAAALADAGIDC 188
Query: 176 VASVS--VSCL--GKN-----LLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTG 222
V +VS V+ L G++ +++DPV E S + +A +P R E+T L + G
Sbjct: 189 VDTVSGGVAALVPGQDNDEPIMVLDPVPSEHSQILAACCVAYLPERDEITNLWLKG 244
>gi|326429591|gb|EGD75161.1| hypothetical protein PTSG_06814 [Salpingoeca sp. ATCC 50818]
Length = 241
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 92/183 (50%), Gaps = 8/183 (4%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNI 92
V+ LR D R ++ R G A GSAY + G+TKV+ V GP++ KA +
Sbjct: 7 VEGLREDGRRANELRRVEANVGMFPHADGSAYFQQGDTKVVAIVNGPKQGVGKA---GDA 63
Query: 93 GRLNCNVSYTTFATPVRGQ----GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
G++ C+ F+T R + + + S + E AI+ + +P++ +++ VL+
Sbjct: 64 GKVVCDFEMAAFSTTQRRKPLRLDRKNAELGSKIASTFESAIMTDLYPRSQIEISVQVLQ 123
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ G L V I+ ++AL DAG+ M D V + + S + ++D E S Q L IA
Sbjct: 124 ADGGVLAVAINAVTLALMDAGVAMTDFVCACTASVIDGTNVLDINHYEASAQGPELTIAV 183
Query: 209 MPS 211
+PS
Sbjct: 184 LPS 186
>gi|307214803|gb|EFN89690.1| Exosome complex exonuclease RRP41 [Harpegnathos saltator]
Length = 271
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 79/155 (50%), Gaps = 7/155 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL- 95
LR D R + R R G A GSAY E GNTKV+ +V+GP + + + + +
Sbjct: 13 LRVDGRRALELRQIRIRMGVFGQADGSAYIEHGNTKVLAAVYGPHQPRNNIAKNTTKAIV 72
Query: 96 NCNVSYTTFA-----TPVRGQGS-DHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
NC S F+ R +G ++ S L A+E I LE +P++ +D+F +L+
Sbjct: 73 NCQYSMAVFSFTSGERKRRPRGDWKSQERSIQLRHAMEAIIHLELYPRSQIDIFVEILQV 132
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCL 184
GSD ++ A++AL DAGI + + +V+ +
Sbjct: 133 DGSDYCASVNAATLALIDAGIPIKNYAVGCTVALI 167
>gi|367022270|ref|XP_003660420.1| hypothetical protein MYCTH_74015 [Myceliophthora thermophila ATCC
42464]
gi|347007687|gb|AEO55175.1| hypothetical protein MYCTH_74015 [Myceliophthora thermophila ATCC
42464]
Length = 285
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 124/275 (45%), Gaps = 43/275 (15%)
Query: 20 PTRKTRPPIFSGSDVDWLRP---DSRGFHQCRPAFFRTGAVNSASGSAYAEFGNT----- 71
P T PPI+ SD+ R SR + R F +TG SASGSAY E +
Sbjct: 10 PAGATIPPIYDDSDLQEPRSAKGRSRAPNASRKMFLKTGVTPSASGSAYLEMETSATPGV 69
Query: 72 ---KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG---QGSDHKDFSSMLHKA 125
K+ SV GPR ++ +S L+ +V Y FAT R + +D L A
Sbjct: 70 SGLKLSCSVHGPRSLPRSAPFSPHIILSTHVKYAPFATKQRRGYLRDPSERDLGIHLETA 129
Query: 126 LEGAIILETFPKTTVDVFALVLESGGSD-----------------LPVVISCASVALADA 168
L GAII + +PK+ VD+ ++E G D L I+ A+ ALADA
Sbjct: 130 LRGAIIADRWPKSGVDIIVSIVE-GDQDREASKLQGDEVWDMMNALSGCITVAAAALADA 188
Query: 169 GIMMYDLVASVSVSCLGKN-------LLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVT 221
GI D VA V+ L ++ +++DP+ E + IA +P+R EVT L
Sbjct: 189 GIDCVDTVAG-GVAALVQDSGEDTPRIVVDPIPSEHEKILAACCIAYLPNRDEVTNLWFR 247
Query: 222 GEW---STPHFNEAMQLCLDASAKLGKIMRSCLKE 253
G+ T + ++ + AS +++ SCL E
Sbjct: 248 GDLPASDTDLYTSLVEKGIQASKNANRVLVSCLSE 282
>gi|225559339|gb|EEH07622.1| 3' exoribonuclease [Ajellomyces capsulatus G186AR]
Length = 350
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 120/278 (43%), Gaps = 71/278 (25%)
Query: 20 PTRKTRPPIFSGSD--------VDWLRP-DSRGFHQCRPAFFRTGAVNSASGSAYAEF-- 68
P TRPP+F+ S V RP +R H+ R F +TG + SASGSAY EF
Sbjct: 10 PPAGTRPPVFASSLLSSDGQHCVALERPVRTRKQHELRRIFLKTGLIPSASGSAYLEFQP 69
Query: 69 ----------------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFAT-PVRGQ 111
+ K+I S+ GP+ ++ +S L+ +V + FA+ RG
Sbjct: 70 SSFIPRSKLKTLIPPSSSLKLICSIHGPKPLPRSAPFSPNLLLSTHVKFAPFASRRRRGH 129
Query: 112 GSD--HKDFSSMLHKALEGAIILETFPKTTVDVFALVLES---------------GGSD- 153
D +D L AL GAII E +PK+ +D+ VLE GG D
Sbjct: 130 IRDVNERDLGVHLETALRGAIIAERWPKSGLDITVTVLEGEDDCWWGDVLSAGPLGGVDG 189
Query: 154 ------LPVVISCASVALADAGIMMYDL--------VASVSVSCLGK-----------NL 188
L I+ AS A+ADA I DL V S +V G+ +L
Sbjct: 190 WGLMNVLAGCITVASAAIADARIDCMDLITGGVAAFVESPNVETSGRTKDSSQRGHGYSL 249
Query: 189 LIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWST 226
++DP E + ++ MPSR E+T+L + G+ S
Sbjct: 250 VLDPDPSEHLGIVSACVVGYMPSRDEITELWLKGDTSN 287
>gi|241954284|ref|XP_002419863.1| 3'-to-5' phosphorolytic exoribonuclease, putative; exosome complex
exonuclease, putative; ribosomal RNA processing protein,
putative [Candida dubliniensis CD36]
gi|223643204|emb|CAX42078.1| 3'-to-5' phosphorolytic exoribonuclease, putative [Candida
dubliniensis CD36]
Length = 240
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 108/219 (49%), Gaps = 7/219 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAV-NSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNI 92
+ LR D R +++ R R NS+ GS+Y E GNTKV+ +V GP E + ++ +S
Sbjct: 7 EGLRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVMCTVQGPIEPTLRSQQHSER 66
Query: 93 GRLNCNVSYTTFATPVRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ N++ +F+T R + S ++ + + L K E ++++ +P+T + + VL
Sbjct: 67 ANIEVNLNIASFSTFERKKRSRNERRLVELKTTLEKTFEESVMINLYPRTNIVINVQVLC 126
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
G L +I+ ++AL DAGI MYD V+ VS + L+D V E + L I
Sbjct: 127 QDGGMLATIINSITLALIDAGISMYDYVSGVSCGLYDQTPLLD-VNNLEEHDMSCLTIGV 185
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIM 247
+ ++ L + + + + + S K+ ++M
Sbjct: 186 IGKSEKLALLLLEDKMPLDRLESVLSIGIAGSHKIRELM 224
>gi|294654809|ref|XP_456890.2| DEHA2A12914p [Debaryomyces hansenii CBS767]
gi|199429165|emb|CAG84867.2| DEHA2A12914p [Debaryomyces hansenii CBS767]
Length = 302
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 131/286 (45%), Gaps = 37/286 (12%)
Query: 1 MAAKPSTTTTAKATYSPIDPTRKTRPPIFSGSDVDWLRP---DSRGFHQCRPAFFRTGAV 57
+ + STT + P P + SD++ +P + + + R F ++G V
Sbjct: 10 LTSNQSTTFQMSDRRRLLGPVNAKLPNVGISSDLNN-KPTTENKKRNDEVRKMFLKSGLV 68
Query: 58 NSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCN----------VSYTTFATP 107
+A+GSAY E G+T + VSVFGPR + + + + C +++ AT
Sbjct: 69 TNANGSAYLEVGDTIIEVSVFGPRPIRGSFIDRASFSVECKFLPYVTQPNEITFNGKATN 128
Query: 108 VRGQG-----SDHKDFSSMLHKALEGAIILETFPKTTVDVFALVL---------ESGGSD 153
G + + SS L +L I+LE +PK+T+D+F V+ S +
Sbjct: 129 FNNNGRPSLTNIEQKISSYLETSLLPCILLEKYPKSTIDIFVSVISTNSNPNSNSSLLNL 188
Query: 154 LPVVISCASVALADAGIMMYDLVAS--VSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS 211
+ +I+C+S+AL D+GI + D+V S V+++ L +DP+ ++ D I C+ S
Sbjct: 189 INWIINCSSLALVDSGIELKDIVTSGQVNLNQKSNELTLDPIYPVDTI-DKEDSIDCLVS 247
Query: 212 RYEVTQLTVTGEW---STPHFNEAM--QLCLDASAKLGKIMRSCLK 252
+ + G W NE + QL +D ++ K +RS +
Sbjct: 248 FMNLRNDEIVGFWVEGKQEELNETIVTQL-IDGCNEMSKQIRSNIN 292
>gi|380015549|ref|XP_003691763.1| PREDICTED: exosome complex component RRP41-like [Apis florea]
Length = 271
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 93/191 (48%), Gaps = 18/191 (9%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS-- 90
D + LR D R + R + G A GSAY E GNTK++V+V+GP + + + S
Sbjct: 9 DQNGLRLDGRRALELRQIRIKMGVFGQADGSAYIEHGNTKILVTVYGPHQPRNSTGRSTS 68
Query: 91 --NIGRLNCNVSYTTFATP----VRGQGSDHK--DFSSMLHKALEGAIILETFPKTTVDV 142
G +NC S F+ R D K + S L A+E I LE +P++ +D+
Sbjct: 69 KVTKGIVNCQYSMAVFSLSSGERKRKPRGDRKSQERSLQLKHAMEAIIHLELYPRSQIDI 128
Query: 143 FALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDG 202
+ L+ GS+ ++ A++AL DAGI + + +V+ L+ P LE+E D
Sbjct: 129 YVEALQVDGSEYCASVNAATLALIDAGIPIKNYAIGCTVT-----LINCPSLEDE---DN 180
Query: 203 SLMIACMPSRY 213
+L + + Y
Sbjct: 181 TLERGVLDANY 191
>gi|150864479|ref|XP_001383313.2| exosome exoribonuclease [Scheffersomyces stipitis CBS 6054]
gi|149385735|gb|ABN65284.2| exosome exoribonuclease [Scheffersomyces stipitis CBS 6054]
Length = 289
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 115/249 (46%), Gaps = 48/249 (19%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAM-------------------- 87
RP F +TG + +A+GS+Y E GN + VSV+GPR + +
Sbjct: 39 RPFFLKTGIIENANGSSYLEVGNNIIEVSVYGPRPIRGSFIDRASFSVECKFLPFISQPN 98
Query: 88 --MYSNIGRLNCNVSYTTFATPVRGQGS------DHKDFSSMLHKALEGAIILETFPKTT 139
+Y+N + + TT T V G +HK SS + +L +I+LE +PK+T
Sbjct: 99 EHLYNNTSISASSAANTTNQTNVNVNGRTGLTSIEHK-ISSYIETSLLPSIVLEKYPKST 157
Query: 140 VDVFALVLES----GG--SDLPV------VISCASVALADAGIMMYDLVASVSVSCLGKN 187
+DVF ++ + GG SD + V++ +SVAL D+GI + D+V S
Sbjct: 158 IDVFVTIISTDSSLGGSYSDTKMLSLVNWVLNASSVALVDSGIEVKDVVTSGVAHLQNDV 217
Query: 188 LLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEW----STPHFNEAMQLCLDASAKL 243
L++DP E + +GS ++C+ S + + G W T N + LD +
Sbjct: 218 LVLDPT-EIQEKDEGS--VSCVASFMNLRNDEIVGIWIEGDQTNLENSQVDHLLDGCNDM 274
Query: 244 GKIMRSCLK 252
K +R+ +
Sbjct: 275 SKKVRANIN 283
>gi|238881631|gb|EEQ45269.1| exosome complex exonuclease RRP41 [Candida albicans WO-1]
Length = 240
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 88/163 (53%), Gaps = 6/163 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAV-NSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNI 92
+ LR D R +++ R R NS+ GS+Y E GNTKV+ +V GP E + ++ +S
Sbjct: 7 EGLRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVMCTVQGPIEPALRSQQHSER 66
Query: 93 GRLNCNVSYTTFATPVRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ N++ +F+T R + S ++ + + L K E ++++ +P+T + + VL
Sbjct: 67 ANIEVNLNIASFSTFERKKRSRNERRLVELKTTLEKTFEESVMINLYPRTNIVINVQVLC 126
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLID 191
G L VI+ ++AL DAGI MYD V+ VS + L+D
Sbjct: 127 QDGGMLAAVINSITLALIDAGISMYDYVSGVSCGVYDQTPLLD 169
>gi|336383937|gb|EGO25086.1| exoribonuclease, exosome component 4 [Serpula lacrymans var.
lacrymans S7.9]
Length = 265
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 109/240 (45%), Gaps = 11/240 (4%)
Query: 24 TRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES 83
+R IF+ R D R ++ R SA GS G T V+VSVFGP E+
Sbjct: 3 SRIEIFNDG---GFRSDGRRQYELRDISIDLSNHGSADGSVTIRQGLTHVLVSVFGPHEA 59
Query: 84 K-KAMMYSNIGRLNCNVSYTTFATPVRGQGS--DHK--DFSSMLHKALEGAIILETFPKT 138
+ ++ + LN V+ + F+ R + S D + + ++ + E I +P++
Sbjct: 60 RVRSQTLHDRANLNVEVNVSAFSAGERRKRSRADKRLLELAATIRSTFEPVIQTHLYPRS 119
Query: 139 TVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLID-PVLEEE 197
+DVF V++ G L I+ ++ALA AGI ++D V +V+ + ++D LEE
Sbjct: 120 QIDVFVQVIQQDGGLLQTCINGTTLALAHAGIPLFDFVCAVTGGVHSSSPMLDLTTLEEN 179
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASD 257
+ +A MP VT + + F E L +DA + K M+ L+ +D
Sbjct: 180 DIPN--FTVAIMPKSNRVTLVAMETRLHIDRFEELFLLAVDAGNIIHKEMKIALQARTND 237
>gi|328777661|ref|XP_003249381.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 1 [Apis
mellifera]
Length = 284
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 93/191 (48%), Gaps = 18/191 (9%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS-- 90
D + LR D R + R + G A GSAY E GNTK++V+V+GP + + + S
Sbjct: 25 DQNGLRLDGRRALELRQIRIKMGVFGQADGSAYIEHGNTKILVTVYGPHQPRNSTGRSTS 84
Query: 91 --NIGRLNCNVSYTTFATP----VRGQGSDHK--DFSSMLHKALEGAIILETFPKTTVDV 142
G +NC S F+ R D K + S L A+E I LE +P++ +D+
Sbjct: 85 KITKGIVNCQYSMAVFSLSSGERKRKPRGDRKSQERSLQLKHAMEAIIHLELYPRSQIDI 144
Query: 143 FALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDG 202
+ L+ GS+ ++ A++AL DAGI + + +V+ L+ P LE+E D
Sbjct: 145 YVEALQVDGSEYCASVNAATLALIDAGIPIKNYAIGCTVT-----LINCPSLEDE---DN 196
Query: 203 SLMIACMPSRY 213
+L + + Y
Sbjct: 197 TLEKGVLDANY 207
>gi|68466049|ref|XP_722799.1| likely exosome component Ski6p [Candida albicans SC5314]
gi|68466344|ref|XP_722654.1| likely exosome component Ski6p [Candida albicans SC5314]
gi|46444644|gb|EAL03917.1| likely exosome component Ski6p [Candida albicans SC5314]
gi|46444799|gb|EAL04071.1| likely exosome component Ski6p [Candida albicans SC5314]
Length = 240
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 88/163 (53%), Gaps = 6/163 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAV-NSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNI 92
+ LR D R +++ R R NS+ GS+Y E GNTKV+ +V GP E + ++ +S
Sbjct: 7 EGLRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVMCTVQGPIEPALRSQQHSER 66
Query: 93 GRLNCNVSYTTFATPVRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ N++ +F+T R + S ++ + + L K E ++++ +P+T + + VL
Sbjct: 67 ANIEVNLNIASFSTFERKKRSRNERRLVELKTTLEKTFEESVMINLYPRTNIVINVQVLC 126
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLID 191
G L VI+ ++AL DAGI MYD V+ VS + L+D
Sbjct: 127 QDGGMLAAVINSITLALIDAGISMYDYVSGVSCGLYDQTPLLD 169
>gi|46116870|ref|XP_384453.1| hypothetical protein FG04277.1 [Gibberella zeae PH-1]
Length = 283
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 110/236 (46%), Gaps = 34/236 (14%)
Query: 20 PTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNT-------- 71
P T PP+F +D + +R + R + +TG SASGSAY E +
Sbjct: 10 PGGNTVPPVFE-ADESIVPRRTRAANGIRAQYLKTGVTPSASGSAYLEIESQDASGSKGM 68
Query: 72 KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG---QGSDHKDFSSMLHKALEG 128
K+ +V GPR ++ +S L+ +V Y FAT R + S +D SS L AL G
Sbjct: 69 KLTCTVHGPRSLPRSAPFSPHMVLSTHVKYAPFATRQRRGYLRDSSERDLSSHLEAALRG 128
Query: 129 AIILETFPKTTVDVFALVLESG---------GSD----LPVVISCASVALADAGIMMYDL 175
AII + +PK+ VDV V+E GS+ + V+ C +VA A D
Sbjct: 129 AIIADRWPKSGVDVIVTVIEGDQAREVAVEQGSEEWDMMNVLSGCITVAAAALADAGIDC 188
Query: 176 VASVS----VSCLGKN-----LLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTG 222
V +VS LG++ +++DPV E S + +A +P R E+T L + G
Sbjct: 189 VDTVSGGVAALVLGQDNNEPIMVLDPVPSEHSQILAACCVAYLPERDEITNLWLKG 244
>gi|58260288|ref|XP_567554.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134116266|ref|XP_773087.1| hypothetical protein CNBJ0820 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255708|gb|EAL18440.1| hypothetical protein CNBJ0820 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229604|gb|AAW46037.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 268
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 114/228 (50%), Gaps = 14/228 (6%)
Query: 42 RGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSY 101
R + RP F +TG ++ A GS Y E G K+ SV+GPR G LN V +
Sbjct: 37 RTDQESRPIFLKTGLISQAHGSGYIEAGGVKIACSVYGPRPKPPPYSPQ--GTLNLEVKF 94
Query: 102 TTFAT-PVRGQGSDHKDF--SSMLHKALEGAIILETFPKTTVDVFALVLESG--GSDLPV 156
FA+ P R D + S++L + L + L PK+++DV+ LVLES + L
Sbjct: 95 APFASDPRRAPLRDTEPLPLSNLLTQLLLPTLHLHLLPKSSIDVYLLVLESDTLTNVLSA 154
Query: 157 VISCASVALADAGIMMYDLVASVSVSCLG-------KNLLIDPVLEEESYQDGSLMIACM 209
++ AS A+ADAGI M L V+ +G + ++IDP LEEE D +M+ M
Sbjct: 155 GLTVASAAVADAGIEMAGLGVGGVVASVGGDEKQGRRRVVIDPSLEEEKESDVKVMVGTM 214
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASD 257
P+ +VT + +TGE ++ ++AS + ++ L E A +
Sbjct: 215 PALGKVTNIWLTGEAEVDDACNMIEQVIEASKETHSVLAEALVEGAGE 262
>gi|313226557|emb|CBY21703.1| unnamed protein product [Oikopleura dioica]
Length = 216
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 101/208 (48%), Gaps = 13/208 (6%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
+ R D R + R R G + A GSA + GNTKV+ +VFGPR+ A + + +
Sbjct: 7 EGFRFDGRRAAEFRKIQGRLGVFDHADGSAILQQGNTKVLAAVFGPRQPM-ASQHGAVSQ 65
Query: 95 LNC--NVSYT--TFATPVRGQGS--DHK--DFSSMLHKALEGAIILETFPKTTVDVFALV 146
C +V Y+ FA+ R + + D K + S L K E I+ +P++ + +F V
Sbjct: 66 EKCIVDVEYSRAAFASAERKRRARGDKKAQEISLSLKKTFEATILTTLYPRSAISIFVEV 125
Query: 147 LESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKN----LLIDPVLEEESYQDG 202
L++ G D V ++ A++AL DAGI + D+ +VS K+ L+D EES +
Sbjct: 126 LQADGGDYAVCVNAATLALIDAGIPIRDVCCAVSCGVAIKDNVAYSLLDLAYSEESARIP 185
Query: 203 SLMIACMPSRYEVTQLTVTGEWSTPHFN 230
+++ MP E+ V +F
Sbjct: 186 TIVATGMPKTGEMVFFEVESRLHMDYFR 213
>gi|448111337|ref|XP_004201817.1| Piso0_002021 [Millerozyma farinosa CBS 7064]
gi|359464806|emb|CCE88511.1| Piso0_002021 [Millerozyma farinosa CBS 7064]
Length = 278
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 95/203 (46%), Gaps = 28/203 (13%)
Query: 46 QCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNV------ 99
+ R F +TG V++A+GS+Y E N V VSVFGPR + + + C
Sbjct: 39 EVRKVFIKTGLVSNANGSSYIEASNIIVEVSVFGPRPIRGSFTDRASFSVECKFLPYLKQ 98
Query: 100 -SYTTFATPVRGQGSDHKDFSSMLHK-------ALEGAIILETFPKTTVDVFALVLESGG 151
F + + + + HK A I+LE +PK+T+DVF V+ +G
Sbjct: 99 PQEDLFGGDTHANNNGRQGLTEVEHKISQYVETAFLPCILLEKYPKSTIDVFVTVISTGN 158
Query: 152 SDLPV--------VISCASVALADAGIMMYDLVASVSVSCLG--KNLLIDPVLEEESYQD 201
+ P +++C+S+A+ D+GI + D+V S + L + L++DP LE E +D
Sbjct: 159 TTAPSNILNLTNWIVNCSSLAIIDSGIEIKDIVTSGHIKYLKSEERLIVDP-LENEERED 217
Query: 202 GSLMIACMPSRYEVTQLTVTGEW 224
+ C+ S + + G W
Sbjct: 218 A---LDCLVSFESLKNDEIVGLW 237
>gi|344304118|gb|EGW34367.1| hypothetical protein SPAPADRAFT_134338 [Spathaspora passalidarum
NRRL Y-27907]
Length = 272
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 108/241 (44%), Gaps = 34/241 (14%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
+P + P F + + +A+GSAY E GNT + VS+FGPR + + + + C
Sbjct: 26 KPSATNTQSIPPFFLKHSIIENANGSAYLEIGNTLIEVSIFGPRPIRGSFVDHASVSVEC 85
Query: 98 NV--------SYTTFATPVRGQGSDHKDFSSMLHKALEGAI----ILETFPKTTVDVFAL 145
+TF + + + D + LEG I +LE +PK+++DV
Sbjct: 86 KFHPYITPQPQASTFNSAKQTGRTGLTDVEHRISNYLEGCILPCLLLEKYPKSSIDVHVS 145
Query: 146 VLESGGSDLP----------VVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLE 195
++ + DL ++ C SVA D+GI M D++ V G ++I P LE
Sbjct: 146 IISTDRDDLKNNANLLWLMNWIVCCTSVAFVDSGIEMRDVITGGQVRLCGDKVIIHPDLE 205
Query: 196 ----EESYQDGSLMIACMPSRYEVTQLTVTG---EWSTPHFNEAMQLCLDASAKLGKIMR 248
+E DG L + + E+ + + G + ST N+ ++ C K+ KI+R
Sbjct: 206 DDETDEPSVDGLLNFMNLKND-EIVGIWIEGNETDLSTEKMNQLVEEC----KKMSKIIR 260
Query: 249 S 249
+
Sbjct: 261 A 261
>gi|358059015|dbj|GAA95196.1| hypothetical protein E5Q_01851 [Mixia osmundae IAM 14324]
Length = 290
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 94/192 (48%), Gaps = 23/192 (11%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVN--SASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
LR DSR + RP + GSA E G T+V VSV GPRE + A N +
Sbjct: 12 LRLDSRRPLEVRPITCTLDVLKGLEIDGSASVEQGLTRVSVSVCGPREPRAARGAGNARQ 71
Query: 95 ----LNCNVSYTTFATPVRGQGSDHK----------DFSSMLHKALEGAIILETFPKTTV 140
+N + TF+ G D + + +S + E I+ + +P+ +
Sbjct: 72 DRVVINVEIQTATFS------GVDRRKRGRNDRRTVEMASSIKNTFEPVIMGQLYPRAQI 125
Query: 141 DVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQ 200
D++ ++L+ G L I+ S+AL+ AGI M +AS+SV+CL L+DP +EES +
Sbjct: 126 DIYVIILQQDGGTLSAAINATSLALSHAGIAMISPIASISVACLHDTPLLDPCGQEES-E 184
Query: 201 DGSLMIACMPSR 212
L +AC+ +R
Sbjct: 185 LPFLTVACLATR 196
>gi|401625567|gb|EJS43567.1| ski6p [Saccharomyces arboricola H-6]
Length = 246
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 94/173 (54%), Gaps = 15/173 (8%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNS----ASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
LR D R +++ R F + ++N+ A GS+Y E GN K+I V GP+E + K+ M ++
Sbjct: 12 LRLDGRRWNELRR--FES-SINTHPHAADGSSYLEQGNNKIITLVKGPKEPRLKSQMDTS 68
Query: 92 IGRLNCNVSYTTFATPVRGQGSDHKDFSSMLH------KALEGAIILETFPKTTVDVFAL 145
LN +V+ T F+ R + S HK+ +L + E ++L +P+T +D+
Sbjct: 69 KALLNVSVNITRFSKFERSKSS-HKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIH 127
Query: 146 VLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEES 198
VLE G + +I+ ++AL DAGI M+D ++ +SV L+D EE+
Sbjct: 128 VLEQDGGIMGTLINGITLALIDAGISMFDYISGISVGLYDTTPLLDTNSLEEN 180
>gi|401399709|ref|XP_003880615.1| putative 3' exoribonuclease [Neospora caninum Liverpool]
gi|325115026|emb|CBZ50582.1| putative 3' exoribonuclease [Neospora caninum Liverpool]
Length = 214
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 74/135 (54%), Gaps = 3/135 (2%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATP 107
R +T ++ A+GSA+ G TK+ +V+GPR + KA + G +N Y FAT
Sbjct: 2 RTMCLQTHSLAGATGSAFVSVGKTKLNCAVYGPRPNTKAA-SQDRGSINLEFKYAPFATT 60
Query: 108 VRGQGS--DHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVAL 165
+G + D ++LH+A+ + L+ + K+T+ V LVLE G + ++C +AL
Sbjct: 61 SKGACNERDSAHLVTLLHQAVNAVVRLDLYRKSTIAVSVLVLEDDGGVISAALTCIGLAL 120
Query: 166 ADAGIMMYDLVASVS 180
ADAGI M D++ S
Sbjct: 121 ADAGIEMLDVLTGAS 135
>gi|440298821|gb|ELP91452.1| hypothetical protein EIN_155690 [Entamoeba invadens IP1]
Length = 225
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 104/213 (48%), Gaps = 8/213 (3%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R ++ R + G + A GS + TK+I SV + + + + C
Sbjct: 7 RKDGRLPNEVRATEIKIGVIQGAKGSCMVQKNRTKIISSV------QVSSIDESDFEFKC 60
Query: 98 NVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVV 157
VS+ FA + + +L +AL+G ++ E +++ + VLE G V
Sbjct: 61 TVSFPRFAPETPQLKRKEIEATEVLEQALKGRVLPENNSGLKIELKSFVLEEDGGVKDSV 120
Query: 158 ISCASVALADAGIMMYDLVASVSVSCLG--KNLLIDPVLEEESYQDGSLMIACMPSRYEV 215
I+ ++AL DA + + D++ + SV + K L+DP +EE + GS++IA +PS +
Sbjct: 121 ITSGALALFDADVRIDDIIIASSVVKMNNFKRCLVDPTSQEEDDKVGSVLIASVPSTNSI 180
Query: 216 TQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMR 248
TQ+ ++G +E + + +D K+ +I++
Sbjct: 181 TQIFMSGVLQPNDISECLAVAMDECWKINEIVQ 213
>gi|365760507|gb|EHN02222.1| Ski6p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401840726|gb|EJT43427.1| SKI6-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 246
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 37 LRPDSRGFHQCR--PAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
LR D R +++ R + T + ++A GS+Y E GN K+I V GP+E + K+ M ++
Sbjct: 12 LRLDGRRWNELRRFESSINTHS-HAADGSSYLEQGNNKIITLVKGPKEPRLKSQMDTSKA 70
Query: 94 RLNCNVSYTTFATPVRGQGSDHKDFSSMLH------KALEGAIILETFPKTTVDVFALVL 147
LN +V+ T F+ R + S HK+ +L + E ++L +P+T +D+ VL
Sbjct: 71 LLNVSVNITKFSKFERSKSS-HKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVL 129
Query: 148 ESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEES 198
E G + +I+ ++AL DAGI M+D ++ +SV L+D EE+
Sbjct: 130 EQDGGIMGSLINGITLALIDAGISMFDYISGISVGLYDTTPLLDTNSLEEN 180
>gi|50307027|ref|XP_453491.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642625|emb|CAH00587.1| KLLA0D09625p [Kluyveromyces lactis]
Length = 245
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 111/226 (49%), Gaps = 12/226 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAV-NSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGR 94
LR D R +++ R N+A GS+Y E GN K+I V GP+E S ++ + +
Sbjct: 12 LRVDGRRWNELRSFNCSINTHPNAADGSSYLEQGNNKIITLVAGPQEPSSRSQVNTKQAT 71
Query: 95 LNCNVSYTTFATPVRGQGSDHKD------FSSMLHKALEGAIILETFPKTTVDVFALVLE 148
L+ ++ T FA R + S HK+ + + L + E ++L +P+T++DV L+
Sbjct: 72 LSVTINLTKFAKMERSKSS-HKNERRTLEWQASLVRTFEKNLMLHLYPRTSIDVQVHALQ 130
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLID-PVLEEESYQDGSLMIA 207
G L +++ ++AL DAGI MYD V+ VSV L+D LEE + S+ I
Sbjct: 131 LDGGILGAMLNGITLALIDAGIAMYDFVSGVSVGLYDTTPLLDLNSLEENAMS--SVTIG 188
Query: 208 CMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
+ +++ L V + M + + + ++ +M L++
Sbjct: 189 TIGKSEKLSLLMVEDKVPLDRLESVMAIGIAGTHRIRDLMDKELRK 234
>gi|448262634|pdb|4IFD|B Chain B, Crystal Structure Of An 11-subunit Eukaryotic Exosome
Complex Bound To Rna
Length = 248
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 94/173 (54%), Gaps = 15/173 (8%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNS----ASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
LR D R +++ R F + ++N+ A GS+Y E GN K+I V GP+E + K+ M ++
Sbjct: 14 LRLDGRRWNELRR--FES-SINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTS 70
Query: 92 IGRLNCNVSYTTFATPVRGQGSDHKDFSSMLH------KALEGAIILETFPKTTVDVFAL 145
LN +V+ T F+ R + S HK+ +L + E ++L +P+T +D+
Sbjct: 71 KALLNVSVNITKFSKFERSKSS-HKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIH 129
Query: 146 VLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEES 198
VLE G + +I+ ++AL DAGI M+D ++ +SV L+D EE+
Sbjct: 130 VLEQDGGIMGSLINGITLALIDAGISMFDYISGISVGLYDTTPLLDTNSLEEN 182
>gi|398366099|ref|NP_011711.3| Ski6p [Saccharomyces cerevisiae S288c]
gi|1176073|sp|P46948.1|RRP41_YEAST RecName: Full=Exosome complex component SKI6; AltName:
Full=Extracellular mutant protein 20; AltName:
Full=Ribosomal RNA-processing protein 41; AltName:
Full=Superkiller protein 6
gi|791127|emb|CAA58018.1| G7587 [Saccharomyces cerevisiae]
gi|1323347|emb|CAA97221.1| unnamed protein product [Saccharomyces cerevisiae]
gi|45270908|gb|AAS56835.1| YGR195W [Saccharomyces cerevisiae]
gi|151943471|gb|EDN61782.1| superkiller [Saccharomyces cerevisiae YJM789]
gi|207345003|gb|EDZ71963.1| YGR195Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256271491|gb|EEU06540.1| Ski6p [Saccharomyces cerevisiae JAY291]
gi|259146697|emb|CAY79954.1| Ski6p [Saccharomyces cerevisiae EC1118]
gi|285812388|tpg|DAA08288.1| TPA: Ski6p [Saccharomyces cerevisiae S288c]
gi|323304789|gb|EGA58548.1| Ski6p [Saccharomyces cerevisiae FostersB]
gi|323333367|gb|EGA74763.1| Ski6p [Saccharomyces cerevisiae AWRI796]
gi|323337488|gb|EGA78736.1| Ski6p [Saccharomyces cerevisiae Vin13]
gi|323348458|gb|EGA82703.1| Ski6p [Saccharomyces cerevisiae Lalvin QA23]
gi|323354862|gb|EGA86695.1| Ski6p [Saccharomyces cerevisiae VL3]
gi|349578400|dbj|GAA23566.1| K7_Ski6p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365765457|gb|EHN06965.1| Ski6p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299448|gb|EIW10542.1| Ski6p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 246
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 94/173 (54%), Gaps = 15/173 (8%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNS----ASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
LR D R +++ R F + ++N+ A GS+Y E GN K+I V GP+E + K+ M ++
Sbjct: 12 LRLDGRRWNELRR--FES-SINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTS 68
Query: 92 IGRLNCNVSYTTFATPVRGQGSDHKDFSSMLH------KALEGAIILETFPKTTVDVFAL 145
LN +V+ T F+ R + S HK+ +L + E ++L +P+T +D+
Sbjct: 69 KALLNVSVNITKFSKFERSKSS-HKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIH 127
Query: 146 VLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEES 198
VLE G + +I+ ++AL DAGI M+D ++ +SV L+D EE+
Sbjct: 128 VLEQDGGIMGSLINGITLALIDAGISMFDYISGISVGLYDTTPLLDTNSLEEN 180
>gi|47848476|dbj|BAD22331.1| putative exosome component 4 [Oryza sativa Japonica Group]
gi|47848647|dbj|BAD22495.1| putative exosome component 4 [Oryza sativa Japonica Group]
Length = 245
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 104/237 (43%), Gaps = 34/237 (14%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-------------S 83
R D R ++ R G V A GSA E GNT+VI +V+GPRE S
Sbjct: 10 FRVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVAAHPDYWLVRLIS 69
Query: 84 KKAMMYSNIGRLNCNVSYTT--------FATPVRGQG--SDHK--DFSSMLHKALEGAII 131
KKA GR VS +T F+T R + D + + S ++ + +E +I+
Sbjct: 70 KKAKREGLRGRSRTKVSKSTAKMLWMADFSTGDRRRKPKGDRRSTEISLVIRQTMEASIL 129
Query: 132 LETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLID 191
P++ +D+F VL++ G I+ A++ALADAGI M D+V S S D
Sbjct: 130 THLMPRSQIDIFVQVLQADGGTRAACINAATLALADAGIPMRDIVTSCSA---------D 180
Query: 192 PVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMR 248
E+S + + + +VT L + + F M L ++ + +R
Sbjct: 181 LNYIEDSAGGPDVTVGFLTKMDKVTLLQMDAKLPMDTFETVMDLAIEGCKAIANYIR 237
>gi|190406796|gb|EDV10063.1| exosome complex exonuclease RRP41 [Saccharomyces cerevisiae
RM11-1a]
Length = 246
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 94/173 (54%), Gaps = 15/173 (8%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNS----ASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
LR D R +++ R F + ++N+ A GS+Y E GN K+I V GP+E + K+ M ++
Sbjct: 12 LRLDGRRWNELRR--FES-SINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTS 68
Query: 92 IGRLNCNVSYTTFATPVRGQGSDHKDFSSMLH------KALEGAIILETFPKTTVDVFAL 145
LN +V+ T F+ R + S HK+ +L + E ++L +P+T +D+
Sbjct: 69 KALLNVSVNITKFSKFERSKSS-HKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIH 127
Query: 146 VLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEES 198
VLE G + +I+ ++AL DAGI M+D ++ +SV L+D EE+
Sbjct: 128 VLEQDGGIMGSLINGITLALIDAGISMFDYISGISVGLYDTTPLLDTNSLEEN 180
>gi|403218498|emb|CCK72988.1| hypothetical protein KNAG_0M01350 [Kazachstania naganishii CBS
8797]
Length = 247
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 84/163 (51%), Gaps = 9/163 (5%)
Query: 37 LRPDSRGFHQCR--PAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIG 93
LR D R +++ R A T A +SA GS+Y E GN KV+ V GP E + + +
Sbjct: 12 LRLDGRRWNELRRFQASISTHA-HSADGSSYLEQGNNKVVTLVRGPGEPASRGQLDGQRA 70
Query: 94 RLNCNVSYTTFATPVRGQGSDHKD-----FSSMLHKALEGAIILETFPKTTVDVFALVLE 148
L +V+ T F+ R + S + + L + E A +L +P+T +DV VLE
Sbjct: 71 TLRVSVNVTKFSKFERSRTSHRNERRVLEIQTSLRRTFEKACLLHLYPRTAIDVELHVLE 130
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLID 191
G L +I+ ++AL DAG+ M+D VA VSV + L+D
Sbjct: 131 QDGGVLGAMINGITLALVDAGVAMWDYVAGVSVGLHDQTPLLD 173
>gi|239614072|gb|EEQ91059.1| 3' exoribonuclease [Ajellomyces dermatitidis ER-3]
gi|327353426|gb|EGE82283.1| 3' exoribonuclease [Ajellomyces dermatitidis ATCC 18188]
Length = 350
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 85/319 (26%), Positives = 132/319 (41%), Gaps = 80/319 (25%)
Query: 20 PTRKTRPPIFSGS--------DVDWLRP-DSRGFHQCRPAFFRTGAVNSASGSAYAEF-- 68
P TRPP+F+ S V RP +R + R F +TG + SASGSAY EF
Sbjct: 10 PPGSTRPPVFASSLLSSDGQRSVALERPIRTRKPDELRKIFLKTGLIPSASGSAYLEFQP 69
Query: 69 ----------------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG-- 110
+ K+ SV GP+ ++ +S L+ +V + FA+ R
Sbjct: 70 SAILHRSKSKTLIPPSSSLKLTCSVHGPKPLPRSAPFSPNLLLSTHVKFAPFASRRRRGY 129
Query: 111 -QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES---------------GGSD- 153
+ + +D L AL G II E +PK+ +D+ VLE GG D
Sbjct: 130 IRDVNERDLGVHLETALRGVIIGERWPKSGLDITVTVLEGEDDRWWGDVLSSGPLGGIDG 189
Query: 154 ------LPVVISCASVALADAGIMMYDLVA-------------------SVSVSCLGKNL 188
L I+ AS A+ADA I DL+ + S G++L
Sbjct: 190 WGLMNVLAGCITVASAAIADARIDCMDLITGGIAAFVENPDVDTSERANTSSKKGRGQSL 249
Query: 189 LIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQ-------LCLDASA 241
++DP E + ++ MPSR E+T+L + G+ T + + +Q +DA+
Sbjct: 250 VLDPDPSEHQVIVSACVVGYMPSRDEITELWLKGD--TSNISAGLQSPSASHEALIDAAV 307
Query: 242 KLGKIMRSCLKEAASDEQE 260
+ ++ L EA + E
Sbjct: 308 DAARGAQAVLAEAVRESAE 326
>gi|444322810|ref|XP_004182046.1| hypothetical protein TBLA_0H02430 [Tetrapisispora blattae CBS 6284]
gi|387515092|emb|CCH62527.1| hypothetical protein TBLA_0H02430 [Tetrapisispora blattae CBS 6284]
Length = 245
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 92/170 (54%), Gaps = 11/170 (6%)
Query: 37 LRPDSRGFHQCR--PAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
LR D R +++ R T A +++ GS+Y E GN KVI V GP+E K+ +
Sbjct: 12 LRQDGRRWNELRRFDCSINTHA-HTSDGSSYLEQGNNKVITIVKGPQEPPLKSQLDQTKA 70
Query: 94 RLNCNVSYTTFATPVRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVL 147
LN +++ T F+ R + + HK + ++L K + I++ +P+T +D+ VL
Sbjct: 71 TLNISLNITPFSKFERSK-TQHKNEKRILELQTILIKTFKKNILMHLYPRTLIDIQIHVL 129
Query: 148 ESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEE 197
+ GS L +I+ ++AL DAGI +YD ++ +S+ + L+D +EE
Sbjct: 130 QQDGSLLSCLINGITLALIDAGIAIYDFISGISIGLFNETPLLDLNSQEE 179
>gi|321262691|ref|XP_003196064.1| 3'-to-5' phosphorolytic exoribonuclease; Ski6p [Cryptococcus gattii
WM276]
gi|317462539|gb|ADV24277.1| 3'-to-5' phosphorolytic exoribonuclease, putative; Ski6p
[Cryptococcus gattii WM276]
Length = 262
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 108/222 (48%), Gaps = 6/222 (2%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSN----I 92
LR D+R ++ R F+ S+ GS+ A G T V+VSVFGPRE + + S+ +
Sbjct: 14 LRQDARRPYELRSTSFQLSTHPSSDGSSTATQGLTTVVVSVFGPREPRNRSLASHDRAVV 73
Query: 93 GRLNCNVSYTTFATPVRGQGSDH-KDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
V + A R +G ++ + + + E I+ +P++ + + VL + G
Sbjct: 74 SVEVGVVPWAAGAGARRTRGDKRLQEIGAAIRQTFEPVIMTHLYPRSEIAIHVQVLSADG 133
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS 211
LP I+ ++AL DAGI + D V+S+S+ L+D EES SL+IA +PS
Sbjct: 134 GILPTSINATTLALIDAGISLLDYVSSISIGLHLLQPLLDLSQPEESDLP-SLVIASLPS 192
Query: 212 RYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
++T + F E + L ++A L + M +K+
Sbjct: 193 SGKITLAQMETRLHVDRFEEMLTLGVEACKVLKEEMDGVVKD 234
>gi|302672677|ref|XP_003026026.1| hypothetical protein SCHCODRAFT_80065 [Schizophyllum commune H4-8]
gi|300099706|gb|EFI91123.1| hypothetical protein SCHCODRAFT_80065 [Schizophyllum commune H4-8]
Length = 259
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 102/222 (45%), Gaps = 8/222 (3%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLN 96
R D R ++ R SA GSA G T+V+VSV+GPRE K ++ + +N
Sbjct: 14 RSDGRKQYELRDMTIDLSPRASADGSALVSHGLTQVLVSVYGPREPKQRSQSAHDRATIN 73
Query: 97 CNVSYTTFAT----PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
V F++ ++ + + E ++ +P++T+DVF +L+ GS
Sbjct: 74 VEVGTAPFSSGERRKRGRGDKRTQELCYTVQQTFEPVVLTSIYPRSTIDVFITILQQDGS 133
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLID-PVLEEESYQDGSLMIACMPS 211
+P I+ ++AL AG+ + D V +VS ++D LEE + A MP
Sbjct: 134 LIPACINATTLALICAGVPLLDFVCAVSAGVHDTESMLDLTTLEENDLP--WVNAAVMPK 191
Query: 212 RYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
+V + + F E ++ LDA+ L + M++ +++
Sbjct: 192 TGKVVMVGLETRLHVQRFEEMFRIALDAAKVLHQEMKAAIQD 233
>gi|261204769|ref|XP_002629598.1| 3' exoribonuclease [Ajellomyces dermatitidis SLH14081]
gi|239587383|gb|EEQ70026.1| 3' exoribonuclease [Ajellomyces dermatitidis SLH14081]
Length = 350
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 132/317 (41%), Gaps = 76/317 (23%)
Query: 20 PTRKTRPPIFSGS--------DVDWLRP-DSRGFHQCRPAFFRTGAVNSASGSAYAEF-- 68
P TRPP+F+ S V RP +R + R F +TG + SASGSAY EF
Sbjct: 10 PPGSTRPPVFASSLLSSDGQRSVALERPIRTRKPDELRKIFLKTGLIPSASGSAYLEFQP 69
Query: 69 ----------------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG-- 110
+ K+ SV GP+ ++ +S L+ +V + FA+ R
Sbjct: 70 SAILHRSKSKTLIPPSSSLKLTCSVHGPKPLPRSAPFSPNLLLSTHVKFAPFASRRRRGY 129
Query: 111 -QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES---------------GGSD- 153
+ + +D L AL G II E +PK+ +D+ VLE GG D
Sbjct: 130 IRDVNERDLGVHLETALRGVIIGERWPKSGLDITVTVLEGEDDRWWGDVLSSGPLGGIDG 189
Query: 154 ------LPVVISCASVALADAGIMMYDLVA-------------------SVSVSCLGKNL 188
L I+ AS A+ADA I DL+ + S G++L
Sbjct: 190 WGLMNVLAGCITVASAAIADARIDCMDLITGGIAAFVENPDVDTSERANTSSKKGRGQSL 249
Query: 189 LIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWS-----TPHFNEAMQLCLDASAKL 243
++DP E + ++ MPSR E+T+L + G+ S + + + + +DA+
Sbjct: 250 VLDPDPSEHQVIVSACVVGYMPSRDEITELWLKGDTSNISAGSQSPSASHEALIDAAVDA 309
Query: 244 GKIMRSCLKEAASDEQE 260
+ ++ L EA + E
Sbjct: 310 ARGAQAVLAEAVRESAE 326
>gi|403418005|emb|CCM04705.1| predicted protein [Fibroporia radiculosa]
Length = 280
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 114/252 (45%), Gaps = 21/252 (8%)
Query: 21 TRKTRPPIFS--GSDVDWL-----RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV 73
+R+T I GS V+ L R D R ++ R +A GSA G T+V
Sbjct: 4 SRRTERQILKVMGSRVEILNDGGYRSDGRRQYELRDITIDLSQQGTADGSALMTHGLTQV 63
Query: 74 IVSVFGPRESK-KAMMYSNIGRLNCNVSYTTFATPVRGQGSDHK-------DFSSMLHKA 125
+ +VFGPRE++ ++ + +N V+ + F+T G+ + ++ +
Sbjct: 64 LATVFGPREARVRSQTLHDRAVINVEVNVSPFST---GERRRRGRADRRVLELAATIKST 120
Query: 126 LEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLG 185
E + +P++ +D+F VL+ G L I+ ++AL AGI + D V +VS
Sbjct: 121 FEPVVQTNLYPRSQIDIFLHVLQQDGGLLHACINATTLALVTAGIPLLDFVCAVSGGVHS 180
Query: 186 KNLLID-PVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLG 244
+ ++D LEE + L +A MP +VT +T+ F E +L A +
Sbjct: 181 TSPMLDLTTLEENDLPN--LTVAIMPKTKKVTLVTLDTRLHVDRFAEIFELACVAGQIIH 238
Query: 245 KIMRSCLKEAAS 256
K M+ +KE S
Sbjct: 239 KEMKHAVKERTS 250
>gi|392577921|gb|EIW71049.1| hypothetical protein TREMEDRAFT_27507 [Tremella mesenterica DSM
1558]
Length = 263
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 118/242 (48%), Gaps = 24/242 (9%)
Query: 27 PIFSGSDV---DWLRPDSRGFH--QCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPR 81
P F S + + L GFH +P F+ G ++ A+GS Y E G K+ SV+GPR
Sbjct: 18 PTFESSSIIVDNGLGTGDDGFHVGSSQP-VFKAGLIDQANGSGYVEIGGVKIACSVYGPR 76
Query: 82 ESKKAMMYSNIGRLNCNVSYTTFAT-PVRGQGSDHKDF--SSMLHKALEGAIILETFPKT 138
K YS G LN + + FA+ P R D + S++L++ L + L PK+
Sbjct: 77 --PKQPPYSPEGTLNLEIKFAPFASHPRRAPLRDTEPIPLSTLLYRLLLPCLQLHLLPKS 134
Query: 139 TVDVFALVLESG--GSDLPVVISCASVALADAGIMMYDL-VASVSVSCLG------KNLL 189
++DVF L+LES + L ++ AS A+A+AGI M L + V G L+
Sbjct: 135 SIDVFLLILESDTLSNTLSAALTVASGAIANAGIPMSALGIGGVVARGEGAGGEKRSELI 194
Query: 190 IDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRS 249
DP +EEE+ + L + MP+ +++ TGE E + L +D + K K+ +
Sbjct: 195 CDPSIEEENSAEACLTLGVMPALGKLSSCWFTGEADV----EDVGLMVDCAVKETKMTHA 250
Query: 250 CL 251
L
Sbjct: 251 VL 252
>gi|41615042|ref|NP_963540.1| exosome complex exonuclease Rrp41 [Nanoarchaeum equitans Kin4-M]
gi|40068766|gb|AAR39101.1| NEQ248 [Nanoarchaeum equitans Kin4-M]
Length = 233
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 110/243 (45%), Gaps = 39/243 (16%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVF---GPRESKKAMMYSNIG 93
+R D R +++ R + G ++ A GSAY GNT I +V+ G +S
Sbjct: 1 MRFDGRDYNEIRDTEMKIGVISKADGSAYCRTGNTIAIAAVYLKPGREQS---------- 50
Query: 94 RLNCNVSYTT--FATPVR-GQGSDHKD--FSSMLHKALEGAIILETFPKTTVDVFALVLE 148
N VSY FA R G G ++ S ++ KALE AII E P T++ +++
Sbjct: 51 --NLKVSYRMLPFAGEERKGLGLTRREIELSYIIAKALEPAIIFEEIPYLTIEASVEIIK 108
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ I+ S+ALA AGI M LV +++V +G+ +++D +EE Y D ++
Sbjct: 109 ADAGTRVAAINALSLALAHAGIPMKALVGAIAVGKVGEKIVLDLNKQEEDY-DSEIIKKE 167
Query: 209 MPSRYE------------------VTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSC 250
+P YE +T L + G EA++L D ++ + +
Sbjct: 168 LPQYYEYYGEGKAVDIPMAMYKNKITLLQLDGSIDRKSLLEAIKLGKDGIKRMIDLQKIA 227
Query: 251 LKE 253
+++
Sbjct: 228 IED 230
>gi|47220383|emb|CAF98482.1| unnamed protein product [Tetraodon nigroviridis]
Length = 291
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 111/274 (40%), Gaps = 56/274 (20%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE--------------- 82
R D R + R R G A GSAY E GNTK + V+GP E
Sbjct: 13 RIDGRKATELRKIQARMGVFAQADGSAYLEQGNTKALAVVYGPHEVCVCVCVCVCVCVCQ 72
Query: 83 --SKKAMMYSNIGRLNCNVSYTTFATPVRGQ--GSDHKDFSSMLH--KALEGAIILETFP 136
++ + +NC S TF+T R + D K LH + E A++ + FP
Sbjct: 73 MRGSRSRARHDRAVINCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFEAAVMTQLFP 132
Query: 137 KTTVDVFALV-------------------------------LESGGSDLPVVISCASVAL 165
++ +D++ V L+S G + V ++ A++A+
Sbjct: 133 RSQIDIYVKVGLVLMFSLLESRLSQAFYLSVMDKDPPCLQILQSDGGNYSVCVNAATLAV 192
Query: 166 ADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWS 225
DAGI M D V + +V + + L D EES SL +A +P ++ + +
Sbjct: 193 IDAGIPMRDYVCACTVGFVDETPLADLCYAEESGGVSSLGLALLPRGGQIALVQMDARLH 252
Query: 226 TPHFN----EAMQLCLDASAKLGKIMRSCLKEAA 255
+ + AM C S L +++R L+EA+
Sbjct: 253 QDNLDALMEAAMTACKGVSKVLDEVVRQHLQEAS 286
>gi|240282271|gb|EER45774.1| 3' exoribonuclease [Ajellomyces capsulatus H143]
Length = 350
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/279 (29%), Positives = 121/279 (43%), Gaps = 73/279 (26%)
Query: 20 PTRKTRPPIFSGSD--------VDWLRP-DSRGFHQCRPAFFRTGAVNSASGSAYAEF-- 68
P TRPP+F+ S V RP +R H+ R F +TG + SASGSAY EF
Sbjct: 10 PPGGTRPPVFASSLLSSDGQHCVALERPIRTRKQHELRRIFLKTGLIPSASGSAYLEFQP 69
Query: 69 ----------------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQG 112
+ K+I S+ GP+ ++ +S L+ +V + FA+ R +G
Sbjct: 70 SSFIARSKLKTLIPPSSSLKLICSIHGPKPLPRSAPFSPNLLLSTHVKFAPFASRRR-RG 128
Query: 113 S----DHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES---------------GGSD 153
+ + +D L AL GAII E +PK+ +D+ VLE G D
Sbjct: 129 NIRDVNERDLGVHLETALRGAIIAERWPKSGLDITVTVLEGEDDCWWGDVLSPGPLGSVD 188
Query: 154 -------LPVVISCASVALADAGIMMYDL--------VASVSVSCLGK-----------N 187
L I+ AS A+ADA I DL V S +V G+ +
Sbjct: 189 GWGLMNVLAGCITVASAAIADARIDCMDLITGGVAAFVESPNVEASGRTKDSSQRGHGYS 248
Query: 188 LLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWST 226
L++DP E + ++ MPSR E+T+L + G+ S
Sbjct: 249 LVLDPDPSEHLGIVSACVVGYMPSRDEITELWLKGDTSN 287
>gi|66802544|ref|XP_635144.1| hypothetical protein DDB_G0291328 [Dictyostelium discoideum AX4]
gi|60463463|gb|EAL61648.1| hypothetical protein DDB_G0291328 [Dictyostelium discoideum AX4]
Length = 247
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 109/232 (46%), Gaps = 11/232 (4%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE---SKKAMMYSN 91
+ LR D R ++ R G A GSAY E GNTK+I +V+GPRE S K +
Sbjct: 10 EGLRIDGRRANELRRINVEMGIFKRADGSAYYEQGNTKIIAAVYGPREISVSGKGVFDRA 69
Query: 92 IGRLNCNVSYTTFATPVRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFAL 145
+ + C S ++F+T R K + ++++ +A E I +P++ ++++
Sbjct: 70 V--VKCEFSSSSFSTTERKPQQKTKGDRVTTEIANLVKQAFESTIHTHLYPRSQINIYLQ 127
Query: 146 VLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLM 205
VL+S G I+ +++AL DAGI M D + + S SC+ ++D EE +
Sbjct: 128 VLQSDGGLKAAAINASTLALIDAGISMKDFICACSTSCIDGIAVLDLNNIEERSGGPDCL 187
Query: 206 IACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASD 257
++ P V L + + F ++L K+ I+ +K+ S+
Sbjct: 188 LSIQPQIGGVISLNMDSKVPQDLFESVLELGEKGCKKIFSILSDYVKKYCSN 239
>gi|406603483|emb|CCH45039.1| Polyribonucleotide nucleotidyltransferase [Wickerhamomyces
ciferrii]
Length = 245
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 87/161 (54%), Gaps = 6/161 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAV-NSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIGR 94
LR D R +++ R R NS+ GS+Y E GN+K++ V GP E KA + +
Sbjct: 12 LRMDGRRWNELRRFDCRINTHPNSSDGSSYVEQGNSKIVCIVNGPMEPPTKAQLSTTGAT 71
Query: 95 LNCNVSYTTFATPVRGQGSDH----KDFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
LN N++ T F++ R + S + ++ + L + E +II++ +P+TT+ + VL
Sbjct: 72 LNLNLNVTPFSSIDRKKRSKNERRIQEIITSLKRTFEQSIIIDKYPRTTISINVHVLSLD 131
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLID 191
G + + + ++AL DAGI MY+ +++VS L+D
Sbjct: 132 GGLISSITNAITLALIDAGIAMYEYISAVSAGWYDNTPLLD 172
>gi|325088410|gb|EGC41720.1| 3' exoribonuclease [Ajellomyces capsulatus H88]
Length = 350
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/279 (29%), Positives = 121/279 (43%), Gaps = 73/279 (26%)
Query: 20 PTRKTRPPIFSGSD--------VDWLRP-DSRGFHQCRPAFFRTGAVNSASGSAYAEF-- 68
P TRPP+F+ S V RP +R H+ R F +TG + SASGSAY EF
Sbjct: 10 PPGGTRPPVFASSLLSSDGQHCVALERPVRTRKQHELRRIFLKTGLIPSASGSAYLEFQP 69
Query: 69 ----------------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQG 112
+ K+I S+ GP+ ++ +S L+ +V + FA+ R +G
Sbjct: 70 SSFIARSKLKTLIPPSSSLKLICSIHGPKPLPRSAPFSPNLLLSTHVKFAPFASRRR-RG 128
Query: 113 S----DHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES---------------GGSD 153
+ + +D L AL GAII E +PK+ +D+ VLE G D
Sbjct: 129 NIRDVNERDLGVHLETALRGAIIAERWPKSGLDITVTVLEGEDDCWWGDVLSPGPLGSVD 188
Query: 154 -------LPVVISCASVALADAGIMMYDL--------VASVSVSCLGK-----------N 187
L I+ AS A+ADA I DL V S +V G+ +
Sbjct: 189 GWGLMNVLAGCITVASAAIADARIDCMDLITGGVAAFVESPNVEASGRTKDSSQRGHGYS 248
Query: 188 LLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWST 226
L++DP E + ++ MPSR E+T+L + G+ S
Sbjct: 249 LVLDPDPSEHLGIVSACVVGYMPSRDEITELWLKGDTSN 287
>gi|345571085|gb|EGX53900.1| hypothetical protein AOL_s00004g559 [Arthrobotrys oligospora ATCC
24927]
Length = 335
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 84/296 (28%), Positives = 133/296 (44%), Gaps = 58/296 (19%)
Query: 20 PTRKTRPPIF-SGSDVDWLRPD--SRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVS 76
P+ T PP+F S S ++P SR + R F RTG ++S +GS++ E K+ VS
Sbjct: 14 PSHGTTPPVFLSSSSSGAVKPKQSSRSPDEIRKIFLRTGLISSVTGSSFLEIAPLKLSVS 73
Query: 77 VFGPRESKK--AMMYSNIGRLNCNVSYTTFATPVRG---QGSDHKDFSSMLHKALEGAII 131
V GPR + + ++ L V + FA+ VR + S +D S L++AL GAI
Sbjct: 74 VLGPRPLPRTSSTPFAAQAILTTEVKFAPFASTVRRGYIRDSSERDLGSRLYQALVGAIR 133
Query: 132 LETFPKTTVDVFALVLESG--GSDLPVV------------------------------IS 159
E +PK+ ++V +L+S G D+ V I+
Sbjct: 134 RELYPKSRIEVVVTILDSEDEGDDVNTVYIEEGKTTVETKFWDAGRSERALGVVLAGCIT 193
Query: 160 CASVALADAGIMMYDLVASV-------SVSCLGKN---------LLIDP--VLEEESYQD 201
AS ALADAGI M+DLV+ V+ GK+ + DP L E
Sbjct: 194 AASAALADAGIEMFDLVSGGVATSFVDEVNSKGKDKGDAVSNKLYVRDPAIALPEGKTPL 253
Query: 202 GSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASD 257
+ ++ M +R E+++L ++G+ T + M +D + + R L EAA +
Sbjct: 254 ATCVLGYMAARDEISELWISGKVGTKNGTTEMDELVDEAIAAARSARGVLNEAAKE 309
>gi|313240640|emb|CBY32963.1| unnamed protein product [Oikopleura dioica]
Length = 216
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 99/198 (50%), Gaps = 13/198 (6%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
+ R D R + R R G + A GSA + GNTKV+ +VFGPR+ A + + +
Sbjct: 7 EGFRFDGRRAAEFRKIQGRLGVFDHADGSAILQQGNTKVLAAVFGPRQPM-ASQHGAVSQ 65
Query: 95 LNC--NVSYT--TFATPVRGQGS--DHK--DFSSMLHKALEGAIILETFPKTTVDVFALV 146
C +V Y+ FA+ R + + D K + S L K E I+ +P++ + +F V
Sbjct: 66 EKCIVDVEYSRAAFASAERKRRARGDKKAQEISLSLKKTFEATILTTLYPRSAISIFVEV 125
Query: 147 LESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKN----LLIDPVLEEESYQDG 202
L++ G D V ++ A++AL DAGI + D+ +VS K+ L+D EES +
Sbjct: 126 LQADGGDYAVCVNAATLALIDAGIPIRDVCCAVSCGVAIKDNVAYSLLDLAYSEESARIP 185
Query: 203 SLMIACMPSRYEVTQLTV 220
+++ MP E+ V
Sbjct: 186 TIVATGMPKTGEMVFFEV 203
>gi|50288675|ref|XP_446767.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526075|emb|CAG59694.1| unnamed protein product [Candida glabrata]
Length = 246
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 88/168 (52%), Gaps = 15/168 (8%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNS----ASGSAYAEFGNTKVIVSVFGPRE-SKKAMMY 89
+ LR D R +++ R F + A+N+ A GS+Y E GN KVI V GP+E + K+ M
Sbjct: 10 EGLRLDGRRWNELRR--FES-AINTHPHAADGSSYLEQGNNKVITLVKGPKEPTLKSQMD 66
Query: 90 SNIGRLNCNVSYTTFATPVRGQGSDHKDFSSMLH------KALEGAIILETFPKTTVDVF 143
L V+ T F+ R + S HK+ +L + E ++L +P+T +D+
Sbjct: 67 IQKAILKVTVNITKFSKFERSKSS-HKNERRVLEMQTALVRTFEKNVMLHVYPRTLIDIE 125
Query: 144 ALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLID 191
VL+ G + +++ S+AL DAGI MYD V+ +SV L+D
Sbjct: 126 IHVLQQDGGIMGTLLNGISLALIDAGIAMYDYVSGISVGLYDTTPLLD 173
>gi|266618485|pdb|2WP8|B Chain B, Yeast Rrp44 Nuclease
Length = 246
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 93/173 (53%), Gaps = 15/173 (8%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNS----ASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
LR D R +++ R F + ++N+ A GS+Y E GN K+I V GP+E + K+ M ++
Sbjct: 12 LRLDGRRWNELRR--FES-SINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTS 68
Query: 92 IGRLNCNVSYTTFATPVRGQGSDHKDFSSMLH------KALEGAIILETFPKTTVDVFAL 145
LN +V+ F+ R + S HK+ +L + E ++L +P+T +D+
Sbjct: 69 KALLNVSVNINKFSKFERSKSS-HKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIH 127
Query: 146 VLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEES 198
VLE G + +I+ ++AL DAGI M+D ++ +SV L+D EE+
Sbjct: 128 VLEQDGGIMGSLINGITLALIDAGISMFDYISGISVGLYDTTPLLDTNSLEEN 180
>gi|343426755|emb|CBQ70283.1| probable exosome complex exonuclease rrp41 [Sporisorium reilianum
SRZ2]
Length = 272
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 106/225 (47%), Gaps = 10/225 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVN--SASGSAYAEFGNTKVIVSVFGPRESKK-AMMYSNIG 93
R D R ++ R + G +A GSA G T V +VFGPRE++ A + +
Sbjct: 12 FRVDGRKQYELRSIAIQLGGSQDTAADGSAQITQGLTIVSATVFGPREARSGANVIHDRA 71
Query: 94 RLNCNVSYTTFATPVRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
LN VS + + R + + +F+S + E I +P++ +D+F V +
Sbjct: 72 SLNVEVSLAPWGSMERRRRNRGDRRLLEFASSIKSTFEPVIHTHLYPRSQIDIFVQVHQQ 131
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQD-GSLMIAC 208
G LP I+ +++AL DA I M+D VASVS + ++D EE QD L +A
Sbjct: 132 DGGVLPAAINASTLALLDASIAMHDFVASVSCGIHSTSAMLDLSNTEE--QDLPHLTVAV 189
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
+P +VT ++ F + L ++A+A L M +++
Sbjct: 190 LPRTKQVTLASLETRLHVERFEQIFTLAIEAAAVLHNEMELAVRD 234
>gi|440639242|gb|ELR09161.1| hypothetical protein GMDG_03739 [Geomyces destructans 20631-21]
Length = 343
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 131/306 (42%), Gaps = 71/306 (23%)
Query: 20 PTRKTRPPIFSGSDVDWLRPDSR-----GFHQCRPAFFRTGAVNSASGSAYAE------- 67
P+ T PP+F+GSD SR + R F +TG SASGSAY E
Sbjct: 35 PSCGTAPPLFTGSDGSSPETKSRLARTRAPNVIRKIFLKTGVTPSASGSAYLECESQPKS 94
Query: 68 ---------FGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVR---GQGSDH 115
K+ +V GPR ++ +S L +V Y FAT R +
Sbjct: 95 STPKLSSLSSSGIKISCTVHGPRPLPRSAPFSPHVVLAAHVKYAPFATRKRRGYQRYPGE 154
Query: 116 KDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSD---------------------- 153
+D + L AL G +I + +PK+ VDV +LE G D
Sbjct: 155 RDLAMHLETALRGVVIGDRWPKSGVDVVITILE-GEEDQWWEDDNQAESGPAGQWGMMSV 213
Query: 154 LPVVISCASVALADAGIMMYDLVASVSVSCLGKN----------------LLIDPVLEEE 197
L I+ AS A++DAGI D+V S V+ + ++ L++DPV E
Sbjct: 214 LSGCITVASAAISDAGIDCVDMV-SGGVAAVVRDRELQVSAKSGTLPQPTLVLDPVPSEH 272
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPH-------FNEAMQLCLDASAKLGKIMRSC 250
S + ++A +PSR E+T L G++ T + ++ + ++A+ +++ +
Sbjct: 273 SEILAACVVAYLPSRDEITDLWAKGDFDTGYSEDGHSSYDSLSENAIEAAKGSYRVLDAA 332
Query: 251 LKEAAS 256
LKE+ +
Sbjct: 333 LKESVA 338
>gi|320591764|gb|EFX04203.1| 3 exoribonuclease family protein [Grosmannia clavigera kw1407]
Length = 317
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 113/249 (45%), Gaps = 46/249 (18%)
Query: 52 FRTGAVNSASGSAYAEFGN--------TKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTT 103
+TG SASGSAY E + K+ +V GPR ++M +S L+ +V Y
Sbjct: 68 LQTGVTPSASGSAYLELSSGAVAGTSGLKLSCTVHGPRALPRSMPFSPHLILSTHVKYAP 127
Query: 104 FATPVRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSD------- 153
FAT R + + +D + L +L GAI+ E +PK+ VD+ V+E+
Sbjct: 128 FATKERRGYLRDTSERDLAVHLETSLRGAILGERWPKSGVDIVVSVIEADQDRSAPEQDP 187
Query: 154 ----------LPVVISCASVALADAGIMMYDLVASVSVSCLGKN------------LLID 191
L ++ AS ALADAGI D VA + + + L+ D
Sbjct: 188 AEELWGMMNVLSGCVTVASAALADAGIDCVDTVAGGVAALVEETAAEQASPTAEHVLVAD 247
Query: 192 PVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQL-----CLDASAKLGKI 246
PV E + +A +P+R EVT L + G+ P + A+QL L A+ + ++
Sbjct: 248 PVPAEHGRILAACCVAYLPNRDEVTNLWLKGDMP-PSVDGALQLQMIDQALHAARQADQV 306
Query: 247 MRSCLKEAA 255
+ + L+E A
Sbjct: 307 IVAALQETA 315
>gi|356565547|ref|XP_003551001.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex exonuclease RRP46
homolog [Glycine max]
Length = 244
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 74/162 (45%), Gaps = 8/162 (4%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
RPD R +Q RP + ++ A GSA G TKV+ +V+GP+ K
Sbjct: 5 RPDGRTPNQLRPLAYSCSILHRAHGSASWAQGETKVLAAVYGPKAGTKKNENPE------ 58
Query: 98 NVSYTTFATPVRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPV 156
S P GQ G K++ +L + LE I +P TT V V+ G+ LP
Sbjct: 59 KASIEVIWKPKTGQIGKMEKEYEMILKRTLESICIRTIYPNTTTSVIVQVVHDDGALLPC 118
Query: 157 VISCASVALADAGIMMYDLVASVSVSCLGKN-LLIDPVLEEE 197
I+ A AL DAGI + L ++ S +++DP +EE
Sbjct: 119 AINAACAALVDAGIPLKHLAVAICCSVTDSGCIILDPTKDEE 160
>gi|402224488|gb|EJU04550.1| ribosomal protein S5 domain 2-like protein [Dacryopinax sp. DJM-731
SS1]
Length = 257
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 110/232 (47%), Gaps = 24/232 (10%)
Query: 27 PIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVN-----SASGSAYAEFGNTKVIVSVFGPR 81
P+ +G+ LR D R RP R+ + SA GSA G T+V V+GPR
Sbjct: 6 PLNAGN----LRSDGR-----RPLELRSFSAELTTHPSADGSASVSHGLTQVTACVYGPR 56
Query: 82 ESK-KAMMYSNIGRLNCNVSYTTFATPVRGQGS--DHK--DFSSMLHKALEGAIILETFP 136
E+K +A + +N V +A VR Q + D + +F++ + E I +P
Sbjct: 57 EAKNRAQTMHDRALVNIEVEVAPWAGEVRRQRTKGDRRTAEFAASVKATFEPVIQTTLYP 116
Query: 137 KTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEE 196
++ +D+ VL+ G L I+ ++AL DAGI M D V+S+S ++D E
Sbjct: 117 RSEIDIHIHVLQLDGGLLQAGINATTLALVDAGIPMLDYVSSLSAGLYHTTAMLDLTNLE 176
Query: 197 ESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMR 248
ES S+ +A +P +VT +++ F E +L ++ GK++R
Sbjct: 177 ES-DLPSVTVAVLPRSGKVTLVSMETRLHVDRFEEMFKLAMEG----GKVLR 223
>gi|255720833|ref|XP_002545351.1| exosome complex exonuclease RRP41 [Candida tropicalis MYA-3404]
gi|240135840|gb|EER35393.1| exosome complex exonuclease RRP41 [Candida tropicalis MYA-3404]
Length = 240
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 82/150 (54%), Gaps = 6/150 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAV-NSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGR 94
LR D R +++ R R NS+ GS+Y E GNTKV+ +V GP E + ++ +S
Sbjct: 9 LRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVVCTVQGPIEPQLRSQQHSEHAN 68
Query: 95 LNCNVSYTTFATPVRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ N++ FAT R + + ++ + ++L K +I++ +P+T + + VL
Sbjct: 69 IEINLTIANFATFERKKRNKNEKRLIELKNILEKTFMESIMINLYPRTNIIINIQVLSQD 128
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVS 180
G L + + ++AL D+GI MYD V+S++
Sbjct: 129 GGLLSAITNSITLALIDSGISMYDYVSSIN 158
>gi|388851424|emb|CCF54826.1| probable exosome complex exonuclease rrp41 [Ustilago hordei]
Length = 269
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 99/224 (44%), Gaps = 8/224 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAV--NSASGSAYAEFGNTKVIVSVFGPRESKK-AMMYSNIG 93
R D R + R + G SA GSA G T V +VFGPRE++ A M +
Sbjct: 12 FRVDGRKQFELRSIAIQLGGSPDTSADGSAQITQGLTTVSATVFGPREARTGANMIHDRA 71
Query: 94 RLNCNVSY----TTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+N V +T +F+S + E I +P++ +D+F V +
Sbjct: 72 SVNVEVCLAPWGSTERRRRNRGDRRLLEFASSIKSTFEPVIHTHLYPRSQIDIFVQVHQQ 131
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACM 209
G LP I+ A++AL DAGI M D VASVS + ++D + E + +A +
Sbjct: 132 DGGVLPAAINAATLALLDAGIAMQDFVASVSCGIHSTSAMLD-LSNAEEMDLPHVTVAVL 190
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
P +VT ++ F + L ++A+A L M +++
Sbjct: 191 PRTKQVTLASLETRLHVERFEQIFTLAIEAAAVLHNEMELAVRD 234
>gi|190346269|gb|EDK38314.2| hypothetical protein PGUG_02412 [Meyerozyma guilliermondii ATCC
6260]
Length = 242
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 91/169 (53%), Gaps = 7/169 (4%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAV-NSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNI 92
+ LR D R +++ R + NS++GS+Y E GNTKVI V GP E + ++ + +
Sbjct: 10 EGLRVDGRRWNELRRFECKINTHPNSSTGSSYVEQGNTKVICMVEGPSEPETRSQVDVSR 69
Query: 93 GRLNCNVSYTTFATPVRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ N++ +F+T R + ++ + + + + E ++I + +P+T + V VL
Sbjct: 70 ATIEVNIAVASFSTIERKKRLKNEKRIIELKATMERTFEQSVICKLYPRTVIKVNLHVLA 129
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLID-PVLEE 196
G L +I+ ++AL DAGI MYD VA+V+ + L+D LEE
Sbjct: 130 QDGGMLATMINATTLALIDAGIAMYDYVAAVAAGLHNETPLLDLNTLEE 178
>gi|295667607|ref|XP_002794353.1| 3' exoribonuclease family protein [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226286459|gb|EEH42025.1| 3' exoribonuclease family protein [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 350
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 82/317 (25%), Positives = 131/317 (41%), Gaps = 76/317 (23%)
Query: 20 PTRKTRPPIFSGS--------DVDWLRP-DSRGFHQCRPAFFRTGAVNSASGSAYAEFGN 70
P+ TRPP+F+ S + RP SR + R F +TG + SASGSAY EF
Sbjct: 10 PSGDTRPPVFASSLLASDNRRSIALERPIRSRKPDELRKIFLKTGLIPSASGSAYLEFQT 69
Query: 71 T------------------KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG-- 110
+ K+ +V GP+ ++ +S L+ +V + FAT R
Sbjct: 70 STILPRSKLKTLIPPSSSLKLTCTVHGPKPLPRSAPFSPNLLLSTHVKFAPFATRRRRSY 129
Query: 111 -QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES---------------GGSD- 153
+ + +D L AL+G II E +PK+ +D+ +LE GG D
Sbjct: 130 IRDVNERDLGVHLETALKGVIIGERWPKSGLDITVTILEGEDDRWWGDALSSSPFGGIDG 189
Query: 154 ------LPVVISCASVALADAGIMMYDLVAS----------VSVS---------CLGKNL 188
L I+ AS A+ DA I DL+ + VS + L
Sbjct: 190 WGLMNVLAGCITVASAAIVDARIDCVDLITGGVAAFVENPHIEVSGEPEETNEKGRDRRL 249
Query: 189 LIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNE-----AMQLCLDASAKL 243
++DP E + ++ MPSR E+T+L + G+ S H + + +D +
Sbjct: 250 VLDPDPSEHRGIAAACVVGYMPSRDEITELWLKGDTSDFHGGSQKGSLSHEALIDGAVNA 309
Query: 244 GKIMRSCLKEAASDEQE 260
+ ++ L EA+ + E
Sbjct: 310 ARGTQAVLMEASRESAE 326
>gi|327305819|ref|XP_003237601.1| 3' exoribonuclease [Trichophyton rubrum CBS 118892]
gi|326460599|gb|EGD86052.1| 3' exoribonuclease [Trichophyton rubrum CBS 118892]
Length = 335
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 81/304 (26%), Positives = 131/304 (43%), Gaps = 68/304 (22%)
Query: 20 PTRKTRPPIF----SGSD--VDWLRPD-SRGFHQCRPAFFRTGAVNSASGSAYAEF---- 68
P TR P+F +G D + RP +R + R + +TG + SASGSAY E
Sbjct: 10 PAGATRAPVFVSCAAGKDKSAAFERPTRTRDARELRKIYLKTGVIPSASGSAYFELHPSN 69
Query: 69 -----------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG---QGSD 114
+ K+I SV GP+ ++ +S L+ +V + FA R + ++
Sbjct: 70 SSPGGSLIPPSSSLKLICSVNGPKPLSRSTPFSPNLLLSAHVKFAPFANRRRRAHVRDTN 129
Query: 115 HKDFSSMLHKALEGAIILETFPKTTVDVFALVLES---------------GGSD------ 153
+D L AL GAII + +PK+ +D+ ++LE GSD
Sbjct: 130 ERDLGVHLENALRGAIIGDRWPKSGLDITIMILEGEDDRWWGDMSTAETLTGSDGWGMMN 189
Query: 154 -LPVVISCASVALADAGIMMYDLVAS-----VSVSCLG-------KNLLIDPVLEEESYQ 200
L ++ AS A+ADA I DLVA V G K +++DP E
Sbjct: 190 VLAHCVTVASAAIADARIDCLDLVAGGVAAVVDTCSTGEGATTSTKTVVLDPDPSEHLNI 249
Query: 201 DGSLMIACMPSRYEVTQLTVTGE---------WSTPHFNEAMQLCLDASAKLGKIMRSCL 251
S ++ MPS E+T+L + G+ + +P+ + M + A+ ++ +
Sbjct: 250 SSSCVVGYMPSLDEITELWLKGDMPGASSNGTYDSPNHDALMDGAIAAAKACHSVLIEAV 309
Query: 252 KEAA 255
KE+A
Sbjct: 310 KESA 313
>gi|302829841|ref|XP_002946487.1| hypothetical protein VOLCADRAFT_108889 [Volvox carteri f.
nagariensis]
gi|300268233|gb|EFJ52414.1| hypothetical protein VOLCADRAFT_108889 [Volvox carteri f.
nagariensis]
Length = 245
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 105/224 (46%), Gaps = 5/224 (2%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIG 93
+ LR D R + R + ++SA GSA E GNTKV+ +VFGP +K+A + +
Sbjct: 7 EGLRLDGRRPRELRRINCQLDVLSSADGSAIFEMGNTKVLAAVFGPHAVTKRADLREDAA 66
Query: 94 RLNCNVSYTTFATPVRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ C S F+T R + + S ++ LE AI+ E P++ +DV+ VL++
Sbjct: 67 IVVCEYSMAAFSTGERRRRGKGDRRSTELSMVIRNTLEQAILRELMPRSQIDVYVQVLQA 126
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACM 209
G I+ A +ALA AG+ + DLVAS + L L+D E+S L +A
Sbjct: 127 DGGTRCAAINAAVLALAAAGVPLRDLVASCAAGYLDGTPLLDLNFTEDSGGGPDLAVALA 186
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
P + + + F + L D + +MR+ L E
Sbjct: 187 PREGLLVLVQMDNRLPVDTFQAVLDLARDGCRTISGVMRAALLE 230
>gi|356532014|ref|XP_003534569.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Glycine max]
Length = 243
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 73/162 (45%), Gaps = 8/162 (4%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
RPD R +Q RP ++ A GSA G TKV+ +V+GP+ K
Sbjct: 5 RPDGRTPNQLRPLACSCSILHRAHGSASWAQGETKVLAAVYGPKAGTKKNENPE------ 58
Query: 98 NVSYTTFATPVRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPV 156
S P GQ G K++ +L + LE I +P TT V V+ G+ LP
Sbjct: 59 KASIEVIWKPKTGQIGKLEKEYEMILKRTLESICIRTIYPNTTTSVIVQVVHDDGALLPC 118
Query: 157 VISCASVALADAGIMMYDLVASVSVSCLGKN-LLIDPVLEEE 197
I+ A AL DAGI + L ++ S +++DP EEE
Sbjct: 119 AINAACTALVDAGIPLKHLAVAICCSVTDSGCIILDPTKEEE 160
>gi|405119953|gb|AFR94724.1| exosome component Rrp41 [Cryptococcus neoformans var. grubii H99]
Length = 262
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 107/222 (48%), Gaps = 6/222 (2%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSN----I 92
LR D+R ++ R F+ S+ GS+ A G T V VSVFGPRE + + S+ +
Sbjct: 14 LRQDARRPYELRSTSFQLSTHPSSDGSSTATQGLTTVAVSVFGPREPRNRGLASHDRAVV 73
Query: 93 GRLNCNVSYTTFATPVRGQGSDH-KDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
V + A R +G ++ + + + E I+ +P++ + + VL + G
Sbjct: 74 SVEVGVVPWAAGAGARRTRGDKRLQEIGAAIRQTFEPVIMTHLYPRSEIAIHVQVLSADG 133
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS 211
LP I+ ++AL DAGI + D V+S+S+ L+D EES SL+IA +PS
Sbjct: 134 GILPTSINATTLALIDAGISLLDYVSSISIGLHLLQPLLDLSQPEESDLP-SLVIASLPS 192
Query: 212 RYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
++T + F E + L ++A L + M +K+
Sbjct: 193 SGKITLAQMETRLHVDRFEEMLTLGVEACKVLKEEMDGVVKD 234
>gi|356568370|ref|XP_003552384.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Glycine max]
Length = 243
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 98/240 (40%), Gaps = 25/240 (10%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
RPD R +Q RP ++ + GSA G TKV+ +V+GP+ K
Sbjct: 5 RPDGRTPNQLRPLVCSCSILHRSHGSASWAQGETKVLAAVYGPKAGTKKSENPE------ 58
Query: 98 NVSYTTFATPVRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPV 156
S P GQ G K++ +L + LE I +P TT V V+ G+ LP
Sbjct: 59 KASIEVIWKPKTGQIGKVEKEYEMILKRTLESICIRTIYPNTTTSVIVQVVHDDGALLPC 118
Query: 157 VISCASVALADAGIMMYDLVASVSVSCLGKN-LLIDPVLEEESYQ--------------- 200
I+ A AL DAGI + L ++ S +++DP +EE
Sbjct: 119 AINAACAALVDAGIPLKHLAVAICCSVTDSGCIILDPTKDEEEKMKAFINLVFPNTIVSV 178
Query: 201 --DGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDE 258
+GSL P + + G S + ++ ASA+L + +R ++ ++ E
Sbjct: 179 LPEGSLQAGSEPMAHGIMTSITQGAMSVDDYLHCLERGRAASARLSEFVRKNIELKSTSE 238
>gi|347837487|emb|CCD52059.1| similar to 3' exoribonuclease family protein [Botryotinia
fuckeliana]
Length = 317
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 127/307 (41%), Gaps = 76/307 (24%)
Query: 20 PTRKTRPPIFSGSDVDWLRPDSRGFHQ----------CRPAFFRTGAVNSASGSAYAEF- 68
P T PP+F + +L DS+ + R F +TG SASGSAY E
Sbjct: 10 PPGGTNPPVF----LKYLTKDSKNRPERPSRNRQPNVLRKIFLKTGVTPSASGSAYLELE 65
Query: 69 -----------------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG- 110
K+ +V GPR K+ +S L +V Y FA R
Sbjct: 66 PSQPSNQSAPGLASLSTSGLKLACTVHGPRPLPKSAAFSPHMILQTHVKYAPFAARRRRG 125
Query: 111 --QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE-----------------SGG 151
+ + +D L AL G II + +PK+ V++ +LE +GG
Sbjct: 126 YVRDTSERDLGVHLETALRGVIIGDRWPKSGVEINITILEGEEDHWWGDDKSFGSLTAGG 185
Query: 152 ----SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKN-----------LLIDPVLEE 196
S L I+ AS A+ADAGI D+V S V+ L ++ L++DPV E
Sbjct: 186 WGMMSVLSGCITVASAAIADAGIDCVDVV-SGGVAALVRSPATPEQDGSTELVLDPVPSE 244
Query: 197 ESYQDGSLMIACMPSRYEVTQLTVTGEWS--------TPHFNEAMQLCLDASAKLGKIMR 248
+ ++A +P+R E+T L V G+ S P + + + + A+ +++
Sbjct: 245 HKEILAACIVAYLPARDEITDLWVKGDISHSTESNTDDPSYEKLTENAVQAALGAHRVLI 304
Query: 249 SCLKEAA 255
LKE A
Sbjct: 305 GALKETA 311
>gi|76155868|gb|AAX27138.2| SJCHGC06185 protein [Schistosoma japonicum]
Length = 251
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 91/189 (48%), Gaps = 8/189 (4%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLN 96
R D R ++ R + G+ NS G + GNTKVI SV GP + K + +
Sbjct: 3 RVDGRRPNELRRVHCQFGSGNS-DGIVFLHQGNTKVIASVVGPHAPRTKGDGNPDGATII 61
Query: 97 CNVSYTTFAT------PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
C + FA+ V DFS+ + + + E +P + +D+F V++S
Sbjct: 62 CQFTKPPFASTSGERRKVASNDRSANDFSTAIEEIFSCVVRTEKYPMSQIDIFLEVIQSD 121
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
GS+ ++ ++AL DAGI M+ LV++ +V G + D EE+ + L + C+P
Sbjct: 122 GSEFACAVNATTLALTDAGIEMHYLVSAATVGLWGSRVFADLCRFEENPRLSQLTVVCLP 181
Query: 211 SRYEVTQLT 219
+++++ +
Sbjct: 182 DIHQLSEFS 190
>gi|328850748|gb|EGF99909.1| hypothetical protein MELLADRAFT_68249 [Melampsora larici-populina
98AG31]
Length = 271
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 107/220 (48%), Gaps = 17/220 (7%)
Query: 37 LRPDSRGFHQCRPAFFRT--GAVNSASGSAYAEFGNTKVIVSVFGPRE-------SKKAM 87
LR D+R ++ R F+ + NS GS+ G TKV SV GP+E + K+
Sbjct: 12 LRQDNRRPYELRQLDFKILKSSPNSLDGSSIVSHGLTKVTSSVSGPKEITSSSSSNHKSN 71
Query: 88 MYS---NIGRLNCNVSYTTFATPVRGQGS--DHK--DFSSMLHKALEGAIILETFPKTTV 140
+ S N+G + V+ T F+ R + S D + D S + E I+L+ +P++ +
Sbjct: 72 LKSHTNNVGSIQVYVNMTNFSQSDRKKLSKVDKRLMDLSFSIQNTFESVIMLKLYPRSLI 131
Query: 141 DVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGK-NLLIDPVLEEESY 199
++F VL+ G L I+ S++L +GI + D + ++S+ L NL + V E
Sbjct: 132 EIFIEVLQEDGGLLQAAINATSLSLIASGISIQDYILAISIGSLSNPNLPLLDVTNLEQL 191
Query: 200 QDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDA 239
SL IA +P +++ + V + F + ++ L+A
Sbjct: 192 DLPSLTIASLPRSSKISLIQVESRLNIDEFEKLCRIGLEA 231
>gi|374724589|gb|EHR76669.1| exosome complex component RRP41 [uncultured marine group II
euryarchaeote]
Length = 242
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 110/222 (49%), Gaps = 4/222 (1%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
D LR D R + RP G + +A GSA G + +V+GP E+ + + +
Sbjct: 13 DGLRLDGRKIDEMRPMTIEAGVLPAADGSAMVTHGLNVAVAAVYGPMEAHPRKIQRQDRA 72
Query: 94 RLNCNVSYTTFATPVR---GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
++ + F+T R G ++ S + +ALE +++E +P++ + V +L +
Sbjct: 73 VIDVRYNMAPFSTSDRIRPGYNRRSREISKVTAEALESVVLVERYPRSKIRVEIEILAAE 132
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
++ A+VALADAGI M DL+ V+ + +++D E++Y L + +P
Sbjct: 133 AGTRCAGLTAAAVALADAGIPMRDLIVGVASGKVEGTVVLDLDKAEDNYGQADLPVGILP 192
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
+ E+ L + G+ S +N AM+ A+A++ +IM LK
Sbjct: 193 NTGEIAFLQMDGDLSPDEYNLAMEYNFKAAAEIHEIMVDALK 234
>gi|410079801|ref|XP_003957481.1| hypothetical protein KAFR_0E01920 [Kazachstania africana CBS 2517]
gi|372464067|emb|CCF58346.1| hypothetical protein KAFR_0E01920 [Kazachstania africana CBS 2517]
Length = 246
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 11/154 (7%)
Query: 37 LRPDSRGFHQCRP--AFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIG 93
LR D R +++ R A T A + + GS+Y E GN K+ V GPRE S+++ + +
Sbjct: 12 LRLDGRRWNELRKFDASINTHA-HLSDGSSYLEQGNNKIFTLVKGPREPSQRSQLDQSKA 70
Query: 94 RLNCNVSYTTFATPVRGQGSDHKD------FSSMLHKALEGAIILETFPKTTVDVFALVL 147
LN V+ T F+ R + S HK+ + L + E ++L+ +P+T +D+ VL
Sbjct: 71 TLNVTVNITRFSKFERSKAS-HKNERRTLEIQTSLVRTFEKNLMLQNYPRTVIDIEIHVL 129
Query: 148 ESGGSDLPVVISCASVALADAGIMMYDLVASVSV 181
+ G + +I+ ++A DAGI MYD ++ VSV
Sbjct: 130 QQDGGLVGSLINGITLACIDAGIAMYDYISGVSV 163
>gi|146417428|ref|XP_001484683.1| hypothetical protein PGUG_02412 [Meyerozyma guilliermondii ATCC
6260]
Length = 242
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 90/169 (53%), Gaps = 7/169 (4%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAV-NSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNI 92
+ LR D R +++ R + NS +GS+Y E GNTKVI V GP E + ++ + +
Sbjct: 10 EGLRVDGRRWNELRRFECKINTHPNSLTGSSYVEQGNTKVICMVEGPLEPETRSQVDVSR 69
Query: 93 GRLNCNVSYTTFATPVRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ N++ +F+T R + ++ + + + + E ++I + +P+T + V VL
Sbjct: 70 ATIEVNIAVASFSTIERKKRLKNEKRIIELKATMERTFEQSVICKLYPRTVIKVNLHVLA 129
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLID-PVLEE 196
G L +I+ ++AL DAGI MYD VA+V+ + L+D LEE
Sbjct: 130 QDGGMLATMINATTLALIDAGIAMYDYVAAVAAGLHNETPLLDLNTLEE 178
>gi|156049529|ref|XP_001590731.1| hypothetical protein SS1G_08471 [Sclerotinia sclerotiorum 1980]
gi|154692870|gb|EDN92608.1| hypothetical protein SS1G_08471 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 317
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 126/307 (41%), Gaps = 76/307 (24%)
Query: 20 PTRKTRPPIFSGSDVDWLRPDSRGFHQ----------CRPAFFRTGAVNSASGSAYAEF- 68
P T PIFS +L DS+ + R F +TG SASGSAY E
Sbjct: 10 PPGGTHAPIFS----KYLAKDSKNRPERPSRNRQPNVLRKIFLKTGVTPSASGSAYLELE 65
Query: 69 -----------------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG- 110
K+ +V GPR K+ +S L +V Y FA+ R
Sbjct: 66 PSQPSNQSAPGLASLSTSGLKLTCTVHGPRPLSKSAAFSPHMILQTHVKYAPFASRRRRG 125
Query: 111 --QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE-----------------SGG 151
+ + +D L AL G II + +PK+ V++ +LE +GG
Sbjct: 126 YIRDTSERDLGVHLETALRGVIIGDRWPKSGVEINITILEGEEDHWWGDDKSFGSSTAGG 185
Query: 152 ----SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKN-----------LLIDPVLEE 196
S L I+ AS A+ADAGI D+V S V+ L ++ L++DPV E
Sbjct: 186 WGMMSVLSGCITVASAAIADAGIDCVDVV-SGGVAALVRSPANSEQEDSTSLVLDPVPSE 244
Query: 197 ESYQDGSLMIACMPSRYEVTQLTVTGEWS--------TPHFNEAMQLCLDASAKLGKIMR 248
+ ++A +P+R E+T L V G+ P + E + + A+ +++
Sbjct: 245 HKEILAACIVAYLPARDEITDLWVKGDIGHSTESNNDDPSYEELTENAVQAALGAHRVLI 304
Query: 249 SCLKEAA 255
LKE A
Sbjct: 305 GALKETA 311
>gi|213407144|ref|XP_002174343.1| exosome complex exonuclease RRP41 [Schizosaccharomyces japonicus
yFS275]
gi|212002390|gb|EEB08050.1| exosome complex exonuclease RRP41 [Schizosaccharomyces japonicus
yFS275]
Length = 243
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 107/225 (47%), Gaps = 8/225 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRL 95
LR D R +++ R R G +A GS++ + GNT+V+ +V GP E K +
Sbjct: 13 LRQDGRRWNEMREFDCRIGVEKTAHGSSFIQHGNTRVLCNVNGPSEPYIKGKSKQEKAFI 72
Query: 96 NCNVSYTTFATPVRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
N +++ F+ R + SD + + + + E AI +E +PK+ + + VLE G
Sbjct: 73 NVELNFAPFSLIDRKKRHRSDKRIQEQCVAIQRTFEQAIQVELYPKSQISISLNVLEDDG 132
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLM-IACMP 210
+ I+ A++AL DAGI M D V + +L+D EES D S M + +
Sbjct: 133 GAIATCINAATLALIDAGIAMVDYVCCATAGIYETQVLLDLNTNEES--DISWMTVGVLG 190
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAA 255
++ +VT L + S F A+ + + M+ ++++A
Sbjct: 191 TKGKVTYLKQETKLSLDLFEPALTTAIAGCDHIALQMQKVVRQSA 235
>gi|357507241|ref|XP_003623909.1| Exosome complex exonuclease RRP46 [Medicago truncatula]
gi|355498924|gb|AES80127.1| Exosome complex exonuclease RRP46 [Medicago truncatula]
Length = 243
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 73/162 (45%), Gaps = 8/162 (4%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
RPD R +Q RP ++ A GSA G TKV+ +V+GP+ K
Sbjct: 5 RPDGRSPNQLRPLACSHSVLHRAHGSATWAQGETKVLAAVYGPKAGTKKNENPE------ 58
Query: 98 NVSYTTFATPVRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPV 156
S P G G +++ +L K LE I +P TT V V+ G+ LP
Sbjct: 59 KASIEVIWKPNTGHVGQADREYEMILKKTLESICIRTIYPNTTTSVIVQVVHDDGALLPC 118
Query: 157 VISCASVALADAGIMMYDLVASVSVSCLGKN-LLIDPVLEEE 197
I+ A AL DAGI + L ++ S N +++DP +EE
Sbjct: 119 AINAACAALVDAGIPLRHLAVAICCSVTDNNSIILDPSKKEE 160
>gi|449511723|ref|XP_004164036.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Cucumis
sativus]
Length = 243
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 79/172 (45%), Gaps = 10/172 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R +Q RP +N A GSA G+TKV+ +V+GP+ K
Sbjct: 5 RDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPE------ 58
Query: 98 NVSYTTFATPVRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPV 156
S P GQ G ++ +L + L+ IL T P TT + V+ G+ LP
Sbjct: 59 KASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPC 118
Query: 157 VISCASVALADAGIMMYDLVASVSVSCLGKN--LLIDPVLEEESYQDGSLMI 206
I+ + AL DAGI + L ++S CL +N +++DP EE S+ +
Sbjct: 119 AINASCAALVDAGIPLKHLAVAISC-CLSENGYVILDPTKIEEEKMKASVHL 169
>gi|449465139|ref|XP_004150286.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Cucumis
sativus]
Length = 243
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 79/172 (45%), Gaps = 10/172 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R +Q RP +N A GSA G+TKV+ +V+GP+ K
Sbjct: 5 RDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPE------ 58
Query: 98 NVSYTTFATPVRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPV 156
S P GQ G ++ +L + L+ IL T P TT + V+ G+ LP
Sbjct: 59 KASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPC 118
Query: 157 VISCASVALADAGIMMYDLVASVSVSCLGKN--LLIDPVLEEESYQDGSLMI 206
I+ + AL DAGI + L ++S CL +N +++DP EE S+ +
Sbjct: 119 AINASCAALVDAGIPLKHLAVAISC-CLSENGYVILDPTKIEEEKMKASVHL 169
>gi|156845783|ref|XP_001645781.1| hypothetical protein Kpol_1010p39 [Vanderwaltozyma polyspora DSM
70294]
gi|156116449|gb|EDO17923.1| hypothetical protein Kpol_1010p39 [Vanderwaltozyma polyspora DSM
70294]
Length = 246
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 117/230 (50%), Gaps = 14/230 (6%)
Query: 37 LRPDSRGFHQCR--PAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIG 93
LR D R +++ R T A +++ GS+Y E GN K++ V GP+E ++ + +
Sbjct: 12 LRLDGRRWNELRRFECSINTHA-HASDGSSYLEQGNNKIVTLVKGPQEPILRSQLDATKA 70
Query: 94 RLNCNVSYTTFATPVRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVL 147
LN V+ T F+ R + S HK + + L + E ++L +P+T +D+ VL
Sbjct: 71 SLNITVNITKFSKMERSKSS-HKNERRVLEMQTALVRTFEKNVMLHLYPRTLIDIEIHVL 129
Query: 148 ESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLID-PVLEEESYQDGSLMI 206
+ G L +I+ ++AL D+GI MYD V+++S+ L+D LEE + ++ +
Sbjct: 130 QQDGGILGSLINSITLALIDSGIAMYDYVSAISIGLYDTTPLLDVNTLEENAM--STVTL 187
Query: 207 ACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAAS 256
+ +++ L+V + + + + + ++ ++M + L++ A+
Sbjct: 188 GVIGKSEKLSLLSVEDKIPLDRLESVLAIGIAGAHRVRELMDNELRKHAA 237
>gi|366992712|ref|XP_003676121.1| hypothetical protein NCAS_0D01780 [Naumovozyma castellii CBS 4309]
gi|342301987|emb|CCC69759.1| hypothetical protein NCAS_0D01780 [Naumovozyma castellii CBS 4309]
Length = 246
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 85/163 (52%), Gaps = 9/163 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSAS-GSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGR 94
LR D R +++ R + AS GS+Y E GN KVI V GP+E + ++ M +
Sbjct: 12 LRLDGRRWNELRRFECSINTHSHASDGSSYLEQGNNKVITLVKGPKEPTLRSQMDTEKAI 71
Query: 95 LNCNVSYTTFATPVRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
L +V+ T F+ R + S HK + + L + E ++L +P+T +D+ VL+
Sbjct: 72 LKISVNITQFSKFERSKSS-HKNERRVLEMQTALIRTFEKNVMLNIYPRTLIDIEVHVLQ 130
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLID 191
G + +I+ ++AL DAGI MYD ++ VS+ L+D
Sbjct: 131 QDGGIMGSLINGITLALIDAGIAMYDYISGVSIGLYDTTPLLD 173
>gi|344231786|gb|EGV63668.1| ribosomal protein S5 domain 2-like protein [Candida tenuis ATCC
10573]
gi|344231787|gb|EGV63669.1| hypothetical protein CANTEDRAFT_114736 [Candida tenuis ATCC 10573]
Length = 242
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 7/169 (4%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAV-NSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNI 92
+ LR D R +++ R + NS+ GS+Y E GN+K+I V GP E K ++ M N
Sbjct: 10 EGLRVDGRRWNELRRFECKINTHPNSSDGSSYVEQGNSKIICMVQGPMEPKLRSQMDVNK 69
Query: 93 GRLNCNVSYTTFATPVRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ ++S F+T R + S ++ + + + E +II +P+T + + VL
Sbjct: 70 ANIEVSISIAHFSTFHRKKRSKNEKRIVELKTAIENTFENSIISHLYPRTFIQINIQVLA 129
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLID-PVLEE 196
G L + + A++AL DAGI MYD V+ VS + L+D LEE
Sbjct: 130 QDGGLLAGMANAATLALIDAGIAMYDYVSCVSAGLYDQYPLLDLNTLEE 178
>gi|443900274|dbj|GAC77600.1| membrane coat complex Retromer, subunit VPS5/SNX1 [Pseudozyma
antarctica T-34]
Length = 290
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 96/197 (48%), Gaps = 24/197 (12%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
RPD R + Q R F +T V SASGS+Y E G+ K+ SVFGPR+ K YS LN
Sbjct: 41 RPDGRAYTQLRSIFLQTNLVPSASGSSYVEIGDLKLACSVFGPRQV-KGRQYSGKAELNV 99
Query: 98 NVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG---SDL 154
V + F++ R Q KAL ++ L+ PK ++D+ +VL++ G S +
Sbjct: 100 EVKFAPFSSRRRRQPG----------KALLPSLRLDLLPKASLDIHIMVLQTDGLEESCI 149
Query: 155 PVVISCASVALADAGIMMY----DLVASVSVSCLG-KNLLIDPVLEEESYQDG-----SL 204
AS ALA AGI MY VA V G + +L+DP + G +
Sbjct: 150 AAACMAASTALASAGIEMYGPVVGTVALVPAQGSGEQRVLLDPSSADIGLVTGMKTSTRV 209
Query: 205 MIACMPSRYEVTQLTVT 221
++ MP+ VT L V+
Sbjct: 210 LLCGMPALASVTCLNVS 226
>gi|429850755|gb|ELA25998.1| 3 exoribonuclease family protein [Colletotrichum gloeosporioides
Nara gc5]
Length = 268
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 99/208 (47%), Gaps = 35/208 (16%)
Query: 51 FFRTGAVNSASGSAYAEF-------------GNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
+TG +ASGSAY E K+I +V GPR ++ +S L+
Sbjct: 22 VLKTGVAPTASGSAYMEIEPPQLQANPIANANGMKLICTVHGPRSLPRSTPFSPYLVLST 81
Query: 98 NVSYTTFATPVRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE------ 148
+V Y FAT R + S +D S L AL GAII + +PK+ VDV ++E
Sbjct: 82 HVKYAPFATRQRRGYLRDSSERDLSVHLDTALRGAIIADRWPKSGVDVIVTIIEGDQERE 141
Query: 149 ---SGGSDLPVVISCAS--VALADAGIMMYDLVASVSVSCLGK--------NLLIDPVLE 195
S G++ V++ S + +ADAGI D+V + +G+ ++++DPV
Sbjct: 142 LSYSQGNEQWDVMNVLSGCITVADAGIDCVDMVTGGIAAVVGEAAGDLSATSIVMDPVSF 201
Query: 196 EESYQDGSLMIACMPSRYEVTQLTVTGE 223
+ + +A +PSR E+T L + G+
Sbjct: 202 DHERILAACCVAYLPSRAEMTNLWLKGQ 229
>gi|302891493|ref|XP_003044628.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256725553|gb|EEU38915.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 283
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 112/236 (47%), Gaps = 34/236 (14%)
Query: 20 PTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNT-------- 71
P T PP++ +D + +R + R + RTG SASGSAY E +
Sbjct: 10 PGGVTIPPVYE-ADESSVTSRTRPPNGVRSQYLRTGVTASASGSAYLEIESQDASGSKGM 68
Query: 72 KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG---QGSDHKDFSSMLHKALEG 128
K+ +V GPR ++ +S L+ +V Y FAT R + + +D SS L AL G
Sbjct: 69 KLTCTVHGPRSLPRSAPFSPHMVLSTHVKYAPFATRQRRGYLRDASERDLSSHLEAALRG 128
Query: 129 AIILETFPKTTVDVFALVLESG---------GSD----LPVVISCASVALADAGIMMYDL 175
A+I + +PK+ VDV ++E GS+ + V+ C +VA A D
Sbjct: 129 ALIADRWPKSGVDVIVTIVEGDQARQVAVEQGSEEWDMMNVLSGCITVAAAALADAGIDC 188
Query: 176 VASVS--VSCL--GKN-----LLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTG 222
V +VS V+ L G++ L++DPV E + +A +P+R E+T L + G
Sbjct: 189 VDTVSGGVAALVPGQDDKEPLLVLDPVPSEHKDILAACCVAYLPARDEITNLWLKG 244
>gi|255711166|ref|XP_002551866.1| KLTH0B01738p [Lachancea thermotolerans]
gi|238933244|emb|CAR21428.1| KLTH0B01738p [Lachancea thermotolerans CBS 6340]
Length = 245
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 87/166 (52%), Gaps = 11/166 (6%)
Query: 35 DWLRPDSRGFHQCR--PAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
+ LR D R +++ R T A N++ GS+Y E GN KVI V GP+E K ++ M
Sbjct: 10 EGLRVDGRRWNELRRLECSINTHA-NASDGSSYLEQGNNKVITLVTGPQEPKLRSQMNVT 68
Query: 92 IGRLNCNVSYTTFATPVRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFAL 145
++ ++ T F+ R + S HK + + L + E ++L +P+T +++
Sbjct: 69 KATISVALNITRFSKIERSKSS-HKNERRVLEMQTALVRTFEKNVMLHLYPRTQIEIQIH 127
Query: 146 VLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLID 191
VL+ G + +I+ ++AL DAGI MYD ++ VS+ L+D
Sbjct: 128 VLQQDGGLMSSLINGITLALIDAGIAMYDYISGVSIGLYDTTPLLD 173
>gi|451856157|gb|EMD69448.1| hypothetical protein COCSADRAFT_32167 [Cochliobolus sativus ND90Pr]
Length = 252
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 78/150 (52%), Gaps = 9/150 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGP-----RESKKAMMYSN 91
LR D R +++ R + +A GS+Y E GNTKV+VSV GP + ++
Sbjct: 13 LRLDGRRWNELRHIHAQISTQAAADGSSYLEMGNTKVLVSVSGPAAEGKQTGQRGTTSDK 72
Query: 92 IGRLNCNVSYTTFATPVRGQGSDHKDFSSMLH---KALEGAIILETFPKTTVDVFALVLE 148
+ +++ +++ F+ R + K S M H A EG + L +P++T+ + ++
Sbjct: 73 LAKIDVEINFAGFSGVDRRKRKTDKKTSEMEHCLRSAFEGVVSLHLYPRSTITINVHIVS 132
Query: 149 SGGSDLPVVISCASVALADAGIMMYD-LVA 177
GS L ++ A++AL DAGI M D LVA
Sbjct: 133 QDGSLLAACLNAATLALVDAGIPMTDYLVA 162
>gi|281200843|gb|EFA75059.1| hypothetical protein PPL_11677 [Polysphondylium pallidum PN500]
Length = 233
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 103/219 (47%), Gaps = 9/219 (4%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
+R D R +Q R +N A GSA N+ V+ +++GP E I +
Sbjct: 1 MVRIDKRNNNQIRSIESELALLNKADGSAKFSLDNSSVLAAIYGPVEVNPR--KEKISKA 58
Query: 96 NCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDL 154
V +T P G Q K+ S++ A+E I+ P+T + + V + GS +
Sbjct: 59 TVEVVFT----PDSGNQNYQTKEQESLIRNAIESVIMTMLHPRTLISIIIQVYSTDGSIV 114
Query: 155 PVVISCASVALADAGIMMYDLVASVSVSCLGK-NLLIDPVLEEESYQDGSLMIACMPSRY 213
I+ A +AL DAGI + L+AS+S+S + +DP ++EE+ + + I S+
Sbjct: 115 SCSINAACLALLDAGIELNSLIASISLSFNSDGQIYLDPTMKEEN-ESKATAIYAFNSQL 173
Query: 214 EVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
++ + +G + EA+QL + ++ +R+ +K
Sbjct: 174 KLMMIKSSGIITEQQNQEALQLARSSCERILAYIRTAVK 212
>gi|150951278|ref|XP_001387575.2| predicted protein [Scheffersomyces stipitis CBS 6054]
gi|149388461|gb|EAZ63552.2| 3'->5' exoribonuclease [Scheffersomyces stipitis CBS 6054]
Length = 241
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 103/220 (46%), Gaps = 9/220 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAV-NSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGR 94
LR D R +++ R R NS+ GS+Y E GNTKVI V GP E + ++ SN
Sbjct: 9 LRIDGRRWNEIRNFECRINTHPNSSDGSSYIEQGNTKVICVVQGPMEPALRSQANSNEAT 68
Query: 95 LNCNVSYTTFATPVRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
L N+S F+T R + S + + L + + +++ +P+T + + VL
Sbjct: 69 LEVNLSVANFSTTERKKRSKSEKRMVQLKTTLERTFQQSVMCNLYPRTLIRIDLHVLSQD 128
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLID-PVLEEESYQDGSLMIACM 209
G L + ++AL DAG+ MYD VA+++ + L+D LEE +L I +
Sbjct: 129 GGMLAACTNAMTLALIDAGVSMYDYVAAMTAGLHDQTPLLDMNGLEENDM--STLTIGVI 186
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRS 249
+++ L + + + + + S K+ +M S
Sbjct: 187 GKSEKLSLLMLEDKIPLDRLESVLAIAIAGSHKIRDLMDS 226
>gi|358332153|dbj|GAA50858.1| exosome complex component RRP41 [Clonorchis sinensis]
Length = 477
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 12/181 (6%)
Query: 38 RPDSRGFHQCRPAF--FRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGR 94
R D R ++ R F F+TG ++ G GNTKV+ SV GPR + K M +
Sbjct: 231 RIDGRRTNELRRVFCQFQTG---NSDGIVLLHQGNTKVMASVVGPRPCRFKGDMKPDEAT 287
Query: 95 LNCNVSYTTFAT------PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
L C + F++ V + DF++ + + + E +P + +D+F VL+
Sbjct: 288 LVCKYNKPPFSSTSGERRKVSNRDRSTSDFAATIEEIFSCVVRKEKYPMSQIDIFLEVLQ 347
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
S GS+ ++ A++AL DAGI M L + +V G +L D EE+ + L + C
Sbjct: 348 SDGSEFACAVNAATLALTDAGIEMRSLACAATVGMWGPHLFADLCRFEENPRIPQLTMVC 407
Query: 209 M 209
+
Sbjct: 408 L 408
>gi|326471461|gb|EGD95470.1| 3' exoribonuclease [Trichophyton tonsurans CBS 112818]
gi|326481764|gb|EGE05774.1| 3' exoribonuclease [Trichophyton equinum CBS 127.97]
Length = 334
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 81/304 (26%), Positives = 131/304 (43%), Gaps = 68/304 (22%)
Query: 20 PTRKTRPPIF----SGSD--VDWLRPD-SRGFHQCRPAFFRTGAVNSASGSAYAEF---- 68
P TR P+F G D + RP +R + R + +TG + SASGSAY E
Sbjct: 10 PAAATRAPVFVSCAEGKDKPAAFKRPTRTRDARELRKIYLKTGVIPSASGSAYFELHPSN 69
Query: 69 -----------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG---QGSD 114
+ K+I SV GP+ ++ +S L+ +V + FA R + +
Sbjct: 70 SSHGGSLIPPSSSLKLICSVNGPKPLSRSTPFSPNLLLSAHVKFAPFAGRRRRAHVRDMN 129
Query: 115 HKDFSSMLHKALEGAIILETFPKTTVDVFALVLES---------------GGSD------ 153
+D L AL GAII + +PK+ +D+ ++LE GSD
Sbjct: 130 ERDLGVHLENALRGAIIGDRWPKSGLDITIMILEGEDDRWWGDMSTAETLTGSDGWGMMN 189
Query: 154 -LPVVISCASVALADAGIMMYDL----VASVSVSCLG--------KNLLIDPVLEEESYQ 200
L ++ AS A+ADA I DL VA+V +C K +++DP E
Sbjct: 190 VLAHCVTVASAAIADARIDCLDLVAGGVAAVVDTCSSGEGATSSTKMVVLDPDPSEHLNI 249
Query: 201 DGSLMIACMPSRYEVTQLTVTGE---------WSTPHFNEAMQLCLDASAKLGKIMRSCL 251
S ++ MPS E+T+L + G+ + +P+ + M + A+ ++ +
Sbjct: 250 SSSCVVGYMPSLDEITELWLKGDMPGASSDGTYDSPNHDALMDGAIAAAKASHSVLIEAV 309
Query: 252 KEAA 255
KE+A
Sbjct: 310 KESA 313
>gi|254585869|ref|XP_002498502.1| ZYRO0G11814p [Zygosaccharomyces rouxii]
gi|238941396|emb|CAR29569.1| ZYRO0G11814p [Zygosaccharomyces rouxii]
Length = 245
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 114/233 (48%), Gaps = 18/233 (7%)
Query: 35 DWLRPDSRGFHQCR--PAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSN 91
+ LR D R +++ R T + ++A GS+Y E GN K+I V GP+E S ++ M
Sbjct: 10 EGLRVDGRRWNELRRFDCSINTHS-HAADGSSYLEQGNNKIITLVKGPKEPSLRSQMDPT 68
Query: 92 IGRLNCNVSYTTFATPVRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFAL 145
L +V+ T F+ R + S HK + + L + ++L +P+T +D+
Sbjct: 69 KALLKVSVNITKFSKTERSKTS-HKNERRVLEIQTALTRTFNKNVMLHIYPRTLIDIEIH 127
Query: 146 VLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDG--- 202
VL+ G + +I+ ++AL DAGI M+D ++ VSV P+LE S ++
Sbjct: 128 VLQQDGGLVGTLINGITLALIDAGIAMFDYISGVSVGLYDTT----PLLEVNSLEENVMS 183
Query: 203 SLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAA 255
S+ + + +++ L V + + + + + ++ ++M S L++ A
Sbjct: 184 SVTLGVVGKTEKLSLLLVEDKIPLDRLESVLAIGIAGAHRVRELMDSELRKRA 236
>gi|402079729|gb|EJT74994.1| hypothetical protein GGTG_08832 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 291
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 84/280 (30%), Positives = 124/280 (44%), Gaps = 50/280 (17%)
Query: 20 PTRKTRPPIF------SGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEF----- 68
P T PP+F +G V +R +R + R F +TG ASGSAY E
Sbjct: 10 PVGTTYPPVFINEPADNGKKVQRIR--TRPPNTIRKMFLKTGITPPASGSAYLEIEHPSG 67
Query: 69 ---GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG---QGSDHKDFSSML 122
K+ +V GPR ++ +S L+ +V Y FAT R + + +D S L
Sbjct: 68 SGMSGLKLACTVHGPRALPRSAPFSPHIVLSTHVKYAPFATKQRRGYIRDASERDLSVHL 127
Query: 123 HKALEGAIILETFPKTTVDVFALVLESGGSD-------------LPVVISCASV---ALA 166
AL GAII + +PK+ VDV V+E G D + V+ C +V ALA
Sbjct: 128 ETALRGAIIADRWPKSGVDVIVSVIE-GDQDRSQPDGDGEAWGTMSVLSGCITVAAAALA 186
Query: 167 DAGIMMYDLVASVSVSCL----------GKNLLIDPVLEEESYQDGSLMIACMPSRYEVT 216
DAGI D+VA V+ L +++DPV E + +A +P+R EVT
Sbjct: 187 DAGIDCVDVVAG-GVAALVVDAGAPEGAEGTIVLDPVPAEHERVVAACCVAYLPNRDEVT 245
Query: 217 QLTVTGEWSTPH---FNEAMQLCLDASAKLGKIMRSCLKE 253
L G +T + + + + AS +++ LKE
Sbjct: 246 TLWFKGNVATSDTALYLDVVNSAVKASRSANRVLADSLKE 285
>gi|12848640|dbj|BAB28033.1| unnamed protein product [Mus musculus]
Length = 283
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 88/167 (52%), Gaps = 8/167 (4%)
Query: 93 GRLNCNVSYTTFATPVR----GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
GRL C+ F+ R G G + ++ L +ALE A+ L +P+ ++V AL+LE
Sbjct: 104 GRLLCDFRRAPFSGRRRRAPQGGGGEDRELGLALQEALEPAVRLGRYPRAQLEVSALLLE 163
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCL---GKNLLIDPVLEEESYQDGSLM 205
GG L ++ A++ALADAG+ MYDLV +S L+DP EE + L
Sbjct: 164 DGGCALAAALTAAALALADAGVEMYDLVVGCGLSLTPGPSPTWLLDPTRLEEEHSAAGLT 223
Query: 206 IACMPSRYEVTQLTVTGEWS-TPHFNEAMQLCLDASAKLGKIMRSCL 251
+A MP +V L +GE T + +A++L L+ +L +++ CL
Sbjct: 224 VALMPVLNQVAGLLGSGEGGQTESWTDAVRLGLEGCQRLYPVLQQCL 270
>gi|452003219|gb|EMD95676.1| hypothetical protein COCHEDRAFT_1019334 [Cochliobolus
heterostrophus C5]
Length = 254
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 80/152 (52%), Gaps = 11/152 (7%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPR-ESKKA------MMY 89
LR D R +++ R + +A GS+Y E GNTKV+VSV GP ESK+ +
Sbjct: 13 LRLDGRRWNELRHIHAQISTQAAADGSSYLEMGNTKVLVSVTGPAAESKQGGGQRGGISN 72
Query: 90 SNIGRLNCNVSYTTFATPVRGQGSDHKDFSSMLH---KALEGAIILETFPKTTVDVFALV 146
+ +++ +++ F+ R + K + M H A EG + L +P++T+ + V
Sbjct: 73 DKLAKIDVEINFAGFSGVDRRKRKTDKKTNEMEHCLRSAFEGVLSLHLYPRSTITIHVHV 132
Query: 147 LESGGSDLPVVISCASVALADAGIMMYD-LVA 177
+ GS L ++ A++AL DAGI M D LVA
Sbjct: 133 VSQDGSLLAACLNAATLALVDAGIPMTDYLVA 164
>gi|209882995|ref|XP_002142931.1| 3' exoribonuclease family protein [Cryptosporidium muris RN66]
gi|209558537|gb|EEA08582.1| 3' exoribonuclease family protein, putative [Cryptosporidium muris
RN66]
Length = 250
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 108/231 (46%), Gaps = 14/231 (6%)
Query: 35 DWLRPDSRGFHQCR--PAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI 92
+ R D R F++ R G N + S Y E G TK+I S+ GP + S I
Sbjct: 14 EGFRIDGRRFNEIRRISCKISNGTSNLSDSSVYYEQGQTKLITSICGPIPLLNSSSQSGI 73
Query: 93 GRLNCNVSYTTFATPVRGQGSDHKDF----SSMLHKALEGAIILETFPKTTVDVFALVLE 148
+L+CN + F TP R + + F S ++ + E AI E + K+ + + VLE
Sbjct: 74 -QLHCNFRMSPFCTPDRRKRGKNDRFCTENSLIITRTFESAI-SEIYVKSQIIININVLE 131
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ G I+ S+ALA+AGI M DLV S ++ G+ L D V E + A
Sbjct: 132 ADGGVRSAAINATSLALANAGIGMKDLVISSTIGLYGRIPLYDIVQAEFDVLKTIMSFAI 191
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASA----KLGKIMRSCLKEAA 255
+ + +T+ E +T + + L L+ SA + KI+R+ L++ A
Sbjct: 192 YSTDENIAPITM--ELNTKVDEDILNLLLEHSAAACKHISKILRNILRQHA 240
>gi|167382557|ref|XP_001736162.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165901601|gb|EDR27679.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 227
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 99/210 (47%), Gaps = 7/210 (3%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R ++ R + G ++ A GS + N+KVI SV + +++ +
Sbjct: 7 RGDGREANEIRATTIKIGVISGAKGSCLIQKENSKVISSV-QIKTQDESIDF----EFTV 61
Query: 98 NVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVV 157
V++ F + +L ++L I E+ + + V+E GS +
Sbjct: 62 KVTFAQFENNSLFNNRKEIELQEILTQSLTSRINQESNKGKIICLQVFVMEQDGSVEDSI 121
Query: 158 ISCASVALADAGIMMYDLVASVSVSCL--GKNLLIDPVLEEESYQDGSLMIACMPSRYEV 215
I+ +S+AL DA I M ++ + +V L +++DP EE ++GS++IAC+PS +
Sbjct: 122 INSSSLALFDAEIQMDSIIIATTVVKLPIYNQVIVDPTAFEEEKKEGSVLIACIPSNSSI 181
Query: 216 TQLTVTGEWSTPHFNEAMQLCLDASAKLGK 245
TQ+ ++G + + + LD+ KL K
Sbjct: 182 TQIYMSGVLDPQDISSCLSIALDSCWKLNK 211
>gi|365984727|ref|XP_003669196.1| hypothetical protein NDAI_0C02930 [Naumovozyma dairenensis CBS 421]
gi|343767964|emb|CCD23953.1| hypothetical protein NDAI_0C02930 [Naumovozyma dairenensis CBS 421]
Length = 246
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 88/165 (53%), Gaps = 13/165 (7%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNS----ASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSN 91
LR D R +++ R F + ++N+ + GS+Y E GN K+I V GP+E + ++ + +N
Sbjct: 12 LRLDGRRWNELRR--FES-SINTHPHASDGSSYLEQGNNKIITLVKGPKEPTSRSQVDTN 68
Query: 92 IGRLNCNVSYTTFATPVRGQGSDHKD-----FSSMLHKALEGAIILETFPKTTVDVFALV 146
L +V+ T F+ R + S + + L + E ++L +P+T +D+ V
Sbjct: 69 KALLRISVNITQFSKFERSKSSHRNERRVLEMQTALVRTFEKNVMLNLYPRTLIDIEIHV 128
Query: 147 LESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLID 191
L+ G + +++ ++AL DAGI MYD ++ +SV L+D
Sbjct: 129 LQQDGGIMGSLLNGITLALIDAGIAMYDYISGISVGLYDTTPLLD 173
>gi|396460216|ref|XP_003834720.1| similar to exosome complex exonuclease RRP41 [Leptosphaeria
maculans JN3]
gi|312211270|emb|CBX91355.1| similar to exosome complex exonuclease RRP41 [Leptosphaeria
maculans JN3]
Length = 280
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 78/148 (52%), Gaps = 7/148 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK---KAMMYSNIG 93
LR D R +++ R + +A GS+Y E GNTK++VSV GP E + + + G
Sbjct: 13 LRLDGRRWNELRRIHAQISTQAAADGSSYLEMGNTKILVSVTGPAEGRQSGQRGGQNGQG 72
Query: 94 RLNCNVSYTTFATPVRGQGSDHKDFSSMLH---KALEGAIILETFPKTTVDVFALVLESG 150
++ +++ F+ R + K S M H A EG ++L +P +T+ + ++
Sbjct: 73 KVEVEINFAGFSGVDRRKRKSDKRTSEMEHCLRSAFEGVLLLHLYPHSTITLNIHIISQD 132
Query: 151 GSDLPVVISCASVALADAGIMMYD-LVA 177
GS L I+ A++AL DAGI M D LVA
Sbjct: 133 GSLLAACINAATLALIDAGIPMSDYLVA 160
>gi|164660188|ref|XP_001731217.1| hypothetical protein MGL_1400 [Malassezia globosa CBS 7966]
gi|159105117|gb|EDP44003.1| hypothetical protein MGL_1400 [Malassezia globosa CBS 7966]
Length = 253
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 95/189 (50%), Gaps = 15/189 (7%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RPD R + RP + +TG + SASGS E G+TK++ SV GPR+ + Y+ +N
Sbjct: 20 VRPDGRKAEEPRPLYLQTGIIPSASGSTLLESGHTKIVCSVHGPRQV-RGRHYAGKAEVN 78
Query: 97 CNVSYTTFATPVRGQGSDHKD--FSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDL 154
F+ R D + ++++ +AL AI L+ PK+++DV VL+S S L
Sbjct: 79 VQFEMAPFSEKERRSSRDTEAPVPAALIQQALLPAIRLDLLPKSSIDVHITVLDSDTSML 138
Query: 155 ---PVVISCASVALADAGIMMYDLVASVSVSCLG---------KNLLIDPVLEEESYQDG 202
+ + AS ALA+AG+ M LV + + + + L+DP E +
Sbjct: 139 GCAAMGATAASAALAEAGVQMLGLVTGATATAISTLPSTNKAQQLWLVDPTHREYADSHS 198
Query: 203 SLMIACMPS 211
LMI +P+
Sbjct: 199 HLMICGLPA 207
>gi|256072702|ref|XP_002572673.1| ribonuclease pH related [Schistosoma mansoni]
gi|360044228|emb|CCD81775.1| ribonuclease pH related [Schistosoma mansoni]
Length = 258
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 98/209 (46%), Gaps = 16/209 (7%)
Query: 28 IFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KA 86
++G VD RP+ C+ F +G + G + GNTKVI SV GP + K
Sbjct: 5 FYNGRRVDGRRPNEIRRVDCQ---FGSGY---SDGIVFLHQGNTKVIASVVGPHAPRVKG 58
Query: 87 MMYSNIGRLNCNVSYTTFAT------PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTV 140
+ + C + FA+ + + DF++ + + I E +P + +
Sbjct: 59 DGTPDGATITCQFTKPPFASTSGERRKLSSKDRSANDFATAIEEIFSCVIRTEKYPMSQI 118
Query: 141 DVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQ 200
D+F V++S GS+ ++ ++AL DAGI M LV++ +V G ++ D EE+ +
Sbjct: 119 DIFLEVIQSDGSEFACAVNATTLALTDAGIEMDCLVSAATVGLWGSHVFADLCRFEENPR 178
Query: 201 DGSLMIACMPSRYEVTQLTV---TGEWST 226
L + C+P+ + ++ + G+W +
Sbjct: 179 ISQLTVVCLPNVHLLSGVNTEEQIGQWKS 207
>gi|221060204|ref|XP_002260747.1| exosome complex exonuclease rrp41 homolog [Plasmodium knowlesi
strain H]
gi|193810821|emb|CAQ42719.1| exosome complex exonuclease rrp41 homolog,putative [Plasmodium
knowlesi strain H]
Length = 246
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 102/240 (42%), Gaps = 18/240 (7%)
Query: 27 PIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVN---SASGSAYAEFGNTKVIVSVFGPRES 83
P+ + + R D R +CR G N A G A+ E GNTK++ + GP E
Sbjct: 2 PLVEYVNEEGYRLDGRKEDECRLIKINVGNENIFTDADGFAFYEIGNTKLLSYIQGPTEL 61
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPVR--------GQGSDHKDFSSMLHKALEGAIILETF 135
KK+ C++ F +P + S + S+ + E I+L+ +
Sbjct: 62 KKS-------EEKCSIKCEVFLSPFNVYEKKKKKTKDSVTNEISAYIRNICENIILLDLY 114
Query: 136 PKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLE 195
+ +++F ++E G I+ +AL DAGI + +++ SV L +L+D
Sbjct: 115 KNSEINIFLYIIERDGGVKHAAINTCILALIDAGIAIKYFISACSVLYLQNRILVDGNQL 174
Query: 196 EESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAA 255
E + L + + +++ L E F ++ C+D LG +M+ +KE A
Sbjct: 175 EINSGAPELTMVIELNTHKIILLEFDAEVPIDIFEAMVRTCMDCCVNLGNVMKLTVKENA 234
>gi|68065138|ref|XP_674553.1| exosome complex exonuclease [Plasmodium berghei strain ANKA]
gi|56493201|emb|CAH99095.1| exosome complex exonuclease rrp41, putative [Plasmodium berghei]
Length = 246
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 101/229 (44%), Gaps = 18/229 (7%)
Query: 38 RPDSRGFHQCRPAFFRTG---AVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
R D R ++ R G N A G A+ E GNTK++ + GP E KK
Sbjct: 13 RLDGRKCNEYRLIKINMGNQNIFNDADGFAFYEIGNTKILSYIQGPTELKKT-------D 65
Query: 95 LNCNVSYTTFATPV------RGQGSDH--KDFSSMLHKALEGAIILETFPKTTVDVFALV 146
C++ F +P + + D+ + S+ + E I+L+ + + +++F +
Sbjct: 66 EKCSIKCDVFLSPFNVYDKRKKKTKDNITNEISAYIRNICENIILLDLYKNSEINIFLYI 125
Query: 147 LESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMI 206
+E G I+ +AL DAGI + +++ SV L +++D E + L +
Sbjct: 126 IERDGGIKHAAINTCILALIDAGIAIKYFISACSVLYLQNKIIVDGNQLEINSGSPELTM 185
Query: 207 ACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAA 255
+ +++ L E F +Q C+D+ +G++M+ +KE A
Sbjct: 186 VIELNTHKIILLEFDAEVPIDIFESMVQTCIDSCVNIGRVMQLTVKENA 234
>gi|390595539|gb|EIN04944.1| hypothetical protein PUNSTDRAFT_116225 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 261
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 106/233 (45%), Gaps = 13/233 (5%)
Query: 31 GSDVDWL-----RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK- 84
GS V+ L R D R ++ R A G A G T+V VSVFGPRE++
Sbjct: 2 GSRVEILNDGGYRSDGRRQYELRDINIDMTHQGPADGFATVSHGLTEVSVSVFGPREARL 61
Query: 85 KAMMYSNIGRLNCNVSYTTFATPVRGQGSDHK----DFSSMLHKALEGAIILETFPKTTV 140
++ + +N V+ F+T R + + +F + + E I +P++ +
Sbjct: 62 RSQTIHDRANINVEVNIAPFSTGDRRRRNRGDKRILEFGATIKSTFEPVIQTSLYPRSQI 121
Query: 141 DVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPV-LEEESY 199
D+ LVL+ G L I+ ++AL DAGI + D++ +V+ + L+D LEE
Sbjct: 122 DIHVLVLQQDGGVLQACINATTLALIDAGIPLLDILCAVTGGVHSTSPLLDLTNLEENDV 181
Query: 200 QDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
+ +A MP + T T+ F E ++ +A+ L M++ +K
Sbjct: 182 P--HITVAIMPRTGKATLATMETRLHVDRFEEVFKIACEAAHVLHTEMKAAVK 232
>gi|169762716|ref|XP_001727258.1| 3' exoribonuclease family protein [Aspergillus oryzae RIB40]
gi|83770286|dbj|BAE60419.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391866699|gb|EIT75967.1| 3' exoribonuclease family protein [Aspergillus oryzae 3.042]
Length = 324
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 121/302 (40%), Gaps = 61/302 (20%)
Query: 20 PTRKTRPPIF-----SGSDVDWLRPD-SRGFHQCRPAFFRTGAVNSASGSAYAEF----- 68
P TRP +F S SD+ RP R ++ R F +TG + SASGSAY E+
Sbjct: 10 PPSGTRPAVFASSLNSASDIATGRPQRQRQPNELRKIFLKTGLIPSASGSAYLEYEPSAS 69
Query: 69 ---------------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG--- 110
K+ +V GP+ ++ +S L ++ Y FA R
Sbjct: 70 LAAARSSPKSLIPPSSALKLACTVHGPKPLPRSATFSPNLVLTTHIKYAPFAARKRKGHI 129
Query: 111 QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES----------GGSDLPV---- 156
+ + +D L AL G I+ E +PK+ +D+ +LE+ D P
Sbjct: 130 RDASERDLGVHLETALRGVIVAERWPKSGLDITITILEAEDDRWWGDAPDSHDAPWGMMN 189
Query: 157 ----VISCASVALADAGIMMYDLVASVSVSCLGK---------NLLIDPVLEEESYQDGS 203
I+ AS A++DA I DL+A + + L++D E +
Sbjct: 190 VLAGCITAASAAISDARIDCLDLIAGGVAAIVADESEDGEAKPKLMLDTDPAEHKAILSA 249
Query: 204 LMIACMPSRYEVTQLTVTGEWSTPHF-----NEAMQLCLDASAKLGKIMRSCLKEAASDE 258
++A MPSR E+T++ + G+ S + LD + + S L EA +
Sbjct: 250 CVVAYMPSRDEITEIWLKGDSSKALLGPDDKRSGHEALLDGAVDAARGAHSVLAEAVRES 309
Query: 259 QE 260
E
Sbjct: 310 AE 311
>gi|116195962|ref|XP_001223793.1| hypothetical protein CHGG_04579 [Chaetomium globosum CBS 148.51]
gi|88180492|gb|EAQ87960.1| hypothetical protein CHGG_04579 [Chaetomium globosum CBS 148.51]
Length = 286
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 117/275 (42%), Gaps = 42/275 (15%)
Query: 20 PTRKTRPPIFSGSDVDWLRP---DSRGFHQCRPAFFRTGAVNSASGSAYAEFGNT----- 71
P T PP+F L+ SR + R + +TG SASGSAY E +
Sbjct: 10 PAGATIPPVFDDVSTQKLKSPKTRSRPPNTTRKMYLKTGVTPSASGSAYLEIETSATPGV 69
Query: 72 ---KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG---QGSDHKDFSSMLHKA 125
K+ SV GPR ++ +S L+ +V Y FAT R + +D L A
Sbjct: 70 SGLKLSCSVHGPRSLPRSAPFSPHIVLSTHVKYAPFATKQRRGYLRDPSERDLGIHLEAA 129
Query: 126 LEGAIILETFPKTTVDVFALVLESGGSD--------------LPVVISCASVALADAGIM 171
L GAII + +PK+ VD+ ++E G D + V+ C +VA A
Sbjct: 130 LRGAIIADRWPKSGVDIIISIVE-GDQDRETSQLQGDEVWDMMNVLGGCITVAAAALADA 188
Query: 172 MYDLVASVS--VSCLGKN--------LLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVT 221
D V +V+ V+ L ++ +++DP+ E + IA +P+R EVT L
Sbjct: 189 GIDCVDTVAGGVAALVQDAGEDSIPTVVVDPIPSEHEKILAACCIAYLPTRDEVTNLWFR 248
Query: 222 GEWSTPHFNEAMQLC---LDASAKLGKIMRSCLKE 253
G+ + L + AS +++ CL E
Sbjct: 249 GDLPASDIDLYTSLVEKGIQASKNANRVLVGCLTE 283
>gi|156102006|ref|XP_001616696.1| exosome complex exonuclease rrp41 [Plasmodium vivax Sal-1]
gi|148805570|gb|EDL46969.1| exosome complex exonuclease rrp41, putative [Plasmodium vivax]
Length = 246
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 102/240 (42%), Gaps = 18/240 (7%)
Query: 27 PIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVN---SASGSAYAEFGNTKVIVSVFGPRES 83
P+ + + R D R +CR G N A G A+ E GNTK++ + GP E
Sbjct: 2 PLVEYVNEEGYRLDGRKEDECRLIKINVGNENIFTDADGFAFYEIGNTKLLSYIQGPTEL 61
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPVR--------GQGSDHKDFSSMLHKALEGAIILETF 135
KK+ C++ F +P + S + S+ + E I+L+ +
Sbjct: 62 KKS-------EEKCSIKCEVFLSPFNVYEKKKKKTKDSVTNEISAYIRNICENIILLDLY 114
Query: 136 PKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLE 195
+ +++F ++E G I+ +AL DAGI + +++ SV L +L+D
Sbjct: 115 KNSEINIFLYIIERDGGVKHAAINTCILALIDAGIAIKYFISACSVLFLQNRILVDGNQL 174
Query: 196 EESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAA 255
E + L + + +++ L E F ++ C+D LG +M+ +KE A
Sbjct: 175 EINSGAPELTMVIELNTHKIVLLEFDAEVPIDIFEAMVRTCMDCCINLGNVMKLTVKENA 234
>gi|406695095|gb|EKC98410.1| 3'-to-5' phosphorolytic exoribonuclease, Ski6p [Trichosporon asahii
var. asahii CBS 8904]
Length = 254
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 101/226 (44%), Gaps = 14/226 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D+R + R G A GS+ G T V +VFGPRE K+ +
Sbjct: 12 LRHDNRRPFELRSLSCALGVHPQADGSSQVSQGLTTVQAAVFGPREPKQ---KAGAAHDK 68
Query: 97 CNVSYTTFATP-VRGQGS-------DHK--DFSSMLHKALEGAIILETFPKTTVDVFALV 146
NV P +GQG D + + + + + E I + +P++ + V V
Sbjct: 69 ANVVVEVGVVPWAQGQGQGRGRTRGDKRLLEIGAAIRQTFEPVIQVGLYPRSEIAVQVQV 128
Query: 147 LESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMI 206
L++ G LP I+ ++AL DAGI M+D V SVSV L+D EE+ SL++
Sbjct: 129 LQADGGILPTAINAVTLALIDAGIAMHDYVTSVSVGLHLTQALLDLSAPEENDLP-SLVV 187
Query: 207 ACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
A +P+ ++T + F E ++L +A + M +K
Sbjct: 188 ASLPNSGKITLAQMETRLHVDRFEEMLRLGTEACKVIKDDMEQVVK 233
>gi|45185722|ref|NP_983438.1| ACR035Wp [Ashbya gossypii ATCC 10895]
gi|44981477|gb|AAS51262.1| ACR035Wp [Ashbya gossypii ATCC 10895]
gi|374106644|gb|AEY95553.1| FACR035Wp [Ashbya gossypii FDAG1]
Length = 246
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 16/176 (9%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNS----ASGSAYAEFGNTKVIVSVFGPRE-SKKAMMY 89
+ LR D R +++ R F ++N+ A GS+Y E GN K+I V GP E + ++ +
Sbjct: 10 EGLRLDGRRWNELRR--FEC-SINTHPTAADGSSYLEQGNNKLITLVTGPHEPALRSQVN 66
Query: 90 SNIGRLNCNVSYTTFATPVRGQGSDHKDFSSMLH------KALEGAIILETFPKTTVDVF 143
+ L V+ T FA R + + HK+ +L + E ++L+ +P+T +DV
Sbjct: 67 PSKATLTVTVNMTKFAAAERSK-TGHKNERRILEMQTALVRTFEKNVMLQLYPRTAIDVQ 125
Query: 144 ALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLID-PVLEEES 198
VL++ G L +I+ ++AL DAGI MY+ ++ +SV L+D LEE++
Sbjct: 126 VHVLQNDGGVLGSMINGITLALIDAGIAMYEYISGISVGLYDTTPLLDLNRLEEQA 181
>gi|226291910|gb|EEH47338.1| 3' exoribonuclease family protein [Paracoccidioides brasiliensis
Pb18]
Length = 350
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 82/319 (25%), Positives = 129/319 (40%), Gaps = 80/319 (25%)
Query: 20 PTRKTRPPIFSGS--------DVDWLRP-DSRGFHQCRPAFFRTGAVNSASGSAYAEFGN 70
P+ TRPP+F+ S + RP SR + R F +TG + SASGSAY EF
Sbjct: 10 PSGDTRPPVFASSLLASNNRRSIALERPIRSRKPDELRKIFLKTGLIPSASGSAYLEFQT 69
Query: 71 T------------------KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG-- 110
+ K+ +V GP+ ++ +S L+ +V + FAT R
Sbjct: 70 STNLPRSKLKTLIRPSSSLKITCAVHGPKPLPRSAPFSPNLLLSTHVKFAPFATRRRRGY 129
Query: 111 -QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES---------------GGSD- 153
+ + +D L AL+G II E +PK+ +D+ +LE GG D
Sbjct: 130 IRDVNERDLGVHLETALKGVIIGERWPKSGLDITVTILEGEDDRWWGDDLSSSPLGGIDG 189
Query: 154 ------LPVVISCASVALADAGIMMYDLVAS----------VSVS---------CLGKNL 188
L I+ AS A+ DA I DL+ + VS + L
Sbjct: 190 WGLMNVLAGCITVASAAIVDARIDCVDLITGGVAAFVENPHIEVSGEPEETNEKGRDRRL 249
Query: 189 LIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQ-------LCLDASA 241
++DP E + ++ M SR E+T+L + G+ T F Q +D +
Sbjct: 250 VLDPDPSEHQAIAAACVVGYMSSRDEITELWLKGD--TSDFQGGSQKGSLGHEALIDGAV 307
Query: 242 KLGKIMRSCLKEAASDEQE 260
+ ++ L EA+ + E
Sbjct: 308 NAARGTQAVLMEASRESAE 326
>gi|407920170|gb|EKG13387.1| Exoribonuclease phosphorolytic domain 1 [Macrophomina phaseolina
MS6]
Length = 324
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/319 (24%), Positives = 128/319 (40%), Gaps = 80/319 (25%)
Query: 1 MAAKPSTTTTAKATYSPI-----------DPTRKTRPPIFSGSDVDWLRPDSRGFHQCRP 49
M + T A TY+P+ PTR +R +R + R
Sbjct: 1 MTDRRRTNAPAGGTYAPVFASFLPNYEGPAPTRPSR---------------TRSPDELRK 45
Query: 50 AFFRTGAVNSASGSAYAEF------------------GNTKVIVSVFGPRESKKAMMYSN 91
F +TG SASGSAY E G+ K+ V GP+ ++ ++
Sbjct: 46 MFLKTGLTPSASGSAYLELTPGDSTPRARRTTLAHATGHLKLSCVVHGPKPLPRSSPFTP 105
Query: 92 IGRLNCNVSYTTFATPVRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
L + + FAT R + + +D L AL G +I E +PK+ VD+ VLE
Sbjct: 106 YLNLTTTLKFAPFATRTRRGYVRDAAERDLGQHLEAALRGIVIGERWPKSGVDIIITVLE 165
Query: 149 S-------------GGSD-------------LPVVISCASVALADAGIMMYDLVASVSVS 182
GG+ L I+ AS A+ DAGI D+VA V+
Sbjct: 166 GEEDGWVGDELGLQGGAGKGSVGMGWGLMNVLAGCITVASAAIVDAGIDCVDMVAG-GVA 224
Query: 183 CL-----GKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCL 237
L G+ L++DP E + ++ +P R E+T+L + G+ + + ++ +
Sbjct: 225 ALVKEGEGEQLVLDPSPPEHKDLVAACVVGYLPGRDEITELWMKGD-AGDRAEDLVERSV 283
Query: 238 DASAKLGKIMRSCLKEAAS 256
A+ ++ +KE+A+
Sbjct: 284 QAALASRLVLEEAVKESAA 302
>gi|449295966|gb|EMC91987.1| hypothetical protein BAUCODRAFT_60118, partial [Baudoinia
compniacensis UAMH 10762]
Length = 298
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 119/294 (40%), Gaps = 58/294 (19%)
Query: 20 PTRKTRPPIFSGSD-VDWLRPD-SRGFHQCRPAFFRTGAVNSASGSAYAEF--------- 68
P T PP F+ V RP +R + R + RTG V SASGSAY E
Sbjct: 10 PPGGTAPPAFATPKTVKLERPKRTRKPDEHRKIYLRTGIVPSASGSAYYEIPPQSDQKQS 69
Query: 69 -------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG---QGSDHKDF 118
+ K+ +V GPR + +S L +V + FAT R + + +D
Sbjct: 70 GLSLPQTSSLKITCTVHGPRPLPRNAAFSPNLLLTTHVKFAPFATRHRRGYVRDASERDL 129
Query: 119 SSMLHKALEGAIILETFPKTTVDVFALVLESGGSD-------------------LPVVIS 159
+ L AL G II E +PK+ V+V VLE L I+
Sbjct: 130 AVHLETALRGVIIGERWPKSGVEVVITVLEGEEDGWWGDAGGGGGGGGWGLMGVLAGCIT 189
Query: 160 CASVALADAGIMMYDL-------------VASVSVSCLGKNLLIDPVLEEESYQDGSLMI 206
AS AL DAGI DL + L++DP E + + ++
Sbjct: 190 VASAALVDAGIDCVDLVSGGVAVVVGDGGGSGGKPKGGEGALVLDPSPAEHAEMRAACVV 249
Query: 207 ACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDEQE 260
A + SR E+T+L + G+ E+ +L +D + K + R+ L EA + E
Sbjct: 250 AYLHSRDEITELWMRGDAGA----ESERL-IDEAVKAASLARTVLVEAVKEAVE 298
>gi|189208598|ref|XP_001940632.1| exosome complex exonuclease RRP41 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187976725|gb|EDU43351.1| exosome complex exonuclease RRP41 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 250
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 77/148 (52%), Gaps = 7/148 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI---G 93
LR D R +++ R + +A GS+Y E GNTK++VSV GP E +++
Sbjct: 13 LRLDGRRWNELRRIHAQISTQAAADGSSYLEQGNTKILVSVTGPHEGRQSGQRGGADKQA 72
Query: 94 RLNCNVSYTTFATPVRGQGSDHKDFSSMLH---KALEGAIILETFPKTTVDVFALVLESG 150
++ +++ F+ R + K S M H A EG ++L +P +T+ + ++
Sbjct: 73 KVEVEINFAGFSGVERRKRKSDKRTSEMEHCIRSAFEGVLLLHLYPHSTITLNIHIVSQD 132
Query: 151 GSDLPVVISCASVALADAGIMMYD-LVA 177
GS L I+ +++AL DAGI M D LVA
Sbjct: 133 GSLLAACINASTLALIDAGIPMTDYLVA 160
>gi|256070058|ref|XP_002571366.1| ribonuclease pH related [Schistosoma mansoni]
Length = 238
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 111/236 (47%), Gaps = 36/236 (15%)
Query: 33 DVDWLRPDSR--GFHQCRPAFFRTGAVNSAS-GSAYAEFGNTKVIVSVFGPRESKKAMMY 89
D+++ P+++ +C P F + N + GSAY E G KV SV GP E ++
Sbjct: 13 DLEYFLPENKVEKAEKCPPDIFFSLETNPITDGSAYIEVGEIKVSCSVNGPTEMRQD--- 69
Query: 90 SNIGRLNCNVSYTTFAT--PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVL 147
+L + + +F + P Q S K S +L A+E +++L FP+ ++ +L
Sbjct: 70 ---SQLVAVLKFASFLSWLPKDVQASIEKKLSRLLLSAIEPSVMLHQFPRGKYEIVTNIL 126
Query: 148 E------SG--GSDLPVVISCASVALADAGIMMYDLVA--SVSVSCLGKNLLIDPVLEEE 197
+ SG G+ L I+CA +AL ++G+ MYDL+ ++ +S LG
Sbjct: 127 DIPSYNSSGLIGNCLAAAITCAGLALLNSGVQMYDLLVGLNLDLSALGN----------- 175
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEW--STPHFNEAMQLCLDASAKLGKIMRSCL 251
++G L +A +P + + L +T +++ +D KL ++RS L
Sbjct: 176 --ENGHLCVAVLPRLRQFSMLYAVDSCMPNTEFLKDSLTHAMDNCIKLADVIRSHL 229
>gi|388511449|gb|AFK43786.1| unknown [Lotus japonicus]
Length = 243
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 8/162 (4%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R +Q RP ++ A GSA G TKV +V+GP+ K N + +
Sbjct: 5 RADGRSPNQLRPLACSRSVLHRAHGSASWAQGETKVFAAVYGPKAGTKK--NENPEKASI 62
Query: 98 NVSYTTFATPVRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPV 156
V++ P GQ G K + +L + LE I +P TT V V+ G+ LP
Sbjct: 63 EVTWK----PNTGQIGQVEKGYEMILKRTLESICIRSIYPNTTTSVIVQVVHDDGALLPC 118
Query: 157 VISCASVALADAGIMMYDLVASVSVSCLGKN-LLIDPVLEEE 197
I+ A AL DAGI + L ++ S + +++DP +EE
Sbjct: 119 AINAACAALVDAGIPLRHLAVAICCSVADNSCIILDPTKQEE 160
>gi|328875787|gb|EGG24151.1| hypothetical protein DFA_06297 [Dictyostelium fasciculatum]
Length = 329
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 100/210 (47%), Gaps = 12/210 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D+R +Q RP +N A GSA G + V+ +V+GP + K A I +
Sbjct: 85 RDDTRLSNQIRPIESEQALLNKADGSAKFSQGKSSVLAAVYGPIDVKTARK-EKISKSVV 143
Query: 98 NVSYTTFATPVRGQGSD-HKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPV 156
+VS+T P G + K+ ++ A+E I+ P+T ++V V + GS +
Sbjct: 144 DVSFT----PATGNTTYFDKEREMLVRNAVESIILTLLHPRTQINVIVQVYSNDGSIISC 199
Query: 157 VISCASVALADAGIMMYDLVASVSVSCLGKN-LLIDPVLEEESYQDGSLMIACMPSRYEV 215
I+ +AL DAGI + L++S+++S N + +DP +EE+ G L + + S+ E+
Sbjct: 200 AINACCLALLDAGIELNCLISSITLSFTHDNQIYLDPTQKEENNSKG-LAVYAINSKSEI 258
Query: 216 TQLTVTGEWSTPHF----NEAMQLCLDASA 241
TG + N A Q C SA
Sbjct: 259 VMTKTTGIIGESLYFQGLNIAKQSCEKVSA 288
>gi|124360770|gb|ABD33427.2| Peptidase S8 and S53, subtilisin, kexin, sedolisin; 3
exoribonuclease [Medicago truncatula]
Length = 241
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 74/162 (45%), Gaps = 10/162 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
RPD R +Q RP ++ A GSA G TKV+ +V+GP+ K
Sbjct: 5 RPDGRSPNQLRPLACSHSVLHRAHGSATWAQGETKVLAAVYGPKAGTKKNENPE------ 58
Query: 98 NVSYTTFATPVRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPV 156
S P G G +++ +L K LE I +P TT V +V+ G+ LP
Sbjct: 59 KASIEVIWKPNTGHVGQADREYEMILKKTLESICIRTIYPNTTTSV--IVVHDDGALLPC 116
Query: 157 VISCASVALADAGIMMYDLVASVSVSCLGKN-LLIDPVLEEE 197
I+ A AL DAGI + L ++ S N +++DP +EE
Sbjct: 117 AINAACAALVDAGIPLRHLAVAICCSVTDNNSIILDPSKKEE 158
>gi|334350293|ref|XP_001366359.2| PREDICTED: exosome complex component MTR3-like, partial
[Monodelphis domestica]
Length = 225
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 83/143 (58%), Gaps = 4/143 (2%)
Query: 113 SDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMM 172
S+ K+ S L +AL A+ L+ +P+ V+V AL+L+ GGS L ++ A +ALADAGI M
Sbjct: 21 SEEKELSLALQEALGPAVQLQRYPRAQVEVSALLLQDGGSALAAGVTAAGLALADAGIEM 80
Query: 173 YDLVASVSVSC---LGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEW-STPH 228
YD+V + +S L+DP+L EE + L +A MP R EVT + +GE S
Sbjct: 81 YDIVVACGLSLPWGFDPIWLLDPILYEEQHTAAGLTVALMPVRNEVTGILGSGEGRSIDC 140
Query: 229 FNEAMQLCLDASAKLGKIMRSCL 251
+ E ++L ++ L +++CL
Sbjct: 141 WAEGVRLGIEGCQGLYPTLQNCL 163
>gi|430813508|emb|CCJ29143.1| unnamed protein product [Pneumocystis jirovecii]
Length = 250
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 106/226 (46%), Gaps = 16/226 (7%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNI 92
++ R D R +++ R + N A GS+Y E GNTKVI V GP E + K+ + +
Sbjct: 8 IEGFRIDGRRWNELRHFTAKVDIDNFADGSSYVEQGNTKVICMVHGPIEPNTKSKVSLDR 67
Query: 93 GRLNCNVSYTTFATPVRGQ--GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
R+ ++S F++ R + SD + ++ + + K E AI P++ +++ VL
Sbjct: 68 ERITIDISIAAFSSVERKKRTKSDKRIQEYVACIQKVFEKAIQTGLHPRSEINICIQVLA 127
Query: 149 SGG----SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSL 204
G L I+ S+AL +AGI MYD V++ +V DP+L+ + ++ S+
Sbjct: 128 QDGGMFNRILQTCINAVSLALINAGIPMYDYVSASTVGSTDT----DPLLDLNAVEENSI 183
Query: 205 ---MIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIM 247
+A + ++ L F + L L ++ KIM
Sbjct: 184 SWYTVAILGKSEDIILLQTETRIHMEKFEHMLSLALHGCQQIYKIM 229
>gi|256070060|ref|XP_002571367.1| ribonuclease pH related [Schistosoma mansoni]
Length = 239
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 111/237 (46%), Gaps = 37/237 (15%)
Query: 33 DVDWLRPDSR---GFHQCRPAFFRTGAVNSAS-GSAYAEFGNTKVIVSVFGPRESKKAMM 88
D+++ P+++ +C P F + N + GSAY E G KV SV GP E ++
Sbjct: 13 DLEYFLPENKVEKKAEKCPPDIFFSLETNPITDGSAYIEVGEIKVSCSVNGPTEMRQD-- 70
Query: 89 YSNIGRLNCNVSYTTFAT--PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALV 146
+L + + +F + P Q S K S +L A+E +++L FP+ ++ +
Sbjct: 71 ----SQLVAVLKFASFLSWLPKDVQASIEKKLSRLLLSAIEPSVMLHQFPRGKYEIVTNI 126
Query: 147 LE------SG--GSDLPVVISCASVALADAGIMMYDLVA--SVSVSCLGKNLLIDPVLEE 196
L+ SG G+ L I+CA +AL ++G+ MYDL+ ++ +S LG
Sbjct: 127 LDIPSYNSSGLIGNCLAAAITCAGLALLNSGVQMYDLLVGLNLDLSALGN---------- 176
Query: 197 ESYQDGSLMIACMPSRYEVTQLTVTGEW--STPHFNEAMQLCLDASAKLGKIMRSCL 251
++G L +A +P + + L +T +++ +D KL ++RS L
Sbjct: 177 ---ENGHLCVAVLPRLRQFSMLYAVDSCMPNTEFLKDSLTHAMDNCIKLADVIRSHL 230
>gi|225680115|gb|EEH18399.1| 3' exoribonuclease family protein [Paracoccidioides brasiliensis
Pb03]
Length = 350
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 82/319 (25%), Positives = 129/319 (40%), Gaps = 80/319 (25%)
Query: 20 PTRKTRPPIFSGS--------DVDWLRP-DSRGFHQCRPAFFRTGAVNSASGSAYAEFGN 70
P+ TRPP+F+ S + RP SR + R F +TG + SASGSAY EF
Sbjct: 10 PSGDTRPPVFASSLLASNNRRSIALERPIRSRKPDELRKIFLKTGLIPSASGSAYLEFQT 69
Query: 71 T------------------KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG-- 110
+ K+ +V GP+ ++ +S L+ +V + FAT R
Sbjct: 70 STNLPRSKLKTLIPPSSSLKLTCAVHGPKPLPRSAPFSPNLLLSTHVKFAPFATRRRRGY 129
Query: 111 -QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES---------------GGSD- 153
+ + +D L AL+G II E +PK+ +D+ +LE GG D
Sbjct: 130 IRDVNERDLGVHLETALKGVIIGERWPKSGLDITVTILEGEDDRWWGDALSSSPLGGIDG 189
Query: 154 ------LPVVISCASVALADAGIMMYDLVAS----------VSVS---------CLGKNL 188
L I+ AS A+ DA I DL+ + VS + L
Sbjct: 190 WGLMNVLAGCITVASAAIVDARIDCVDLITGGVAAFVENPHIEVSGEPEETNEKGRDRRL 249
Query: 189 LIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQ-------LCLDASA 241
++DP E + ++ M SR E+T+L + G+ T F Q +D +
Sbjct: 250 VLDPDPSEHQAIAAACVVGYMSSRDEITELWLKGD--TSDFQGGSQKGSLGHEALIDGAV 307
Query: 242 KLGKIMRSCLKEAASDEQE 260
+ ++ L EA+ + E
Sbjct: 308 NAARGTQAVLMEASRESAE 326
>gi|367005682|ref|XP_003687573.1| hypothetical protein TPHA_0J03200 [Tetrapisispora phaffii CBS 4417]
gi|357525877|emb|CCE65139.1| hypothetical protein TPHA_0J03200 [Tetrapisispora phaffii CBS 4417]
Length = 246
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 111/229 (48%), Gaps = 14/229 (6%)
Query: 37 LRPDSRGFHQCR--PAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIG 93
LR D R +++ R T A ++A GS+Y E GN K+I V GP+E S ++ S
Sbjct: 12 LRLDGRRWNEVRRFECSINTHA-HAADGSSYLEQGNNKIITLVKGPKEPSLRSQANSLKA 70
Query: 94 RLNCNVSYTTFATPVRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVL 147
++ +V+ T F+ R S HK + + L + E I+L +P+T + + +L
Sbjct: 71 TMDVSVNITRFSKFERSAIS-HKNERRVLEIQTALLRTFEKNIMLHLYPRTQISIQVHIL 129
Query: 148 ESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLID-PVLEEESYQDGSLMI 206
+ G +I+ ++AL DAGI MYD V+ +S+ L+D LEE + ++ +
Sbjct: 130 QQDGGMFASLINGITLALIDAGIAMYDYVSGISIGLFDTTPLLDVNTLEENAM--STVTL 187
Query: 207 ACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAA 255
+ +++ L+V + + + + + +L +M L++ A
Sbjct: 188 GVIGKSEKLSLLSVEDKIPLDRLESVLAIGIAGAHRLRDLMDEELRKHA 236
>gi|67471870|ref|XP_651847.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
gi|56468626|gb|EAL46457.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
gi|449702785|gb|EMD43355.1| 3' exoribonuclease family protein [Entamoeba histolytica KU27]
Length = 238
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 104/228 (45%), Gaps = 14/228 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R + R +++A GSA GNT V VFGP E ++ N
Sbjct: 10 RLDGRRTTEMRKCEMEINFLSTADGSARVRMGNTIVEAVVFGPLEGRR----RNREGAEL 65
Query: 98 NVSYT--TFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
VSY+ TFAT R + + + + +L + E II + P+T +D+ V++ GS
Sbjct: 66 MVSYSQATFATRKRREQMHDRTMIETAELLKQMYEQIIITKLLPETMIDLRVQVMQDDGS 125
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLM---IACM 209
VI+ ++AL DAGI M D+VA+ + +++D +EE+ G++ A M
Sbjct: 126 VTAAVINACTLALIDAGIPMIDIVAAAEGGYIDGKMVVDMNKDEENV--GTVFNVHTAIM 183
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASD 257
V L G+ + + + + + +G M+ ++E ++
Sbjct: 184 QKSGAVALLQTEGKMPLQRLGDLLSIVEEGAKTIGIEMKKRIREYGNE 231
>gi|255082324|ref|XP_002504148.1| predicted protein [Micromonas sp. RCC299]
gi|226519416|gb|ACO65406.1| predicted protein [Micromonas sp. RCC299]
Length = 261
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 99/227 (43%), Gaps = 5/227 (2%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK-AMMYSNI 92
++ LR D R + R A+ + GSA E GNTKV+ +V GP E ++ + +
Sbjct: 6 LEGLRLDGRRPKETRRMRCELTALPGSDGSAVFELGNTKVLAAVHGPHECRRPSERLEDR 65
Query: 93 GRLNCNVSYTTFAT----PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ C VS F+T + S+ + + +E + E ++ +DV VL+
Sbjct: 66 LLVKCEVSMAAFSTGERRRRTKGDRRTNELSTFVRRCIETCVSAELLARSQLDVSIQVLQ 125
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ G ++ A +A+ DAGI M D +A S L L+D EE + +A
Sbjct: 126 ADGGVRAAAVNAAVLAIVDAGIPMQDTMACCSAGYLDDTPLLDLNYMEEGGGGPEVHVAY 185
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAA 255
MP V + + S F A +L LD K+MR + E A
Sbjct: 186 MPQMDRVVAIVTENKASVDVFERAHELALDGCRVASKLMRERMIEHA 232
>gi|443926567|gb|ELU45185.1| mRNA transport regulator 3 [Rhizoctonia solani AG-1 IA]
Length = 264
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 116/250 (46%), Gaps = 32/250 (12%)
Query: 13 ATYSPIDPTRKTRP-----PIFSGSDVDWLRPDSRGFH---QCRPAFFRTGAVNSASGSA 64
A +S D R P PIF ++ D + SR + RP RTG S
Sbjct: 2 AQHSNFDRRRINGPESSSYPIFENNEEDKIPTISRTTRKNDEIRPISKRTGQPTSKRKKP 61
Query: 65 YAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFA-----TPVRGQGSDHKDFS 119
+ +GPRE K Y+ GRL V ++ F+ P+R ++ +
Sbjct: 62 RL------LSQCRYGPREIKAGSTYTENGRLKVEVKFSPFSCKRRRAPIRD--AESPTLA 113
Query: 120 SMLHKALEGAIILETFPKTTVDVFALVLESGG--SDLPVVISCASVALADAGIMMYDL-- 175
S +H++L A+ LE FPK+ +DV+ +LE G S + + AS ALADAGI M L
Sbjct: 114 SQIHQSLLPAVRLELFPKSQLDVYVHILEVDGIESCVGAAATAASAALADAGIDMLGLAV 173
Query: 176 --VASVSVSCLG-KNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEA 232
A+++ S G LL+DP +E G +M+ C+P+ VT + TG H +E
Sbjct: 174 SCTAAINRSVTGYAELLLDPNGQEADAARGLVMVTCLPALGTVTNMIQTGLV---HPDEV 230
Query: 233 MQLCLDASAK 242
+Q C+D K
Sbjct: 231 IQ-CMDVCTK 239
>gi|154346012|ref|XP_001568943.1| putative exosome complex exonuclease rrp41 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134066285|emb|CAM44076.1| putative exosome complex exonuclease rrp41 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|449310620|gb|AGE92537.1| exosome complex exonuclease RRP41 [Leishmania braziliensis]
Length = 246
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 7/161 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES--KKAMMYSNIGR 94
LR D R + R G +++ GS G +KV S+FGPRES K+ + +
Sbjct: 13 LRLDGRRPLEARRMDIVFGTLSACDGSCDITVGQSKVCASIFGPRESLHKQEAKHDKV-L 71
Query: 95 LNCNVSYTTFATPVRGQGSDHKDFSSMLHKAL----EGAIILETFPKTTVDVFALVLESG 150
+ C V+ FA R S + A+ I+L +P + + ++ VL+
Sbjct: 72 VTCEVAVAAFAGESRRNPQRRSKLSEDIDAAVVQVARSVILLSQYPNSQIHIYIEVLQQD 131
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLID 191
G++ I+ A +AL DA + M D+V +SV L +++LID
Sbjct: 132 GNEKVACINAACLALVDANVAMRDVVCCISVGLLDEHMLID 172
>gi|159474468|ref|XP_001695347.1| 3'-5' exoribonuclease PH component of the exosome [Chlamydomonas
reinhardtii]
gi|158275830|gb|EDP01605.1| 3'-5' exoribonuclease PH component of the exosome [Chlamydomonas
reinhardtii]
Length = 245
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 104/224 (46%), Gaps = 5/224 (2%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIG 93
+ LR D R + R + +++A GSA E GNTKV+ +VFGP ++++ +
Sbjct: 7 EGLRLDGRRPRELRRINCQLDVLSNADGSAIFEMGNTKVLAAVFGPHAVTRRSELREEGA 66
Query: 94 RLNCNVSYTTFATPVRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ C S F+T R + + S ++ LE A+I E P++ +DV+ VL++
Sbjct: 67 LVVCEYSMAAFSTGERRRRGKGDRRSTELSMVIRNTLEQAVITELLPRSQIDVYVQVLQA 126
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACM 209
G I+ A +ALA AG+ + DLVA + L L+D E+S L +A
Sbjct: 127 DGGTRCAAINAAVLALAAAGVPLRDLVAGCAAGYLDGTALLDLNYTEDSGGGPDLCVALA 186
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
P + + + F M+L + + +MR+ L E
Sbjct: 187 PRLDSLYLVQMDNRLPVDTFQAVMELAREGCRTISGVMRAALLE 230
>gi|449310644|gb|AGE92549.1| exosome complex exonuclease RRP41 [Leishmania braziliensis]
Length = 246
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 7/161 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES--KKAMMYSNIGR 94
LR D R + R G +++ GS G +KV S+FGPRES K+ + +
Sbjct: 13 LRLDGRRPLEARRMDIVFGTLSACDGSCDITVGQSKVCASIFGPRESLHKQEAKHDKV-L 71
Query: 95 LNCNVSYTTFATPVRGQGSDH----KDFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ C V+ FA R +D + + + I+L +P + + ++ VL+
Sbjct: 72 VTCEVAVAAFAGESRRNPQRRSRLSEDIDAAVVQVARSVILLSQYPNSQIHIYIEVLQQD 131
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLID 191
G++ I+ A +AL DA + M D+V +SV L +++LID
Sbjct: 132 GNEKVACINAACLALVDANVAMRDVVCCISVGLLDEHMLID 172
>gi|60677861|gb|AAX33437.1| RE29317p [Drosophila melanogaster]
Length = 261
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 67/128 (52%), Gaps = 2/128 (1%)
Query: 67 EFGNTKVIVSVFGPRESKKAMMYS-NIGRLNCNVSYTTFAT-PVRGQGSDHKDFSSMLHK 124
E+GNTKV+ V P+E +A N+G LNC V++ F+T + + SSML K
Sbjct: 2 EYGNTKVLAIVAPPKELIRASARRMNMGVLNCYVNFAAFSTGDLDSVPERERHLSSMLTK 61
Query: 125 ALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCL 184
A+E + F +D+ L+L+ G L I+C VAL + GI YDL+ + +
Sbjct: 62 AMEPVVCRTEFLNFQLDIRVLILDDDGCLLSTAINCCGVALVECGISTYDLITASTACIY 121
Query: 185 GKNLLIDP 192
++ ++P
Sbjct: 122 RDHVFLNP 129
>gi|15231368|ref|NP_190207.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|79314404|ref|NP_001030817.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|79314427|ref|NP_001030818.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|79314448|ref|NP_001030819.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|145332769|ref|NP_001078250.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|334185757|ref|NP_001190019.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|7799009|emb|CAB90948.1| putative protein [Arabidopsis thaliana]
gi|27808554|gb|AAO24557.1| At3g46210 [Arabidopsis thaliana]
gi|110736314|dbj|BAF00127.1| hypothetical protein [Arabidopsis thaliana]
gi|222423954|dbj|BAH19939.1| AT3G46210 [Arabidopsis thaliana]
gi|222424492|dbj|BAH20201.1| AT3G46210 [Arabidopsis thaliana]
gi|332644608|gb|AEE78129.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|332644609|gb|AEE78130.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|332644610|gb|AEE78131.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|332644611|gb|AEE78132.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|332644612|gb|AEE78133.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|332644613|gb|AEE78134.1| exosome complex component RRP46 [Arabidopsis thaliana]
Length = 239
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 75/163 (46%), Gaps = 10/163 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R +Q RP ++ GSA G+TKV+ +V+GP+ K +
Sbjct: 5 REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAE------ 58
Query: 98 NVSYTTFATPVRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPV 156
+ P GQ G K++ +L + ++ +L P TT V V+ GS LP
Sbjct: 59 KACFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPC 118
Query: 157 VISCASVALADAGIMMYDLVASVSVSCLGKN--LLIDPVLEEE 197
I+ A AL DAGI M L ++ CL +N L++DP EE
Sbjct: 119 AINAACAALVDAGIPMKHLAVAI-CCCLAENGYLVLDPNKLEE 160
>gi|294659898|ref|XP_462331.2| DEHA2G18194p [Debaryomyces hansenii CBS767]
gi|199434319|emb|CAG90837.2| DEHA2G18194p [Debaryomyces hansenii CBS767]
Length = 245
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 88/169 (52%), Gaps = 7/169 (4%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSAS-GSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNI 92
+ LR D R +++ R R S+S GS+Y E GNTK+I V GP E S ++ S+
Sbjct: 10 EGLRIDGRRWNELRRFECRINTHPSSSDGSSYIEQGNTKIICMVQGPMEPSLRSQTNSSK 69
Query: 93 GRLNCNVSYTTFATPVRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ N+S F+T R + ++ + + L + E ++I + +P+T + + VL
Sbjct: 70 ASIEINLSVANFSTIERKKRLKNEKRLIELKTTLERTFEQSVICKLYPRTVIQINLHVLC 129
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLID-PVLEE 196
G L + + ++AL DAGI MYD V++++ + L+D LEE
Sbjct: 130 QDGGLLAGMTNAITLALIDAGIAMYDYVSAINAGLYDQTPLLDLNTLEE 178
>gi|367014877|ref|XP_003681938.1| hypothetical protein TDEL_0E04840 [Torulaspora delbrueckii]
gi|359749599|emb|CCE92727.1| hypothetical protein TDEL_0E04840 [Torulaspora delbrueckii]
Length = 246
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 90/173 (52%), Gaps = 11/173 (6%)
Query: 35 DWLRPDSRGFHQCR--PAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSN 91
+ LR D R +++ R T + ++A GS+Y E GN KVI V GP+E S ++ + +
Sbjct: 10 EGLRLDGRRWNELRRFECSINTHS-HAADGSSYLEQGNNKVITLVKGPQEPSSRSQVDTA 68
Query: 92 IGRLNCNVSYTTFATPVRGQGSDHKDFSSMLH------KALEGAIILETFPKTTVDVFAL 145
L +V+ T F+ R + S HK+ +L + ++L +P+T +++
Sbjct: 69 KALLRISVNITKFSKTERSKTS-HKNERRVLEMQTALVRTFNKNVMLNVYPRTLINIEVH 127
Query: 146 VLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEES 198
VL+ G + +I+ ++AL DAGI MYD ++ VSV L+D EE+
Sbjct: 128 VLQQDGGIMGSLINGITLALIDAGIAMYDYISGVSVGLYDTTPLLDTNSLEEN 180
>gi|346977346|gb|EGY20798.1| 3' exoribonuclease family protein [Verticillium dahliae VdLs.17]
Length = 291
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 101/224 (45%), Gaps = 41/224 (18%)
Query: 41 SRGFHQCRPA------FFRTGAVNSASGSAYAEF----------GNTKVIVSVFGPRESK 84
SR + RPA F +TG +ASGSAYAE K+I +V GPR
Sbjct: 26 SRNSSRLRPANTMRNLFLKTGIAPAASGSAYAEIEAPAGVSDTHAGMKLICTVHGPRALP 85
Query: 85 KAMMYSNIGRLNCNVSYTTFATPVRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVD 141
++ +S L+ +V Y FAT R + + +D S L AL G +I E +PK+ +D
Sbjct: 86 RSAPFSPYLVLSTHVKYAPFATRQRRGYLRDASERDLSVHLETALRGVVIGERWPKSGLD 145
Query: 142 VFALVLE----------SGGSD---LPVVISCASVALADAGIMMYDLVASVS--VSCLGK 186
V +LE G D + V+ C +VA A D V V+ V+ L +
Sbjct: 146 VTVTILEGDQERGLSQAQGHEDWDMMNVLGGCITVAAAAIADAGIDCVDMVTGGVAALIQ 205
Query: 187 -------NLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGE 223
+++DPV E + +A MPSR EVT L + G+
Sbjct: 206 SSGTQTPQIVLDPVCSEHDNLLAACCVAYMPSRDEVTNLWIKGQ 249
>gi|431908123|gb|ELK11726.1| Exosome complex exonuclease RRP41 [Pteropus alecto]
Length = 287
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 107/271 (39%), Gaps = 54/271 (19%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK------------- 84
R D R + R R G A GSAY E GNTK + V+GP E+
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEASGRAPGAGGGLGRR 72
Query: 85 ---KAMMYSNI--GR--------------------------LNCNVSYTTFATPVRGQGS 113
A +Y+ GR +NC S TF+T R +
Sbjct: 73 RPAHASVYAAHIPGRFNRSKSQSPRTAIRGSRSRALPDRALVNCQYSSATFSTGERKR-R 131
Query: 114 DHKDFSS-----MLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADA 168
H D S L + E AI+ + P + +D++ VL++ G ++ A++A+ DA
Sbjct: 132 PHGDRKSCEMGLQLRQTFEAAILTQLHPCSQIDIYVQVLQADGGTYAACVNAATLAVLDA 191
Query: 169 GIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPH 228
GI + D V + S + L D EE+ L +A +P+ ++ L + H
Sbjct: 192 GIPVRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPASGQIALLEMDARLHEDH 251
Query: 229 FNE----AMQLCLDASAKLGKIMRSCLKEAA 255
A + D L +++R ++EA+
Sbjct: 252 LERVLEAAARAARDVHTVLDRVVRQHVREAS 282
>gi|389585705|dbj|GAB68435.1| exosome complex exonuclease rrp41 [Plasmodium cynomolgi strain B]
Length = 231
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 100/232 (43%), Gaps = 17/232 (7%)
Query: 27 PIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVN---SASGSAYAEFGNTKVIVSVFGPRES 83
P+ + + R D R +CR G N A G A+ E GNTK++ + GP E
Sbjct: 2 PLVEYVNEEGYRIDGRKEDECRLIKISVGNENIFTDADGFAFYELGNTKLLSYIQGPTEL 61
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVF 143
KK+ C++ T + S + S+ + E I+L+ + + +++F
Sbjct: 62 KKS-------EEKCSIKCET-------KDSVTNEISAYIRNICENIILLDLYKNSEINIF 107
Query: 144 ALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGS 203
++E G I+ +AL DAGI + +++ SV L +L+D E +
Sbjct: 108 LYIIERDGGVKHAAINTCILALIDAGIAIKYFISACSVLYLQNRILVDGNQLEINSGAPE 167
Query: 204 LMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAA 255
L + + +++ L E F ++ C+D LG +M+ +KE A
Sbjct: 168 LTMVIELNTHKIILLEFDAEVPIDIFEAMVRTCMDCCVNLGNVMKLTVKENA 219
>gi|167393565|ref|XP_001740629.1| exosome complex exonuclease RRP41 [Entamoeba dispar SAW760]
gi|165895202|gb|EDR22949.1| exosome complex exonuclease RRP41, putative [Entamoeba dispar
SAW760]
Length = 238
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 102/224 (45%), Gaps = 14/224 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R + R +N++ GSA GNT V VFGP E ++ N
Sbjct: 10 RLDGRRTTEMRKCEMEINFLNTSDGSARVRMGNTIVEAVVFGPLEGRR----RNREGAEL 65
Query: 98 NVSYT--TFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
VSY+ TFAT R + + + + +L + E II + P+T +D+ +++ GS
Sbjct: 66 MVSYSQATFATRKRREQMHDRTMIETAELLKQMYEQVIITKLLPETMIDLRVQIMQDDGS 125
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLM---IACM 209
VI+ ++AL DAGI M D+V++ + +++D +EE+ G++ A M
Sbjct: 126 VTAAVINACTLALIDAGIPMIDIVSAAEGGYIDGKMVVDMNKDEENV--GTVFNVHTAIM 183
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
V L G+ + + + + + +G M+ ++E
Sbjct: 184 QKSGAVALLQTEGKMPLQRLGDLLSIVEEGAKTIGIEMKKRIRE 227
>gi|82793240|ref|XP_727962.1| exonuclease RRP41 [Plasmodium yoelii yoelii 17XNL]
gi|23484066|gb|EAA19527.1| exonuclease RRP41, putative [Plasmodium yoelii yoelii]
Length = 218
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 94/206 (45%), Gaps = 15/206 (7%)
Query: 58 NSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPV------RGQ 111
N A G A+ E GNTK++ + GP E KK C++ F +P + +
Sbjct: 8 NDADGFAFYEIGNTKILSYIQGPTELKKT-------DDKCSIKCDVFLSPFNVYDKRKKK 60
Query: 112 GSDH--KDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAG 169
D+ + S+ + E I+L+ + + +++F ++E G I+ +AL DAG
Sbjct: 61 TKDNITNEISAYIRNICENIILLDLYKNSEINIFLYIIERDGGIKHAAINTCILALIDAG 120
Query: 170 IMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHF 229
I + +++ SV L +++D E + L + + +++ L E F
Sbjct: 121 IAIKYFISACSVLYLQNKIIVDGNQLEINSGSPELTMVIELNTHKIILLEFDAEIPIDIF 180
Query: 230 NEAMQLCLDASAKLGKIMRSCLKEAA 255
+Q C+D+ +G++M+ +KE A
Sbjct: 181 ESMVQTCIDSCINIGRVMKLTVKENA 206
>gi|19114994|ref|NP_594082.1| exosomal 3'-to-5' phosphorolytic exoribonuclease Rrp41 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|21759394|sp|O42872.1|RRP41_SCHPO RecName: Full=Exosome complex component ski6; AltName:
Full=Ribosomal RNA-processing protein 41
gi|2706461|emb|CAA15919.1| exosomal 3'-to-5' phosphorolytic exoribonuclease Rrp41 (predicted)
[Schizosaccharomyces pombe]
Length = 242
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 104/232 (44%), Gaps = 6/232 (2%)
Query: 29 FSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE---SKK 85
F ++ LR D R + + R R G S +GSA+ E GNTKV+ V GP E K
Sbjct: 4 FEILSLEGLRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSK 63
Query: 86 AMMYSNIGRLNCNV-SYTTFATPVRGQGSDHKDFSSM-LHKALEGAIILETFPKTTVDVF 143
A + N+ S++T R + + L E I E +P++ + V+
Sbjct: 64 ARADRTFVNVEINIASFSTIDVKKRFKSDRRIQLQCLALQNTFEEIIQTELYPRSQISVY 123
Query: 144 ALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGS 203
VL+ G+ + I+ ++AL DAGI + D V + + ++L+D EES
Sbjct: 124 LHVLQDDGAVMASCINATTLALIDAGIPVKDFVCCSTAGIVESDMLLDLNSLEESALSW- 182
Query: 204 LMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAA 255
L +A + + +V + + + M + + S + M+S ++++A
Sbjct: 183 LTVAVLGNIKKVVYMQLETSMHLDYLESVMNMAIAGSEHIYNTMQSAVRQSA 234
>gi|219127863|ref|XP_002184146.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404377|gb|EEC44324.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 274
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 118/245 (48%), Gaps = 28/245 (11%)
Query: 37 LRPDSRGFHQCRPAFFRTG--AVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIG 93
LR D R H+ R + +V++ SGSA E G T V+ +V GP + ++A +
Sbjct: 16 LRNDGRKPHEIRRMRVQMSPLSVSTISGSALVEMGLTVVLATVRGPVDCLRRADENPDQA 75
Query: 94 RLNCNVSYTTFATPVRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVL 147
L+ V F++ + ++ K + S ML +A+E AI+L +PK+ +++ VL
Sbjct: 76 VLDVTVQSAPFSSSADRRVANPKTDRRLIEASHMLKRAMEAAILLHLYPKSRIELVVSVL 135
Query: 148 ESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKN--------LLIDPVLEEESY 199
G L I+ A++AL DAGI M D V + S G + L+D +EES
Sbjct: 136 ADDGGRLCAAINAATLALMDAGIPMKDFVCACSAGLPGTSATPDSHALTLVDLNRQEESS 195
Query: 200 QDGS----LMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAK----LGKIMRSCL 251
G + +A +P R T + E P+ + ++ LDA+ + + I+++ +
Sbjct: 196 TGGQAATHMPVALLPQRN--TLVLAQCEARLPNL-DTLERVLDAATEGCRAVFDILQAAV 252
Query: 252 KEAAS 256
+E A+
Sbjct: 253 REHAA 257
>gi|390371124|dbj|GAB65005.1| hypothetical protein PCYB_042070 [Plasmodium cynomolgi strain B]
Length = 268
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 78/147 (53%), Gaps = 2/147 (1%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
+ R ++R ++ R F + GA + S + GNTK++ ++GP+ K Y G++
Sbjct: 30 FRRINNRKNNEIRDMFIKLGADGYSDASCFYSLGNTKILALIYGPKPDSKNATYDK-GKV 88
Query: 96 NCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLP 155
+ SD ++ ++L + + I+L+ +P+ ++++ L++++ G L
Sbjct: 89 FLEIKSLNMNDDGANDESD-ENIKNLLIECVSSVILLDQYPQCSINIKCLIIQNDGGCLS 147
Query: 156 VVISCASVALADAGIMMYDLVASVSVS 182
++C S+AL +A I M D++ SV+V+
Sbjct: 148 ATLTCISLALINAQIKMRDIIVSVNVN 174
>gi|67473385|ref|XP_652459.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
gi|67478768|ref|XP_654766.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
gi|56469313|gb|EAL47073.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
gi|56471839|gb|EAL49380.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
gi|449708950|gb|EMD48315.1| 3' exoribonuclease family protein [Entamoeba histolytica KU27]
Length = 227
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 99/210 (47%), Gaps = 7/210 (3%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R ++ R + G ++ A GS + N+KVI SV + +++ +
Sbjct: 7 RGDGREANEIRATTIKIGVISGAKGSCLIQKENSKVISSV-QIKTQDESIDF----EFTV 61
Query: 98 NVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVV 157
V++ F + +L ++L I E+ + + V+E GS +
Sbjct: 62 KVTFAQFGNNDLLNKRKEVELQEILTQSLVSRINQESNKGKIICLQVFVMEQDGSVEDSI 121
Query: 158 ISCASVALADAGIMMYDLVASVSVSCL--GKNLLIDPVLEEESYQDGSLMIACMPSRYEV 215
I+ +S+AL D+ I M ++ + +V L +++DP EE ++GS++IAC+PS +
Sbjct: 122 INSSSLALFDSEIQMDSIIIATTVVKLPIYNQVIVDPTALEEEKKEGSVLIACIPSNSSI 181
Query: 216 TQLTVTGEWSTPHFNEAMQLCLDASAKLGK 245
TQ+ ++G + + + LD+ KL K
Sbjct: 182 TQIYMSGVLDPQDISSCLSIALDSCWKLNK 211
>gi|315046942|ref|XP_003172846.1| 3' exoribonuclease [Arthroderma gypseum CBS 118893]
gi|311343232|gb|EFR02435.1| 3' exoribonuclease [Arthroderma gypseum CBS 118893]
Length = 369
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 86/303 (28%), Positives = 136/303 (44%), Gaps = 67/303 (22%)
Query: 20 PTRKTRPPIF-SGSDVD----WLRP-DSRGFHQCRPAFFRTGAVNSASGSAYAEF----G 69
PT TR P+F S +DV + RP +R + R + +TG + SASGSAY E
Sbjct: 46 PTGATRAPVFVSCADVKDKSAFERPARTRDAKELRKIYLKTGVIPSASGSAYFELHPSNS 105
Query: 70 NT-----------KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG---QGSDH 115
NT K+I SV GP+ ++ +S L+ +V + FA R + +
Sbjct: 106 NTSGSLIPPSSSLKLICSVNGPKPLSRSTPFSPNLLLSAHVKFAPFAARRRRAHVRDMNE 165
Query: 116 KDFSSMLHKALEGAIILETFPKTTVDVFALVLES---------------GGSD------- 153
+D L AL GAII + +PK+ +D+ ++LE GSD
Sbjct: 166 RDLGVHLENALRGAIIGDRWPKSGLDITIMILEGEDDRWWGDMSTAETLTGSDGWGMMNI 225
Query: 154 LPVVISCASVALADAGIMMYDLVA-------SVSVSCLG-----KNLLIDPVLEEESYQD 201
L ++ AS A+ADA I DLVA S S G K +++DP E S
Sbjct: 226 LAHCVTVASAAIADARIDCLDLVAGGVAAVVEPSSSAEGATTSTKMVVLDPDPSEHSNIS 285
Query: 202 GSLMIACMPSRYEVTQLTVTGE---------WSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
+ ++ MPS E+T+L + G+ +++P+ + M + A+ ++ +K
Sbjct: 286 SACVVGYMPSLDEITELWLKGDMAGASADGTYASPNHDALMDGAIAAARASHSVLIEAVK 345
Query: 253 EAA 255
E+A
Sbjct: 346 ESA 348
>gi|310798246|gb|EFQ33139.1| 3' exoribonuclease [Glomerella graminicola M1.001]
Length = 291
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 105/246 (42%), Gaps = 41/246 (16%)
Query: 20 PTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEF----------- 68
P T PP++ + P +R + R F +TG +ASGSAY E
Sbjct: 10 PPGATLPPVYDTVSSNST-PRARPANGIRGLFLKTGVTPTASGSAYMEIEPPHSHVKSKS 68
Query: 69 --GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG---QGSDHKDFSSMLH 123
K+I +V GPR ++ +S L+ +V Y FAT R + S +D L
Sbjct: 69 KTNGMKLICTVHGPRSLPRSAPFSPYLVLSTHVKYAPFATRQRRSYLRDSSERDIGVHLD 128
Query: 124 KALEGAIILETFPKTTVDVFALVLES----------GGSD---LPVVISCASVALADA-- 168
AL G II + +PK+ VDV ++E G + + V+ C +VA A
Sbjct: 129 TALRGVIIADRWPKSGVDVIVTIVEGDQEREISHLLGNEEWDMMNVLSGCITVAAAALAD 188
Query: 169 -GIMMYD--------LVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLT 219
GI D LVAS ++++DPV E + +A +PSR E+T L
Sbjct: 189 AGIDCVDMVTGGVAALVASDKDDMASPSIVLDPVSVEHEKILAACCVAYLPSRAEITNLW 248
Query: 220 VTGEWS 225
V G S
Sbjct: 249 VKGHLS 254
>gi|342885065|gb|EGU85174.1| hypothetical protein FOXB_04289 [Fusarium oxysporum Fo5176]
Length = 283
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 111/234 (47%), Gaps = 35/234 (14%)
Query: 41 SRGFHQCRPAFFRTGAVNSASGSAYAEFGNT--------KVIVSVFGPRESKKAMMYSNI 92
+R + R + +TG SASGSAY E + K+ +V GPR ++ +S
Sbjct: 30 TRAPNGIRSQYLQTGLTPSASGSAYLEIESQQDSSSKGMKLSCTVHGPRSLPRSAPFSPH 89
Query: 93 GRLNCNVSYTTFATPVRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
L+ +V Y FAT R + S +D S+ L AL GA+I + +PK+ VDV ++E
Sbjct: 90 MVLSTHVKYAPFATRQRRGYLRDSTERDLSTHLEAALRGALIADRWPKSGVDVVVTIIEG 149
Query: 150 G---------GSD----LPVVISCASVALADAGIMMYDLVASVS--VSCL--GKN----- 187
GS+ + V+ C +VA A D V +VS V+ L G +
Sbjct: 150 DQARQVAVEQGSEEWDMMNVLSGCITVAAAALADAGIDCVDTVSGGVAALVPGADNDEPI 209
Query: 188 LLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASA 241
+++DPV E S + +A +PSR E+T L + G S P + ++ L A A
Sbjct: 210 MVLDPVPSEHSQILAACCVAYLPSRDEITNLWLKG--SLPSSDASLHRDLVARA 261
>gi|407038338|gb|EKE39071.1| 3' exoribonuclease family protein [Entamoeba nuttalli P19]
Length = 238
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 104/228 (45%), Gaps = 14/228 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R + R +++A GSA GNT V VFGP E ++ N
Sbjct: 10 RLDGRRTTEMRKCEMEINFLSTADGSARVRMGNTIVEAVVFGPLEGRR----RNREGAEL 65
Query: 98 NVSYT--TFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
VSY+ TFAT R + + + + +L + E II + P+T +D+ V++ GS
Sbjct: 66 MVSYSQATFATRKRREQMHDRTMIETAELLKQMYEQIIITKLLPETMIDLRVQVMQDDGS 125
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLM---IACM 209
VI+ ++AL DAGI M D+V++ + +++D +EE+ G++ A M
Sbjct: 126 VTAAVINACTLALIDAGIPMIDIVSAAEGGYIDGKMVVDMNKDEENV--GTVFNVHTAIM 183
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASD 257
V L G+ + + + + + +G M+ ++E ++
Sbjct: 184 QKSGAVALLQTEGKMPLQRLGDLLSIVEEGAKTIGIEMKKRIREYGNE 231
>gi|170582819|ref|XP_001896302.1| 3' exoribonuclease family, domain 1 containing protein [Brugia
malayi]
gi|158596526|gb|EDP34857.1| 3' exoribonuclease family, domain 1 containing protein [Brugia
malayi]
Length = 277
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 101/230 (43%), Gaps = 21/230 (9%)
Query: 43 GFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKA--------MMYSNIGR 94
G + R +TG ++ G+ Y EFG+TK+I SV GP+E K+ +Y +
Sbjct: 45 GQNTFRSIVMQTGVLHDQKGTVYVEFGSTKIICSVDGPKEITKSADVDPTEGQIYVFLKN 104
Query: 95 LNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDL 154
++ + + + + + + AL + LE F K +DV VL G L
Sbjct: 105 ISAESNSLSGSNSFSASNKESNRIRNAIESALRSIVCLELFCKAQIDVEITVLNDDGGVL 164
Query: 155 PVVISCASVALADAGIMMYDL-VASVSVSCLGKNLLIDPVL---------EEESYQDG-- 202
+ +S+AL D+GI +YD+ VA+ V +++DP + + E +
Sbjct: 165 AASLIASSLALIDSGIQVYDVCVAAHIVMLTDGRIIVDPSISSFPLSSIPDSEDFPRNAH 224
Query: 203 -SLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
S+ + MPS ++T G A+ + ++ S KL ++R L
Sbjct: 225 LSVTVGIMPSLNQLTCCEFVGIAEPHQLRHAIAVAVENSLKLYPLVRKTL 274
>gi|169595492|ref|XP_001791170.1| hypothetical protein SNOG_00485 [Phaeosphaeria nodorum SN15]
gi|111070860|gb|EAT91980.1| hypothetical protein SNOG_00485 [Phaeosphaeria nodorum SN15]
Length = 251
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 76/149 (51%), Gaps = 8/149 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIG--- 93
LR D R +++ R + +A GS+Y E GNTK++VSV GP E K+A G
Sbjct: 13 LRLDGRRWNELRRIHAQISTQAAADGSSYLEMGNTKILVSVTGPAEGKQAGQRGGNGGQA 72
Query: 94 RLNCNVSYTTFA----TPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
++ +++ F+ G K+ + A EG ++L +P +T+ + ++
Sbjct: 73 KVEVEINFAGFSGMERRRRGGGDKRSKEMEHCVRSAFEGVLLLHLYPHSTITLNIHIISQ 132
Query: 150 GGSDLPVVISCASVALADAGIMMYD-LVA 177
GS L I+ +++AL DAGI M D LVA
Sbjct: 133 DGSLLAACINASTLALIDAGIPMTDYLVA 161
>gi|330917879|ref|XP_003297997.1| hypothetical protein PTT_08574 [Pyrenophora teres f. teres 0-1]
gi|311329045|gb|EFQ93909.1| hypothetical protein PTT_08574 [Pyrenophora teres f. teres 0-1]
Length = 250
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 76/148 (51%), Gaps = 7/148 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI---G 93
LR D R +++ R + +A GS+Y E GNTK++VSV GP E +++
Sbjct: 13 LRLDGRRWNELRRIHAQISTQAAADGSSYLEQGNTKILVSVTGPHEGRQSGQRGGADKQA 72
Query: 94 RLNCNVSYTTFATPVRGQGSDHKDFSSMLH---KALEGAIILETFPKTTVDVFALVLESG 150
++ +++ F+ R + K S M H A EG ++L +P + + + ++
Sbjct: 73 KVEVEINFAGFSGVERRKRKSDKRTSEMEHCIRSAFEGVLLLHLYPHSIITLNIHIVSQD 132
Query: 151 GSDLPVVISCASVALADAGIMMYD-LVA 177
GS L I+ +++AL DAGI M D LVA
Sbjct: 133 GSLLAACINASTLALIDAGIPMTDYLVA 160
>gi|221053137|ref|XP_002257943.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
knowlesi strain H]
gi|193807775|emb|CAQ38480.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
knowlesi strain H]
Length = 268
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 76/153 (49%), Gaps = 14/153 (9%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSN---- 91
+ R ++R ++ R F + G + S + GNTK++ ++GP+ K Y
Sbjct: 30 FKRINNRKNNEIRDMFIKLGTDGYSDASCFYSLGNTKILALIYGPKPDSKNATYDKGKVF 89
Query: 92 --IGRLNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
I LN N R ++ ++L + + I+L+ +P+ ++++ L++++
Sbjct: 90 LEIKSLNMNDD--------RANDESDENIKNLLLECVSSVILLDQYPQCSINIKCLIIQN 141
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVS 182
G L ++C S+AL +A I M D++ SV+V+
Sbjct: 142 DGGCLSATLTCISLALINAQIKMRDIIVSVNVN 174
>gi|451856501|gb|EMD69792.1| hypothetical protein COCSADRAFT_78204 [Cochliobolus sativus ND90Pr]
Length = 327
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 114/259 (44%), Gaps = 56/259 (21%)
Query: 20 PTRKTRPPIFSGSD-----VDWLRP-DSRGFHQCRPAFFRTGAVNSASGSAYAEF----- 68
P+ T P+F+ + V+ LRP SRG ++ R F +T + SASGSAY E
Sbjct: 13 PSGGTSAPVFARTIREPQYVEKLRPTRSRGPNELRRIFLQTSIIPSASGSAYLEIPSSSV 72
Query: 69 ----------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG---QGSDH 115
+ K+ S+ GP+ ++ +S L V + FAT R + +
Sbjct: 73 ANSSSLIAPTSSLKITASIQGPKPLPRSAPFSPSLLLTTTVKFAPFATRHRRGYLRDATE 132
Query: 116 KDFSSMLHKALEGAIILETFPKTTVDVFALVLE-----------SGGSD-------LPVV 157
+D L AL G II E +PK+ V+V +LE SGGS L V+
Sbjct: 133 RDLGVHLETALRGVIIGERWPKSGVEVVVTILEGDEDGWWGDLASGGSATGSGWGLLNVL 192
Query: 158 ISC---ASVALADAGIMMYDLVASVSVSCLGKN----------LLIDPVLEEESYQDGSL 204
C AS A+ DAGI D+V V+ + +N ++DP E +
Sbjct: 193 AGCITVASAAITDAGIDCVDVVCG-GVAAIVRNPSSKNEQELARILDPCPAEHKEVVAAC 251
Query: 205 MIACMPSRYEVTQLTVTGE 223
++ + SR E+T++ + G+
Sbjct: 252 VVGYLASRDEITEMWMKGD 270
>gi|1749490|dbj|BAA13803.1| unnamed protein product [Schizosaccharomyces pombe]
Length = 242
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 101/224 (45%), Gaps = 6/224 (2%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE---SKKAMMYSNIG 93
LR D R + + R R G S +GSA+ E GNTKV+ V GP E KA
Sbjct: 12 LRNDGRRWDEMRNFQCRFGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSKARADRTFV 71
Query: 94 RLNCNV-SYTTFATPVRGQGSDHKDFSSM-LHKALEGAIILETFPKTTVDVFALVLESGG 151
+ N+ S++T R + + L E I E +P++ + V+ VL+ G
Sbjct: 72 NVEINIASFSTIDVKKRFKSDRRIQLQCLALQNTFEEIIQTELYPRSQISVYLHVLQDDG 131
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS 211
+ + I+ ++AL DAGI + D V + + ++L+D EES L +A + +
Sbjct: 132 AVMASCINATTLALIDAGIPVKDFVCCSTAGIVESDMLLDLNSLEESALSW-LTVAVLGN 190
Query: 212 RYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAA 255
+V + + + M + + S + M+S ++++A
Sbjct: 191 IKKVVYMQLETSMHLDYLESVMNMAIAGSEHIYNTMQSAVRQSA 234
>gi|58266980|ref|XP_570646.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134110456|ref|XP_776055.1| hypothetical protein CNBD1030 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258723|gb|EAL21408.1| hypothetical protein CNBD1030 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226879|gb|AAW43339.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 262
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 108/222 (48%), Gaps = 6/222 (2%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSN----I 92
LR D+R ++ R F+ +S+ GS+ A G T V VSVFGPRE + + S+ +
Sbjct: 14 LRQDARRPYELRSTSFQLSTHSSSDGSSTATQGLTTVEVSVFGPREPRNRGLASHDRAVV 73
Query: 93 GRLNCNVSYTTFATPVRGQGSDH-KDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
V + A R +G ++ + + + E I+ +P++ + + VL + G
Sbjct: 74 SVEVGVVPWAAGAGARRTRGDKRLQEIGAAIRQTFEPVIMTHLYPRSEIAIHVQVLSADG 133
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS 211
LP I+ ++AL DAGI + D V+S+S+ L+D EES SL+IA +PS
Sbjct: 134 GILPTSINATTLALIDAGIALLDYVSSISIGLHLLQPLLDLSQPEESDLP-SLVIASLPS 192
Query: 212 RYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
++T + F E + L ++A L + M +K+
Sbjct: 193 SGKITLAQMETRLHVDRFEEMLTLGVEACKVLKEEMDGVVKD 234
>gi|401420330|ref|XP_003874654.1| putative exosome complex exonuclease rrp41 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490890|emb|CBZ26154.1| putative exosome complex exonuclease rrp41 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 246
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 5/169 (2%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIGRL 95
LR D R + R G +++ GS G +KV SVFGPRES K + +
Sbjct: 13 LRLDGRRPREARRMDIAFGTLSACDGSCDITLGQSKVCASVFGPRESLHKQEAKHDKALV 72
Query: 96 NCNVSYTTFATPVRGQGSDH----KDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C V+ FA R +D + + + I+L +P + + ++ VL+ G
Sbjct: 73 TCEVAVAAFAGENRRNPQRRSRLSEDIGAAVVQVARSVILLSQYPNSQIHIYIEVLQQDG 132
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQ 200
++ I+ A +AL DA + M D V + L +++LID +E Q
Sbjct: 133 NEKIACINAACLALIDANVAMRDAVCCIDAGILDEHMLIDLTNDELRSQ 181
>gi|66475762|ref|XP_627697.1| archeo-eukaryotice exosomal RNAse PH [Cryptosporidium parvum Iowa
II]
gi|32398930|emb|CAD98395.1| ribonuclease PH-like protein, possible [Cryptosporidium parvum]
gi|46229123|gb|EAK89972.1| archeo-eukaryotice exosomal RNAse PH [Cryptosporidium parvum Iowa
II]
gi|323509005|dbj|BAJ77395.1| cgd6_3540 [Cryptosporidium parvum]
Length = 303
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 99/222 (44%), Gaps = 36/222 (16%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
+R D R F + RP RTG + +A GSAY GNTKV+ ++GP K+ + L
Sbjct: 45 LIRNDDRQFEELRPITIRTGVIENADGSAYFSIGNTKVLCGIYGPNLCKQNPIEDG---L 101
Query: 96 NCNVSYTTFA---------TPVRGQG----SDHKDFSSMLHKALEGAIILETFPKTTVDV 142
+ +V YT + + V + SD K S +L K + I E + ++++D
Sbjct: 102 SVSVEYTIGSFCRDSALAKSKVNTENIEIKSDEKIKSILLEKVISSVICHEKYKRSSIDC 161
Query: 143 FALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKN--------------- 187
+ +++ GS IS A ++L +A I + L ++ ++ + N
Sbjct: 162 YFYIIDDDGSAFSAAISAACLSLCNAKIEIIGLFSATNIIAVNSNSLFNHDGKKQTEDEY 221
Query: 188 -LLIDPVLEEESYQDGS----LMIACMPSRYEVTQLTVTGEW 224
+++DP E SY S L I R +V L+ G++
Sbjct: 222 SMILDPTYNEISYLGASNYSTLEIGLCTIRNQVVYLSANGDF 263
>gi|156093968|ref|XP_001613022.1| hypothetical protein [Plasmodium vivax Sal-1]
gi|148801896|gb|EDL43295.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 271
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 78/147 (53%), Gaps = 2/147 (1%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
+ R ++R ++ R F + G+ + S + GNTK++ ++GP+ K Y G++
Sbjct: 30 FRRINNRKNNEIRDMFIKLGSDGYSDASCFYSLGNTKILALIYGPKPDSKNATYDK-GKV 88
Query: 96 NCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLP 155
+ SD ++ ++L + + I+L+ +P+ ++++ L++++ G L
Sbjct: 89 FLEIRSLNMNDDGANDESD-ENIKNLLIECVSSVILLDQYPQCSINIKCLIIQNDGGCLS 147
Query: 156 VVISCASVALADAGIMMYDLVASVSVS 182
++C S+AL +A I M D++ SV+V+
Sbjct: 148 ATLTCISLALTNAQIKMRDIIVSVNVN 174
>gi|297819162|ref|XP_002877464.1| hypothetical protein ARALYDRAFT_485002 [Arabidopsis lyrata subsp.
lyrata]
gi|297323302|gb|EFH53723.1| hypothetical protein ARALYDRAFT_485002 [Arabidopsis lyrata subsp.
lyrata]
Length = 242
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 75/166 (45%), Gaps = 16/166 (9%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R +Q RP ++ GSA G+TKV+ +V+GP+ K N
Sbjct: 5 REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKK---------NE 55
Query: 98 NVSYTTFAT---PVRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSD 153
N F P GQ G K++ ++ + ++ +L P TT V V+ GS
Sbjct: 56 NAEKACFEVIWKPKTGQIGKVEKEYEMIMKRTIQSICVLTVNPNTTTSVIIQVVHDDGSL 115
Query: 154 LPVVISCASVALADAGIMMYDLVASVSVSCLGKN--LLIDPVLEEE 197
LP I+ A AL DAGI M L ++ CL N L++DP EE
Sbjct: 116 LPCAINAACAALVDAGIPMKHLAVAI-CCCLADNGYLVLDPNKLEE 160
>gi|449303838|gb|EMC99845.1| hypothetical protein BAUCODRAFT_352759 [Baudoinia compniacensis
UAMH 10762]
Length = 253
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 80/152 (52%), Gaps = 6/152 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSNIGR 94
LR D R +++ R +S+ GSAY E GNTK++ +V GP+E + S+ +
Sbjct: 13 LRLDGRRWNELRRLHASLSVQSSSDGSAYLEQGNTKILATVSGPQEPVRRTGRDGSSEAK 72
Query: 95 LNCNVSYTTFA---TPVRGQGSDH-KDFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ V+ T F+ R +G ++ + +A +G ++ +P + V+V VL
Sbjct: 73 IEVEVNVTPFSGTDRKRRAKGEKRVQELQLTVARAFQGVVLGHLYPHSVVEVRLHVLSQD 132
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVS 182
GS L ++ A++AL DAGI M D +A+ +V+
Sbjct: 133 GSLLAACLNAATLALIDAGIPMTDYIAACTVA 164
>gi|401885352|gb|EJT49471.1| 3'-to-5' phosphorolytic exoribonuclease, Ski6p [Trichosporon asahii
var. asahii CBS 2479]
Length = 254
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 100/226 (44%), Gaps = 14/226 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D+R + R G A GS+ G T V +VFGPRE K+ +
Sbjct: 12 LRHDNRRPFELRSLSCALGVHPQADGSSQVSQGLTTVQAAVFGPREPKQ---KAGAAHDK 68
Query: 97 CNVSYTTFATP-VRGQGS-------DHK--DFSSMLHKALEGAIILETFPKTTVDVFALV 146
NV P +GQG D + + + + + E I + +P++ + V V
Sbjct: 69 ANVVVEVGVVPWAQGQGQGRGRTRGDKRLLEIGAAIRQTFEPVIQVGLYPRSEIAVQVQV 128
Query: 147 LESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMI 206
L++ G LP I+ ++AL DAGI M+D V SVSV L+D EE+ SL++
Sbjct: 129 LQADGGILPTAINAVTLALIDAGIAMHDYVTSVSVGLHLTQALLDLSAPEENDLP-SLVV 187
Query: 207 ACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
A +P+ ++T + F ++L +A + M +K
Sbjct: 188 ASLPNSGKITLAQMETRLHVDRFEVMLRLGTEACKVIKDDMEQVVK 233
>gi|296804100|ref|XP_002842902.1| 3' exoribonuclease family protein [Arthroderma otae CBS 113480]
gi|238845504|gb|EEQ35166.1| 3' exoribonuclease family protein [Arthroderma otae CBS 113480]
Length = 336
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 131/306 (42%), Gaps = 70/306 (22%)
Query: 20 PTRKTRPPIF-SGSD-------VDWLRPD-SRGFHQCRPAFFRTGAVNSASGSAYAEF-- 68
P TR P+F S SD + RP +R + R + +TG + SASGSAY E
Sbjct: 10 PAGGTRAPVFVSCSDSKDKSQSATFERPSRTRRAKELRKIYLKTGVIPSASGSAYLELHP 69
Query: 69 ----GNT---------KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG---QG 112
NT K+I SV GP+ ++ +S L+ +V + FA R +
Sbjct: 70 SNPSANTSLIPPASSLKLICSVNGPKPLPRSAPFSPNLLLSAHVKFAPFANRRRRAHIRD 129
Query: 113 SDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES---------------GGSD---- 153
+ +D L AL GAII + +PK+ +DV ++LE GSD
Sbjct: 130 MNERDLGVHLENALRGAIIGDRWPKSGLDVTVMILEGEDDRWWGDMSTAETVTGSDGWGM 189
Query: 154 ---LPVVISCASVALADAGIMMYDLVASVSVSCL------------GKNLLIDPVLEEES 198
L ++ AS A+ADA I LVA + + + +++DP E
Sbjct: 190 MNVLAHCVTVASAAIADARIDCLGLVAGGVAAVVEAPSPREGAAASAQTVVLDPDPSEHV 249
Query: 199 YQDGSLMIACMPSRYEVTQLTVTGE---------WSTPHFNEAMQLCLDASAKLGKIMRS 249
+ ++ MPS E+T+L + G+ +++P+ + M + A+ ++
Sbjct: 250 NISSACVVGYMPSLDEITELWLKGDLPSASSDGTYASPNHDVLMDGAIAAAKASHTVLVE 309
Query: 250 CLKEAA 255
++E+A
Sbjct: 310 AVRESA 315
>gi|430812511|emb|CCJ30094.1| unnamed protein product [Pneumocystis jirovecii]
gi|430814626|emb|CCJ28166.1| unnamed protein product [Pneumocystis jirovecii]
Length = 273
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 93/176 (52%), Gaps = 7/176 (3%)
Query: 53 RTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVR--- 109
+TG + A GSAY E K++ +V+GP++ K A +S+ L C V Y FA +
Sbjct: 2 KTGLITKADGSAYLEQERIKMVSAVYGPQQLKNA-PFSSSASLVCEVKYAPFALKQKYGC 60
Query: 110 GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG--SDLPVVISCASVALAD 167
+ KD S L A+ +I L+ PK+ + ++ VLE+ G S I+CAS A+AD
Sbjct: 61 NREIIEKDMSLHLEAAISPSIQLDILPKSVIHIYVFVLEADGELSTFAAAITCASAAIAD 120
Query: 168 AGIMMYDLVASVSVSCLGKN-LLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTG 222
A I DLV + N +++DP E+E+ + SL+I M + E+T+L G
Sbjct: 121 ANIECVDLVTGAAAIINKDNCVIMDPTDEDENDKIFSLVIGYMAVKDELTELWSFG 176
>gi|449542307|gb|EMD33286.1| hypothetical protein CERSUDRAFT_56975 [Ceriporiopsis subvermispora
B]
Length = 278
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 96/226 (42%), Gaps = 18/226 (7%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLN 96
R D R ++ R SA G A G T+V VSVFGPRE+K ++ + LN
Sbjct: 24 RSDGRRQYELRDITIDMTPQGSADGCASIAHGLTQVSVSVFGPREAKQRSQTLHDRAVLN 83
Query: 97 CNVSYTTFATPVRGQGSDHK-------DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
V+ F+T G+ + ++ + E + +P+ +D+F V +
Sbjct: 84 VEVNVLPFST---GERRRRGRADRRILELAASIKATFEPVVQTTLYPRAQIDIFVSVQQQ 140
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSL---MI 206
G LP I+ ++ALA AG+ + D V +VS G L+D EE G L +
Sbjct: 141 DGGLLPACINGTTLALAAAGVPLLDFVCAVSAGVHGAAALLDLSALEE----GDLPHAAV 196
Query: 207 ACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
A +P VT + F E +L DA + MR ++
Sbjct: 197 AVLPRTKRVTLAALETRLHVDRFAEVFRLACDAGQTIHAEMRRAVR 242
>gi|449542303|gb|EMD33282.1| hypothetical protein CERSUDRAFT_76538 [Ceriporiopsis subvermispora
B]
Length = 267
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 97/226 (42%), Gaps = 18/226 (7%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLN 96
R D R ++ R SA G A G T+V VSVFGPRE+K ++ + LN
Sbjct: 14 RSDGRRQYELRDITIDMTPQGSADGCASIAHGLTQVSVSVFGPREAKQRSQTLHDRAVLN 73
Query: 97 CNVSYTTFATPVRGQGSDHK-------DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
V+ F+T G+ + ++ + E + +P+ +D+F V +
Sbjct: 74 VEVNVLPFST---GERRRRGRADRRILELAASIKATFEPVVQTTLYPRAQIDIFVSVQQQ 130
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSL---MI 206
G LP I+ ++ALA AG+ + D V +VS G L+D EE G L +
Sbjct: 131 DGGLLPACINGTTLALAAAGVPLLDFVCAVSAGVHGAAALLDLSALEE----GDLPHAAV 186
Query: 207 ACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
A +P +VT + F E +L DA + MR ++
Sbjct: 187 AVLPRTKKVTLAALETRLHVDRFAEVFRLACDAGQTIHAEMRRAVR 232
>gi|402592143|gb|EJW86072.1| 3' exoribonuclease [Wuchereria bancrofti]
Length = 262
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 98/226 (43%), Gaps = 21/226 (9%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAM----MYSNIGRLNCNVSYTT 103
RP +TG ++ G+ Y EFG+TK+I SV GP+E K+ I NVS +
Sbjct: 35 RPIVMQTGVLHDQKGTVYVEFGSTKIICSVDGPKEITKSTDVDPTEGQIYVFLKNVSAES 94
Query: 104 FATPVRGQGSDHKDFSSMLHKALEGA----IILETFPKTTVDVFALVLESGGSDLPVVIS 159
+ P S +S + A+E A + LE F K +DV VL G L +
Sbjct: 95 NSLPGSNSSSISNKENSRIRNAIESALRSIVCLELFCKAQIDVEITVLNDDGGVLAASLI 154
Query: 160 CASVALADAGIMMYDLVASVSVSCLGKNLLI----------DPVLEEESYQDG---SLMI 206
+S+AL D+GI +YD+ + + L +I + + E + S+ +
Sbjct: 155 ASSLALIDSGIQVYDVCVAAHIVMLTDGRIIVDPSVSSFPPSSISDSEDFPRNAHLSVTV 214
Query: 207 ACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
MPS ++T G A+ + ++ S KL ++R L
Sbjct: 215 GMMPSLNQLTCCEFVGIAEPHQLRHAIAVAVENSLKLYPLVRKTLN 260
>gi|452003009|gb|EMD95466.1| hypothetical protein COCHEDRAFT_1151589 [Cochliobolus
heterostrophus C5]
Length = 327
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 113/260 (43%), Gaps = 58/260 (22%)
Query: 20 PTRKTRPPIFSGSD-----VDWLRP-DSRGFHQCRPAFFRTGAVNSASGSAYAEFGNT-- 71
P+ T P+F+ + V+ LRP SRG ++ R F +T + SASGSAY E ++
Sbjct: 13 PSGGTSAPVFARTIREPQYVEKLRPTRSRGLNELRRIFLQTSIIPSASGSAYLEIPSSSA 72
Query: 72 -------------KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG---QGSDH 115
K+ S+ GP+ ++ +S L V + FAT R + +
Sbjct: 73 ANHSSLIAPTSSLKITASIQGPKPLPRSAPFSPSLLLTTTVKFAPFATRHRRGYLRDATE 132
Query: 116 KDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSD-------------------LPV 156
+D L AL G II E +PK+ V+V +LE G D L V
Sbjct: 133 RDLGVHLETALRGVIIGERWPKSGVEVVVTILE-GDEDGWWGDLASGGSAAGSGWGLLNV 191
Query: 157 VISC---ASVALADAGIMMYDLVASVSVSCLGKN----------LLIDPVLEEESYQDGS 203
+ C AS A+ DAGI D+V V+ + +N ++DP E +
Sbjct: 192 LAGCITVASAAITDAGIDCVDVVCG-GVAAIVRNPSSKNEQELLRILDPCPAEHKEVVAA 250
Query: 204 LMIACMPSRYEVTQLTVTGE 223
++ + SR E+T++ + G+
Sbjct: 251 CVVGYLASRDEITEMWMKGD 270
>gi|71018287|ref|XP_759374.1| hypothetical protein UM03227.1 [Ustilago maydis 521]
gi|46099099|gb|EAK84332.1| hypothetical protein UM03227.1 [Ustilago maydis 521]
Length = 273
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 102/225 (45%), Gaps = 10/225 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVN--SASGSAYAEFGNTKVIVSVFGPRESKK-AMMYSNIG 93
R D R + R + G +A G A G T V +VFGPRE++ A + +
Sbjct: 12 FRIDGRKQFELRSIGIQLGGSQDTAADGCAQITQGLTIVSATVFGPREARSGANVMHDRA 71
Query: 94 RLNCNVSYTTFATPVRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+N VS + + R + + +F++ + E I +P++ +D+F V +
Sbjct: 72 SVNVEVSVAPWGSMERRRRNRGDRRLVEFANSIKSTFEPVIHTHLYPRSQIDIFVQVHQQ 131
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQD-GSLMIAC 208
G LP I+ +++AL DAGI M D VASVS + ++D EE QD + +A
Sbjct: 132 DGGVLPAAINASTLALLDAGIAMQDFVASVSCGIHSTSAMLDLSNTEE--QDLPHVTVAV 189
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
+P ++T ++ F + L + A A L M +++
Sbjct: 190 LPRTKQITLASLETRLHVERFEQIFTLAIQAVAVLHNEMELAVRD 234
>gi|145520971|ref|XP_001446341.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124413818|emb|CAK78944.1| unnamed protein product [Paramecium tetraurelia]
Length = 227
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 10/182 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R Q R F+ S GS + G T+VI V GPR ++ + L
Sbjct: 5 RQDGRNLQQMRNIEFKLAIDLSVDGSCLYKQGLTEVICLVQGPRAKTQSEL------LLI 58
Query: 98 NVSYTTFATPVRGQGS----DHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSD 153
S + F+ + S D+ F+ L ++ E IIL+ K+ + + V+++ GS
Sbjct: 59 EYSVSPFSNIESKRSSKFDKDYSMFAENLKESFENLIILDENGKSEISISVCVIQNDGSS 118
Query: 154 LPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRY 213
V + ++AL DAG+ M D + SV+V NL++D EE G L I+ +
Sbjct: 119 KSAVFNAITLALLDAGVSMKDFLVSVTVGLDQGNLIVDLTQEESKTAQGELTISYQSRKQ 178
Query: 214 EV 215
++
Sbjct: 179 KI 180
>gi|344305201|gb|EGW35433.1| hypothetical protein SPAPADRAFT_58653 [Spathaspora passalidarum
NRRL Y-27907]
Length = 242
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 78/152 (51%), Gaps = 6/152 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAV-NSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNI 92
+ LR D R +++ R + +SA GS+Y E GNTK+I V GP E + K+ + +
Sbjct: 7 EGLRIDGRRWNELRRFECKINTHPHSADGSSYVEQGNTKIICMVRGPMEPAMKSQVNATS 66
Query: 93 GRLNCNVSYTTFATPVRGQGS--DHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ NVS F+T R + S D + + + L + I+ +P+T + V VL
Sbjct: 67 STVEVNVSLANFSTFERKKRSKTDKRITELKTTLERTFNECIMGHLYPRTLISVTVQVLA 126
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVS 180
G L + + ++AL DAGI MYD V+ V+
Sbjct: 127 QDGGLLAAMTNAVTLALIDAGIAMYDYVSGVN 158
>gi|255550900|ref|XP_002516498.1| Exosome complex exonuclease RRP46, putative [Ricinus communis]
gi|223544318|gb|EEF45839.1| Exosome complex exonuclease RRP46, putative [Ricinus communis]
Length = 211
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 81/173 (46%), Gaps = 12/173 (6%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI 92
D+D R D R +Q RP +N A GSA G+TKV+ +V+GP+ K N
Sbjct: 2 DID--RDDGRTPNQLRPLACSRNVLNRAHGSASWCQGDTKVLAAVYGPKPGTKK--NENP 57
Query: 93 GRLNCNVSYTTFATPVRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ V + P GQ G K++ +L + L+ +L P TT V V+ G
Sbjct: 58 EKACIEVIWK----PKTGQIGKVEKEYEMILKRTLQTICVLTINPNTTTSVIVQVVHDDG 113
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKN--LLIDPVLEEESYQDG 202
+ L I+ A AL DAGI M L ++ CL ++ +++DP EE G
Sbjct: 114 ALLTCAINAACAALVDAGIPMKHLAVAIC-CCLSESGYVILDPTKLEEQKMKG 165
>gi|403303026|ref|XP_003942148.1| PREDICTED: uncharacterized protein LOC101043625 [Saimiri
boliviensis boliviensis]
Length = 413
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 104/254 (40%), Gaps = 15/254 (5%)
Query: 14 TYSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV 73
T +P P + R P F G + R + G R +S GN +
Sbjct: 158 TQAPPVPRARLRNPAFGGRPLLGPRGTAPGTAAGPAPLPRQSRRSSPETERSPTAGNCRS 217
Query: 74 IVSVFGPR---ESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSS-----MLHKA 125
S GPR +A + +NC S TF+T R + H D S L +
Sbjct: 218 GRS--GPRGAIRGSRARALPDRALVNCQYSSATFSTGERKR-RPHGDRKSCEMGLQLRQT 274
Query: 126 LEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLG 185
E AI+ + P++ +D++ VL++ G ++ A++A+ DAGI M D V + S +
Sbjct: 275 FEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVD 334
Query: 186 KNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNE----AMQLCLDASA 241
L D EE+ L +A +P+ ++ L + H A Q D
Sbjct: 335 GTALADLSHVEEAAGGPQLALALLPASGQIALLEMDARLHEDHLERVLEAAAQAARDVHT 394
Query: 242 KLGKIMRSCLKEAA 255
L +++R ++EA+
Sbjct: 395 LLDRVVRQHVREAS 408
>gi|320581308|gb|EFW95529.1| exosome component Ski6p, putative [Ogataea parapolymorpha DL-1]
Length = 246
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 87/172 (50%), Gaps = 10/172 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAV-NSASGSAYAEFGNTKVIVSVFGPRESKKAM-----MYS 90
LR D R +++ R + N+A GS+Y + GN+KV+ V GP E + +
Sbjct: 12 LRVDGRRWNELRRFECQINTHPNAADGSSYVQQGNSKVLCLVKGPMEHGANLAAGTKLDP 71
Query: 91 NIGRLNCNVSYTTFATPVRGQGSDH----KDFSSMLHKALEGAIILETFPKTTVDVFALV 146
N L+ N++Y FA+ R + + ++ S +L + I+L+ + +T +D+ V
Sbjct: 72 NGPVLSLNINYPPFASNERKKRPKNDRRLQEISIILKRCFMKTIVLKNYSRTAIDINLTV 131
Query: 147 LESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEES 198
L G L + ++AL DAGI +YD V++VSV + L+D EE+
Sbjct: 132 LAMDGGLLACFCNAITLALIDAGISLYDYVSAVSVGLYDQTPLLDMNALEEN 183
>gi|167537032|ref|XP_001750186.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771348|gb|EDQ85016.1| predicted protein [Monosiga brevicollis MX1]
Length = 1336
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 5/173 (2%)
Query: 43 GFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLNCNVSY 101
G + R + G A GSAY E GNTKV+ + GP +S + S ++C Y
Sbjct: 36 GDDELRSVKAKLGVFEQADGSAYVEQGNTKVLAIINGPHDSDARGPNASGHLTVSCEFIY 95
Query: 102 TTFATPVRGQGS--DHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVV 157
+F+T R S D K + + + + LE ++ + ++T+++ VL++ G L
Sbjct: 96 ASFSTDQRRARSRLDRKLAEQGTRIARTLESVVMGQLLSRSTINLNVQVLQADGGVLATA 155
Query: 158 ISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
I+ AS+A+ DAG+ M D + + + L ++D E + L +A MP
Sbjct: 156 INAASLAMMDAGVPMKDFLCACNAGVLEGVAVLDTNHSEALARGPDLTVAVMP 208
>gi|398024542|ref|XP_003865432.1| exosome complex exonuclease rrp41, putative [Leishmania donovani]
gi|322503669|emb|CBZ38755.1| exosome complex exonuclease rrp41, putative [Leishmania donovani]
Length = 246
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 5/169 (2%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIGRL 95
LR D R + R G +++ GS G +KV VFGPRES K + G +
Sbjct: 13 LRLDGRRPLEARRMDIAFGTLSACDGSCDITLGQSKVCACVFGPRESLHKQEAKHDKGLV 72
Query: 96 NCNVSYTTFATPVRGQGSDH----KDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C V+ FA R +D + + + I+L +P + + ++ VL+ G
Sbjct: 73 TCEVAVAAFAGENRRNPQRRSKLSEDIGAAVVQVARSVILLSQYPNSQIHIYIEVLQKDG 132
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQ 200
++ ++ A +AL DA + M D V + L +++LID +E Q
Sbjct: 133 NEKIACVNAACLALIDANVAMRDAVCCIDAGILDEHMLIDLTNDELRSQ 181
>gi|344232061|gb|EGV63940.1| hypothetical protein CANTEDRAFT_105628 [Candida tenuis ATCC 10573]
Length = 268
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 105/207 (50%), Gaps = 26/207 (12%)
Query: 51 FFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC------------N 98
F +T +++A+GS+Y E G+T V VSVFGPR K + + + C +
Sbjct: 49 FMKTNFISNANGSSYIEHGDTIVQVSVFGPRPIKSSFIEQASFSVECRFLPHLKQDDALD 108
Query: 99 VSYTTFATPVRGQG---SDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG---- 151
+ + P G ++HK SS + L +I+L+ +PK+T+D+ V+E
Sbjct: 109 IDGDHHSNPNGRTGLSYTEHK-ISSFVESCLVPSILLDKYPKSTIDLHITVIEHNSESTS 167
Query: 152 -SDLPVVISCA-SVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACM 209
++L I+ A S+AL D+G+ + D+V + + G+++++DP+ E + ++ M
Sbjct: 168 LTNLVNWITVASSLALVDSGVEVRDIVTAGHIISDGQHVILDPI--EPVSKRTDCLVCFM 225
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLC 236
+ E+ + V G+ + + A++ C
Sbjct: 226 NLKNEIVGIWVDGDLD--NLDTAIEEC 250
>gi|422295380|gb|EKU22679.1| exosome complex component RRP46, partial [Nannochloropsis gaditana
CCMP526]
Length = 244
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 86/197 (43%), Gaps = 35/197 (17%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGP---RESKKAMMYSNIGR 94
RPD R +Q RP G +N A GSA G T V+ +V+GP R S+K +
Sbjct: 27 RPDRRLANQLRPPMCELGPLNRADGSARFAQGQTSVLAAVYGPAAPRFSRKERVEGAAVE 86
Query: 95 LNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDL 154
+ + Y AT S K+ + LE AI LE FP+T + V V E G +
Sbjct: 87 VTVHPHYG-LAT------SSEKEKEGAVKALLEAAICLERFPRTVIHVICQVYEDNGGLM 139
Query: 155 PVVISCASVALADAGIMMYDLVASVSVSCLG-------------------------KNLL 189
+++ AS+A+ +AGI M + +VS++ + LL
Sbjct: 140 ACLMNAASLAVINAGIDMKYVPLTVSLALISPPSATMKALPSLPPSSSTTAPTSSSTYLL 199
Query: 190 IDPVLEEESYQDGSLMI 206
+DP+ EEE ++ I
Sbjct: 200 LDPINEEERQSIAAITI 216
>gi|157877098|ref|XP_001686881.1| putative exosome complex exonuclease rrp41 [Leishmania major strain
Friedlin]
gi|68129956|emb|CAJ09264.1| putative exosome complex exonuclease rrp41 [Leishmania major strain
Friedlin]
Length = 246
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 5/160 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIGRL 95
LR D R + R G +++ GS G +KV VFGPRES K + G +
Sbjct: 13 LRLDGRRPLEARRMDIAFGTLSACDGSCDITLGQSKVCACVFGPRESLHKQEAKHDKGLV 72
Query: 96 NCNVSYTTFATPVRGQGSDH----KDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C V+ FA R +D + + + I+L +P + + ++ VL+ G
Sbjct: 73 TCEVAVAAFAGENRRNPQRRSKLSEDIGAAVVQVARSVILLSQYPNSQIHIYIEVLQQDG 132
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLID 191
++ ++ A +AL DA + M D V + L +++LID
Sbjct: 133 NEKIACVNAACLALIDANVAMRDAVCCIDAGILDEHMLID 172
>gi|224141741|ref|XP_002324223.1| predicted protein [Populus trichocarpa]
gi|222865657|gb|EEF02788.1| predicted protein [Populus trichocarpa]
Length = 243
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 99/235 (42%), Gaps = 27/235 (11%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R Q RP ++ A GSA G+TKV+ +V+GP+ K N +
Sbjct: 5 RDDGRSPSQLRPLSCARNVLHRAHGSASWSQGDTKVLAAVYGPKAGTKK--NENPEKACI 62
Query: 98 NVSYTTFATPVRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPV 156
V + P GQ G K+F +L + L+ IL P TT + V+ G+ L
Sbjct: 63 EVIWK----PKTGQIGKLEKEFEMILKRTLQSICILTLNPNTTTSIIVQVVNDDGALLVC 118
Query: 157 VISCASVALADAGIMMYDLVASVSVSCL--GKNLLIDPV-LEEESYQ------------- 200
I+ A AL DAGI M L ++ CL G +++DP LEE+ +
Sbjct: 119 AINAACAALVDAGIPMKHLAVAI-CCCLAEGGYVILDPTKLEEQKMRGFTYLVFPNSVVS 177
Query: 201 ---DGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
+GS + P + + G S + + ++ AS KL +R L+
Sbjct: 178 VLPEGSSHVEGEPMEHGIITSVTHGVMSVEEYLKCLERGRAASTKLSDFLRRSLQ 232
>gi|242793419|ref|XP_002482157.1| 3' exoribonuclease family protein [Talaromyces stipitatus ATCC
10500]
gi|218718745|gb|EED18165.1| 3' exoribonuclease family protein [Talaromyces stipitatus ATCC
10500]
Length = 339
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 124/308 (40%), Gaps = 68/308 (22%)
Query: 20 PTRKTRPPIFS-------GSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEF---- 68
P TRPP+++ G + R +R + R F +TG + SASGS+Y E
Sbjct: 10 PPSGTRPPVYASLLRNAAGEKAERPR-RARKPTELRKIFLKTGLIPSASGSSYLEIEPAR 68
Query: 69 --GNT-----------KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG---QG 112
NT K+ +V GPR ++ YS L +V Y FA R +
Sbjct: 69 RPTNTRESLIAPATSLKIACAVHGPRPLPRSANYSPNLLLTTHVKYAPFAHRRRKGHIRD 128
Query: 113 SDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE----------SGGSD-----LPVV 157
+ +D L A+ GAII E +PK+ +DV VLE SG SD + V+
Sbjct: 129 ASERDLGVHLETAIRGAIIAERWPKSALDVTITVLEAEDDRWWGDASGSSDASWGMMNVL 188
Query: 158 ISCASVALADAGIMM---YDLVA---------------SVSVSCLGKNLLIDPVLEEESY 199
C + A A DLVA S + LL+DP E
Sbjct: 189 AGCITAAAAAIADARIDCLDLVAGGVAALVTEDEDETDSTNSGSRPPRLLLDPDPAEHQN 248
Query: 200 QDGSLMIACMPSRYEVTQLTVTGEWS-----TPHFNE--AMQLCLDASAKLGKIMRSCLK 252
+ ++ +PSR E+T++ + G+ S TP + ++ LD + + RS L
Sbjct: 249 IVAACVVGYLPSRDEITEIWLKGDTSEVASTTPGSKKVPGHEVLLDGAIDAARAARSVLA 308
Query: 253 EAASDEQE 260
A + E
Sbjct: 309 AAVRESGE 316
>gi|303313275|ref|XP_003066649.1| hypothetical protein CPC735_058740 [Coccidioides posadasii C735
delta SOWgp]
gi|240106311|gb|EER24504.1| hypothetical protein CPC735_058740 [Coccidioides posadasii C735
delta SOWgp]
Length = 790
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 132/304 (43%), Gaps = 68/304 (22%)
Query: 20 PTRKTRPPIF----SGSDVDWL--RP-DSRGFHQCRPAFFRTGAVNSASGSAYAEF---- 68
P T+PP+F S + + RP SR + R F ++G + SASGSAY E
Sbjct: 10 PPGGTQPPVFLPPLSAENQKSIAERPIRSRKAAELRKIFLKSGVIPSASGSAYLELQPSN 69
Query: 69 -------------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFA-TPVRGQGSD 114
+ K++ +V GPR ++ +S L+ +V + FA RG D
Sbjct: 70 DPAYKSKTLIPPSSSLKLVCTVHGPRPLPRSAPFSPNLILSTHVKFAPFAGRRRRGYIRD 129
Query: 115 --HKDFSSMLHKALEGAIILETFPKTTVDVFALVLES---------------GGSD---- 153
+D + L AL G II + +PK+ +DV +LE GG D
Sbjct: 130 MYERDLAVHLETALGGMIIGDRWPKSGLDVTVNILEGEDDRWWGDSLSPGPLGGVDGWGL 189
Query: 154 LPVVISC---ASVALADAGIMMYDLVASVSVSCL---------------GKNLLIDPVLE 195
+ V+ SC AS A+ DA I DL+A + + G++L++DP
Sbjct: 190 MNVLASCITVASAAIVDARIDCLDLLAGGVAAIVEEKDRMSQDTNSKEQGRSLVLDPDPS 249
Query: 196 EESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAA 255
E ++ MPSR E+T++ + G+ S ++ M D + + + ++ + EAA
Sbjct: 250 EHRDIASLCIVGYMPSRDEITEVWLKGDVSGVGYDSLM----DGAVEAARAAQAIVLEAA 305
Query: 256 SDEQ 259
D Q
Sbjct: 306 KDPQ 309
>gi|258596889|ref|XP_001349602.2| 3' exoribonuclease, putative [Plasmodium falciparum 3D7]
gi|254688464|gb|AAC71872.3| 3' exoribonuclease, putative [Plasmodium falciparum 3D7]
Length = 275
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 1/139 (0%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
+ R ++R ++ R F + G + S + GNTK++ +V+GP K YS G++
Sbjct: 30 FKRINNRKNNEIRDMFIKLGEDENFGSSCFYSLGNTKILTTVYGPNPDSKYATYSK-GKV 88
Query: 96 NCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLP 155
+V T D S+L + + I+LE +P+ ++ + L+++ G L
Sbjct: 89 FLDVKSLNINTIGASDRQRDDDIKSLLIECISNIILLEKYPQCSIKIKCLIIQDDGGCLS 148
Query: 156 VVISCASVALADAGIMMYD 174
++C S+AL A I M D
Sbjct: 149 ATLTCISLALIKAQIQMKD 167
>gi|320165922|gb|EFW42821.1| exosome component Rrp46 [Capsaspora owczarzaki ATCC 30864]
Length = 227
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 100/222 (45%), Gaps = 12/222 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R +Q R ++ A GS+ +T + +V+GP E K S+ L+
Sbjct: 4 RADGRMPNQLRELSIEHAVLSRADGSSRFSQRDTSALTAVYGPAEVK-----SSKELLDK 58
Query: 98 NVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVV 157
T F G D ++L +ALE I P+T++ V V+ G+ L
Sbjct: 59 ATVQTVFRPKTGLAGVDDHVCEAILRQALEPVIQRTANPRTSITVIVQVMHDDGALLACA 118
Query: 158 ISCASVALADAGIMMYDLVASVSVSCL-------GKNLLIDPVLEEESYQDGSLMIACMP 210
++ AS+AL DAG+ M ++A+V+ + L + LL+DP LEE++ A
Sbjct: 119 LNSASMALIDAGVPMSAVLAAVTCAWLPAADGSSERRLLLDPTLEEQTAATSIATFAFES 178
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
+ E+ + G+ + + +++ A+A + MR L+
Sbjct: 179 TNQEIVFSSTEGQLTVDEYFYTIEMAQKAAANVLAFMRLSLE 220
>gi|56757493|gb|AAW26913.1| SJCHGC05910 protein [Schistosoma japonicum]
Length = 240
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 30/219 (13%)
Query: 46 QCRPAFFRTGAVNSAS-GSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTF 104
+C P F + N + GSAY E G KV SV GP E ++ +L + + F
Sbjct: 29 KCPPDIFFSLETNPITDGSAYLEMGEIKVACSVNGPTEMRQD------SQLVTMLKFAPF 82
Query: 105 AT--PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE------SG--GSDL 154
+ P Q S + S +L A+E AI+L FP+ ++ +L+ +G G L
Sbjct: 83 LSWLPKDIQASMERKLSRLLLTAIEPAIMLHHFPRGKYEIVTNILDIPAHNSAGLIGDCL 142
Query: 155 PVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYE 214
I+CA +AL ++G+ MYDL+ +++ L + ++G L +A +P +
Sbjct: 143 AAAITCAGLALLNSGVQMYDLLVGLNLD-----------LADLGSENGHLCVAVLPRLRQ 191
Query: 215 VTQL-TVTGEW-STPHFNEAMQLCLDASAKLGKIMRSCL 251
+ L TV +T + ++ ++ KL ++RS L
Sbjct: 192 FSMLYTVDSHMPNTEYLKHSLTHAMENCIKLTDVIRSHL 230
>gi|124808870|ref|XP_001348430.1| exosome complex exonuclease rrp41, putative [Plasmodium falciparum
3D7]
gi|23497324|gb|AAN36869.1|AE014820_19 exosome complex exonuclease rrp41, putative [Plasmodium falciparum
3D7]
Length = 246
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 96/225 (42%), Gaps = 10/225 (4%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNS---ASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
R D R +CR G N G ++ E GNTK+ + GP E ++
Sbjct: 13 RIDGRKNDECRLIKISLGNGNELIDVDGFSFFEIGNTKLFAYIQGPNEYRRP---DEKCL 69
Query: 95 LNCNVSYTTFAT--PVRGQGSDH--KDFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ CNV + F R + D+ ++ SS + I+L+ + + +++F ++E
Sbjct: 70 VKCNVFLSPFNILEKKRKKSKDNVTREISSYIRNICNHIILLDLYKNSEINIFLYIIERD 129
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
G ++ +AL DAGI + +++ SV L N+++D E + L +A
Sbjct: 130 GGLKAAAVNTCILALIDAGIAIKYFISASSVLYLQNNIIVDGNQFEVNSGSPELTLAIDM 189
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAA 255
S + L E F ++ C A +G IM+ +KE A
Sbjct: 190 SSNNIVLLEFDAEVPIDIFQSMLKTCAQACIHVGNIMKLSIKENA 234
>gi|226485759|emb|CAX75299.1| Exosome complex exonuclease MTR3 [Schistosoma japonicum]
gi|226485761|emb|CAX75300.1| Exosome complex exonuclease MTR3 [Schistosoma japonicum]
Length = 240
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 30/219 (13%)
Query: 46 QCRPAFFRTGAVNSAS-GSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTF 104
+C P F + N + GSAY E G KV SV GP E ++ +L + + F
Sbjct: 29 KCPPDIFFSLETNPITDGSAYLEMGEIKVACSVNGPTEMRQD------SQLVTMLKFAPF 82
Query: 105 AT--PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE------SG--GSDL 154
+ P Q S + S +L A+E AI+L FP+ ++ +L+ +G G L
Sbjct: 83 LSWLPKDIQASMERKLSRLLLTAIEPAIMLHHFPRGKYEIVTNILDIPAHNSAGLIGDCL 142
Query: 155 PVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYE 214
I+CA +AL ++G+ MYDL+ +++ L + ++G L +A +P +
Sbjct: 143 AAAITCAGLALLNSGVQMYDLLVGLNLD-----------LADLGSKNGHLCVAVLPRLRQ 191
Query: 215 VTQL-TVTGEW-STPHFNEAMQLCLDASAKLGKIMRSCL 251
+ L TV +T + ++ ++ KL ++RS L
Sbjct: 192 FSMLYTVDSHMPNTEYLKHSLTHAMENCIKLTDVIRSHL 230
>gi|226485757|emb|CAX75298.1| Exosome complex exonuclease MTR3 [Schistosoma japonicum]
gi|226485763|emb|CAX75301.1| Exosome complex exonuclease MTR3 [Schistosoma japonicum]
Length = 240
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 30/219 (13%)
Query: 46 QCRPAFFRTGAVNSAS-GSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTF 104
+C P F + N + GSAY E G KV SV GP E ++ +L + + F
Sbjct: 29 KCPPDIFFSLETNPITDGSAYLEMGEIKVACSVNGPTEMRQD------SQLVTMLKFAPF 82
Query: 105 AT--PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE------SG--GSDL 154
+ P Q S + S +L A+E AI+L FP+ ++ +L+ +G G L
Sbjct: 83 LSWLPKDIQASMERKLSRLLLTAIEPAIMLHHFPRGKYEIVTNILDIPAHNSAGLIGDCL 142
Query: 155 PVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYE 214
I+CA +AL ++G+ MYDL+ +++ L + ++G L +A +P +
Sbjct: 143 AAAITCAGLALLNSGVQMYDLLVGLNLD-----------LADLGSKNGHLCVAVLPRLRQ 191
Query: 215 VTQL-TVTGEW-STPHFNEAMQLCLDASAKLGKIMRSCL 251
+ L TV +T + ++ ++ KL ++RS L
Sbjct: 192 FSMLYTVDSHMPNTEYLKHSLTHAMENCIKLTDVIRSHL 230
>gi|294943374|ref|XP_002783844.1| Exosome complex exonuclease RRP41, putative [Perkinsus marinus ATCC
50983]
gi|239896637|gb|EER15640.1| Exosome complex exonuclease RRP41, putative [Perkinsus marinus ATCC
50983]
Length = 248
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 109/233 (46%), Gaps = 14/233 (6%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE------SKKAMM 88
+ R D R ++ R + G SA GSA + G TKV+ VFGPR + A
Sbjct: 11 EGFRLDGRRPNELRHLTLKIGDAPSADGSATLQQGLTKVVAHVFGPRPLQAASVGRAAGT 70
Query: 89 YSNIGRLNCNVSYTT--FATPVRGQGSDHKDFSS----MLHKALEGAIILETFPKTTVDV 142
+ G NV Y T FAT R + + S+ L + ++ A++ E FPK+ +DV
Sbjct: 71 MARQGEAIVNVVYRTSSFATIDRKRRTTGDRNSTERQLWLQRIIQDAVLTEMFPKSCIDV 130
Query: 143 FALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDG 202
+L+ GS L ++ A+ AL DAGI + D+ ++ +V + I + ES G
Sbjct: 131 HLTILQEDGSALAACVNAAAAALVDAGIPIKDMFSACTVGLVNNQKPIVDLNHAESEGCG 190
Query: 203 S--LMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
+ +A R E+ L + G+ + F A L ++ + + MR+ ++E
Sbjct: 191 GAVVTVAVYQRRKELNYLCLEGKINIESFESAADLAIEGAVTAVRAMRTFIQE 243
>gi|410983990|ref|XP_003998318.1| PREDICTED: exosome complex component MTR3 [Felis catus]
Length = 200
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 90/180 (50%), Gaps = 5/180 (2%)
Query: 77 VFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSD-HKDFSSMLHKALEGAIILETF 135
+ GP ES+ +Y+ T P ++ + L +ALE A+ L +
Sbjct: 8 IRGPEESQPPQLYAADDEEAPAARDPTRLRPXXXXXXXXERELALALQEALEPAVRLGRY 67
Query: 136 PKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCL---GKNLLIDP 192
P+ ++V AL+LE GGS L ++ A++ALADAG+ MYDLV +S L+DP
Sbjct: 68 PRAQLEVSALLLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSRTPEPAPTWLLDP 127
Query: 193 VLEEESYQDGSLMIACMPSRYEVTQLTVTGEWS-TPHFNEAMQLCLDASAKLGKIMRSCL 251
EE + L +A MP +V L +GE T + EA++L L+ +L +++ CL
Sbjct: 128 TRLEEEHAAAGLTVALMPVLNQVAGLLGSGEGGPTESWAEAVRLGLEGCQRLYPVLQQCL 187
>gi|119191880|ref|XP_001246546.1| hypothetical protein CIMG_00317 [Coccidioides immitis RS]
gi|392864223|gb|EJB10765.1| 3' exoribonuclease [Coccidioides immitis RS]
Length = 331
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 129/300 (43%), Gaps = 64/300 (21%)
Query: 20 PTRKTRPPIF----SGSDVDWL--RP-DSRGFHQCRPAFFRTGAVNSASGSAYAEF---- 68
P T+PP+F S + + RP SR + R F ++G + SASGSAY E
Sbjct: 10 PPGGTQPPVFLSPLSAENQKSIAERPIRSRKAAELRKIFLKSGVIPSASGSAYLELQPSN 69
Query: 69 -------------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFA-TPVRGQGSD 114
+ K++ +V GPR ++ +S L+ +V + FA RG D
Sbjct: 70 DPAYKSRTLIPPSSSLKLVCTVHGPRPLPRSAPFSPNLLLSTHVKFAPFAGRRRRGYIRD 129
Query: 115 --HKDFSSMLHKALEGAIILETFPKTTVDVFALVLES---------------GGSD---- 153
+D + L AL G II + +PK+ +DV +LE GG D
Sbjct: 130 MYERDLAVHLETALGGMIIGDRWPKSGLDVTVNILEGEDDRWWGDSLSSGPLGGVDGWGS 189
Query: 154 LPVVISC---ASVALADAGIMMYDLVASVSVSCL---------------GKNLLIDPVLE 195
+ V+ SC AS A+ DA I DL+A + + G+ L++DP
Sbjct: 190 MNVLASCITVASAAIVDARIDCLDLLAGGVAAIVEEKDRMSQDTNSKEQGRYLVLDPDPS 249
Query: 196 EESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAA 255
E ++ MPSR E+T++ + G+ S ++ M ++A+ I+ KE+A
Sbjct: 250 EHRDIASLCIVGYMPSRDEITEVWLKGDVSGVGYDSLMDGAVEAARAAQAIVLEAAKESA 309
>gi|290559254|gb|EFD92594.1| Exoribonuclease, phosphorolytic domain 2 [Candidatus Parvarchaeum
acidophilus ARMAN-5]
Length = 145
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 72/136 (52%), Gaps = 7/136 (5%)
Query: 103 TFATPVRGQ-GSDHKDF--SSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVIS 159
TF+ P R + G D +D S ++ AL AIILE P+ ++V + ++ ++
Sbjct: 1 TFSVPDRAKPGMDRRDIEISQVITNALNRAIILEDMPRAMINVRVYITQADAGTRCASLT 60
Query: 160 CASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDG----SLMIACMPSRYEV 215
++A ADAG+ M DLVA+V+ +G ++ +D EEE + +G + IA +PS+ E+
Sbjct: 61 AGAMACADAGLPMRDLVAAVAAGKIGDHVCLDLSKEEEDFHEGEGATDVPIAFLPSKNEI 120
Query: 216 TQLTVTGEWSTPHFNE 231
L + G S +
Sbjct: 121 LLLQLDGRVSRDELKK 136
>gi|330930200|ref|XP_003302936.1| hypothetical protein PTT_14933 [Pyrenophora teres f. teres 0-1]
gi|311321403|gb|EFQ88972.1| hypothetical protein PTT_14933 [Pyrenophora teres f. teres 0-1]
Length = 327
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 107/253 (42%), Gaps = 57/253 (22%)
Query: 22 RKTRPPIFSGSDVDWLRP-DSRGFHQCRPAFFRTGAVNSASGSAYAEF------------ 68
R R P + ++ LRP SRG ++ R F +T + SASGSAY E
Sbjct: 24 RTVREPQY----IEKLRPTRSRGPNELRRIFLQTSIIPSASGSAYLEIPSSSPCTTSSLI 79
Query: 69 ---GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG---QGSDHKDFSSML 122
+ K+ S+ GP+ ++ +S L V + FAT R + S +D L
Sbjct: 80 PPTSSLKITASIQGPKPLPRSAPFSPSLLLTTTVKFAPFATRHRRGYIRDSTERDLGVHL 139
Query: 123 HKALEGAIILETFPKTTVDVFALVLESGGSD----------------------LPVVISC 160
AL G II E +PK+ V+V +LE G D L I+
Sbjct: 140 ETALRGVIIGERWPKSGVEVVVTILE-GDEDGWWGDSGSEGSASGSGWGLLNVLAGCITV 198
Query: 161 ASVALADAGIMMYDLVASVSVSCLGKN----------LLIDPVLEEESYQDGSLMIACMP 210
AS A+ DAGI D+V V+ + +N ++DP E + ++ +
Sbjct: 199 ASAAMTDAGIDCVDMVCG-GVAAITRNPGSKQGQGLARILDPCPAEHKDVVAACVVGYLG 257
Query: 211 SRYEVTQLTVTGE 223
SR E+T++ + G+
Sbjct: 258 SRDEITEIWMKGD 270
>gi|302667970|ref|XP_003025563.1| hypothetical protein TRV_00203 [Trichophyton verrucosum HKI 0517]
gi|291189678|gb|EFE44952.1| hypothetical protein TRV_00203 [Trichophyton verrucosum HKI 0517]
Length = 304
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 119/277 (42%), Gaps = 64/277 (23%)
Query: 43 GFHQCRPAFF---RTGAVNSASGSAYAEF---------------GNTKVIVSVFGPRESK 84
G QC + +TG + SASGSAY E + K+I SV GP+
Sbjct: 7 GSKQCMVLIYLDLKTGVIPSASGSAYFELHPSNSSSGGSLIPPSSSLKLICSVNGPKPLS 66
Query: 85 KAMMYSNIGRLNCNVSYTTFATPVRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVD 141
++ +S L+ +V + FA R + + +D L AL GAII + +PK+ +D
Sbjct: 67 RSTPFSPNLLLSAHVKFAPFANRRRRAHVRDMNERDLGVHLENALRGAIIGDRWPKSGLD 126
Query: 142 VFALVLES---------------GGSD-------LPVVISCASVALADAGIMMYDL---- 175
+ ++LE GSD L ++ AS A+ADA I DL
Sbjct: 127 ITIMILEGEDDRWWGDMSTAETLTGSDGWGMMNVLAHCVTVASAAIADARIDCLDLVAGG 186
Query: 176 VASVSVSCLG--------KNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGE---- 223
VA+V +C K +++DP E S ++ MPS E+T+L + G+
Sbjct: 187 VAAVVDTCSSGEGATSSTKTVVLDPDPSEHLNISSSCVVGYMPSLDEITELWLKGDMPGA 246
Query: 224 -----WSTPHFNEAMQLCLDASAKLGKIMRSCLKEAA 255
+ +P+ + M + A+ ++ +KE+A
Sbjct: 247 SSDGTYDSPNHDALMGGAIAAAKASHSVLIEAVKESA 283
>gi|350295872|gb|EGZ76849.1| ribosomal protein S5 domain 2-like protein [Neurospora tetrasperma
FGSC 2509]
Length = 273
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 104/243 (42%), Gaps = 31/243 (12%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-------------- 82
LR D R +++ R + +A GS+Y E G+TKV+ V GP E
Sbjct: 13 LRVDGRRWNELRRIHAQIRTQAAADGSSYLEMGHTKVMCVVNGPSEPGPRRGATSGGGGG 72
Query: 83 ---SKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDH-KDFSSMLHKALEGAIILETFPKT 138
SK A + NI +++ RG+G H + S + +AL ++ FP +
Sbjct: 73 GGQSKNAEVAVNI----VIAGFSSVDRKRRGRGDKHILELQSTISQALAASLHTHLFPHS 128
Query: 139 TVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCL--------GKNLLI 190
T+++ VL GS L +I+ A++A DAGI M D VA+ + G + L+
Sbjct: 129 TINISLHVLSQDGSLLAALINAATLACVDAGIPMTDYVAACTAGSTSTYAANDEGADPLL 188
Query: 191 DPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSC 250
D +EE G L +A + V L + + +D ++ +I+
Sbjct: 189 DMNHQEEQELPG-LTVATLGDSDRVAVLVCESRVQVSRLEGMLAVGVDGCKQVREILDRV 247
Query: 251 LKE 253
++E
Sbjct: 248 VRE 250
>gi|70932569|ref|XP_737786.1| exosome complex exonuclease rrp41 [Plasmodium chabaudi chabaudi]
gi|56513462|emb|CAH83474.1| exosome complex exonuclease rrp41, putative [Plasmodium chabaudi
chabaudi]
Length = 227
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 18/222 (8%)
Query: 38 RPDSRGFHQCRPAFFRTGAVN---SASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
R D R + R G N A G A+ E GNTK++ + GP E KK+
Sbjct: 13 RLDGRKCDEYRLIKINMGNQNIFTDADGFAFYEIGNTKILSYIQGPTELKKS-------D 65
Query: 95 LNCNVSYTTFATPVRGQGSDHK--------DFSSMLHKALEGAIILETFPKTTVDVFALV 146
C++ F +P K + S+ + E I+L+ + + +++F +
Sbjct: 66 DKCSIKCDVFLSPFNVYDKRKKKTKDNITNEISAYIRNICENIILLDLYKNSEINIFLYI 125
Query: 147 LESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMI 206
+E G I+ +AL DAGI + +++ SV L +++D E + L +
Sbjct: 126 IERDGGIKHAAINTCILALIDAGIAIKYFISACSVLYLQNQIIVDGNQLEINSGSPELTM 185
Query: 207 ACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMR 248
+ +++ L E F +Q C+D+ +G +M+
Sbjct: 186 VIELNTHKIILLEFDAEVPIDIFESMVQTCIDSCVNIGGVMK 227
>gi|336275813|ref|XP_003352660.1| hypothetical protein SMAC_01493 [Sordaria macrospora k-hell]
gi|380094550|emb|CCC07930.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 273
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 104/243 (42%), Gaps = 31/243 (12%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-------------- 82
LR D R +++ R + +A GS+Y E G+TKV+ V GP E
Sbjct: 13 LRVDGRRWNELRRIHAQIRTQAAADGSSYLEMGHTKVMCVVNGPSEPGPRRGATSGGGGG 72
Query: 83 ---SKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDH-KDFSSMLHKALEGAIILETFPKT 138
SK A + NI +++ RG+G H + S + +AL ++ FP +
Sbjct: 73 GGQSKNAEVAVNI----VIAGFSSVDRKRRGRGDKHILELQSTISQALAASLHTHLFPHS 128
Query: 139 TVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCL--------GKNLLI 190
T+++ VL GS L +I+ A++A DAGI M D VA+ + G + L+
Sbjct: 129 TINISLHVLSQDGSLLAALINAATLACVDAGIPMTDYVAACTAGSTSTYAANDEGADPLL 188
Query: 191 DPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSC 250
D +EE G L +A + V L + + +D ++ +I+
Sbjct: 189 DMNHQEEQELPG-LTVATLGDSDRVAVLVCESRVQVSRLEGMLAVGVDGCKQVREILDRV 247
Query: 251 LKE 253
++E
Sbjct: 248 VRE 250
>gi|320036434|gb|EFW18373.1| 3' exoribonuclease [Coccidioides posadasii str. Silveira]
Length = 312
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 117/272 (43%), Gaps = 57/272 (20%)
Query: 41 SRGFHQCRPAFFRTGAVNSASGSAYAEF-----------------GNTKVIVSVFGPRES 83
SR + R F ++G + SASGSAY E + K++ +V GPR
Sbjct: 19 SRKAAELRKIFLKSGVIPSASGSAYLELQPSNDPAYKSKTLIPPSSSLKLVCTVHGPRPL 78
Query: 84 KKAMMYSNIGRLNCNVSYTTFA-TPVRGQGSD--HKDFSSMLHKALEGAIILETFPKTTV 140
++ +S L+ +V + FA RG D +D + L AL G II + +PK+ +
Sbjct: 79 PRSAPFSPNLILSTHVKFAPFAGRRRRGYIRDMYERDLAVHLETALGGMIIGDRWPKSGL 138
Query: 141 DVFALVLES---------------GGSD----LPVVISC---ASVALADAGIMMYDLVAS 178
DV +LE GG D + V+ SC AS A+ DA I DL+A
Sbjct: 139 DVTVNILEGEDDRWWGDSLSSGPLGGVDGWGLMNVLASCITVASAAIVDARIDCLDLLAG 198
Query: 179 VSVSCL---------------GKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGE 223
+ G++L++DP E ++ MPSR E+T++ + G+
Sbjct: 199 GVAGIVEEKDRMSQDTNSKEQGRSLVLDPDPSEHRDIASLCIVGYMPSRDEITEVWLKGD 258
Query: 224 WSTPHFNEAMQLCLDASAKLGKIMRSCLKEAA 255
S ++ M ++A+ I+ KE+A
Sbjct: 259 VSGVGYDSLMDGAVEAARAAQAIVLEAAKESA 290
>gi|387219993|gb|AFJ69705.1| 3 -5 exoribonuclease rna-binding protein, partial [Nannochloropsis
gaditana CCMP526]
Length = 103
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 58/99 (58%), Gaps = 7/99 (7%)
Query: 111 QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGI 170
Q + + S + +ALE ++ L PK+ V+VF LVL++ G ++ ISCAS+ALA+AGI
Sbjct: 5 QRDEERAASRTVSQALEASVQLAKLPKSVVEVFVLVLQTDGGEVGAAISCASLALAEAGI 64
Query: 171 MMYDLVASVSVSCL----GK---NLLIDPVLEEESYQDG 202
++ LVAS V GK + +DP EE ++G
Sbjct: 65 ELFGLVASCEVVAFTPSEGKREWRVRVDPTAAEEGGEEG 103
>gi|392575535|gb|EIW68668.1| hypothetical protein TREMEDRAFT_31716 [Tremella mesenterica DSM
1558]
Length = 252
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 101/227 (44%), Gaps = 16/227 (7%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D+R ++ R +A GSA G T V V++FGPRE + S+
Sbjct: 14 LRHDARRPYELRSLSLLLSPHPTADGSATVTSGLTSVTVTIFGPREPRIRSSSSH----- 68
Query: 97 CNVSYTT-FATPVRGQGSDHK---------DFSSMLHKALEGAIILETFPKTTVDVFALV 146
+V+ T P Q S K + L ++ E I+ +P++ + + V
Sbjct: 69 DHVTLTVEVGVPPWSQQSGMKRTRGDRRLVEMGMSLKQSFEPVIMGNLYPRSEILINVQV 128
Query: 147 LESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMI 206
L S G LP I+ ++AL DAGI + D + S+S+ L+D EES SL++
Sbjct: 129 LSSDGGILPTAINATTLALIDAGIPLLDYLTSISLGLHLTQPLLDLSQPEESDLP-SLVV 187
Query: 207 ACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
AC+P+ +VT + F E + L ++ + M +KE
Sbjct: 188 ACLPASGKVTLAQMETRLHVDRFEEMLLLGVEGCGVIKMEMERVVKE 234
>gi|146414660|ref|XP_001483300.1| hypothetical protein PGUG_04029 [Meyerozyma guilliermondii ATCC
6260]
gi|146391773|gb|EDK39931.1| hypothetical protein PGUG_04029 [Meyerozyma guilliermondii ATCC
6260]
Length = 252
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 74/142 (52%), Gaps = 18/142 (12%)
Query: 51 FFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVR- 109
F +TG V++ASGSAY E + V VSV+GPR + + + + C + + T V
Sbjct: 43 FLKTGLVDTASGSAYVEADDCIVQVSVYGPRPIRGSFIEKASFSVEC--KFLPYVTKVAA 100
Query: 110 -----------GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDL---- 154
G S + S+ + AL ++LE +PK+T+D++ V+ + + L
Sbjct: 101 EHQNTNPNGKPGMNSIEQRISTYVETALLPCLLLENYPKSTIDIYVTVIANKSASLLELT 160
Query: 155 PVVISCASVALADAGIMMYDLV 176
+++C+S+AL D+ I + D+V
Sbjct: 161 NWIVNCSSLALVDSAIEIKDIV 182
>gi|336463800|gb|EGO52040.1| hypothetical protein NEUTE1DRAFT_89939 [Neurospora tetrasperma FGSC
2508]
Length = 273
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 104/243 (42%), Gaps = 31/243 (12%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-------------- 82
LR D R +++ R + +A GS+Y E G+TKV+ + GP E
Sbjct: 13 LRVDGRRWNELRRIHAQIRTQAAADGSSYLEMGHTKVMCVINGPSEPGPRRGATSGGGGG 72
Query: 83 ---SKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDH-KDFSSMLHKALEGAIILETFPKT 138
SK A + NI +++ RG+G H + S + +AL ++ FP +
Sbjct: 73 GGQSKNAEVAVNI----VIAGFSSVDRKRRGRGDKHILELQSTISQALAASLHTHLFPHS 128
Query: 139 TVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCL--------GKNLLI 190
T+++ VL GS L +I+ A++A DAGI M D VA+ + G + L+
Sbjct: 129 TINISLHVLSQDGSLLAALINAATLACVDAGIPMTDYVAACTAGSTSTYAANDEGADPLL 188
Query: 191 DPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSC 250
D +EE G L +A + V L + + +D ++ +I+
Sbjct: 189 DMNHQEEQELPG-LTVATLGDSDRVAVLVCESRVQVSRLEGMLAVGVDGCKQVREILDRV 247
Query: 251 LKE 253
++E
Sbjct: 248 VRE 250
>gi|123427505|ref|XP_001307267.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas
vaginalis G3]
gi|121888886|gb|EAX94337.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas
vaginalis G3]
Length = 203
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 87/204 (42%), Gaps = 19/204 (9%)
Query: 53 RTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI-GRLNCNVSYTTFATPVRGQ 111
R G + A+GSAY E +TKV +V+GP E + S + G ++C +
Sbjct: 8 RLGDIKGAAGSAYVELNDTKVFAAVYGPMEPENQQQDSALTGIVDC---------IIEDA 58
Query: 112 GSDHKDFSSMLHKALE---GAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADA 168
+ K++ ++ HK L I + + KT + + +LE G S+AL DA
Sbjct: 59 WQNTKEYDALCHKLLHTFSSTIFHKKYFKTLIRISITILEKGELVQDATTLAGSLALIDA 118
Query: 169 GIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPH 228
GI M D V S + L+D + S+ +A +PS E+ + V G S
Sbjct: 119 GIEMKDFVVSCNCG------LVDGKFLPFTSSPRSVRVAILPSTNEIVETEVIGRISPDE 172
Query: 229 FNEAMQLCLDASAKLGKIMRSCLK 252
EA+ D L + +R K
Sbjct: 173 MKEAVHTATDGCLNLIESIRGYFK 196
>gi|303281836|ref|XP_003060210.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458865|gb|EEH56162.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 245
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 106/229 (46%), Gaps = 6/229 (2%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNI 92
++ LR D R + R G + +A GSA GNT+V+ +V GPRE +
Sbjct: 6 LEGLRLDGRRPKETRQMRCAMGVLPAADGSAEFRAGNTRVMCAVHGPRECVNRGERDDER 65
Query: 93 GRLNCNVSYTTFAT---PVRGQGSDHK-DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ C S F+T RG+G + + ++ +ALE +++ P++ ++V VL+
Sbjct: 66 AIIKCEFSQAAFSTGERRARGKGDRRSVELALVIRQALEATVLVHLAPRSEINVMIQVLQ 125
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ G I+ A +A+A+AGI M D +A+ S L L+D EE + +A
Sbjct: 126 ADGGVRAAAINAAVLAIANAGIPMKDTMAACSAGYLDGTPLLDLNYVEEGGGGVRVHVAT 185
Query: 209 MPSRYE-VTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAAS 256
SR + V + + S F L ++ A + K+MR + E S
Sbjct: 186 HASRGDKVVVVQTDNKASVEVFEPVHALAVEGCAVVQKVMREAMIEHTS 234
>gi|312076508|ref|XP_003140893.1| hypothetical protein LOAG_05308 [Loa loa]
gi|307763947|gb|EFO23181.1| hypothetical protein LOAG_05308 [Loa loa]
Length = 264
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 100/225 (44%), Gaps = 21/225 (9%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKA--------MMYSNIGRLNCNV 99
R +TGA++ G+ Y EFG+TK+I SV GP+E K+ +Y + ++
Sbjct: 35 RSIVMQTGALHDQKGTVYVEFGSTKIICSVDGPKEITKSADVNPTEGQVYVFLKNISTEG 94
Query: 100 SYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVIS 159
+ + + + + + AL + LE F K +DV VL G L +
Sbjct: 95 NAVSGSNSSSVSNKEINGTRNAVESALRSIVCLELFCKAQIDVEITVLNDDGGVLAASLI 154
Query: 160 CASVALADAGIMMYDL-VASVSVSCLGKNLLIDP---------VLEEESYQDG---SLMI 206
+S+AL D+GI +YD+ VA+ V +++DP + + E + S+ +
Sbjct: 155 ASSLALVDSGIQVYDVCVAAHIVMLTDGRIIVDPSTNSYPFSSIPDSEEFSGNTHLSVTV 214
Query: 207 ACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
MPS ++ G A+ + +++S KL ++R L
Sbjct: 215 GMMPSLNQLACCEFVGIAEPHQLRHAITVAVESSLKLYPLVRKTL 259
>gi|313217648|emb|CBY38696.1| unnamed protein product [Oikopleura dioica]
gi|313233490|emb|CBY09662.1| unnamed protein product [Oikopleura dioica]
Length = 224
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 73/134 (54%), Gaps = 8/134 (5%)
Query: 51 FFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG 110
+ + +A+GS+Y E+ KV+V+ GP++ K +S G L +SY FA+
Sbjct: 35 LLNSSVIKNANGSSYVEYNGAKVMVACIGPKDLAKREDFSLSGLLKIELSYCAFASRASR 94
Query: 111 QG-----SDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSD---LPVVISCAS 162
+ + K+ + ++ +AL+ I+L+ +PK+ +D+ V+ G ++ + +++
Sbjct: 95 RAPSKTTEEEKEQAQIIEEALKSVILLKRYPKSQIDMRVQVICEGLAETTTMAAIVTACG 154
Query: 163 VALADAGIMMYDLV 176
+A ADAG+ MY +V
Sbjct: 155 LAAADAGLDMYGVV 168
>gi|340714151|ref|XP_003395595.1| PREDICTED: exosome complex component RRP46-like [Bombus terrestris]
Length = 220
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 100/221 (45%), Gaps = 15/221 (6%)
Query: 42 RGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLNCNVS 100
G + RP ++ GSA GNT V+ ++GP E+K + M+Y + + VS
Sbjct: 7 EGEFRLRPMNCELNQLSMPDGSAMLMQGNTTVVAGIYGPIEAKPQKMIYD---KASVEVS 63
Query: 101 YTTFATPVRGQGSDHKDFSSM-LHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVIS 159
Y+ P++G + M + + E AII+ P T + + LE G L I+
Sbjct: 64 YS----PIKGPAKVDDRMTEMYIKETCEAAIIVTFHPATAICINVQELEDSGGILACTIN 119
Query: 160 CASVALADAGIMMYDLVASVSVSCL----GKNLLIDPVLEEESYQDGSLMIACMPSRYEV 215
A +AL +AGI M +A +V+C+ +N+++DP + A + +V
Sbjct: 120 AACLALINAGIPMKFTIA--AVNCMIQEGTENIIVDPDTTQLQEARAEFTFAFDSMKKDV 177
Query: 216 TQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAAS 256
G ++ F EAM+ C S + R+ +K+ A+
Sbjct: 178 ICCNTVGCFTETEFLEAMEKCKHVSQYIFDFYRNLVKKYAN 218
>gi|324512760|gb|ADY45272.1| Exosome complex exonuclease MTR3 [Ascaris suum]
Length = 202
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 93/212 (43%), Gaps = 26/212 (12%)
Query: 52 FRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQ 111
R G ++ GSA+ E G TKV+ ++ GP+E K+M + + S V G
Sbjct: 1 MRCGVFDTRKGSAFIEMGATKVVCTIDGPKEPSKSM--------DTDCSEGVINVQVVGV 52
Query: 112 GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIM 171
S ++ AL I LE K VDV VLE G L + C+S+AL +AGI
Sbjct: 53 AG----LSHVIESALRAIIALEHLSKMQVDVEVTVLEDDGGVLAAALMCSSLALCNAGIQ 108
Query: 172 MYDLVASVSVSCLGKNLLI--DPVLE---EESYQDG--SLMIACMPSRYEVTQLTVTGEW 224
D C+ +++I D L+ S DG S+ +A MPS + G
Sbjct: 109 TLDF-------CVAAHVIITEDGSLKLDASSSEGDGCASVTVALMPSLKQNVCCEHRGIS 161
Query: 225 STPHFNEAMQLCLDASAKLGKIMRSCLKEAAS 256
+ F A+ L +S L ++++ + +S
Sbjct: 162 TLKQFKSALSLAAKSSLYLWPVLKNAITHQSS 193
>gi|396465582|ref|XP_003837399.1| similar to 3' exoribonuclease family protein [Leptosphaeria
maculans JN3]
gi|312213957|emb|CBX93959.1| similar to 3' exoribonuclease family protein [Leptosphaeria
maculans JN3]
Length = 325
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 109/259 (42%), Gaps = 56/259 (21%)
Query: 20 PTRKTRPPIFSGSDVD-----WLRP-DSRGFHQCRPAFFRTGAVNSASGSAYAEF----- 68
P+ T P+F+ + D LRP SRG ++ R F +T + SASGSAY E
Sbjct: 11 PSGGTSAPVFAQTIRDPEYLQKLRPTRSRGPNELRRIFLQTAIIPSASGSAYLEIPSSSP 70
Query: 69 ----------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG---QGSDH 115
+ K+ S+ GP+ ++ +S L V + F T R + +
Sbjct: 71 SSKSTLISPTSSLKITASIQGPKPLPRSAAFSPSLLLTTTVKFAPFGTRQRRGYIRDAAE 130
Query: 116 KDFSSMLHKALEGAIILETFPKTTVDVFALVLE------------------SGGSDLPVV 157
+D L AL G II E +PK+ V+V +LE SG L V+
Sbjct: 131 RDLGVHLETALRGVIIGERWPKSGVEVVITILEGDEDGWWGDSESEGTSKGSGWGLLNVL 190
Query: 158 ISC---ASVALADAGIMMYDLVASVSVSCLGKN----------LLIDPVLEEESYQDGSL 204
C AS A+ DAGI D +A V+ + +N ++DP E +
Sbjct: 191 AGCITVASAAIIDAGIDCVD-IACGGVAAIVRNPDLNDDRELARILDPCPAEHKDVVAAC 249
Query: 205 MIACMPSRYEVTQLTVTGE 223
I + SR E+T++ + G+
Sbjct: 250 AIGYLASRDEITEIWMKGD 268
>gi|384251192|gb|EIE24670.1| ribosomal protein S5 domain 2-like protein [Coccomyxa
subellipsoidea C-169]
Length = 245
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 102/223 (45%), Gaps = 6/223 (2%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIG 93
+ LR D R + R + G + A GSA E GNTKVI + +GP+ + ++ N
Sbjct: 7 EGLRLDGRRPKELRALRCQLGPLPQADGSALFEMGNTKVIATAYGPKVADNRSQALHNRA 66
Query: 94 RLNCNVSYTTFATPVRGQGSDHK-----DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ C+ + F+T R Q + +S + ALE I+L+ FP+ + V VL+
Sbjct: 67 IVKCDYAEAAFSTGNRRQRRGRGDRKTTELASTIRSALEHTILLDLFPRAQIGVSVQVLQ 126
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ G L I+ A +ALA+AGI + D++A+ S L L+D E + + +A
Sbjct: 127 ADGGVLGACINAAMLALANAGIPLRDMIAATSAGYLESTPLLDLNFLESTGAGPEVTLAL 186
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
+ +V LT + F +L + MR+ L
Sbjct: 187 HTNLDKVVILTEDSTIAAEPFEAVTELAQQGCKAVAHFMRAQL 229
>gi|118399581|ref|XP_001032115.1| 3' exoribonuclease family, domain 1 containing protein [Tetrahymena
thermophila]
gi|89286453|gb|EAR84452.1| 3' exoribonuclease family, domain 1 containing protein [Tetrahymena
thermophila SB210]
Length = 240
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 101/224 (45%), Gaps = 7/224 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
R D R ++ R G + GS G T+++ + GP K+ + G LN
Sbjct: 11 FREDGRKKNELRKVDCILGFDQTVEGSCKLIQGLTEIVCLIKGPH--NKSTRRESEGFLN 68
Query: 97 CNVSYTTFATPVRGQGS----DHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
+ F+ R + S D +F+ L + E I+ E +D+ V+++ GS
Sbjct: 69 VQYNVAPFSGTDRRKISKFDKDWNEFTENLRVSFESVILTEQLGSGEIDIIVSVIQADGS 128
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSR 212
+ + S+AL DAGI M D S +V L +L+D +E+ L+I+ +P
Sbjct: 129 AKSSIFNAISLALMDAGIPMKDFTVSSTVISLNSEILLDATYQEQKKASAELIISYLPRS 188
Query: 213 YEVTQLTV-TGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAA 255
+V + + + + S E ++ +D ++ +I+R+ + E++
Sbjct: 189 DQVDFMEMKSSKISQQDTKEMCKIAVDGCKQMYQILRTFVLESS 232
>gi|146104020|ref|XP_001469709.1| putative exosome complex exonuclease rrp41 [Leishmania infantum
JPCM5]
gi|134074079|emb|CAM72821.1| putative exosome complex exonuclease rrp41 [Leishmania infantum
JPCM5]
Length = 246
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 5/169 (2%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIGRL 95
LR D R + R +++ GS G +KV VFGPRES K + G +
Sbjct: 13 LRLDGRRPLEARRMDIAFSTLSACDGSCDITLGQSKVCACVFGPRESLHKQEAKHDKGLV 72
Query: 96 NCNVSYTTFATPVRGQGSDH----KDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C V+ FA R +D + + + I+L +P + + ++ VL+ G
Sbjct: 73 TCEVAVAAFAGENRRNPQRRSKLSEDIGAAVVQVARSVILLSQYPNSQIHIYIEVLQKDG 132
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQ 200
++ ++ A +AL DA + M D V + L +++LID +E Q
Sbjct: 133 NEKIACVNAACLALIDANVAMRDAVCCIDAGILDEHMLIDLTNDELRSQ 181
>gi|302502983|ref|XP_003013452.1| hypothetical protein ARB_00270 [Arthroderma benhamiae CBS 112371]
gi|291177016|gb|EFE32812.1| hypothetical protein ARB_00270 [Arthroderma benhamiae CBS 112371]
Length = 302
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 13/179 (7%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR-L 95
LR D R +++ R + ++SGS+Y GNT V+ +V GP E K++ G +
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVI 73
Query: 96 NCNVSYTTFATPVRGQ-------GSDHK---DFSSMLHKALEGAIILETFPKTTVDVFAL 145
N V+ FA R + G D + + +++L A + I +P++T+ V
Sbjct: 74 NVVVNLAGFANVDRKKKSAAGSGGGDRQATTELATLLRDAFQPHIHAHLYPRSTISVHVS 133
Query: 146 VLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSL 204
VL S GS ++ ++AL DAGI M L+ + +V G+ P + ES Q G +
Sbjct: 134 VLSSDGSLFAACLNACTLALVDAGIPMPGLLCACTVGMSGR--ASTPAVTAESAQIGGI 190
>gi|302667165|ref|XP_003025173.1| hypothetical protein TRV_00655 [Trichophyton verrucosum HKI 0517]
gi|291189263|gb|EFE44562.1| hypothetical protein TRV_00655 [Trichophyton verrucosum HKI 0517]
Length = 302
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 13/179 (7%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR-L 95
LR D R +++ R + ++SGS+Y GNT V+ +V GP E K++ G +
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVI 73
Query: 96 NCNVSYTTFATPVRGQ-------GSDHK---DFSSMLHKALEGAIILETFPKTTVDVFAL 145
N V+ FA R + G D + + +++L A + I +P++T+ V
Sbjct: 74 NVVVNLAGFANVDRKKKSATGSGGGDRQATTELATLLRDAFQPHIHAHLYPRSTISVHVS 133
Query: 146 VLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSL 204
VL S GS ++ ++AL DAGI M L+ + +V G+ P + ES Q G +
Sbjct: 134 VLSSDGSLFAACLNACTLALVDAGIPMPGLLCACTVGMSGR--ASTPAVTAESAQIGEI 190
>gi|66809981|ref|XP_638714.1| hypothetical protein DDB_G0284053 [Dictyostelium discoideum AX4]
gi|60467336|gb|EAL65367.1| hypothetical protein DDB_G0284053 [Dictyostelium discoideum AX4]
Length = 237
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 9/164 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R + RP G++N A GSA +KV+ +V+GP E A I +
Sbjct: 7 RNDGRCENSIRPVESEQGSLNKADGSAKFSQDKSKVLAAVYGPIEVNSARK-EKILKSYV 65
Query: 98 NVSYTTFATPVRGQGS-DHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPV 156
V++T P G + K+ ++ A+E I+ +P+T + V V GS +
Sbjct: 66 EVTFT----PAFGNTNYIDKEKELLIKNAVESMILTTLYPRTQISVILQVFSDDGSIVSC 121
Query: 157 VISCASVALADAGIMMYDLVASVSVSCLGKN--LLIDPVLEEES 198
I+ A +AL DAGI M L+ SV++ C + + +DP EEE+
Sbjct: 122 AINAACLALLDAGIEMNGLLGSVTL-CFNNDGSIYVDPSTEEEN 164
>gi|327296349|ref|XP_003232869.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Trichophyton rubrum CBS 118892]
gi|326465180|gb|EGD90633.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Trichophyton rubrum CBS 118892]
Length = 302
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 86/179 (48%), Gaps = 13/179 (7%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR-L 95
LR D R +++ R + ++SGS+Y GNT V+ +V GP E K++ G +
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVI 73
Query: 96 NCNVSYTTFATPVRGQ-------GSDHK---DFSSMLHKALEGAIILETFPKTTVDVFAL 145
N V+ FA R + G D + + ++ L A + I +P++T+ V
Sbjct: 74 NVVVNLAGFANVDRKKKSATGSGGGDRQATTELANSLRDAFQPHIHAHLYPRSTITVHVS 133
Query: 146 VLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSL 204
VL S GS L ++ ++AL DAGI M L+ + +V G+ P + ES Q G +
Sbjct: 134 VLSSDGSLLAACLNACTLALVDAGIPMPGLLCACTVGMSGR--ASTPAVTAESAQIGGI 190
>gi|298710388|emb|CBJ25452.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 230
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 87/170 (51%), Gaps = 12/170 (7%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIG 93
++ R D R +Q RP G +N A GSA GNT V+ +V+GP +K M + G
Sbjct: 1 MEETRRDGRRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSLRMERSEG 60
Query: 94 RLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
+VS+ P G S + ++L ++LE ++ +P+T V V V+ G+
Sbjct: 61 -ATLDVSF----KPESGITSSADAESEALLRRSLEEVVLRSRYPRTVVSVIIQVIVDDGA 115
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCL-----GKNLLIDPVLEEE 197
L ++ A++AL +AG+ M + SV+ C+ G+++L+DP EE
Sbjct: 116 VLSAALNAATMALLNAGVEMTGMALSVTC-CITATVSGRSVLLDPCKAEE 164
>gi|149066120|gb|EDM15993.1| exosome component 4 (predicted), isoform CRA_b [Rattus norvegicus]
Length = 211
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 10/170 (5%)
Query: 95 LNCNVSYTTFATPVRGQGSDHKDFSS-----MLHKALEGAIILETFPKTTVDVFALVLES 149
+NC S TF+T R + H D S L + E AI+ + P++ +D++ VL++
Sbjct: 38 VNCQYSSATFSTGERKR-RPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQA 96
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACM 209
G ++ A++A+ DAGI M D V + S + L D EE+ L +A +
Sbjct: 97 DGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALL 156
Query: 210 PSRYEVTQLTVTGEWSTPHFNE----AMQLCLDASAKLGKIMRSCLKEAA 255
P+ ++ L + H + A Q D L +++R ++EA+
Sbjct: 157 PASGQIALLEMDSRLHEDHLEQVLEAAAQAARDVHTLLDRVVRQHVQEAS 206
>gi|189205667|ref|XP_001939168.1| 3' exoribonuclease family protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187975261|gb|EDU41887.1| 3' exoribonuclease family protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 327
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 111/260 (42%), Gaps = 58/260 (22%)
Query: 20 PTRKTRPPIFSGSD-----VDWLRP-DSRGFHQCRPAFFRTGAVNSASGSAYAEF----- 68
P+ T P+F+ + ++ LRP SR ++ R F +T + SASGSAY E
Sbjct: 13 PSGGTSAPVFARTIRDPQYIEKLRPTRSRDPNELRRIFLQTSIIPSASGSAYLEIPSSSP 72
Query: 69 ----------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG---QGSDH 115
+ K+ S+ GP+ ++ +S L V + FAT R + S
Sbjct: 73 SATSSLIPPTSSLKITASIQGPKPLPRSAPFSPSLLLTTTVKFAPFATRHRRGYIRDSTE 132
Query: 116 KDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSD-------------------LPV 156
+D L AL G II E +PK+ V+V +LE G D L V
Sbjct: 133 RDLGVHLETALRGVIIGERWPKSGVEVVVTILE-GDEDGWWGDSGSEGSASGSGWGLLNV 191
Query: 157 VISC---ASVALADAGIMMYDLVASVSVSCLGKN----------LLIDPVLEEESYQDGS 203
+ C AS A+ DAGI D+V V+ + +N ++DP E +
Sbjct: 192 LAGCITVASAAITDAGIDCVDMVCG-GVAAITRNPASKQEQGLARILDPCPAEHKDVVAA 250
Query: 204 LMIACMPSRYEVTQLTVTGE 223
++ + SR E+T++ + G+
Sbjct: 251 CVVGYLASRDEITEIWMKGD 270
>gi|328859073|gb|EGG08183.1| hypothetical protein MELLADRAFT_105134 [Melampsora larici-populina
98AG31]
Length = 285
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 94/207 (45%), Gaps = 15/207 (7%)
Query: 20 PTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFG 79
PT + PI + D R D R Q RP +T V+SA+GS+Y E + K+I +V+G
Sbjct: 32 PTFISTEPIKQDNKQDNTRSDGRTNQQFRPIHVKTKVVSSANGSSYLETTDCKLICAVYG 91
Query: 80 PRESKKAMMYSNIGRLNCNVSYT---TFATPVRGQGSDHKDFSSMLHKALEGAIILETFP 136
P+ A S+ LN + +T + + + S LH++L +++L P
Sbjct: 92 PKPRTTA--NSSSSNLNIHFKFTPFSLSTSFTSSISTLESNLSQALHQSLAPSLLLN--P 147
Query: 137 KTTVDVFALVLESGGSDLPVVIS----CASVALADAGIMMYDLVASVSVSCLGK-NLLID 191
D+ VL+S P+ I+ A++AL AG+ LV +S + LLID
Sbjct: 148 TEFYDLHLTVLQSHS---PLSITHPILAATIALGSAGVPTLGLVIGISAAISSDLELLID 204
Query: 192 PVLEEESYQDGSLMIACMPSRYEVTQL 218
P E L ++ + S VT L
Sbjct: 205 PTFIESQNALAHLDLSYLTSIDSVTHL 231
>gi|412985799|emb|CCO16999.1| predicted protein [Bathycoccus prasinos]
Length = 262
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 106/234 (45%), Gaps = 35/234 (14%)
Query: 51 FFRTGAVNSASGSAYAEFGN----TKVIVSVFGPRESKKAMMYSNI----GRLNCNVSYT 102
F + ++SGSA+ + G+ TK+ VSVFGP+++ + G L+ +V+
Sbjct: 27 FLSLNPITNSSGSAFIQLGDGRTTTKIFVSVFGPKKTTSRAQDERVSKLRGTLDVSVTLA 86
Query: 103 TFA-----TPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVV 157
+FA + R D + L K L G ++LE+FPK V+V + ++ G +L +
Sbjct: 87 SFAFKSLESSSRNIKDVEMDLTEKLTKCLRGVVVLESFPKAVVEVRCAIADANGDELRGL 146
Query: 158 ISCASVALADAGIMMYDLVASVS--VSCLGKNLLIDPVLEEESYQD-------------- 201
+ S AL A + + D++ + + + G+ L++ +
Sbjct: 147 VLATSSALMHARVEVRDILCACTAVIEEDGEVRLVEDYTNTNDAKSKSSKNSGGRKKTSS 206
Query: 202 -----GSLMIACMPSRYEVTQLTVTGEW-STPHFNEAMQLCLDASAKLGKIMRS 249
G++ +A MP +VT + G W + + +A +L + ++ +++++
Sbjct: 207 ARKAVGAVTVAYMPRVKKVTNILSVGRWGNANNLKKAEELAMQGCEEVAEVIKA 260
>gi|350422333|ref|XP_003493132.1| PREDICTED: exosome complex component RRP46-like [Bombus impatiens]
Length = 220
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 98/220 (44%), Gaps = 15/220 (6%)
Query: 42 RGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLNCNVS 100
G + RP ++ GSA GNT V+ ++GP E+K + M+Y + + VS
Sbjct: 7 EGEFRLRPMNCELNQLSMPDGSAMLMQGNTAVVAGIYGPIEAKPQKMIYD---KASVEVS 63
Query: 101 YTTFATPVRGQGSDHKDFSSM-LHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVIS 159
Y+ P++G + M + + E AII+ P T + + LE G L I+
Sbjct: 64 YS----PIKGPAKVDDRMTEMYIKETCEAAIIVTFHPATAICINIQELEDSGGILACTIN 119
Query: 160 CASVALADAGIMMYDLVASVSVSCL----GKNLLIDPVLEEESYQDGSLMIACMPSRYEV 215
A +AL +AGI M +A +V+C+ +N+++DP + A +V
Sbjct: 120 AACLALINAGIPMKFTIA--AVNCMIQEGTENIVLDPDTTQLQEARAEFTFAFDSMNKDV 177
Query: 216 TQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAA 255
G ++ F EAM+ C S + R+ +K+ A
Sbjct: 178 ICCNTVGSFTETEFLEAMEKCKQVSQYVFDFYRNLVKKYA 217
>gi|399216737|emb|CCF73424.1| unnamed protein product [Babesia microti strain RI]
Length = 256
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 103/228 (45%), Gaps = 8/228 (3%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGR- 94
R D R ++ R G ++ GSA + G T +IV V GP +S K +N
Sbjct: 13 RLDGRLCNETRNITVSHGEYATSDGSASIKQGLTHIIVLVKGPSDSTYVKQANQTNFASV 72
Query: 95 -LNCNVSYTT-FATPVR-GQGSD--HKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+NC+++ + +T +R G D + S ++ K + II+ ++ + +L+
Sbjct: 73 LINCDINISNNLSTDIRRGTKLDIITAEISLLIKKVFKSIIIVPLSKRSQITFSVEILDC 132
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACM 209
G +I+C ++AL DAG+ + LV S SV L K +L DP E +Y L IA
Sbjct: 133 DGCLKSTIINCCTLALIDAGVAVKSLVFSSSVCYLDKIVLADPTQLETNYSTAELTIATE 192
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASD 257
+ + + S F + CL ++ + I R+ L + A +
Sbjct: 193 SITNNPIYIDLASKVSEEGFKKMYSSCLKSNKEYSHIFRNYLYKYAEN 240
>gi|365539848|ref|ZP_09365023.1| ribonuclease PH [Vibrio ordalii ATCC 33509]
Length = 238
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 97/232 (41%), Gaps = 20/232 (8%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RP+ R Q RP A GS EFGNTKV+ V PR K K +
Sbjct: 1 MRPNDRAADQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEEGVPRWLKGQGKGWVT 60
Query: 90 SNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L T G QG + ++ ++L + LE P+ + V V++
Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMPEVMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA-------GIM----MYDLVASVSVSCLGKNLLIDPVLEEE 197
+ G I+ ASVALADA G + M VA+VSV LG+N+L D E+
Sbjct: 121 ADGGTRTASITGASVALADAFAHLVASGKLKKNPMKGHVAAVSVGILGENILCDLEYVED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRS 249
S D + + M ++ ++ T E E M L A + I+ +
Sbjct: 181 SAADTDMNV-VMTENGKMIEIQGTAEGEPFSHEELMDLLAVAKKGIADIVEA 231
>gi|336122959|ref|YP_004565007.1| ribonuclease PH [Vibrio anguillarum 775]
gi|335340682|gb|AEH31965.1| Ribonuclease PH [Vibrio anguillarum 775]
Length = 238
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 97/232 (41%), Gaps = 20/232 (8%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RP+ R Q RP A GS EFGNTKV+ V PR K K +
Sbjct: 1 MRPNDRAADQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEEGVPRWLKGQGKGWVT 60
Query: 90 SNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L T G QG + ++ ++L + LE P+ + V V++
Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMPEVMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA-------GIM----MYDLVASVSVSCLGKNLLIDPVLEEE 197
+ G I+ ASVALADA G + M VA+VSV LG+N+L D E+
Sbjct: 121 ADGGTRTASITGASVALADAFAYLVASGKLKKNPMKGHVAAVSVGILGENILCDLEYVED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRS 249
S D + + M ++ ++ T E E M L A + I+ +
Sbjct: 181 SAADTDMNV-VMTENGKMIEIQGTAEGEPFSHEELMDLLAVAKKGIADIVEA 231
>gi|328771377|gb|EGF81417.1| hypothetical protein BATDEDRAFT_23824 [Batrachochytrium
dendrobatidis JAM81]
Length = 217
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 89/193 (46%), Gaps = 12/193 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
RPD R Q R G ++ A GSA G + V+ SV+GP S+ + +
Sbjct: 18 RPDKRSVTQLRTMGCVVGMLSRADGSARFTLGKSSVLCSVYGPTASRPR--DEKLDHAHI 75
Query: 98 NVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPV 156
V ++ PV G G+ + + + + +E ++ P+TT+ + VL GS L
Sbjct: 76 QVVFS----PVSGISGTQERTYEHFIRQVVEAIVLSALHPRTTIQITLQVLFDDGSILST 131
Query: 157 VISCASVALADAGIMMYDLVASVSVSCLGKN---LLIDPVLEEESYQDGSLMIACMPSRY 213
I+ A +AL DAGI + + +V+C+ LL+DPVL E S ++ +
Sbjct: 132 AINAAVLALIDAGIPLSKTCS--AVTCMISKEGVLLLDPVLLECSEAQSMHILVPDATFS 189
Query: 214 EVTQLTVTGEWST 226
EV + TG + T
Sbjct: 190 EVLAVHSTGLFET 202
>gi|326477645|gb|EGE01655.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Trichophyton equinum CBS 127.97]
Length = 302
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 13/179 (7%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR-L 95
LR D R +++ R + ++SGS+Y GNT V+ +V GP E K++ G +
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVI 73
Query: 96 NCNVSYTTFATPVRGQ-------GSDHK---DFSSMLHKALEGAIILETFPKTTVDVFAL 145
N V+ FA R + G D + + ++ L A + I +P++T+ V
Sbjct: 74 NVVVNLAGFANVDRKKKSTTGSGGGDRQATTELANSLRDAFQPHIHAHLYPRSTISVHVS 133
Query: 146 VLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSL 204
VL S GS ++ ++AL DAGI M L+ + +V G+ P + ES Q G +
Sbjct: 134 VLSSDGSLFAACLNACTLALVDAGIPMPGLLCACTVGMSGR--ASSPAVTAESAQIGGI 190
>gi|327291858|ref|XP_003230637.1| PREDICTED: exosome complex exonuclease RRP41-like, partial [Anolis
carolinensis]
Length = 188
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 78/168 (46%), Gaps = 10/168 (5%)
Query: 95 LNCNVSYTTFATPVRGQGSDHKD-----FSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+NC S TF+T R + H D S L + E AI+ + +P++ +D++ +L++
Sbjct: 15 VNCQFSLATFSTGERKR-RPHGDRQTSEMSLHLKQTFEAAILTQLYPRSQIDIYVQILQA 73
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACM 209
G + ++ A++A+ DAGI + D V + S + L D EE+ L +A +
Sbjct: 74 DGGNYCASVNAATLAVIDAGIPLRDYVCASSAGFIEDTPLADLNYVEEASGGPQLALALL 133
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQ----LCLDASAKLGKIMRSCLKE 253
P ++ L + H M+ C D L +++R L+E
Sbjct: 134 PKSEQIALLEMNARLHEDHLERIMEAASKACKDVYLVLDQVVREHLQE 181
>gi|340059335|emb|CCC53718.1| putative exosome-associated protein 4 [Trypanosoma vivax Y486]
Length = 238
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 69/146 (47%), Gaps = 6/146 (4%)
Query: 57 VNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFAT----PVRGQG 112
V SA E GNT+VI +V P++ GR+ C V + A+ P+R
Sbjct: 23 VGHCHSSACVELGNTRVICAVHHPQQLIDEYRGER-GRIGCTVRRSARASKGALPLRSGV 81
Query: 113 SDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMM 172
+ KD + L +E +ILE P+ V++ +L G V + AS ALA G M
Sbjct: 82 TPEKDMALALEGIIEQVVILEKIPQLLVELSVEILADDGGLWDAVATSASAALAGGGFEM 141
Query: 173 YDLVASVSVSCLGKN-LLIDPVLEEE 197
YD ++ S + L L++DP EEE
Sbjct: 142 YDSFSACSAALLHDGALVVDPDEEEE 167
>gi|440293108|gb|ELP86270.1| exosome complex exonuclease RRP41, putative [Entamoeba invadens
IP1]
Length = 238
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 100/225 (44%), Gaps = 10/225 (4%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
+ R D R + R G SA GSA GNT V V GP E K+ S
Sbjct: 7 EGYRVDGRRPTEMRKCEMELGFEKSADGSARVRMGNTLVEAVVSGPMEGKRRNHDS--AE 64
Query: 95 LNCNVSYTTFATPVRGQGSDHKDF---SSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
L S TFAT R + ++ S +L + E ++++ P+T++++ VL+ G
Sbjct: 65 LKVFFSQATFATRRRRERMFDRNMAETSELLKQMYEQVVLVKQLPETSIEIRVQVLQDDG 124
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLM---IAC 208
S I+ ++AL DAGI M D+V+S + +++D +EE+ G++ A
Sbjct: 125 SVNAAAINACTLALIDAGIPMSDIVSSAEGGYISGRMVVDMGKDEENA--GTVFNVHTAV 182
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
M + V L G+ E + + + + + G M+ + E
Sbjct: 183 MHNSGTVAILQTEGKMPLKRLGELLSVVEEGAKEAGIQMKEKIME 227
>gi|400596874|gb|EJP64630.1| 3' exoribonuclease family protein [Beauveria bassiana ARSEF 2860]
Length = 270
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 15/155 (9%)
Query: 37 LRPDSRGFHQCR--PAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE---SKKAMMYSN 91
LR D R +++ R A RT ++A GS+Y E G+TKV+ V GP E ++K +N
Sbjct: 13 LRVDGRRWNELRRLHALIRTQ--DAADGSSYLEMGHTKVMCVVSGPSEQQQNQKRGGQAN 70
Query: 92 IGR----LNCNVSYTTFATPVRGQ-GSDHKDFSSM---LHKALEGAIILETFPKTTVDVF 143
R +N N+ F++ R + G + K M + KAL + FP +++ +
Sbjct: 71 ASRDGATVNVNIIIAGFSSVDRKKRGRNDKRIQEMEITIAKALSSNLHTHIFPHSSISIS 130
Query: 144 ALVLESGGSDLPVVISCASVALADAGIMMYDLVAS 178
VL GS L +++ ++AL DAGI M D +A+
Sbjct: 131 LHVLSQDGSLLAALLNATTLALIDAGIPMNDYIAA 165
>gi|238488533|ref|XP_002375504.1| 3' exoribonuclease family protein [Aspergillus flavus NRRL3357]
gi|220697892|gb|EED54232.1| 3' exoribonuclease family protein [Aspergillus flavus NRRL3357]
Length = 313
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 114/296 (38%), Gaps = 60/296 (20%)
Query: 20 PTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEF----------- 68
P TRP +F+ S + RP +TG + SASGSAY E+
Sbjct: 10 PPSGTRPAVFASS-----LNSASDIATGRPQLLKTGLIPSASGSAYLEYEPSASLAAARS 64
Query: 69 ---------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG---QGSDHK 116
K+ +V GP+ ++ +S L ++ Y FA R + + +
Sbjct: 65 SPKSLIPPSSALKLACTVHGPKPLPRSATFSPNLVLTTHIKYAPFAARKRKGHIRDASER 124
Query: 117 DFSSMLHKALEGAIILETFPKTTVDVFALVLES----------GGSDLPV--------VI 158
D L AL G I+ E +PK+ +D+ +LE+ D P I
Sbjct: 125 DLGVHLETALRGVIVAERWPKSGLDITITILEAEDDRWWGDAPDSHDAPWGMMNVLAGCI 184
Query: 159 SCASVALADAGIMMYDLVASVSVSCLGK---------NLLIDPVLEEESYQDGSLMIACM 209
+ AS A++DA I DL+A + + L++D E + ++A M
Sbjct: 185 TAASAAISDARIDCLDLIAGGVAAIVADESEDGEAKPKLMLDTDPAEHKAILSACVVAYM 244
Query: 210 PSRYEVTQLTVTGEWSTPHFN-----EAMQLCLDASAKLGKIMRSCLKEAASDEQE 260
SR E+T++ + G+ S + LD + + S L EA + E
Sbjct: 245 SSRDEITEIWLKGDSSKALLGPDDKRSGHEALLDGAVDAARGAHSVLAEAVRESAE 300
>gi|429730105|ref|ZP_19264757.1| tRNA nucleotidyltransferase [Corynebacterium durum F0235]
gi|429148399|gb|EKX91407.1| tRNA nucleotidyltransferase [Corynebacterium durum F0235]
Length = 325
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 98/227 (43%), Gaps = 23/227 (10%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
+ R D R + RP G N+ +GS EFGNT+V+ + + S G L
Sbjct: 69 FKRADGRAQDEMRPIRITRGFTNNPAGSVLVEFGNTRVMCTASVEERIPRFKYGSGEGWL 128
Query: 96 NCNVSYTTFATPVRG---------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALV 146
S AT R +G H + S ++ ++L AI L + T+ + V
Sbjct: 129 TAEYSMLPAATHERMPRESMKGKVKGRTH-EISRLVGRSLRAAIDLRELGENTIAIDCDV 187
Query: 147 LESGGSDLPVVISCASVALADA-----------GIMMYDLVASVSVSCLGKNLLIDPVLE 195
L++ G I+ A VALADA G + VA+VSV + ++ +D E
Sbjct: 188 LQADGGTRTASITGAYVALADAIAELKRRGVVTGNPLLPPVAAVSVGLIDGHVCLDLPYE 247
Query: 196 EESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAK 242
E+S D + + SR E ++ TGE ST E + LDA+ K
Sbjct: 248 EDSRADVDMNVIMTESR-EFVEIQGTGEHST-FTREQLNQLLDAAEK 292
>gi|302406703|ref|XP_003001187.1| 3' exoribonuclease family protein [Verticillium albo-atrum
VaMs.102]
gi|261359694|gb|EEY22122.1| 3' exoribonuclease family protein [Verticillium albo-atrum
VaMs.102]
Length = 251
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 71/148 (47%), Gaps = 24/148 (16%)
Query: 20 PTRKTRPPIFSGSDVDWLRPDSRGFHQCRPA------FFRTGAVNSASGSAYAEF----- 68
P+ T P++ ++D R SR RPA F +TG +ASGSAYAE
Sbjct: 30 PSGATHAPVYQ-DELDASRNSSR----VRPANTMRNLFLKTGIAPAASGSAYAEIEAPAG 84
Query: 69 -----GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG---QGSDHKDFSS 120
K+I +V GPR ++ +S L+ +V Y FAT R + + +D S
Sbjct: 85 VSDTHAGMKLICTVHGPRALPRSAPFSPYLVLSTHVKYAPFATRQRRGYLRDASERDLSV 144
Query: 121 MLHKALEGAIILETFPKTTVDVFALVLE 148
L AL G +I E +PK+ VDV +LE
Sbjct: 145 HLETALRGVVIGERWPKSGVDVTVTILE 172
>gi|443919506|gb|ELU39651.1| exosome component 4 [Rhizoctonia solani AG-1 IA]
Length = 296
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 95/217 (43%), Gaps = 16/217 (7%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLN 96
R D R + R +A GSA G T V V VFGPRE+K ++ + +N
Sbjct: 13 RADGRKARELRSITIELSPHPTADGSATVSHGLTTVNVCVFGPREAKNRSQTMHDKALIN 72
Query: 97 CNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPV 156
+S G G++ +L+ + F + VL+ G L
Sbjct: 73 VEISEAPG-----GVGTN---------VSLKADPRICCFYSRNIRARRPVLQQDGGVLQT 118
Query: 157 VISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVT 216
I+ A++AL DAGI + D V + + +C+ L+D EES +L +A +P VT
Sbjct: 119 AINAATLALIDAGIALTDYVCACTAACIDTTGLLDLTNTEES-DLPNLTLAVLPRSKRVT 177
Query: 217 QLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
+T+ F++ +L L A L + MR+ ++E
Sbjct: 178 LVTMETRLHVERFDQIFKLALLAGDILHERMRAAIRE 214
>gi|408395559|gb|EKJ74738.1| hypothetical protein FPSE_05073 [Fusarium pseudograminearum CS3096]
Length = 266
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 76/150 (50%), Gaps = 8/150 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS----NI 92
LR D R +++ R + ++A GS+Y E G+TKV+ V GP E ++ ++
Sbjct: 13 LRVDGRRWNELRRLHAQIRTQDAADGSSYLEMGHTKVMCVVTGPSEQQQRRGGQQAGRDM 72
Query: 93 GRLNCNVSYTTFATPVRGQ-GSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+N NV F++ R + G + K + + + AL + FP +++ + VL
Sbjct: 73 AAINVNVVVAGFSSVDRKKRGRNDKRIQEIETTIANALSSNLHTHLFPNSSISISLHVLS 132
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVAS 178
GS L +I+ ++AL DAGI M D +A+
Sbjct: 133 QDGSLLAALINATTLALIDAGIPMSDYIAA 162
>gi|356554181|ref|XP_003545427.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Glycine max]
Length = 237
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 73/164 (44%), Gaps = 10/164 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGA--VNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
RPDS+ +Q RP ++ + GSA TKV+ +V+GP+ K
Sbjct: 5 RPDSQTPNQLRPLACSCSCSILHRSHGSASWAQRETKVLAAVYGPKAGTKKNENPK---- 60
Query: 96 NCNVSYTTFATPVRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDL 154
S P GQ G K++ +L + LE I +P TT V ++ G L
Sbjct: 61 --KASIKVIWKPKTGQIGKVEKEYEMILKRTLESICIRTIYPNTTTLVIVQIVHDDGVLL 118
Query: 155 PVVISCASVALADAGIMMYDLVASVSVSCLGKN-LLIDPVLEEE 197
P I+ A VAL DA I + LV ++ S +++DP ++E
Sbjct: 119 PCAINAACVALVDARIPLKHLVVAICCSITDSGCIILDPTKDQE 162
>gi|357117089|ref|XP_003560307.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Brachypodium
distachyon]
Length = 238
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 94/239 (39%), Gaps = 26/239 (10%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R +Q RP ++ A GSA G+T V+ +V+GPR + G
Sbjct: 5 RGDGRNANQLRPFTCARNPLDRAHGSARWSQGDTVVLAAVYGPRPGTRK------GENPE 58
Query: 98 NVSYTTFATPVRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPV 156
S P GQ G K + L + L+ +L P TT V V+ GS LP
Sbjct: 59 KASIEVVWKPKTGQSGKQEKGYEMTLKRTLQSICLLTVHPNTTTSVILQVMGDDGSLLPC 118
Query: 157 VISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS----- 211
I+ + AL AGI + L ++ LG +I + E + S P+
Sbjct: 119 AINASCAALVFAGIPLKHLAVAIGCGVLGNGAVILDTSKAEEQELKSFAHLVFPNSRKSV 178
Query: 212 -------------RYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASD 257
R +T +T G S + ++ L AS+++ MR+ L++ D
Sbjct: 179 ESKESQQKDEHSERGLLTSIT-HGVMSEDEYFSCIERGLAASSRISDFMRTTLQKQTPD 236
>gi|46135695|ref|XP_389539.1| hypothetical protein FG09363.1 [Gibberella zeae PH-1]
Length = 238
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 76/150 (50%), Gaps = 8/150 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS----NI 92
LR D R +++ R + ++A GS+Y E G+TKV+ V GP E ++ ++
Sbjct: 13 LRVDGRRWNELRRLHAQIRTQDAADGSSYLEMGHTKVMCVVTGPSEQQQRRGGQQAGRDM 72
Query: 93 GRLNCNVSYTTFATPVRGQ-GSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+N NV F++ R + G + K + + + AL + FP +++ + VL
Sbjct: 73 AAINVNVVVAGFSSVDRKKRGRNDKRIQEIETTIANALSSNLHTHLFPNSSISISLHVLS 132
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVAS 178
GS L +I+ ++AL DAGI M D +A+
Sbjct: 133 QDGSLLAALINATTLALIDAGIPMSDYIAA 162
>gi|443703429|gb|ELU00980.1| hypothetical protein CAPTEDRAFT_140943 [Capitella teleta]
Length = 158
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 60/123 (48%), Gaps = 11/123 (8%)
Query: 30 SGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAM 87
G VD +P+ QCR G + A GSAY E GNTKV+ +V+GP E + K+
Sbjct: 10 QGFRVDGRKPNELRRIQCR-----MGVFSQADGSAYIEQGNTKVLAAVYGPHEVRGSKSK 64
Query: 88 MYSNIGRLNCNVSYTTFATPVRGQ--GSDHKDFSSMLH--KALEGAIILETFPKTTVDVF 143
+ +NC S F+T R + D K LH + E AI+ +P++ +D+F
Sbjct: 65 AIHDQALINCQYSMAVFSTGERRRRPRGDKKSVEMTLHLKQTFEAAILTHLYPRSQIDIF 124
Query: 144 ALV 146
V
Sbjct: 125 IEV 127
>gi|390344519|ref|XP_785829.2| PREDICTED: exosome complex component RRP41-like, partial
[Strongylocentrotus purpuratus]
Length = 194
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 6/167 (3%)
Query: 95 LNCNVSYTTFATPVRG---QGSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+NC S TF+T R QG D K + S L + E I +P++ +D+F +L++
Sbjct: 20 INCQYSMATFSTNERKNRPQG-DRKSTEMSLHLQRTFEATIQTHLYPRSQIDIFVQILQA 78
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACM 209
G + ++ A++A+ +AGI M D V + S + L D EES + +A +
Sbjct: 79 DGGNYCACVNAATLAIINAGIPMKDYVCACSSGYVNNTPLTDVSYLEESQGGPVVTVAML 138
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAAS 256
P ++ + H + +++ + +M + +KE S
Sbjct: 139 PKSEQIALFKMDNRLHVDHLEQVLEVASKGCKDMYAVMNAAVKEHVS 185
>gi|237785978|ref|YP_002906683.1| ribonuclease PH [Corynebacterium kroppenstedtii DSM 44385]
gi|259494118|sp|C4LJY5.1|RNPH_CORK4 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|237758890|gb|ACR18140.1| ribonuclease PH [Corynebacterium kroppenstedtii DSM 44385]
Length = 254
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 109/242 (45%), Gaps = 23/242 (9%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
D++R D R + RP G + +GS EFGNT+V+ + + S G
Sbjct: 3 DFVRADGRALDEMRPVRIVRGFTTNPAGSVLVEFGNTRVMCTASVEDRVPRFKKDSGEGW 62
Query: 95 LNCNVSYTTFATP-------VRG--QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFAL 145
L S AT +RG +G H + S ++ ++L AI L+ + T+ +
Sbjct: 63 LTAEYSMLPSATAERMPRESMRGKVKGRTH-EISRLVGRSLRAAIDLKALGENTIALDCD 121
Query: 146 VLESGGSDLPVVISCASVALADA-------GIMMYDL----VASVSVSCLGKNLLIDPVL 194
VL++ G I+ A VALADA G++ + VA+VSV + ++ +D
Sbjct: 122 VLQADGGTRTASITGAYVALADALTYLEAEGLVSQNALLPPVAAVSVGLIDGHVCLDLPY 181
Query: 195 EEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEA 254
EE+S + + + M E ++ TGE ST + MQ +DA+ K + KEA
Sbjct: 182 EEDSRAEVDMNV-VMTESGEFVEIQGTGEHSTFSREQLMQF-MDAAEKGCSELIRAQKEA 239
Query: 255 AS 256
S
Sbjct: 240 LS 241
>gi|296810936|ref|XP_002845806.1| exosome complex exonuclease RRP41 [Arthroderma otae CBS 113480]
gi|238843194|gb|EEQ32856.1| exosome complex exonuclease RRP41 [Arthroderma otae CBS 113480]
Length = 298
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 95/212 (44%), Gaps = 20/212 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR-L 95
LR D R +++ R + ++SGS+Y GNT V+ +V GP E K++ G +
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTTVLCTVHGPAEGKRSETAGATGAVI 73
Query: 96 NCNVSYTTFATPVRGQGS-------DHK---DFSSMLHKALEGAIILETFPKTTVDVFAL 145
+ V+ FA R + S D + + ++++ A + I +P++T+ +
Sbjct: 74 SVVVNLAGFANVDRKKKSAAGGGGGDRQATTELANLIRDAFQPHIHAHLYPRSTISIHVS 133
Query: 146 VLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGS-- 203
VL S GS ++ ++AL DAGI M L+ + +V G+ P + ES Q G
Sbjct: 134 VLSSDGSLFAACLNACTLALVDAGIPMPGLLCACTVGMSGR--ASTPAVTAESAQMGGVN 191
Query: 204 -----LMIACMPSRYEVTQLTVTGEWSTPHFN 230
L+ P E+ +TV P N
Sbjct: 192 ETLDPLLDISAPEEVELPYMTVANTNPMPDIN 223
>gi|383852760|ref|XP_003701893.1| PREDICTED: exosome complex component RRP46-like [Megachile
rotundata]
Length = 220
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 98/215 (45%), Gaps = 15/215 (6%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLNCNVSYTTFAT 106
RP ++ GSA G+T VI V+GP E+K + M+Y + VSYT
Sbjct: 13 RPINCEMNQLSMPDGSAMLMQGDTAVIAGVYGPVEAKPQKMIYD---KAFVEVSYT---- 65
Query: 107 PVRGQGSDHKDFSSM-LHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVAL 165
P++G + M + + E AII+ P T + + LE G L +I+ A +AL
Sbjct: 66 PIKGPAKVDDRMTEMYIKETCETAIIVTFHPATAICINIQELEDSGGLLACIINAACLAL 125
Query: 166 ADAGIMMYDLVASVSVSCLGK----NLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVT 221
+A I M +A +VSC+ + N+++DP + A + +V
Sbjct: 126 INAAIPMKFTIA--AVSCMIEESTDNIILDPDNTQLEDARAEFTYAFDSMKKDVICCHTV 183
Query: 222 GEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAAS 256
G+++ F E + C AS ++ R+ +K+ A+
Sbjct: 184 GQFTEAEFFETIDKCRQASQRIFDFYRNLVKKYAN 218
>gi|307104174|gb|EFN52429.1| hypothetical protein CHLNCDRAFT_12102, partial [Chlorella
variabilis]
Length = 241
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 97/223 (43%), Gaps = 6/223 (2%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIG 93
+ LR D R + R G ++SA GSA E GNT+V+ +VFGP+ +++
Sbjct: 6 ERLRLDGRRPKELRQLRAELGVLSSADGSALFEMGNTRVLAAVFGPKPVEQRSQEDERRA 65
Query: 94 RLNCNVSYTTFAT----PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ C + +F+T + + +E I+ E P++ +D++ VL++
Sbjct: 66 IVKCEYAMASFSTGERRRRGKADRRATEIGMAIRNTMEQTILTELLPRSQIDIYVQVLQA 125
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACM 209
G I+ A +A A A I M DLVAS + L L+D E+S + +A
Sbjct: 126 DGGTRCACINAACMAAAAAAIPMRDLVASCAAGYLESTALLDLNYMEDSGGGPDVAVAIH 185
Query: 210 PSRYE-VTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
+ + V L S F E ++L + + MR L
Sbjct: 186 ANHEDRVVLLQQDNRLSIETFEEVLELGVAGCRAVAAFMRQQL 228
>gi|355686798|gb|AER98190.1| exosome component 4 [Mustela putorius furo]
Length = 186
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 78/170 (45%), Gaps = 10/170 (5%)
Query: 95 LNCNVSYTTFATPVRGQGSDHKDFSS-----MLHKALEGAIILETFPKTTVDVFALVLES 149
+NC S TF+T R + H D S L + E AI+ + P++ +D++ VL++
Sbjct: 14 VNCQYSSATFSTGERKR-RPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQA 72
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACM 209
G ++ A++A+ DAG+ M D V + S + L D EE+ L +A +
Sbjct: 73 DGGTYAACVNAATLAVLDAGVPMRDFVCACSAGFVDSTALADLSHVEEAAGGPQLALALL 132
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLCL----DASAKLGKIMRSCLKEAA 255
P+ ++ L + H ++ D L +++R ++EA+
Sbjct: 133 PASGQIALLEMDARLHEDHLESVLEAAARAARDVHTLLDRVVRQHVREAS 182
>gi|384499406|gb|EIE89897.1| hypothetical protein RO3G_14608 [Rhizopus delemar RA 99-880]
Length = 135
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 5/122 (4%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMM-YSNIG 93
+ LR D R ++ R +T + A GSAY E GNTK + +V+GPRE + M S+
Sbjct: 10 EGLRVDGRRANELRKITAKTSVFSQADGSAYIEQGNTKCLAAVYGPREVRHRMQALSDRA 69
Query: 94 RLNCNVSYTTFATPVRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+N + F+T R + S + + ++ + + E ++ FP++ +D++ V ++
Sbjct: 70 IINVEFNIAPFSTSERKKRSKNDKRSLEVAAFIRQTFEPVVLTTQFPRSQIDIYLQVFQN 129
Query: 150 GG 151
G
Sbjct: 130 DG 131
>gi|452825155|gb|EME32153.1| exosome complex component RRP46 [Galdieria sulphuraria]
Length = 217
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 80/162 (49%), Gaps = 8/162 (4%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R ++ R G + A GS E G T+V+ +V+GP E++ + R
Sbjct: 9 RRDGRKAYEIRGFRCELGYLERADGSCRLEQGRTQVVAAVYGPLEARGRNELPD--RTFV 66
Query: 98 NVSYTTFATPVRGQGSDHKDFSSM-LHKALEGAIILETFPKTTVDVFALVLESGGSDLPV 156
+VS P +G +D+ L + + I E P++ V + ++E+ GS +
Sbjct: 67 DVS----IRPFQGYTTDYLRLRERELKEIFDATIATEIQPRSCVTIVIQIIENDGSLMAA 122
Query: 157 VISCASVALADAGIMMYDLVASVSVSCLGKN-LLIDPVLEEE 197
VI+ ++L AGI + L AS +VS GK+ +L+DP L EE
Sbjct: 123 VINACMLSLLSAGIPCHWLAASCTVSYRGKDGVLLDPTLVEE 164
>gi|339259380|ref|XP_003368936.1| proline synthetase [Trichinella spiralis]
gi|316963953|gb|EFV49297.1| proline synthetase [Trichinella spiralis]
Length = 249
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 13/115 (11%)
Query: 47 CRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKA------MMYSNIGRLNCNVS 100
C + R V S GSAY E TK++ +V GPRE+ K+ M+ +N G+L +V
Sbjct: 131 CGSSSVRMNCVESFRGSAYIEMNKTKILCTVIGPREAHKSSEDSMGMLLANCGKLTVSVR 190
Query: 101 YTTFATPVRGQG-------SDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ FA R Q S+ ++ ++++ +A + +++E +PK + + +L+
Sbjct: 191 FAPFAKTPRLQRRRKEVALSEEQNLATLIQQAFDSVVLVERYPKAEIVLIISILQ 245
>gi|121716694|ref|XP_001275883.1| 3' exoribonuclease family protein [Aspergillus clavatus NRRL 1]
gi|119404040|gb|EAW14457.1| 3' exoribonuclease family protein [Aspergillus clavatus NRRL 1]
Length = 319
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 106/260 (40%), Gaps = 56/260 (21%)
Query: 20 PTRKTRPPIFSGS----DVDWLRPD-SRGFHQCRPAFFRTGAVNSASGSAYAEF------ 68
P TRP +F+ S RP R ++ R F +TG + SASGSAY EF
Sbjct: 10 PPSGTRPAVFASSLKTTGAAPTRPQRQRKPNELRKIFIKTGLIPSASGSAYLEFEPSASL 69
Query: 69 --------------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG---Q 111
K+ +V GP+ ++ +S L +V Y FA R +
Sbjct: 70 AAARSSPQSLIPPSSALKLACTVHGPKPLPRSATFSPNLVLTTHVKYAPFAARRRKGHIR 129
Query: 112 GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES----------GGSDLP-----V 156
S +D L AL GAII E +PK+ +D+ +LE+ D P V
Sbjct: 130 DSSERDLGVHLETALRGAIIAERWPKSGLDITITILEAEDDRWWGDAPDSHDAPWGMMNV 189
Query: 157 VISCASVALADAG---IMMYDLVAS------VSVSCLGKNLLIDPVLEEESYQDGSLMIA 207
+ C + A A I DLVA S G +L+ + + S++ A
Sbjct: 190 LAGCITAASAAIADARIDCLDLVAGGVAALVSDESAEGARSTPQLMLDTDPAEHRSILSA 249
Query: 208 C----MPSRYEVTQLTVTGE 223
C MPSR E+T+L + G+
Sbjct: 250 CVVAYMPSRDEITELWLKGD 269
>gi|224001004|ref|XP_002290174.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973596|gb|EED91926.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]
Length = 172
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 19/164 (11%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSA------------SGSAYAEFGNTKVIVSVFGPRES 83
LR D R H+ R GA+ S SGSA G T+V+ V GP ++
Sbjct: 7 HLRSDGRRPHEIRHMSCHLGALPSTTACGSALPTSACSGSALVSMGLTQVLCVVRGPSDA 66
Query: 84 -KKAMMYSNIGRLNCNVSYTTFATP----VRGQGSDHK--DFSSMLHKALEGAIILETFP 136
++ + L + + F+ P V SD + + S +L AL +I+L +P
Sbjct: 67 GRRTEELPDRATLEVTMRTSPFSPPGDRRVTNPTSDRRLIEQSHLLQTALSASILLHLYP 126
Query: 137 KTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVS 180
K+ + V +VL G L I+ A++AL DAGI + D+V + S
Sbjct: 127 KSKISVTVMVLADDGGRLEAAINAATLALIDAGIPLKDMVCACS 170
>gi|403169909|ref|XP_003329338.2| hypothetical protein PGTG_10390 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168474|gb|EFP84919.2| hypothetical protein PGTG_10390 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 291
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 102/232 (43%), Gaps = 15/232 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R RP + G ++ A+GS Y E GN+KVI +V+GP+ S++ L
Sbjct: 61 RADGRIHSDSRPICIKVGVISQANGSCYIESGNSKVICAVYGPKPRSSLSNSSSLSPLVI 120
Query: 98 NVSYTTFA------TPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE--S 149
++ + F P G S + +AL + +L + V+V VLE S
Sbjct: 121 SLRFAPFCMAGGRMAPT-ALGGVETTVSQLTQQALMPS-LLPMSDSSIVEVHINVLEWDS 178
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACM 209
S P V++ +S+ALA AGI LV +++ L K L +DP E +A +
Sbjct: 179 PLSPGPCVLA-SSIALASAGIPTVGLVIPSTLA-LSKELYLDPTATEAESASAIFDLASI 236
Query: 210 PSRYEVTQLTV--TGEW-STPHFNEAMQLCLDASAKLGKIMRSCLKEAASDE 258
P+ VT + T +W S P N+ CLD +++ A D
Sbjct: 237 PAMGTVTHVGFRSTTDWKSAPIGNDTFDRCLDLCKSNAELIHGLAAAALKDH 288
>gi|193652700|ref|XP_001948203.1| PREDICTED: exosome complex exonuclease RRP46-like [Acyrthosiphon
pisum]
Length = 211
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 104/222 (46%), Gaps = 22/222 (9%)
Query: 41 SRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKA-MMYSNIGRLNCNV 99
S F +C+ F + + GSAY G + V VSV GP E K + MY R +V
Sbjct: 2 SEEFLKCQLGF-----LGNTEGSAYLSQGKSTVSVSVVGPFEPKASKCMYD---RATVDV 53
Query: 100 SYTTFATPVRGQGS---DHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPV 156
++ R GS K ++ E A+++E +P+TT+ V ++ G+ L
Sbjct: 54 TFR------RKTGSITVHDKMLEGIMQSTCEKALVVEQYPRTTIVVTVQEMQDRGNLLST 107
Query: 157 VISCASVALADAGIMMYDLVASVSVSCLGKNLLI---DPVLEEESYQDGSLMIACMPSRY 213
++ + + L ++GI M+ L A+VS + K +I D S +L+ A +R
Sbjct: 108 CLNASCMGLMNSGIAMHHLYAAVSCAVTEKEEIILNPDETQINSSVAYLTLVFANTETRC 167
Query: 214 EVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAA 255
+T T TGE+S + + M C AS ++ + +K+++
Sbjct: 168 LLTSHT-TGEFSQKTYMDCMDKCYAASKEVFNFYQKVIKKSS 208
>gi|290992775|ref|XP_002679009.1| predicted protein [Naegleria gruberi]
gi|284092624|gb|EFC46265.1| predicted protein [Naegleria gruberi]
Length = 280
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 75/165 (45%), Gaps = 9/165 (5%)
Query: 37 LRPDSRGF-HQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
LR D R +Q R G + A GS GNT VI SV GP S K +
Sbjct: 6 LRRDQRKTSNQLRDMQVELGVLGKADGSVKFSQGNTTVICSVCGPESSMKE-------KG 58
Query: 96 NCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLP 155
+ + F + + K++ ++ + LE I+ +P+T + + V++ G L
Sbjct: 59 DQAIIDVMFQPRDKKASEEEKEYELIIRQTLENVILTNIYPRTVITISIQVVQYDGCLLS 118
Query: 156 VVISCASVALADAGIMMYDLVASVSVSCLGK-NLLIDPVLEEESY 199
++ AS+AL DAG+ M + S S S L + L+DP E+ +
Sbjct: 119 ASLNAASLALLDAGVAMKTTLVSSSCSYLNSGDCLLDPTRIEQDF 163
>gi|353234637|emb|CCA66660.1| probable exosome complex exonuclease rrp41 [Piriformospora indica
DSM 11827]
Length = 277
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 88/203 (43%), Gaps = 9/203 (4%)
Query: 58 NSASGSAYAEFGNTKVIVSVFGPRES--KKAMMYSNIGRLNCNVSYTTFATPVRGQGSDH 115
N+ GSA G T V VFGPRE ++ ++ +L+ V+ F+ + G+
Sbjct: 51 NAPDGSAIVGHGLTVVSARVFGPREPLLRREAIHDR-AKLSVQVAMLPFSGGMAGRRRGR 109
Query: 116 K-----DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGI 170
+ + + E + +P++ +D+ + + G L I+ ++AL DAG+
Sbjct: 110 GDKRLLELGAAIESTFESVVQTGLYPRSQIDIVVEIHQQDGGTLQAAINSVTLALTDAGV 169
Query: 171 MMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFN 230
MYD V +VS +L+D EE+ L +A MP +VT L + F
Sbjct: 170 AMYDQVVAVSAGLHSTAVLLDLTHHEENDMP-HLTVAVMPRSGKVTLLNMEARLHVTRFE 228
Query: 231 EAMQLCLDASAKLGKIMRSCLKE 253
++ +A + M S + +
Sbjct: 229 AVFKIACEAVTVIRDEMNSVISK 251
>gi|148697599|gb|EDL29546.1| exosome component 4, isoform CRA_c [Mus musculus]
Length = 211
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 79/170 (46%), Gaps = 10/170 (5%)
Query: 95 LNCNVSYTTFATPVRGQGSDHKDFSS-----MLHKALEGAIILETFPKTTVDVFALVLES 149
+NC S TF+T R + H D S L + E AI+ + P++ +D++ VL++
Sbjct: 38 VNCQYSSATFSTGERKR-RPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQA 96
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACM 209
G ++ A++A+ DAGI M D V + S + L D EE+ L +A +
Sbjct: 97 DGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALL 156
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAK----LGKIMRSCLKEAA 255
P+ ++ L + H + ++ A+ L ++R ++EA+
Sbjct: 157 PASGQIALLEMDSRLHEDHLEQVLEAAAQAARGVHTLLDLVVRQHVQEAS 206
>gi|242032199|ref|XP_002463494.1| hypothetical protein SORBIDRAFT_01g000760 [Sorghum bicolor]
gi|241917348|gb|EER90492.1| hypothetical protein SORBIDRAFT_01g000760 [Sorghum bicolor]
Length = 239
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 92/239 (38%), Gaps = 24/239 (10%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R +Q RP ++ A GSA G+T V+ +V+GP+ + G
Sbjct: 6 RADGRNPNQLRPFSCTGNPLHRAHGSARWAQGDTVVLAAVYGPKPGTRK------GENPE 59
Query: 98 NVSYTTFATPVRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPV 156
S P GQ G +++ L + L+ +L P TT V V+ GS LP
Sbjct: 60 KASIEVVWKPKTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQVVGDDGSLLPC 119
Query: 157 VISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP------ 210
I+ + ALA AGI M L ++ + +I E Q S P
Sbjct: 120 AINASCAALAFAGIPMKHLAVAICCGVMDNGAVILDTSTAEEQQAKSFAHLVFPNSRKSV 179
Query: 211 -----------SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDE 258
S + G S ++ ++ + AS+K+ MR L++ AS +
Sbjct: 180 DSKDPMQKDEESERGLISCITHGTMSEDNYFNCIERGIAASSKISDFMRKTLQKEASGD 238
>gi|66356472|ref|XP_625414.1| archeo-eukaryotic exosomal RNAse [Cryptosporidium parvum Iowa II]
gi|46226443|gb|EAK87443.1| archeo-eukaryotic exosomal RNAse [Cryptosporidium parvum Iowa II]
Length = 351
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 76/152 (50%), Gaps = 6/152 (3%)
Query: 62 GSAYAEFGNTKVIVSVFGPRESKKAMMYSNIG---RLNCNVSYTTFATPVRGQGSDHKDF 118
G+ Y E G K+IVS+ GP + Y+N ++NCN + F++ R + + F
Sbjct: 126 GNVYFEQGQNKLIVSIVGPVPISGNINYTNNNSGVQINCNFRVSPFSSQDRRKRGKNDRF 185
Query: 119 ---SSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDL 175
S ++ ++I + + K+ + + ++LE GS I+ S+ALA +GI M DL
Sbjct: 186 CIESGLIISRTFSSVICDQYSKSQIIINIIILEGDGSVRSAAINATSIALAISGISMKDL 245
Query: 176 VASVSVSCLGKNLLIDPVLEEESYQDGSLMIA 207
+ S + GK +L D E G+L++A
Sbjct: 246 IVSATCGLYGKQVLYDLTQSEMESLKGTLLMA 277
>gi|262404946|ref|ZP_06081498.1| ribonuclease PH [Vibrio sp. RC586]
gi|262348785|gb|EEY97926.1| ribonuclease PH [Vibrio sp. RC586]
Length = 238
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 99/227 (43%), Gaps = 22/227 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RPD+R Q RP A GS EFGNTKV+ + PR K K +
Sbjct: 1 MRPDNRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60
Query: 90 SNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L T G QG + ++ ++L + LE + + V V++
Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMSEIMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA-------GIM----MYDLVASVSVSCLGKNLLIDPVLEEE 197
+ G I+ ASVALADA G + M VA+VSV LG+N+L D E+
Sbjct: 121 ADGGTRTASITGASVALADAFAHLMAKGQLKKNPMKGHVAAVSVGILGENVLCDLEYVED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLG 244
S D + + M ++ ++ T E P +E + L L A AK G
Sbjct: 181 SAADTDMNV-VMTEEGKMIEIQGTAE-GEPFSHEQL-LELLAVAKKG 224
>gi|218194134|gb|EEC76561.1| hypothetical protein OsI_14380 [Oryza sativa Indica Group]
Length = 238
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 95/237 (40%), Gaps = 26/237 (10%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R +Q RP ++ A GSA G+T V+ +V+GP+ + G
Sbjct: 5 RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRK------GENPE 58
Query: 98 NVSYTTFATPVRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPV 156
S P+ GQ G K++ L + L+ +L P TT V V+ + GS LP
Sbjct: 59 KASIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPC 118
Query: 157 VISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS----- 211
I+ AL AGI + L ++ L +I + E Q S P+
Sbjct: 119 AINACCAALVFAGIPLKHLAVAIGCGVLEDGEVILDTNKAEEQQLKSFAHLVFPNSRKSA 178
Query: 212 -------------RYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAA 255
R +T +T G S + ++ L AS+++ MR+ L++ A
Sbjct: 179 SSKEPNQKEEDSERGLITSIT-HGVMSEEDYFSCIERGLAASSRISHFMRTTLQKQA 234
>gi|115456671|ref|NP_001051936.1| Os03g0854200 [Oryza sativa Japonica Group]
gi|75243278|sp|Q84T68.2|EXOS5_ORYSJ RecName: Full=Exosome complex exonuclease RRP46 homolog; AltName:
Full=Exosome component 5; AltName: Full=Ribosomal
RNA-processing protein 46; Short=oRrp46
gi|57222448|gb|AAO66540.2| putative exosome component [Oryza sativa Japonica Group]
gi|108712165|gb|ABF99960.1| 3' exoribonuclease family, domain 1 containing protein, expressed
[Oryza sativa Japonica Group]
gi|113550407|dbj|BAF13850.1| Os03g0854200 [Oryza sativa Japonica Group]
gi|215697262|dbj|BAG91256.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 238
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 95/237 (40%), Gaps = 26/237 (10%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R +Q RP ++ A GSA G+T V+ +V+GP+ + G
Sbjct: 5 RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRK------GENPE 58
Query: 98 NVSYTTFATPVRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPV 156
S P+ GQ G K++ L + L+ +L P TT V V+ + GS LP
Sbjct: 59 KASIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPC 118
Query: 157 VISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS----- 211
I+ AL AGI + L ++ L +I + E Q S P+
Sbjct: 119 AINACCAALVFAGIPLKHLAVAIGCGVLEDGEVILDTNKAEEQQLKSFAHLVFPNSRKSA 178
Query: 212 -------------RYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAA 255
R +T +T G S + ++ L AS+++ MR+ L++ A
Sbjct: 179 SSKEPNQKEEDSERGLITSIT-HGVMSEEDYFSCIERGLAASSRISDFMRTTLQKQA 234
>gi|156086228|ref|XP_001610523.1| exosome complex exonuclease rrp41 [Babesia bovis T2Bo]
gi|154797776|gb|EDO06955.1| exosome complex exonuclease rrp41, putative [Babesia bovis]
Length = 259
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 103/248 (41%), Gaps = 30/248 (12%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGA-----VNSASGSAYAEFGNTKVIVSVFGPRESKKAMM 88
++ LR D R + R G + + G A G TKV + GP
Sbjct: 9 LEGLRIDGRRPSEVRHIDILCGPECGVDIINYDGVAQVTQGLTKVQAFINGP-------- 60
Query: 89 YSNIGRLNCNVSYTTFATPV------------RGQGSDHKDFSSMLHKALEG----AIIL 132
++IGR + T +PV + G + D + + +A+ G II
Sbjct: 61 -TDIGRSKTKEGFETADSPVEIRCEVCIPSERKSMGHRNNDATVEISRAVVGTFEPVIIS 119
Query: 133 ETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDP 192
+ +T+ +F VLE+ G VI+ +AL DAGI M D++ + + L + LLIDP
Sbjct: 120 HLYKNSTIHIFVNVLEADGGVKATVINAVLIALIDAGIAMKDIIVACTAVMLNETLLIDP 179
Query: 193 VLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
E + L +A S E+ + + ++ + E ++ + S + + ++ LK
Sbjct: 180 NQLEINASIMELTLALSVSNEELIHIDLRSKYPIKSYAEIIEKAIKGSERFAALAKAKLK 239
Query: 253 EAASDEQE 260
A + E
Sbjct: 240 GYAREHLE 247
>gi|284793943|pdb|3HKM|A Chain A, Crystal Structure Of Rice(Oryza Sativa) Rrp46
gi|284793944|pdb|3HKM|B Chain B, Crystal Structure Of Rice(Oryza Sativa) Rrp46
gi|284793945|pdb|3HKM|C Chain C, Crystal Structure Of Rice(Oryza Sativa) Rrp46
Length = 246
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 95/237 (40%), Gaps = 26/237 (10%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R +Q RP ++ A GSA G+T V+ +V+GP+ + G
Sbjct: 5 RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRK------GENPE 58
Query: 98 NVSYTTFATPVRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPV 156
S P+ GQ G K++ L + L+ +L P TT V V+ + GS LP
Sbjct: 59 KASIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPC 118
Query: 157 VISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS----- 211
I+ AL AGI + L ++ L +I + E Q S P+
Sbjct: 119 AINACCAALVFAGIPLKHLAVAIGCGVLEDGEVILDTNKAEEQQLKSFAHLVFPNSRKSA 178
Query: 212 -------------RYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAA 255
R +T +T G S + ++ L AS+++ MR+ L++ A
Sbjct: 179 SSKEPNQKEEDSERGLITSIT-HGVMSEEDYFSCIERGLAASSRISDFMRTTLQKQA 234
>gi|260774477|ref|ZP_05883391.1| ribonuclease PH [Vibrio metschnikovii CIP 69.14]
gi|260610604|gb|EEX35809.1| ribonuclease PH [Vibrio metschnikovii CIP 69.14]
Length = 238
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 99/227 (43%), Gaps = 22/227 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RP+ R Q RP A GS EFGNTKV+ V PR K K +
Sbjct: 1 MRPNDRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEETVPRWLKGQGKGWVT 60
Query: 90 SNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L T G QG + ++ ++L + L+ + + V V++
Sbjct: 61 AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLKAMGEIMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA-------GIM----MYDLVASVSVSCLGKNLLIDPVLEEE 197
+ G IS ASVA+ADA G + M VA+VSV LG+N+L D E+
Sbjct: 121 ADGGTRTAAISGASVAMADAFAHLVAKGKLKANPMKSHVAAVSVGILGENILCDLEYVED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLG 244
S D + + M ++ ++ T E P +E + L L ASA+ G
Sbjct: 181 SAADTDMNV-VMTEEGKMIEIQGTAE-GEPFSHEQL-LALLASAQKG 224
>gi|212543511|ref|XP_002151910.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Talaromyces marneffei ATCC 18224]
gi|210066817|gb|EEA20910.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Talaromyces marneffei ATCC 18224]
Length = 283
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 71/145 (48%), Gaps = 5/145 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R +++ R + ++SGS+Y GNT ++ +V GP E+ A + ++
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTSIMCTVHGPHETSGAGSSATEAVVD 73
Query: 97 CNVSYTTFA---TPVRGQGSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+V+ FA R GSD + S+ L A + + +P +T+ V VL S G
Sbjct: 74 VDVNIAGFAGVDRKRRAGGSDRQSTQLSTALKSAFQSHLHTSLYPHSTITVQVSVLSSDG 133
Query: 152 SDLPVVISCASVALADAGIMMYDLV 176
S I+ ++AL DAGI M L+
Sbjct: 134 SLFAAAINACTLALVDAGIPMPGLL 158
>gi|374851060|dbj|BAL54031.1| polynucleotide phosphorylase/polyadenylase [uncultured
planctomycete]
Length = 768
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 103/230 (44%), Gaps = 19/230 (8%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV----FGPRESKKAMMYSNIG 93
R D RG RP G + GSA G T+ +V+ + + + +
Sbjct: 331 RLDGRGPKDLRPISCEVGVLPRTHGSALFTRGETQALVTTTLGTVSDEQKVEGLAEEHTK 390
Query: 94 RLNCNVSYTTFAT----PVRGQGSDHKDFSSMLHKALEGAI-ILETFPKTTVDVFALVLE 148
+ + ++ F+ P+RG G ++ ++L+ + E FP T+ V + +LE
Sbjct: 391 KFMLDYNFPPFSVGEVRPIRGPGRREVGHGALAERSLKAVMPTPEEFP-YTIRVVSEILE 449
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKN----LLIDPVLEEESYQDGSL 204
S GS + A+++L DAG+ +Y VA +S+ + +N LL D + +E+ Y D
Sbjct: 450 SNGSSSMATVCGATLSLMDAGVPIYQPVAGISIGLVKENDRYVLLTDIMGDEDHYGDMDF 509
Query: 205 MIACMPSRYEVTQLTVTGEWSTPH---FNEAMQLCLDASAKLGKIMRSCL 251
+A + Y +T + + + + H E +Q +A ++ +IM L
Sbjct: 510 KVAG--TGYGITGIQLDLKIAGIHEQIIRETLQQAREARTRILQIMLQTL 557
>gi|341891925|gb|EGT47860.1| CBN-EXOS-4.2 protein [Caenorhabditis brenneri]
Length = 240
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 83/192 (43%), Gaps = 14/192 (7%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIG 93
++ + D R RP + G + GS YAEFGNT+V+ + GP G
Sbjct: 23 MEAIEMDKRSATTFRPLCVKCGVFGAQDGSGYAEFGNTRVLAQIIGPD-----------G 71
Query: 94 RLNCNVSYTTFATPVRGQGSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
+ ++G ++ + ++ + L + I + +P +++ VL G
Sbjct: 72 DGKWEEDHAKITVTLKGLENEKQIAEYRAELMSSASSVIFINKYPGKVIEIEVTVLSDDG 131
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSC-LGKNLLIDPVLEEESYQDGSLMIACMP 210
L +S ++ALA +GI L ASV V ++ + DP E + G + A +P
Sbjct: 132 GVLSAALSAVTLALAHSGIEHMGLTASVHVGMRANEDYITDPSTSESADTLGGVTFAFVP 191
Query: 211 SRYEVTQLTVTG 222
+ + T +++ G
Sbjct: 192 NLSQTTCVSLYG 203
>gi|397579612|gb|EJK51273.1| hypothetical protein THAOC_29565, partial [Thalassiosira oceanica]
Length = 340
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 71/135 (52%), Gaps = 9/135 (6%)
Query: 55 GAVNSA--SGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRLNCNVSYTTFATPVRGQ 111
GA+ SA SGSA G TKV+ S GP + ++++ + L V FA P +
Sbjct: 100 GALPSAGCSGSAMVTLGLTKVLCSSGGPCDATRRSEELPDRASLEVLVRAAPFAPPGDRR 159
Query: 112 G----SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVAL 165
+D + + S +L +AL +I+L FP++ + V +VL G L I+ A++AL
Sbjct: 160 NVNPTTDRRLVEASHLLQRALSASILLHLFPRSKISVTVMVLADDGGRLEASINAATLAL 219
Query: 166 ADAGIMMYDLVASVS 180
DAGI + D+V + S
Sbjct: 220 MDAGIPLRDMVCACS 234
>gi|380488106|emb|CCF37603.1| 3' exoribonuclease [Colletotrichum higginsianum]
Length = 266
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 77/149 (51%), Gaps = 7/149 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK---AMMYSNIG 93
LR D R +++ R + ++A GS+Y E G+TKV+ V GP E ++ A S
Sbjct: 13 LRVDGRRWNELRRLHAQIRTQDAADGSSYLEMGHTKVMCVVTGPTEPQRRGGAGGQSKEA 72
Query: 94 RLNCNVSYTTFATPVRGQ-GSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ N+ F++ R + G + K + + + KA+ + FP +++ + VL
Sbjct: 73 AVTVNLVVAGFSSVDRKKRGRNDKRTQELEATIAKAVSANLHTHLFPHSSISISLHVLSQ 132
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVAS 178
GS L +++ +++AL DAGI M D +A+
Sbjct: 133 DGSLLAALLNASTLALIDAGIPMTDYIAA 161
>gi|291226757|ref|XP_002733360.1| PREDICTED: exosome component 5-like, partial [Saccoglossus
kowalevskii]
Length = 198
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 82/177 (46%), Gaps = 8/177 (4%)
Query: 62 GSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSSM 121
GSA G+T VIV+V+GP E K++ + + L F V G K +
Sbjct: 28 GSATYCQGDTSVIVAVYGPAEVKQSKEFLDKATLE-----VIFKPKVGIPGCSEKFQERL 82
Query: 122 LHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASV-- 179
+ E ++ P++++++ V+ + GS L ++ +AL DAG+ M LVA+V
Sbjct: 83 IRNTCETIVLTALHPRSSINIIIQVMHNAGSLLSCCVNSTCMALLDAGLPMSCLVAAVTC 142
Query: 180 SVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLC 236
S+SC G ++++DP ++E L E+ G +S + ++ C
Sbjct: 143 SLSCDG-DIILDPTSQQEKEAKAILTFVFESRDNEIITSNTHGIYSIKQYYSCVEAC 198
>gi|407919986|gb|EKG13205.1| Exoribonuclease phosphorolytic domain 1 [Macrophomina phaseolina
MS6]
Length = 256
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 99/232 (42%), Gaps = 16/232 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK-----AMMYSN 91
LR D R +++ R + +A GS+Y E GNTKV+ +V GP E ++
Sbjct: 13 LRLDGRRWNELRRLQAQISTQAAADGSSYLEMGNTKVMCTVTGPYEGRRQGGAAGAQRDG 72
Query: 92 IGRLNCNVSYTTFA----TPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVL 147
++ + + F+ + L +A + + +P +T+ + +L
Sbjct: 73 EAKIEVEIGFAGFSGIERKRRGRGDKRTAEMQHTLVQAFASTLHTQRYPHSTISISLHIL 132
Query: 148 ESGGSDLPVVISCASVALADAGIMMYDLV----ASVSVSCLGKNLLIDPVLEEESYQDGS 203
GS L ++ A++AL DAGI M D + A + S + DP+L+ + ++
Sbjct: 133 SQDGSLLAACLNAATLALVDAGIPMSDYLVACTAGSTASYSANDEQADPLLDLNNLEEQE 192
Query: 204 ---LMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
L + C+ + E++ L + + + + +D ++ I+ ++
Sbjct: 193 LPFLTVGCLGQKEEISVLVMESKVQMTRLEAMLAVGVDGCKRVRDILDGVVR 244
>gi|375291476|ref|YP_005126016.1| ribonuclease PH [Corynebacterium diphtheriae 241]
gi|375293675|ref|YP_005128215.1| ribonuclease PH [Corynebacterium diphtheriae INCA 402]
gi|376246313|ref|YP_005136552.1| ribonuclease PH [Corynebacterium diphtheriae HC01]
gi|376251901|ref|YP_005138782.1| ribonuclease PH [Corynebacterium diphtheriae HC03]
gi|376257714|ref|YP_005145605.1| ribonuclease PH [Corynebacterium diphtheriae VA01]
gi|419861397|ref|ZP_14384033.1| ribonuclease PH [Corynebacterium diphtheriae bv. intermedius str.
NCTC 5011]
gi|371581147|gb|AEX44814.1| ribonuclease PH [Corynebacterium diphtheriae 241]
gi|371583347|gb|AEX47013.1| ribonuclease PH [Corynebacterium diphtheriae INCA 402]
gi|372108943|gb|AEX75004.1| ribonuclease PH [Corynebacterium diphtheriae HC01]
gi|372113405|gb|AEX79464.1| ribonuclease PH [Corynebacterium diphtheriae HC03]
gi|372120231|gb|AEX83965.1| ribonuclease PH [Corynebacterium diphtheriae VA01]
gi|387982126|gb|EIK55637.1| ribonuclease PH [Corynebacterium diphtheriae bv. intermedius str.
NCTC 5011]
Length = 241
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 105/228 (46%), Gaps = 24/228 (10%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGP---RESKKAM 87
D+ R D R Q R G ++ +GS EFGNT+V+ V + P R+S +
Sbjct: 3 DFSRADGRAVDQMRTVKITRGFTSNPAGSVLVEFGNTRVMCTASVELGVPRFKRDSGEGW 62
Query: 88 MYSNIGRLNCNVSYTTFATPVRG--QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFAL 145
+ + L + +RG +G H + S ++ ++L A+ L+ + T+++
Sbjct: 63 LTAEYAMLPAATAERNARESMRGKVKGRTH-EISRLIGRSLRAAVDLDELGENTINIDCD 121
Query: 146 VLESGGSDLPVVISCASVALADAGIMMYDL-----------VASVSVSCLGKNLLIDPVL 194
VL++ G I+ A VALADA ++ + VA+VSV + + +D
Sbjct: 122 VLQADGGTRTASITGAYVALADAIAVLKEQGVVPGNPLKAPVAAVSVGVIDGQVCLDLPY 181
Query: 195 EEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAK 242
EE+S D + + R+ ++ TGE +T +E + + LD + K
Sbjct: 182 EEDSRADVDMNVIMQGDRF--VEIQGTGEHNTFDRDE-LAVILDFAQK 226
>gi|302505236|ref|XP_003014839.1| hypothetical protein ARB_07400 [Arthroderma benhamiae CBS 112371]
gi|291178145|gb|EFE33936.1| hypothetical protein ARB_07400 [Arthroderma benhamiae CBS 112371]
Length = 293
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 96/224 (42%), Gaps = 52/224 (23%)
Query: 52 FRTGAVNSASGSAYAEF---------------GNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+TG + SASGSAY E + K+I SV GP+ ++ +S L+
Sbjct: 8 LKTGVIPSASGSAYFELHPSNSSSGGSLIPPSSSLKLICSVNGPKPLSRSTPFSPNLLLS 67
Query: 97 CNVSYTTFATPVRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES---- 149
+V + FA R + + +D L AL GAII + +PK+ +D+ ++LE
Sbjct: 68 AHVKFAPFANRRRRAHVRDMNERDLGVHLENALRGAIIGDRWPKSGLDITIMILEGEDDR 127
Query: 150 -----------GGSD-------LPVVISCASVALADAGIMMYDLVASV------------ 179
GSD L ++ AS A+ADA I DLVA
Sbjct: 128 WWGDMSTAETLTGSDGWGMMNVLAHCVTVASAAIADARIDCLDLVAGGVAAVVGTCSSGE 187
Query: 180 SVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGE 223
+ K +++DP E S ++ MPS E+T+L + G+
Sbjct: 188 GATSSTKTVVLDPDPSEHLNISSSCVVGYMPSLDEITELWLKGD 231
>gi|346971917|gb|EGY15369.1| exosome complex exonuclease RRP41 [Verticillium dahliae VdLs.17]
Length = 275
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 7/149 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK---AMMYSNIG 93
LR D R +++ R + ++A GS+Y E G+TKV+ V GP E ++ A S
Sbjct: 13 LRVDGRRWNELRRLQAQIRTQDAADGSSYLEIGHTKVMCVVTGPTEPQRRGPAGGQSKDA 72
Query: 94 RLNCNVSYTTFATPVRGQ-GSDHKDFSSM---LHKALEGAIILETFPKTTVDVFALVLES 149
+N ++ F++ R + G + K S + + KA + FP +++ + VL
Sbjct: 73 AVNVSIVVAGFSSVDRRKYGRNDKRISELEATVSKAFASTLHTHLFPHSSIYISLHVLSQ 132
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVAS 178
GS L +++ ++AL DAGI M D +A+
Sbjct: 133 DGSLLAALLNATTLALVDAGIPMTDYIAA 161
>gi|315051732|ref|XP_003175240.1| exosome complex exonuclease RRP41 [Arthroderma gypseum CBS 118893]
gi|311340555|gb|EFQ99757.1| exosome complex exonuclease RRP41 [Arthroderma gypseum CBS 118893]
Length = 278
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 11/147 (7%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR-L 95
LR D R +++ R + ++SGS+Y GNT V+ +V GP E K++ G +
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVI 73
Query: 96 NCNVSYTTFATPVRGQ-------GSDHK---DFSSMLHKALEGAIILETFPKTTVDVFAL 145
N V+ FA R + G D + + +++L A + I +P++T+ +
Sbjct: 74 NVVVNLAGFANVDRKKKSATGSGGGDRQATTELANLLRDAFQPHIHAHLYPRSTISIHVS 133
Query: 146 VLESGGSDLPVVISCASVALADAGIMM 172
VL S GS ++ ++AL DAGI M
Sbjct: 134 VLSSDGSLFAACLNACTLALVDAGIPM 160
>gi|342876785|gb|EGU78342.1| hypothetical protein FOXB_11157 [Fusarium oxysporum Fo5176]
Length = 268
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 92/198 (46%), Gaps = 15/198 (7%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS-----N 91
LR D R +++ R + ++A GS+Y E G+TKV+ V GP E + +
Sbjct: 13 LRVDGRRWNELRRLHAQIRTQDAADGSSYLEMGHTKVMCIVTGPSEQQVQRRGGQQAPRD 72
Query: 92 IGRLNCNVSYTTFATPVRGQ-GSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVL 147
+N NV F++ R + G + K + + + A + FP +++ + VL
Sbjct: 73 TAAINVNVVVAGFSSVDRKKRGRNDKRIQEIETTIANAFTSNLHTHLFPHSSITISLHVL 132
Query: 148 ESGGSDLPVVISCASVALADAGIMMYDLVA-----SVSVSCLGKNLLIDPVLEEESYQDG 202
GS L +++ ++AL DAGI M D +A S S G + DP+L+ + ++
Sbjct: 133 SQDGSLLAALLNATTLALIDAGIPMTDYIAACTAGSTSTYAAGDD-TADPLLDLNNQEEQ 191
Query: 203 SLMIACMPSRYEVTQLTV 220
L + ++ + Q+ V
Sbjct: 192 ELPFLTVATQGDTDQVAV 209
>gi|308481633|ref|XP_003103021.1| CRE-EXOS-4.2 protein [Caenorhabditis remanei]
gi|308260397|gb|EFP04350.1| CRE-EXOS-4.2 protein [Caenorhabditis remanei]
Length = 273
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 90/213 (42%), Gaps = 18/213 (8%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATP 107
RP + G + GS YAEFGNT+V+ + GP K +Y
Sbjct: 70 RPLCVKCGVFGAQDGSGYAEFGNTRVLAQITGPEGDGK-----------WEEAYAKVTIT 118
Query: 108 VRGQGSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVAL 165
++G ++ K + + + +L I + +P +D+ VL G L I+ ++AL
Sbjct: 119 LKGVENETKVAELRADMTSSLSAVIFVNKYPGKVIDIEVTVLSDDGGVLSTAITAVTLAL 178
Query: 166 ADAGIMMYDLVASVSVSCLGK-NLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTG-- 222
A +GI L AS V+ + + DP E G + A +P+ + T + + G
Sbjct: 179 AHSGIEHMGLTASAHVTLRQNGDYITDPSTSEAEDAIGGVTFAFVPNLGQTTCVNLYGRI 238
Query: 223 --EWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
+ ++P A Q + + K + + +KE
Sbjct: 239 PLKATSPLLEFARQRAIALVPAIHKAVVNSVKE 271
>gi|390370164|ref|XP_793149.3| PREDICTED: exosome complex component RRP46-like [Strongylocentrotus
purpuratus]
Length = 191
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 89/194 (45%), Gaps = 8/194 (4%)
Query: 65 YAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSSMLHK 124
+ G+T V+ +V+GP + K N ++ T+ + G K M+
Sbjct: 2 FVHVGDTSVMAAVYGPGDVK-----PNKALMDKATVTVTYKPKIGISGVREKALERMIRN 56
Query: 125 ALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCL 184
E ++ FP+++VD+ ++ G+ L I+ A +A+ +AGI M VA+ S +
Sbjct: 57 TCETVLLTTLFPRSSVDIIVQEIQDAGALLACSINAACLAMINAGIPMKCTVAA-SCCMM 115
Query: 185 GKN--LLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAK 242
GK+ L++DP E+ + L A S + + ++ G S +++ M +C A K
Sbjct: 116 GKDEELIMDPTKEQTKDAECVLTSAIDSSAHSLIASSMQGSCSVEQYHKLMSVCQKACDK 175
Query: 243 LGKIMRSCLKEAAS 256
+ + R ++ S
Sbjct: 176 VFEFYREAMERTLS 189
>gi|219130014|ref|XP_002185170.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403349|gb|EEC43302.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 140
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 72/146 (49%), Gaps = 8/146 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R RP G +++A GSA + G+T+V+ +V GP ++ + +++
Sbjct: 3 RADGRLASTLRPLSCELGTLHNADGSALWKSGSTQVLAAVHGPVAPRQPQHETQKAKISI 62
Query: 98 NVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVV 157
+ T + +++ + + KAL ++ E +P++ + + +L + GS L
Sbjct: 63 IIKSGTTVNTL------EREWEAFITKALTACLVTEQYPRSVIQIVLQILSADGSVLGAA 116
Query: 158 ISCASVALADAGIMMYDLVASVSVSC 183
++ A AL DAGI M V V+V+C
Sbjct: 117 LNGAVAALMDAGIAMK--VLPVAVTC 140
>gi|67526709|ref|XP_661416.1| hypothetical protein AN3812.2 [Aspergillus nidulans FGSC A4]
gi|40740830|gb|EAA60020.1| hypothetical protein AN3812.2 [Aspergillus nidulans FGSC A4]
gi|259481631|tpe|CBF75330.1| TPA: exosome complex endonuclease 1/ribosomal RNA processing
protein, putative (AFU_orthologue; AFUA_2G03740)
[Aspergillus nidulans FGSC A4]
Length = 265
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 82/177 (46%), Gaps = 18/177 (10%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK-----AMMYSN 91
LR D R +++ R + ++SGS+Y GNT ++ SV GP E ++ S+
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLAMGNTTILCSVHGPAEGRRGDATGGSAGSS 73
Query: 92 IGRLNCNVSYTTFAT---PVRGQGSDHKD--FSSMLHKALEGAIILETFPKTTVDVFALV 146
+ +V+ FA+ R GSD + +S L A + + +P +T+ + V
Sbjct: 74 GAVVEVDVNIAGFASVDRKRRAGGSDRQSGRIASTLRSAFQSHLHTYLYPHSTISIHVSV 133
Query: 147 LESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGK--------NLLIDPVLE 195
L S GS L ++ ++AL DAGI M L+ + G N +DP+L+
Sbjct: 134 LSSDGSVLAAAVNACTLALVDAGIPMPGLLCGCTAGMSGSASTPRDPMNDTLDPLLD 190
>gi|68490993|ref|XP_710691.1| potential exosome component Mtr3p [Candida albicans SC5314]
gi|46431926|gb|EAK91443.1| potential exosome component Mtr3p [Candida albicans SC5314]
Length = 293
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 113/257 (43%), Gaps = 62/257 (24%)
Query: 49 PAFF-RTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATP 107
P+FF + +++A+GSAY E NT + VS+FGPR + + I R + +V
Sbjct: 39 PSFFLKHSIIDNANGSAYLEINNTIIEVSIFGPRPIRGSF----IDRASVSVDCKFLPHI 94
Query: 108 VRGQGS------------------------------DHKDFSSMLHKALEGAIILETFPK 137
++ GS +HK SS L + ++ILE +PK
Sbjct: 95 IQPMGSIFNDTTTSGVGGGGGISSSNRGYRTGMNNIEHK-LSSYLETCVLSSLILEKYPK 153
Query: 138 TTVDVFALVL----ESGGSD-----LPVVISCASVALADAGIMMYDLVAS--VSVSCLGK 186
+T+D+ ++ E GG L + C S+AL D+GI M D+++S V ++ GK
Sbjct: 154 STIDIQVSIISIDKEIGGGHSLLWLLQWITCCCSLALVDSGIEMKDIISSGQVRLTKSGK 213
Query: 187 NLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEW----------STPHFNEA-MQL 235
++I ++ S +DG I + S + + G W NE+ M+
Sbjct: 214 -IIIGGNSDKTSTEDG---IDGLVSFMNLKNDEIVGIWFEGEGDDNNNEDSLLNESNMEK 269
Query: 236 CLDASAKLGKIMRSCLK 252
+ K+ KI+R+ L
Sbjct: 270 LIIECNKMSKIIRANLN 286
>gi|212535542|ref|XP_002147927.1| 3' exoribonuclease family protein [Talaromyces marneffei ATCC
18224]
gi|210070326|gb|EEA24416.1| 3' exoribonuclease family protein [Talaromyces marneffei ATCC
18224]
Length = 333
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 81/310 (26%), Positives = 123/310 (39%), Gaps = 73/310 (23%)
Query: 20 PTRKTRPPIFS-------GSDVDWLRPD-SRGFHQCRPAFFRTGAVNSASGSAYAEF--- 68
P TR P+++ G + RP +R + R F +TG + SASGS+Y E
Sbjct: 10 PQSGTRAPVYASLLRNAAGEAAE--RPQRARKPTELRKIFLKTGLIPSASGSSYLEIEPA 67
Query: 69 ---GNT-----------KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG---Q 111
NT K+ +V GPR ++ YS L +V Y FA R +
Sbjct: 68 RRPTNTPKSLIAPATSLKIACAVHGPRPLPRSANYSPNLLLTTHVKYAPFAHRRRKGHIR 127
Query: 112 GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE----------SGGSD-----LPV 156
+ +D L A+ GAII E +PK+ +DV VLE SG SD + V
Sbjct: 128 DASERDLGVHLETAIRGAIIAERWPKSALDVTITVLEAEDDRWWGDASGSSDASWGMMNV 187
Query: 157 VISCASVALADAGIMM---YDLVASVSVSCLGKN---------------LLIDPVLEEES 198
+ C + A A DLVA + + + L +DP E
Sbjct: 188 LAGCITAAAAAIADARIDCLDLVAGGVAALVADDQQEDKSTEGGVSPPRLFLDPDPSEHK 247
Query: 199 YQDGSLMIACMPSRYEVTQLTVTGEWS-----TPHFNEAM---QLCLDASAKLGKIMRSC 250
+ ++ +P R E+T++ + G+ S TP E M + +D + + RS
Sbjct: 248 NIVAACVVGYLPGRDEITEIWLKGDTSEVASTTP--GEKMSGHDVLIDGAIDAARAARSV 305
Query: 251 LKEAASDEQE 260
L A + E
Sbjct: 306 LAAAVKESGE 315
>gi|310798773|gb|EFQ33666.1| 3' exoribonuclease family protein [Glomerella graminicola M1.001]
Length = 266
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 76/149 (51%), Gaps = 7/149 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK---AMMYSNIG 93
LR D R +++ R + +A GS+Y E G+TKV+ V GP E ++ A +
Sbjct: 13 LRVDGRRWNELRRLHAQIRTQEAADGSSYLEMGHTKVMCVVTGPTEPQRRGGAGGQTKEA 72
Query: 94 RLNCNVSYTTFAT-PVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ N+ F++ R +G + K + + + KA+ + FP +++ + VL
Sbjct: 73 AVTVNLVVAGFSSVDRRKRGRNDKRTQELEATIAKAVSANLHTHLFPHSSISISLHVLSQ 132
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVAS 178
GS L +++ +++AL DAGI M D +A+
Sbjct: 133 DGSLLAALLNASTLALIDAGIPMTDYIAA 161
>gi|168045848|ref|XP_001775388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673333|gb|EDQ59858.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 256
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 99/235 (42%), Gaps = 23/235 (9%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R Q RP G + A GSA NT V+ +V+GP+ + AM N R
Sbjct: 19 RADGRSASQLRPLSLSRGLLTRAHGSATWSQENTTVLAAVYGPKPA--AMKKENAERAII 76
Query: 98 NVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVV 157
V + + GS KD ++ ++LE I+ P T + V V+ GS L
Sbjct: 77 EVVWRAKSGL---SGSYEKDAEVVVRRSLEYIILTALHPNTAISVILQVINDDGSLLACA 133
Query: 158 ISCASVALADAGIMMYDLVASVSVSCLGK-NLLIDPVLEEE-------SYQDGSLMIACM 209
++ A AL DAGI + L+++VS + +DP EE S+ S ++ +
Sbjct: 134 MNAACAALVDAGIPLNGLLSAVSCGVTHDGQVFLDPTKPEEQKCKAYVSFVFPSRRLSAV 193
Query: 210 PS----------RYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEA 254
P Y + G + ++ C A+AK+ + RS ++++
Sbjct: 194 PELPADVDGEPVEYGILTSVTRGAMEVEEYFSCVENCRAAAAKVSEFSRSSIEQS 248
>gi|224014598|ref|XP_002296961.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220968341|gb|EED86689.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 357
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 114/290 (39%), Gaps = 64/290 (22%)
Query: 32 SDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYS 90
S ++ R RG R ++ ++GS+ E G+TK+IVSV GPR + +
Sbjct: 68 SSINISRSSKRGPRTLRQLHLARSILSQSTGSSLVECGHTKLIVSVRGPRPANCGGLNGG 127
Query: 91 NIGRLNCNVSY--------------------------TTFATPVRGQGSDHKDFSSM--- 121
N G L C V Y +T A R S +D S++
Sbjct: 128 NGGGLICEVRYMPHIGIRMETLARHSLSHDFSKSSSSSTGARIPRDSLSTSQDTSNLSSG 187
Query: 122 ------------------LHKALEGAIIL-ETFPKTTVDVFALVLESGGSDLPVVISCAS 162
L +AL A++L + K ++VF VL+S G + AS
Sbjct: 188 GALCAPAAFLDESYLSHRLQEALAPAVVLMDNENKMCIEVFVQVLQSDGGVFGAAVMGAS 247
Query: 163 VALADAGIMMYDLVASVSVSCL--------GKN-------LLIDPVLEEESYQDGSLMIA 207
+AL DAG+ M D+V S + + KN + DP +E G + IA
Sbjct: 248 LALVDAGVGMRDVVCGSSAAVMKVVEEGDGAKNGTKSKYVAIADPSEDEILQASGVVTIA 307
Query: 208 CMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASD 257
MP+ EVT G+ EAM+L + + K ++ C+ + +
Sbjct: 308 IMPNWREVTVWDQFGKMPVESSQEAMELAREGCVTMHKFLKKCVLDGGGE 357
>gi|296413553|ref|XP_002836475.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295630299|emb|CAZ80666.1| unnamed protein product [Tuber melanosporum]
Length = 336
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 88/190 (46%), Gaps = 35/190 (18%)
Query: 20 PTRKTRPPIF--SGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGN------- 70
P T PP+F S + ++ R R F +TG A+GSA+ E
Sbjct: 10 PLEGTIPPVFLTSSTHKSIIK---RSPTTLRKIFLKTGLTPPATGSAFLELPTPSTHSTP 66
Query: 71 -TKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQG----SDHKDFSSMLHKA 125
K+ SV+GPR + +S+ RL + ++ F+TP R +G +D S+ L A
Sbjct: 67 TLKLTSSVYGPRPLPSSTTFSSNARLTAELKFSPFSTPGRRRGYIRDGVERDLSAQLSIA 126
Query: 126 LEGAIILETFPKTTVDVFALVLESGG------------------SDLPVVISCASVALAD 167
L ++ + +PK+ +DVF VL+ G S L ISCAS A+AD
Sbjct: 127 LGKSVAVGKYPKSAIDVFVSVLDCEGGLGDAGDEAGGGVDVGLMSVLATAISCASAAIAD 186
Query: 168 AGIMMYDLVA 177
AGI +DLVA
Sbjct: 187 AGIECFDLVA 196
>gi|229524838|ref|ZP_04414243.1| ribonuclease PH [Vibrio cholerae bv. albensis VL426]
gi|229338419|gb|EEO03436.1| ribonuclease PH [Vibrio cholerae bv. albensis VL426]
Length = 257
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 102/249 (40%), Gaps = 27/249 (10%)
Query: 15 YSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI 74
Y+P PT +P D +RPD+R Q RP A GS EFGNTKV+
Sbjct: 3 YNPA-PTELIQPQ----EGRDPMRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVL 57
Query: 75 ----VSVFGPRESK---KAMMYSNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKAL 126
+ PR K K + + G L T G QG + ++ ++L
Sbjct: 58 CNASIEEGVPRWLKGQGKGWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSL 117
Query: 127 EGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADA-------GIM----MYDL 175
+ LE + + V V+++ G I+ ASVALADA G + M
Sbjct: 118 RAVVDLEAMGEIMITVDCDVIQADGGTRTASITGASVALADAFAHLMAKGQLKKNPMKGH 177
Query: 176 VASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQL 235
VA+VSV LG+++L D E+S D + + E + + G F+ L
Sbjct: 178 VAAVSVGILGEDVLCDLEYVEDSAADTDMNVVMTE---EGKMIEIQGTAEGEPFSHEQLL 234
Query: 236 CLDASAKLG 244
L A AK G
Sbjct: 235 ELLAVAKKG 243
>gi|226504202|ref|NP_001146469.1| uncharacterized protein LOC100280057 [Zea mays]
gi|219887423|gb|ACL54086.1| unknown [Zea mays]
gi|413932389|gb|AFW66940.1| exosome complex exonuclease RRP46 [Zea mays]
Length = 240
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 93/237 (39%), Gaps = 24/237 (10%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R +Q RP ++ A GSA G+T V+ +V+GP+ + G
Sbjct: 7 RADGRNPNQLRPFTCTGNPLHRAHGSARWAQGDTVVLAAVYGPKSGTRK------GENPE 60
Query: 98 NVSYTTFATPVRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPV 156
S P GQ G +++ L + L+ +L P TT V V+ GS +
Sbjct: 61 KASIEVVWKPKTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQVVGDDGSLMSC 120
Query: 157 VISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP-SRYEV 215
I+ + ALA AGI M L ++S + ++I E Q S P SR V
Sbjct: 121 AINASCAALAFAGIPMKHLAVAISCGVMDNGVVILDTSRAEEQQARSFAHLVFPNSRKSV 180
Query: 216 TQLTVT----------------GEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAAS 256
T G S + ++ + AS+++ MR L++ AS
Sbjct: 181 ESKDTTQRDEESERGLITCITHGAMSEDDYFNCIERGVMASSRISDFMRKTLQKEAS 237
>gi|311113412|ref|YP_003984634.1| tRNA nucleotidyltransferase [Rothia dentocariosa ATCC 17931]
gi|310944906|gb|ADP41200.1| tRNA nucleotidyltransferase [Rothia dentocariosa ATCC 17931]
Length = 245
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 100/240 (41%), Gaps = 23/240 (9%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R ++ RP G N A GSA EFG+T+V+ + + + G +
Sbjct: 6 RADGRALNELRPITITRGWSNQAEGSALVEFGDTRVLCTASFTEGVPRWLKGEGKGWVTA 65
Query: 98 NVSYTTFATPVRGQ--------GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ AT R G + S ++ ++L I + + T+ + VL++
Sbjct: 66 EYAMLPRATGTRSSRESVKGKIGGRTHEISRLIGRSLRAVIDMNALGENTIVLDCDVLQA 125
Query: 150 GGSDLPVVISCASVALADA-------GIM------MYDLVASVSVSCLGKNLLID-PVLE 195
G I+ A VALAD+ G++ + D V+++SV + ++D P E
Sbjct: 126 DGGTRTASITGAYVALADSIAWAQRNGLLSPSAKPLKDSVSAISVGIIDGTPMLDLPYTE 185
Query: 196 EESYQDGSLMIACMPSRYEVTQLTVTGE-WSTPHFNEAMQLCLDASAKLGKIMRSCLKEA 254
+ + ++ ++ Q T G + N + L L+ +A+L +I R L+E
Sbjct: 186 DVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRNELNALLDLALEGTAELARIQRESLEEG 245
>gi|229521070|ref|ZP_04410491.1| ribonuclease PH [Vibrio cholerae TM 11079-80]
gi|229341955|gb|EEO06956.1| ribonuclease PH [Vibrio cholerae TM 11079-80]
Length = 257
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 95/229 (41%), Gaps = 22/229 (9%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAM 87
D +RPD+R Q RP A GS EFGNTKV+ + PR K K
Sbjct: 18 DPMRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGW 77
Query: 88 MYSNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALV 146
+ + G L T G QG + ++ ++L + LE + + V V
Sbjct: 78 VTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDV 137
Query: 147 LESGGSDLPVVISCASVALADA-------GIM----MYDLVASVSVSCLGKNLLIDPVLE 195
+++ G I+ ASVALADA G + M VA+VSV LG+++L D
Sbjct: 138 IQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEYV 197
Query: 196 EESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLG 244
E+S D + + E + + G F+ L L A AK G
Sbjct: 198 EDSAADTDMNVVMTE---EGKMIEIQGTAEGEPFSHEQLLELLAVAKKG 243
>gi|156089789|ref|XP_001612301.1| hypothetical protein [Babesia bovis T2Bo]
gi|154799555|gb|EDO08733.1| conserved hypothetical protein [Babesia bovis]
Length = 196
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 5/127 (3%)
Query: 55 GAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSD 114
G SASGS+Y G+T V V PR K ++ +G L+ V Y+ P S
Sbjct: 2 GISYSASGSSYITLGDTMVKACVNVPRPCGKRLL-QEVGILSIEVRYSKPHIP----SSS 56
Query: 115 HKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYD 174
D +L + E +IL +P+ ++ + + E G ++ S+A AD GI M D
Sbjct: 57 DADLRHVLTELFERHVILSRYPRQLIEAWVTIEEDAGGLFGACVTALSLAFADCGIQMLD 116
Query: 175 LVASVSV 181
++A+ SV
Sbjct: 117 ILAATSV 123
>gi|169610820|ref|XP_001798828.1| hypothetical protein SNOG_08517 [Phaeosphaeria nodorum SN15]
gi|160702162|gb|EAT83685.2| hypothetical protein SNOG_08517 [Phaeosphaeria nodorum SN15]
Length = 281
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 91/222 (40%), Gaps = 50/222 (22%)
Query: 54 TGAVNSASGSAYAEF---------------GNTKVIVSVFGPRESKKAMMYSNIGRLNCN 98
T + SASGSAY E K+ SV GP+ ++ +S L
Sbjct: 7 TSIIPSASGSAYLEIPSSSSPTSSTLVSPTSTLKITASVQGPKPLPRSAPFSPSLLLTTT 66
Query: 99 VSYTTFATPVRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE------- 148
V + FAT R + S +D L AL G II E +PK+ V+V +LE
Sbjct: 67 VKFAPFATRHRRGYIRDSTERDLGVHLESALRGVIIGERWPKSGVEVVVTILEGDEDGWW 126
Query: 149 -----------SGGSDLPVVISC---ASVALADAGIMMYDLVASVSVSCLGKN------- 187
SG L V+ C AS A+ DAGI D+V V+ + +N
Sbjct: 127 GDSDTESSASGSGWGLLNVLAGCITVASAAITDAGIDCVDVVTG-GVAAIARNPDSKEQQ 185
Query: 188 ---LLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWST 226
L+DP E + +A + SR E+T++ + G+ T
Sbjct: 186 ELTRLLDPCPAEHKEVVAACAVAYLASRDEITEMWIKGDVGT 227
>gi|153216091|ref|ZP_01950265.1| ribonuclease PH [Vibrio cholerae 1587]
gi|153819951|ref|ZP_01972618.1| ribonuclease PH [Vibrio cholerae NCTC 8457]
gi|153821600|ref|ZP_01974267.1| ribonuclease PH [Vibrio cholerae B33]
gi|153825939|ref|ZP_01978606.1| ribonuclease PH [Vibrio cholerae MZO-2]
gi|227080431|ref|YP_002808982.1| ribonuclease PH [Vibrio cholerae M66-2]
gi|229506989|ref|ZP_04396497.1| ribonuclease PH [Vibrio cholerae BX 330286]
gi|229509359|ref|ZP_04398842.1| ribonuclease PH [Vibrio cholerae B33]
gi|229512476|ref|ZP_04401948.1| ribonuclease PH [Vibrio cholerae TMA 21]
gi|229516306|ref|ZP_04405754.1| ribonuclease PH [Vibrio cholerae RC9]
gi|229527287|ref|ZP_04416680.1| ribonuclease PH [Vibrio cholerae 12129(1)]
gi|229606497|ref|YP_002877145.1| ribonuclease PH [Vibrio cholerae MJ-1236]
gi|254291599|ref|ZP_04962388.1| ribonuclease PH [Vibrio cholerae AM-19226]
gi|297581663|ref|ZP_06943585.1| ribonuclease PH [Vibrio cholerae RC385]
gi|298500852|ref|ZP_07010654.1| ribonuclease PH [Vibrio cholerae MAK 757]
gi|9654617|gb|AAF93386.1| ribonuclease PH [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|124114467|gb|EAY33287.1| ribonuclease PH [Vibrio cholerae 1587]
gi|126509515|gb|EAZ72109.1| ribonuclease PH [Vibrio cholerae NCTC 8457]
gi|126520887|gb|EAZ78110.1| ribonuclease PH [Vibrio cholerae B33]
gi|149740347|gb|EDM54483.1| ribonuclease PH [Vibrio cholerae MZO-2]
gi|150422456|gb|EDN14414.1| ribonuclease PH [Vibrio cholerae AM-19226]
gi|227008319|gb|ACP04531.1| ribonuclease PH [Vibrio cholerae M66-2]
gi|229335295|gb|EEO00779.1| ribonuclease PH [Vibrio cholerae 12129(1)]
gi|229346732|gb|EEO11702.1| ribonuclease PH [Vibrio cholerae RC9]
gi|229350475|gb|EEO15423.1| ribonuclease PH [Vibrio cholerae TMA 21]
gi|229353674|gb|EEO18611.1| ribonuclease PH [Vibrio cholerae B33]
gi|229356094|gb|EEO21013.1| ribonuclease PH [Vibrio cholerae BX 330286]
gi|229369152|gb|ACQ59575.1| ribonuclease PH [Vibrio cholerae MJ-1236]
gi|297534070|gb|EFH72909.1| ribonuclease PH [Vibrio cholerae RC385]
gi|297540356|gb|EFH76415.1| ribonuclease PH [Vibrio cholerae MAK 757]
Length = 257
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 102/249 (40%), Gaps = 27/249 (10%)
Query: 15 YSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI 74
Y+P PT +P D +RPD+R Q RP A GS EFGNTKV+
Sbjct: 3 YNPA-PTELIQPQ----EGRDPMRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVL 57
Query: 75 ----VSVFGPRESK---KAMMYSNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKAL 126
+ PR K K + + G L T G QG + ++ ++L
Sbjct: 58 CNASIEEGVPRWLKGQGKGWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSL 117
Query: 127 EGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADA-------GIM----MYDL 175
+ LE + + V V+++ G I+ ASVALADA G + M
Sbjct: 118 RAVVDLEAMGEIMITVDCDVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGH 177
Query: 176 VASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQL 235
VA+VSV LG+++L D E+S D + + E + + G F+ L
Sbjct: 178 VAAVSVGILGEDVLCDLEYVEDSAADTDMNVVMTE---EGKMIEIQGTAEGEPFSHEQLL 234
Query: 236 CLDASAKLG 244
L A AK G
Sbjct: 235 ELLAVAKKG 243
>gi|115388037|ref|XP_001211524.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114195608|gb|EAU37308.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 246
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 28/158 (17%)
Query: 20 PTRKTRPPIFSGS----DVDWLRPD-SRGFHQCRPAFFRTGAVNSASGSAYAEF------ 68
P TRPP+F+ S RP R ++ R F +TG + SASGSAY EF
Sbjct: 10 PPSGTRPPVFASSLNAVPGAATRPQRQRQPNELRKIFLKTGLIPSASGSAYLEFEPSPSL 69
Query: 69 ----GNTKVIV----------SVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG---Q 111
N K ++ +V GP+ ++ +S L +V Y FA R +
Sbjct: 70 AAARSNPKSLIPPSSALKLACTVHGPKPLPRSATFSPNLVLTTHVKYAPFAARQRKGHIR 129
Query: 112 GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ +D L AL G I+ E +PK+ +D+ +LE+
Sbjct: 130 DASERDLGVHLETALRGVIVAERWPKSGLDITITILEA 167
>gi|302882007|ref|XP_003039914.1| hypothetical protein NECHADRAFT_96576 [Nectria haematococca mpVI
77-13-4]
gi|256720781|gb|EEU34201.1| hypothetical protein NECHADRAFT_96576 [Nectria haematococca mpVI
77-13-4]
Length = 268
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 25/159 (15%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMM-----YSN 91
LR D R +++ R + ++A GS+Y E G+TKV+ V GP E + +
Sbjct: 13 LRVDGRRWNELRRLNAQIRTQDAADGSSYLEMGHTKVMCVVTGPSEQGQQQRRVQTAQRD 72
Query: 92 IGRLNCNVSYTTFATPVRGQ-GSDHKD-----------FSSMLHKALEGAIILETFPKTT 139
+ +N NV F++ R + G + K F+S LH L FP ++
Sbjct: 73 VAAINVNVVTAGFSSVDRKKRGRNDKRTQEIEVTIANAFASNLHTHL--------FPHSS 124
Query: 140 VDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVAS 178
+ + VL GS L +++ ++AL DAGI M D +A+
Sbjct: 125 ITISLHVLSQDGSLLAALLNATTLALIDAGIPMTDYIAA 163
>gi|395236506|ref|ZP_10414695.1| ribonuclease PH [Turicella otitidis ATCC 51513]
gi|423350611|ref|ZP_17328264.1| ribonuclease PH [Turicella otitidis ATCC 51513]
gi|394488394|emb|CCI82783.1| ribonuclease PH [Turicella otitidis ATCC 51513]
gi|404387376|gb|EJZ82496.1| ribonuclease PH [Turicella otitidis ATCC 51513]
Length = 247
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 105/245 (42%), Gaps = 27/245 (11%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI--------VSVFGPRESKKA 86
D+ R D R + RP G + +GS AEFGNTKV+ V F R+S +
Sbjct: 5 DFTRADGRATSELRPVRLTRGFTTNPAGSVLAEFGNTKVLCAASIQEGVPRF-KRDSGEG 63
Query: 87 MMYSNIGRLNCNVSYTTFATPVRG--QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFA 144
+ + L + + +RG +G H + S ++ ++L A+ L + T+ +
Sbjct: 64 WLTAEYAMLPASTHERSPRESMRGKVKGRTH-EISRLVGRSLRAAVDLSELGENTIQLDC 122
Query: 145 LVLESGGSDLPVVISCASVALADA-----------GIMMYDLVASVSVSCLGKNLLIDPV 193
VL++ G I+ A VALADA G + + VA+VSV + +D
Sbjct: 123 DVLQADGGTRTAAITGAYVALADAIAELQSRGVVPGTPLKEPVAAVSVGIIDGVACLDLP 182
Query: 194 LEEESYQDGSLMIACMPSRYEVTQLTVTGEWST---PHFNEAMQLCLDASAKLGKIMRSC 250
EE+S + + + M + ++ TGE T E + L +L + R+
Sbjct: 183 YEEDSRAEVDMNV-VMTASGRFVEIQGTGEDGTFDRGQLGELLDLAAGGCRRLVEEQRAA 241
Query: 251 LKEAA 255
L+ A
Sbjct: 242 LRGGA 246
>gi|258620570|ref|ZP_05715607.1| ribonuclease PH [Vibrio mimicus VM573]
gi|262172697|ref|ZP_06040375.1| ribonuclease PH [Vibrio mimicus MB-451]
gi|417822383|ref|ZP_12468983.1| ribonuclease PH [Vibrio cholerae HE48]
gi|424810044|ref|ZP_18235411.1| ribonuclease PH [Vibrio mimicus SX-4]
gi|449145443|ref|ZP_21776249.1| ribonuclease PH [Vibrio mimicus CAIM 602]
gi|258587085|gb|EEW11797.1| ribonuclease PH [Vibrio mimicus VM573]
gi|261893773|gb|EEY39759.1| ribonuclease PH [Vibrio mimicus MB-451]
gi|340049626|gb|EGR10540.1| ribonuclease PH [Vibrio cholerae HE48]
gi|342322682|gb|EGU18470.1| ribonuclease PH [Vibrio mimicus SX-4]
gi|449078982|gb|EMB49910.1| ribonuclease PH [Vibrio mimicus CAIM 602]
Length = 238
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 99/227 (43%), Gaps = 22/227 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RPD+R Q RP A GS EFGNTKV+ + PR K K +
Sbjct: 1 MRPDNRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60
Query: 90 SNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L T G QG + ++ ++L + LE + + V V++
Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMSEIMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA-------GIM----MYDLVASVSVSCLGKNLLIDPVLEEE 197
+ G I+ ASVALADA G + M VA+VSV LG+++L D E+
Sbjct: 121 ADGGTRTASITGASVALADAFAHLMAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEYVED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLG 244
S D + + M ++ ++ T E P +E + L L A AK G
Sbjct: 181 SAADTDMNV-VMTEEGKMIEIQGTAE-GEPFSHEQL-LELLAVAKKG 224
>gi|71002504|ref|XP_755933.1| 3' exoribonuclease family protein [Aspergillus fumigatus Af293]
gi|66853571|gb|EAL93895.1| 3' exoribonuclease family protein [Aspergillus fumigatus Af293]
gi|159129990|gb|EDP55104.1| 3' exoribonuclease family protein [Aspergillus fumigatus A1163]
Length = 320
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 109/262 (41%), Gaps = 59/262 (22%)
Query: 20 PTRKTRPPIFSGS-----DVDWLRPD-SRGFHQCRPAFFRTGAVNSASGSAYAEF----- 68
P TRP +F+ S D RP R ++ R F +TG + SASGS+Y EF
Sbjct: 10 PPSGTRPAVFASSLKSTTDTTTGRPQRQRQPNELRKIFLKTGLIPSASGSSYLEFEPSAS 69
Query: 69 ---------------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG--- 110
K+ +V GP+ ++ +S L +V Y FA R
Sbjct: 70 LAAARSSPQSLIPPSSALKLACTVHGPKPLPRSATFSPNLVLTTHVKYAPFAARRRKGHI 129
Query: 111 QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES----------GGSDLP----- 155
+ + +D L AL G I+ E +PK+ +D+ +LE+ D P
Sbjct: 130 RDTSERDLGVHLETALRGVIVAERWPKSGLDITITILEAEDDRWWGDAPDSHDAPWGMMN 189
Query: 156 VVISCASVALADAG---IMMYDLVASVSVSCL-------GKNLLIDPVLEEESYQDGSLM 205
V+ C + A A I DLVA V+ L G+ +L+ + + S++
Sbjct: 190 VLAGCITAASAAIADARIDCLDLVAG-GVAALVSDESPEGERSAPKLMLDTDPAEHRSIL 248
Query: 206 IAC----MPSRYEVTQLTVTGE 223
AC MPSR E+T++ + G+
Sbjct: 249 SACVVAYMPSRDEITEIWLKGD 270
>gi|388502864|gb|AFK39498.1| unknown [Medicago truncatula]
Length = 180
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 4/163 (2%)
Query: 95 LNCNVSYTTFAT--PVRGQGSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ C S F+T +R D + + S ++ + +E I+ P++ +D++ VL++
Sbjct: 7 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIYVQVLQAD 66
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
G I+ A++ALADAGI M DLV S S L L+D E+S + + +
Sbjct: 67 GGTRSACINAATLALADAGIPMLDLVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILL 126
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
+VT L + + MQL + + +R L E
Sbjct: 127 KLDKVTLLQMDSKLPIDILENVMQLATEGCKAIANYIREILLE 169
>gi|254566183|ref|XP_002490202.1| exosome component [Komagataella pastoris GS115]
gi|238029998|emb|CAY67921.1| exosome component [Komagataella pastoris GS115]
gi|328350600|emb|CCA37000.1| hypothetical protein PP7435_Chr1-0864 [Komagataella pastoris CBS
7435]
Length = 260
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 23/158 (14%)
Query: 42 RGFHQCRPA------FFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
+ H +P+ F G V + GS Y E NT + VSV+GPR + + + + L
Sbjct: 38 KKLHVSQPSSGDDKIFVDMGLVTNCEGSCYMEIDNTLIQVSVYGPRPIRGSFI--DTATL 95
Query: 96 NCNVSYTTFATPVR----GQGSD-----HKDFSSMLHKALEGAIILETFPKTTVDVFALV 146
+ + F T + G G + + SS ++ IIL +PK+++D+F V
Sbjct: 96 SVECRFLPFLTESKEFANGNGRNSLTEIEQRLSSFVYSCFVNTIILSKYPKSSIDIFIKV 155
Query: 147 LESGGSDLPVV------ISCASVALADAGIMMYDLVAS 178
+ D + ++CAS+++ DA I + D++ +
Sbjct: 156 ISVDSYDTNFIKLTNYLVNCASLSIVDAQIEVKDIITA 193
>gi|258625880|ref|ZP_05720755.1| ribonuclease PH [Vibrio mimicus VM603]
gi|258581844|gb|EEW06718.1| ribonuclease PH [Vibrio mimicus VM603]
Length = 238
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 99/227 (43%), Gaps = 22/227 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RPD+R Q RP A GS EFGNTKV+ + PR K K +
Sbjct: 1 MRPDNRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60
Query: 90 SNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L T G QG + ++ ++L + LE + + V V++
Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA-------GIM----MYDLVASVSVSCLGKNLLIDPVLEEE 197
+ G I+ ASVALADA G + M VA+VSV LG+++L D E+
Sbjct: 121 ADGGTRTASITGASVALADAFAHLMAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEYVED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLG 244
S D + + M ++ ++ T E P +E + L L A AK G
Sbjct: 181 SAADTDMNV-VMTEEGKMIEIQGTAE-GEPFSHEQL-LELLAVAKKG 224
>gi|121710390|ref|XP_001272811.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Aspergillus clavatus NRRL 1]
gi|119400961|gb|EAW11385.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Aspergillus clavatus NRRL 1]
Length = 269
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 10/152 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK-------AMMY 89
LR D R +++ R + ++SGS++ GNT ++ SV GP E K+ A
Sbjct: 14 LRLDGRRWNELRLLSAQISTNPASSGSSFLSMGNTSIMCSVHGPAEGKRGDATGGAAGSA 73
Query: 90 SNIGRLNCNVS-YTTFATPVRGQGSDHKD--FSSMLHKALEGAIILETFPKTTVDVFALV 146
I ++ NV+ + R GSD + +++L A + + +P +T+ + V
Sbjct: 74 GAIVEVDVNVAGFAGVDRKRRAGGSDRQSSRIATILRSAFQSHLHTHLYPHSTISIHVSV 133
Query: 147 LESGGSDLPVVISCASVALADAGIMMYDLVAS 178
L S GS L ++ ++AL DAGI M L+++
Sbjct: 134 LSSDGSLLAAAVNACTLALVDAGIPMPGLLSA 165
>gi|448509267|ref|XP_003866101.1| hypothetical protein CORT_0A02710 [Candida orthopsilosis Co 90-125]
gi|380350439|emb|CCG20661.1| hypothetical protein CORT_0A02710 [Candida orthopsilosis Co 90-125]
Length = 297
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 117/259 (45%), Gaps = 62/259 (23%)
Query: 45 HQCRPAFFRTGAVNSASGSAYAEFGNTKVI-VSVFGPRESKKAMM--------------- 88
+Q P F + G + +++GSAY E +T +I VSVFGPR + + +
Sbjct: 42 NQVPPFFLKHGLITNSNGSAYLEINDTTIIQVSVFGPRPIRGSFIDKASISVETKFLPHV 101
Query: 89 ---YSNI---------GRLNCNVS-YTTFATPVRGQGSDHKDFSSMLHKALEGAIILETF 135
S+I GR N S Y T +P+ +H+ FSS L L +I+L +
Sbjct: 102 PQPQSDIFNDSNNNSNGRDTFNASGYRTGMSPI-----EHR-FSSYLESCLLPSILLSKY 155
Query: 136 PKTTVDVFALVLES-------GGS--DLPVVISCASVALADAGIMMYDLVASVSVSC--- 183
PK+T+D+ ++ + GG + ++ +S+A+ DAGI + D+V S V
Sbjct: 156 PKSTIDLQVSIISTDPQCRGLGGMLWLMQWIVVVSSLAIIDAGIEIRDVVTSGVVKWTRE 215
Query: 184 ----LGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNE------AM 233
+G++L D EE ++G I + S + + G W ++ +
Sbjct: 216 GEIRIGQDL--DYKKEEGGVENG---IYALVSFMNLKNDEIVGCWFEGDGDDDGLSESEV 270
Query: 234 QLCLDASAKLGKIMRSCLK 252
+ +D S K+ K++R+ L
Sbjct: 271 EKLIDESCKMSKLIRANLN 289
>gi|262163750|ref|ZP_06031490.1| ribonuclease PH [Vibrio mimicus VM223]
gi|262027730|gb|EEY46395.1| ribonuclease PH [Vibrio mimicus VM223]
Length = 238
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 99/227 (43%), Gaps = 22/227 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RPD+R Q RP A GS EFGNTKV+ + PR K K +
Sbjct: 1 MRPDNRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60
Query: 90 SNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L T G QG + ++ ++L + LE + + V V++
Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA-------GIM----MYDLVASVSVSCLGKNLLIDPVLEEE 197
+ G I+ ASVALADA G + M VA+VSV LG+++L D E+
Sbjct: 121 ADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEYVED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLG 244
S D + + M ++ ++ T E P +E + L L A AK G
Sbjct: 181 SAADTDMNV-VMTEEGKMIEIQGTAE-GDPFSHEQL-LELLAVAKKG 224
>gi|134076396|emb|CAK48214.1| unnamed protein product [Aspergillus niger]
Length = 248
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 10/156 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK-------AMMY 89
LR D R +++ R + ++SGS+Y GNT ++ SV GP E ++ A
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLAMGNTAILCSVHGPAEGRRGDATGGAAGSA 73
Query: 90 SNIGRLNCNVS-YTTFATPVRGQGSDHKD--FSSMLHKALEGAIILETFPKTTVDVFALV 146
+ ++ NV+ + R GSD + +++L A + + +P +T+ + V
Sbjct: 74 GAVVEVDVNVAGFAGVDRKRRAGGSDKQSSRVATILRSAFQSHLHTHLYPHSTISIHVSV 133
Query: 147 LESGGSDLPVVISCASVALADAGIMMYDLVASVSVS 182
L S GS L ++ ++AL DAGI M L+ + S
Sbjct: 134 LSSDGSLLAAAVNACTLALVDAGIPMPGLLCGCTAS 169
>gi|376243405|ref|YP_005134257.1| ribonuclease PH [Corynebacterium diphtheriae CDCE 8392]
gi|376249097|ref|YP_005141041.1| ribonuclease PH [Corynebacterium diphtheriae HC04]
gi|376285333|ref|YP_005158543.1| ribonuclease PH [Corynebacterium diphtheriae 31A]
gi|376288338|ref|YP_005160904.1| ribonuclease PH [Corynebacterium diphtheriae BH8]
gi|376291009|ref|YP_005163256.1| ribonuclease PH [Corynebacterium diphtheriae C7 (beta)]
gi|376293862|ref|YP_005165536.1| ribonuclease PH [Corynebacterium diphtheriae HC02]
gi|371578848|gb|AEX42516.1| ribonuclease PH [Corynebacterium diphtheriae 31A]
gi|371585672|gb|AEX49337.1| ribonuclease PH [Corynebacterium diphtheriae BH8]
gi|372104405|gb|AEX68002.1| ribonuclease PH [Corynebacterium diphtheriae C7 (beta)]
gi|372106647|gb|AEX72709.1| ribonuclease PH [Corynebacterium diphtheriae CDCE 8392]
gi|372111185|gb|AEX77245.1| ribonuclease PH [Corynebacterium diphtheriae HC02]
gi|372115665|gb|AEX81723.1| ribonuclease PH [Corynebacterium diphtheriae HC04]
Length = 241
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 104/228 (45%), Gaps = 24/228 (10%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGP---RESKKAM 87
D+ R D R Q R G ++ +GS EFGNT+V+ V + P R+S +
Sbjct: 3 DFSRADGRAVDQMRTVKITRGFTSNPAGSVLVEFGNTRVMCTASVELGVPRFKRDSGEGW 62
Query: 88 MYSNIGRLNCNVSYTTFATPVRG--QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFAL 145
+ + L + +RG +G H + S ++ ++L A+ L + T+++
Sbjct: 63 LTAEYAMLPAATAERNARESMRGKVKGRTH-EISRLIGRSLRAAVDLGELGENTINIDCD 121
Query: 146 VLESGGSDLPVVISCASVALADAGIMMYDL-----------VASVSVSCLGKNLLIDPVL 194
VL++ G I+ A VALADA ++ + VA+VSV + + +D
Sbjct: 122 VLQADGGTRTASITGAYVALADAIAVLKEQGVVPGNPLKAPVAAVSVGVIDGQVCLDLPY 181
Query: 195 EEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAK 242
EE+S D + + R+ ++ TGE +T +E + + LD + K
Sbjct: 182 EEDSRADVDMNVIMQGDRF--VEIQGTGEHNTFDRDE-LAVILDFAQK 226
>gi|71649471|ref|XP_813459.1| exosome complex exonuclease RRP41A [Trypanosoma cruzi strain CL
Brener]
gi|70878342|gb|EAN91608.1| exosome complex exonuclease RRP41A, putative [Trypanosoma cruzi]
Length = 195
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 72/176 (40%), Gaps = 5/176 (2%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRL 95
LR D R + R G V G G V SV+GPRE + + N +
Sbjct: 13 LRLDGRRPQESRRMTLEFGKVLGCDGCCTVMSGLATVCASVYGPREVTNRLESKYNECII 72
Query: 96 NCNVSYTTFATPVRGQGSDHKDFSSMLHKAL----EGAIILETFPKTTVDVFALVLESGG 151
C V+ FA R S + A+ ++L +P + + + VL G
Sbjct: 73 TCEVAIAAFAGEKRRAPQRRSKLSEEMSAAVLEVARSVVLLSQYPNSQIHICVEVLRQDG 132
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIA 207
SD I+ A +AL DA + M D+V + +V + ++D EE Q ++ IA
Sbjct: 133 SDKAACINAACLALVDASVAMRDIVYAQTVGLINAVDVVDLTTEEMRSQCPTICIA 188
>gi|14250906|emb|CAC39258.1| Rrp41p homologue [Trypanosoma brucei]
Length = 252
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 79/176 (44%), Gaps = 7/176 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAM--MYSNIGR 94
LR D R ++ R G ++ G G + V +V+GPRE + Y+ +
Sbjct: 13 LRLDGRRQNEPRRLALEFGKISGCDGCCTVVSGLSHVCATVYGPREVSNRLDGKYNEVT- 71
Query: 95 LNCNVSYTTFATPVRGQGSDH----KDFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ C+V FA R + + +D S+ + ++L +P + + + VL+
Sbjct: 72 ITCDVVVAAFAGERRREQQRYSRLSEDISASVLDVARSVVLLSQYPNSQIHICIEVLKQD 131
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMI 206
GSD I+ A +AL DA I M D+V + +V + ++D EE Q S+ I
Sbjct: 132 GSDKAACINAACLALIDASIAMRDVVYTQTVGLIEGFDVVDLTTEEIHSQCPSICI 187
>gi|300741332|ref|ZP_07071353.1| tRNA nucleotidyltransferase [Rothia dentocariosa M567]
gi|300380517|gb|EFJ77079.1| tRNA nucleotidyltransferase [Rothia dentocariosa M567]
Length = 245
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 100/240 (41%), Gaps = 23/240 (9%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R ++ RP G N A GSA EFG+T+V+ + + + G +
Sbjct: 6 RADGRTLNELRPITITRGWSNQAEGSALVEFGDTRVLCTASFTEGVPRWLKGEGKGWVTA 65
Query: 98 NVSYTTFATPVRGQ--------GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ AT R G + S ++ ++L I + + T+ + VL++
Sbjct: 66 EYAMLPRATGTRSSRESVKGKIGGRTHEISRLIGRSLRAIIDMNALGENTIVLDCDVLQA 125
Query: 150 GGSDLPVVISCASVALADA-------GIM------MYDLVASVSVSCLGKNLLID-PVLE 195
G I+ A VALAD+ G++ + D V+++SV + ++D P E
Sbjct: 126 DGGTRTASITGAYVALADSIAWAQRNGLLSPSDKPLKDSVSAISVGIIDGTPMLDLPYTE 185
Query: 196 EESYQDGSLMIACMPSRYEVTQLTVTGE-WSTPHFNEAMQLCLDASAKLGKIMRSCLKEA 254
+ + ++ ++ Q T G + N + L L+ +A+L +I R L+E
Sbjct: 186 DVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRDELNALLDLALEGTAELARIQRESLEEG 245
>gi|68490966|ref|XP_710705.1| potential exosome component Mtr3p [Candida albicans SC5314]
gi|46431941|gb|EAK91457.1| potential exosome component Mtr3p [Candida albicans SC5314]
Length = 291
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 111/256 (43%), Gaps = 62/256 (24%)
Query: 49 PAFF-RTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC---------- 97
P+FF + +++A+GSAY E NT + VS+FGPR + + + +C
Sbjct: 39 PSFFLKHSIIDNANGSAYLEINNTIIEVSIFGPRPIRGSFIDRASVSADCKFLPHIIQPM 98
Query: 98 -------------------NVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKT 138
N Y T + +HK SS L + ++ILE +PK+
Sbjct: 99 ASIFNDTTTSGGGGGISSSNRGYRTGMNNI-----EHK-LSSYLETCVLSSLILEKYPKS 152
Query: 139 TVDVFALVL----ESGGSD-----LPVVISCASVALADAGIMMYDLVAS--VSVSCLGKN 187
T+D+ ++ E GG L + C S+AL D+GI M D+++S V ++ GK
Sbjct: 153 TIDIQVSIISIDKEIGGGHSLLWLLQWITCCCSLALVDSGIEMKDIISSGQVRLTKSGK- 211
Query: 188 LLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEW----------STPHFNEA-MQLC 236
++I ++ S +DG I + S + + G W NE+ M+
Sbjct: 212 IIIGGNSDKTSTEDG---IDGLVSFMNLKNDEIVGIWFEGEGDDNNNEDSLLNESNMEKL 268
Query: 237 LDASAKLGKIMRSCLK 252
+ K+ KI+R+ L
Sbjct: 269 IIECNKMSKIIRANLN 284
>gi|27364280|ref|NP_759808.1| ribonuclease PH [Vibrio vulnificus CMCP6]
gi|37678463|ref|NP_933072.1| ribonuclease PH [Vibrio vulnificus YJ016]
gi|320157673|ref|YP_004190052.1| ribonuclease PH [Vibrio vulnificus MO6-24/O]
gi|33301654|sp|Q8DDX4.1|RNPH_VIBVU RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|61216003|sp|Q7MPT3.1|RNPH_VIBVY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|27360398|gb|AAO09335.1| ribonuclease PH [Vibrio vulnificus CMCP6]
gi|37197203|dbj|BAC93043.1| RNase PH [Vibrio vulnificus YJ016]
gi|319932985|gb|ADV87849.1| ribonuclease PH [Vibrio vulnificus MO6-24/O]
Length = 238
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 97/227 (42%), Gaps = 22/227 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RP+ R Q RP A GS EFGNTKV+ V PR K K +
Sbjct: 1 MRPNDRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 60
Query: 90 SNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L T G QG + ++ ++L + LE + + V V++
Sbjct: 61 AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLEAMGEFMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADAGIMMYD-----------LVASVSVSCLGKNLLIDPVLEEE 197
+ G IS ASVA+ADA + D VA+VSV LG+++L D E+
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGILGEDVLCDLEYVED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLG 244
S D + + M ++ ++ T E P +E + L L SAK G
Sbjct: 181 SAADTDMNV-VMTEEGKMIEIQGTAE-GEPFSHEQL-LALLESAKKG 224
>gi|308801625|ref|XP_003078126.1| Exosomal 3'-5' exoribonuclease complex, subunit Rrp41 and related
exoribonucleases (ISS) [Ostreococcus tauri]
gi|116056577|emb|CAL52866.1| Exosomal 3'-5' exoribonuclease complex, subunit Rrp41 and related
exoribonucleases (ISS) [Ostreococcus tauri]
Length = 378
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 96/222 (43%), Gaps = 13/222 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LRPD R R V SASGSA T V+ +V GP + G ++
Sbjct: 128 LRPDGRSREMLRRQRLHRSRVPSASGSAEYRIDGTIVVAAVHGPLRIAPWREAHDRGVID 187
Query: 97 CNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPV 156
+S + + D + L A+E + L FP+ + + A V+ G+
Sbjct: 188 VELSAPGWMS-----RDDQRACEGRLRGAIERCVELRDFPRFGLRISARVVSDDGNAEAA 242
Query: 157 VISCASVALADAGIMMYDLVASVSVSCLGK-NLLIDPVLEEESYQDGSLMIACMPSRYE- 214
++ AL DA + M L+ + + + + +++IDP EE+ + +++ AC S++
Sbjct: 243 CVNAVCCALIDANVPMRGLICANACALTREGSMVIDPTKREET-EARAVVRACALSKHRE 301
Query: 215 -----VTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
+ + TG + + +A+ +DA+A + I + +
Sbjct: 302 KDEIAIVGCSTTGALTEKEYLDAIAFIVDATAAVVNIQKKSI 343
>gi|376254917|ref|YP_005143376.1| ribonuclease PH [Corynebacterium diphtheriae PW8]
gi|372118001|gb|AEX70471.1| ribonuclease PH [Corynebacterium diphtheriae PW8]
Length = 241
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 104/228 (45%), Gaps = 24/228 (10%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGP---RESKKAM 87
D+ R D R Q R G ++ +GS EFGNT+V+ V + P R+S +
Sbjct: 3 DFSRADGRAVDQMRTVKITRGFTSNPAGSVLVEFGNTRVMCTASVELGVPRFKRDSGEGW 62
Query: 88 MYSNIGRLNCNVSYTTFATPVRG--QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFAL 145
+ + L + +RG +G H + S ++ ++L A+ L + T+++
Sbjct: 63 LTAEYAMLPAATAERNSRESMRGKVKGRTH-EISRLIGRSLRAAVDLGELGENTINIDCD 121
Query: 146 VLESGGSDLPVVISCASVALADAGIMMYDL-----------VASVSVSCLGKNLLIDPVL 194
VL++ G I+ A VALADA ++ + VA+VSV + + +D
Sbjct: 122 VLQADGGTRTASITGAYVALADAIAVLKEQGVVPGNPLKAPVAAVSVGVIDGQVCLDLPY 181
Query: 195 EEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAK 242
EE+S D + + R+ ++ TGE +T +E + + LD + K
Sbjct: 182 EEDSRADVDMNVIMQGDRF--VEIQGTGEHNTFDRDE-LAVILDFAQK 226
>gi|153800847|ref|ZP_01955433.1| ribonuclease PH [Vibrio cholerae MZO-3]
gi|124123678|gb|EAY42421.1| ribonuclease PH [Vibrio cholerae MZO-3]
Length = 257
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 101/249 (40%), Gaps = 27/249 (10%)
Query: 15 YSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI 74
Y+P PT +P D +RPD+R Q RP A GS EFGNTKV+
Sbjct: 3 YNPA-PTELIQPQ----EGRDPMRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVL 57
Query: 75 ----VSVFGPRESK---KAMMYSNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKAL 126
+ PR K K + + G L T G QG + ++ ++L
Sbjct: 58 CNASIEEGVPRWLKGQGKGWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSL 117
Query: 127 EGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADA-------GIM----MYDL 175
+ LE + + V V+++ G I+ ASVALADA G + M
Sbjct: 118 RAVVDLEAMGEIMITVDCDVIQADGGTRTASITGASVALADAFTHLIAKGQLKKNPMKGH 177
Query: 176 VASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQL 235
VA+VSV LG ++L D E+S D + + E + + G F+ L
Sbjct: 178 VAAVSVGILGGDVLCDLEYVEDSAADTDMNVVMTE---EGKMIEIQGTAEGEPFSHEQLL 234
Query: 236 CLDASAKLG 244
L A AK G
Sbjct: 235 ELLAVAKKG 243
>gi|346320011|gb|EGX89612.1| exosome complex exonuclease RRP41 [Cordyceps militaris CM01]
Length = 273
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 106/239 (44%), Gaps = 25/239 (10%)
Query: 37 LRPDSRGFHQCR--PAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYS---- 90
LR D R +++ R A RT ++A GS+Y E G+TKV+ V GP E ++
Sbjct: 13 LRVDGRRWNELRRLHALIRTQ--DAADGSSYLEIGHTKVMCVVSGPSEQQQQQQAQRRGG 70
Query: 91 --NIGR----LNCNVSYTTFATPVRGQ-GSDHKDFSSM---LHKALEGAIILETFPKTTV 140
N R ++ N+ F++ R + G + K M + KA + FP +++
Sbjct: 71 QANATRDGATVHVNIIIAGFSSVDRKKRGRNDKRIQEMEITIAKAFSSNLHTHIFPHSSI 130
Query: 141 DVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSV----SCLGKNLLIDPVLE- 195
+ VL GS L +++ ++AL DAGI M D +A+ + S + DP+L+
Sbjct: 131 AISLHVLSQDGSLLAALLNATTLALVDAGIPMTDYIAACTAGSTSSFAAGDDAADPLLDL 190
Query: 196 --EESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
+E + L +A + V L F + + +D ++ K + S +K
Sbjct: 191 NTQEEQELPYLTVATLGGSDRVAVLACESRIQVSRFEGMLVVGVDGCKQVKKFLDSVVK 249
>gi|421353041|ref|ZP_15803379.1| ribonuclease PH [Vibrio cholerae HE-45]
gi|395955500|gb|EJH66096.1| ribonuclease PH [Vibrio cholerae HE-45]
Length = 238
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 99/227 (43%), Gaps = 22/227 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RPD+R Q RP A GS EFGNTKV+ + PR K K +
Sbjct: 1 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQDKGWVT 60
Query: 90 SNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L T G QG + ++ ++L + LE + + V V++
Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA-------GIM----MYDLVASVSVSCLGKNLLIDPVLEEE 197
+ G I+ ASVALADA G + M VA+VSV LG+++L D E+
Sbjct: 121 ADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEYVED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLG 244
S D + + M ++ ++ T E P +E + L L A AK G
Sbjct: 181 SAADTDMNV-VMTEEGKMIEIQGTAE-GEPFSHEQL-LELLAVAKKG 224
>gi|50552404|ref|XP_503612.1| YALI0E06039p [Yarrowia lipolytica]
gi|49649481|emb|CAG79193.1| YALI0E06039p [Yarrowia lipolytica CLIB122]
Length = 262
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 77/154 (50%), Gaps = 23/154 (14%)
Query: 51 FFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN--------CN---- 98
F +TG V +A+GSAY E + K++ V GPR + S I ++ C+
Sbjct: 37 FVKTGVVENANGSAYLELDDIKIVAIVHGPRPMRGLFTTSAILNVDTKFLPVSLCDIESK 96
Query: 99 ---VSYTTFATPVRG-----QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
VS T +R S K+ SS +H +L +I++E +PK+T+DV VL S
Sbjct: 97 SAVVSSTQLTQYIRSASTTQSSSLQKNVSSYVHTSLLPSILVEKYPKSTIDVSISVLSSS 156
Query: 151 GSDLPVV---ISCASVALADAGIMMYDLVASVSV 181
+ V +SCA ALAD+G+ D+V + SV
Sbjct: 157 NNTKTTVAAAVSCAGAALADSGLECTDIVTAGSV 190
>gi|261213164|ref|ZP_05927447.1| ribonuclease PH [Vibrio sp. RC341]
gi|422908743|ref|ZP_16943414.1| ribonuclease PH [Vibrio cholerae HE-09]
gi|260837582|gb|EEX64276.1| ribonuclease PH [Vibrio sp. RC341]
gi|341638702|gb|EGS63341.1| ribonuclease PH [Vibrio cholerae HE-09]
Length = 238
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 99/227 (43%), Gaps = 22/227 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RPD+R Q RP A GS EFGNTKV+ + PR K K +
Sbjct: 1 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60
Query: 90 SNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L T G QG + ++ ++L + LE + + V V++
Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA-------GIM----MYDLVASVSVSCLGKNLLIDPVLEEE 197
+ G I+ ASVALADA G + M VA+VSV LG+++L D E+
Sbjct: 121 ADGGTRTASITGASVALADAFAHLMAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEYVED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLG 244
S D + + M ++ ++ T E P +E + L L A AK G
Sbjct: 181 SAADTDMNV-VMTEEGKMIEIQGTAE-GEPFSHEQL-LELLAVAKKG 224
>gi|153830706|ref|ZP_01983373.1| ribonuclease PH [Vibrio cholerae 623-39]
gi|148873826|gb|EDL71961.1| ribonuclease PH [Vibrio cholerae 623-39]
Length = 257
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 106/249 (42%), Gaps = 27/249 (10%)
Query: 15 YSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI 74
Y+P PT +P D +RPD+R Q RP A GS EFGNTKV+
Sbjct: 3 YNPA-PTELIQPQ----EGRDPMRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVL 57
Query: 75 ----VSVFGPRESK---KAMMYSNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKAL 126
+ PR K K + + G L T G QG + ++ ++L
Sbjct: 58 CNASIEEGVPRWLKGQGKGWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSL 117
Query: 127 EGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADA-------GIM----MYDL 175
+ LE + + V V+++ G I+ ASVALADA G + M
Sbjct: 118 RAVVDLEAMGEIMITVDCDVIQADGGTRTASITGASVALADAFTHLIAKGQLKKNPMKGH 177
Query: 176 VASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQL 235
VA+VSV LG ++L D E+S D + + M ++ ++ T E P +E + L
Sbjct: 178 VAAVSVGILGGDVLCDLEYVEDSAADTDMNV-VMTEEGKMIEIQGTAE-GEPFCHEQL-L 234
Query: 236 CLDASAKLG 244
L A AK G
Sbjct: 235 ELLAVAKKG 243
>gi|121587563|ref|ZP_01677329.1| ribonuclease PH [Vibrio cholerae 2740-80]
gi|121548201|gb|EAX58271.1| ribonuclease PH [Vibrio cholerae 2740-80]
Length = 229
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 99/227 (43%), Gaps = 22/227 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RPD+R Q RP A GS EFGNTKV+ + PR K K +
Sbjct: 1 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60
Query: 90 SNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L T G QG + ++ ++L + LE + + V V++
Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA-------GIM----MYDLVASVSVSCLGKNLLIDPVLEEE 197
+ G I+ ASVALADA G + M VA+VSV LG+++L D E+
Sbjct: 121 ADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEYVED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLG 244
S D + + M ++ ++ T E P +E + L L A AK G
Sbjct: 181 SAADTDMNV-VMTEEGKMIEIQGTAE-GEPFSHEQL-LELLAVAKKG 224
>gi|161582033|ref|NP_229867.2| ribonuclease PH [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|254851339|ref|ZP_05240689.1| ribonuclease PH [Vibrio cholerae MO10]
gi|255744021|ref|ZP_05417975.1| ribonuclease PH [Vibrio cholera CIRS 101]
gi|262153620|ref|ZP_06028747.1| ribonuclease PH [Vibrio cholerae INDRE 91/1]
gi|360036846|ref|YP_004938609.1| ribonuclease PH [Vibrio cholerae O1 str. 2010EL-1786]
gi|379740100|ref|YP_005332069.1| ribonuclease PH [Vibrio cholerae IEC224]
gi|384423537|ref|YP_005632895.1| Ribonuclease PH [Vibrio cholerae LMA3984-4]
gi|417811284|ref|ZP_12457950.1| ribonuclease PH [Vibrio cholerae HC-49A2]
gi|417815038|ref|ZP_12461679.1| ribonuclease PH [Vibrio cholerae HCUF01]
gi|418330912|ref|ZP_12941872.1| ribonuclease PH [Vibrio cholerae HC-06A1]
gi|418335879|ref|ZP_12944782.1| ribonuclease PH [Vibrio cholerae HC-23A1]
gi|418342451|ref|ZP_12949263.1| ribonuclease PH [Vibrio cholerae HC-28A1]
gi|418347624|ref|ZP_12952362.1| ribonuclease PH [Vibrio cholerae HC-43A1]
gi|418353133|ref|ZP_12955860.1| ribonuclease PH [Vibrio cholerae HC-61A1]
gi|419824688|ref|ZP_14348198.1| ribonuclease PH [Vibrio cholerae CP1033(6)]
gi|419827894|ref|ZP_14351386.1| ribonuclease PH [Vibrio cholerae HC-1A2]
gi|419831554|ref|ZP_14355023.1| ribonuclease PH [Vibrio cholerae HC-61A2]
gi|419835156|ref|ZP_14358604.1| ribonuclease PH [Vibrio cholerae HC-46B1]
gi|421315532|ref|ZP_15766106.1| ribonuclease PH [Vibrio cholerae CP1032(5)]
gi|421319001|ref|ZP_15769563.1| ribonuclease PH [Vibrio cholerae CP1038(11)]
gi|421323039|ref|ZP_15773572.1| ribonuclease PH [Vibrio cholerae CP1041(14)]
gi|421326507|ref|ZP_15777026.1| ribonuclease PH [Vibrio cholerae CP1042(15)]
gi|421330439|ref|ZP_15780924.1| ribonuclease PH [Vibrio cholerae CP1046(19)]
gi|421334033|ref|ZP_15784506.1| ribonuclease PH [Vibrio cholerae CP1048(21)]
gi|421337938|ref|ZP_15788380.1| ribonuclease PH [Vibrio cholerae HC-20A2]
gi|421341886|ref|ZP_15792295.1| ribonuclease PH [Vibrio cholerae HC-43B1]
gi|421345364|ref|ZP_15795752.1| ribonuclease PH [Vibrio cholerae HC-46A1]
gi|422305615|ref|ZP_16392810.1| ribonuclease PH [Vibrio cholerae CP1035(8)]
gi|422890241|ref|ZP_16932681.1| ribonuclease PH [Vibrio cholerae HC-40A1]
gi|422901036|ref|ZP_16936430.1| ribonuclease PH [Vibrio cholerae HC-48A1]
gi|422905207|ref|ZP_16940076.1| ribonuclease PH [Vibrio cholerae HC-70A1]
gi|422911951|ref|ZP_16946489.1| ribonuclease PH [Vibrio cholerae HFU-02]
gi|422915928|ref|ZP_16950282.1| ribonuclease PH [Vibrio cholerae HC-02A1]
gi|422921451|ref|ZP_16954681.1| ribonuclease PH [Vibrio cholerae BJG-01]
gi|422924419|ref|ZP_16957476.1| ribonuclease PH [Vibrio cholerae HC-38A1]
gi|423143479|ref|ZP_17131105.1| ribonuclease PH [Vibrio cholerae HC-19A1]
gi|423148461|ref|ZP_17135831.1| ribonuclease PH [Vibrio cholerae HC-21A1]
gi|423152247|ref|ZP_17139469.1| ribonuclease PH [Vibrio cholerae HC-22A1]
gi|423155039|ref|ZP_17142182.1| ribonuclease PH [Vibrio cholerae HC-32A1]
gi|423158904|ref|ZP_17145882.1| ribonuclease PH [Vibrio cholerae HC-33A2]
gi|423163568|ref|ZP_17150375.1| ribonuclease PH [Vibrio cholerae HC-48B2]
gi|423729578|ref|ZP_17702911.1| ribonuclease PH [Vibrio cholerae HC-17A1]
gi|423733503|ref|ZP_17706733.1| ribonuclease PH [Vibrio cholerae HC-41B1]
gi|423745976|ref|ZP_17711099.1| ribonuclease PH [Vibrio cholerae HC-50A2]
gi|423810996|ref|ZP_17714875.1| ribonuclease PH [Vibrio cholerae HC-55C2]
gi|423846264|ref|ZP_17718648.1| ribonuclease PH [Vibrio cholerae HC-59A1]
gi|423878430|ref|ZP_17722278.1| ribonuclease PH [Vibrio cholerae HC-60A1]
gi|423890192|ref|ZP_17725128.1| ribonuclease PH [Vibrio cholerae HC-62A1]
gi|423924728|ref|ZP_17729741.1| ribonuclease PH [Vibrio cholerae HC-77A1]
gi|423996337|ref|ZP_17739614.1| ribonuclease PH [Vibrio cholerae HC-02C1]
gi|424000752|ref|ZP_17743854.1| ribonuclease PH [Vibrio cholerae HC-17A2]
gi|424004913|ref|ZP_17747910.1| ribonuclease PH [Vibrio cholerae HC-37A1]
gi|424007799|ref|ZP_17750755.1| ribonuclease PH [Vibrio cholerae HC-44C1]
gi|424015043|ref|ZP_17754901.1| ribonuclease PH [Vibrio cholerae HC-55B2]
gi|424018153|ref|ZP_17757965.1| ribonuclease PH [Vibrio cholerae HC-59B1]
gi|424022710|ref|ZP_17762385.1| ribonuclease PH [Vibrio cholerae HC-62B1]
gi|424025728|ref|ZP_17765357.1| ribonuclease PH [Vibrio cholerae HC-69A1]
gi|424585102|ref|ZP_18024708.1| ribonuclease PH [Vibrio cholerae CP1030(3)]
gi|424589468|ref|ZP_18028925.1| ribonuclease PH [Vibrio cholerae CP1037(10)]
gi|424593730|ref|ZP_18033081.1| ribonuclease PH [Vibrio cholerae CP1040(13)]
gi|424597660|ref|ZP_18036871.1| ribonuclease PH [Vibrio Cholerae CP1044(17)]
gi|424600432|ref|ZP_18039600.1| ribonuclease PH [Vibrio cholerae CP1047(20)]
gi|424605340|ref|ZP_18044316.1| ribonuclease PH [Vibrio cholerae CP1050(23)]
gi|424609058|ref|ZP_18047929.1| ribonuclease PH [Vibrio cholerae HC-39A1]
gi|424611973|ref|ZP_18050792.1| ribonuclease PH [Vibrio cholerae HC-41A1]
gi|424615857|ref|ZP_18054561.1| ribonuclease PH [Vibrio cholerae HC-42A1]
gi|424620612|ref|ZP_18059149.1| ribonuclease PH [Vibrio cholerae HC-47A1]
gi|424623531|ref|ZP_18062017.1| ribonuclease PH [Vibrio cholerae HC-50A1]
gi|424628107|ref|ZP_18066426.1| ribonuclease PH [Vibrio cholerae HC-51A1]
gi|424632053|ref|ZP_18070183.1| ribonuclease PH [Vibrio cholerae HC-52A1]
gi|424635143|ref|ZP_18073175.1| ribonuclease PH [Vibrio cholerae HC-55A1]
gi|424638963|ref|ZP_18076870.1| ribonuclease PH [Vibrio cholerae HC-56A1]
gi|424643428|ref|ZP_18081195.1| ribonuclease PH [Vibrio cholerae HC-56A2]
gi|424647220|ref|ZP_18084908.1| ribonuclease PH [Vibrio cholerae HC-57A1]
gi|424651356|ref|ZP_18088891.1| ribonuclease PH [Vibrio cholerae HC-57A2]
gi|424655309|ref|ZP_18092620.1| ribonuclease PH [Vibrio cholerae HC-81A2]
gi|429888133|ref|ZP_19369626.1| Ribonuclease PH [Vibrio cholerae PS15]
gi|440712143|ref|ZP_20892768.1| ribonuclease PH [Vibrio cholerae 4260B]
gi|443502260|ref|ZP_21069262.1| ribonuclease PH [Vibrio cholerae HC-64A1]
gi|443506160|ref|ZP_21072968.1| ribonuclease PH [Vibrio cholerae HC-65A1]
gi|443509998|ref|ZP_21076681.1| ribonuclease PH [Vibrio cholerae HC-67A1]
gi|443513840|ref|ZP_21080394.1| ribonuclease PH [Vibrio cholerae HC-68A1]
gi|443517644|ref|ZP_21084079.1| ribonuclease PH [Vibrio cholerae HC-71A1]
gi|443522233|ref|ZP_21088492.1| ribonuclease PH [Vibrio cholerae HC-72A2]
gi|443526090|ref|ZP_21092192.1| ribonuclease PH [Vibrio cholerae HC-78A1]
gi|443529165|ref|ZP_21095186.1| ribonuclease PH [Vibrio cholerae HC-7A1]
gi|443533903|ref|ZP_21099835.1| ribonuclease PH [Vibrio cholerae HC-80A1]
gi|443540095|ref|ZP_21105946.1| ribonuclease PH [Vibrio cholerae HC-81A1]
gi|449054592|ref|ZP_21733260.1| Ribonuclease PH [Vibrio cholerae O1 str. Inaba G4222]
gi|21759419|sp|Q9KVD6.2|RNPH_VIBCH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|254847044|gb|EET25458.1| ribonuclease PH [Vibrio cholerae MO10]
gi|255738286|gb|EET93677.1| ribonuclease PH [Vibrio cholera CIRS 101]
gi|262030561|gb|EEY49198.1| ribonuclease PH [Vibrio cholerae INDRE 91/1]
gi|327483090|gb|AEA77497.1| Ribonuclease PH [Vibrio cholerae LMA3984-4]
gi|340045427|gb|EGR06370.1| ribonuclease PH [Vibrio cholerae HCUF01]
gi|340045984|gb|EGR06920.1| ribonuclease PH [Vibrio cholerae HC-49A2]
gi|341626496|gb|EGS51885.1| ribonuclease PH [Vibrio cholerae HC-70A1]
gi|341628188|gb|EGS53463.1| ribonuclease PH [Vibrio cholerae HC-48A1]
gi|341628493|gb|EGS53739.1| ribonuclease PH [Vibrio cholerae HC-40A1]
gi|341641625|gb|EGS66150.1| ribonuclease PH [Vibrio cholerae HC-02A1]
gi|341641819|gb|EGS66338.1| ribonuclease PH [Vibrio cholerae HFU-02]
gi|341648900|gb|EGS72915.1| ribonuclease PH [Vibrio cholerae BJG-01]
gi|341649103|gb|EGS73104.1| ribonuclease PH [Vibrio cholerae HC-38A1]
gi|356422727|gb|EHH76198.1| ribonuclease PH [Vibrio cholerae HC-06A1]
gi|356423445|gb|EHH76896.1| ribonuclease PH [Vibrio cholerae HC-21A1]
gi|356427556|gb|EHH80804.1| ribonuclease PH [Vibrio cholerae HC-19A1]
gi|356434261|gb|EHH87442.1| ribonuclease PH [Vibrio cholerae HC-23A1]
gi|356435792|gb|EHH88941.1| ribonuclease PH [Vibrio cholerae HC-22A1]
gi|356438571|gb|EHH91586.1| ribonuclease PH [Vibrio cholerae HC-28A1]
gi|356444298|gb|EHH97109.1| ribonuclease PH [Vibrio cholerae HC-32A1]
gi|356448345|gb|EHI01117.1| ribonuclease PH [Vibrio cholerae HC-43A1]
gi|356451154|gb|EHI03856.1| ribonuclease PH [Vibrio cholerae HC-33A2]
gi|356455326|gb|EHI07969.1| ribonuclease PH [Vibrio cholerae HC-61A1]
gi|356456765|gb|EHI09350.1| ribonuclease PH [Vibrio cholerae HC-48B2]
gi|356648000|gb|AET28055.1| ribonuclease PH [Vibrio cholerae O1 str. 2010EL-1786]
gi|378793610|gb|AFC57081.1| ribonuclease PH [Vibrio cholerae IEC224]
gi|395923021|gb|EJH33834.1| ribonuclease PH [Vibrio cholerae CP1032(5)]
gi|395924359|gb|EJH35162.1| ribonuclease PH [Vibrio cholerae CP1041(14)]
gi|395926277|gb|EJH37065.1| ribonuclease PH [Vibrio cholerae CP1038(11)]
gi|395934838|gb|EJH45575.1| ribonuclease PH [Vibrio cholerae CP1042(15)]
gi|395936126|gb|EJH46855.1| ribonuclease PH [Vibrio cholerae CP1046(19)]
gi|395938096|gb|EJH48794.1| ribonuclease PH [Vibrio cholerae CP1048(21)]
gi|395947063|gb|EJH57721.1| ribonuclease PH [Vibrio cholerae HC-43B1]
gi|395947112|gb|EJH57769.1| ribonuclease PH [Vibrio cholerae HC-20A2]
gi|395948734|gb|EJH59372.1| ribonuclease PH [Vibrio cholerae HC-46A1]
gi|395964765|gb|EJH74962.1| ribonuclease PH [Vibrio cholerae HC-56A2]
gi|395964975|gb|EJH75163.1| ribonuclease PH [Vibrio cholerae HC-57A2]
gi|395967735|gb|EJH77785.1| ribonuclease PH [Vibrio cholerae HC-42A1]
gi|395976632|gb|EJH86075.1| ribonuclease PH [Vibrio cholerae HC-47A1]
gi|395979417|gb|EJH88768.1| ribonuclease PH [Vibrio cholerae CP1030(3)]
gi|395980006|gb|EJH89315.1| ribonuclease PH [Vibrio cholerae CP1047(20)]
gi|408011196|gb|EKG49026.1| ribonuclease PH [Vibrio cholerae HC-39A1]
gi|408017275|gb|EKG54790.1| ribonuclease PH [Vibrio cholerae HC-50A1]
gi|408018046|gb|EKG55516.1| ribonuclease PH [Vibrio cholerae HC-41A1]
gi|408022786|gb|EKG59979.1| ribonuclease PH [Vibrio cholerae HC-52A1]
gi|408028183|gb|EKG65094.1| ribonuclease PH [Vibrio cholerae HC-56A1]
gi|408028467|gb|EKG65358.1| ribonuclease PH [Vibrio cholerae HC-55A1]
gi|408037470|gb|EKG73865.1| ribonuclease PH [Vibrio cholerae CP1037(10)]
gi|408038262|gb|EKG74614.1| ribonuclease PH [Vibrio cholerae CP1040(13)]
gi|408038287|gb|EKG74638.1| ribonuclease PH [Vibrio cholerae HC-57A1]
gi|408045714|gb|EKG81520.1| ribonuclease PH [Vibrio Cholerae CP1044(17)]
gi|408047562|gb|EKG83175.1| ribonuclease PH [Vibrio cholerae CP1050(23)]
gi|408058122|gb|EKG92942.1| ribonuclease PH [Vibrio cholerae HC-81A2]
gi|408059856|gb|EKG94597.1| ribonuclease PH [Vibrio cholerae HC-51A1]
gi|408612342|gb|EKK85685.1| ribonuclease PH [Vibrio cholerae CP1033(6)]
gi|408624258|gb|EKK97207.1| ribonuclease PH [Vibrio cholerae HC-1A2]
gi|408628402|gb|EKL01155.1| ribonuclease PH [Vibrio cholerae HC-17A1]
gi|408628417|gb|EKL01169.1| ribonuclease PH [Vibrio cholerae CP1035(8)]
gi|408632275|gb|EKL04740.1| ribonuclease PH [Vibrio cholerae HC-41B1]
gi|408637272|gb|EKL09341.1| ribonuclease PH [Vibrio cholerae HC-55C2]
gi|408644464|gb|EKL16149.1| ribonuclease PH [Vibrio cholerae HC-50A2]
gi|408644886|gb|EKL16559.1| ribonuclease PH [Vibrio cholerae HC-60A1]
gi|408646165|gb|EKL17786.1| ribonuclease PH [Vibrio cholerae HC-59A1]
gi|408652441|gb|EKL23656.1| ribonuclease PH [Vibrio cholerae HC-61A2]
gi|408659869|gb|EKL30902.1| ribonuclease PH [Vibrio cholerae HC-77A1]
gi|408660769|gb|EKL31771.1| ribonuclease PH [Vibrio cholerae HC-62A1]
gi|408850074|gb|EKL90060.1| ribonuclease PH [Vibrio cholerae HC-37A1]
gi|408850403|gb|EKL90367.1| ribonuclease PH [Vibrio cholerae HC-17A2]
gi|408855327|gb|EKL95034.1| ribonuclease PH [Vibrio cholerae HC-02C1]
gi|408859297|gb|EKL98958.1| ribonuclease PH [Vibrio cholerae HC-46B1]
gi|408862586|gb|EKM02093.1| ribonuclease PH [Vibrio cholerae HC-55B2]
gi|408867656|gb|EKM07012.1| ribonuclease PH [Vibrio cholerae HC-44C1]
gi|408871274|gb|EKM10517.1| ribonuclease PH [Vibrio cholerae HC-59B1]
gi|408875938|gb|EKM15075.1| ribonuclease PH [Vibrio cholerae HC-62B1]
gi|408882295|gb|EKM21135.1| ribonuclease PH [Vibrio cholerae HC-69A1]
gi|429224792|gb|EKY31110.1| Ribonuclease PH [Vibrio cholerae PS15]
gi|439972153|gb|ELP48450.1| ribonuclease PH [Vibrio cholerae 4260B]
gi|443433420|gb|ELS75928.1| ribonuclease PH [Vibrio cholerae HC-64A1]
gi|443437250|gb|ELS83349.1| ribonuclease PH [Vibrio cholerae HC-65A1]
gi|443441083|gb|ELS90753.1| ribonuclease PH [Vibrio cholerae HC-67A1]
gi|443444895|gb|ELS98154.1| ribonuclease PH [Vibrio cholerae HC-68A1]
gi|443448749|gb|ELT05366.1| ribonuclease PH [Vibrio cholerae HC-71A1]
gi|443451794|gb|ELT12039.1| ribonuclease PH [Vibrio cholerae HC-72A2]
gi|443455557|gb|ELT19322.1| ribonuclease PH [Vibrio cholerae HC-78A1]
gi|443460008|gb|ELT27398.1| ribonuclease PH [Vibrio cholerae HC-7A1]
gi|443462952|gb|ELT33971.1| ribonuclease PH [Vibrio cholerae HC-80A1]
gi|443464382|gb|ELT39045.1| ribonuclease PH [Vibrio cholerae HC-81A1]
gi|448265738|gb|EMB02971.1| Ribonuclease PH [Vibrio cholerae O1 str. Inaba G4222]
Length = 238
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 99/227 (43%), Gaps = 22/227 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RPD+R Q RP A GS EFGNTKV+ + PR K K +
Sbjct: 1 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60
Query: 90 SNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L T G QG + ++ ++L + LE + + V V++
Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA-------GIM----MYDLVASVSVSCLGKNLLIDPVLEEE 197
+ G I+ ASVALADA G + M VA+VSV LG+++L D E+
Sbjct: 121 ADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEYVED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLG 244
S D + + M ++ ++ T E P +E + L L A AK G
Sbjct: 181 SAADTDMNV-VMTEEGKMIEIQGTAE-GEPFSHEQL-LELLAVAKKG 224
>gi|424658108|ref|ZP_18095376.1| ribonuclease PH [Vibrio cholerae HE-16]
gi|408056676|gb|EKG91552.1| ribonuclease PH [Vibrio cholerae HE-16]
Length = 238
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 99/227 (43%), Gaps = 22/227 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RPD+R Q RP A GS EFGNTKV+ + PR K K +
Sbjct: 1 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60
Query: 90 SNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L T G QG + ++ ++L + LE + + V V++
Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA-------GIM----MYDLVASVSVSCLGKNLLIDPVLEEE 197
+ G I+ ASVALADA G + M VA+VSV LG+++L D E+
Sbjct: 121 ADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEYVED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLG 244
S D + + M ++ ++ T E P +E + L L A AK G
Sbjct: 181 SAADTDMNV-VMTEEGKMIEIQGTAE-GDPFSHEQL-LELLAVAKKG 224
>gi|225848159|ref|YP_002728322.1| ribonuclease PH [Sulfurihydrogenibium azorense Az-Fu1]
gi|225644653|gb|ACN99703.1| ribonuclease PH [Sulfurihydrogenibium azorense Az-Fu1]
Length = 257
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 97/220 (44%), Gaps = 22/220 (10%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RPD+R Q RP A GS EFGNTKVIV+ + + S G +
Sbjct: 1 MRPDNRKPAQLRPIKITRDFNIYAEGSVLIEFGNTKVIVTASIEDKVPPFLKGSGQGWIT 60
Query: 97 CNVSYTTFATP-------VRG--QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVL 147
S A+ VRG G H + ++ ++L A+ L+ + T+ + V+
Sbjct: 61 AEYSMIPRASETRSLREVVRGSPSGRTH-EIQRLIGRSLRAAVDLKKLGERTIWIDCDVI 119
Query: 148 ESGGSDLPVVISCASVALADAGIM-----------MYDLVASVSVSCLGKNLLIDPVLEE 196
++ G I+ A +A+ADA I + D VA++SV + +++D +E
Sbjct: 120 QADGGTRVASITGAFIAVADALIKLEKNNLVKSNPLKDYVAAISVGKVNNEIVLDLNYQE 179
Query: 197 ESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLC 236
+S + I M + E +L TGE +T + E ++
Sbjct: 180 DSKAQVDMNI-VMTGKGEFVELGATGEENTFTYQELQKMI 218
>gi|71747850|ref|XP_822980.1| exosome complex exonuclease RRP41A [Trypanosoma brucei TREU927]
gi|70832648|gb|EAN78152.1| exosome complex exonuclease RRP41A [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 252
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 5/175 (2%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRL 95
LR D R ++ R G ++ G G + V +V+GPRE S + N +
Sbjct: 13 LRLDGRRPNEPRRLALEFGKISGCDGCCTVVSGLSHVCATVYGPREVSNRLEGKYNEVTI 72
Query: 96 NCNVSYTTFATPVRGQGSDH----KDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
C+V FA R + + +D S+ + ++L +P + + + VL+ G
Sbjct: 73 TCDVVVAAFAGERRREQQRYSRLSEDISASVLDVARSVVLLSQYPNSQIHICIEVLKQDG 132
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMI 206
SD I+ A +AL DA I M D+V + +V + ++D EE Q S+ I
Sbjct: 133 SDKAACINAACLALIDASIAMKDVVYTQTVGLIEGFDVVDLTTEEIHSQCPSICI 187
>gi|299534733|ref|ZP_07048063.1| polynucleotide phosphorylase/polyadenylase [Lysinibacillus
fusiformis ZC1]
gi|424737096|ref|ZP_18165552.1| polynucleotide phosphorylase/polyadenylase [Lysinibacillus
fusiformis ZB2]
gi|298729821|gb|EFI70366.1| polynucleotide phosphorylase/polyadenylase [Lysinibacillus
fusiformis ZC1]
gi|422948928|gb|EKU43304.1| polynucleotide phosphorylase/polyadenylase [Lysinibacillus
fusiformis ZB2]
Length = 704
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 80/190 (42%), Gaps = 20/190 (10%)
Query: 10 TAKATYSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFG 69
T K Y+ +D + + + D +RPD R + RP TG + GS G
Sbjct: 289 TMKQVYTILD--KMVKEEVRRQITEDKIRPDGRKLDEIRPLSSETGLLQRTHGSGLFTRG 346
Query: 70 NTKV-------------IVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHK 116
T+ I+ G ESK+ M + N + + + P+RG G
Sbjct: 347 QTQALSICTLGALGDVQIIDGLGVEESKRFMHHYNFPQFSVGET-----GPIRGPGRREI 401
Query: 117 DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLV 176
++ +ALE I E+ T+ + VLES GS I +++A+ DAG+ + V
Sbjct: 402 GHGALGERALEAVIPDESIFPYTIRCVSEVLESNGSTSQASICASTLAMMDAGVPLKAPV 461
Query: 177 ASVSVSCLGK 186
A +++ + K
Sbjct: 462 AGIAMGLIKK 471
>gi|317029576|ref|XP_001391907.2| exosome complex endonuclease 1 [Aspergillus niger CBS 513.88]
gi|350635872|gb|EHA24233.1| hypothetical protein ASPNIDRAFT_39724 [Aspergillus niger ATCC 1015]
gi|358368844|dbj|GAA85460.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Aspergillus kawachii IFO 4308]
Length = 269
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 73/150 (48%), Gaps = 10/150 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK-------AMMY 89
LR D R +++ R + ++SGS+Y GNT ++ SV GP E ++ A
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLAMGNTAILCSVHGPAEGRRGDATGGAAGSA 73
Query: 90 SNIGRLNCNVS-YTTFATPVRGQGSDHKD--FSSMLHKALEGAIILETFPKTTVDVFALV 146
+ ++ NV+ + R GSD + +++L A + + +P +T+ + V
Sbjct: 74 GAVVEVDVNVAGFAGVDRKRRAGGSDKQSSRVATILRSAFQSHLHTHLYPHSTISIHVSV 133
Query: 147 LESGGSDLPVVISCASVALADAGIMMYDLV 176
L S GS L ++ ++AL DAGI M L+
Sbjct: 134 LSSDGSLLAAAVNACTLALVDAGIPMPGLL 163
>gi|344302854|gb|EGW33128.1| hypothetical protein SPAPADRAFT_136405 [Spathaspora passalidarum
NRRL Y-27907]
Length = 219
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 87/212 (41%), Gaps = 18/212 (8%)
Query: 53 RTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG-Q 111
+ ++++ GSA GNTKVI SV GP E K+ N S P +G
Sbjct: 6 QMSVLDNSDGSAELIIGNTKVIASVSGPIEPKQRQELPN------QASLEIIIRPAKGLS 59
Query: 112 GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESG------GSDLPVVISCASVAL 165
+ K L L+ II +P+ + + L + ++L I+C AL
Sbjct: 60 TTREKLLEDKLRALLQSIIIRYKYPRQLISIVVQFLVTDEDPKFTANELNAAINCCYFAL 119
Query: 166 ADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRY----EVTQLTVT 221
DA I +Y ASV VSC+ +N LI +E Q S + C + ++ L
Sbjct: 120 IDADIALYSSFASV-VSCITENKLIQNPTGKELSQSDSHHVVCFNIQEGKADKILLLESQ 178
Query: 222 GEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
GE+ + + + +L + R LKE
Sbjct: 179 GEFVQEELFNLLSESVSNAEELHTLQRKYLKE 210
>gi|119482067|ref|XP_001261062.1| 3' exoribonuclease family protein [Neosartorya fischeri NRRL 181]
gi|119409216|gb|EAW19165.1| 3' exoribonuclease family protein [Neosartorya fischeri NRRL 181]
Length = 320
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 109/262 (41%), Gaps = 59/262 (22%)
Query: 20 PTRKTRPPIFSGS-----DVDWLRPD-SRGFHQCRPAFFRTGAVNSASGSAYAEF----- 68
P TRP +F+ S D RP R ++ R F +TG + SASGS+Y EF
Sbjct: 10 PPSGTRPVVFASSLKSTTDTASGRPQRQRQPNELRKIFLKTGLIPSASGSSYLEFEPSAS 69
Query: 69 ---------------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG--- 110
K+ +V GP+ ++ +S L +V Y FA R
Sbjct: 70 LAAARSSPQSLIPPSSALKLACTVHGPKPLPRSATFSPNLVLTTHVKYAPFAARRRKGHI 129
Query: 111 QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES----------GGSDLP----- 155
+ + +D L AL G I+ E +PK+ +D+ +LE+ D P
Sbjct: 130 RDTSERDLGVHLETALRGVIVAERWPKSGLDITITILEAEDDRWWGDAPDSHDAPWGMMN 189
Query: 156 VVISCASVALADAG---IMMYDLVASVSVSCL-------GKNLLIDPVLEEESYQDGSLM 205
V+ C + A A I DLVA V+ L G+ +L+ + + S++
Sbjct: 190 VLAGCITAASAAIADARIDCLDLVAG-GVAALVSDELPEGERSAPKLMLDTDPAEHRSIL 248
Query: 206 IAC----MPSRYEVTQLTVTGE 223
AC MPSR E+T++ + G+
Sbjct: 249 SACVVAYMPSRDEITEIWLKGD 270
>gi|326473180|gb|EGD97189.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Trichophyton tonsurans CBS 112818]
Length = 286
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 13/171 (7%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R +++ R + ++SGS+Y GNT V+ +V GP E K++ G
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKRS---ETAGAAA 70
Query: 97 CNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSD 153
TT + G D + + ++ L A + I +P++T+ V VL S GS
Sbjct: 71 QKKKSTTGS-----GGGDRQATTELANSLRDAFQPHIHAHLYPRSTISVHVSVLSSDGSL 125
Query: 154 LPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSL 204
++ ++AL DAGI M L+ + +V G+ P + ES Q G +
Sbjct: 126 FAACLNACTLALVDAGIPMPGLLCACTVGMSGR--ASTPAVTAESAQIGGI 174
>gi|261332827|emb|CBH15822.1| RRP41p homologue, putative [Trypanosoma brucei gambiense DAL972]
Length = 252
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 79/176 (44%), Gaps = 7/176 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAM--MYSNIGR 94
LR D R ++ R G ++ G G + V +V+GPRE + Y+ +
Sbjct: 13 LRLDGRRPNEPRRLALEFGKISGCDGCCTVVSGLSHVCATVYGPREVSNRLDGKYNEVT- 71
Query: 95 LNCNVSYTTFATPVRGQGSDH----KDFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ C+V FA R + + +D S+ + ++L +P + + + VL+
Sbjct: 72 ITCDVVVAAFAGERRREQQRYSRLSEDISASVLDVARSVVLLSQYPNSQIHICIEVLKQD 131
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMI 206
GSD I+ A +AL DA I M D+V + +V + ++D EE Q S+ I
Sbjct: 132 GSDKAACINAACLALIDASIAMRDVVYTQTVGLIEGFDVVDLTTEEIHSQCPSICI 187
>gi|67523393|ref|XP_659757.1| hypothetical protein AN2153.2 [Aspergillus nidulans FGSC A4]
gi|40745041|gb|EAA64197.1| hypothetical protein AN2153.2 [Aspergillus nidulans FGSC A4]
gi|259487532|tpe|CBF86279.1| TPA: 3' exoribonuclease family protein (AFU_orthologue;
AFUA_2G15980) [Aspergillus nidulans FGSC A4]
Length = 324
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 38/164 (23%)
Query: 20 PTRKTRPPIFSGSDVDWLRPDS-----------RGFHQCRPAFFRTGAVNSASGSAYAEF 68
P TRPPIF+ S ++P + R ++ R F +TG + SASGS+Y EF
Sbjct: 10 PPGGTRPPIFASS----IKPTATATAAERPQRQRQPNELRKIFLKTGLIPSASGSSYLEF 65
Query: 69 --------------------GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPV 108
+ K+ +V GP+ ++ +S L +V Y FA
Sbjct: 66 EPSASLSAARASPKFITPPSSSLKLACTVHGPKPLPRSATFSPNLVLTTHVKYAPFAARK 125
Query: 109 RG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
R + + +D L AL G I+ E +PK+ +D+ +LE+
Sbjct: 126 RKGHIRDASERDLGVHLETALRGVIVAERWPKSGLDITITILEA 169
>gi|163802281|ref|ZP_02196176.1| ribonuclease PH [Vibrio sp. AND4]
gi|159174086|gb|EDP58896.1| ribonuclease PH [Vibrio sp. AND4]
Length = 238
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 98/227 (43%), Gaps = 22/227 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RP+ R Q RP A GS EFGNTKV+ V PR K K +
Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 60
Query: 90 SNIGRL-NCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L S T QG + ++ ++L + L+ + V V V++
Sbjct: 61 AEYGMLPRATHSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMVTVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADAGIMMYD-----------LVASVSVSCLGKNLLIDPVLEEE 197
+ G IS ASVA+ADA + D VA+VSV LG+++L D E+
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLLGEDVLCDLEYVED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLG 244
S D + + M ++ ++ T E P +E + L+ SAK+G
Sbjct: 181 SAADTDMNV-VMTEEGKMIEIQGTAE-GEPFSHEQLMALLE-SAKIG 224
>gi|195629840|gb|ACG36561.1| exosome complex exonuclease RRP46 [Zea mays]
Length = 240
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 72/175 (41%), Gaps = 7/175 (4%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R +Q RP ++ A GSA G+T V+ +V+GP+ + G
Sbjct: 7 RADGRNPNQLRPFTCTGNPLHRAHGSARWAQGDTVVLAAVYGPKPGTRK------GENPE 60
Query: 98 NVSYTTFATPVRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPV 156
S P GQ G +++ L + L+ +L P TT V V+ GS +
Sbjct: 61 KASIEVVWKPKTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQVVGDDGSLMSC 120
Query: 157 VISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS 211
I+ + ALA AGI M L ++S + ++I E Q S P+
Sbjct: 121 AINASCAALAFAGIPMKHLAVAISCGVMDNGVVILDTSRAEEQQARSFAHLVFPN 175
>gi|320104995|ref|YP_004180586.1| polyribonucleotide nucleotidyltransferase [Isosphaera pallida ATCC
43644]
gi|319752277|gb|ADV64037.1| polyribonucleotide nucleotidyltransferase [Isosphaera pallida ATCC
43644]
Length = 766
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 112/266 (42%), Gaps = 27/266 (10%)
Query: 5 PSTTTTAKATYSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSA 64
P T KA + + TR R I G LR D RG RP G + A GSA
Sbjct: 304 PPTELAVKAAFKEAE-TRVVRAMILDG-----LRSDGRGPKDLRPISCEVGLLPKAHGSA 357
Query: 65 YAEFGNTKVIVS-VFGPRESKK---AMMYSNIGRLNCNVSYTTFAT----PVRGQGSDHK 116
+ G T+ +V+ V G ++ +M + + + +FA P+RG G
Sbjct: 358 LFQRGETQALVTTVLGTAADEQRIDGIMDEYTKKFMLDYNMPSFAVGEVRPIRGPGRREI 417
Query: 117 DFSSMLHKALEGAIIL---ETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMY 173
++ +++ A +L FP T+ V + +LES GS + A+++L DAG+ +
Sbjct: 418 GHGALAERSV--APVLPDPARFP-YTIRVVSDILESNGSSSMASVCGATLSLMDAGVPIS 474
Query: 174 DLVASVSVSCLGKN------LLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTP 227
D V +S+ + LL D + +E+ Y D +A QL + +P
Sbjct: 475 DPVGGISIGLVWDEPTDRFVLLTDIIGDEDHYGDMDFKVAGTQRGVTGIQLDLKNLGISP 534
Query: 228 HF-NEAMQLCLDASAKLGKIMRSCLK 252
E + L+A ++ + M +K
Sbjct: 535 RIVRETLDQALEARMEILRTMLRSIK 560
>gi|407849042|gb|EKG03905.1| exosome complex exonuclease RRP41A, putative [Trypanosoma cruzi]
Length = 252
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 72/176 (40%), Gaps = 5/176 (2%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRL 95
LR D R + R G V G G V SV+GPRE + + N +
Sbjct: 13 LRLDGRRPQESRRMTLEFGKVLGCDGCCTVMSGLATVCASVYGPREVTNRLESKYNECII 72
Query: 96 NCNVSYTTFATPVRGQGSDHKDFSSMLHKAL----EGAIILETFPKTTVDVFALVLESGG 151
C V+ FA R S + A+ ++L +P + + + VL G
Sbjct: 73 TCEVAIAAFAGEKRRAPQRRSKLSEEMSAAVLEVARSVVLLSQYPNSQIHICVEVLRQDG 132
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIA 207
SD I+ A +AL DA + M D+V + +V + ++D EE Q ++ IA
Sbjct: 133 SDKAACINAACLALVDASVAMRDIVYAQTVGLIHAVDVVDLTTEEMRSQCPTICIA 188
>gi|340793697|ref|YP_004759160.1| ribonuclease PH [Corynebacterium variabile DSM 44702]
gi|340533607|gb|AEK36087.1| ribonuclease PH [Corynebacterium variabile DSM 44702]
Length = 256
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 103/240 (42%), Gaps = 25/240 (10%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGP---RESKKAM 87
D+ R D R + RP G + +GS EFGNT+V+ VS P R+S +
Sbjct: 5 DYTRFDGRAVDELRPVRITRGFTTNPAGSVLVEFGNTRVMCTASVSEGVPRFKRDSGEGW 64
Query: 88 MYSNIGRLNCNVSYTTFATPVRG--QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFAL 145
+ + L + ++G +G H + S ++ ++L A+ L + TV++
Sbjct: 65 LTAEYAMLPSATAERMPREALKGKVKGRTH-EISRLIGRSLRAAVDLRALGENTVNIDCD 123
Query: 146 VLESGGSDLPVVISCASVALADA-----------GIMMYDLVASVSVSCLGKNLLIDPVL 194
VL++ G I+ A VALADA G + D VA+VSV + +D
Sbjct: 124 VLQADGGTRTASITGAYVALADALAVLQQRGVVPGEPLLDPVAAVSVGVIDGVPCLDLPY 183
Query: 195 EEESYQDGSLMIACMPSRYEVTQLTVTG---EWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
E+S D + + M + ++ TG E+S NE + L L + R+ L
Sbjct: 184 PEDSRADVDMNV-VMTAEGRFVEIQGTGEHAEFSRSELNELLDLAEGGLYDLVDLQRAAL 242
>gi|164428624|ref|XP_964355.2| hypothetical protein NCU00812 [Neurospora crassa OR74A]
gi|157072219|gb|EAA35119.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 257
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 99/242 (40%), Gaps = 45/242 (18%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-------------- 82
LR D R +++ R + +A GS+Y E G+TKV+ V GP E
Sbjct: 13 LRVDGRRWNELRRIHAQIRTQAAADGSSYLEMGHTKVMCVVNGPSEPGPRRGATSGGGGG 72
Query: 83 ---SKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTT 139
SK A + NI +++ RG+G + LH L FP +T
Sbjct: 73 GGQSKNAEVAVNI----VIAGFSSVDRKRRGRGDN-------LHTHL--------FPHST 113
Query: 140 VDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCL--------GKNLLID 191
+++ VL GS L +I+ A++A DAGI M D VA+ + G + L+D
Sbjct: 114 INISLHVLSQDGSLLAALINAATLACVDAGIPMTDYVAACTAGSTSTYAANDEGADPLLD 173
Query: 192 PVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
+EE G L +A + V L + + +D ++ +I+ +
Sbjct: 174 MNHQEEQELPG-LTVATLGDSDRVAVLVCESRVQVSRLEGMLAVGVDGCKQVREILDRVV 232
Query: 252 KE 253
+E
Sbjct: 233 RE 234
>gi|388602615|ref|ZP_10161011.1| ribonuclease PH [Vibrio campbellii DS40M4]
gi|444428313|ref|ZP_21223652.1| ribonuclease PH [Vibrio campbellii CAIM 519 = NBRC 15631]
gi|444238459|gb|ELU50064.1| ribonuclease PH [Vibrio campbellii CAIM 519 = NBRC 15631]
Length = 238
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 97/227 (42%), Gaps = 22/227 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RP+ R Q RP A GS EFGNTKV+ V PR K K +
Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 60
Query: 90 SNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L T G QG + ++ ++L + L+ + + V V++
Sbjct: 61 AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADAGIMMYD-----------LVASVSVSCLGKNLLIDPVLEEE 197
+ G IS ASVA+ADA + D VA+VSV LG ++L D E+
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLLGDDVLCDLEYVED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLG 244
S D + + M ++ ++ T E P +E + L+ SAK+G
Sbjct: 181 SAADTDMNV-VMTEEGKMIEIQGTAE-GEPFSHEQLMALLE-SAKIG 224
>gi|110638186|ref|YP_678395.1| polynucleotide phosphorylase/polyadenylase [Cytophaga hutchinsonii
ATCC 33406]
gi|123058787|sp|Q11U61.1|PNP_CYTH3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|110280867|gb|ABG59053.1| polyribonucleotide nucleotidyltransferase [Cytophaga hutchinsonii
ATCC 33406]
Length = 717
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 85/175 (48%), Gaps = 13/175 (7%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV-FGPRESKKAM---MYSNIG 93
R D R Q RP + G + SA GSA G T+ + +V FG R ++ + M+S
Sbjct: 322 RLDGRSLEQIRPIWSEVGYLPSAHGSAIFTRGETQSLTTVTFGTRLDEQMIDSAMFSGNN 381
Query: 94 RLNCNVSYTTFAT----PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+L + ++ F+T P RG G ++ ++A++ + E T+ + + +LES
Sbjct: 382 KLMLHYNFPGFSTGEVKPNRGPGRREVGHGNLAYRAIKKVMPPEIENPYTIRIVSDILES 441
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCL-----GKNLLIDPVLEEESY 199
GS + ++AL DAGI + V+ +++ + G+ ++ +L +E +
Sbjct: 442 NGSSSMATVCAGTLALMDAGIKIKAPVSGIAMGLITDTKTGRWAVLSDILGDEDH 496
>gi|337291437|ref|YP_004630458.1| ribonuclease PH [Corynebacterium ulcerans BR-AD22]
gi|397654621|ref|YP_006495304.1| ribonuclease PH [Corynebacterium ulcerans 0102]
gi|334699743|gb|AEG84539.1| ribonuclease PH [Corynebacterium ulcerans BR-AD22]
gi|393403577|dbj|BAM28069.1| ribonuclease PH [Corynebacterium ulcerans 0102]
Length = 244
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 100/228 (43%), Gaps = 24/228 (10%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
++ R D R Q R G + +GS EFGNT+V+ + + S G
Sbjct: 5 NFKRADGRAVDQMRTVKITRGFTTNPAGSVLVEFGNTRVMCTASAEIGVPRFKRDSGEGW 64
Query: 95 LNCNVSYTTFAT-------PVRG--QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFAL 145
L + AT +RG +G H + S ++ ++L A+ L + T+++
Sbjct: 65 LTAEYAMLPAATLDRNPRESMRGKVKGRTH-EISRLIGRSLRAAVDLSELGENTINIDCD 123
Query: 146 VLESGGSDLPVVISCASVALADA-----------GIMMYDLVASVSVSCLGKNLLIDPVL 194
VL++ G I+ A VALADA G + D VA+VSV + + +D
Sbjct: 124 VLQADGGTRTASITGAYVALADAIAHLQEQGVVPGNPLKDPVAAVSVGVIDGTVCLDLPY 183
Query: 195 EEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAK 242
EE+S D + + R+ ++ TGE +T +E ++ LD + K
Sbjct: 184 EEDSRADVDMNVIMQSGRF--VEIQGTGEHNTFDRDELARI-LDFAEK 228
>gi|238879722|gb|EEQ43360.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 260
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 44/171 (25%)
Query: 49 PAFF-RTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC---------- 97
P+FF + +++A+GSAY E NT + VS+FGPR + + + ++C
Sbjct: 39 PSFFLKHSIIDNANGSAYLEINNTIIEVSIFGPRPIRGSFIDRASVSVDCKFLPHIIQPM 98
Query: 98 ------------------NVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTT 139
N Y T + +HK SS L + ++ILE +PK+T
Sbjct: 99 ASIFNDTTTSGGGGISSSNRGYRTGMNNI-----EHK-LSSYLETCVLSSLILEKYPKST 152
Query: 140 VDVFALVL----ESGGSDLPVVIS-----CASVALADAGIMMYDLVASVSV 181
+D+ ++ E GG + +S C S+AL D+GI M D+++S V
Sbjct: 153 IDIQVSIISIDKEIGGGHSLLWLSQWITCCCSLALVDSGIEMKDIISSGQV 203
>gi|322703951|gb|EFY95552.1| exosome complex exonuclease RRP41 [Metarhizium anisopliae ARSEF 23]
Length = 273
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 14/156 (8%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI---- 92
LR D R +++ R + ++A GS+Y E G+TKV+ V GP E ++A +
Sbjct: 13 LRVDGRRWNELRRLHAQIRTQDAADGSSYFEMGHTKVMCVVTGPSEQQQAQAQAQRRGGQ 72
Query: 93 --GR----LNCNVSYTTFATPVRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDV 142
GR + NV F++ R + SD + + + KAL + FP +++ V
Sbjct: 73 APGRDAASIIVNVVIAGFSSVDRKKRARSDKRTQEIEITIAKALSSTVHTHLFPHSSITV 132
Query: 143 FALVLESGGSDLPVVISCASVALADAGIMMYDLVAS 178
VL GS L +I+ A++A+ DAGI M D +A+
Sbjct: 133 SLHVLSQDGSLLAALINAATLAVIDAGIPMTDYIAA 168
>gi|312622695|ref|YP_004024308.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
kronotskyensis 2002]
gi|312203162|gb|ADQ46489.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
kronotskyensis 2002]
Length = 701
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 103/240 (42%), Gaps = 26/240 (10%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI-VSVFGPR------------ESK 84
RPD R F + RP + G + GSA + G T+V+ V+ G + E+K
Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372
Query: 85 KAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILE-TFPKTTVDVF 143
+ M + N + S PVRG G ++ +ALE I E FP T+ +
Sbjct: 373 RYMHHYNFPPFSTGES-----KPVRGPGRREIGHGALAERALEPVIPSEDEFP-YTIRLV 426
Query: 144 ALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKN-----LLIDPVLEEES 198
+ VL S GS + +++AL DAG+ + VA +S+ + K+ LL D E+
Sbjct: 427 SEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKDDGSFILLTDIQGIEDF 486
Query: 199 YQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNE-AMQLCLDASAKLGKIMRSCLKEAASD 257
+ D +A QL + T E A+ +A K+ M++ + + S+
Sbjct: 487 FGDMDFKVAGTREGITAIQLDIKIHGLTKEIIEKALYQAREARLKILDFMQTVIDKPRSE 546
>gi|407407934|gb|EKF31543.1| exosome complex exonuclease RRP41A, putative [Trypanosoma cruzi
marinkellei]
Length = 252
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 73/176 (41%), Gaps = 5/176 (2%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRL 95
LR D R + R G V G G + V SV+GPRE + + N +
Sbjct: 13 LRLDGRRPQESRRMTLEFGKVLGCDGCCTVMSGLSTVCASVYGPREVTNRLEGKYNECIV 72
Query: 96 NCNVSYTTFATPVRGQGSDHKDFSSMLHKAL----EGAIILETFPKTTVDVFALVLESGG 151
C V+ FA R S + A+ ++L +P + + + VL G
Sbjct: 73 TCEVAIAAFAGEKRRAPQRRSKLSEEMSAAVLEVARSVVLLSQYPNSQIHICVEVLRQDG 132
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIA 207
SD I+ A +AL DA + M D+V + +V + ++D EE Q ++ IA
Sbjct: 133 SDKAACINAACLALVDASVAMRDIVYAQTVGLIHAVDVVDLTTEEMRSQCPTICIA 188
>gi|169827176|ref|YP_001697334.1| polynucleotide phosphorylase [Lysinibacillus sphaericus C3-41]
gi|226702661|sp|B1HR13.1|PNP_LYSSC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|168991664|gb|ACA39204.1| Polyribonucleotide nucleotidyltransferase [Lysinibacillus
sphaericus C3-41]
Length = 704
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 80/190 (42%), Gaps = 20/190 (10%)
Query: 10 TAKATYSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFG 69
T K Y+ +D + + + D +RPD R + RP TG + GS G
Sbjct: 289 TMKQVYTILD--KMVKDEVRRQITEDKIRPDGRKLDEIRPLSSETGLLQRTHGSGLFTRG 346
Query: 70 NTKV-------------IVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHK 116
T+ I+ G ESK+ M + N + + + P+RG G
Sbjct: 347 QTQALSICTLGALGDVQIIDGLGVEESKRFMHHYNFPQFSVGET-----GPIRGPGRREI 401
Query: 117 DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLV 176
++ +ALE I E+ T+ + VLES GS I +++A+ DAG+ + V
Sbjct: 402 GHGALGERALEAVIPDESVFPYTIRCVSEVLESNGSTSQASICASTLAMMDAGVPLKAPV 461
Query: 177 ASVSVSCLGK 186
A +++ + K
Sbjct: 462 AGIAMGLIKK 471
>gi|380026087|ref|XP_003696793.1| PREDICTED: exosome complex component RRP46-like [Apis florea]
Length = 223
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 95/215 (44%), Gaps = 15/215 (6%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLNCNVSYTTFAT 106
RP ++ GSA GNT V+ ++GP E+K + M+Y + + VSY
Sbjct: 16 RPMNCELNQLSMPDGSAMLMQGNTAVVAGIYGPIEAKPQKMIYD---KASIEVSYI---- 68
Query: 107 PVRGQGSDHKDFSSM-LHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVAL 165
PV+G + M + + E AII+ P T + + +E G L I+ A +AL
Sbjct: 69 PVKGPAKIDDRMTEMYIKETCEAAIIVTFHPATAICINIQEMEDSGGMLACTINAACLAL 128
Query: 166 ADAGIMMYDLVASVSVSCL----GKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVT 221
+AGI M +A +V+C+ N+++DP + A + ++
Sbjct: 129 INAGIPMKFTIA--AVNCMIQEGTNNIILDPDSTQLQDAKAEFTYAFDSVKKDIICCYTA 186
Query: 222 GEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAAS 256
G ++ F E + C AS + R+ +K+ A+
Sbjct: 187 GCFTEEEFLETIDKCKQASQYVFDFYRNLVKKYAN 221
>gi|384516261|ref|YP_005711353.1| ribonuclease PH [Corynebacterium ulcerans 809]
gi|334697462|gb|AEG82259.1| ribonuclease PH [Corynebacterium ulcerans 809]
Length = 244
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 100/228 (43%), Gaps = 24/228 (10%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
++ R D R Q R G + +GS EFGNT+V+ + + S G
Sbjct: 5 NFKRADGRAVDQMRTVKITRGFTTNPAGSVLVEFGNTRVMCTASAEIGVPRFKRDSGEGW 64
Query: 95 LNCNVSYTTFAT-------PVRG--QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFAL 145
L + AT +RG +G H + S ++ ++L A+ L + T+++
Sbjct: 65 LTAEYAMLPAATLDRNPRESMRGKVKGRTH-EISRLIGRSLRAAVDLSELGENTINIDCD 123
Query: 146 VLESGGSDLPVVISCASVALADA-----------GIMMYDLVASVSVSCLGKNLLIDPVL 194
VL++ G I+ A VALADA G + D VA+VSV + + +D
Sbjct: 124 VLQADGGTRTASITGAYVALADAITHLQEQGVVPGNPLKDPVAAVSVGVIDGTVCLDLPY 183
Query: 195 EEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAK 242
EE+S D + + R+ ++ TGE +T +E ++ LD + K
Sbjct: 184 EEDSRADVDMNVIMQSGRF--VEIQGTGEHNTFDRDELARI-LDFAEK 228
>gi|289706339|ref|ZP_06502697.1| tRNA nucleotidyltransferase [Micrococcus luteus SK58]
gi|289556834|gb|EFD50167.1| tRNA nucleotidyltransferase [Micrococcus luteus SK58]
Length = 254
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 100/243 (41%), Gaps = 23/243 (9%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
RPD R + RP G A GSA EFGNT+V+ + + + G +
Sbjct: 10 RPDGRAVDELRPITITRGWSRQAEGSALIEFGNTRVLCTASFTEGVPRWLKGEGTGWVTA 69
Query: 98 NVSYTTFATPVRGQ--------GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ AT R Q G + S ++ ++L I L + T+ + VL++
Sbjct: 70 EYAMLPRATNERNQRESVKGRIGGRTHEISRLIGRSLRAVIDLSALGENTIVLDCDVLDA 129
Query: 150 GGSDLPVVISCASVALADA-------GIM------MYDLVASVSVSCLGKNLLID-PVLE 195
G I+ A VALA+A GI+ + D VA+VSV + ++D P +E
Sbjct: 130 DGGTRTAAITGAYVALAEAVAWARREGILAKGAAVLKDSVAAVSVGIVDGVPVLDLPYVE 189
Query: 196 E-ESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEA 254
+ ++ D ++++ EV ++ + + L L + +L +I L A
Sbjct: 190 DVKAETDMNVVVTGAGEFVEVQGTAEGAPFTRAELDTLLDLALIGTGELARIQAETLAAA 249
Query: 255 ASD 257
D
Sbjct: 250 TED 252
>gi|262190382|ref|ZP_06048643.1| ribonuclease PH [Vibrio cholerae CT 5369-93]
gi|262033743|gb|EEY52222.1| ribonuclease PH [Vibrio cholerae CT 5369-93]
Length = 238
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 80/184 (43%), Gaps = 19/184 (10%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RPD+R Q RP A GS EFGNTKV+ + PR K K +
Sbjct: 1 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60
Query: 90 SNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L T G QG + ++ ++L + LE + + V V++
Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA-------GIM----MYDLVASVSVSCLGKNLLIDPVLEEE 197
+ G I+ ASVALADA G + M VA+VSV LG+++L D E+
Sbjct: 121 ADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEYVED 180
Query: 198 SYQD 201
S D
Sbjct: 181 SAAD 184
>gi|417819099|ref|ZP_12465718.1| ribonuclease PH [Vibrio cholerae HE39]
gi|423944483|ref|ZP_17733164.1| ribonuclease PH [Vibrio cholerae HE-40]
gi|423973929|ref|ZP_17736709.1| ribonuclease PH [Vibrio cholerae HE-46]
gi|340042989|gb|EGR03950.1| ribonuclease PH [Vibrio cholerae HE39]
gi|408662491|gb|EKL33434.1| ribonuclease PH [Vibrio cholerae HE-40]
gi|408666512|gb|EKL37299.1| ribonuclease PH [Vibrio cholerae HE-46]
Length = 238
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 98/227 (43%), Gaps = 22/227 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RPD+R Q RP A GS EFGNTKV+ + PR K K +
Sbjct: 1 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60
Query: 90 SNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L T G QG + ++ ++L + LE + + V V++
Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA-------GIM----MYDLVASVSVSCLGKNLLIDPVLEEE 197
+ G I+ ASVALADA G + M VA+VSV LG ++L D E+
Sbjct: 121 ADGGTRTASITGASVALADAFTHLIAKGQLKKNPMKGHVAAVSVGILGGDVLCDLEYVED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLG 244
S D + + M ++ ++ T E P +E + L L A AK G
Sbjct: 181 SVADTDMNV-VMTEEGKMIEIQGTAE-GEPFCHEQL-LELLAVAKKG 224
>gi|406865017|gb|EKD18060.1| 3' exoribonuclease family protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 257
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 71/148 (47%), Gaps = 14/148 (9%)
Query: 37 LRPDSRGFHQCR--PAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
LR D R +++ R A RT A +A GS+Y E GNTKVI +V GP E K R
Sbjct: 13 LRLDGRRWNELRRLTAQMRTQA--AADGSSYLEMGNTKVICTVAGPSEGKAGTGQMGGAR 70
Query: 95 ----LNCNVSYTTFATPVR---GQGSDHKDFSSM---LHKALEGAIILETFPKTTVDVFA 144
++ +S F+ R G G K + M + A ++ +P +++ +
Sbjct: 71 DRATVDVTISVAGFSGVDRKRGGAGRGDKRLAEMQTTISTAFAQTLLTHLYPHSSIALSL 130
Query: 145 LVLESGGSDLPVVISCASVALADAGIMM 172
+L GS L I+ +++AL DAGI M
Sbjct: 131 HILSQDGSLLAACINASTLALVDAGIPM 158
>gi|156972970|ref|YP_001443877.1| ribonuclease PH [Vibrio harveyi ATCC BAA-1116]
gi|269959372|ref|ZP_06173755.1| ribonuclease PH [Vibrio harveyi 1DA3]
gi|156524564|gb|ABU69650.1| hypothetical protein VIBHAR_00648 [Vibrio harveyi ATCC BAA-1116]
gi|269835809|gb|EEZ89885.1| ribonuclease PH [Vibrio harveyi 1DA3]
Length = 240
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 97/227 (42%), Gaps = 22/227 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RP+ R Q RP A GS EFGNTKV+ V PR K K +
Sbjct: 3 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 62
Query: 90 SNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L T G QG + ++ ++L + L+ + + V V++
Sbjct: 63 AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDCDVIQ 122
Query: 149 SGGSDLPVVISCASVALADAGIMMYD-----------LVASVSVSCLGKNLLIDPVLEEE 197
+ G IS ASVA+ADA + D VA+VSV LG ++L D E+
Sbjct: 123 ADGGTRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLLGDDVLCDLEYVED 182
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLG 244
S D + + M ++ ++ T E P +E + L+ SAK+G
Sbjct: 183 SAADTDMNV-VMTEEGKMIEIQGTAE-GEPFSHEQLMALLE-SAKVG 226
>gi|260770721|ref|ZP_05879651.1| ribonuclease PH [Vibrio furnissii CIP 102972]
gi|375129315|ref|YP_004991410.1| ribonuclease PH [Vibrio furnissii NCTC 11218]
gi|260614302|gb|EEX39491.1| ribonuclease PH [Vibrio furnissii CIP 102972]
gi|315178484|gb|ADT85398.1| ribonuclease PH [Vibrio furnissii NCTC 11218]
Length = 238
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 99/227 (43%), Gaps = 22/227 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RP++R Q RP A GS EFGNTKV+ V PR K K +
Sbjct: 1 MRPNNRAADQVRPIQITRHYTAYAEGSVLVEFGNTKVLCNATVEEGVPRWLKGQGKGWVT 60
Query: 90 SNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L T G QG + ++ ++L + LE + + V V++
Sbjct: 61 AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLEAMGELMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA-------GIM----MYDLVASVSVSCLGKNLLIDPVLEEE 197
+ G IS ASVA+ADA G + M VA+VSV LG+++L D E+
Sbjct: 121 ADGGTRTASISGASVAMADAFDKLVADGKLKKNPMKGHVAAVSVGILGQDVLCDLEYVED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLG 244
S D + + M ++ ++ T E P +E + L L A AK G
Sbjct: 181 SAADTDMNV-VMTEEGKMIEIQGTAE-GEPFSHEQL-LDLLAVAKKG 224
>gi|358374939|dbj|GAA91527.1| 3' exoribonuclease family protein [Aspergillus kawachii IFO 4308]
Length = 324
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 118/303 (38%), Gaps = 62/303 (20%)
Query: 20 PTRKTRPPIFSGSDVDWL-----RPD-SRGFHQCRPAFFRTGAVNSASGSAYAEFGNT-- 71
P TRP +F+ S RP R + R F +TG + SASGSAY EF +
Sbjct: 10 PPSGTRPAVFASSLKSASSISTGRPRRQRQPDELRKIFLKTGLIPSASGSAYLEFEPSAS 69
Query: 72 ------------------KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG--- 110
K+ +V GP+ ++ +S L +V Y FA R
Sbjct: 70 LAAARSNPQSLIPPSSALKLACTVHGPKPLPRSASFSPNVVLTTHVKYAPFAARQRKGHI 129
Query: 111 QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES----------GGSDLP----- 155
+ + +D L AL G I+ E +PK+ +D+ +LE+ D P
Sbjct: 130 RDASERDLGVHLETALRGVIVAERWPKSGLDITITILEAEDDRWWGDAPDSHDAPWGMMN 189
Query: 156 VVISCASVALADAG---IMMYDLVAS------VSVSCLGKNLLIDPVLEEESYQDGSLMI 206
V+ C + A A I DLVA S G+ +L+ + + S++
Sbjct: 190 VLAGCITAASAAIADARIDCLDLVAGGVAAIVSDESAEGETSTPKLMLDTDPAEHKSILS 249
Query: 207 AC----MPSRYEVTQLTVTGEWSTPHFNEAMQ-----LCLDASAKLGKIMRSCLKEAASD 257
AC MPSR E+T+L + G+ S Q +D + + + L EA +
Sbjct: 250 ACVVAYMPSRDEITELWLKGDHSKASLGTTDQSLNHESLIDGAVNAARGAHTVLAEAVKE 309
Query: 258 EQE 260
E
Sbjct: 310 SAE 312
>gi|222529049|ref|YP_002572931.1| polynucleotide phosphorylase/polyadenylase [Caldicellulosiruptor
bescii DSM 6725]
gi|257096680|sp|B9MR54.1|PNP_ANATD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|222455896|gb|ACM60158.1| Polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
bescii DSM 6725]
Length = 701
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 103/240 (42%), Gaps = 26/240 (10%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI-VSVFGPR------------ESK 84
RPD R F + RP + G + GSA + G T+V+ V+ G + E+K
Sbjct: 313 RPDGRKFDEIRPLYAEIGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372
Query: 85 KAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILE-TFPKTTVDVF 143
+ M + N + S PVRG G ++ +ALE I E FP T+ +
Sbjct: 373 RYMHHYNFPPFSTGES-----KPVRGPGRREIGHGALAERALEPVIPSEDEFP-YTIRLV 426
Query: 144 ALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKN-----LLIDPVLEEES 198
+ VL S GS + +++AL DAG+ + VA +S+ + K+ LL D E+
Sbjct: 427 SEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKDDGSFILLTDIQGIEDF 486
Query: 199 YQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNE-AMQLCLDASAKLGKIMRSCLKEAASD 257
+ D +A QL + T E A+ +A K+ M++ + + S+
Sbjct: 487 FGDMDFKVAGTREGITAIQLDIKIHGLTKEIIEKALYQAREARLKILDFMQTVIDKPRSE 546
>gi|239917361|ref|YP_002956919.1| RNAse PH [Micrococcus luteus NCTC 2665]
gi|281414156|ref|ZP_06245898.1| RNAse PH [Micrococcus luteus NCTC 2665]
gi|239838568|gb|ACS30365.1| RNAse PH [Micrococcus luteus NCTC 2665]
Length = 254
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 100/243 (41%), Gaps = 23/243 (9%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
RPD R + RP G A GSA EFGNT+V+ + + + G +
Sbjct: 10 RPDGRAVDELRPITITRGWSRQAEGSALIEFGNTRVLCTASFTEGVPRWLKGEGTGWVTA 69
Query: 98 NVSYTTFATPVRGQ--------GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ AT R Q G + S ++ ++L I L + T+ + VL++
Sbjct: 70 EYAMLPRATNERSQRESVKGRIGGRTHEISRLIGRSLRAVIDLSALGENTIVLDCDVLDA 129
Query: 150 GGSDLPVVISCASVALADA-------GIM------MYDLVASVSVSCLGKNLLID-PVLE 195
G I+ A VALA+A GI+ + D VA+VSV + ++D P +E
Sbjct: 130 DGGTRTAAITGAYVALAEAVAWARREGILAKGAAVLKDSVAAVSVGIVDGVPVLDLPYVE 189
Query: 196 E-ESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEA 254
+ ++ D ++++ EV ++ + + L L + +L +I L A
Sbjct: 190 DVKAETDMNVVVTGAGEFVEVQGTAEGAPFTRAELDTLLDLALIGTGELARIQAETLAAA 249
Query: 255 ASD 257
D
Sbjct: 250 TED 252
>gi|344995762|ref|YP_004798105.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
lactoaceticus 6A]
gi|343963981|gb|AEM73128.1| Polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
lactoaceticus 6A]
Length = 701
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 100/234 (42%), Gaps = 26/234 (11%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI-VSVFGPR------------ESK 84
RPD R F + RP + G + GSA + G T+V+ V+ G + E+K
Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372
Query: 85 KAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILE-TFPKTTVDVF 143
+ M + N + S PVRG G ++ +ALE I E FP T+ +
Sbjct: 373 RYMHHYNFPPFSTGES-----KPVRGPGRREIGHGALAERALEPVIPSEDEFP-YTIRLV 426
Query: 144 ALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKN-----LLIDPVLEEES 198
+ VL S GS + +++AL DAG+ + VA +S+ + K+ LL D E+
Sbjct: 427 SEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKDDGSFILLTDIQGIEDF 486
Query: 199 YQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNE-AMQLCLDASAKLGKIMRSCL 251
+ D +A QL + T E A+ +A K+ M++ +
Sbjct: 487 FGDMDFKVAGTREGITAIQLDIKIHGLTKEIIEKALYQAREARLKILDFMKTVI 540
>gi|340354948|ref|ZP_08677644.1| polyribonucleotide nucleotidyltransferase [Sporosarcina
newyorkensis 2681]
gi|339622962|gb|EGQ27473.1| polyribonucleotide nucleotidyltransferase [Sporosarcina
newyorkensis 2681]
Length = 707
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 77/168 (45%), Gaps = 20/168 (11%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV-------------IVSVFGP 80
VD +RPD R + RP TG + A GS+ G T+V I+ G
Sbjct: 312 VDKVRPDGRALDEIRPLSSETGLLQRAHGSSLFTRGQTQVLSVCTLGALGEVQIIDGLGL 371
Query: 81 RESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILE-TFPKTT 139
ESK+ M + N N +V T P+RG G ++ +AL + E FP T
Sbjct: 372 DESKRFMHHYNFP--NFSVGETG---PIRGPGRREIGHGALGERALLPVLPNEDEFP-YT 425
Query: 140 VDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKN 187
+ + A VLES GS I +++A+ DAG+ + VA +++ + K
Sbjct: 426 MRLVAEVLESNGSSSQASICASTMAMMDAGVPIKSPVAGIAMGLIKKE 473
>gi|312127889|ref|YP_003992763.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
hydrothermalis 108]
gi|311777908|gb|ADQ07394.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
hydrothermalis 108]
Length = 701
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 103/240 (42%), Gaps = 26/240 (10%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI-VSVFGPR------------ESK 84
RPD R F + RP + G + GSA + G T+V+ V+ G + E+K
Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372
Query: 85 KAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILE-TFPKTTVDVF 143
+ M + N + S PVRG G ++ +ALE I E FP T+ +
Sbjct: 373 RYMHHYNFPPFSTGES-----KPVRGPGRREIGHGALAERALEPVIPSEDEFP-YTIRLV 426
Query: 144 ALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKN-----LLIDPVLEEES 198
+ VL S GS + +++AL DAG+ + VA +S+ + K+ LL D E+
Sbjct: 427 SEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKDDGSFILLTDIQGIEDF 486
Query: 199 YQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNE-AMQLCLDASAKLGKIMRSCLKEAASD 257
+ D +A QL + T E A+ +A K+ M++ + + S+
Sbjct: 487 FGDMDFKVAGTREGITAIQLDIKIHGLTREIIEKALYQAREARLKILDFMQTVIDKPRSE 546
>gi|153835514|ref|ZP_01988181.1| ribonuclease PH [Vibrio harveyi HY01]
gi|350529960|ref|ZP_08908901.1| ribonuclease PH [Vibrio rotiferianus DAT722]
gi|424034397|ref|ZP_17773802.1| ribonuclease PH [Vibrio cholerae HENC-01]
gi|424048245|ref|ZP_17785799.1| ribonuclease PH [Vibrio cholerae HENC-03]
gi|148867911|gb|EDL67124.1| ribonuclease PH [Vibrio harveyi HY01]
gi|408873000|gb|EKM12207.1| ribonuclease PH [Vibrio cholerae HENC-01]
gi|408882880|gb|EKM21675.1| ribonuclease PH [Vibrio cholerae HENC-03]
Length = 238
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 97/227 (42%), Gaps = 22/227 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RP+ R Q RP A GS EFGNTKV+ V PR K K +
Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 60
Query: 90 SNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L T G QG + ++ ++L + L+ + + V V++
Sbjct: 61 AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADAGIMMYD-----------LVASVSVSCLGKNLLIDPVLEEE 197
+ G IS ASVA+ADA + D VA+VSV LG ++L D E+
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLLGDDVLCDLEYVED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLG 244
S D + + M ++ ++ T E P +E + L+ SAK+G
Sbjct: 181 SAADTDMNV-VMTEEGKMIEIQGTAE-GEPFSHEQLMALLE-SAKVG 224
>gi|149189226|ref|ZP_01867513.1| ribonuclease PH [Vibrio shilonii AK1]
gi|148836980|gb|EDL53930.1| ribonuclease PH [Vibrio shilonii AK1]
Length = 238
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 93/230 (40%), Gaps = 20/230 (8%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RP+ R Q RP A GS EFGNTKV+ + + + G +
Sbjct: 1 MRPNDRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60
Query: 97 CNVSYTTFATPVR--------GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+T R QG + ++ ++L + LE + V V V++
Sbjct: 61 AEYGMLPRSTHSRMRREASSGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA-------GIM----MYDLVASVSVSCLGKNLLIDPVLEEE 197
+ G IS ASVA+ADA G + M VA+VSV LG+++L D E+
Sbjct: 121 ADGGTRTASISGASVAMADAFAHLVAKGKLKANPMKGHVAAVSVGILGEDILCDLEYTED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIM 247
S D + + M + ++ T E E M L A+ + +I+
Sbjct: 181 SAADTDMNV-VMTEDGRMIEIQGTAEGEPFTHKELMALLESANKGIAEIV 229
>gi|378551363|ref|ZP_09826579.1| hypothetical protein CCH26_14789 [Citricoccus sp. CH26A]
Length = 269
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 98/237 (41%), Gaps = 23/237 (9%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R + RP G A GSA EFGNT+V+ + + + G +
Sbjct: 29 RQDGRALNALRPISITRGWSRQAEGSALIEFGNTRVLCTASFTEGVPRWLKGEGTGWVTA 88
Query: 98 NVSYTTFATPVRGQ--------GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ AT R Q G + S ++ ++L I L+ + T+ + VLE+
Sbjct: 89 EYAMLPRATNTRSQRESVKGRIGGRTHEISRLIGRSLRAIIDLKVLGENTIVLDCDVLEA 148
Query: 150 GGSDLPVVISCASVALADA-------GIM------MYDLVASVSVSCLGKNLLID-PVLE 195
G I+ A VALADA GI+ + D VA+VSV + ++D P +E
Sbjct: 149 DGGTRTAAITGAYVALADAITWAKGRGIIPAAAQPLKDSVAAVSVGIIDGVPMLDLPYVE 208
Query: 196 E-ESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
+ + D ++++ EV + + + L ++ +A+L +I L
Sbjct: 209 DVRAETDMNVVVTGAGDFVEVQGTAEGAPFRRAELDALLDLAVEGTAELTRIQHETL 265
>gi|320591734|gb|EFX04173.1| exosome complex exonuclease rrp41 [Grosmannia clavigera kw1407]
Length = 511
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 102/247 (41%), Gaps = 28/247 (11%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE--SKKAMMY----- 89
LR D R +++ R +A GS+Y E GNTKV+ + GP E +A M
Sbjct: 236 LRVDGRRWNELRRCHAEVRTQAAADGSSYLEMGNTKVMCVLTGPSEVGQSRARMAGGGGG 295
Query: 90 --------SNIGRLNCNVSYTTFATPVRGQGSDH----KDFSSMLHKALEGAIILETFPK 137
+ + N+ F++ R + S ++ ++ + + L + +P+
Sbjct: 296 GGGGGGGDAKDAEVIVNIVVAGFSSVNRQRRSRQDKRTQEMAATISRTLAAVLHTHLYPR 355
Query: 138 TTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNL--------L 189
+T+ + VL GS L +I+ A++A DAGI M D V + S L
Sbjct: 356 STITISLHVLSQDGSLLAALINAATLAAVDAGIPMADYVVACSAGSSSSYAAADDAADPL 415
Query: 190 IDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRS 249
+D L+EE G L +A + + V L + + +D ++ I+
Sbjct: 416 LDLNLQEEQELPG-LTVATLGASDRVAALVCESRVQAGRLEGMLAVAVDGCKQVRAILDK 474
Query: 250 CLKEAAS 256
++EA +
Sbjct: 475 VVREAGA 481
>gi|403221406|dbj|BAM39539.1| 3' exonuclease, exosome component [Theileria orientalis strain
Shintoku]
Length = 258
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 14/163 (8%)
Query: 44 FHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNV-SYT 102
F Q RP + ++ GS GNT V V P+ S K S+ G+ V S
Sbjct: 15 FTQLRPLDVKLSTSSTFHGSCIINLGNTIVKCLVNLPKVSAKKAA-SDFGQFTLEVTSND 73
Query: 103 TFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCAS 162
+F T D + + + + E II++ +P ++ + ++ G LP V+
Sbjct: 74 SFHTQ-----KDLETLKTQILETFEKHIIMDNYPCQIIEAYVIISNDDGGLLPTVLMGMC 128
Query: 163 VALADAGIMMYDLVASVSVSCLGKN------LLIDPVLEEESY 199
+AL D GI +YD++A+ SV C+ K+ + +D EEE Y
Sbjct: 129 LALIDCGIHVYDVIAACSV-CVFKDRNQQLTVALDLTREEEEY 170
>gi|323497057|ref|ZP_08102080.1| ribonuclease PH [Vibrio sinaloensis DSM 21326]
gi|323317901|gb|EGA70889.1| ribonuclease PH [Vibrio sinaloensis DSM 21326]
Length = 238
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 97/230 (42%), Gaps = 20/230 (8%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RP+ R Q RP A GS EFGNTKV+ V PR K K +
Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60
Query: 90 SNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L + G QG + ++ ++L + LE + V V V++
Sbjct: 61 AEYGMLPRSTHSRMRREAASGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA-------GIM----MYDLVASVSVSCLGKNLLIDPVLEEE 197
+ G IS ASVA+ADA G + M VA+VSV LG+++L D E+
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVEKGKLKANPMKGHVAAVSVGILGEDILCDLEYTED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIM 247
S D + + M + ++ T E E M+L A+ + +I+
Sbjct: 181 SAADTDMNV-VMTEDGRMIEVQGTAEGEPFTHAELMKLLESATKGISEIV 229
>gi|71665831|ref|XP_819881.1| ribosomal RNA processing protein 41A [Trypanosoma cruzi strain CL
Brener]
gi|70885202|gb|EAN98030.1| ribosomal RNA processing protein 41A, putative [Trypanosoma cruzi]
Length = 252
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 72/176 (40%), Gaps = 5/176 (2%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRL 95
LR D R + R G V G G V SV+GPRE + + N +
Sbjct: 13 LRLDGRRPQESRRMTLEFGKVLGCDGCCTVMSGLATVCASVYGPREVTNRLESKYNECII 72
Query: 96 NCNVSYTTFATPVRGQGSDHKDFSSMLHKAL----EGAIILETFPKTTVDVFALVLESGG 151
C V+ FA R S + A+ ++L +P + + + VL G
Sbjct: 73 TCEVAIAAFAGEKRRAPQRRSKLSEEMSAAVLEVARSVVLLSQYPNSQIHICVEVLRQDG 132
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIA 207
SD I+ A +AL DA + M D+V + +V + ++D EE Q ++ IA
Sbjct: 133 SDKAACINAACLALVDACVAMRDIVYAQTVGLIHAVDVVDLTTEEMRSQCPTICIA 188
>gi|255953039|ref|XP_002567272.1| Pc21g02070 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211588983|emb|CAP95104.1| Pc21g02070 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 315
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 106/260 (40%), Gaps = 56/260 (21%)
Query: 20 PTRKTRPPIF-----SGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEF------ 68
P TRPP+F S +D+ R + R F + G + +ASGS+Y EF
Sbjct: 10 PPGGTRPPVFASLQESSTDIANRAQRQRQPTELRKIFLKAGLIPTASGSSYLEFEPSASL 69
Query: 69 ----GNTKVIV----------SVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG---Q 111
N K ++ +V GP+ ++ +S L +V Y FA R +
Sbjct: 70 AAARSNPKSLIPPSSALKLACTVHGPKPLPRSAAFSPNLVLTTHVKYAPFAARKRKGHIR 129
Query: 112 GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS----DLP-----------V 156
+ +D L AL GAII E +PK+ +D+ ++E+ D P V
Sbjct: 130 DASERDLGVHLETALRGAIIAERWPKSGLDITLTIIEAEDDRWWGDAPDSHDASWGMMNV 189
Query: 157 VISCASVALADAGIMMYDLVASVS--VSCL-----------GKNLLIDPVLEEESYQDGS 203
+ C + A A D + VS V+ L L++D E +
Sbjct: 190 LAGCITAASAAIADAHIDCLDLVSGGVAALVSDDSSQSASSAPRLMLDIDPAEHRSILSA 249
Query: 204 LMIACMPSRYEVTQLTVTGE 223
++A MP+R E+T+L + G+
Sbjct: 250 CVVAYMPARDEITELWLKGD 269
>gi|421350051|ref|ZP_15800419.1| ribonuclease PH [Vibrio cholerae HE-25]
gi|395955158|gb|EJH65761.1| ribonuclease PH [Vibrio cholerae HE-25]
Length = 238
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 98/227 (43%), Gaps = 22/227 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RPD+R Q RP A GS EFGNTKV+ + PR K K +
Sbjct: 1 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60
Query: 90 SNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L T G QG + ++ ++L + LE + + V V++
Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA-------GIM----MYDLVASVSVSCLGKNLLIDPVLEEE 197
+ G I+ ASVALADA G + M VA+VSV LG ++L D E+
Sbjct: 121 ADGGTRTASITGASVALADAFTHLIAKGQLKKNPMKGHVAAVSVGILGGDVLCDLEYVED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLG 244
S D + + M ++ ++ T E P +E + L L A AK G
Sbjct: 181 SAADTDMNV-VMTEEGKMIEIQGTAE-GEPFCHEQL-LELLAVAKKG 224
>gi|345565548|gb|EGX48497.1| hypothetical protein AOL_s00080g126 [Arthrobotrys oligospora ATCC
24927]
Length = 246
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 8/150 (5%)
Query: 34 VDWLRPDSRGFHQCRPAF--FRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYS 90
++ LR D R +++ R T + N A GS+Y E G TKV+ +V GP E S + +
Sbjct: 1 MEGLRNDGRRWNELRRIHCQLSTSSTN-ADGSSYIEQGFTKVLCNVTGPAEPSSRQKVKQ 59
Query: 91 NIGRLNCNVSYTTFATPVR-GQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALV 146
+ + C V + F+ R +G + K + + + K I+ F ++ + + +
Sbjct: 60 DAATVTCEVYFAAFSGTDRIKRGRNDKKVQELQTAIQKTFASVILTHLFSRSEITISIHI 119
Query: 147 LESGGSDLPVVISCASVALADAGIMMYDLV 176
L G L I+ ++AL DAGI + D V
Sbjct: 120 LSQDGGTLAACINATTLALIDAGIPLKDYV 149
>gi|403158112|ref|XP_003307453.2| hypothetical protein PGTG_00403 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375163684|gb|EFP74447.2| hypothetical protein PGTG_00403 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 292
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 107/234 (45%), Gaps = 33/234 (14%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASG---SAYAEFGNTKVIVSVFGPRESKKA--MMYSN 91
LR D+R ++ R F N G A E G TK+I V GPR+S ++ + +
Sbjct: 12 LRLDNRRPYELRSIDFNILP-NPPVGCDSVARVEHGLTKLIGFVSGPRDSVESNRTVATT 70
Query: 92 IGR--------------------LNCNVSYTTFATPVRGQ--GSDHK--DFSSMLHKALE 127
+G ++ ++S T F++ R + SD K D + + E
Sbjct: 71 LGNPTSNSASSNLNNNNNNQNGSISVHISTTPFSSIDRKKIGRSDKKFADLAQAIQNTFE 130
Query: 128 GAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKN 187
++L +P++T+D++ VL+ G+ L I+ ++AL AG+ + D V SVSV L
Sbjct: 131 PVVMLHLYPRSTIDIYVQVLQQDGALLQAAINVTTLALIGAGVSISDYVLSVSVGALSTP 190
Query: 188 L--LIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDA 239
L+D + E +L IA +P ++T L + + F +++ L+A
Sbjct: 191 SCPLLD-LTNSEQTDLPNLTIAVLPRTQKLTLLQLDTRINILTFESLLEIGLEA 243
>gi|262392601|ref|YP_003284455.1| ribonuclease PH [Vibrio sp. Ex25]
gi|262336195|gb|ACY49990.1| ribonuclease PH [Vibrio sp. Ex25]
Length = 238
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 97/227 (42%), Gaps = 22/227 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RP+ R Q RP A GS EFGNTKV+ V PR K K +
Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 60
Query: 90 SNIGRL-NCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L S T QG + ++ ++L + L+ + + V V++
Sbjct: 61 AEYGMLPRATHSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADAGIMMYD-----------LVASVSVSCLGKNLLIDPVLEEE 197
+ G IS ASVA+ADA + D VA+VSV LG ++L D E+
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLLGDDVLCDLEYVED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLG 244
S D + + M ++ ++ T E P +E + L+ SAK+G
Sbjct: 181 SAADTDMNV-VMTEEGKMIEIQGTAE-GEPFSHEQLMALLE-SAKIG 224
>gi|374850303|dbj|BAL53295.1| ribonuclease PH [uncultured Aquificae bacterium]
Length = 253
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 98/236 (41%), Gaps = 25/236 (10%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+R D R ++ RP + GS EFGNTKVI +V + G +
Sbjct: 1 MRKDGRKPNELRPIRIVRDYLQHPEGSCLIEFGNTKVICTVSVQDGVPPFLKGKGQGWIT 60
Query: 97 CNVSYTTFATPVRG---------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVL 147
S AT R G H + M+ +A+ A+ L + T + V+
Sbjct: 61 AEYSMLPRATITRNIRESVQGRISGRTH-EIQRMIGRAMRTALDLTKIGERTFWIDCDVI 119
Query: 148 ESGGSDLPVVISCASVALADAGIMMY-----------DLVASVSVSCLGKNLLIDPVLEE 196
++ G I+ A VALADA I +Y D VASVSV + +L+D EE
Sbjct: 120 QADGGTRTASITGAFVALADAVIKLYSEGILSSTPIKDFVASVSVGMVSGQMLLDLNYEE 179
Query: 197 ESYQDGSLMIACMPSRYEVTQLTVTGE---WSTPHFNEAMQLCLDASAKLGKIMRS 249
+S + + S ++++ GE +S F+ + L L ++L ++ R+
Sbjct: 180 DSTASVDMNVVATGS-GRISEIQALGEENTFSREEFDRMLSLALAGISQLIELQRA 234
>gi|429853450|gb|ELA28524.1| 3 exoribonuclease family protein [Colletotrichum gloeosporioides
Nara gc5]
Length = 570
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 77/149 (51%), Gaps = 7/149 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK---AMMYSNIG 93
LR D R +++ R + +A GS+Y E G+TKV+ V GP E ++ A +
Sbjct: 317 LRVDGRRWNELRRLHAQIRTQEAADGSSYLEMGHTKVMCVVTGPSEPQRRGGAGGQTKDA 376
Query: 94 RLNCNVSYTTFAT-PVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+N N+ F++ R +G + K + + + KA+ + FP +++ + VL
Sbjct: 377 AVNVNIVVAGFSSVDRRKRGRNDKRNQELEAAIAKAVAANLHTHLFPHSSISISLHVLSQ 436
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVAS 178
GS L +++ +++AL DAGI M D +A+
Sbjct: 437 DGSLLATLLNASTLALIDAGIPMTDYIAA 465
>gi|343501541|ref|ZP_08739415.1| ribonuclease PH [Vibrio tubiashii ATCC 19109]
gi|418481562|ref|ZP_13050597.1| ribonuclease PH [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
gi|342817586|gb|EGU52464.1| ribonuclease PH [Vibrio tubiashii ATCC 19109]
gi|384570819|gb|EIF01370.1| ribonuclease PH [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
Length = 238
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 97/230 (42%), Gaps = 20/230 (8%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RP+ R Q RP A GS EFGNTKV+ V PR K K +
Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60
Query: 90 SNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L + G QG + ++ ++L + LE + V V V++
Sbjct: 61 AEYGMLPRSTHSRMRREAASGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA-------GIM----MYDLVASVSVSCLGKNLLIDPVLEEE 197
+ G IS ASVA+ADA G + M VA+VSV LG+++L D E+
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVEKGKLKANPMKSHVAAVSVGILGEDILCDLEYTED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIM 247
S D + + M + ++ T E E M+L A+ + +I+
Sbjct: 181 SAADTDMNV-VMTEDGRMIEVQGTAEGEPFTHAELMKLLESATKGITEIV 229
>gi|254228598|ref|ZP_04922023.1| ribonuclease PH [Vibrio sp. Ex25]
gi|151938980|gb|EDN57813.1| ribonuclease PH [Vibrio sp. Ex25]
Length = 240
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 97/227 (42%), Gaps = 22/227 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RP+ R Q RP A GS EFGNTKV+ V PR K K +
Sbjct: 3 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 62
Query: 90 SNIGRL-NCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L S T QG + ++ ++L + L+ + + V V++
Sbjct: 63 AEYGMLPRATHSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMITVDCDVIQ 122
Query: 149 SGGSDLPVVISCASVALADAGIMMYD-----------LVASVSVSCLGKNLLIDPVLEEE 197
+ G IS ASVA+ADA + D VA+VSV LG ++L D E+
Sbjct: 123 ADGGTRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLLGDDVLCDLEYVED 182
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLG 244
S D + + M ++ ++ T E P +E + L+ SAK+G
Sbjct: 183 SAADTDMNV-VMTEEGKMIEIQGTAE-GEPFSHEQLMALLE-SAKIG 226
>gi|312793244|ref|YP_004026167.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312180384|gb|ADQ40554.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 701
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 100/234 (42%), Gaps = 26/234 (11%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI-VSVFGPR------------ESK 84
RPD R F + RP + G + GSA + G T+V+ V+ G + E+K
Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372
Query: 85 KAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILE-TFPKTTVDVF 143
+ M + N + S PVRG G ++ +ALE I E FP T+ +
Sbjct: 373 RYMHHYNFPPFSTGES-----KPVRGPGRREIGHGALAERALEPVIPSEDEFP-YTIRLV 426
Query: 144 ALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKN-----LLIDPVLEEES 198
+ VL S GS + +++AL DAG+ + VA +S+ + K+ LL D E+
Sbjct: 427 SEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKDDGSFILLTDIQGIEDF 486
Query: 199 YQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNE-AMQLCLDASAKLGKIMRSCL 251
+ D +A QL + T E A+ +A K+ M++ +
Sbjct: 487 FGDMDFKVAGTREGITAIQLDIKIHGLTKEIIEKALYQAREARLKILDFMQTVI 540
>gi|119479959|ref|XP_001260008.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Neosartorya fischeri NRRL 181]
gi|119408162|gb|EAW18111.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Neosartorya fischeri NRRL 181]
Length = 269
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 10/152 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK-------AMMY 89
LR D R +++ R + ++SGS++ GNT ++ SV GP E K+ A
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSFLSMGNTSIMCSVHGPAEGKRGDATGGAAGSA 73
Query: 90 SNIGRLNCNVS-YTTFATPVRGQGSDHKD--FSSMLHKALEGAIILETFPKTTVDVFALV 146
+ ++ NV+ + R GSD + +++L A + + +P +T+ + V
Sbjct: 74 GAVVEVDVNVAGFAGVDRRRRAGGSDRQSSRIATILRSAFQSHLHTHLYPHSTISIHVSV 133
Query: 147 LESGGSDLPVVISCASVALADAGIMMYDLVAS 178
L + GS L ++ ++AL DAGI M L+++
Sbjct: 134 LSADGSLLAAAVNACTLALVDAGIPMPGLLSA 165
>gi|407841343|gb|EKG00711.1| exosome-associated protein 4, putative,3' exoribonuclease, putative
[Trypanosoma cruzi]
Length = 229
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 67/155 (43%), Gaps = 10/155 (6%)
Query: 63 SAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDH------- 115
SA E GNT+VI +V P++ S GR+ C V + A GS
Sbjct: 29 SACVELGNTRVICAVHHPQQLVDEYRGSR-GRVACTVRRSASAGS-HAAGSAQPSVVTPE 86
Query: 116 KDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDL 175
KD S L E +ILE P+ V+V +L G V + S AL G MYDL
Sbjct: 87 KDMSLALEGVAEEVVILEKIPQLLVEVVVEILAEDGGVWDAVATSMSAALVSGGFEMYDL 146
Query: 176 VASVSVSCLGKN-LLIDPVLEEESYQDGSLMIACM 209
++ + L +++DP EES S ++ M
Sbjct: 147 FSACGSALLSDGAVVLDPDAAEESNAQASALVCVM 181
>gi|300859074|ref|YP_003784057.1| ribonuclease PH [Corynebacterium pseudotuberculosis FRC41]
gi|375289262|ref|YP_005123803.1| ribonuclease PH [Corynebacterium pseudotuberculosis 3/99-5]
gi|379715946|ref|YP_005304283.1| ribonuclease PH [Corynebacterium pseudotuberculosis 316]
gi|383314832|ref|YP_005375687.1| Ribonuclease PH [Corynebacterium pseudotuberculosis P54B96]
gi|384505246|ref|YP_005681916.1| Ribonuclease PH [Corynebacterium pseudotuberculosis 1002]
gi|384507349|ref|YP_005684018.1| Ribonuclease PH [Corynebacterium pseudotuberculosis C231]
gi|384509438|ref|YP_005686106.1| Ribonuclease PH [Corynebacterium pseudotuberculosis I19]
gi|384511521|ref|YP_005691099.1| Ribonuclease PH [Corynebacterium pseudotuberculosis PAT10]
gi|385808134|ref|YP_005844531.1| Ribonuclease PH [Corynebacterium pseudotuberculosis 267]
gi|386740965|ref|YP_006214145.1| Ribonuclease PH [Corynebacterium pseudotuberculosis 31]
gi|387137171|ref|YP_005693151.1| ribonuclease PH [Corynebacterium pseudotuberculosis 42/02-A]
gi|387139229|ref|YP_005695208.1| Ribonuclease PH [Corynebacterium pseudotuberculosis CIP 52.97]
gi|387141213|ref|YP_005697191.1| ribonuclease PH [Corynebacterium pseudotuberculosis 1/06-A]
gi|389850991|ref|YP_006353226.1| Ribonuclease PH [Corynebacterium pseudotuberculosis 258]
gi|300686528|gb|ADK29450.1| ribonuclease PH [Corynebacterium pseudotuberculosis FRC41]
gi|302206777|gb|ADL11119.1| Ribonuclease PH [Corynebacterium pseudotuberculosis C231]
gi|302331330|gb|ADL21524.1| Ribonuclease PH [Corynebacterium pseudotuberculosis 1002]
gi|308277022|gb|ADO26921.1| Ribonuclease PH [Corynebacterium pseudotuberculosis I19]
gi|341825460|gb|AEK92981.1| Ribonuclease PH [Corynebacterium pseudotuberculosis PAT10]
gi|348607616|gb|AEP70889.1| Ribonuclease PH [Corynebacterium pseudotuberculosis 42/02-A]
gi|349735707|gb|AEQ07185.1| Ribonuclease PH [Corynebacterium pseudotuberculosis CIP 52.97]
gi|355393004|gb|AER69669.1| Ribonuclease PH [Corynebacterium pseudotuberculosis 1/06-A]
gi|371576551|gb|AEX40154.1| Ribonuclease PH [Corynebacterium pseudotuberculosis 3/99-5]
gi|377654652|gb|AFB73001.1| Ribonuclease PH [Corynebacterium pseudotuberculosis 316]
gi|380870333|gb|AFF22807.1| Ribonuclease PH [Corynebacterium pseudotuberculosis P54B96]
gi|383805527|gb|AFH52606.1| Ribonuclease PH [Corynebacterium pseudotuberculosis 267]
gi|384477659|gb|AFH91455.1| Ribonuclease PH [Corynebacterium pseudotuberculosis 31]
gi|388248297|gb|AFK17288.1| Ribonuclease PH [Corynebacterium pseudotuberculosis 258]
Length = 247
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 100/228 (43%), Gaps = 24/228 (10%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
++ R D R Q R G + +GS EFGNT+V+ + + S G
Sbjct: 8 NFKRADGRAVDQMRTVKITRGFTTNPAGSVLVEFGNTRVMCTASAEIGVPRFKRDSGEGW 67
Query: 95 LNCNVSYTTFAT-------PVRG--QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFAL 145
L + AT +RG +G H + S ++ ++L A+ L + T+++
Sbjct: 68 LTAEYAMLPAATLDRNPRESMRGKVKGRTH-EISRLIGRSLRAAVDLSELGENTINIDCD 126
Query: 146 VLESGGSDLPVVISCASVALADA-----------GIMMYDLVASVSVSCLGKNLLIDPVL 194
VL++ G I+ A VALADA G + D VA+VSV + + +D
Sbjct: 127 VLQADGGTRTASITGAYVALADAISHLQKQGVVPGNPLKDPVAAVSVGVIDGAVCLDLPY 186
Query: 195 EEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAK 242
EE+S D + + R+ ++ TGE +T +E ++ LD + K
Sbjct: 187 EEDSRADVDMNVIMQNGRF--VEIQGTGEHNTFDRDELARI-LDFAEK 231
>gi|254507299|ref|ZP_05119435.1| ribonuclease PH [Vibrio parahaemolyticus 16]
gi|219549759|gb|EED26748.1| ribonuclease PH [Vibrio parahaemolyticus 16]
Length = 240
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 97/230 (42%), Gaps = 20/230 (8%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RP+ R Q RP A GS EFGNTKV+ V PR K K +
Sbjct: 3 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 62
Query: 90 SNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L + G QG + ++ ++L + LE + V V V++
Sbjct: 63 AEYGMLPRSTHSRMRREAASGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDCDVIQ 122
Query: 149 SGGSDLPVVISCASVALADA-------GIM----MYDLVASVSVSCLGKNLLIDPVLEEE 197
+ G IS ASVA+ADA G + M VA+VSV LG+++L D E+
Sbjct: 123 ADGGTRTASISGASVAMADAFQHLVEKGKLKANPMKGHVAAVSVGILGEDILCDLEYTED 182
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIM 247
S D + + M + ++ T E E M+L A+ + +I+
Sbjct: 183 SAADTDMNV-VMTEDGRMIEVQGTAEGEPFTHAELMKLLESATKGITEIV 231
>gi|440804447|gb|ELR25324.1| exosome complex exonuclease rrp41, putative [Acanthamoeba
castellanii str. Neff]
Length = 205
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 84/208 (40%), Gaps = 44/208 (21%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
+ LR D R + R + G V+ A GSA GNT+V+ +++GP+E+
Sbjct: 10 EGLRMDGRRPGELRRIEAKMGVVSKADGSALFRQGNTQVLATIYGPKEA----------- 58
Query: 95 LNCNVSYTTFATPVR-GQGSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151
FA+ R + +D K + ++ + E ++ +P++ +D++ VL+S G
Sbjct: 59 --------GFASGERKSKKTDKKTVELGMLIRQTFESVVMTALYPRSQIDIYVQVLQSDG 110
Query: 152 SDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS 211
L I+ ++A+ DA DP E + L++A P
Sbjct: 111 GALSAAINATTLAMIDA----------------------DPNFVENTAGGPELLVAIEPK 148
Query: 212 RYEVTQLTVTGEWSTPHFNEAMQLCLDA 239
V + + + + +L +D
Sbjct: 149 SQLVVSMEMESKLPMEMYERVAKLAIDG 176
>gi|392401152|ref|YP_006437752.1| ribonuclease PH [Corynebacterium pseudotuberculosis Cp162]
gi|390532230|gb|AFM07959.1| Ribonuclease PH [Corynebacterium pseudotuberculosis Cp162]
Length = 247
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 100/228 (43%), Gaps = 24/228 (10%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
++ R D R Q R G + +GS EFGNT+V+ + + S G
Sbjct: 8 NFKRADGRAVDQMRTVKITRGFTTNPAGSVLVEFGNTRVMCTASAEIGVPRFKRDSGEGW 67
Query: 95 LNCNVSYTTFAT-------PVRG--QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFAL 145
L + AT +RG +G H + S ++ ++L A+ L + T+++
Sbjct: 68 LTAEYAMLPAATLDRNPRESMRGKVKGRTH-EISRLIGRSLRAAVDLSELGENTINIDCD 126
Query: 146 VLESGGSDLPVVISCASVALADA-----------GIMMYDLVASVSVSCLGKNLLIDPVL 194
VL++ G I+ A VALADA G + D VA+VSV + + +D
Sbjct: 127 VLQADGGTRTASITGAYVALADAISHLQKQGVVPGNPLKDPVAAVSVGVIDGAVCLDLPY 186
Query: 195 EEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAK 242
EE+S D + + R+ ++ TGE +T +E ++ LD + K
Sbjct: 187 EEDSRADVDMNVIMQNGRF--VEIQGTGEHNTFDRDELARI-LDFAEK 231
>gi|261250540|ref|ZP_05943115.1| ribonuclease PH [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|323495223|ref|ZP_08100305.1| ribonuclease PH [Vibrio brasiliensis LMG 20546]
gi|417953400|ref|ZP_12596446.1| ribonuclease PH [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|260939109|gb|EEX95096.1| ribonuclease PH [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|323310483|gb|EGA63665.1| ribonuclease PH [Vibrio brasiliensis LMG 20546]
gi|342817274|gb|EGU52158.1| ribonuclease PH [Vibrio orientalis CIP 102891 = ATCC 33934]
Length = 238
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 97/230 (42%), Gaps = 20/230 (8%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RP+ R Q RP A GS EFGNTKV+ V PR K K +
Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60
Query: 90 SNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L + G QG + ++ ++L + LE + V V V++
Sbjct: 61 AEYGMLPRSTHSRMRREAASGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA-------GIM----MYDLVASVSVSCLGKNLLIDPVLEEE 197
+ G IS ASVA+ADA G + M VA+VSV LG+++L D E+
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVEKGKLKANPMKGHVAAVSVGILGEDILCDLEYTED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIM 247
S D + + M + ++ T E E M+L A+ + +I+
Sbjct: 181 SAADTDMNV-VMTEDGRMIEVQGTAEGEPFTHAELMKLLESATKGITEIV 229
>gi|430743497|ref|YP_007202626.1| polyribonucleotide nucleotidyltransferase [Singulisphaera
acidiphila DSM 18658]
gi|430015217|gb|AGA26931.1| polyribonucleotide nucleotidyltransferase [Singulisphaera
acidiphila DSM 18658]
Length = 755
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 103/235 (43%), Gaps = 31/235 (13%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIV-SVFGPRESKK---AMMY 89
+D RPD RG RP G + A GSA + G T+ +V +V G ++ +M
Sbjct: 317 LDGKRPDGRGPRDLRPIHCEVGVLPRAHGSAIFQRGETQALVTTVLGTSADEQRVDGIMD 376
Query: 90 SNIGRLNCNVSYTTFAT----PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFAL 145
+ + + +FA P+RG G ++ +++ + T T+ V +
Sbjct: 377 EFSKKFMLDYNMPSFAVGEVRPIRGPGRREIGHGALAERSVAPILPGSTRFPYTIRVVSD 436
Query: 146 VLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKN------LLIDPVLEEESY 199
+LES GS + A+++L DAG+ + D V +S+ + LL D + +E+ +
Sbjct: 437 ILESNGSSSMASVCGATLSLMDAGVPISDPVGGISIGLVEDEASGRFVLLTDIIGDEDHF 496
Query: 200 QDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEA 254
D +A TQ VTG +QL L + +I+++ L++A
Sbjct: 497 GDMDFKVAG-------TQRGVTG----------IQLDLKNAGITEEIVKATLEQA 534
>gi|198433180|ref|XP_002130542.1| PREDICTED: similar to predicted protein isoform 1 [Ciona
intestinalis]
Length = 235
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 17/155 (10%)
Query: 55 GAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQGS- 113
A+ +A GSA+ G T V+V+V+GP + K+ I + V + P G +
Sbjct: 24 NALKNADGSAFYSQGETSVMVAVYGPGDLKET--KQEIDKALVEVDFR----PKLGSPTV 77
Query: 114 DHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMY 173
+ K + E AI+L P+T + +++ GS L I+ VAL DAG+ M
Sbjct: 78 NEKYLERFVQGVCENAIMLALHPRTAFAIIVQIMQDQGSLLSCAINAVCVALQDAGVSMK 137
Query: 174 DLVASVSVSCLGKN----------LLIDPVLEEES 198
L +V+V+ ++ L+I+P ++EES
Sbjct: 138 HLPVAVTVALRKESESELEDATDVLIINPTIKEES 172
>gi|153837893|ref|ZP_01990560.1| ribonuclease PH [Vibrio parahaemolyticus AQ3810]
gi|260902523|ref|ZP_05910918.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus AQ4037]
gi|433656504|ref|YP_007273883.1| Ribonuclease PH [Vibrio parahaemolyticus BB22OP]
gi|149748756|gb|EDM59601.1| ribonuclease PH [Vibrio parahaemolyticus AQ3810]
gi|308109638|gb|EFO47178.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus AQ4037]
gi|432507192|gb|AGB08709.1| Ribonuclease PH [Vibrio parahaemolyticus BB22OP]
Length = 238
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 96/227 (42%), Gaps = 22/227 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RP+ R Q RP A GS EFGNTKV+ V PR K K +
Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 60
Query: 90 SNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L T G QG + ++ ++L + L+ + + V V++
Sbjct: 61 AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADAGIMMYD-----------LVASVSVSCLGKNLLIDPVLEEE 197
+ G IS ASVA+ADA + D VA+VSV LG +L D E+
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLLGDEVLCDLEYVED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLG 244
S D + + M ++ ++ T E P +E + L+ SAK+G
Sbjct: 181 SAADTDMNV-VMTEEGKMIEIQGTAE-GEPFSHEQLMALLE-SAKVG 224
>gi|283458297|ref|YP_003362916.1| RNase PH [Rothia mucilaginosa DY-18]
gi|422325020|ref|ZP_16406057.1| ribonuclease PH [Rothia mucilaginosa M508]
gi|283134331|dbj|BAI65096.1| RNase PH [Rothia mucilaginosa DY-18]
gi|353343729|gb|EHB88044.1| ribonuclease PH [Rothia mucilaginosa M508]
Length = 243
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 98/237 (41%), Gaps = 23/237 (9%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R ++ RP G +A GSA EFGNT+V+ + + + G +
Sbjct: 5 REDGRALNELRPITITRGWSRNAEGSALIEFGNTRVLCTASFTEGVPRWLKGEGKGWVTA 64
Query: 98 NVSYTTFATPVRGQ--------GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ AT R G + S ++ ++L I ++ + T+ + VL++
Sbjct: 65 EYAMLPRATNTRSSRESLKGRVGGRTHEISRLIGRSLRAVINMDELGENTIVLDCDVLQA 124
Query: 150 GGSDLPVVISCASVALADA-------GIM------MYDLVASVSVSCLGKNLLID-PVLE 195
G I+ A VALADA I+ + D V+++SV + ++D P E
Sbjct: 125 DGGTRTASITGAYVALADAISWAKEQKILPAKANPLIDSVSAISVGIIDGTPMLDLPYTE 184
Query: 196 EESYQDGSLMIACMPSRYEVTQLTVTGE-WSTPHFNEAMQLCLDASAKLGKIMRSCL 251
+ + ++ ++ Q T G + N + L L+ +A+L +I R L
Sbjct: 185 DVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRDELNSLLDLALEGTAELAQIQREAL 241
>gi|159128917|gb|EDP54031.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Aspergillus fumigatus A1163]
Length = 269
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 73/152 (48%), Gaps = 10/152 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR-- 94
LR D R +++ R + ++SGS++ GNT ++ SV GP E K+
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSFLSMGNTSIMCSVHGPAEGKRGDATGGAAGSA 73
Query: 95 ---LNCNVSYTTFA---TPVRGQGSDHKD--FSSMLHKALEGAIILETFPKTTVDVFALV 146
+ +V+ FA R GSD + +++L A + + +P +T+ + V
Sbjct: 74 GAVVEVDVNIAGFAGVDRRRRAGGSDRQSSRIATILRSAFQSHLHTHLYPHSTISIHVSV 133
Query: 147 LESGGSDLPVVISCASVALADAGIMMYDLVAS 178
L + GS L ++ ++AL DAGI M L+++
Sbjct: 134 LSADGSLLAAAVNACTLALVDAGIPMPGLLSA 165
>gi|417321068|ref|ZP_12107608.1| ribonuclease PH [Vibrio parahaemolyticus 10329]
gi|328471748|gb|EGF42625.1| ribonuclease PH [Vibrio parahaemolyticus 10329]
Length = 238
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 96/227 (42%), Gaps = 22/227 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RP+ R Q RP A GS EFGNTKV+ V PR K K +
Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 60
Query: 90 SNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L T G QG + ++ ++L + L+ + + V V++
Sbjct: 61 AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADAGIMMYD-----------LVASVSVSCLGKNLLIDPVLEEE 197
+ G IS ASVA+ADA + D VA+VSV LG +L D E+
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLLGDEVLCDLEYVED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLG 244
S D + + M ++ ++ T E P +E + L+ SAK+G
Sbjct: 181 SAADTDMNV-VMTEEGKMIEIQGTAE-GEPFSHEQLMALLE-SAKVG 224
>gi|407401878|gb|EKF29006.1| exosome-associated protein 4, putative,3' exoribonuclease, putative
[Trypanosoma cruzi marinkellei]
Length = 229
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 67/154 (43%), Gaps = 8/154 (5%)
Query: 63 SAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFA------TPVRGQGSDHK 116
SA E GNT+VI +V P++ N G + C V A + R + K
Sbjct: 29 SACVELGNTRVICAVHHPQQLVDEY-RGNRGHVACTVQRCASAGSHAAGSAQRSVVTPEK 87
Query: 117 DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLV 176
D S L E +ILE P+ V+V +L G V + S AL G MYD+
Sbjct: 88 DMSLALEGVAEEVVILEKIPQLLVEVVVEILAEDGGVWDAVATSMSAALVSGGFEMYDVF 147
Query: 177 ASVSVSCLGKN-LLIDPVLEEESYQDGSLMIACM 209
++ S + L +++DP EES S ++ M
Sbjct: 148 SACSSALLSDGAVVLDPDAAEESNAQASALVCVM 181
>gi|71415718|ref|XP_809916.1| exosome-associated protein 4 [Trypanosoma cruzi strain CL Brener]
gi|70874370|gb|EAN88065.1| exosome-associated protein 4, putative [Trypanosoma cruzi]
Length = 229
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 67/155 (43%), Gaps = 10/155 (6%)
Query: 63 SAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDH------- 115
SA E GNT+VI +V P++ S GR+ C V + A GS
Sbjct: 29 SACVELGNTRVICAVHHPQQLVDEYRGSR-GRVACTVRRSASAGS-HAAGSAQPSVVTPE 86
Query: 116 KDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDL 175
KD S L E +ILE P+ V+V +L G V + S AL G MYDL
Sbjct: 87 KDMSLALEGVAEEVVILEKIPQLLVEVVVEILAEDGGVWDAVATSMSAALVSGGFEMYDL 146
Query: 176 VASVSVSCLGKN-LLIDPVLEEESYQDGSLMIACM 209
++ + L +++DP EES S ++ M
Sbjct: 147 FSACGSALLSDGAVVLDPDAAEESNAQASALVCLM 181
>gi|302872107|ref|YP_003840743.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
obsidiansis OB47]
gi|302574966|gb|ADL42757.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
obsidiansis OB47]
Length = 701
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 103/240 (42%), Gaps = 26/240 (10%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI-VSVFGPR------------ESK 84
RPD R F + RP + G + GSA + G T+V+ V+ G + E+K
Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372
Query: 85 KAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILE-TFPKTTVDVF 143
+ M + N + S P+RG G ++ +ALE I E FP T+ +
Sbjct: 373 RYMHHYNFPPFSTGES-----KPIRGPGRREIGHGALAERALEPVIPSEDEFP-YTIRLV 426
Query: 144 ALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKN-----LLIDPVLEEES 198
+ VL S GS + +++AL DAG+ + VA +S+ + K+ LL D E+
Sbjct: 427 SEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKDDDSFILLTDIQGIEDF 486
Query: 199 YQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNE-AMQLCLDASAKLGKIMRSCLKEAASD 257
+ D +A QL + T E A+ +A K+ M++ + + S+
Sbjct: 487 FGDMDFKVAGTREGITAIQLDIKIHGLTREIIEKALYQAKEARLKILDFMQTVIDKPRSE 546
>gi|123464254|ref|XP_001317083.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas
vaginalis G3]
gi|121899808|gb|EAY04860.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas
vaginalis G3]
Length = 203
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 12/163 (7%)
Query: 41 SRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVS 100
SR + + R G S+ GS+ G T+VIV++ GP K M++ I N+
Sbjct: 7 SRVYEEEREIACEKGLCISSQGSSRVRVGKTEVIVNIVGP----KQMVFREIETGKVNIK 62
Query: 101 YTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISC 160
++ ++ + ++ A+E ++ + +P + ++V ++ G ++
Sbjct: 63 AKSYP--------ENPTINKIVADAIENSLKCDAYPDSNLEVSVTIVCDDGGLKACAVNA 114
Query: 161 ASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGS 203
+AL DAG M L+A+ S++ G L+ DP EE DG+
Sbjct: 115 TILALVDAGFEMNHLLAASSLAVKGDILVNDPNASEEELYDGA 157
>gi|300121002|emb|CBK21384.2| unnamed protein product [Blastocystis hominis]
Length = 204
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 83/196 (42%), Gaps = 9/196 (4%)
Query: 68 FGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATP--------VRGQGSDHKDFS 119
GNTKV+ V+GPR++ + +I VS P V +++
Sbjct: 1 MGNTKVLAVVYGPRDAGSKSSH-DIDNDKATVSAGVTMAPYCGTERRVVHMNSRICTEYA 59
Query: 120 SMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASV 179
+ + E I+ +P +T+ + + ++ G +LP ++ A +A+ DAGI + D S+
Sbjct: 60 QAIRRCFEHVILTTLYPHSTISIHCTIFQADGGELPCCLNAALLAIIDAGIDILDFQVSL 119
Query: 180 SVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDA 239
+V + +L D E L +A +P + T T+ F + + +
Sbjct: 120 NVGYMDNTILFDMNYVESHLNGILLTVAYLPKSDQFTLTTLNSNIPLELFEDVLDAAKEG 179
Query: 240 SAKLGKIMRSCLKEAA 255
++ I++ + E A
Sbjct: 180 CKQVYAILKDHVLENA 195
>gi|70989313|ref|XP_749506.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Aspergillus fumigatus Af293]
gi|66847137|gb|EAL87468.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Aspergillus fumigatus Af293]
Length = 269
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 73/152 (48%), Gaps = 10/152 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR-- 94
LR D R +++ R + ++SGS++ GNT ++ SV GP E K+
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSFLSMGNTSIMCSVHGPAEGKRGDATGGAAGSA 73
Query: 95 ---LNCNVSYTTFA---TPVRGQGSDHKD--FSSMLHKALEGAIILETFPKTTVDVFALV 146
+ +V+ FA R GSD + +++L A + + +P +T+ + V
Sbjct: 74 GAVVEVDVNIAGFAGVDRRRRAGGSDRQSSRIATILRSAFQSHLHTHLYPHSTISIHVSV 133
Query: 147 LESGGSDLPVVISCASVALADAGIMMYDLVAS 178
L + GS L ++ ++AL DAGI M L+++
Sbjct: 134 LSADGSLLAAAVNACTLALVDAGIPMPGLLSA 165
>gi|145251293|ref|XP_001397160.1| 3' exoribonuclease family protein [Aspergillus niger CBS 513.88]
gi|134082691|emb|CAK42584.1| unnamed protein product [Aspergillus niger]
gi|350636483|gb|EHA24843.1| hypothetical protein ASPNIDRAFT_53512 [Aspergillus niger ATCC 1015]
Length = 324
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 75/303 (24%), Positives = 120/303 (39%), Gaps = 62/303 (20%)
Query: 20 PTRKTRPPIFSGSDVDWL-----RPD-SRGFHQCRPAFFRTGAVNSASGSAYAEFGNT-- 71
P TRP +F+ S RP R + R F +TG + SASGS+Y EF +
Sbjct: 10 PPSGTRPAVFASSLKSASSISTGRPRRQRQPDELRKIFLKTGLIPSASGSSYLEFEPSAS 69
Query: 72 ------------------KVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG--- 110
K+ +V GP+ ++ +S L +V Y FA R
Sbjct: 70 LAAARSNPQSLIPPSSALKLACTVHGPKPLPRSASFSPNVVLTTHVKYAPFAARQRKGHI 129
Query: 111 QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES----------GGSDLP----- 155
+ + +D L AL G I+ E +PK+ +D+ +LE+ D P
Sbjct: 130 RDASERDLGVHLETALRGVIVAERWPKSGLDITITILEAEDDRWWGDAPDSHDAPWGMMN 189
Query: 156 VVISCASVALADAG---IMMYDLVASVSVSCL------GKNLLIDPVLEEESYQDGSLMI 206
V+ C + A A I DLVA + + G++ +L+ + + S++
Sbjct: 190 VLAGCITAASAAIADARIDCLDLVAGGVAAIVSDEPAEGESSTPKLMLDTDPAEHKSILS 249
Query: 207 AC----MPSRYEVTQLTVTGEWSTPHFNEAMQ-----LCLDASAKLGKIMRSCLKEAASD 257
AC MPSR E+T+L + G+ S Q +D + + + L EA +
Sbjct: 250 ACVVAYMPSRDEITELWLKGDHSKASLGTTDQSLTHESLIDGAVNAARGAHTVLAEAVKE 309
Query: 258 EQE 260
E
Sbjct: 310 SAE 312
>gi|254226345|ref|ZP_04919935.1| ribonuclease PH [Vibrio cholerae V51]
gi|125621150|gb|EAZ49494.1| ribonuclease PH [Vibrio cholerae V51]
Length = 257
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 106/249 (42%), Gaps = 27/249 (10%)
Query: 15 YSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI 74
Y+P PT +P D +R D+R Q RP A GS EFGNTKV+
Sbjct: 3 YNPA-PTELIQPQ----EGRDPMRQDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVL 57
Query: 75 ----VSVFGPRESK---KAMMYSNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKAL 126
+ PR K K + + G L T G QG + ++ ++L
Sbjct: 58 CNASIEEGVPRWLKGQGKGWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSL 117
Query: 127 EGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADA-------GIM----MYDL 175
+ LE + + V V+++ G I+ ASVALADA G + M
Sbjct: 118 RAVVDLEAMGEIMITVDCDVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGH 177
Query: 176 VASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQL 235
VA+VSV LG+++L D E+S D + + M ++ ++ T E P +E + L
Sbjct: 178 VAAVSVGILGEDVLCDLEYVEDSAADTDMNV-VMTEEGKMIEIQGTAE-GEPFSHEQL-L 234
Query: 236 CLDASAKLG 244
L A AK G
Sbjct: 235 ELLAVAKKG 243
>gi|343506861|ref|ZP_08744323.1| ribonuclease PH [Vibrio ichthyoenteri ATCC 700023]
gi|342801209|gb|EGU36687.1| ribonuclease PH [Vibrio ichthyoenteri ATCC 700023]
Length = 238
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 83/207 (40%), Gaps = 20/207 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RP+ R Q RP A GS EFGNTKV+ + M G +
Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNASIEENVPHWMKGKGKGWVT 60
Query: 97 CNVSYTTFATPVRG--------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
AT R QG + ++ ++L + L+ + + V V++
Sbjct: 61 AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA-------GIM----MYDLVASVSVSCLGKNLLIDPVLEEE 197
+ G IS ASVALADA G + M VA+VSV LG+N+L D E+
Sbjct: 121 ADGGTRTASISGASVALADAFQHLIEKGKLKKNPMTGHVAAVSVGLLGENVLCDLEYVED 180
Query: 198 SYQDGSL-MIACMPSRYEVTQLTVTGE 223
S D + ++ R Q T GE
Sbjct: 181 SAADTDMNVVMTEDGRMIEVQGTAEGE 207
>gi|260791023|ref|XP_002590540.1| hypothetical protein BRAFLDRAFT_124523 [Branchiostoma floridae]
gi|229275734|gb|EEN46551.1| hypothetical protein BRAFLDRAFT_124523 [Branchiostoma floridae]
Length = 219
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 85/198 (42%), Gaps = 6/198 (3%)
Query: 62 GSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSSM 121
GSA G+T V+ +V+GP E K + + L F + G K +
Sbjct: 26 GSASVRQGDTSVLAAVYGPGEVKMSEEIIDKATLK-----VIFKPKIGLPGCAEKLQERL 80
Query: 122 LHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSV 181
L E ++ P++ V++ V++ GS L I+ A +AL D+ + M LV++V+
Sbjct: 81 LRNTCESVVLAILHPRSGVNIVLQVIQDSGSLLSCCINAACMALVDSAVPMKCLVSAVTC 140
Query: 182 SCLGK-NLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDAS 240
+ + + +++DP ++E L A V + G ++ + E + C AS
Sbjct: 141 AVMEEGRIVLDPDSKQEKESSAVLTFAFDSRENNVVTCSTKGCYTPEKYQECLSACGAAS 200
Query: 241 AKLGKIMRSCLKEAASDE 258
+ R ++ S E
Sbjct: 201 KNISSFFRQAVERRMSKE 218
>gi|224089018|ref|XP_002308603.1| predicted protein [Populus trichocarpa]
gi|222854579|gb|EEE92126.1| predicted protein [Populus trichocarpa]
Length = 243
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 72/168 (42%), Gaps = 10/168 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R Q RP ++ A GSA G+TKV +V+GP+ K N +
Sbjct: 5 RDDGRSPSQLRPLSCSHNVLHRAHGSASWSQGDTKVSAAVYGPKAGTKK--NENPEKACV 62
Query: 98 NVSYTTFATPVRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPV 156
V + P GQ G +++ +L + L+ IL P TT + + G+ L
Sbjct: 63 EVIW----KPKTGQIGKLEREYEMILKRTLQSICILTLNPNTTTSIIVQFVNDDGALLVC 118
Query: 157 VISCASVALADAGIMMYDLVASVSVSCLGK--NLLIDPVLEEESYQDG 202
I+ A AL DA I M L ++ CL +++DP EE G
Sbjct: 119 AINAACAALVDARIPMKHLAVAI-CCCLADVGYVILDPTKLEEQKMKG 165
>gi|424040617|ref|ZP_17778730.1| ribonuclease PH [Vibrio cholerae HENC-02]
gi|408891660|gb|EKM29399.1| ribonuclease PH [Vibrio cholerae HENC-02]
Length = 238
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 92/227 (40%), Gaps = 22/227 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RP+ R Q RP A GS EFGNTKV+ V PR K K +
Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 60
Query: 90 SNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L T G QG + ++ ++L + L+ + + V V++
Sbjct: 61 AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADAGIMMYD-----------LVASVSVSCLGKNLLIDPVLEEE 197
+ G IS ASVA+ADA + D VA+VSV LG ++L D E+
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLLGDDVLCDLEYVED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLG 244
S D + + E + + G F+ + L SAK+G
Sbjct: 181 SAADTDMNVVMTE---EGKMIEIQGTAEGEPFSHDQLMALLESAKVG 224
>gi|395773976|ref|ZP_10454491.1| ribonuclease PH [Streptomyces acidiscabies 84-104]
Length = 245
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 92/240 (38%), Gaps = 23/240 (9%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R Q RP G A GS FG+TKV + + S G +
Sbjct: 3 RIDGRTPEQLRPVTLERGWSKHAEGSVLVSFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62
Query: 98 NVSYTTFATPVRGQ--------GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
S AT RG G + S ++ ++L I + + T+ + VL++
Sbjct: 63 EYSMLPRATNTRGDRESVRGRIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122
Query: 150 GGSDLPVVISCASVALADAGIM-------------MYDLVASVSVSCLGKNLLIDPVLEE 196
G I+ A VALADA + V++VSV +G L+D EE
Sbjct: 123 DGGTRTAAITGAYVALADAVAWAQGRKLIKANRQPITGTVSAVSVGIVGGVPLLDLCYEE 182
Query: 197 ESYQDGSLMIACM-PSRYEVTQLTVTGE-WSTPHFNEAMQLCLDASAKLGKIMRSCLKEA 254
+ D + + C R+ Q T E ++ N + L + L + R+ L++A
Sbjct: 183 DVRADTDMNVVCTGDGRFVEVQGTAEAEPFARDELNSLLDLAVSGCTDLAALQRAALEQA 242
>gi|397669729|ref|YP_006511264.1| tRNA nucleotidyltransferase [Propionibacterium propionicum F0230a]
gi|395141466|gb|AFN45573.1| tRNA nucleotidyltransferase [Propionibacterium propionicum F0230a]
Length = 239
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 103/241 (42%), Gaps = 31/241 (12%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESKKAMMYSNI 92
LR D R Q R G ++ A GS EFG T+V+ V+V PR + + +
Sbjct: 3 LRIDGRRADQLREVRITRGWLDHAEGSVLVEFGKTRVLVAASVTVGVPRWRRD----TGL 58
Query: 93 GRLNCNVSYTTFAT-------PVRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFA 144
G + S AT VRG+ G + S ++ ++L + + T+ +
Sbjct: 59 GWVTAEYSMLPRATHSRSDRESVRGRIGGRTHEISRLVGRSLRAVVDYSALGENTIVLDC 118
Query: 145 LVLESGGSDLPVVISCASVALADA-----------GIMMYDLVASVSVSCLGKNLLIDPV 193
VL++ G I+ A VALADA G + D VA+VSV + L+D
Sbjct: 119 DVLQADGGTRTAAITGAYVALADAVAHLRELDVLKGEPLKDSVAAVSVGFVEGVPLLDLA 178
Query: 194 LEEESYQDGSLMIACMPSRYEVTQLTVTGE---WSTPHFNEAMQLCLDASAKLGKIMRSC 250
EE+S Q G+ M M + ++ T E ++ N+ + L A+L ++ R
Sbjct: 179 YEEDS-QAGTDMNIVMTGSGDFIEVQGTAERTPFNRADLNQLLDLGAAGCAELTRLQREA 237
Query: 251 L 251
L
Sbjct: 238 L 238
>gi|255326296|ref|ZP_05367382.1| tRNA nucleotidyltransferase [Rothia mucilaginosa ATCC 25296]
gi|255296750|gb|EET76081.1| tRNA nucleotidyltransferase [Rothia mucilaginosa ATCC 25296]
Length = 243
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 98/237 (41%), Gaps = 23/237 (9%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R ++ RP G +A GSA EFGNT+V+ + + + G +
Sbjct: 5 REDGRALNELRPITITRGWSRNAEGSALIEFGNTRVLCTASFTEGVPRWLKGEGKGWVTA 64
Query: 98 NVSYTTFATPVRGQ--------GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ AT R G + S ++ ++L I ++ + T+ + VL++
Sbjct: 65 EYAMLPRATNTRSSRESLKGRVGGRTHEISRLIGRSLRAVINMDELGENTIVLDCDVLQA 124
Query: 150 GGSDLPVVISCASVALADA-------GIM------MYDLVASVSVSCLGKNLLID-PVLE 195
G I+ A VALADA I+ + D V+++SV + ++D P E
Sbjct: 125 DGGTRTASITGAYVALADAISWAKEQKILPAKANPLIDSVSAISVGIIDGTPMLDLPYTE 184
Query: 196 EESYQDGSLMIACMPSRYEVTQLTVTG-EWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
+ + ++ ++ Q T G + N + L L+ +A+L +I R L
Sbjct: 185 DVRAETDMNVVVTGSGKFVEVQGTAEGVPFDRDELNSLLDLALEGTAELAQIQREAL 241
>gi|288817498|ref|YP_003431845.1| ribonuclease PH [Hydrogenobacter thermophilus TK-6]
gi|384128268|ref|YP_005510881.1| ribonuclease PH [Hydrogenobacter thermophilus TK-6]
gi|288786897|dbj|BAI68644.1| ribonuclease PH [Hydrogenobacter thermophilus TK-6]
gi|308751105|gb|ADO44588.1| ribonuclease PH [Hydrogenobacter thermophilus TK-6]
Length = 253
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 98/236 (41%), Gaps = 25/236 (10%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+R D R ++ RP + GS EFGNTKVI +V + G +
Sbjct: 1 MRKDGRKPNELRPIRIVRDYLQHPEGSCLIEFGNTKVICTVSVQDGVPPFLKGKGQGWIT 60
Query: 97 CNVSYTTFATPVRG---------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVL 147
S AT R G H + M+ +A+ A+ L + T + V+
Sbjct: 61 AEYSMLPRATITRNVRESVQGRISGRTH-EIQRMIGRAMRTALDLTKIGERTFWIDCDVI 119
Query: 148 ESGGSDLPVVISCASVALADAGIMMY-----------DLVASVSVSCLGKNLLIDPVLEE 196
++ G I+ A VA+ADA I +Y D VASVSV + +L+D EE
Sbjct: 120 QADGGTRTASITGAFVAIADAVIKLYNEGILSSTPIKDFVASVSVGTVNGQILLDLNYEE 179
Query: 197 ESYQDGSLMIACMPSRYEVTQLTVTGE---WSTPHFNEAMQLCLDASAKLGKIMRS 249
+S + + S ++++ GE +S F+ + L L ++L ++ R+
Sbjct: 180 DSTASVDMNVVATGS-GRISEIQALGEENTFSREEFDRMLSLALAGISQLIELQRA 234
>gi|357017435|gb|AET50746.1| hypothetical protein [Eimeria tenella]
Length = 320
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 93/241 (38%), Gaps = 45/241 (18%)
Query: 54 TGAVNSASGSAYAEFGNTKVIVSVFGPR----------------------ESKKAMMYSN 91
+G++ S G A G TKV+ V+GP+ + AM +
Sbjct: 57 SGSLASCDGRAVVSLGCTKVMALVYGPQPSSNMSTLSTSSSNTWSVSCTDNTSAAMQMMH 116
Query: 92 IGR-------------LNCNVSYTTFATPVRGQGS-DHKDFSSMLHKALEGAIILETFPK 137
G+ + C+V R + + D + ++ + A EG I+ + +
Sbjct: 117 EGKQGLARGELAVPVSVVCSVGLVDSCVRTRSRYTPDAAEIAAAVRTAAEGIILRRLYTQ 176
Query: 138 TTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSV---------SCLGKNL 188
T + + LVL GS L + AS+ALADAG+ M DL+ S +V L
Sbjct: 177 TRITISILVLADDGSILSASLIAASLALADAGVAMRDLLPSCTVLLLPQQFPQQQQEPLL 236
Query: 189 LIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMR 248
L+DP +E L + + L +TG + + ++CL + M+
Sbjct: 237 LVDPTSDETRSGGPCLTLGVTAETNNIVALQLTGRVDRQTYEKMFEVCLRGCLATAECMK 296
Query: 249 S 249
+
Sbjct: 297 T 297
>gi|82523945|emb|CAI78667.1| ribonuclease PH [uncultured delta proteobacterium]
Length = 242
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 23/187 (12%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
W R R +++ RP + + +GSA EFGNTKVI + E K A N GR
Sbjct: 2 WQRSAGRKYNELRPINITNNFLKTTAGSALVEFGNTKVICA--ATLEDKSAPFLKNTGRG 59
Query: 96 NCNVSY------TTFATP---VRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFAL 145
Y T TP RG+ G + ++ ++L L +F + T+ +
Sbjct: 60 WVTAEYSMLPASTQTRTPRESTRGKVGGRTHEIQRLIGRSLRAVCDLNSFGEKTIYMDCD 119
Query: 146 VLESGGSDLPVVISCASVALADA-------GIM----MYDLVASVSVSCLGKNLLIDPVL 194
V+++ G I+ +AL + GI+ + D V+++SV + +L+D
Sbjct: 120 VIQADGGTRTASITGGFIALVELLKKMKADGIVKEIPVNDYVSAISVGIIENKILLDLEY 179
Query: 195 EEESYQD 201
EE+S D
Sbjct: 180 EEDSKAD 186
>gi|451973224|ref|ZP_21926418.1| ribonuclease PH [Vibrio alginolyticus E0666]
gi|451930800|gb|EMD78500.1| ribonuclease PH [Vibrio alginolyticus E0666]
Length = 238
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 96/227 (42%), Gaps = 22/227 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RP+ R Q RP A GS EFGNTKV+ V PR K K +
Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 60
Query: 90 SNIGRL-NCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L S T QG + ++ ++L + L+ + + V V++
Sbjct: 61 AEYGMLPRATHSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADAGIMMYD-----------LVASVSVSCLGKNLLIDPVLEEE 197
+ G IS ASVA+ADA + D VA+VSV LG +L D E+
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLLGDEVLCDLEYVED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLG 244
S D + + M ++ ++ T E P +E + L+ SAK+G
Sbjct: 181 SAADTDMNV-VMTEEGKMIEIQGTAE-GEPFSHEQLMALLE-SAKIG 224
>gi|121728030|ref|ZP_01681069.1| ribonuclease PH [Vibrio cholerae V52]
gi|227116607|ref|YP_002818503.1| ribonuclease PH [Vibrio cholerae O395]
gi|121629733|gb|EAX62152.1| ribonuclease PH [Vibrio cholerae V52]
gi|146315337|gb|ABQ19876.1| ribonuclease PH [Vibrio cholerae O395]
gi|227012057|gb|ACP08267.1| ribonuclease PH [Vibrio cholerae O395]
Length = 257
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 101/249 (40%), Gaps = 27/249 (10%)
Query: 15 YSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI 74
Y+P PT +P D +RPD+R Q R A GS EFGNTKV+
Sbjct: 3 YNPA-PTELIQPQ----EGRDPMRPDNRAADQVRSIKITRHYTAYAEGSVLVEFGNTKVL 57
Query: 75 ----VSVFGPRESK---KAMMYSNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKAL 126
+ PR K K + + G L T G QG + ++ ++L
Sbjct: 58 CNASIEEGVPRWLKGQGKGWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSL 117
Query: 127 EGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADA-------GIM----MYDL 175
+ LE + + V V+++ G I+ ASVALADA G + M
Sbjct: 118 RAVVDLEAMGEIMITVDCDVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGH 177
Query: 176 VASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQL 235
VA+VSV LG+++L D E+S D + + E + + G F+ L
Sbjct: 178 VAAVSVGILGEDVLCDLEYVEDSAADTDMNVVMTE---EGKMIEIQGTAEGEPFSHEQLL 234
Query: 236 CLDASAKLG 244
L A AK G
Sbjct: 235 ELLAVAKKG 243
>gi|308481795|ref|XP_003103102.1| hypothetical protein CRE_25738 [Caenorhabditis remanei]
gi|308260478|gb|EFP04431.1| hypothetical protein CRE_25738 [Caenorhabditis remanei]
Length = 256
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 91/218 (41%), Gaps = 12/218 (5%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI-----GRLNCNVSYT 102
RP + G + GS YAEFGNT+V+ ++ + N G ++
Sbjct: 37 RPLCVKCGVFGAQDGSGYAEFGNTRVLAQMYEKKHLTSVNKLYNFSTGPEGDGKWEEAHA 96
Query: 103 TFATPVRGQGSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISC 160
++G ++ K + + L +L I + +P +D+ VL G L I+
Sbjct: 97 KVTITLKGVENETKVAELRADLTSSLSAVIFINKYPGKVIDIEVTVLSDDGGVLSTAITA 156
Query: 161 ASVALADAGIMMYDLVASVSVSCLGK-NLLIDPVLEEESYQDGSLMIACMPSRYEVTQLT 219
++ALA +GI L AS V+ + + DP E G + A +P+ + T +
Sbjct: 157 VTLALAHSGIEHMGLTASAHVALKSNGDYITDPSTSEAEDAIGGVTFAFVPNLGQTTCVN 216
Query: 220 VTG----EWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
+ G + ++P A Q + + K + + +KE
Sbjct: 217 LYGRIPLKATSPLLEFARQRAIALVPAIHKAVVNSVKE 254
>gi|255943151|ref|XP_002562344.1| Pc18g05170 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587077|emb|CAP94741.1| Pc18g05170 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 265
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 8/148 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK---AMMYSNIG 93
LR D R +++ R + ++SGS+Y GNT ++ SV GP E ++ S
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTSIMCSVHGPAEGRRGDGGSAGSGHA 73
Query: 94 RLNCNVSYTTFA---TPVRGQGSDHKD--FSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ +V+ FA R GSD + ++ L A + + +P +T+ + VL
Sbjct: 74 VVEVDVNVAGFAGVDRKRRAGGSDRQSSRIATTLRSAFQSHLHTYLYPHSTISIHVSVLS 133
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLV 176
+ GS L ++ ++AL DAGI M L+
Sbjct: 134 ADGSLLAAALNACTLALVDAGIPMPGLL 161
>gi|91225015|ref|ZP_01260274.1| ribonuclease PH [Vibrio alginolyticus 12G01]
gi|91190261|gb|EAS76531.1| ribonuclease PH [Vibrio alginolyticus 12G01]
Length = 238
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 96/227 (42%), Gaps = 22/227 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RP+ R Q RP A GS EFGNTKV+ V PR K K +
Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWIT 60
Query: 90 SNIGRL-NCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L S T QG + ++ ++L + L+ + + V V++
Sbjct: 61 AEYGMLPRATHSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADAGIMMYD-----------LVASVSVSCLGKNLLIDPVLEEE 197
+ G IS ASVA+ADA + D VA+VSV LG +L D E+
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLLGDEVLCDLEYVED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLG 244
S D + + M ++ ++ T E P +E + L+ SAK+G
Sbjct: 181 SAADTDMNV-VMTEEGKMIEIQGTAE-GEPFSHEQLMALLE-SAKVG 224
>gi|452844097|gb|EME46031.1| hypothetical protein DOTSEDRAFT_86692 [Dothistroma septosporum
NZE10]
Length = 251
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 103/230 (44%), Gaps = 13/230 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMM--YSNIGR 94
LR D R +++ R + +A GS+Y E GNTKVI +V GPR++++ S
Sbjct: 13 LRTDGRRWNELRRIHGQMSTQAAADGSSYFEMGNTKVICTVHGPRQARQGGSGGQSREAA 72
Query: 95 LNCNVSYTTFATPVRG-QGSDHKDFSSM---LHKALEGAIILETFPKTTVDVFALVLESG 150
++ + F+ R +G + K M + A + ++P +T+ + VL
Sbjct: 73 IDVEIGIAGFSGMDRKRRGKNDKRVQEMQYTISSAFASTVFTTSYPHSTITIVLHVLSQD 132
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSV----SCLGKNLLIDPVLEEESYQDGSLMI 206
G+ L ++ A++AL DAG+ M D VA+V+ S + DP+L+ ++ L
Sbjct: 133 GALLAACLNAATLALVDAGVPMKDYVAAVTTGSTASYASNDEEADPLLDLNGVEEQELPF 192
Query: 207 ACMPS---RYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
M + +V L + + + LD ++ I+ ++E
Sbjct: 193 FTMGTSTGEDKVNVLVMETRVQVARLESMVSVGLDGCKQVRGILDGIVRE 242
>gi|312134904|ref|YP_004002242.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
owensensis OL]
gi|311774955|gb|ADQ04442.1| polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
owensensis OL]
Length = 701
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 102/240 (42%), Gaps = 26/240 (10%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI-VSVFGPR------------ESK 84
RPD R F + RP + G + GSA + G T+V+ V+ G + E+K
Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372
Query: 85 KAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILE-TFPKTTVDVF 143
+ M + N + S P+RG G ++ +ALE I E FP T+ +
Sbjct: 373 RYMHHYNFPPFSTGES-----KPIRGPGRREIGHGALAERALEPVIPSEDEFP-YTIRLV 426
Query: 144 ALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKN-----LLIDPVLEEES 198
+ VL S GS + +++AL DAG+ + VA +S+ + K LL D E+
Sbjct: 427 SEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKEDGSFILLTDIQGIEDF 486
Query: 199 YQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNE-AMQLCLDASAKLGKIMRSCLKEAASD 257
+ D +A QL + T E A+ +A K+ M++ + + S+
Sbjct: 487 FGDMDFKVAGTREGITAIQLDIKIHGLTREIIEKALYQAKEARLKILDFMQTIIDKPRSE 546
>gi|126329382|ref|XP_001372178.1| PREDICTED: exosome complex component RRP46-like [Monodelphis
domestica]
Length = 237
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 93/228 (40%), Gaps = 14/228 (6%)
Query: 30 SGSDVDWLRPDSRGFHQCRPAFF--RTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAM 87
SG+D D L P G C F ++ GSA G+T V+V V+GP E K +
Sbjct: 15 SGTDAD-LSPRGSG---CSLRHFACEQNLLSRPDGSASFLQGDTSVLVGVYGPAEVKVSK 70
Query: 88 MYSNIGRLNCNVSYTTFATPVRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALV 146
N L P G G K ++ E ++ P+T++ V +
Sbjct: 71 EIFNKATLE------VILKPKIGLPGVAEKSRERLIRTTCEAVVLGTLHPRTSITVVLQI 124
Query: 147 LESGGSDLPVVISCASVALADAGIMMYDLVASVSVSC-LGKNLLIDPVLEEESYQDGSLM 205
+ GS L ++ A +AL DAG+ + L V+ + L L++DP ++E L
Sbjct: 125 VSDAGSLLACCLNAACLALVDAGVPLRALFCGVTCALDLDGGLVLDPTAKQEKEARAILT 184
Query: 206 IACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
A + ++ T G +S F + + AS + + R L+
Sbjct: 185 FALDSTEQKLLMSTTKGLYSVAEFQQCLAAAQHASLHIFRFYRDSLQR 232
>gi|86607255|ref|YP_476018.1| ribonuclease PH [Synechococcus sp. JA-3-3Ab]
gi|123504955|sp|Q2JRJ9.1|RNPH_SYNJA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|86555797|gb|ABD00755.1| ribonuclease PH [Synechococcus sp. JA-3-3Ab]
Length = 242
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 95/234 (40%), Gaps = 21/234 (8%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
W RPD R Q RP F+ A GS +FG+T V+ + E + + G L
Sbjct: 3 WQRPDGRTAAQLRPISFQRHFTRYAPGSVLVKFGDTHVLCTASVAEEVPPFLQNTGQGWL 62
Query: 96 NCNVSYTTFATPVRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
AT R K + ++ ++L A+ T+ V A VL++
Sbjct: 63 TAEYRMLPTATQQRQPRETLKVSGRTAEIQRLIGRSLRAALDFHKLGSRTITVDADVLQA 122
Query: 150 GGSDLPVVISCASVALADAGIMMY--------------DLVASVSVSCLGKNLLIDPVLE 195
GS I+ VAL DA +Y VA++SV + +L+D E
Sbjct: 123 DGSTRTAAITGGYVALHDAITWLYKQGLLDPAQGSPLRQQVAALSVGIVRGEVLVDLCYE 182
Query: 196 EESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRS 249
E+S + + I M + + ++ T E ++ +Q+ A A + +++R+
Sbjct: 183 EDSQAEVDMNI-VMNEQGALIEIQGTAEAGCFDRSQLLQMLDMAQAGIQELLRA 235
>gi|117928891|ref|YP_873442.1| ribonuclease PH [Acidothermus cellulolyticus 11B]
gi|117649354|gb|ABK53456.1| RNAse PH [Acidothermus cellulolyticus 11B]
Length = 240
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 105/243 (43%), Gaps = 29/243 (11%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R + RP F G + A GS EFG T+V+ + K + +G +
Sbjct: 2 LRVDGRAADELRPVRFTRGWLLHAEGSVLVEFGRTRVLCAASVLEGVPKWRKGTGLGWVT 61
Query: 97 CNVSYTTFAT-------PVRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ AT VRG+ G ++ S ++ ++L + + TV + VL+
Sbjct: 62 GEYAMLPRATTTRTDRESVRGRLGGRTQEISRLVGRSLRACVEPARLGENTVHLDCDVLQ 121
Query: 149 SGGSDLPVVISCASVALADAGIMMYD--------LVASVSVSCLGKNLLID--PVLE--- 195
+ G I+ A +ALADA M D LV SV+ +G ++D PVL+
Sbjct: 122 ADGGTRTAAITGAYLALADACRWMRDHGWVTSDPLVRSVAAVSVG---IVDGVPVLDLCY 178
Query: 196 EESYQDGSLMIACMPSRYEVTQLTVTGEWSTP----HFNEAMQLCLDASAKLGKIMRSCL 251
+E + G+ M M + ++ T E TP + ++L A+L ++ R+ L
Sbjct: 179 DEDVRAGTDMNVVMTGDGDFVEIQGTAE-GTPLRRDEVDALLELATRGCARLTELQRTAL 237
Query: 252 KEA 254
EA
Sbjct: 238 AEA 240
>gi|269965906|ref|ZP_06179999.1| ribonuclease PH [Vibrio alginolyticus 40B]
gi|269829459|gb|EEZ83700.1| ribonuclease PH [Vibrio alginolyticus 40B]
Length = 240
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 96/227 (42%), Gaps = 22/227 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RP+ R Q RP A GS EFGNTKV+ V PR K K +
Sbjct: 3 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 62
Query: 90 SNIGRL-NCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L S T QG + ++ ++L + L+ + + V V++
Sbjct: 63 AEYGMLPRATHSRTRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMITVDCDVIQ 122
Query: 149 SGGSDLPVVISCASVALADAGIMMYD-----------LVASVSVSCLGKNLLIDPVLEEE 197
+ G IS ASVA+ADA + D VA+VSV LG +L D E+
Sbjct: 123 ADGGTRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLLGDEVLCDLEYVED 182
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLG 244
S D + + M ++ ++ T E P +E + L+ SAK+G
Sbjct: 183 SAADTDMNV-VMTEEGKMIEIQGTAE-GEPFSHEQLMALLE-SAKVG 226
>gi|241958204|ref|XP_002421821.1| exosome complex exonuclease, putative; mRNA transport regulator,
putative [Candida dubliniensis CD36]
gi|223645166|emb|CAX39765.1| exosome complex exonuclease, putative [Candida dubliniensis CD36]
Length = 293
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 38/167 (22%)
Query: 49 PAFF-RTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCN--------- 98
P+FF + +++A+GSAY E NT + VS+FGPR + + + ++C
Sbjct: 38 PSFFLKHSIIDNANGSAYLEINNTIIEVSIFGPRPIRGSFIDRASVSIDCKFLPHIIPPM 97
Query: 99 --------VSYTTFATPVRG-----QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFAL 145
+ T RG +HK SS L + ++ILE +PK+T+D+
Sbjct: 98 TNIFNNDSNNNNNNNTISRGYRTGMNNIEHK-LSSYLETCVLSSLILEKYPKSTIDIQVS 156
Query: 146 VLESGGSD--------------LPVVISCASVALADAGIMMYDLVAS 178
++ + L + C S+AL D+GI M D+++S
Sbjct: 157 IISIDKNVGNGGNGGNGSLLWLLQWITCCCSIALIDSGIEMKDIISS 203
>gi|312882913|ref|ZP_07742645.1| ribonuclease PH [Vibrio caribbenthicus ATCC BAA-2122]
gi|309369432|gb|EFP96952.1| ribonuclease PH [Vibrio caribbenthicus ATCC BAA-2122]
Length = 238
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 92/226 (40%), Gaps = 23/226 (10%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RP+ R Q RP A GS EFGNTKV+ + + + G +
Sbjct: 1 MRPNDRLADQIRPIKMTRHYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60
Query: 97 CNVSYTTFATPVR--------GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+T R QG + ++ ++L + LE + + V V++
Sbjct: 61 AEYGMLPRSTHSRMRREASSGKQGGRTLEIQRLIARSLRAVVDLEAMGEMMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA-------GIM----MYDLVASVSVSCLGKNLLIDPVLEEE 197
+ G IS ASVA+ADA G + M VA+VSV LG+++L D E+
Sbjct: 121 ADGGTRTASISGASVAMADAFETLVKSGKLKHNPMKGHVAAVSVGILGQDILCDLEYVED 180
Query: 198 SYQDGSL-MIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAK 242
S D + ++ R Q T GE P + + + LD + K
Sbjct: 181 SAADTDMNVVMTEDGRMIEVQGTAEGE---PFSRQELNVLLDVAEK 223
>gi|407069683|ref|ZP_11100521.1| ribonuclease PH [Vibrio cyclitrophicus ZF14]
Length = 238
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 95/239 (39%), Gaps = 23/239 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RP+ R Q RP A GS EFGNTKV+ + + + G +
Sbjct: 1 MRPNDRAVDQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60
Query: 97 CNVSYTTFATPVRG--------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
AT R QG + ++ ++L + L+ + + V V++
Sbjct: 61 AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAVVDLKVLGEIMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA-------GIM----MYDLVASVSVSCLGKNLLIDPVLEEE 197
+ G IS ASVA+ADA G + M VA+VSV +G L D E+
Sbjct: 121 ADGGTRTASISGASVAMADAINSLLASGKLKKNPMKGHVAAVSVGIVGAQALCDLEYVED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIM---RSCLKE 253
S D + + M ++ ++ T E E MQL A+ + I+ +S L E
Sbjct: 181 SAADTDMNV-VMTEDGKMIEIQGTAEGEPFSHEELMQLLALANKGIADIVEAQKSALAE 238
>gi|28896951|ref|NP_796556.1| ribonuclease PH [Vibrio parahaemolyticus RIMD 2210633]
gi|260365861|ref|ZP_05778355.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus K5030]
gi|260877852|ref|ZP_05890207.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus AN-5034]
gi|260895499|ref|ZP_05903995.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus Peru-466]
gi|33301645|sp|Q87T93.1|RNPH_VIBPA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|28805159|dbj|BAC58440.1| ribonuclease PH [Vibrio parahaemolyticus RIMD 2210633]
gi|308088601|gb|EFO38296.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus Peru-466]
gi|308089812|gb|EFO39507.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus AN-5034]
gi|308113474|gb|EFO51014.1| tRNA nucleotidyltransferase [Vibrio parahaemolyticus K5030]
Length = 238
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 96/227 (42%), Gaps = 22/227 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RP+ R Q RP A GS EFGNTKV+ V PR K + +
Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGRGWVT 60
Query: 90 SNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L T G QG + ++ ++L + L+ + + V V++
Sbjct: 61 AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADAGIMMYD-----------LVASVSVSCLGKNLLIDPVLEEE 197
+ G IS ASVA+ADA + D VA+VSV LG +L D E+
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLLGDEVLCDLEYVED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLG 244
S D + + M ++ ++ T E P +E + L+ SAK+G
Sbjct: 181 SAADTDMNV-VMTEEGKMIEIQGTAE-GEPFSHEQLMALLE-SAKVG 224
>gi|71410043|ref|XP_807336.1| exosome-associated protein 4 [Trypanosoma cruzi strain CL Brener]
gi|70871314|gb|EAN85485.1| exosome-associated protein 4, putative [Trypanosoma cruzi]
Length = 229
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 70/161 (43%), Gaps = 10/161 (6%)
Query: 63 SAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDH------- 115
SA E GNT+VI +V P++ S GR+ C V + A GS
Sbjct: 29 SACVELGNTRVICAVHHPQQLVDEYRGSR-GRVACTVRRSASAGS-HSAGSAQPSVVTPE 86
Query: 116 KDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDL 175
KD S L E +ILE P+ V+V +L G V + S AL G M+DL
Sbjct: 87 KDMSLALEGVAEEVVILEKIPQLLVEVVVEILAEDGGVWDAVATSMSAALVSGGFEMHDL 146
Query: 176 VASVSVSCLGKN-LLIDPVLEEESYQDGSLMIACMPSRYEV 215
++ + L +++DP EES S ++ M + E+
Sbjct: 147 FSACGSALLSDGAVVLDPDAAEESNAQASALVCVMLNSGEI 187
>gi|425767491|gb|EKV06061.1| 3' exoribonuclease family protein [Penicillium digitatum Pd1]
gi|425769203|gb|EKV07703.1| 3' exoribonuclease family protein [Penicillium digitatum PHI26]
Length = 317
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 110/263 (41%), Gaps = 62/263 (23%)
Query: 20 PTRKTRPPIF-----SGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEF------ 68
P TRPP+F S + V R + R F +TG + +ASGS+Y EF
Sbjct: 10 PPGGTRPPVFASLQESSTGVANRAQRQRQPTELRKIFLKTGLIPTASGSSYLEFEPSASL 69
Query: 69 ----GNTKVIV----------SVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRG---Q 111
N K ++ +V GP+ ++ +S L +V Y FA R +
Sbjct: 70 AAARSNPKSLIPPSSALKLACTVHGPKPLPRSAAFSPNLVLTTHVKYAPFAARKRKGHIR 129
Query: 112 GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS----DLP-----------V 156
+ +D L AL GAII + +PK+ +D+ ++E+ D P V
Sbjct: 130 DASERDLGVHLETALRGAIIADRWPKSGLDITLTIIEAEDDRWWGDAPDSHDASWGMMNV 189
Query: 157 VISCASVALADAGIMMYDLVASVS--VSCLGKNLLIDP----------VLEEESYQDGSL 204
+ C + A A D + VS V+ L + DP +L+ + + S+
Sbjct: 190 LAGCITAASAAIADAHIDCLDLVSGGVAALVSD---DPDQSASSAPRLMLDIDPAEHRSI 246
Query: 205 MIAC----MPSRYEVTQLTVTGE 223
+ AC MP+R E+T+L + G+
Sbjct: 247 LSACVVAYMPARDEITELWLKGD 269
>gi|156389595|ref|XP_001635076.1| predicted protein [Nematostella vectensis]
gi|156222166|gb|EDO43013.1| predicted protein [Nematostella vectensis]
Length = 232
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 95/214 (44%), Gaps = 13/214 (6%)
Query: 38 RPDSRGFHQC--RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
+ ++R C R F G ++ A GS+ G+T+V+ + +GP E K + I R
Sbjct: 4 QDNTRPLQTCELRAMFCEHGLLDKADGSSKFAQGDTQVMAAAYGPVEVK--LNKELIDRA 61
Query: 96 NCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLP 155
V F + G K ++ + E ++ P+ ++ + V+++ GS L
Sbjct: 62 TLEV---IFRPKIGIPGCSEKLVEGIIRNSCEPIVLTALHPRASLTIVVQVVQNSGSLLS 118
Query: 156 VVISCASVALADAGIMMYDLVASVSVSCLGKN-LLIDPVLEEESYQDGSLMIACMPSRYE 214
++ A +A+ DAG M ++ ++ + ++ L++DP LE+E L
Sbjct: 119 CAVNAACLAMMDAGFPMRCMMCGITCAITEQDELVLDPTLEQERKATAVLTFVFDSVNQN 178
Query: 215 VTQLTVTGEWSTPHFNEAMQLCLDAS-AKLGKIM 247
+ + G + +N+ CL AS A +G I+
Sbjct: 179 LLTSSTKGSFDVDQYNK----CLAASKAAMGNIL 208
>gi|169778981|ref|XP_001823955.1| exosome complex endonuclease 1 [Aspergillus oryzae RIB40]
gi|238499561|ref|XP_002381015.1| exosome complex endonuclease 1, putative [Aspergillus flavus
NRRL3357]
gi|83772694|dbj|BAE62822.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220692768|gb|EED49114.1| exosome complex endonuclease 1, putative [Aspergillus flavus
NRRL3357]
gi|391869326|gb|EIT78525.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41 [Aspergillus
oryzae 3.042]
Length = 269
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 10/150 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK-----AMMYSN 91
LR D R +++ R + ++SGS+Y GNT ++ SV GP E ++ S+
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLAMGNTTIMCSVHGPAEGRRGDATGGAAGSS 73
Query: 92 IGRLNCNVSYTTFA---TPVRGQGSDHKD--FSSMLHKALEGAIILETFPKTTVDVFALV 146
+ +V+ FA R GSD + ++ L A + + +P +T+ + V
Sbjct: 74 GAVVEVDVNVAGFAGVDRKRRAGGSDKQSSRIATTLRAAFQSHLHTYLYPHSTISIHVSV 133
Query: 147 LESGGSDLPVVISCASVALADAGIMMYDLV 176
L + GS L I+ ++AL DAGI M L+
Sbjct: 134 LSADGSLLAAAINACTLALVDAGIPMPGLL 163
>gi|225429944|ref|XP_002281273.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Vitis
vinifera]
Length = 245
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 77/163 (47%), Gaps = 10/163 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R +Q RP +N A GSA G+TKV+ +V+GP+ K N +
Sbjct: 7 RDDGRTANQLRPLACSRNILNRAHGSASWSQGDTKVLAAVYGPKAGTKK--NENPEKACI 64
Query: 98 NVSYTTFATPVRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPV 156
V + P GQ G K++ +L + L+ +L P TT + V+ G+ LP
Sbjct: 65 EVVW----KPKTGQIGKPEKEYEVILKRTLKSICLLNINPNTTTSIIIQVVSDDGALLPC 120
Query: 157 VISCASVALADAGIMMYDLVASVSVSCLGKN--LLIDPVLEEE 197
I+ A AL DA I + L ++ CL ++ +++DP EE
Sbjct: 121 AINAACAALVDAAIPLKHLAVAI-CCCLTESGYVILDPTKVEE 162
>gi|296081851|emb|CBI20856.3| unnamed protein product [Vitis vinifera]
Length = 243
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 77/163 (47%), Gaps = 10/163 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R +Q RP +N A GSA G+TKV+ +V+GP+ K N +
Sbjct: 5 RDDGRTANQLRPLACSRNILNRAHGSASWSQGDTKVLAAVYGPKAGTKK--NENPEKACI 62
Query: 98 NVSYTTFATPVRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPV 156
V + P GQ G K++ +L + L+ +L P TT + V+ G+ LP
Sbjct: 63 EVVW----KPKTGQIGKPEKEYEVILKRTLKSICLLNINPNTTTSIIIQVVSDDGALLPC 118
Query: 157 VISCASVALADAGIMMYDLVASVSVSCLGKN--LLIDPVLEEE 197
I+ A AL DA I + L ++ CL ++ +++DP EE
Sbjct: 119 AINAACAALVDAAIPLKHLAVAI-CCCLTESGYVILDPTKVEE 160
>gi|307244059|ref|ZP_07526178.1| tRNA nucleotidyltransferase [Peptostreptococcus stomatis DSM 17678]
gi|306492583|gb|EFM64617.1| tRNA nucleotidyltransferase [Peptostreptococcus stomatis DSM 17678]
Length = 486
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 100/241 (41%), Gaps = 25/241 (10%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
RPD R + Q RP ++GS E GNTKVI + M + G ++
Sbjct: 37 RPDGRQYDQLRPVNITRNYTMHSAGSVLIEVGNTKVICTASVEDGVPGFMKGTGKGWISA 96
Query: 98 NVSYTTFATPVRGQGSDHK--------DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
S AT R + K + ++ +++ + LE + T+ + V+++
Sbjct: 97 EYSMLPSATETRKRRDSSKGRVDGRSQEIQRLIGRSIRSVVNLEDLGERTIWIDCDVIQA 156
Query: 150 GGSDLPVVISCASVALADAGIMMYD-----------LVASVSVSCLGKNLLIDPVLEEES 198
G I+ A VALADA +Y ++A+VSV + + +D +E+S
Sbjct: 157 DGGTRTASITGAFVALADALYKLYQAGDIKKMPLTSMLAAVSVGVVDSQVCLDICYQEDS 216
Query: 199 YQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAK----LGKIMRSCLKEA 254
+ I M ++ + ++ TGE P + M L+ + K L +I R L E
Sbjct: 217 NAEVDTNI-IMNNKGQFIEIQCTGE-ERPFTRDEMDKILEYAEKGNRDLMRIQRRVLGEV 274
Query: 255 A 255
A
Sbjct: 275 A 275
>gi|86146528|ref|ZP_01064850.1| ribonuclease PH [Vibrio sp. MED222]
gi|218708240|ref|YP_002415861.1| ribonuclease PH [Vibrio splendidus LGP32]
gi|254808602|sp|B7VHJ7.1|RNPH_VIBSL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|85835585|gb|EAQ53721.1| ribonuclease PH [Vibrio sp. MED222]
gi|218321259|emb|CAV17209.1| Ribonuclease PH [Vibrio splendidus LGP32]
Length = 238
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 92/232 (39%), Gaps = 20/232 (8%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RP+ R Q RP A GS EFGNTKV+ + + + G +
Sbjct: 1 MRPNDRAVDQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60
Query: 97 CNVSYTTFATPVRG--------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
AT R QG + ++ ++L + L+ + + V V++
Sbjct: 61 AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAVVDLKVMGEIMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA-------GIM----MYDLVASVSVSCLGKNLLIDPVLEEE 197
+ G IS ASVA+ADA G + M VA+VSV +G L D E+
Sbjct: 121 ADGGTRTASISGASVAMADAINSLLASGKLKKNPMKGHVAAVSVGIVGAQALCDLEYVED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRS 249
S D + + M ++ ++ T E E MQL A+ + I+ +
Sbjct: 181 SAADTDMNV-VMTEDGKMIEIQGTAEGEPFSHEELMQLLALANKGIADIVEA 231
>gi|221119375|ref|XP_002161086.1| PREDICTED: exosome complex component RRP46-like [Hydra
magnipapillata]
Length = 221
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 79/177 (44%), Gaps = 10/177 (5%)
Query: 62 GSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSSM 121
GS G TKVI +V+GP E K ++ + C + + V+ K +
Sbjct: 16 GSVTLSHGQTKVISAVYGPVEVKMNKEITDKATIICILKPKIGMSAVK-----EKVMEKI 70
Query: 122 LHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSV 181
+ K E AII P++ + V ++ GS L +I+ A ++L AG+ M +++ VSV
Sbjct: 71 VAKTCEQAIIASLHPRSAIQVVLQIVHDSGSLLSCLINAACLSLVHAGLPMRNMI--VSV 128
Query: 182 SCLGKN---LLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQL 235
C N L+DP + E L A ++ + +G ++ + + +QL
Sbjct: 129 CCAVTNNDEYLVDPTIAEIQDCKCVLTFAFESKNLDIVSIFTSGLFTVEQYFQCLQL 185
>gi|260779667|ref|ZP_05888557.1| ribonuclease PH [Vibrio coralliilyticus ATCC BAA-450]
gi|260604476|gb|EEX30780.1| ribonuclease PH [Vibrio coralliilyticus ATCC BAA-450]
Length = 238
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 97/230 (42%), Gaps = 20/230 (8%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RP+ R Q RP A GS EFGNTKV+ V PR K K +
Sbjct: 1 MRPNDRQADQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60
Query: 90 SNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L + G QG + ++ ++L + LE + V V V++
Sbjct: 61 AEYGMLPRSTHSRMRREAASGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA-------GIM----MYDLVASVSVSCLGKNLLIDPVLEEE 197
+ G IS ASVA+ADA G + M VA+VSV LG+++L D E+
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLIENGKLKKNPMKGHVAAVSVGILGEDVLCDLEYVED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIM 247
S D + + M + ++ T E E M+L A+ + +I+
Sbjct: 181 SAADTDMNV-VMTEDGRMIEVQGTAEGEPFTHAELMKLLESATKGITEIV 229
>gi|300780583|ref|ZP_07090438.1| tRNA nucleotidyltransferase [Corynebacterium genitalium ATCC 33030]
gi|300533569|gb|EFK54629.1| tRNA nucleotidyltransferase [Corynebacterium genitalium ATCC 33030]
Length = 245
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 96/227 (42%), Gaps = 23/227 (10%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
+LR D R + RP G ++ +GS EFGNT+V+ + + S G L
Sbjct: 7 FLRADGRALDEMRPVRITRGFTSNPAGSVLVEFGNTRVMCTASAEEGVPRFKKDSGEGWL 66
Query: 96 NCNVSYTTFATPVRG---------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALV 146
+ AT R +G H + S ++ ++L A+ L + T+ + V
Sbjct: 67 TAEYAMLPAATHDRMPRESMKGKVKGRTH-EISRLVGRSLRAAVDLTALGENTIQLDCDV 125
Query: 147 LESGGSDLPVVISCASVALADA-----------GIMMYDLVASVSVSCLGKNLLIDPVLE 195
L++ G I+ A VALADA G + VA+VSV + + +D E
Sbjct: 126 LQADGGTRTASITGAYVALADAIGYLKEQGVVPGEPLLAPVAAVSVGIVDGRVCLDLPYE 185
Query: 196 EESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAK 242
E+S + L + M + ++ TGE E + L LDA+ K
Sbjct: 186 EDSRAEVDLNV-VMTDSGDFVEVQGTGEHGL-FGREQLGLMLDAAEK 230
>gi|255722417|ref|XP_002546143.1| hypothetical protein CTRG_00925 [Candida tropicalis MYA-3404]
gi|240136632|gb|EER36185.1| hypothetical protein CTRG_00925 [Candida tropicalis MYA-3404]
Length = 288
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 35/176 (19%)
Query: 51 FFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATP--- 107
F + + +A+GSAY E NT + VS+FGPR + + + + C P
Sbjct: 39 FLKHSVITNANGSAYLEINNTIIEVSIFGPRPIRGSFIDRATLSIECKFLPHISPQPQSN 98
Query: 108 VRGQGS----------DHKDFSSMLHKALEGAIILETFPKTTVDVFALVL---------- 147
+ GS +HK S+ L ++LE +PK+T+D+ ++
Sbjct: 99 IFNDGSKNIRTGMTNVEHK-LSNYLESCFLPCLVLEKYPKSTIDIQVSIISVDKEMLNDD 157
Query: 148 ----ESGGSDL----PVVISCASVALADAGIMMYDLVAS--VSVSCLGKNLLIDPV 193
+ S L ++ C S+AL D+GI M D+V+S V + GK +LI+P+
Sbjct: 158 DGRTNNDNSSLLWLCQWMVCCCSLALVDSGIEMRDIVSSGQVRYTKSGK-VLINPI 212
>gi|119600486|gb|EAW80080.1| hCG1654866, isoform CRA_a [Homo sapiens]
Length = 432
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 57/102 (55%), Gaps = 3/102 (2%)
Query: 112 GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIM 171
G + + + +L +ALE A+ L+ +P ++ L+LE GGS L ++ A +ALA AG+
Sbjct: 58 GGEEPEPAMVLQEALEPAMCLDRYPHVQLEASELLLEDGGSALATELNTAKLALAYAGME 117
Query: 172 MYDLVASVSVSCLGKNL---LIDPVLEEESYQDGSLMIACMP 210
M DLV S + ++ L+DP+ EE + + +A +P
Sbjct: 118 MNDLVVSCGLGLAPGSVPTWLLDPMRLEEEHTAPGVTLALLP 159
>gi|375264199|ref|YP_005021642.1| ribonuclease PH [Vibrio sp. EJY3]
gi|369839523|gb|AEX20667.1| ribonuclease PH [Vibrio sp. EJY3]
Length = 238
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 97/227 (42%), Gaps = 22/227 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RP+ R Q RP A GS EFGNTKV+ V PR K K +
Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 60
Query: 90 SNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L T G QG + ++ ++L + L+ + + V V++
Sbjct: 61 AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA-------GIM----MYDLVASVSVSCLGKNLLIDPVLEEE 197
+ G IS ASVA+ADA G + M VA+VSV LG +L D E+
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLIESGKLKANPMKGHVAAVSVGLLGDEVLCDLEYVED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLG 244
S D + + M ++ ++ T E P +E + L+ SAK+G
Sbjct: 181 SAADTDMNV-VMTEEGKMIEIQGTAE-GEPFSHEQLMALLE-SAKVG 224
>gi|383809882|ref|ZP_09965395.1| tRNA adenylyltransferase [Rothia aeria F0474]
gi|383447417|gb|EID50401.1| tRNA adenylyltransferase [Rothia aeria F0474]
Length = 245
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 101/240 (42%), Gaps = 23/240 (9%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R ++ RP G +A GSA EFGNT+V+ + + + G ++
Sbjct: 6 REDGRACNELRPITITRGWSLNAEGSALIEFGNTRVLCTASFTEGVPRWLKGEGKGWVSA 65
Query: 98 NVSYTTFATPVRGQ--------GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ AT R G + S ++ ++L I ++ + T+ + VL++
Sbjct: 66 EYAMLPRATGTRSSRESVKGKIGGRTHEISRLIGRSLRAVIDMDALGENTIVLDCDVLQA 125
Query: 150 GGSDLPVVISCASVALADA-------GIM------MYDLVASVSVSCLGKNLLID-PVLE 195
G I+ A VALADA G++ + D V+++SV + ++D P E
Sbjct: 126 DGGTRTASITGAYVALADAIGWAKKNGLIASGANPLTDSVSAISVGIIDGTPMLDLPYTE 185
Query: 196 EESYQDGSLMIACMPSRYEVTQLTVTGE-WSTPHFNEAMQLCLDASAKLGKIMRSCLKEA 254
+ + ++ ++ Q T G + N + L L+ +A+L +I R L A
Sbjct: 186 DVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRDELNALLDLALEGTAELAQIQREVLGTA 245
>gi|25152573|ref|NP_497279.2| Protein EXOS-4.2 [Caenorhabditis elegans]
gi|351064253|emb|CCD72537.1| Protein EXOS-4.2 [Caenorhabditis elegans]
Length = 241
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 82/200 (41%), Gaps = 24/200 (12%)
Query: 33 DVDWLRPDS----RGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPR-----ES 83
D D + DS R RP + G + GS YAEFGNT+V+ + GP E
Sbjct: 19 DDDRMETDSEEHKRANTAFRPLCVKCGVFGAQDGSGYAEFGNTRVLAQITGPDGDGKWEE 78
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVF 143
+A + + + +V ++ + L A+ I +P +++
Sbjct: 79 DRAKITIELKGIEDSVKVA--------------EYRAQLASAVSAVIFASKYPGKVIEIE 124
Query: 144 ALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGK-NLLIDPVLEEESYQDG 202
VL G L +S ++A++ +GI L+ASV V+ L DP E G
Sbjct: 125 ITVLSDDGGVLSTALSAVTLAISHSGIENMGLMASVHVAMNSDGECLTDPSTSESEGAIG 184
Query: 203 SLMIACMPSRYEVTQLTVTG 222
+ A +P+ + T + + G
Sbjct: 185 GVTFAFVPNLGQTTCVDIYG 204
>gi|115442662|ref|XP_001218138.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114188007|gb|EAU29707.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 268
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 10/150 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK-------AMMY 89
LR D R +++ R + ++SGS+Y GNT ++ SV GP E ++ A
Sbjct: 14 LRLDGRRWNELRLFQAQISTNPASSGSSYLAMGNTTIMCSVHGPAEGRRGDATGGSAGSS 73
Query: 90 SNIGRLNCNVS-YTTFATPVRGQGSDHKD--FSSMLHKALEGAIILETFPKTTVDVFALV 146
+ ++ NV+ + R GSD + ++ L A + + +P +T+ + V
Sbjct: 74 GAVVEVDVNVAGFAGVDRKRRAGGSDRQSSRVATTLRAAFQSHLHTYLYPHSTISIHVSV 133
Query: 147 LESGGSDLPVVISCASVALADAGIMMYDLV 176
L S GS L ++ ++AL DAGI M L+
Sbjct: 134 LSSDGSLLAAAVNACTLALVDAGIPMPGLL 163
>gi|301095816|ref|XP_002897007.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262108436|gb|EEY66488.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 171
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 75/160 (46%), Gaps = 14/160 (8%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R ++ RP GA+ A GSA G++ V+ +V+GP +++ N +
Sbjct: 8 RQDGRAGNELRPFASEQGALFRADGSARMSHGSSTVLAAVYGPGQARN-WRAENTDKATL 66
Query: 98 NVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS-DLP 155
+V + +G S K++ ++ + ++ ++FP+ + + V+E GS P
Sbjct: 67 DVCFKL----EKGIMTSKEKEYEQIIRQTFAPVVLTDSFPRAVISIVVQVIEDNGSISFP 122
Query: 156 -------VVISCASVALADAGIMMYDLVASVSVSCLGKNL 188
+ I+ S+AL DAG+ M +V + S LG L
Sbjct: 123 LFLIIAALAINAVSLALMDAGVPMLSVVTATSRLFLGSPL 162
>gi|342319558|gb|EGU11506.1| Hypothetical Protein RTG_02676 [Rhodotorula glutinis ATCC 204091]
Length = 346
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 70/158 (44%), Gaps = 34/158 (21%)
Query: 60 ASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIG----------------------RLNC 97
A G A A G T V SVFGPRE ++ +S+ G +N
Sbjct: 52 ADGYALASHGLTTVSSSVFGPREPQRTGPWSSTGTGQSAGGGVGQAAGGQQKGDRGSVNV 111
Query: 98 NVSYTTFATPV----------RGQGSDHK--DFSSMLHKALEGAIILETFPKTTVDVFAL 145
V + V R G D + + ++ + E ++L +P++++D++
Sbjct: 112 EVGVAGWGERVGQGGSSEGGLRRGGKDRRTIELAAAVKNTFEPVLLLHLYPRSSIDIYLQ 171
Query: 146 VLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSC 183
+LE+ GS L I+ S+AL AG+ + D V S+S++
Sbjct: 172 ILENDGSVLQAAINATSLALISAGLPLSDYVCSLSLAS 209
>gi|330791335|ref|XP_003283749.1| hypothetical protein DICPUDRAFT_85962 [Dictyostelium purpureum]
gi|325086372|gb|EGC39763.1| hypothetical protein DICPUDRAFT_85962 [Dictyostelium purpureum]
Length = 233
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 78/175 (44%), Gaps = 19/175 (10%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
++ R + R Q R +N A GSA T V+ +V+GP E A I +
Sbjct: 6 EFRRLNGRTQGQLRSMESEQSLLNKADGSAKFSQNKTSVLAAVYGPIEVNSAR-KEKILK 64
Query: 95 LNCNVSYTTFATPVRGQGSD-HKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSD 153
V++T P G + K+ ++ A+E I+ P+T V V V GS
Sbjct: 65 SYVEVTFT----PALGNTTYLDKEKELLVKNAVESVILTTLHPRTQVSVIIQVYSDDGSI 120
Query: 154 LPVVISCASVALADAGIMMYDLVASVSV----------SCLGKNLLIDPVLEEES 198
+ I+ A +AL DAGI M L+ S+++ CL +++DP L EE+
Sbjct: 121 VSCSINAACLALLDAGIEMNGLIGSITLMNEDDDEDNNKCL---MIVDPDLNEEN 172
>gi|357419267|ref|YP_004932259.1| RNAse PH [Thermovirga lienii DSM 17291]
gi|355396733|gb|AER66162.1| RNAse PH [Thermovirga lienii DSM 17291]
Length = 257
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 97/238 (40%), Gaps = 25/238 (10%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D RGF RP + A GS FG+TKVI + + + + + G +
Sbjct: 4 RIDGRGFKDLRPITIERQYIKYAEGSVRISFGDTKVICTASVEDKVPQFLRGTGQGWVTA 63
Query: 98 NVSYTTFATPVRGQGSDHK--------DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
S AT R K + ++ ++L + L + T+ + V+++
Sbjct: 64 EYSMLPRATATRSPRDISKGRLNGRSSEIQRLIGRSLRAGVDLTQLGERTIWIDCDVIQA 123
Query: 150 GGSDLPVVISCASVALADA-----------GIMMYDLVASVSVSCLGKNLLIDPVLEEES 198
G I+ VAL DA G+ + VA+VSV + N++ D EE+S
Sbjct: 124 DGGTRTAAITGGFVALVDALRTLHKNALLQGLPITSFVAAVSVGKVDGNIMTDLCYEEDS 183
Query: 199 YQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASA----KLGKIMRSCLK 252
+ + M + + ++ TGE T E + L LDA+ +L I R CL+
Sbjct: 184 RAEVDCNV-IMNDKGKFIEIQGTGEAGTFSRQE-LNLLLDAAEEAIRRLFAIQRECLE 239
>gi|237756090|ref|ZP_04584666.1| ribonuclease PH [Sulfurihydrogenibium yellowstonense SS-5]
gi|237691740|gb|EEP60772.1| ribonuclease PH [Sulfurihydrogenibium yellowstonense SS-5]
Length = 257
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 102/241 (42%), Gaps = 29/241 (12%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RPD R Q RP A GS EFGNTKVIV+ E K G+
Sbjct: 1 MRPDGRKPAQLRPIKITRDFNIYAEGSVLIEFGNTKVIVT--ASVEDKVPPFLKGTGQGW 58
Query: 97 CNVSYT---------TFATPVRG--QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFAL 145
Y+ + VRG G H + ++ ++L A+ L+ + T+ +
Sbjct: 59 ITAEYSMIPRASETRSLREVVRGSPSGRTH-EIQRLIGRSLRAAVDLKKLGEKTIWIDCD 117
Query: 146 VLESGGSDLPVVISCASVALADAGIM-----------MYDLVASVSVSCLGKNLLIDPVL 194
V+++ G I+ A +A+ADA I + D VA++S+ + +++D
Sbjct: 118 VIQADGGTRVASITGAFIAVADACIKLTKQNLVKANPLKDYVAAISIGKVRNEIVLDLNY 177
Query: 195 EEESYQDGSLMIACMPSRYEVTQLTVTGE---WSTPHFNEAMQLCLDASAKLGKIMRSCL 251
E+S + + M + E ++ TGE +S FN+ ++ +L KI + +
Sbjct: 178 AEDSNAQVDMNL-VMTGKGEFVEIGATGEENTFSQEDFNKMLEYGKSGIERLIKIQKEFI 236
Query: 252 K 252
+
Sbjct: 237 E 237
>gi|284989916|ref|YP_003408470.1| ribonuclease PH [Geodermatophilus obscurus DSM 43160]
gi|284063161|gb|ADB74099.1| ribonuclease PH [Geodermatophilus obscurus DSM 43160]
Length = 250
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 60/139 (43%), Gaps = 8/139 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
RPD R Q RP G ++ A GS EFG T+V+ + + S +G +
Sbjct: 9 RPDGRAADQLRPVTITRGWLDHAEGSVLVEFGRTRVLCAASVTEGVPRWRKGSGLGWVTA 68
Query: 98 NVSYTTFATPVRGQ--------GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ AT RG G + S ++ ++L AI L + +V + VL++
Sbjct: 69 EYAMLPRATHTRGDRESVKGRIGGRTHEISRLIGRSLRAAIDLGALGENSVAIDCDVLQA 128
Query: 150 GGSDLPVVISCASVALADA 168
G I+ A VALADA
Sbjct: 129 DGGTRTAAITGAYVALADA 147
>gi|328784959|ref|XP_624485.2| PREDICTED: exosome complex exonuclease RRP46 [Apis mellifera]
Length = 229
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 94/215 (43%), Gaps = 15/215 (6%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLNCNVSYTTFAT 106
RP ++ GSA GNT + ++GP E+K + M+Y + + VSY
Sbjct: 22 RPMNCELNQLSMPDGSAMLMQGNTAAVAGIYGPIEAKLQKMIYD---KASIEVSYI---- 74
Query: 107 PVRGQGSDHKDFSSM-LHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVAL 165
PV+G + M + + E AII+ P T + + +E G L I+ A +AL
Sbjct: 75 PVKGPAKIDDRMTEMYIKETCEAAIIVTFHPATAICINIQEMEDSGGMLACTINAACLAL 134
Query: 166 ADAGIMMYDLVASVSVSCL----GKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVT 221
+AGI M +A +V+C+ N+++DP + A + ++
Sbjct: 135 INAGIPMKFTIA--AVNCMIQEGTNNIILDPDSTQLQDAKAEFTYAFDSVKKDIICCYTA 192
Query: 222 GEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAAS 256
G ++ F E + C AS + R+ +K+ A+
Sbjct: 193 GCFTEEEFLETIDKCKQASQYVFDFYRNLVKKYAN 227
>gi|188996466|ref|YP_001930717.1| ribonuclease PH [Sulfurihydrogenibium sp. YO3AOP1]
gi|226736945|sp|B2V890.1|RNPH_SULSY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|188931533|gb|ACD66163.1| ribonuclease PH [Sulfurihydrogenibium sp. YO3AOP1]
Length = 257
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 102/241 (42%), Gaps = 29/241 (12%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RPD R Q RP A GS EFGNTKVIV+ E K G+
Sbjct: 1 MRPDGRKPAQLRPIKIIRDFNIYAEGSVLIEFGNTKVIVT--ASVEDKVPPFLKGTGQGW 58
Query: 97 CNVSYT---------TFATPVRG--QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFAL 145
Y+ + VRG G H + ++ ++L A+ L+ + T+ +
Sbjct: 59 ITAEYSMIPRASETRSLREVVRGSPSGRTH-EIQRLIGRSLRAAVDLKKLGEKTIWIDCD 117
Query: 146 VLESGGSDLPVVISCASVALADAGIM-----------MYDLVASVSVSCLGKNLLIDPVL 194
V+++ G I+ A +A+ADA I + D VA++SV + +++D
Sbjct: 118 VIQADGGTRVASITGAFIAVADACIKLTKQNLVKANPLKDYVAAISVGKVRNEIVLDLNY 177
Query: 195 EEESYQDGSLMIACMPSRYEVTQLTVTGE---WSTPHFNEAMQLCLDASAKLGKIMRSCL 251
E+S + + M + E ++ TGE +S FN+ ++ +L KI + +
Sbjct: 178 TEDSNAQVDMNL-VMTGKGEFVEIGATGEENTFSQEDFNKMLEYGKSGIERLIKIQKEFI 236
Query: 252 K 252
+
Sbjct: 237 E 237
>gi|17531759|ref|NP_496284.1| Protein CRN-5 [Caenorhabditis elegans]
gi|3874232|emb|CAA90109.1| Protein CRN-5 [Caenorhabditis elegans]
gi|31747259|gb|AAP57301.1| cell death-related nuclease 5 [Caenorhabditis elegans]
Length = 214
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 92/224 (41%), Gaps = 28/224 (12%)
Query: 46 QCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGP------RESKKAMMYSNIGRLNCNV 99
+C +F + +A GSA G T + S GP + S +AM R NC
Sbjct: 9 RCELSFLK-----NADGSACFSQGATCIWASCSGPGDVHASKASDEAMTLDISYRANCG- 62
Query: 100 SYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVIS 159
+ ++++H L AI LE FP TT+ V ++ GS V I+
Sbjct: 63 ------------DNKFNVLNNIIHSTLSNAINLELFPHTTISVTVHGIQDDGSMGAVAIN 110
Query: 160 CASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIA-CMPS--RYEVT 216
A AL D G+ + V + + L+IDP ++E+ G ++ + C S EV
Sbjct: 111 GACFALLDNGMPFETVFCGVLIVRVKDELIIDPTAKQEAASTGRVLFSVCKGSDGHPEVC 170
Query: 217 QLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAAS-DEQ 259
+ G W A L +++ + ++ +K S DEQ
Sbjct: 171 AMDAIGHWDFIQLEAAWSLAQPSASAIFDFYKTVMKRKLSVDEQ 214
>gi|255713226|ref|XP_002552895.1| KLTH0D03960p [Lachancea thermotolerans]
gi|238934275|emb|CAR22457.1| KLTH0D03960p [Lachancea thermotolerans CBS 6340]
Length = 243
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 79/156 (50%), Gaps = 20/156 (12%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGN-------TKVIVSVFGPRESKKAMMYS 90
+P ++ + + G V++A+GS+Y E T ++ SV+GPR S+ A +S
Sbjct: 31 QPPQEKNNENESMYIKNGLVSNANGSSYLELKRGESSEQCTILLSSVYGPRPSRGA--FS 88
Query: 91 NIGRLNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE-- 148
+ L+ T G+ K+ + L I LE +PK+ +D+F +++
Sbjct: 89 SKASLSVQFKEVTIEKIPSGE---LKEICNFLSNIFSAVINLERYPKSGIDIFLSLIKNP 145
Query: 149 --SGGSDL-PVVISCA---SVALADAGIMMYDLVAS 178
S ++L P++ +C ++ALADAGI ++D V++
Sbjct: 146 ITSDEANLEPIIAACVNGITLALADAGIEIFDTVSA 181
>gi|162329623|ref|YP_001218468.2| ribonuclease PH [Vibrio cholerae O395]
gi|262167372|ref|ZP_06035080.1| ribonuclease PH [Vibrio cholerae RC27]
gi|262024174|gb|EEY42867.1| ribonuclease PH [Vibrio cholerae RC27]
Length = 238
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 98/227 (43%), Gaps = 22/227 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RPD+R Q R A GS EFGNTKV+ + PR K K +
Sbjct: 1 MRPDNRAADQVRSIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60
Query: 90 SNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L T G QG + ++ ++L + LE + + V V++
Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA-------GIM----MYDLVASVSVSCLGKNLLIDPVLEEE 197
+ G I+ ASVALADA G + M VA+VSV LG+++L D E+
Sbjct: 121 ADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEYVED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLG 244
S D + + M ++ ++ T E P +E + L L A AK G
Sbjct: 181 SAADTDMNV-VMTEEGKMIEIQGTAE-GEPFSHEQL-LELLAVAKKG 224
>gi|308473330|ref|XP_003098890.1| hypothetical protein CRE_31358 [Caenorhabditis remanei]
gi|308268029|gb|EFP11982.1| hypothetical protein CRE_31358 [Caenorhabditis remanei]
Length = 214
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 94/220 (42%), Gaps = 19/220 (8%)
Query: 46 QCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFA 105
+C +F + +A GSA G+T + S GP + + +N + ++SY
Sbjct: 9 RCELSFLK-----NADGSACFSQGSTCIWASCSGPGDGHASK--ANEEAMTLDISY---- 57
Query: 106 TPVRGQGSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASV 163
R D+K ++++ + AI LE FP TT+ V ++ GS V I+ A
Sbjct: 58 ---RANCGDNKFSVLNNIIQSTISKAINLELFPHTTIAVTIHGIQDDGSIGAVAINGACF 114
Query: 164 ALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC---MPSRYEVTQLTV 220
AL D G+ + V V L L+IDP ++E+ G ++ A EV +
Sbjct: 115 ALLDNGMPFEAVFCGVLVVRLKDELIIDPTTKQEASSTGRVLFAVCNGADGHPEVCSMDA 174
Query: 221 TGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDEQE 260
G+W A L ++ + + RS ++ S ++
Sbjct: 175 IGQWDFNQLEAAWSLAQPSATAIFEFYRSVMQRKHSIDEH 214
>gi|284794093|pdb|3KRN|A Chain A, Crystal Structure Of C. Elegans Cell-Death-Related
Nuclease 5(Crn-5)
gi|284794094|pdb|3KRN|B Chain B, Crystal Structure Of C. Elegans Cell-Death-Related
Nuclease 5(Crn-5)
Length = 222
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 92/224 (41%), Gaps = 28/224 (12%)
Query: 46 QCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGP------RESKKAMMYSNIGRLNCNV 99
+C +F + +A GSA G T + S GP + S +AM R NC
Sbjct: 9 RCELSFLK-----NADGSACFSQGATCIWASCSGPGDVHASKASDEAMTLDISYRANCG- 62
Query: 100 SYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVIS 159
+ ++++H L AI LE FP TT+ V ++ GS V I+
Sbjct: 63 ------------DNKFNVLNNIIHSTLSNAINLELFPHTTISVTVHGIQDDGSMGAVAIN 110
Query: 160 CASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIA-CMPS--RYEVT 216
A AL D G+ + V + + L+IDP ++E+ G ++ + C S EV
Sbjct: 111 GACFALLDNGMPFETVFCGVLIVRVKDELIIDPTAKQEAASTGRVLFSVCKGSDGHPEVC 170
Query: 217 QLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAAS-DEQ 259
+ G W A L +++ + ++ +K S DEQ
Sbjct: 171 AMDAIGHWDFIQLEAAWSLAQPSASAIFDFYKTVMKRKLSVDEQ 214
>gi|84386442|ref|ZP_00989470.1| ribonuclease PH [Vibrio splendidus 12B01]
gi|84378866|gb|EAP95721.1| ribonuclease PH [Vibrio splendidus 12B01]
Length = 238
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 86/218 (39%), Gaps = 20/218 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RP+ R Q RP A GS EFGNTKV+ + + + G +
Sbjct: 1 MRPNDRAVDQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60
Query: 97 CNVSYTTFATPVRG--------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
AT R QG + ++ ++L + L+ + + V V++
Sbjct: 61 AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAVVDLKVMGEIMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA-------GIM----MYDLVASVSVSCLGKNLLIDPVLEEE 197
+ G IS ASVA+ADA G + M VA+VSV +G L D E+
Sbjct: 121 ADGGTRTASISGASVAMADAINSLLASGKLKKNPMKGHVAAVSVGIVGAQALCDLEYVED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQL 235
S D + + M ++ ++ T E E MQL
Sbjct: 181 SAADTDMNV-VMTEDGKMIEIQGTAEGEPFSHEELMQL 217
>gi|380796339|gb|AFE70045.1| exosome complex component MTR3, partial [Macaca mulatta]
Length = 161
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 75/144 (52%), Gaps = 4/144 (2%)
Query: 112 GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIM 171
G + ++ + L +ALE A+ L +P+ ++V AL+LE GGS L ++ A++ALADAG+
Sbjct: 5 GGEERELALALQEALEPAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVE 64
Query: 172 MYDLVASVSVSCL---GKNLLIDPVLEEESYQDGSLMIACMPSRYEVT-QLTVTGEWSTP 227
MYDLV +S L+DP EE L +A MP +V L
Sbjct: 65 MYDLVVGCGLSLAPGPAPTWLLDPTRLEEERAAAGLTVALMPVLNQVAGLLGSGEGGLIE 124
Query: 228 HFNEAMQLCLDASAKLGKIMRSCL 251
+ EA++L L+ +L +++ L
Sbjct: 125 SWAEAVRLGLEGCQRLYPVLQQSL 148
>gi|268570481|ref|XP_002640755.1| C. briggsae CBR-ARX-4 protein [Caenorhabditis briggsae]
Length = 539
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 83/199 (41%), Gaps = 19/199 (9%)
Query: 32 SDVDWLRPDSRGFHQ-----CRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKA 86
S VD R D+ Q RP + G + GS YAEFGNT+V+ + GP
Sbjct: 16 SRVDDDRMDTEEVEQRSSTAFRPLSVKCGVFGAQDGSGYAEFGNTRVLAQILGPD----- 70
Query: 87 MMYSNIGRLNCNVSYTTFATPVRGQGSDHK--DFSSMLHKALEGAIILETFPKTTVDVFA 144
G + ++G ++ ++ + L + I + +P +++
Sbjct: 71 ------GDGKWEEDHAKVVVTLKGVENETSVAEWRAELTSSASAVIFVNKYPGKVIEIEI 124
Query: 145 LVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCL-GKNLLIDPVLEEESYQDGS 203
VL G L I+ ++ALA +GI L ASV V+ + + DP E S G
Sbjct: 125 TVLSDDGGVLSTAITAMALALAHSGIEHMGLTASVHVAMRPNGDYITDPSTSESSGILGG 184
Query: 204 LMIACMPSRYEVTQLTVTG 222
+ A +P+ + T + + G
Sbjct: 185 VTFAFVPNLDQTTCVDLYG 203
>gi|348677627|gb|EGZ17444.1| hypothetical protein PHYSODRAFT_499334 [Phytophthora sojae]
Length = 170
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 75/161 (46%), Gaps = 13/161 (8%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R ++ RP GA+ A GSA G++ V+ SV+GP +++ +
Sbjct: 8 RQDGRAGNELRPFASEQGALFRADGSARMSHGSSTVLASVYGPGQARN-WRAEKTDKATL 66
Query: 98 NVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS-DLP 155
+V + +G S +++ ++ + ++ ++FP+ + + V+E GS P
Sbjct: 67 DVCFKL----EKGITTSKEREYEQIIRETFTPVVLTDSFPRAVISIVVQVIEDNGSISFP 122
Query: 156 V------VISCASVALADAGIMMYDLVASVSVSCLGKNLLI 190
+ I+ S+AL DAG+ M +V + S LG L +
Sbjct: 123 LFSYYAFAINAVSLALMDAGVPMLSVVTATSKRFLGSPLRV 163
>gi|257062723|gb|ACV40374.1| ribosomal RNA-processing protein 46 [Hordeum vulgare subsp.
vulgare]
Length = 240
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 85/216 (39%), Gaps = 26/216 (12%)
Query: 57 VNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQ-GSDH 115
+ A GSA G+T V+ +V+GPR + G S P GQ G
Sbjct: 26 LERAHGSARWAQGDTVVLAAVYGPRPGTRK------GENPEKASLEVVWKPKTGQIGRQE 79
Query: 116 KDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDL 175
K++ L + L+ +L P TT + V+ GS LP I+ + AL AGI M L
Sbjct: 80 KEYEMTLKRTLQSICLLTVHPNTTTSIILQVMGDDGSLLPCAINASCAALVFAGIPMKHL 139
Query: 176 VASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS------------------RYEVTQ 217
++ L +I + E Q S P+ R +T
Sbjct: 140 AVAIGCGVLPDGSVILDTSKAEEQQLKSFAHLVFPNSSLSVDVKEPQQKDGQSERGLITS 199
Query: 218 LTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
+T G S + ++ L ASA++ MR+ L++
Sbjct: 200 IT-HGVMSEDDYFNCIERGLAASARISDFMRTTLQK 234
>gi|345489938|ref|XP_003426267.1| PREDICTED: exosome complex component RRP46-like [Nasonia
vitripennis]
Length = 216
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 90/213 (42%), Gaps = 11/213 (5%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATP 107
RP ++ GS G+T V+ V+GP E+K M+ N + TF P
Sbjct: 9 RPLNCELNYLSVPDGSTMFMQGDTSVLAGVYGPVEAKLQKMFHNKATVE-----ATFG-P 62
Query: 108 VRGQGSDHKDFSSM-LHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALA 166
++G S F + + EGAI+ P TV + L+ G L I+ A +AL
Sbjct: 63 IKGPPSIDDRFVELYVRDTCEGAILTSLHPAATVSINIQELQDCGGLLACSINAACLALI 122
Query: 167 DAGIMMYDLVASVSVSCLGKN---LLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGE 223
++ I M A+V + KN ++IDP L + + E+ +G+
Sbjct: 123 NSSIAMKFTFAAVCCM-IDKNSGDIVIDPSLIQTQNAKATFTCVFDSVNKELICCQTSGQ 181
Query: 224 WSTPHFNEAMQLCLDASAKLGKIMRSCLKEAAS 256
++ E++ C +AS + R +K+ A+
Sbjct: 182 FTEEDLTESINKCKEASKYIFDFYRDIVKKYAT 214
>gi|109900580|ref|YP_663835.1| ribonuclease PH [Pseudoalteromonas atlantica T6c]
gi|410629314|ref|ZP_11340018.1| ribonuclease PH [Glaciecola mesophila KMM 241]
gi|123063997|sp|Q15MV7.1|RNPH_PSEA6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|109702861|gb|ABG42781.1| RNAse PH [Pseudoalteromonas atlantica T6c]
gi|410151110|dbj|GAC26787.1| ribonuclease PH [Glaciecola mesophila KMM 241]
Length = 237
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 91/220 (41%), Gaps = 21/220 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RP+ R Q RP A GS EFGNTKV+ + + M G +N
Sbjct: 1 MRPNDRTASQIRPVTITRNFTCHAEGSVLIEFGNTKVLCNASVTEGVPRFMKGQGKGWVN 60
Query: 97 CNVSYTTFATPVRG--------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
S AT R QG + ++ ++L A+ L+ + T+ V V++
Sbjct: 61 AEYSMLPRATHTRSDREAARGKQGGRTLEIQRLIARSLRAALDLKLLGENTIVVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA-------GIM----MYDLVASVSVSCLGKNLLIDPVLEEE 197
+ G I+ A VAL DA GI+ M ++A++SV N + D E+
Sbjct: 121 ADGGTRTASITGACVALVDALTWMRSKGIIKTNPMKHMIAAISVGIYKGNAIADLEYTED 180
Query: 198 SYQDGSLMIACMPSRYEV-TQLTVTGE-WSTPHFNEAMQL 235
S + + + + + Q T GE +S +E ++L
Sbjct: 181 SEAETDMNVVMTDTGKMIEVQGTAEGEPFSIEEMHEMLEL 220
>gi|325182492|emb|CCA16947.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 251
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 85/193 (44%), Gaps = 40/193 (20%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R ++ R G ++ A GS+ FG+T V+V+V+GP ++K A N
Sbjct: 5 LRDDGRNCNELRQISSEQGTLHRADGSSNLTFGDTTVLVAVYGPGQAKIAR--------N 56
Query: 97 CNVSYTTFATPVR-GQG---SDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
V VR QG + K+ ++ + E I + FP+T + + ++E GS
Sbjct: 57 ELVDKAAIDVCVRLNQGIAAAKEKEMELIVRRLYEPIIQRQEFPRTVISIVIQIIEDAGS 116
Query: 153 D-------------------------LPVVISCASVALADAGIMMYDLVASVSVSCLGKN 187
+ VI+ ++AL DA I M +V S + CL ++
Sbjct: 117 ISSLLTSHTIGFGSCVEFLDRLCLYLVSAVINAVTMALMDAEIAMLGVVTS-TTCCLTED 175
Query: 188 --LLIDPVLEEES 198
+L+DP +EE+
Sbjct: 176 GSVLLDPSQKEEA 188
>gi|146297069|ref|YP_001180840.1| polynucleotide phosphorylase/polyadenylase [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|187470950|sp|A4XL64.1|PNP_CALS8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|145410645|gb|ABP67649.1| Polyribonucleotide nucleotidyltransferase [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 701
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 75/164 (45%), Gaps = 20/164 (12%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI-VSVFGPR------------ESK 84
RPD R F + RP + G + GSA + G T+V+ V+ G + E+K
Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372
Query: 85 KAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILE-TFPKTTVDVF 143
+ M + N + S PVRG G ++ +ALE I E FP T+ +
Sbjct: 373 RYMHHYNFPPYSTGES-----KPVRGPGRREIGHGALAERALEPVIPSEDEFP-YTIRLV 426
Query: 144 ALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKN 187
+ VL S GS + +++AL DAG+ + VA +S+ + K
Sbjct: 427 SEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKE 470
>gi|51105818|gb|EAL24418.1| similar to Mtr3 (mRNA transport regulator 3)-homolog; Mtr3 (mRNA
transport regulator 3)-homolog (yeast) [Homo sapiens]
Length = 174
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 59/107 (55%), Gaps = 3/107 (2%)
Query: 112 GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIM 171
G + + + +L +ALE A+ L+ +P ++ L+LE GGS L ++ A +ALA AG+
Sbjct: 58 GGEEPEPAMVLQEALEPAMCLDRYPHVQLEASELLLEDGGSALATELNTAKLALAYAGME 117
Query: 172 MYDLVASVSVSCLGKNL---LIDPVLEEESYQDGSLMIACMPSRYEV 215
M DLV S + ++ L+DP+ EE + + +A +P +V
Sbjct: 118 MNDLVVSCGLGLAPGSVPTWLLDPMRLEEEHTAPGVTLALLPMLNQV 164
>gi|358399876|gb|EHK49213.1| hypothetical protein TRIATDRAFT_49744 [Trichoderma atroviride IMI
206040]
Length = 274
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 15/157 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR-- 94
LR D R ++ R + ++A GS+Y E G+TKV+ V GP E + +G
Sbjct: 13 LRIDGRRWNDLRRLHAQIHTQDAADGSSYLEMGHTKVMCVVTGPAEPQAGQKKGTVGSAQ 72
Query: 95 ---------LNCNVSYTTFAT----PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVD 141
+ NV F++ ++ + KAL + FP +T+
Sbjct: 73 ATGQKEGASIVVNVVVAGFSSVDRKRRGRNDRRIQEMEITIQKALAANLHTHLFPHSTIT 132
Query: 142 VFALVLESGGSDLPVVISCASVALADAGIMMYDLVAS 178
V VL GS L +I+ ++A+ DAGI M D + +
Sbjct: 133 VSLHVLSQDGSLLAALINATTLAVIDAGIPMTDYITA 169
>gi|403251154|ref|ZP_10917511.1| RNase PH [actinobacterium SCGC AAA027-L06]
gi|402915555|gb|EJX36521.1| RNase PH [actinobacterium SCGC AAA027-L06]
Length = 241
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 84/193 (43%), Gaps = 23/193 (11%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI-VSVFGPRESKKAMMYSNIGRLN 96
R D R Q RP F +N+A GS EFGNT+V+ V+ F P + ++ G +
Sbjct: 3 RSDDRSNDQLRPIKFTRNWLNNAEGSVLVEFGNTRVLCVASFTP-GVPRWLVGKGEGWVT 61
Query: 97 CNVSYTTFATPVRGQ--------GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ AT R G ++ S ++ ++L G + ++ + T+ + VL+
Sbjct: 62 SEYAMLPRATHTRSDRESVKGKLGGRTQEISRLVGRSLRGIVDMKALGENTIVIDCDVLQ 121
Query: 149 SGGSDLPVVISCASVALADA-------GIMMYD------LVASVSVSCLGKNLLIDPVLE 195
+ G I+ A VALADA G + D VA+VSV + +D E
Sbjct: 122 ADGGTRTAAITGAYVALADAITWAKEKGHIATDSKPLAQSVAAVSVGIVNGKPTLDLCYE 181
Query: 196 EESYQDGSLMIAC 208
E+ + + I C
Sbjct: 182 EDVSAETDMNIVC 194
>gi|302560437|ref|ZP_07312779.1| ribonuclease PH [Streptomyces griseoflavus Tu4000]
gi|302478055|gb|EFL41148.1| ribonuclease PH [Streptomyces griseoflavus Tu4000]
Length = 245
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 90/237 (37%), Gaps = 23/237 (9%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R Q RP G A GS FG+TKV+ + + S G +
Sbjct: 3 RIDGRTPDQLRPVSIERGWSKHAEGSVLVSFGDTKVLCTASVTEGVPRWRKGSGEGWVTA 62
Query: 98 NVSYTTFATPVRGQ--------GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ AT RG G + S ++ ++L I + + TV + VL++
Sbjct: 63 EYAMLPRATNTRGDRESVRGRIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQA 122
Query: 150 GGSDLPVVISCASVALADAGIMMYD-------------LVASVSVSCLGKNLLIDPVLEE 196
G I+ A VALADA D V++VSV +G L+D EE
Sbjct: 123 DGGTRTAAITGAYVALADAVQWAQDKKLVRAGRRPLTGTVSAVSVGIVGGVPLLDLRYEE 182
Query: 197 ESYQDGSLMIACM-PSRYEVTQLTVTGE-WSTPHFNEAMQLCLDASAKLGKIMRSCL 251
+ D + + C R+ Q T E ++ N + L + A+L R L
Sbjct: 183 DVKADTDMNVVCTGDGRFVEVQGTAEAEPFARDELNALLDLAVTGCAELAAAQRKAL 239
>gi|126652561|ref|ZP_01724726.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. B14905]
gi|126590689|gb|EAZ84805.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. B14905]
Length = 704
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 79/190 (41%), Gaps = 20/190 (10%)
Query: 10 TAKATYSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFG 69
T K Y+ +D + + + D +RPD R + R TG + GS G
Sbjct: 289 TMKQVYTILD--KMVKDEVRRQITEDKIRPDGRKLDEIRQLSSETGILQRTHGSGLFTRG 346
Query: 70 NTKV-------------IVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHK 116
T+ I+ G ESK+ M + N + + + P+RG G
Sbjct: 347 QTQALSICTLGALGDVQIIDGLGVEESKRFMHHYNFPQFSVGET-----GPIRGPGRREI 401
Query: 117 DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLV 176
++ +ALE I E+ T+ + VLES GS I +++A+ DAG+ + V
Sbjct: 402 GHGALGERALEAVIPDESVFPYTIRCVSEVLESNGSTSQASICASTLAMMDAGVPLKAPV 461
Query: 177 ASVSVSCLGK 186
A +++ + K
Sbjct: 462 AGIAMGLIKK 471
>gi|357590755|ref|ZP_09129421.1| ribonuclease PH [Corynebacterium nuruki S6-4]
Length = 260
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 103/240 (42%), Gaps = 25/240 (10%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGP---RESKKAM 87
D+ R D R + RP G + +GS EFGNT+V+ VS P R+S +
Sbjct: 9 DFTRFDGRAVDEMRPVRITRGFTTNPAGSVLIEFGNTRVMCTASVSEGVPRFKRDSGEGW 68
Query: 88 MYSNIGRLNCNVSYTTFATPVRG--QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFAL 145
+ + L + ++G +G H + S ++ ++L A+ L + TV++
Sbjct: 69 LTAEYAMLPSATAERMPRESLKGKVKGRTH-EISRLVGRSLRAAVDLRGLGENTVNIDCD 127
Query: 146 VLESGGSDLPVVISCASVALADA-----------GIMMYDLVASVSVSCLGKNLLIDPVL 194
VL++ G I+ A VALADA G + D VA+VSV + +D
Sbjct: 128 VLQADGGTRTASITGAYVALADALAVLQKRGVVPGRPLLDPVAAVSVGVIDGVPCLDLPY 187
Query: 195 EEESYQDGSLMIACMPSRYEVTQLTVTG---EWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
E+S D + + M + + ++ TG E+S N+ + L L + R L
Sbjct: 188 PEDSRADVDMNV-VMTAEGKFVEIQGTGEHAEFSRSELNDLLDLAEGGLHDLVDLQRRSL 246
>gi|449018157|dbj|BAM81559.1| similar to ribosomal RNA processing exonuclease RRP41
[Cyanidioschyzon merolae strain 10D]
Length = 313
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 85/199 (42%), Gaps = 42/199 (21%)
Query: 55 GAVNSASGSAYAEFGNTKVIVSVFGPR----------ESKKAMMYSNIGRLNCNVSYTTF 104
G ++ GSA + G TKV+ +VFGPR E ++ G + +S T
Sbjct: 43 GVLSRPEGSAVCQLGKTKVVAAVFGPRPPQGSTDTDTELATVVVEYRQGLSSRPLSIQTL 102
Query: 105 AT--------------------PVRGQGS---DHKDFSSMLHKALEGAIILETFPKTTVD 141
+ P RG+ + + F++ L ++LE I +P+
Sbjct: 103 ESDTISTGLQFAGGESDEQRWAPSRGRATLSETERRFAAALTRSLECVIARTEYPRLQFW 162
Query: 142 VFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLG--------KNLLIDPV 193
V+ VLE GGS+L + + A A DAG+ + D + VSV+ + + P
Sbjct: 163 VYIWVLEEGGSELALATTAAWAACLDAGVALVDALVGVSVAVNATPGYAGTEQTCIAFPT 222
Query: 194 LEEE-SYQDGSLMIACMPS 211
EEE S +G L +A +P+
Sbjct: 223 SEEEASAHEGRLWVALLPN 241
>gi|19112052|ref|NP_595260.1| exosome subunit Rrp46 (predicted) [Schizosaccharomyces pombe 972h-]
gi|29336579|sp|O42894.1|RRP46_SCHPO RecName: Full=Exosome complex component rrp46; AltName:
Full=Ribosomal RNA-processing protein 46
gi|2956749|emb|CAA17913.1| exosome subunit Rrp46 (predicted) [Schizosaccharomyces pombe]
Length = 226
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 14/154 (9%)
Query: 53 RTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQG 112
R G ++ + GS+ + G+ +VI V GP + K RLN + PV G
Sbjct: 3 RIGILSRSDGSSEWKQGSARVICGVNGPIDVK-----IRDERLN-KATVEVLVQPVSGVA 56
Query: 113 SD-HKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSD-LPVVISCASVALADAGI 170
K SS + LE AI L T+P+T + V ++E G+D L VI+ A +AL DAGI
Sbjct: 57 ETLEKMISSRIVGILEDAIFLNTYPRTLIQVSIQIIEEDGTDTLAAVINGAVLALLDAGI 116
Query: 171 MMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSL 204
+ + +++C KN + ++E DG++
Sbjct: 117 SLKYI--PCAINCHWKN----KITQDEPDVDGTI 144
>gi|429728767|ref|ZP_19263471.1| tRNA nucleotidyltransferase [Peptostreptococcus anaerobius VPI
4330]
gi|429147742|gb|EKX90764.1| tRNA nucleotidyltransferase [Peptostreptococcus anaerobius VPI
4330]
Length = 475
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 98/243 (40%), Gaps = 29/243 (11%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
RPD R Q R ++GS E GNTKVI + M + G +
Sbjct: 26 RPDGRSLDQIRDVKITRNYTKYSAGSVLIEVGNTKVICTASIEEGVPHFMKGAGSGWITA 85
Query: 98 NVSYTTFATPVRGQGSDHK--------DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
S AT R + K + ++ +++ + +E + T+ + V+++
Sbjct: 86 EYSMLPSATESRKKRDSSKGKVDGRSQEIQRLIGRSIRSVVDMEALGERTIWIDCDVIQA 145
Query: 150 GGSDLPVVISCASVALADAGIMMY-----------DLVASVSVSCLGKNLLIDPVLEEES 198
G I+ A VALADA +Y +L+A++S+ + + +D EE+S
Sbjct: 146 DGGTRTASITGAYVALADALYKLYKSGQIKKMPVKNLLAAISIGIIDDEVRLDICYEEDS 205
Query: 199 YQDGSLMI---ACMPSRYEVTQLTVTGE---WSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
M+ M +R E ++ TGE ++ + ++L + L ++ R L
Sbjct: 206 ----KAMVDTNVVMNNRGEFIEIQGTGEERPFTREELSRILELAEKGNRDLMRLQRQALG 261
Query: 253 EAA 255
E A
Sbjct: 262 EVA 264
>gi|427416381|ref|ZP_18906564.1| RNAse PH [Leptolyngbya sp. PCC 7375]
gi|425759094|gb|EKU99946.1| RNAse PH [Leptolyngbya sp. PCC 7375]
Length = 240
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 62/139 (44%), Gaps = 6/139 (4%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
W RPD R ++ RP F A+GS A GNT+V+ +V + + + S G L
Sbjct: 3 WQRPDGRQPNELRPVKFERRFTRYAAGSVLAHCGNTQVLCTVSASEDVPRWLKDSGQGWL 62
Query: 96 NCNVSYTTFATPVRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
AT R + K + ++ ++L A+ LE + T+ V A V+++
Sbjct: 63 TAEYRMLPSATHTRTRRELMKLSGRTQEIQRLIGRSLRAALDLEALGEITLTVDADVIQA 122
Query: 150 GGSDLPVVISCASVALADA 168
G I+ A VAL DA
Sbjct: 123 DGGTRTTAITGAYVALEDA 141
>gi|308378909|ref|ZP_07484288.2| ribonuclease rphA [Mycobacterium tuberculosis SUMu010]
gi|308358854|gb|EFP47705.1| ribonuclease rphA [Mycobacterium tuberculosis SUMu010]
Length = 296
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 104/245 (42%), Gaps = 21/245 (8%)
Query: 2 AAKPSTTTTAKATYSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSAS 61
+A+P ++TA+ T K+ P S V R D R H+ RP G + +
Sbjct: 5 SARPRPSSTARCTRWYATRRSKSGEPARSRVGVVSKREDGRLDHELRPVIITRGFTENPA 64
Query: 62 GSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFAT-------PVRGQGSD 114
GS EFG+TKV+ + + + +G L + AT VRG+ S
Sbjct: 65 GSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTAEYAMLPSATHSRSDRESVRGRLSG 124
Query: 115 H-KDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMY 173
++ S ++ ++L I L + T+ + VL++ G I+ A VALADA +
Sbjct: 125 RTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGGTRTAAITGAYVALADAVTYLS 184
Query: 174 D------------LVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVT 221
+A+VSV + + +D EE+S + + + + + ++ T
Sbjct: 185 AAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEEDSRAEVDMNVVATDT-GTLVEIQGT 243
Query: 222 GEWST 226
GE +T
Sbjct: 244 GEGAT 248
>gi|289422671|ref|ZP_06424511.1| tRNA nucleotidyltransferase [Peptostreptococcus anaerobius 653-L]
gi|289156850|gb|EFD05475.1| tRNA nucleotidyltransferase [Peptostreptococcus anaerobius 653-L]
Length = 475
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 98/243 (40%), Gaps = 29/243 (11%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
RPD R Q R ++GS E GNTKVI + M + G +
Sbjct: 26 RPDGRSLDQIRDVKITRNYTKYSAGSVLIEVGNTKVICTASIEEGVPHFMKGAGSGWITA 85
Query: 98 NVSYTTFATPVRGQGSDHK--------DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
S AT R + K + ++ +++ + +E + T+ + V+++
Sbjct: 86 EYSMLPSATESRKKRDSSKGKVDGRSQEIQRLIGRSIRSVVDMEALGERTIWIDCDVIQA 145
Query: 150 GGSDLPVVISCASVALADAGIMMY-----------DLVASVSVSCLGKNLLIDPVLEEES 198
G I+ A VALADA +Y +L+A++S+ + + +D EE+S
Sbjct: 146 DGGTRTASITGAYVALADALYKLYKSGQIKKMPVKNLLAAISIGIIDDEVRLDICYEEDS 205
Query: 199 YQDGSLMI---ACMPSRYEVTQLTVTGE---WSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
M+ M +R E ++ TGE ++ + ++L + L ++ R L
Sbjct: 206 ----KAMVDTNVVMNNRGEFIEIQGTGEERPFTRDELSRILELAEKGNRDLMRLQRQALG 261
Query: 253 EAA 255
E A
Sbjct: 262 EVA 264
>gi|148981863|ref|ZP_01816548.1| ribonuclease PH [Vibrionales bacterium SWAT-3]
gi|145960714|gb|EDK26055.1| ribonuclease PH [Vibrionales bacterium SWAT-3]
Length = 238
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 91/232 (39%), Gaps = 20/232 (8%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RP+ R Q RP A GS EFGNTKV+ + + + G +
Sbjct: 1 MRPNDRAVDQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60
Query: 97 CNVSYTTFATPVRG--------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
AT R QG + ++ ++L + L+ + + V V++
Sbjct: 61 AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEIMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADAGIMMYD-----------LVASVSVSCLGKNLLIDPVLEEE 197
+ G IS ASVA+ADA + D VA+VSV +G L D E+
Sbjct: 121 ADGGTRTASISGASVAMADAIKSLIDSGKLKKNPMKGHVAAVSVGIVGAEALCDLEYVED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRS 249
S D + + M ++ ++ T E E M+L A+ + I+ +
Sbjct: 181 SAADTDMNV-VMTEDGKMIEIQGTAEGEPFSHEELMKLLALANKGIADIVEA 231
>gi|260579680|ref|ZP_05847543.1| tRNA nucleotidyltransferase [Corynebacterium jeikeium ATCC 43734]
gi|258602199|gb|EEW15513.1| tRNA nucleotidyltransferase [Corynebacterium jeikeium ATCC 43734]
Length = 256
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 108/246 (43%), Gaps = 23/246 (9%)
Query: 30 SGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPR---E 82
S + ++ R D R ++ RP G ++ +GS EFGNT+V+ V PR +
Sbjct: 10 SNAGSNFTRADGRATNELRPVRITRGFTSNPAGSVLVEFGNTRVMCTASVEEGVPRFKKD 69
Query: 83 SKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDH-KDFSSMLHKALEGAIILETFPKTTVD 141
S + + + L + ++G+ ++ S ++ +AL A+ L+ + TV+
Sbjct: 70 SGEGWLTAEYAMLPASTHERMPRESMKGKVKGRTQEISRLVGRALRAAVDLKELGENTVN 129
Query: 142 VFALVLESGGSDLPVVISCASVALADA-----------GIMMYDLVASVSVSCLGKNLLI 190
+ VL++ G I+ A VALADA G + VA+VSV + +
Sbjct: 130 IDCDVLQADGGTRTAAITGAYVALADALAVLQARGVVPGQPLRAPVAAVSVGIIDGVPCL 189
Query: 191 DPVLEEESYQDGSLMIACMPSRYEVTQLTVTG---EWSTPHFNEAMQLCLDASAKLGKIM 247
D EE+S D + +A M + ++ TG E++ N + L +L +
Sbjct: 190 DLPYEEDSRADVDMNVA-MTAEGRFVEIQGTGENAEFTREELNTLLDLAEGGLRELIEAQ 248
Query: 248 RSCLKE 253
R+ L +
Sbjct: 249 RAALAQ 254
>gi|77361698|ref|YP_341273.1| ribonuclease PH [Pseudoalteromonas haloplanktis TAC125]
gi|123588968|sp|Q3IJI0.1|RNPH_PSEHT RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|76876609|emb|CAI87831.1| RNase PH (tRNA nucleotidyltransferase) [Pseudoalteromonas
haloplanktis TAC125]
Length = 237
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 58/140 (41%), Gaps = 8/140 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RP R +Q RP F A GS EFGNTKV+ + + M G +N
Sbjct: 1 MRPSERTANQIRPVTFTRNYTLHAEGSVLVEFGNTKVLCTATVESGVPRFMKGQGKGWIN 60
Query: 97 CNVSYTTFATPVRG--------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
AT R QG + ++ +AL A+ L+ + T+ + V++
Sbjct: 61 AEYGMLPRATHTRNAREAARGKQGGRTMEIQRLIARALRAAVDLKALGENTITIDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA 168
+ G IS A VAL DA
Sbjct: 121 ADGGTRTASISGACVALVDA 140
>gi|433463506|ref|ZP_20421059.1| polynucleotide phosphorylase/polyadenylase [Halobacillus sp.
BAB-2008]
gi|432187506|gb|ELK44791.1| polynucleotide phosphorylase/polyadenylase [Halobacillus sp.
BAB-2008]
Length = 707
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 99/231 (42%), Gaps = 30/231 (12%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI-VSVFGP------------R 81
D +RPD RG + RP R G + GS G T+ + V+ G
Sbjct: 313 DKIRPDGRGVDEIRPLTSRVGLLPRTHGSGLFTRGQTQALSVATLGALGDVQILDGLDLE 372
Query: 82 ESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILET-FPKTTV 140
ESK+ M + N + + + P+RG G ++ +ALE I E FP T+
Sbjct: 373 ESKRFMHHYNFPKFSVGET-----GPIRGPGRREIGHGALGERALEKVIPSEKDFP-YTI 426
Query: 141 DVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKN----LLIDPVLEE 196
+ + VLES GS I +++A+ DAG+ + VA +++ + + +L D E
Sbjct: 427 RLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSDDDYTILTDIQGME 486
Query: 197 ESYQDGSLMIACMPSRYEVTQLTVTGE-WSTPHFNEAMQLCLDASAKLGKI 246
++ D +A Q+ + E S +EA+ A AK G++
Sbjct: 487 DALGDMDFKVAGTAKGVTALQMDIKIEGLSREILDEAL-----AQAKKGRM 532
>gi|425769344|gb|EKV07839.1| Exosome complex component ski6 [Penicillium digitatum Pd1]
gi|425771116|gb|EKV09570.1| Exosome complex component ski6 [Penicillium digitatum PHI26]
Length = 508
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 10/150 (6%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSN----- 91
LR D R +++ R + ++SGS+Y GNT ++ SV GP E ++
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTSIMCSVHGPAEGRRGDGGGGAAGSG 73
Query: 92 --IGRLNCNVS-YTTFATPVRGQGSDHKD--FSSMLHKALEGAIILETFPKTTVDVFALV 146
+ ++ NV+ + R GSD + ++ L A + + +P +T+ + V
Sbjct: 74 HAVVEVDVNVAGFAGVDRKRRAGGSDRQSSRIATTLRSAFQSHLHTYLYPHSTISIHVSV 133
Query: 147 LESGGSDLPVVISCASVALADAGIMMYDLV 176
L + GS L I+ ++AL DAGI M L+
Sbjct: 134 LSADGSLLAAAINACTLALVDAGIPMPGLL 163
>gi|392543668|ref|ZP_10290805.1| ribonuclease PH [Pseudoalteromonas piscicida JCM 20779]
gi|409200966|ref|ZP_11229169.1| ribonuclease PH [Pseudoalteromonas flavipulchra JG1]
Length = 237
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 61/140 (43%), Gaps = 8/140 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RP R +Q RP F A GS EFGNTKV+ V PR K K +
Sbjct: 1 MRPSERTANQIRPVTFTRNYTMHAEGSVMVEFGNTKVLCTASVEAGVPRFMKGQGKGWIT 60
Query: 90 SNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L + RG QG + ++ +AL A+ L+ + T+ + V++
Sbjct: 61 AEYGMLPRSTHTRNNREAARGKQGGRTMEIQRLIARALRAAVDLKALGENTITIDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA 168
+ G IS A VAL DA
Sbjct: 121 ADGGTRTASISGACVALVDA 140
>gi|315606171|ref|ZP_07881199.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 180 str.
F0310]
gi|315312129|gb|EFU60218.1| tRNA nucleotidyltransferase [Actinomyces sp. oral taxon 180 str.
F0310]
Length = 255
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 102/239 (42%), Gaps = 23/239 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI-VSVF------GPRESKKAMMY 89
LR D R Q RP G + GS EFGNT+V+ V+ F R+S + +
Sbjct: 6 LRADGRTPSQLRPVSLTRGWSGTGEGSVLVEFGNTRVLCVASFTEGVPRWKRDSGEGWVT 65
Query: 90 SNIGRLNCNVSYTTFATPVRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ L + V+G+ G ++ S ++ ++L G + + + T+ + VL
Sbjct: 66 AEYSMLPRATEQRSSRESVKGKVGGRTQEISRLIGRSLRGIVDVSALGENTIVLDCDVLR 125
Query: 149 SGGSDLPVVISCASVALADA-------GIM------MYDLVASVSVSCLGKNLLID-PVL 194
+ G ++ A VALADA GI+ + D V++VSV + + D P +
Sbjct: 126 ADGGTRTASVTGAYVALADAIAWAKERGILTPSARVLTDSVSAVSVGIIDGTAMADLPYV 185
Query: 195 EEESYQDGSLMIACMPSRY-EVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
E+ Q ++ R+ EV +S +E + L +A+L + + L+
Sbjct: 186 EDVRAQTDMNVVQTGDGRFIEVQGTAEHAPFSREELSELLDLATAGNAQLARAQKLALE 244
>gi|417951246|ref|ZP_12594353.1| ribonuclease PH [Vibrio splendidus ATCC 33789]
gi|342805198|gb|EGU40476.1| ribonuclease PH [Vibrio splendidus ATCC 33789]
Length = 238
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 91/232 (39%), Gaps = 20/232 (8%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RP+ R Q RP A GS EFGNTKV+ + + + G +
Sbjct: 1 MRPNDRAVDQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60
Query: 97 CNVSYTTFATPVRG--------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
AT R QG + ++ ++L + L+ + + V V++
Sbjct: 61 AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEIMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADAGIMMYD-----------LVASVSVSCLGKNLLIDPVLEEE 197
+ G IS ASVA+ADA + D VA+VSV +G L D E+
Sbjct: 121 ADGGTRTASISGASVAMADAIKSLLDSGKLKKNPMKGHVAAVSVGIVGAEALCDLEYVED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRS 249
S D + + M ++ ++ T E E M+L A+ + I+ +
Sbjct: 181 SAADTDMNV-VMTEDGKMIEIQGTAEGEPFSHEELMKLLALANKGIADIVEA 231
>gi|124487858|gb|ABN12012.1| hypothetical protein [Maconellicoccus hirsutus]
Length = 138
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 67/121 (55%), Gaps = 1/121 (0%)
Query: 133 ETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNL-LID 191
E +P + +D++ VL++ GS+ ++ A++AL DAGI + + + + S S ++ LID
Sbjct: 1 ELYPFSQIDIYLEVLQADGSNYCTCVNAATLALIDAGIPLKEYIIACSASLGNGDVPLID 60
Query: 192 PVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
EES +L IA +P ++T L ++ ++ H + + ++ ++ KI+ S +
Sbjct: 61 VSHLEESLGGSNLTIAALPLSGQITVLEMSQKFHIDHLPQVLNEAMNGCQQIYKILDSAV 120
Query: 252 K 252
K
Sbjct: 121 K 121
>gi|29831713|ref|NP_826347.1| ribonuclease PH [Streptomyces avermitilis MA-4680]
gi|61216038|sp|Q82D17.1|RNPH_STRAW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|29608829|dbj|BAC72882.1| putative ribonuclease PH [Streptomyces avermitilis MA-4680]
Length = 244
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 90/238 (37%), Gaps = 23/238 (9%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R Q RP G A GS FG+TKV + + S G +
Sbjct: 3 RIDGRTPEQLRPITIERGWSKHAEGSVLVSFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62
Query: 98 NVSYTTFATPVRGQ--------GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
S AT RG G + S ++ ++L I + + T+ + VL++
Sbjct: 63 EYSMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122
Query: 150 GGSDLPVVISCASVALADAGIM-------------MYDLVASVSVSCLGKNLLIDPVLEE 196
G I+ A VALADA + V++VSV +G L+D EE
Sbjct: 123 DGGTRTAAITGAYVALADAVAWAQGRKLVKAGRKPLTGTVSAVSVGIVGGVPLLDLCYEE 182
Query: 197 ESYQDGSLMIACM-PSRYEVTQLTVTGE-WSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
+ D + + C R+ Q T E + N + L + +L I R+ L+
Sbjct: 183 DVKADTDMNVVCTGDGRFVEVQGTAEAEPFDRKELNALLDLAVSGCDELAVIQRAALE 240
>gi|343511497|ref|ZP_08748657.1| ribonuclease PH [Vibrio scophthalmi LMG 19158]
gi|343515605|ref|ZP_08752657.1| ribonuclease PH [Vibrio sp. N418]
gi|342797939|gb|EGU33574.1| ribonuclease PH [Vibrio scophthalmi LMG 19158]
gi|342798036|gb|EGU33669.1| ribonuclease PH [Vibrio sp. N418]
Length = 238
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 82/207 (39%), Gaps = 20/207 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RP+ R Q RP A GS EFGNTKV+ + M G +
Sbjct: 1 MRPNDRKADQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNASIEENVPHWMKGKGKGWVT 60
Query: 97 CNVSYTTFATPVRG--------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
AT R QG + ++ ++L + L+ + + V V++
Sbjct: 61 AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA-------GIM----MYDLVASVSVSCLGKNLLIDPVLEEE 197
+ G IS ASVALADA G + M VA+VSV LG ++L D E+
Sbjct: 121 ADGGTRTASISGASVALADAFQHLIEKGKLKKNPMKGHVAAVSVGLLGDDVLCDLEYVED 180
Query: 198 SYQDGSL-MIACMPSRYEVTQLTVTGE 223
S D + ++ R Q T GE
Sbjct: 181 SAADTDMNVVMTEDGRMIEVQGTAEGE 207
>gi|294629581|ref|ZP_06708141.1| ribonuclease PH [Streptomyces sp. e14]
gi|292832914|gb|EFF91263.1| ribonuclease PH [Streptomyces sp. e14]
Length = 241
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 92/239 (38%), Gaps = 23/239 (9%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R Q RP G A GS FG+T+V+ + + S G +
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLVSFGDTRVLCTASVTEGVPRWRKGSGEGWVTA 62
Query: 98 NVSYTTFATPVRGQ--------GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ AT RG G + S ++ ++L I + + TV + VL++
Sbjct: 63 EYAMLPRATNTRGDRESVKGRIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQA 122
Query: 150 GGSDLPVVISCASVALADAGIM-------------MYDLVASVSVSCLGKNLLIDPVLEE 196
G I+ A VALADA + V++VSV +G L+D EE
Sbjct: 123 DGGTRTAAITGAFVALADAVAWAQGKKLIKTGRQPLTGTVSAVSVGIVGGVPLLDLCYEE 182
Query: 197 ESYQDGSLMIACM-PSRYEVTQLTVTGE-WSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
+ D + + C R+ Q T E ++ N + L + L I R+ L++
Sbjct: 183 DVRADTDMNVVCTGDGRFVEVQGTAEAEPFARDELNALLDLAVAGCTDLAAIQRAALEK 241
>gi|326430537|gb|EGD76107.1| hypothetical protein PTSG_00813 [Salpingoeca sp. ATCC 50818]
Length = 219
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 8/162 (4%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R + RP ++ GSA FG++ V+ +V+GPR+ + S
Sbjct: 5 RVDGRKAMELRPMQCDLALLDKPDGSASFSFGDSSVMAAVYGPRD----VPLSREKHDRS 60
Query: 98 NVSYTTFATPVRGQGSDHKDFSSMLHKALEGAII-LETFPKTTVDVFALVLESGGSDLPV 156
V + P QG+ S L + + A+ + FP++ + V L + G L
Sbjct: 61 TVEVAWHSAPDNEQGAA---LQSHLTEFVVNALASIHDFPRSAIRVVIQELNNDGGMLAC 117
Query: 157 VISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEES 198
I+ +AL DAGI + + A+ S + + L++DP L E++
Sbjct: 118 AINATCLALMDAGISLTAMFAAASCAVVDGQLILDPTLIEQN 159
>gi|322436088|ref|YP_004218300.1| ribonuclease PH [Granulicella tundricola MP5ACTX9]
gi|321163815|gb|ADW69520.1| ribonuclease PH [Granulicella tundricola MP5ACTX9]
Length = 245
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 19/180 (10%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGP---RESKKAMMYS 90
RPD+R +Q RP G V++ GS E GNT+V+ + P R S K + +
Sbjct: 7 RPDNRTANQLRPTRITPGYVSTPEGSVLIEVGNTRVLCNATIETGVPGWMRNSGKGWVTA 66
Query: 91 NIGRLNCNVSYTTFATPVRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
G L + +G+ G + ++ ++L G + + + T+ + VL++
Sbjct: 67 EYGMLPRATLTRSPREAEKGKIGGRTHEIQRLIGRSLRGIVDMRALGERTIILDCDVLQA 126
Query: 150 GGSDLPVVISCASVALA-------DAGIM----MYDLVASVSVSCLGKNLLIDPVLEEES 198
G I+ ASVALA AG + + ++A+ SV + N L+D EE+S
Sbjct: 127 DGGTRTAAITGASVALAIALGKLVQAGTLKASPLKQMIAATSVGIVDGNTLLDLAYEEDS 186
>gi|308509680|ref|XP_003117023.1| CRE-CRN-5 protein [Caenorhabditis remanei]
gi|308241937|gb|EFO85889.1| CRE-CRN-5 protein [Caenorhabditis remanei]
Length = 214
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 94/220 (42%), Gaps = 19/220 (8%)
Query: 46 QCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFA 105
+C +F + +A GSA G+T + S GP + + +N + ++SY
Sbjct: 9 RCELSFLK-----NADGSACFSQGSTCIWASCSGPGDVHASK--ANEEAMTLDISY---- 57
Query: 106 TPVRGQGSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASV 163
R D+K ++++ + AI LE FP TT+ V ++ GS V I+ A
Sbjct: 58 ---RANCGDNKFSVLNNIIQSTISKAINLELFPHTTIAVTIHGIQDDGSIGAVAINGACF 114
Query: 164 ALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACM---PSRYEVTQLTV 220
AL D G+ + V V + L+IDP ++E+ G ++ A EV +
Sbjct: 115 ALLDNGMPFEAVFCGVLVVRVKDELIIDPTAKQEASSTGRVLFAVFNGTDGHPEVCSMDA 174
Query: 221 TGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASDEQE 260
G+W A L ++ + + RS ++ S ++
Sbjct: 175 IGQWDFNQLEAAWSLAQPSATAIFEFYRSVMQRKHSIDEH 214
>gi|213965923|ref|ZP_03394114.1| ribonuclease PH [Corynebacterium amycolatum SK46]
gi|213951501|gb|EEB62892.1| ribonuclease PH [Corynebacterium amycolatum SK46]
Length = 253
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 94/212 (44%), Gaps = 22/212 (10%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
D+ R D R + R G ++ +GS FGNT+V+ + + + S G
Sbjct: 7 DFRRADGRAVDEMRKVTITRGFTDNPAGSVLVTFGNTRVMCTASVEQSVPRFKRDSGEGW 66
Query: 95 LNCNVSYTTFAT-------PVRGQ--GSDHKDFSSMLHKALEGAIILETFPKTTVDVFAL 145
L S +T +RG+ G H + S ++ ++L AI L+ + T+++
Sbjct: 67 LTAEYSMLPASTHERMPRESMRGKVKGRTH-EISRLIGRSLRAAIDLKELGENTINIDCD 125
Query: 146 VLESGGSDLPVVISCASVALADAGIMMYDL-----------VASVSVSCLGKNLLIDPVL 194
VL++ G I+ A VALADA ++ + VA+VSV + + +D
Sbjct: 126 VLQADGGTRTASITGAYVALADALTYLHAVGAVPGTPLKAPVAAVSVGIIDGRVCLDLPY 185
Query: 195 EEESYQDGSLMIACMPSRYEVTQLTVTGEWST 226
EE+S + L + M + + ++ TGE T
Sbjct: 186 EEDSRAEVDLNV-VMTAEGKFVEIQGTGEEGT 216
>gi|440694444|ref|ZP_20877062.1| tRNA nucleotidyltransferase [Streptomyces turgidiscabies Car8]
gi|440283554|gb|ELP70805.1| tRNA nucleotidyltransferase [Streptomyces turgidiscabies Car8]
Length = 245
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 90/240 (37%), Gaps = 23/240 (9%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R Q RP G A GS FG+TKV + + S G +
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLVSFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62
Query: 98 NVSYTTFATPVRGQ--------GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
S AT RG G + S ++ ++L I + + T+ + VL++
Sbjct: 63 EYSMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122
Query: 150 GGSDLPVVISCASVALADAGIM-------------MYDLVASVSVSCLGKNLLIDPVLEE 196
G I+ A VALADA + V++VSV +G L+D EE
Sbjct: 123 DGGTRTAAITGAYVALADAITWAQGKKLIRASRQPLTGTVSAVSVGIVGGVPLLDLCYEE 182
Query: 197 ESYQDGSLMIACM-PSRYEVTQLTVTGE-WSTPHFNEAMQLCLDASAKLGKIMRSCLKEA 254
+ + + + C R+ Q T E ++ N + L + A L + R L A
Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEAEPFARDELNSILDLAVAGCADLAALQRKALDTA 242
>gi|145296503|ref|YP_001139324.1| ribonuclease PH [Corynebacterium glutamicum R]
gi|166228277|sp|A4QGQ6.1|RNPH_CORGB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|140846423|dbj|BAF55422.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 245
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 92/213 (43%), Gaps = 30/213 (14%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESKKAMMYSNIG 93
R D R Q R G ++ +GS EFGNT+V+ V + PR + S G
Sbjct: 9 RFDGRAQDQMRAVKITRGFTSNPAGSVLVEFGNTRVMCTASVELGVPRFKRD----SGEG 64
Query: 94 RLNCNVSYTTFATPVRG---------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFA 144
L + AT R +G H + S ++ ++L A+ L + T+ +
Sbjct: 65 WLTAEYAMLPAATAERNRRESMAGKVKGRTH-EISRLIGRSLRAAVDLSQLGENTIAIDC 123
Query: 145 LVLESGGSDLPVVISCASVALADAGIMMYDL-----------VASVSVSCLGKNLLIDPV 193
VL++ G I+ A VALADA ++ + VA+VSV + N+ +D
Sbjct: 124 DVLQADGGTRTASITGAYVALADAIKVLQERGVVPGSPLLAPVAAVSVGLVDGNVCLDLP 183
Query: 194 LEEESYQDGSLMIACMPSRYEVTQLTVTGEWST 226
EE+S D L + M E ++ TGE +T
Sbjct: 184 YEEDSRADVDLNV-VMTEHGEFVEIQGTGEETT 215
>gi|23308945|ref|NP_601703.2| ribonuclease PH [Corynebacterium glutamicum ATCC 13032]
gi|62391341|ref|YP_226743.1| ribonuclease PH [Corynebacterium glutamicum ATCC 13032]
gi|417971899|ref|ZP_12612816.1| ribonuclease PH [Corynebacterium glutamicum S9114]
gi|24638170|sp|Q8NMR4.1|RNPH_CORGL RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|21325272|dbj|BAB99894.1| RNase PH [Corynebacterium glutamicum ATCC 13032]
gi|41326682|emb|CAF21164.1| PROBABLE RIBONUCLEASE PH [Corynebacterium glutamicum ATCC 13032]
gi|344043857|gb|EGV39544.1| ribonuclease PH [Corynebacterium glutamicum S9114]
gi|385144596|emb|CCH25635.1| ribonuclease PH [Corynebacterium glutamicum K051]
Length = 245
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 92/213 (43%), Gaps = 30/213 (14%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESKKAMMYSNIG 93
R D R Q R G ++ +GS EFGNT+V+ V + PR + S G
Sbjct: 9 RFDGRAQDQMRAVKITRGFTSNPAGSVLVEFGNTRVMCTASVELGVPRFKRD----SGEG 64
Query: 94 RLNCNVSYTTFATPVRG---------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFA 144
L + AT R +G H + S ++ ++L A+ L + T+ +
Sbjct: 65 WLTAEYAMLPAATAERNRRESMAGKVKGRTH-EISRLIGRSLRAAVDLSQLGENTIAIDC 123
Query: 145 LVLESGGSDLPVVISCASVALADAGIMMYDL-----------VASVSVSCLGKNLLIDPV 193
VL++ G I+ A VALADA ++ + VA+VSV + N+ +D
Sbjct: 124 DVLQADGGTRTASITGAYVALADAIKVLQERGVVPGSPLLAPVAAVSVGLVDGNVCLDLP 183
Query: 194 LEEESYQDGSLMIACMPSRYEVTQLTVTGEWST 226
EE+S D L + M E ++ TGE +T
Sbjct: 184 YEEDSRADVDLNV-VMTEHGEFVEIQGTGEETT 215
>gi|392408713|ref|YP_006445320.1| RNAse PH [Desulfomonile tiedjei DSM 6799]
gi|390621849|gb|AFM23056.1| RNAse PH [Desulfomonile tiedjei DSM 6799]
Length = 240
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 92/208 (44%), Gaps = 19/208 (9%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIG 93
++++RPD+R F + RP + G ++ A GSA E G TKVI + + N G
Sbjct: 1 MNYVRPDNRQFDELRPWNIQVGVLDYAEGSALVESGKTKVICAATIEDRVPSFLKDQNRG 60
Query: 94 RLNCNVSYTTFATPVR------GQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALV 146
+ S +T R G+ G + ++ ++L L+ + T+ V V
Sbjct: 61 WVTAEYSMLPRSTLTRSPRERGGKIGGRTMEIQRLIGRSLRCVTDLDALGECTITVDCDV 120
Query: 147 LESGGSDLPVVISCASVALADA-----------GIMMYDLVASVSVSCLGKNLLIDPVLE 195
+++ G I+ A VAL +A G M D VA++SV + L+D +
Sbjct: 121 IQADGGTRVASITGAWVALHEALKRLAQEGRLDGDPMLDSVAAISVGIVQGTELLDLNYD 180
Query: 196 EESYQDGSLMIACMPSRYEVTQLTVTGE 223
E+S + + I M R ++ ++ T E
Sbjct: 181 EDSSAEVDMNI-VMTGRGKLVEVQATAE 207
>gi|56750485|ref|YP_171186.1| ribonuclease PH [Synechococcus elongatus PCC 6301]
gi|81299882|ref|YP_400090.1| ribonuclease PH [Synechococcus elongatus PCC 7942]
gi|61215786|sp|Q5N4V3.1|RNPH_SYNP6 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|123557014|sp|Q31PB6.1|RNPH_SYNE7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|56685444|dbj|BAD78666.1| hypothetical protein [Synechococcus elongatus PCC 6301]
gi|81168763|gb|ABB57103.1| RNAse PH [Synechococcus elongatus PCC 7942]
Length = 238
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 94/228 (41%), Gaps = 21/228 (9%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
W+RPD R Q R F+ +GS A+FG T+V+ +V + + G L
Sbjct: 3 WIRPDGRRPDQLRAIAFQRRFTQFPAGSVLAQFGQTQVLCTVTIQAGVPRWLTGQGQGWL 62
Query: 96 NCNVSYTTFATPVRGQ------GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
ATP R ++ ++ ++L AI L+ + T+ + A VL++
Sbjct: 63 TAEYRMLPGATPDRQSREWLKLSGRTQEIQRLIGRSLRAAIDLKKLGERTLLIDADVLQA 122
Query: 150 GGSDLPVVISCASVALADA---GIMMYDL--------VASVSVSCLGKNLLIDPVLEEES 198
I+ + VAL DA I +L +A+VSV+ +G +DP E+
Sbjct: 123 DAGTRTTAINGSWVALQDAIAQLIAQGELTESPIQRSIAAVSVALIGGEAFLDPDYPEDV 182
Query: 199 YQDGSLMIACMPSRYEVTQLTVTGE---WSTPHFNEAMQLCLDASAKL 243
D + M R E+ ++ T E +S N + L A++
Sbjct: 183 QADVDCNV-VMGDRGELIEIQGTAEANPFSRTQLNHILDLAEQGIAQI 229
>gi|296412418|ref|XP_002835921.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629718|emb|CAZ80078.1| unnamed protein product [Tuber melanosporum]
Length = 278
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 62/124 (50%), Gaps = 5/124 (4%)
Query: 64 AYAEFGNTKVIVSVFGPRESKKA-MMYSNIGRLNCNVSYTTFA-TPVRGQGSDHK---DF 118
+Y E GNTKVI SV GP E + A S + +V + F+ T + +G K +
Sbjct: 69 SYVEHGNTKVICSVNGPIEPRAASARNSERATVTVDVCFAAFSGTDRKKRGKSDKRVLEM 128
Query: 119 SSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVAS 178
S L + ++ P++ V + +L GS L ++ A++AL DAG+ M D V +
Sbjct: 129 QSALSRTFATTLLTTLHPRSEVHISLHILSQDGSILATCVNAATLALVDAGVPMSDYVTA 188
Query: 179 VSVS 182
+V+
Sbjct: 189 CTVA 192
>gi|261196958|ref|XP_002624882.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Ajellomyces dermatitidis SLH14081]
gi|239596127|gb|EEQ78708.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Ajellomyces dermatitidis SLH14081]
Length = 293
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 92/224 (41%), Gaps = 38/224 (16%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK------AMMYS 90
LR D R +++ R + ++SGS+Y GNT VI V GP E ++ A +
Sbjct: 14 LRLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGA 73
Query: 91 NIGRLNCNVSYTTFATPVRGQ---GSDHK---DFSSMLHKALEGAIILETFPKTTVDVFA 144
+ ++ RG G D + D ++ L A + + +P +T+ +
Sbjct: 74 VVSVAVNVAGFSGVDRKKRGATGGGGDRQASTDLATALRDAFQPHLHTHLYPHSTISLHV 133
Query: 145 LVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGK---------------NLL 189
VL S GS I+ ++AL DAGI M L+ + +V G+ N
Sbjct: 134 SVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPAAPELARVGGINES 193
Query: 190 IDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAM 233
+DP+L+ MP E+ +TV P +++M
Sbjct: 194 LDPLLD-----------MSMPEEQELPFMTVANTNPAPTGDDSM 226
>gi|239609714|gb|EEQ86701.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Ajellomyces dermatitidis ER-3]
gi|327355373|gb|EGE84230.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Ajellomyces dermatitidis ATCC 18188]
Length = 293
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 92/224 (41%), Gaps = 38/224 (16%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK------AMMYS 90
LR D R +++ R + ++SGS+Y GNT VI V GP E ++ A +
Sbjct: 14 LRLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGA 73
Query: 91 NIGRLNCNVSYTTFATPVRGQ---GSDHK---DFSSMLHKALEGAIILETFPKTTVDVFA 144
+ ++ RG G D + D ++ L A + + +P +T+ +
Sbjct: 74 VVSVAVNVAGFSGVDRKKRGATGGGGDRQASTDLATALRDAFQPHLHTHLYPHSTISLHV 133
Query: 145 LVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGK---------------NLL 189
VL S GS I+ ++AL DAGI M L+ + +V G+ N
Sbjct: 134 SVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPAAPELARVGGINES 193
Query: 190 IDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAM 233
+DP+L+ MP E+ +TV P +++M
Sbjct: 194 LDPLLD-----------MSMPEEQELPFMTVANTNPAPTGDDSM 226
>gi|260893502|ref|YP_003239599.1| polyribonucleotide nucleotidyltransferase [Ammonifex degensii KC4]
gi|260865643|gb|ACX52749.1| polyribonucleotide nucleotidyltransferase [Ammonifex degensii KC4]
Length = 736
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 10/159 (6%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESKKAMMYS 90
+ +R D RGF RP G + GSA G T+V+ + G + +
Sbjct: 323 ERIRADGRGFKDIRPLSVEVGLLPRTHGSALFTRGQTQVLSVVTLGAVGDEQILDDLDLE 382
Query: 91 NIGRLNCNVSYTTFAT----PVRGQGSDHKDFSSMLHKALEGAIILE-TFPKTTVDVFAL 145
R + ++ F+T P+R G +++ +ALE I E FP T+ V +
Sbjct: 383 ESKRFMHHYNFPPFSTGEVRPIRSPGRREIGHGALVERALEAVIPDEDAFP-YTIRVVSE 441
Query: 146 VLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCL 184
VLES GS + +S+AL DAG+ + VA +++ +
Sbjct: 442 VLESNGSTSMASVCASSLALMDAGVPIKAPVAGIAMGLI 480
>gi|443289170|ref|ZP_21028264.1| Ribonuclease PH [Micromonospora lupini str. Lupac 08]
gi|385887848|emb|CCH16338.1| Ribonuclease PH [Micromonospora lupini str. Lupac 08]
Length = 244
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 93/238 (39%), Gaps = 24/238 (10%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
RPD RG Q RP G GS EFG T+V+ + + S +G +
Sbjct: 6 RPDGRGPSQLRPVTLTRGWSTHPEGSVLVEFGGTRVLCTASVTEGVPRWRKGSGLGWVTA 65
Query: 98 NVSYTTFATPVRGQ--------GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ AT R G + S ++ ++L +I L+ + +V + VL++
Sbjct: 66 EYAMLPRATNTRSDRESVKGRVGGRTHEISRLIGRSLRASIDLKALGENSVVLDCDVLQA 125
Query: 150 GGSDLPVVISCASVALADA-GIM-------------MYDLVASVSVSCLGKNLLIDPVLE 195
G I+ A VAL DA G + M+ VA+VSV + +D E
Sbjct: 126 DGGTRTAAITGAYVALHDAVGWLAARKALAGKPEKVMHRSVAAVSVGIIAGEARLDLCYE 185
Query: 196 EESYQDGSLMIACMPSR--YEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
E+ + + + C + EV G ++ + + L + A+L + R L
Sbjct: 186 EDVAAEVDMNVVCTGAGDFVEVQGTGEAGVFARDQLDSLLDLAVAGCAELAEAQRKAL 243
>gi|312880664|ref|ZP_07740464.1| RNAse PH [Aminomonas paucivorans DSM 12260]
gi|310783955|gb|EFQ24353.1| RNAse PH [Aminomonas paucivorans DSM 12260]
Length = 248
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 96/236 (40%), Gaps = 23/236 (9%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGP-------RESKKAMMYS 90
R D R F RP G A GSA FG+T+V+ + R S K + +
Sbjct: 3 RIDGRSFDALRPLELERGCNRYAEGSARIAFGHTQVLCTATVEDKVPPFLRGSGKGWVSA 62
Query: 91 NIGRLNCNVSYTTFATPVRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
L T RG+ + ++ ++ ++L A+ LE + TV + V+++
Sbjct: 63 EYAMLPRATHQRTPRDSTRGRPNARGQEIQRLIGRSLRAAVDLEALGERTVWIDCDVIQA 122
Query: 150 GGSDLPVVISCASVALADAGIMMYDL-----------VASVSVSCLGKNLLIDPVLEEES 198
G I+ A VAL DA + D VA+VSV LG L+D EE+S
Sbjct: 123 DGGTRTASITGAFVALVDALRWIRDRNGLPSLPLRHQVAAVSVGLLGGCPLLDLCYEEDS 182
Query: 199 YQDGSLMIACMPSRYEVTQLTVTGE---WSTPHFNEAMQLCLDASAKLGKIMRSCL 251
+ + M ++ TGE +S F+ + L A L ++ RS L
Sbjct: 183 GAEVDCNVV-MAEDGRFVEIQGTGEDALFSRASFDALLDLARQGIAALHRLQRSTL 237
>gi|381394488|ref|ZP_09920201.1| ribonuclease PH [Glaciecola punicea DSM 14233 = ACAM 611]
gi|379329743|dbj|GAB55334.1| ribonuclease PH [Glaciecola punicea DSM 14233 = ACAM 611]
Length = 237
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 96/236 (40%), Gaps = 21/236 (8%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RP SR Q RP A GS EFG+TKV+ + + M G +
Sbjct: 1 MRPSSRTASQIRPVTITRNFTIHAEGSVLIEFGDTKVLCNASVQEGVPRFMKGQGKGWIT 60
Query: 97 CNVSYTTFATPVRG--------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
S AT R QG + ++ ++L A+ L+ + T+ V V++
Sbjct: 61 AEYSMLPRATHTRSDREASRGKQGGRTLEIQRLIARSLRAAVDLKLLGENTITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA-------GIM----MYDLVASVSVSCLGKNLLIDPVLEEE 197
+ G I+ A VA+ DA GI+ + ++A+VSV N + D E+
Sbjct: 121 ADGGTRTASITGACVAMVDALSWMRAKGILKTNPLKHMIAAVSVGIYKGNPIADLEYTED 180
Query: 198 SYQDGSLMIACMPSRYEV-TQLTVTGE-WSTPHFNEAMQLCLDASAKLGKIMRSCL 251
S + + + + + Q T GE +S E + L A +L ++ RS L
Sbjct: 181 SVAETDMNVVMTETGKLIEVQGTAEGEPFSFDEMQEMLDLAHAAIKELFELQRSAL 236
>gi|396584104|ref|ZP_10484601.1| tRNA adenylyltransferase [Actinomyces sp. ICM47]
gi|395548322|gb|EJG15604.1| tRNA adenylyltransferase [Actinomyces sp. ICM47]
Length = 255
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 101/239 (42%), Gaps = 23/239 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI-VSVF------GPRESKKAMMY 89
LR D R Q RP G + GS EFGNT+V+ V+ F R+S + +
Sbjct: 6 LRADGRTPSQLRPVSITRGWSGTGEGSVLIEFGNTRVLCVASFTEGVPRWKRDSGEGWVT 65
Query: 90 SNIGRLNCNVSYTTFATPVRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
L + V+G+ G ++ S ++ ++L G + + + T+ + VL
Sbjct: 66 GEYSMLPRATEQRSSRESVKGKVGGRTQEISRLIGRSLRGIVDVSALGENTIVLDCDVLR 125
Query: 149 SGGSDLPVVISCASVALADA-------GIM------MYDLVASVSVSCLGKNLLID-PVL 194
+ G I+ A VALADA GI+ + D ++++SV + ++D P +
Sbjct: 126 ADGGTRTAAITGAYVALADAVTWAKEQGILKPSTTVLTDSISAISVGVIDGTPMLDLPYV 185
Query: 195 EEESYQDGSLMIACMPSRY-EVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
E+ Q ++ R+ EV ++ NE + L +A+L + L+
Sbjct: 186 EDVRAQTDMNVVQTGDGRFIEVQGTAEHAPFNRDELNELLDLATLGNARLAAAQKLALE 244
>gi|68535568|ref|YP_250273.1| ribonuclease PH [Corynebacterium jeikeium K411]
gi|68263167|emb|CAI36655.1| ribonuclease PH [Corynebacterium jeikeium K411]
Length = 256
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 105/241 (43%), Gaps = 23/241 (9%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPR---ESKKAM 87
++ R D R + RP G ++ +GS EFGNT+V+ V PR +S +
Sbjct: 15 NFTRADGRATDELRPVRITRGFTSNPAGSVLVEFGNTRVMCTASVEEGVPRFKKDSGEGW 74
Query: 88 MYSNIGRLNCNVSYTTFATPVRGQGSDH-KDFSSMLHKALEGAIILETFPKTTVDVFALV 146
+ + L + ++G+ ++ S ++ +AL A+ L+ + TV++ V
Sbjct: 75 LTAEYAMLPASTHERMPRESMKGKVKGRTQEISRLVGRALRAAVDLKELGENTVNIDCDV 134
Query: 147 LESGGSDLPVVISCASVALADA-----------GIMMYDLVASVSVSCLGKNLLIDPVLE 195
L++ G I+ A VALADA G + VA+VSV + +D E
Sbjct: 135 LQADGGTRTAAITGAYVALADALAVLQARGVVPGQPLRAPVAAVSVGIIDGVPCLDLPYE 194
Query: 196 EESYQDGSLMIACMPSRYEVTQLTVTG---EWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
E+S D + +A M + ++ TG E++ N + L +L + R+ L
Sbjct: 195 EDSRADVDMNVA-MTAEGRFVEIQGTGENAEFTREELNTLLDLAEGGLRELIEAQRAALA 253
Query: 253 E 253
+
Sbjct: 254 Q 254
>gi|418244533|ref|ZP_12870949.1| ribonuclease PH [Corynebacterium glutamicum ATCC 14067]
gi|354511461|gb|EHE84374.1| ribonuclease PH [Corynebacterium glutamicum ATCC 14067]
Length = 245
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 92/213 (43%), Gaps = 30/213 (14%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESKKAMMYSNIG 93
R D R Q R G ++ +GS EFGNT+V+ V + PR + S G
Sbjct: 9 RFDGRAQDQMRAVKITRGFTSNPAGSVLVEFGNTRVMCTASVELGVPRFKRD----SGEG 64
Query: 94 RLNCNVSYTTFATPVRG---------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFA 144
L + AT R +G H + S ++ ++L A+ L + T+ +
Sbjct: 65 WLTAEYAMLPAATAERNRRESMAGKVKGRTH-EISRLIGRSLRAAVDLSQLGENTIAIDC 123
Query: 145 LVLESGGSDLPVVISCASVALADAGIMMYDL-----------VASVSVSCLGKNLLIDPV 193
VL++ G I+ A VALADA ++ + VA+VSV + N+ +D
Sbjct: 124 DVLQADGGTRTASITGAYVALADAIKVLQERGVVPGSPLLAPVAAVSVGLVDGNVCLDLP 183
Query: 194 LEEESYQDGSLMIACMPSRYEVTQLTVTGEWST 226
EE+S D L + M E ++ TGE +T
Sbjct: 184 YEEDSRADVDLNV-VMTEHGEFVEVQGTGEETT 215
>gi|348031007|ref|YP_004873693.1| ribonuclease PH [Glaciecola nitratireducens FR1064]
gi|347948350|gb|AEP31700.1| ribonuclease PH [Glaciecola nitratireducens FR1064]
Length = 237
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 95/237 (40%), Gaps = 23/237 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RP R Q RP A GS EFGNTKV+ + + M G +
Sbjct: 1 MRPSGRTASQIRPVTITRNFTCHAEGSVLIEFGNTKVLCNATVVEGVPRFMKGQGKGWVT 60
Query: 97 CNVSYTTFATPVRG--------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
S AT R QG + ++ ++L A+ L+ + T+ V V++
Sbjct: 61 AEYSMLPRATHTRSDREAARGKQGGRTLEIQRLIARSLRAAVDLKLLGENTITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA-------GIM----MYDLVASVSVSCLGKNLLIDPVLEEE 197
+ G I+ A VAL DA GI+ M ++A+VSV + + D E+
Sbjct: 121 ADGGTRTASITGACVALVDALTWMRAKGILKANPMKHMIAAVSVGIYKGSPIADLEYLED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGE---WSTPHFNEAMQLCLDASAKLGKIMRSCL 251
S D + + M ++ ++ T E +S NE + L D +L +S L
Sbjct: 181 SAADTDMNV-VMTETGKLIEVQGTAEAEPFSLEEMNEMLGLAKDGIMELFDAQKSAL 236
>gi|389623701|ref|XP_003709504.1| exosome complex exonuclease RRP41 [Magnaporthe oryzae 70-15]
gi|351649033|gb|EHA56892.1| exosome complex exonuclease RRP41 [Magnaporthe oryzae 70-15]
Length = 280
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 102/253 (40%), Gaps = 44/253 (17%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R +++ R + +A GS+Y E G+TKV+ V GP E+ G+
Sbjct: 13 LRVDGRRWNELRRCHAQIRTQAAADGSSYLEMGHTKVMCVVTGPSEAAP-------GQRR 65
Query: 97 CNVSYTTFATPVRGQGSDHKD-----------FSSMLHK------------------ALE 127
V+ T AT GQG+ K+ FSS+ K AL
Sbjct: 66 TGVNITATATG-GGQGAQSKEAEVVVSIVVAGFSSVDRKKRGRGDKRIQELQATVSHALS 124
Query: 128 GAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSV----SC 183
+ F +T+ VL GS L +I+ A++A DAGI M D V + S S
Sbjct: 125 ATLHTHLFQHSTITFSLHVLSQDGSLLAALINAATLAAVDAGIPMADYVVACSAGSTSSY 184
Query: 184 LGKNLLIDPVL---EEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDAS 240
+ DP+L ++E + L A + + V L+ + + +D
Sbjct: 185 AAADESADPLLDLNQQEETELPGLTAATLGATDRVVVLSCESRVQASRLEGMLAVAVDGC 244
Query: 241 AKLGKIMRSCLKE 253
++ +I+ +KE
Sbjct: 245 KQVREILDRVVKE 257
>gi|332532804|ref|ZP_08408678.1| ribonuclease PH [Pseudoalteromonas haloplanktis ANT/505]
gi|359435729|ref|ZP_09225910.1| ribonuclease PH [Pseudoalteromonas sp. BSi20652]
gi|359441741|ref|ZP_09231628.1| ribonuclease PH [Pseudoalteromonas sp. BSi20429]
gi|359456485|ref|ZP_09245634.1| ribonuclease PH [Pseudoalteromonas sp. BSi20495]
gi|392536350|ref|ZP_10283487.1| ribonuclease PH [Pseudoalteromonas arctica A 37-1-2]
gi|332037831|gb|EGI74281.1| ribonuclease PH [Pseudoalteromonas haloplanktis ANT/505]
gi|357917620|dbj|GAA62159.1| ribonuclease PH [Pseudoalteromonas sp. BSi20652]
gi|358036409|dbj|GAA67877.1| ribonuclease PH [Pseudoalteromonas sp. BSi20429]
gi|358046473|dbj|GAA81883.1| ribonuclease PH [Pseudoalteromonas sp. BSi20495]
Length = 237
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 58/140 (41%), Gaps = 8/140 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RP R +Q RP F A GS EFGNTKV+ + + M G +N
Sbjct: 1 MRPSERTPNQIRPVTFTRNYTLHAEGSVLVEFGNTKVLCTATVESGVPRFMKGQGKGWIN 60
Query: 97 CNVSYTTFATPVRG--------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
AT R QG + ++ +AL A+ L+ + T+ + V++
Sbjct: 61 AEYGMLPRATHTRNAREAARGKQGGRTMEIQRLIARALRAAVDLKALGENTITIDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA 168
+ G IS A VAL DA
Sbjct: 121 ADGGTRTASISGACVALVDA 140
>gi|113475741|ref|YP_721802.1| ribonuclease PH [Trichodesmium erythraeum IMS101]
gi|110166789|gb|ABG51329.1| RNAse PH [Trichodesmium erythraeum IMS101]
Length = 238
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 94/235 (40%), Gaps = 19/235 (8%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
W RPD R +Q RP F A+ S +FG TKV+ +V K + + G L
Sbjct: 3 WQRPDGRKSNQLRPISFELDYTKFATSSVLTKFGETKVLCNVTIQPGVPKFLADTGQGWL 62
Query: 96 NCNVSYTTFATPVRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
AT R Q K + ++ ++L A+ + + T+ V A VL++
Sbjct: 63 TAEYRMLPAATSERQQREFMKLSGRTQEIQRLIGRSLRAALDMNLLGERTIIVDADVLQA 122
Query: 150 GGSDLPVVISCASVALADAGIMMYD-----------LVASVSVSCLGKNLLIDPVLEEE- 197
V I+ VA+A+A + D VA+VSV L K +D E+
Sbjct: 123 DAGTRTVSITGGFVAVANAISKLIDQGKLERSPILHQVAAVSVGLLEKEPYLDLNYPEDV 182
Query: 198 -SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
+ D ++++ P+ EV G +S N+ + L KL R +
Sbjct: 183 AAEIDFNVVMNDQPALIEVQGTAEIGSFSRTQLNQILDLAEAGIKKLFDAQRQVI 237
>gi|386386174|ref|ZP_10071360.1| ribonuclease PH [Streptomyces tsukubaensis NRRL18488]
gi|385666362|gb|EIF89919.1| ribonuclease PH [Streptomyces tsukubaensis NRRL18488]
Length = 246
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 88/239 (36%), Gaps = 23/239 (9%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R Q RP G A GS FG+TKV+ + + S G +
Sbjct: 3 RIDGRTAEQLRPVTIERGWSKHAEGSVLISFGDTKVLCTASFTEGVPRWRKGSGEGWVTA 62
Query: 98 NVSYTTFATPVRGQ--------GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
S AT RG G + S ++ ++L + + + TV + VL++
Sbjct: 63 EYSMLPRATNTRGDRESVRGRIGGRTHEISRLIGRSLRAVVDTKALGENTVVLDCDVLQA 122
Query: 150 GGSDLPVVISCASVALADAGIM-------------MYDLVASVSVSCLGKNLLIDPVLEE 196
G I+ A VALADA + V +VSV + L+D EE
Sbjct: 123 DGGTRTAAITGAYVALADAVAWAQGKKLIRAGRKPLIGTVGAVSVGIVDGVPLLDLRYEE 182
Query: 197 ESYQDGSLMIACM-PSRYEVTQLTVTGE-WSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
+ D + + C R+ Q T E + N + L A L + R+ L E
Sbjct: 183 DVRADTDMNVVCTGDGRFVEVQGTAEAEPFDRKELNALLDLAAGGCADLAALQRAALDE 241
>gi|452982879|gb|EME82637.1| hypothetical protein MYCFIDRAFT_80273 [Pseudocercospora fijiensis
CIRAD86]
Length = 251
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 6/148 (4%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK--AMMYSNIGR 94
LR D R +++ R + +A GS+Y E GNTK+I +V GPR+ + S
Sbjct: 13 LRVDGRRWNELRRIHGQMSTQAAADGSSYFEMGNTKIICTVLGPRQQTRGGGRDQSRSAS 72
Query: 95 LNCNVSYTTFATPVRGQGS----DHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ + F+ R + S ++ + A I+ +P++T+ + VL
Sbjct: 73 IEVEIGIAGFSGMDRKKRSRTDKRTQEMQYTISSAFASTILTSLYPQSTISIMLHVLSQD 132
Query: 151 GSDLPVVISCASVALADAGIMMYDLVAS 178
G+ L ++ A++AL DAGI M D VA+
Sbjct: 133 GALLAACLNAATLALIDAGIPMKDYVAA 160
>gi|414072712|ref|ZP_11408639.1| ribonuclease PH [Pseudoalteromonas sp. Bsw20308]
gi|410804873|gb|EKS10911.1| ribonuclease PH [Pseudoalteromonas sp. Bsw20308]
Length = 237
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 58/140 (41%), Gaps = 8/140 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RP R +Q RP F A GS EFGNTKV+ + + M G +N
Sbjct: 1 MRPSERTPNQIRPVTFTRNYTLHAEGSVLVEFGNTKVLCTATVESGVPRFMKGQGKGWIN 60
Query: 97 CNVSYTTFATPVRG--------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
AT R QG + ++ +AL A+ L+ + T+ + V++
Sbjct: 61 AEYGMLPRATHTRNAREAARGKQGGRTMEIQRLIARALRAAVDLKALGENTITIDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA 168
+ G IS A VAL DA
Sbjct: 121 ADGGTRTASISGACVALVDA 140
>gi|440783427|ref|ZP_20961145.1| ribonuclease PH [Clostridium pasteurianum DSM 525]
gi|440219567|gb|ELP58779.1| ribonuclease PH [Clostridium pasteurianum DSM 525]
Length = 249
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 96/241 (39%), Gaps = 23/241 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+R D R F Q RP A GS Y E G+TKVI +V + + G +
Sbjct: 1 MRFDGRKFDQIRPVNIVRNYTKYADGSVYIEVGDTKVICNVSIEEKVPLFLRGKGEGWIT 60
Query: 97 CNVSYTTFATPVRGQGSDHK--------DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
C S AT +R K + ++ + L + L+ + T+ V V++
Sbjct: 61 CEYSMLPRATQIRKMRDITKGKIDGRTVEIQRLIGRTLRSVVDLKALGEKTLWVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADAGIMMY-----------DLVASVSVSCLGKNLLIDPVLEEE 197
+ G I+ A +A+ +A ++ +++VSV + L+D EE+
Sbjct: 121 ADGGTRTTAITGAFIAIVEAINKLHKKKDFKIYPIRKYLSAVSVGIVNNEKLLDLCYEED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGE---WSTPHFNEAMQLCLDASAKLGKIMRSCLKEA 254
S + I M + ++ TGE +S NE + L K+ +I + LK
Sbjct: 181 SNAQVDMNI-IMTDDGQFVEIQGTGEQNPFSRKDMNELIDLAEIGVKKMIQIQKRSLKND 239
Query: 255 A 255
A
Sbjct: 240 A 240
>gi|392309031|ref|ZP_10271565.1| ribonuclease PH [Pseudoalteromonas citrea NCIMB 1889]
Length = 237
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 61/140 (43%), Gaps = 8/140 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RP R +Q RP F A G+ EFGNTKV+ V PR K K +
Sbjct: 1 MRPSERTANQIRPVTFTRNYTIHAEGAVLVEFGNTKVLCTATVEAGVPRFMKGQGKGWIT 60
Query: 90 SNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L + RG QG + ++ +AL A+ L+ + T+ + VL+
Sbjct: 61 AEYGMLPRSTHTRNNREAARGKQGGRTMEIQRLIARALRAAVDLKALGENTITIDCDVLQ 120
Query: 149 SGGSDLPVVISCASVALADA 168
+ G IS A VAL DA
Sbjct: 121 ADGGTRTASISGACVALVDA 140
>gi|225021578|ref|ZP_03710770.1| hypothetical protein CORMATOL_01599 [Corynebacterium matruchotii
ATCC 33806]
gi|224945569|gb|EEG26778.1| hypothetical protein CORMATOL_01599 [Corynebacterium matruchotii
ATCC 33806]
Length = 242
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 98/227 (43%), Gaps = 23/227 (10%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
+ R D R Q RP G + +GS E+GNT+V+ + + + S G L
Sbjct: 4 FTRADGRAPDQLRPIRITRGFTTNPAGSVLIEYGNTRVMCTASAEQGVPRFKKDSGEGWL 63
Query: 96 NCNVSYTTFAT-------PVRG--QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALV 146
+ AT +RG +G H + S ++ ++L AI L + T+++ V
Sbjct: 64 TAEYAMLPAATHERMPRESMRGKVKGRTH-EISRLVGRSLRAAIDLTLLGENTINIDCDV 122
Query: 147 LESGGSDLPVVISCASVALADA-----------GIMMYDLVASVSVSCLGKNLLIDPVLE 195
L++ G I+ A +ALADA G + +A+VSV + ++ +D E
Sbjct: 123 LQADGGTRTASITGAYIALADAIAHLTAQGVVPGNPLLPPIAAVSVGIIDGHVCLDLPYE 182
Query: 196 EESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAK 242
E+S D L + M + ++ T E +T E + LD + K
Sbjct: 183 EDSRADVDLNV-IMTQEGKFVEIQGTAEHNT-FSREELNAMLDYAEK 227
>gi|358386690|gb|EHK24285.1| hypothetical protein TRIVIDRAFT_31322 [Trichoderma virens Gv29-8]
Length = 275
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 68/158 (43%), Gaps = 16/158 (10%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMM-------- 88
LR D R ++ R + ++A GS+Y E G+TKV+ V GP E +
Sbjct: 13 LRIDGRRWNDLRRLHAQIHTQDAADGSSYLEMGHTKVMCVVTGPAEPQAGQQKRGTGGGG 72
Query: 89 ----YSNIGRLNCNVSYTTFAT----PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTV 140
+ + NV F++ ++ + KAL + + FP +T+
Sbjct: 73 QAGGQKDGASIVVNVVVAGFSSVDRKRRGRNDRRIQEMEITIQKALAANLHVHLFPHSTI 132
Query: 141 DVFALVLESGGSDLPVVISCASVALADAGIMMYDLVAS 178
V VL GS L +I+ ++AL DAGI M D + +
Sbjct: 133 TVSLHVLSQDGSLLAALINATTLALIDAGIPMTDYITA 170
>gi|307105973|gb|EFN54220.1| hypothetical protein CHLNCDRAFT_36088 [Chlorella variabilis]
Length = 852
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 94/238 (39%), Gaps = 24/238 (10%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIG-- 93
W R D RG RP +V GSA G T+ + +V R ++ M S +G
Sbjct: 448 W-RCDGRGAIDVRPVHCEVDSVPVVHGSALFSRGETQSLCTVTVGRRQEQQKMESLLGGE 506
Query: 94 ---RLNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES- 149
RL N S+ FA G+ S M H L +L P F+L L +
Sbjct: 507 GVKRLFVNYSFPPFAV---GETSTSGMRREMGHSDLAERALLPVIPDMQAFPFSLRLNAE 563
Query: 150 ----GGSDLPVVISCASVALADAGIMMYDLVASVSVSCL------GKNLLIDPVL--EEE 197
GS + ++ALADAG+ + LVA V+V L G+ L+ V E+
Sbjct: 564 TLASAGSSSMAAVCGGALALADAGVPLKALVAGVTVGLLTESSWGGELRLLSSVALGMED 623
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPH--FNEAMQLCLDASAKLGKIMRSCLKE 253
D L +A QL V + P NEA+ L AKL IM L E
Sbjct: 624 QLGDMDLKVAGTSQGITACQLDVKLQGGVPLEILNEAIGLAARGRAKLLGIMEKALPE 681
>gi|334563352|ref|ZP_08516343.1| ribonuclease PH [Corynebacterium bovis DSM 20582]
Length = 276
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 92/208 (44%), Gaps = 22/208 (10%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGP---RESKKAMMYS 90
R D R + RP G ++ +GS EFG+TKV+ V V P R+S + + +
Sbjct: 19 RADGRATDELRPVRITRGFTDNPAGSVLVEFGSTKVMCTASVEVGVPRFKRDSGEGWLTA 78
Query: 91 NIGRLNCNVSYTTFATPVRG--QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
L + +RG +G H + S ++ +AL A+ L + TV V VL+
Sbjct: 79 EYSMLPGSTHERMPRESMRGKVKGRTH-EISRLVGRALRAAVDLRELGENTVMVDCDVLQ 137
Query: 149 SGGSDLPVVISCASVALADA-----------GIMMYDLVASVSVSCLGKNLLIDPVLEEE 197
+ G I+ A VALADA G + + VA+VSV + +D EE+
Sbjct: 138 ADGGTRTAAITGAYVALADALDVLAERGVVPGTPLREPVAAVSVGVIDGVPCLDLPYEED 197
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWS 225
S D + + M + ++ TGE +
Sbjct: 198 SRADVDMNV-VMTAAGRFVEIQGTGEHA 224
>gi|289549062|ref|YP_003474050.1| ribonuclease PH [Thermocrinis albus DSM 14484]
gi|289182679|gb|ADC89923.1| ribonuclease PH [Thermocrinis albus DSM 14484]
Length = 255
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 95/235 (40%), Gaps = 23/235 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+R D R ++ R + GS EFG+TKV+ +V + G +
Sbjct: 1 MRSDGRKPNELRKIRITRDYLKHPEGSVLVEFGDTKVVCTVSVQESVPPFLKGKGQGWIT 60
Query: 97 CNVSYTTFATPVRG--------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
S AT R G + M+ +A+ A+ L + T + VL+
Sbjct: 61 AEYSMLPRATQTRNIRESVQGRVGGRTHEIQRMIGRAMRTALDLTKVGERTFWIDCDVLQ 120
Query: 149 SGGSDLPVVISCASVALADAGIMMY-----------DLVASVSVSCLGKNLLIDPVLEEE 197
+ G I+ A VALADA I +Y D VA+VSV + +L+D EE+
Sbjct: 121 ADGGTRTAAITGAFVALADAVIKLYTEGVLTTTPIKDFVAAVSVGIVDDQILLDLNFEED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGE---WSTPHFNEAMQLCLDASAKLGKIMRS 249
S + + S ++++ GE +S ++ + L L +L ++ RS
Sbjct: 181 SRAKVDMNVVATGSGM-ISEIHAMGEEHTFSREDMDKMLNLALAGIRQLVELQRS 234
>gi|326385028|ref|ZP_08206700.1| ribonuclease PH [Gordonia neofelifaecis NRRL B-59395]
gi|326196242|gb|EGD53444.1| ribonuclease PH [Gordonia neofelifaecis NRRL B-59395]
Length = 252
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 78/181 (43%), Gaps = 20/181 (11%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R + RP F G + +GS EFGNT+V+ + S +G L
Sbjct: 4 RADGRADDELRPIKFTRGFTSHPAGSVLVEFGNTRVMCTASVTEGVPSWRRGSGLGWLTA 63
Query: 98 NVSYTTFAT-------PVRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
S AT VRG+ G + S ++ ++L I L + T+ + VL++
Sbjct: 64 EYSMLPAATHERSKRESVRGKIGGRTHEISRLIGRSLRACIDLAALGENTIAIDCDVLQA 123
Query: 150 GGSDLPVVISCASVALAD------AGIMMYD------LVASVSVSCLGKNLLIDPVLEEE 197
G I+ A VALAD AG + D ++A+VSV + + +D EE+
Sbjct: 124 DGGTRTAAITGAYVALADAVTYLGAGGKLADPQPLSCIIAAVSVGVVDGRVRLDLPYEED 183
Query: 198 S 198
S
Sbjct: 184 S 184
>gi|305681138|ref|ZP_07403945.1| tRNA nucleotidyltransferase [Corynebacterium matruchotii ATCC
14266]
gi|305659343|gb|EFM48843.1| tRNA nucleotidyltransferase [Corynebacterium matruchotii ATCC
14266]
Length = 242
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 99/227 (43%), Gaps = 23/227 (10%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
+ R D R Q RP G + +GS E+GNT+V+ + + + S G L
Sbjct: 4 FTRADGRAPDQLRPIRITRGFTTNPAGSVLIEYGNTRVMCTASAEQGVPRFKKDSGEGWL 63
Query: 96 NCNVSYTTFAT-------PVRG--QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALV 146
+ AT +RG +G H + S ++ ++L AI L + T+++ V
Sbjct: 64 TAEYAMLPAATHERMPRESMRGKVKGRTH-EISRLVGRSLRAAIDLTLLGENTINIDCDV 122
Query: 147 LESGGSDLPVVISCASVALADA-----------GIMMYDLVASVSVSCLGKNLLIDPVLE 195
L++ G I+ A +ALADA G + +A+VSV + ++ +D E
Sbjct: 123 LQADGGTRTASITGAYIALADAIAYLTAQGVVPGNPLLPPIAAVSVGIIDGHVCLDLPYE 182
Query: 196 EESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAK 242
E+S D L + M + ++ T E +T +E + LD + K
Sbjct: 183 EDSRADVDLNV-IMTQEGKFVEIQGTAEHNTFSRDE-LNAMLDYAEK 227
>gi|428308090|ref|YP_007144915.1| RNAse PH [Crinalium epipsammum PCC 9333]
gi|428249625|gb|AFZ15405.1| RNAse PH [Crinalium epipsammum PCC 9333]
Length = 239
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 96/235 (40%), Gaps = 19/235 (8%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
W RPD R + Q RP F ++ S G+T+V+ SV K + S G L
Sbjct: 3 WQRPDHRQYDQLRPISFEKEFTRFSTSSVLTRCGDTQVLCSVTIQNTIPKFLQGSGKGWL 62
Query: 96 NCNVSYTTFATPVRGQ------GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
ATP R + ++ ++ ++L AI L+ + T+ V A VL++
Sbjct: 63 TAEYRMLPSATPQRQEREFMKLAGRTQEIQRLIGRSLRAAIDLQALGERTIIVDADVLQA 122
Query: 150 GGSDLPVVISCASVALADA---GIMMYDL--------VASVSVSCLGKNLLIDPVLEEE- 197
I+ VALADA + DL VA++SV L + +D E+
Sbjct: 123 DAGTRTTSITGGFVALADALNKLVKQGDLERSPIIHQVAAISVGLLHGSPFLDLNYPEDV 182
Query: 198 -SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
+ D ++++ S E+ G ++ N+ M L +L ++ R L
Sbjct: 183 AAEVDFNVVMNEELSAIEIQGTAEDGTFTRTQLNQIMDLSEKGIKELLELQRQAL 237
>gi|383934703|ref|ZP_09988143.1| ribonuclease PH [Rheinheimera nanhaiensis E407-8]
gi|383704238|dbj|GAB58234.1| ribonuclease PH [Rheinheimera nanhaiensis E407-8]
Length = 237
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 97/228 (42%), Gaps = 25/228 (10%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVS---VFG-PRESK---KAMMY 89
+RP R Q RP F A GS EFGNTKVI + + G PR K K +
Sbjct: 1 MRPSGRTASQIRPLTFTRQFTAHAEGSVLVEFGNTKVICTASVIEGVPRFMKGQGKGWVT 60
Query: 90 SNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L RG QG + ++ +AL A+ L+ + T+ + V++
Sbjct: 61 AEYGMLPRATHTRNDREAARGKQGGRTMEIQRLIGRALRTAVDLKLLGENTITIDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA-------GIMMYD----LVASVSVSCLGKNLLIDPVLEEE 197
+ G I+ A VAL DA G++ + +VA+VSV + D E+
Sbjct: 121 ADGGTRTASITGACVALVDALNFMRAKGMIKTNPLNFMVAAVSVGIYKGTAVADLDYAED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGK 245
S + + I M +V ++ T E + F E MQ LD LGK
Sbjct: 181 SNAETDMNI-VMTETGKVIEIQGTAEEAPFSFEE-MQQMLD----LGK 222
>gi|311277436|ref|YP_003939667.1| ribonuclease PH [Enterobacter cloacae SCF1]
gi|308746631|gb|ADO46383.1| ribonuclease PH [Enterobacter cloacae SCF1]
Length = 238
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 74/181 (40%), Gaps = 19/181 (10%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RP R HQ RP A GS EFG+TKV+ + + + G +
Sbjct: 1 MRPAGRSAHQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIEEGVPRFLKGQGQGWIT 60
Query: 97 CNVSYTTFATPVRG--------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
AT R QG + ++ +AL A+ L+T + T+ + V++
Sbjct: 61 AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALAD-------AGIM----MYDLVASVSVSCLGKNLLIDPVLEEE 197
+ G I+ A VALAD AG + M +VA+VSV + L D E+
Sbjct: 121 ADGGTRTASITGACVALADALNNLVAAGKLKTNPMKGMVAAVSVGIVDGEALCDLEYVED 180
Query: 198 S 198
S
Sbjct: 181 S 181
>gi|434392384|ref|YP_007127331.1| Ribonuclease PH [Gloeocapsa sp. PCC 7428]
gi|428264225|gb|AFZ30171.1| Ribonuclease PH [Gloeocapsa sp. PCC 7428]
Length = 244
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 95/235 (40%), Gaps = 19/235 (8%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
W RPD R HQ RP F G A+ S A+ G+T+V+ +V + + S G L
Sbjct: 7 WQRPDHRQSHQMRPHSFELGFTRFAAASVLAKCGDTQVLCNVSIQPGVPRFLTDSGRGWL 66
Query: 96 NCNVSYTTFATPVRGQ------GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
ATP R + ++ ++ ++L A+ E + TV V A VL++
Sbjct: 67 TAEYRMLPGATPQRQEREFMRLSGRTQEIQRLIGRSLRAALDFEALGERTVMVDADVLQA 126
Query: 150 GGSDLPVVISCASVALADA-------GIM----MYDLVASVSVSCLGKNLLIDPVLEEE- 197
IS VALA A G++ + VA+VSV L +D E+
Sbjct: 127 DAGTRTTAISGGFVALAHAMDKLLQQGVLTRSPIVHQVAAVSVGLLQGEPFLDLNYVEDV 186
Query: 198 -SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
+ D ++++ EV +G +S N+ M +L + R L
Sbjct: 187 AAEVDFNVVMNEHLGIIEVQGTAESGTFSRNQMNQIMDFAQKGIQELLEAQRQAL 241
>gi|195443592|ref|XP_002069486.1| GK11547 [Drosophila willistoni]
gi|194165571|gb|EDW80472.1| GK11547 [Drosophila willistoni]
Length = 237
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 78/188 (41%), Gaps = 6/188 (3%)
Query: 62 GSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSSM 121
GS G+T VI +V GP E K + + L CN V+ + S+
Sbjct: 31 GSVMYSQGSTVVIAAVLGPVEVKTQSLSIDGSYLECNYRPKAGLPQVK-----ERIRESV 85
Query: 122 LHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGI-MMYDLVASVS 180
+ LE A++ E++P++ + V LE GS ++ A +A+ G+ M Y A
Sbjct: 86 IQDVLELAVLGESYPRSKMSVQIQELEDRGSIDACAVNAACLAMIIGGLPMKYSFAAVQC 145
Query: 181 VSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDAS 240
+ ++DP E +Q S A ++ + G + FN+ LC AS
Sbjct: 146 IINEDGEYILDPDQRETLHQRASFTFAFDSLEGDLLLVQTKGSFKIAQFNDIECLCRSAS 205
Query: 241 AKLGKIMR 248
A + + R
Sbjct: 206 ANIFQFYR 213
>gi|84998004|ref|XP_953723.1| 3' exonuclease, exosome component [Theileria annulata]
gi|65304720|emb|CAI73045.1| 3' exonuclease, exosome component, putative [Theileria annulata]
Length = 254
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 102/232 (43%), Gaps = 28/232 (12%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIG 93
D L DS F++ RP + ++ SGS GNT V P+ S KKA
Sbjct: 6 DILMSDS--FNELRPLEIKMSTSSTFSGSCIINLGNTIAKCLVNLPKISTKKASTEYGQF 63
Query: 94 RLNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSD 153
L +Y F TP + S + + E I+L+ +P ++ + +V G
Sbjct: 64 TLELTSNYL-FHTPKYLET-----LKSHIIETFERHILLQNYPSQIIEAYIIVSNDDGGL 117
Query: 154 LPVVISCASVALADAGIMMYDLVASVSVSCLGK----NLL--IDPVLEEESY---QDGSL 204
LP +I +AL D GI +YD++++ SV C+ K NL+ +D E SY +D
Sbjct: 118 LPALIMGMCLALIDCGIQVYDVISACSV-CIFKDHDGNLVTGLDFNKTELSYYQSKDPYF 176
Query: 205 MIA----CMPSRYEVTQLTVTGEWSTPHFNEAMQL----CLDASAKLGKIMR 248
+ C R V L G +S H +A+++ C S +L KI++
Sbjct: 177 TVVNLGYCCNLR-NVAFLESKGNYSAEHIGKALEVAEVACNLISGELFKILK 227
>gi|321475274|gb|EFX86237.1| hypothetical protein DAPPUDRAFT_193332 [Daphnia pulex]
Length = 218
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 92/207 (44%), Gaps = 11/207 (5%)
Query: 56 AVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQ-GSD 114
++ A GS GNT V+ SV+GP E+K S+ R+ ++Y P G G
Sbjct: 17 VLSRADGSVMFSQGNTVVMASVYGPLEAKIQKELSD--RMYIELNYK----PKTGMPGVA 70
Query: 115 HKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYD 174
+ ++ I+ P+T V + ++ GG+ L I+ +AL D+G+ +
Sbjct: 71 ERGKEKLIKTTCNHIILTNLHPRTAVCITVQEMQDGGTLLAASINAVCLALLDSGLPLQC 130
Query: 175 LVASVSVSCLGKN-LLIDPVLE--EESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNE 231
LVA+V+ K+ +++DP + +E Y+ A +Y + G+ F +
Sbjct: 131 LVAAVTCLVDKKDRIILDPCISTVKEGYK-AMFTFAFDSQKYNLILSHCEGQVPYQLFQK 189
Query: 232 AMQLCLDASAKLGKIMRSCLKEAASDE 258
AM LC AS + R + S+E
Sbjct: 190 AMVLCQKASHVIFDFYRQAVLRKFSNE 216
>gi|227504000|ref|ZP_03934049.1| ribonuclease PH [Corynebacterium striatum ATCC 6940]
gi|227199394|gb|EEI79442.1| ribonuclease PH [Corynebacterium striatum ATCC 6940]
Length = 245
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 90/213 (42%), Gaps = 30/213 (14%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV---FG-PRESKKAMMYS 90
D+ R D R Q R + +GS EFGNT+V+ + FG PR K S
Sbjct: 6 DFSRADGRALDQMRSVRITRNFTTNPAGSVLVEFGNTRVMCTASVEFGVPRFKKD----S 61
Query: 91 NIGRLNCNVSYTTFATPVRG---------QGSDHKDFSSMLHKALEGAIILETFPKTTVD 141
G L S AT R +G H + S ++ ++L A+ L + T+
Sbjct: 62 GEGWLTAEYSMLPAATHDRMPRESMKGKVKGRTH-EISRLVGRSLRAAVDLSELGENTIQ 120
Query: 142 VFALVLESGGSDLPVVISCASVALADA-----------GIMMYDLVASVSVSCLGKNLLI 190
+ VL++ G I+ A VALADA G + D VA+VSV + + +
Sbjct: 121 LDCDVLQADGGTRTASITGAYVALADAIEYLKSEGVVPGEPLLDPVAAVSVGIIDGQICL 180
Query: 191 DPVLEEESYQDGSLMIACMPSRYEVTQLTVTGE 223
D EE+S + L + M + ++ TGE
Sbjct: 181 DLPYEEDSRAEVDLNV-VMQEGGDFVEIQGTGE 212
>gi|59710718|ref|YP_203494.1| ribonuclease PH [Vibrio fischeri ES114]
gi|75431903|sp|Q5E8P0.1|RNPH_VIBF1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|59478819|gb|AAW84606.1| ribonuclease PH [Vibrio fischeri ES114]
Length = 238
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 74/192 (38%), Gaps = 19/192 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RP R Q RP A GS EFGNTKVI + + + G +
Sbjct: 1 MRPSGRTAQQVRPITLTRNFTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGKGKGWVT 60
Query: 97 CNVSYTTFATPVRG--------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
AT R QG + ++ ++L A+ LE + + V V++
Sbjct: 61 AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAAVDLEALGEQMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA-------GIM----MYDLVASVSVSCLGKNLLIDPVLEEE 197
+ G I+ ASVALADA G + M VA+VSV + D E+
Sbjct: 121 ADGGTRTASITGASVALADAINHMIATGKLKSNPMKGHVAAVSVGIYNGEAICDLEYVED 180
Query: 198 SYQDGSLMIACM 209
S D + + M
Sbjct: 181 SAADTDMNVVMM 192
>gi|260906180|ref|ZP_05914502.1| ribonuclease PH [Brevibacterium linens BL2]
Length = 240
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 98/227 (43%), Gaps = 23/227 (10%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+R D R + R +N+A GSA EFGNT+V+V+ + + G +
Sbjct: 1 MRADGRNADELREVTITRNWINTAEGSALVEFGNTRVLVAASLTAGVPRWLKGQGRGWVT 60
Query: 97 CNVSYTTFAT-------PVRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ AT V+G+ G + S ++ ++L I L+ + T+ + VL+
Sbjct: 61 AEYAMLPRATDSRNTRESVKGKLGGRTHEISRLIGRSLRAVIDLDKLGENTLVLDCDVLQ 120
Query: 149 SGGSDLPVVISCASVALADA-------GIM------MYDLVASVSVSCLGKNLLIDPVLE 195
+ G I+ A VALADA GI+ + D +A++SV + ++D
Sbjct: 121 ADGGTRTASITGAYVALADAIDKGRSTGIIPAANNPIKDSIAAISVGIIDGEPVLDLPYV 180
Query: 196 EESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAK 242
E+S D + + M + ++ T E P + + LD +AK
Sbjct: 181 EDSRADTDMNV-VMTGSGQFVEVQGTAE-GAPFDRDELGTLLDLAAK 225
>gi|392546678|ref|ZP_10293815.1| ribonuclease PH [Pseudoalteromonas rubra ATCC 29570]
Length = 237
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 60/140 (42%), Gaps = 8/140 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RP R +Q RP F A GS EFGNTKV+ V PR K K +
Sbjct: 1 MRPSERTANQIRPVTFTRNYTMHAEGSVLVEFGNTKVLCTATVEAGVPRFMKGQGKGWIT 60
Query: 90 SNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L + +G QG + ++ +AL A+ L + T+ + VL+
Sbjct: 61 AEYGMLPRSTHTRNGREAAKGKQGGRTMEIQRLIARALRAAVDLSALGENTITIDCDVLQ 120
Query: 149 SGGSDLPVVISCASVALADA 168
+ G IS A VAL DA
Sbjct: 121 ADGGTRTASISGACVALVDA 140
>gi|390361681|ref|XP_789674.3| PREDICTED: exosome complex component MTR3-like [Strongylocentrotus
purpuratus]
Length = 132
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 7/100 (7%)
Query: 158 ISCASVALADAGIMMYDLVASVSVSCLGKNLLIDP-----VLEEESYQDGSLMIAC--MP 210
I+CAS+A+A+AGI MYDLV S+ G+ LL+DP E ES D ++ +P
Sbjct: 11 ITCASIAVANAGIEMYDLVIGSSLRQTGETLLLDPTAFDETAESESTDDTQAIVTVGFLP 70
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSC 250
S +V+ G+ +A+Q C+D + +++ C
Sbjct: 71 SLKQVSCSVQQGQLQCEDSIKALQQCIDVCERYYQVVYEC 110
>gi|443688633|gb|ELT91268.1| hypothetical protein CAPTEDRAFT_224286 [Capitella teleta]
Length = 176
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 143 FALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLID-PVLEEESYQD 201
F VL+S G + ++ A++AL DAGI M D V + S S + L+D LEE S +
Sbjct: 52 FHHVLQSDGGNYCCSVNAATLALIDAGIPMKDYVCACSASFIKDTALLDINYLEESSGRS 111
Query: 202 GSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAASD 257
L++A +P +V L + G H N+ + + + I+ + ++E ++
Sbjct: 112 AELVVATLPKWDQVVLLEMDGRLHEDHLNKVLDTAVKGCKDVYAILDAAVREHVTE 167
>gi|227833921|ref|YP_002835628.1| ribonuclease PH [Corynebacterium aurimucosum ATCC 700975]
gi|262184924|ref|ZP_06044345.1| ribonuclease PH [Corynebacterium aurimucosum ATCC 700975]
gi|227454937|gb|ACP33690.1| ribonuclease PH [Corynebacterium aurimucosum ATCC 700975]
Length = 242
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 102/244 (41%), Gaps = 33/244 (13%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV---FG-PRESKKAMMYS 90
D+ R D R Q R + +GS EFGNT+V+ + FG PR K S
Sbjct: 3 DFTRADGRALDQLRSVRITRNFTTNPAGSVLVEFGNTRVMCTASVEFGVPRFKKD----S 58
Query: 91 NIGRLNCNVSYTTFATPVRG---------QGSDHKDFSSMLHKALEGAIILETFPKTTVD 141
G L + AT R +G H + S ++ ++L A+ L + T+
Sbjct: 59 GEGWLTAEYAMLPSATHERMPRESMKGKVKGRTH-EISRLVGRSLRAAVDLSELGENTIQ 117
Query: 142 VFALVLESGGSDLPVVISCASVALADA-----------GIMMYDLVASVSVSCLGKNLLI 190
+ VL++ G I+ A VALADA G + D +A+VSV + ++ +
Sbjct: 118 LDCDVLQADGGTRTASITGAYVALADAIAYLKEEGVVPGEPLLDPIAAVSVGIIDGHVCL 177
Query: 191 DPVLEEESYQDGSLMIACMPSRYEVTQLTVTGE---WSTPHFNEAMQLCLDASAKLGKIM 247
D EE+S + L + M + ++ TGE + N+ + + A+L
Sbjct: 178 DLPYEEDSRAEVDLNV-VMQEGGDFVEIQGTGEHGLFGRAELNDMLDVAQAGCAQLIDAQ 236
Query: 248 RSCL 251
++ L
Sbjct: 237 KAAL 240
>gi|302404108|ref|XP_002999892.1| exosome complex exonuclease RRP41 [Verticillium albo-atrum
VaMs.102]
gi|261361394|gb|EEY23822.1| exosome complex exonuclease RRP41 [Verticillium albo-atrum
VaMs.102]
Length = 155
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 7/140 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK---AMMYSNIG 93
LR D R +++ R + ++A GS+Y E G+TKV+ V GP E ++ A S
Sbjct: 13 LRVDGRRWNELRRLQAQIRTQDAADGSSYLEIGHTKVMCVVTGPTEPQRRGPAGGQSKDA 72
Query: 94 RLNCNVSYTTFATPVRGQ-GSDHKDFSSM---LHKALEGAIILETFPKTTVDVFALVLES 149
+N ++ F++ R + G + K S + + KA + FP +++ + VL
Sbjct: 73 AVNVSIVVAGFSSVDRRKYGRNDKRISELEATVSKAFASTLHTHLFPHSSIYISLHVLSQ 132
Query: 150 GGSDLPVVISCASVALADAG 169
GS L +++ ++AL DAG
Sbjct: 133 DGSLLAALLNATTLALVDAG 152
>gi|197333899|ref|YP_002154880.1| ribonuclease PH [Vibrio fischeri MJ11]
gi|423684847|ref|ZP_17659655.1| ribonuclease PH [Vibrio fischeri SR5]
gi|226736949|sp|B5FFE2.1|RNPH_VIBFM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|197315389|gb|ACH64836.1| ribonuclease PH [Vibrio fischeri MJ11]
gi|371495894|gb|EHN71488.1| ribonuclease PH [Vibrio fischeri SR5]
Length = 238
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 74/192 (38%), Gaps = 19/192 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RP R Q RP A GS EFGNTKVI + + + G +
Sbjct: 1 MRPSGRTAQQVRPITLTRNFTAHAEGSVLVEFGNTKVICTASVEENVPRWLKGKGKGWVT 60
Query: 97 CNVSYTTFATPVRG--------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
AT R QG + ++ ++L A+ LE + + V V++
Sbjct: 61 AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAAVDLEALGEQMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA-------GIM----MYDLVASVSVSCLGKNLLIDPVLEEE 197
+ G I+ ASVALADA G + M VA+VSV + D E+
Sbjct: 121 ADGGTRTASITGASVALADAINHMIATGKLKSNPMKGHVAAVSVGIYNGEAICDLEYLED 180
Query: 198 SYQDGSLMIACM 209
S D + + M
Sbjct: 181 SAADTDMNVVMM 192
>gi|112419436|gb|AAI22388.1| Exosome component 5 [Danio rerio]
gi|182891334|gb|AAI64315.1| Exosc5 protein [Danio rerio]
Length = 218
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 85/199 (42%), Gaps = 6/199 (3%)
Query: 62 GSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSSM 121
GS+ G+T ++ V+GP E K + + + + VR + +
Sbjct: 25 GSSTFVQGDTSILAGVYGPAEVKVSKEIYDRATVEVLIQPKMGLPSVRERAREQ-----C 79
Query: 122 LHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSV 181
+ + E A++L P++++ V V+ GS L ++ A +AL DAG+ M L SV+
Sbjct: 80 VRETCEAALLLTLHPRSSLTVILQVVHDDGSLLSCCLNAACMALMDAGLPMSRLFCSVTC 139
Query: 182 SCLGKNLLI-DPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDAS 240
+ + +I DP +E L A + V + TG +S + + + AS
Sbjct: 140 AISKEGQIITDPTARQEKVSRALLTFAIDSNERNVLMSSTTGSFSVQELQQCIAISQKAS 199
Query: 241 AKLGKIMRSCLKEAASDEQ 259
++ + R +K S Q
Sbjct: 200 EQIFQFYRDSVKRRYSKMQ 218
>gi|86609199|ref|YP_477961.1| ribonuclease PH [Synechococcus sp. JA-2-3B'a(2-13)]
gi|123502063|sp|Q2JKT3.1|RNPH_SYNJB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|86557741|gb|ABD02698.1| ribonuclease PH [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 244
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 93/242 (38%), Gaps = 24/242 (9%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIG 93
+ W RPD+R Q RP F A GS +FG+T V+ + E + + G
Sbjct: 1 MSWQRPDNRTAAQLRPVSFERHFTRYAPGSVLVKFGHTHVLCTASVAEEVPPFLQNTGQG 60
Query: 94 RLNCNVSYTTFATPVRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVL 147
L AT R K + ++ ++L A+ T+ V A VL
Sbjct: 61 WLTAEYRMLPGATQQRQPREMLKLSGRTAEIQRLIGRSLRAALDFRKLGSRTITVDADVL 120
Query: 148 ESGGSDLPVVISCASVALADAGIMMY--------------DLVASVSVSCLGKNLLIDPV 193
++ G I+ VAL DA +Y VA++SV + +L+D
Sbjct: 121 QADGGTRTAAITGGYVALHDAITWLYKQGALDPAQGSPLRQQVAALSVGIVQGEVLVDLC 180
Query: 194 LEEESYQDGSLMIACMPSRYEVTQLTVTGE---WSTPHFNEAMQLCLDASAKLGKIMRSC 250
EE+S + + I M + ++ T E +S P + +++ +L + R
Sbjct: 181 YEEDSQAEVDMNI-VMNEQGSFIEIQGTAEAACFSRPQLLQMLEMAQAGIQELLQAQRQA 239
Query: 251 LK 252
L
Sbjct: 240 LN 241
>gi|354544990|emb|CCE41715.1| hypothetical protein CPAR2_802650 [Candida parapsilosis]
Length = 300
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 45/180 (25%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI-VSVFGPRESKKAMMYSNIGRLN 96
P + +Q P F + G + +++GSAY E NT +I VSVFGPR + + I + +
Sbjct: 33 EPATASSNQVPPFFLKHGLITNSNGSAYLEIDNTTIIQVSVFGPRPIRGSF----IDKAS 88
Query: 97 CNVSYTTFATPVRGQGSD-----------------------------HKDFSSMLHKALE 127
+V T F V+ +D H+ FSS L L
Sbjct: 89 ISVE-TKFLPHVQQPQADIFNFNNSSSNNNRDTFNASGYRTGMTAIEHR-FSSYLETCLL 146
Query: 128 GAIILETFPKTTVDVFALVLES-----GGSD----LPVVISCASVALADAGIMMYDLVAS 178
+I+L +PK+T+D+ ++ + G S + ++ +S+A+ DAGI + D+V+S
Sbjct: 147 PSILLSKYPKSTIDLQVSIISTDPNCKGLSGMLWLMQWIVVASSLAIIDAGIEIRDMVSS 206
>gi|452974422|gb|EME74242.1| polynucleotide phosphorylase/polyadenylase [Bacillus sonorensis
L12]
Length = 705
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 101/242 (41%), Gaps = 25/242 (10%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKV-------------IVSVFGPR 81
+ +RPD RG + RP G + GS G T+ I+ G
Sbjct: 313 EKVRPDGRGVDEIRPLSSEVGLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGVE 372
Query: 82 ESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILET-FPKTTV 140
ESK+ M + N + + + P+RG G ++ +ALE I E FP T+
Sbjct: 373 ESKRFMHHYNFPQFSVGET-----GPMRGPGRREIGHGALGERALEPVIPSEKDFP-YTI 426
Query: 141 DVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCL--GKN--LLIDPVLEE 196
+ + VLES GS I +++A+ DAG+ + VA +++ + G N +L D E
Sbjct: 427 RLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGDNYTVLTDIQGME 486
Query: 197 ESYQDGSLMIACMPSRYEVTQLTV-TGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAA 255
++ D +A Q+ + S +EA+Q ++ K M S L E+
Sbjct: 487 DALGDMDFKVAGTAKGVTALQMDIKISGLSREILDEALQQAQKGRMEILKSMLSTLAESR 546
Query: 256 SD 257
+
Sbjct: 547 KE 548
>gi|440469501|gb|ELQ38610.1| exosome complex exonuclease RRP41 [Magnaporthe oryzae Y34]
gi|440482243|gb|ELQ62753.1| exosome complex exonuclease RRP41 [Magnaporthe oryzae P131]
Length = 280
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 102/253 (40%), Gaps = 44/253 (17%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R +++ R + +A GS+Y E G+TKV+ V GP E+ G+
Sbjct: 13 LRVDGRRWNELRRCHAQIRTQAAADGSSYLEMGHTKVMCVVTGPSEAAP-------GQRR 65
Query: 97 CNVSYTTFATPVRGQGSDHKD-----------FSSMLHK------------------ALE 127
V+ T AT GQG+ ++ FSS+ K AL
Sbjct: 66 TGVNITATATG-GGQGAQSREAEVVVSIVVAGFSSVDRKKRGRGDKRIQELQATVSHALS 124
Query: 128 GAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSV----SC 183
+ F +T+ VL GS L +I+ A++A DAGI M D V + S S
Sbjct: 125 ATLHTHLFQHSTITFSLHVLSQDGSLLAALINAATLAAVDAGIPMADYVVACSAGSTSSY 184
Query: 184 LGKNLLIDPVL---EEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDAS 240
+ DP+L ++E + L A + + V L+ + + +D
Sbjct: 185 AAADESADPLLDLNQQEETELPGLTAATLGATDRVVVLSCESRVQASRLEGMLAVAVDGC 244
Query: 241 AKLGKIMRSCLKE 253
++ +I+ +KE
Sbjct: 245 KQVREILDRVVKE 257
>gi|405110138|emb|CCM09438.1| cds17 [Streptomyces bottropensis]
gi|456384972|gb|EMF50550.1| ribonuclease [Streptomyces bottropensis ATCC 25435]
Length = 245
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 89/237 (37%), Gaps = 23/237 (9%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R Q RP G A GS FG+TKV + + S G +
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLVSFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62
Query: 98 NVSYTTFATPVRGQ--------GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
S AT RG G + S ++ ++L I + + T+ + VL++
Sbjct: 63 EYSMLPRATNTRGDRESVRGRIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122
Query: 150 GGSDLPVVISCASVALADAGIM-------------MYDLVASVSVSCLGKNLLIDPVLEE 196
G I+ A VALADA + V++VSV +G L+D EE
Sbjct: 123 DGGTRTAAITGAYVALADAVSWAQGRKLVKAGRQPLTGTVSAVSVGIVGGVPLLDLRYEE 182
Query: 197 ESYQDGSLMIACM-PSRYEVTQLTVTGE-WSTPHFNEAMQLCLDASAKLGKIMRSCL 251
+ D + + C R+ Q T E ++ N + L + +L + R L
Sbjct: 183 DVKADTDMNVVCTGDGRFVEVQGTAEAEPFAREELNSLLDLAVSGCTELALLQRKAL 239
>gi|290960058|ref|YP_003491240.1| ribonuclease [Streptomyces scabiei 87.22]
gi|260649584|emb|CBG72699.1| putative ribonuclease [Streptomyces scabiei 87.22]
Length = 245
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 89/237 (37%), Gaps = 23/237 (9%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R Q RP G A GS FG+TKV + + S G +
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLVSFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62
Query: 98 NVSYTTFATPVRGQ--------GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
S AT RG G + S ++ ++L I + + T+ + VL++
Sbjct: 63 EYSMLPRATNTRGDRESVRGRIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122
Query: 150 GGSDLPVVISCASVALADAGIM-------------MYDLVASVSVSCLGKNLLIDPVLEE 196
G I+ A VALADA + V++VSV +G L+D EE
Sbjct: 123 DGGTRTAAITGAYVALADAVSWAQGRKLIKAGRQPLTGTVSAVSVGIVGGVPLLDLRYEE 182
Query: 197 ESYQDGSLMIACM-PSRYEVTQLTVTGE-WSTPHFNEAMQLCLDASAKLGKIMRSCL 251
+ D + + C R+ Q T E ++ N + L + +L + R L
Sbjct: 183 DVKADTDMNVVCTGDGRFVEVQGTAEAEPFAREELNSLLDLAVSGCTELALLQRKAL 239
>gi|409178641|gb|AFV25476.1| hypothetical protein [Streptomyces sp. BC16019]
Length = 245
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 89/237 (37%), Gaps = 23/237 (9%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R Q RP G A GS FG+TKV + + S G +
Sbjct: 3 RIDGRTPEQLRPITIERGWSKHAEGSVLVSFGDTKVFCTASVTEGVPRWRKGSGEGWVTA 62
Query: 98 NVSYTTFATPVRGQ--------GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
S AT RG G + S ++ ++L I + + T+ + VL++
Sbjct: 63 EYSMLPRATNTRGDRESVRGRIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122
Query: 150 GGSDLPVVISCASVALADAGIM-------------MYDLVASVSVSCLGKNLLIDPVLEE 196
G I+ A VALADA + V++VSV +G L+D EE
Sbjct: 123 DGGTRTAAITGAYVALADAVSWAQGKKLIKAGRQPLTGTVSAVSVGIVGGVPLLDLCYEE 182
Query: 197 ESYQDGSLMIACM-PSRYEVTQLTVTGE-WSTPHFNEAMQLCLDASAKLGKIMRSCL 251
+ D + + C R+ Q T E ++ N + L + +L + R L
Sbjct: 183 DVKADTDMNVVCTGDGRFVEVQGTAEAEPFAREELNSLLDLAVSGCTELALLQRKAL 239
>gi|342184387|emb|CCC93869.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 252
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 80/177 (45%), Gaps = 7/177 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSNIGR 94
LR D R ++ R G ++ G G + V +V+GPRE S+ Y+ +
Sbjct: 13 LRLDGRRPNEPRRLTLEFGKISGCDGCCTLTTGLSHVCATVYGPREVSSRLDGKYNEV-T 71
Query: 95 LNCNVSYTTFATPVRGQGSDHKDFSSMLHKAL----EGAIILETFPKTTVDVFALVLESG 150
+ C+V FA R + S + ++ ++L +P + + + +L+
Sbjct: 72 ITCDVVVAAFAGERRREHQRRSRLSEEISASVLDVARSVVLLSQYPNSQIHICVELLKQD 131
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIA 207
G+D I+ A +AL DA I M D+V +++V + ++D EE Q ++ IA
Sbjct: 132 GNDKAACINAACLALIDASIAMRDVVYALTVGLIDGLEIVDLTTEEIHSQCPTVCIA 188
>gi|315452709|ref|YP_004072979.1| polyribonucleotide nucleotidyltransferase [Helicobacter felis ATCC
49179]
gi|315131761|emb|CBY82389.1| polyribonucleotide nucleotidyltransferase [Helicobacter felis ATCC
49179]
Length = 679
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 74/155 (47%), Gaps = 11/155 (7%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTK--VIVSVFGPRESKKAMMYSNIG-- 93
RPD RGF RP T + GSA G+T+ V+ +V GP ++K +
Sbjct: 307 RPDGRGFETIRPISIETNLLPHCHGSALFTRGHTQALVVCTVGGPNDAKLQENLDGLHKE 366
Query: 94 RLNCNVSYTTF----ATPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
R + ++ F ATP+ G ++ AL+G+ ILE+ T+ + + +LES
Sbjct: 367 RFMFHYNFPPFSVGEATPLSAPGRREIGHGNLAKCALQGS-ILES--DQTIRLVSEILES 423
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCL 184
GS + S+AL +GI + L+A V++ +
Sbjct: 424 NGSSSMASVCGGSLALYASGIKLKSLIAGVAMGLI 458
>gi|315127898|ref|YP_004069901.1| tRNA nucleotidyltransferase [Pseudoalteromonas sp. SM9913]
gi|359437372|ref|ZP_09227439.1| ribonuclease PH [Pseudoalteromonas sp. BSi20311]
gi|359444209|ref|ZP_09234012.1| ribonuclease PH [Pseudoalteromonas sp. BSi20439]
gi|392557299|ref|ZP_10304436.1| ribonuclease PH [Pseudoalteromonas undina NCIMB 2128]
gi|315016412|gb|ADT69750.1| RNase PH (tRNA nucleotidyltransferase) [Pseudoalteromonas sp.
SM9913]
gi|358027956|dbj|GAA63688.1| ribonuclease PH [Pseudoalteromonas sp. BSi20311]
gi|358041960|dbj|GAA70261.1| ribonuclease PH [Pseudoalteromonas sp. BSi20439]
Length = 237
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 58/140 (41%), Gaps = 8/140 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RP R +Q RP F A GS EFGNTKV+ + + M G +N
Sbjct: 1 MRPSERTPNQIRPVTFTRNYTLHAEGSVLVEFGNTKVLCTATVEAGVPRFMKGQGKGWVN 60
Query: 97 CNVSYTTFATPVRG--------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
AT R QG + ++ ++L AI L+ + T+ + V++
Sbjct: 61 AEYGMLPRATHTRNSREATRGKQGGRTMEIQRLIARSLRAAIDLKALGENTITIDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA 168
+ G IS A VAL DA
Sbjct: 121 ADGGTRTASISGACVALVDA 140
>gi|240279480|gb|EER42985.1| exonuclease RRP41 [Ajellomyces capsulatus H143]
Length = 265
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 93/222 (41%), Gaps = 34/222 (15%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKA---------- 86
LR D R +++ R + ++SGS+Y GNT VI V GP E +++
Sbjct: 14 LRLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGA 73
Query: 87 --------MMYSNIGRLNCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETF 135
+S + R + + G G D + D + L A + + +
Sbjct: 74 VVSVAVNVAGFSGVDRKKKSAT---------GGGGDRQASTDLAFALRDAFQPHLHTHIY 124
Query: 136 PKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGK-NLLIDPVL 194
P +T+ + VL S GS I+ ++AL DAGI M L+ + +V G+ + +P L
Sbjct: 125 PHSTISLHVSVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPAEPEL 184
Query: 195 EEESYQDGS---LMIACMPSRYEVTQLTVTGEWSTPHFNEAM 233
+ S L+ MP E+ +TV P +++M
Sbjct: 185 TRVGGINESLDPLLDMSMPEEQELPFMTVANTNPAPTGDDSM 226
>gi|374989444|ref|YP_004964939.1| ribonuclease PH [Streptomyces bingchenggensis BCW-1]
gi|297160096|gb|ADI09808.1| ribonuclease PH [Streptomyces bingchenggensis BCW-1]
Length = 243
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 92/237 (38%), Gaps = 23/237 (9%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R Q RP A GS FG+T+V+ + + S G +
Sbjct: 3 RIDGRTPDQLRPVTIERAWSKHAEGSVLVSFGDTRVLCTASFTEGVPRWRKGSGEGWVTA 62
Query: 98 NVSYTTFATPVRGQ--------GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+ AT RG G + S ++ ++L I + + TV + VL++
Sbjct: 63 EYAMLPRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDVLQA 122
Query: 150 GGSDLPVVISCASVALADAGIM-------------MYDLVASVSVSCLGKNLLIDPVLEE 196
G I+ A VALADA + V++VSV +G L+D EE
Sbjct: 123 DGGTRTAAITGAYVALADALTWGQGKKLIKAGRQPLTGTVSAVSVGIVGGIPLLDLCYEE 182
Query: 197 ESYQDGSLMIACM-PSRYEVTQLTVTGE-WSTPHFNEAMQLCLDASAKLGKIMRSCL 251
+ + + + C R+ Q T GE ++ N + L + +L +I R+ L
Sbjct: 183 DVRAETDMNVVCTGDGRFVEVQGTAEGEPFAREELNGLLDLAVAGCGELAEIQRAAL 239
>gi|343496398|ref|ZP_08734496.1| ribonuclease PH [Vibrio nigripulchritudo ATCC 27043]
gi|342821237|gb|EGU56025.1| ribonuclease PH [Vibrio nigripulchritudo ATCC 27043]
Length = 238
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 80/207 (38%), Gaps = 20/207 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RPD R Q RP A GS EFGNTKV+ + + + G +
Sbjct: 1 MRPDDRAADQVRPIKMTRNYTAYAEGSVLVEFGNTKVLCNASVEENVPRWLKGQGKGWVT 60
Query: 97 CNVSYTTFATPVRG--------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
AT R QG + ++ ++L + LE + V V V++
Sbjct: 61 AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMVTVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA-------GIM----MYDLVASVSVSCLGKNLLIDPVLEEE 197
+ G IS ASVA+ADA G + M VA+VSV + L D E+
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLIEQGKLKASPMKGHVAAVSVGVVEGKALCDLEYVED 180
Query: 198 SYQDGSL-MIACMPSRYEVTQLTVTGE 223
S D + ++ R Q T GE
Sbjct: 181 SAADTDMNVVMTEDGRMIEVQGTAEGE 207
>gi|336316853|ref|ZP_08571742.1| ribonuclease PH [Rheinheimera sp. A13L]
gi|335879018|gb|EGM76928.1| ribonuclease PH [Rheinheimera sp. A13L]
Length = 237
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 92/218 (42%), Gaps = 20/218 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVS---VFG-PRESK---KAMMY 89
+RP R Q RP F A GS EFGNTKVI + + G PR K K +
Sbjct: 1 MRPSGRTASQIRPITFTRQFTAHAEGSVLVEFGNTKVICTASVIEGVPRFMKGQGKGWIT 60
Query: 90 SNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L RG QG + ++ +AL A+ L+ + T+ + V++
Sbjct: 61 AEYGMLPRATHTRNDREAARGKQGGRTMEIQRLIGRALRTAVDLKLLGENTITIDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA-------GIMMYD----LVASVSVSCLGKNLLIDPVLEEE 197
+ G I+ A VAL DA G++ + +VA+VSV + D E+
Sbjct: 121 ADGGTRTASITGACVALVDALNFMRAKGLIKTNPLNFMVAAVSVGVYKGTAVADLDYAED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQL 235
S + + I M ++ ++ T E + F E Q+
Sbjct: 181 SNAETDMNI-VMTETGKIIEIQGTAEEAPFSFEEMQQM 217
>gi|170067650|ref|XP_001868566.1| exosome complex exonuclease RRP46 [Culex quinquefasciatus]
gi|167863769|gb|EDS27152.1| exosome complex exonuclease RRP46 [Culex quinquefasciatus]
Length = 217
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 93/210 (44%), Gaps = 16/210 (7%)
Query: 48 RPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFA-T 106
RP F + + GSA G T V SV GP E K + +N SY
Sbjct: 11 RPMFCELNILTRSDGSAMLTQGETAVTASVNGPVEVK-------LQHMNVEKSYVEIHFR 63
Query: 107 PVRGQGS-DHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVAL 165
P G GS + + +++ E A++ P+T V + ++ G + I+ +AL
Sbjct: 64 PRSGMGSVNDRLLENLIRNTYESALLTALHPRTAVSIQIQEMQDRGGLVACAINAVCLAL 123
Query: 166 ADAGIMMYDLVASV-SVSCLGKNLLIDPVLEEESYQDGSLMIACM---PSRYEVTQLTVT 221
D+GI M LVA+V SV + +DP +E +D + SR V+ T
Sbjct: 124 IDSGIEMKYLVAAVHSVLDEEGGITLDP--DELRAKDARARFTFVFENTSRNTVSIYT-H 180
Query: 222 GEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
G++++ ++ A+++ DA ++ R+ +
Sbjct: 181 GKFTSEQYHRALRMSTDAVGRVFDFYRTIV 210
>gi|406602742|emb|CCH45700.1| Polyribonucleotide nucleotidyltransferase [Wickerhamomyces
ciferrii]
Length = 236
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 12/139 (8%)
Query: 46 QCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFA 105
Q F ++G + +A+GS++ E V +SV+GPR + + + +N + F
Sbjct: 45 QITRTFIKSGLITNANGSSFLELDGNIVSISVYGPRPIRGSFVEKTTLSVNLEDNTGLFN 104
Query: 106 TPVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSD------LPVVIS 159
+ +K F + I L +PK+ +D+F ++ D L +V
Sbjct: 105 DLL------NKKFCQYIENNFLSVINLSKYPKSGIDIFINIISVQDIDQLYLKLLSLVSD 158
Query: 160 CASVALADAGIMMYDLVAS 178
++A+ DAGI + DLV S
Sbjct: 159 ATTLAIIDAGIEIIDLVVS 177
>gi|293189253|ref|ZP_06607976.1| tRNA nucleotidyltransferase [Actinomyces odontolyticus F0309]
gi|292821716|gb|EFF80652.1| tRNA nucleotidyltransferase [Actinomyces odontolyticus F0309]
Length = 255
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 102/239 (42%), Gaps = 23/239 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI-VSVF------GPRESKKAMMY 89
LR D R Q RP G + GS EFGNT+V+ V+ F R+S + +
Sbjct: 6 LRADGRTPSQLRPVSITRGWSGTGEGSILIEFGNTRVLCVASFTEGVPRWKRDSGEGWVT 65
Query: 90 SNIGRLNCNVSYTTFATPVRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
L + V+G+ G ++ S ++ ++L G + + + T+ + VL
Sbjct: 66 GEYSMLPRATEQRSSRESVKGKVGGRTQEISRLIGRSLRGIVDVSALGENTIVLDCDVLR 125
Query: 149 SGGSDLPVVISCASVALADA-------GIM------MYDLVASVSVSCLGKNLLID-PVL 194
+ G I+ A VALADA GI+ + D ++++SV + ++D P +
Sbjct: 126 ADGGTRTAAITGAYVALADAVSWAKEQGILKPSAKVLTDSISAISVGVIDGTPMLDLPYV 185
Query: 195 EEESYQDGSLMIACMPSRY-EVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
E+ + ++ R+ EV ++ NE + L +A+L + + L+
Sbjct: 186 EDVRAETDMNVVQTGDGRFIEVQGTAEHAPFNRDELNELLDLATLGNARLAEAQKLALE 244
>gi|119188875|ref|XP_001245044.1| hypothetical protein CIMG_04485 [Coccidioides immitis RS]
gi|392867950|gb|EAS33670.2| exosome complex endonuclease 1/ribosomal RNA processing protein
[Coccidioides immitis RS]
Length = 298
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 18/168 (10%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKA--MMYSNIGR 94
LR D R +++ R + ++SGS+Y GNT V+ +V GP E K++
Sbjct: 14 LRLDGRRWNELRLVQAQISTNPASSGSSYLAMGNTVVVCNVHGPAEGKRSETAGGGGGAV 73
Query: 95 LNCNVSYTTFATPVRGQGS-------------DHK---DFSSMLHKALEGAIILETFPKT 138
++ V+ FA R + S D + + SS L A + + +P +
Sbjct: 74 VSVVVNIAGFAGVDRKKKSMMAGGGGGGGGGGDRQATTELSSALRDAFQPHLHTHIYPHS 133
Query: 139 TVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGK 186
T+ V VL S GS I+ ++AL DAGI M L+ + +V G+
Sbjct: 134 TISVHVSVLSSDGSIFAACINACTLALVDAGIPMPGLLCACTVGMSGR 181
>gi|187734903|ref|YP_001877015.1| ribonuclease PH [Akkermansia muciniphila ATCC BAA-835]
gi|187424955|gb|ACD04234.1| ribonuclease PH [Akkermansia muciniphila ATCC BAA-835]
Length = 270
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 101/241 (41%), Gaps = 27/241 (11%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI--GRL 95
R D R Q RP F TG +A+ S FG TKVI +V + + M + G L
Sbjct: 12 RQDKRLVDQLRPISFETGIAPNATASVLVTFGRTKVICAVTIEEDVPRWMKVQRVEGGWL 71
Query: 96 NCNVSYTTFATPVRGQ--------GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVL 147
S ++T R + + ++ ++L A+ L + T+ V VL
Sbjct: 72 TAEYSMLPYSTLDRKRRDITAGKLDGRSSEIQRLIGRSLRAAVDLGKIGQRTIWVDCDVL 131
Query: 148 ESGGSDLPVVISCASVALADA-------GIM----MYDLVASVSVSCLGKNLLIDPVLEE 196
++ G I+ ASVALA A G + M LV++VSV L L+D E
Sbjct: 132 QADGGTRTASITGASVALAIAVNKLVAEGKLAESPMKRLVSAVSVGILEGEALLDLCYVE 191
Query: 197 ESYQDGSL-MIACMPSRYEVTQLTVTGE---WSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
+ +D + M M + E ++ +GE ++ N ++L ++ ++ R +
Sbjct: 192 D--KDAEVDMNLVMTDQGEFVEVQGSGEEAVFTADQMNRMLELGRKGLEEIAELQRQVIA 249
Query: 253 E 253
E
Sbjct: 250 E 250
>gi|407409247|gb|EKF32229.1| ribosomal RNA processing protein 41B, putative,3' exoribonuclease,
putative [Trypanosoma cruzi marinkellei]
Length = 280
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 22/161 (13%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D RGF + R RT + GSA+ G T V+ +V GP +++
Sbjct: 6 LRRDGRGFREMRGKELRTSELTQFDGSAWYSQGLTTVVAAVNGPVAARQEDYR------K 59
Query: 97 CNVS-YTTFATPV-RGQGSD-----------HK---DFSSMLHKALEGAIILETFPKTTV 140
C V Y A + R G+D H+ + L +++ + L+ FP+ +
Sbjct: 60 CGVQVYVNRAVRIPRAGGTDRICMEEQRVEQHRMDAELEMFLTTSIQAVVRLDQFPRCVL 119
Query: 141 DVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSV 181
+V +L G+ L V + AL DAG+ VA+VS+
Sbjct: 120 EVHITILAEDGALLSVATNALMCALLDAGVPCRTTVAAVSI 160
>gi|429328435|gb|AFZ80195.1| exosome complex exonuclease RRP41, putative [Babesia equi]
Length = 254
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 98/236 (41%), Gaps = 17/236 (7%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTG-----AVNSASGSAYAEFGNTKVIVSVFGPRESKKAMM 88
++ LR D R + R G ++ G++ + G KV V V GP E KA+
Sbjct: 9 LEGLRIDGRREREVRNIEIACGFECDVDISGYDGASQIKHGLNKVQVLVKGPSEGGKALR 68
Query: 89 YSNIG-----RLNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEG----AIILETFPKTT 139
+ + V ++T P + S + + + A++G AII + + +
Sbjct: 69 GAQRALDDSVDIRVEVMFSTDKGP---KSSKNDRMVTDIVNAIKGTFGEAIIQDMYKRLA 125
Query: 140 VDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESY 199
+ +F ++E+ G V++ VAL DAGI + DL +S SV L + D E +
Sbjct: 126 IRIFVNIIEADGGIKSTVLNAVGVALIDAGIALRDLTSSCSVVLLENRIFTDGNHLEINA 185
Query: 200 QDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAA 255
L +A S ++ + + + ++ C+ + +I + L+ A
Sbjct: 186 ATAELTVAVYSSSGKMIYVDLRSKVPVKELDDLFDACVRGTGHFSRIAKEKLRSHA 241
>gi|329936575|ref|ZP_08286311.1| ribonuclease [Streptomyces griseoaurantiacus M045]
gi|329304090|gb|EGG47972.1| ribonuclease [Streptomyces griseoaurantiacus M045]
Length = 244
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 85/223 (38%), Gaps = 25/223 (11%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R Q RP G A GS FG+T+V+ + + S G +
Sbjct: 3 RIDGRAPEQLRPVSLARGWSKHAEGSVLVAFGDTRVLCTASFTEGVPRWRKGSGEGWVTA 62
Query: 98 NVSYTTFATPVRGQ--------GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
S AT RG G + S ++ ++L I + + T+ + VL++
Sbjct: 63 EYSMLPRATNTRGDRESVRGRIGGRTHEISRLIGRSLRAVIDYKALGENTIVLDCDVLQA 122
Query: 150 GGSDLPVVISCASVALADAGIM-------------MYDLVASVSVSCLGKNLLIDPVLEE 196
G I+ A VALADA + D V++VSV +G L+D EE
Sbjct: 123 DGGTRTAAITGAYVALADAVSWAQGRKLIKAGRRPLTDTVSAVSVGIVGGAPLLDLCYEE 182
Query: 197 ESYQDGSLMIACM-PSRYEVTQLTVTGEWSTPHFNEAMQLCLD 238
+ D + + C R+ Q T E P + + LD
Sbjct: 183 DVRADTDMNVVCTGDGRFVEVQGTAEAE---PFDRKELNALLD 222
>gi|338214043|ref|YP_004658100.1| polyribonucleotide nucleotidyltransferase [Runella slithyformis DSM
19594]
gi|336307866|gb|AEI50968.1| Polyribonucleotide nucleotidyltransferase [Runella slithyformis DSM
19594]
Length = 743
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 79/174 (45%), Gaps = 12/174 (6%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV-FGPRESKKAM---MYSNIG 93
R D R Q RP + S GSA G T+ + +V G + ++ + MY
Sbjct: 322 RLDGRALDQIRPIMCEVDLLPSPHGSALFTRGETQSLTTVTLGTKMDEQIIDTTMYYGYS 381
Query: 94 RLNCNVSYTTFAT----PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
R + ++ F+T P RG G ++ H++L+ + + T+ + + +LES
Sbjct: 382 RFMLHYNFPGFSTGEVKPNRGPGRREVGHGNLAHRSLKKVLPPDDENPYTIRIVSDILES 441
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCL----GKNLLIDPVLEEESY 199
GS + ++AL DAGI + VA +++ + GK ++ +L +E +
Sbjct: 442 NGSSSMATVCAGTLALMDAGIKIKAPVAGIAMGLITDNSGKYAVLSDILGDEDH 495
>gi|357145083|ref|XP_003573518.1| PREDICTED: exosome complex component RRP42-like [Brachypodium
distachyon]
Length = 286
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 102/231 (44%), Gaps = 49/231 (21%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
LR D R Q RP TG + A+GSA G T+VI SV K +++ + G+++
Sbjct: 20 LRADGRTRLQFRPVIVETGVIPQANGSARVRLGATEVIASVKAEL-GKPTVLHPDKGKVS 78
Query: 97 CNVSYTTFATPV-RGQGSDHKDFSSMLHKALE--------GA---------IILETFPKT 138
V + A P+ G+GS+ D S+ L AL+ GA I+LE
Sbjct: 79 IYVDCSPTAAPIFEGRGSE--DLSAELSVALQRCLLGGKSGAGAAIDLSSLIVLEGKACW 136
Query: 139 TVDVFALVLESGGSDLPVVISCASVALADAGI------------------------MMYD 174
+ V LV+ S G+ + + + VAL+D GI + +D
Sbjct: 137 DLYVDGLVVSSDGNLVDALAAAIKVALSDTGIPKVNVSLNAETDGEPEVDVSDEEFLQFD 196
Query: 175 ---LVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTG 222
+ V+++ +GK+ ++D EEES +L ++ + R ++ LT G
Sbjct: 197 TSSVPVIVTLTKVGKHYIVDATSEEESQMSSALSVS-VNRRGQICGLTKRG 246
>gi|154279662|ref|XP_001540644.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150412587|gb|EDN07974.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 291
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 92/233 (39%), Gaps = 56/233 (24%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKA---------- 86
LR D R +++ R + ++SGS+Y GNT VI V GP E +++
Sbjct: 14 LRLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGA 73
Query: 87 --------MMYSNIGRLNCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETF 135
+S + R + + G G D + D + L A + + +
Sbjct: 74 VVSVAVNVAGFSGVDRKKKSAT---------GGGGDRQASTDLAFALRDAFQPHLHTHIY 124
Query: 136 PKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGK--------- 186
P +T+ + VL S GS I+ ++AL DAGI M L+ + +V G+
Sbjct: 125 PHSTISLHVSVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPAEPEL 184
Query: 187 ------NLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAM 233
N +DP+L+ MP E+ +TV P +++M
Sbjct: 185 TRVGGINESLDPLLD-----------MSMPEEQELPFMTVANTNPAPTGDDSM 226
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.130 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,953,863,905
Number of Sequences: 23463169
Number of extensions: 156647838
Number of successful extensions: 375821
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 3311
Number of HSP's that attempted gapping in prelim test: 371365
Number of HSP's gapped (non-prelim): 4875
length of query: 260
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 121
effective length of database: 9,097,814,876
effective search space: 1100835599996
effective search space used: 1100835599996
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 75 (33.5 bits)