BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024906
(260 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6P0I8|EXOS6_DANRE Exosome complex component MTR3 OS=Danio rerio GN=exosc6 PE=2 SV=2
Length = 271
Score = 155 bits (392), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/261 (36%), Positives = 142/261 (54%), Gaps = 24/261 (9%)
Query: 17 PIDPTRKTRPPIFSGSDVDWLRPDS-----------RGFHQCRPAFFRTGAVNSASGSAY 65
P+D T++ R P S S + +L PD RG RP F R G V+ A GSAY
Sbjct: 2 PVD-TKRIRGPEESQSPLLFLSPDKAPKAPSSRQGVRGNGDVRPVFARCGLVSQAKGSAY 60
Query: 66 AEFGNTKVIVSVFGPRES-KKAMMYSNIGRLNCNVSYTTFATPVRG---QGSDHKDFSSM 121
E GNTK+I SV+GP+E+ ++ GRL C+ F+ RG QGS+ +D S+
Sbjct: 61 IEAGNTKIICSVYGPKETERRDETDMKTGRLVCDFRLAPFSCVKRGAWIQGSEERDLSAT 120
Query: 122 LHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSV 181
L ++L + L +P++ +DV +VLE+ GS L ++CAS+ALADAGI MYD+V ++
Sbjct: 121 LMESLRPGVCLHRYPRSQIDVNVMVLENDGSVLAHAVTCASMALADAGIEMYDIVLGCTL 180
Query: 182 SCLGKNLLIDPVLEEE--SYQD------GSLMIACMPSRYEVTQLTVTGEWSTPHFNEAM 233
G L+DP EE S+Q+ G + +A +P+ +V+ L GE EAM
Sbjct: 181 RQSGNACLVDPSYAEECGSWQEGYGDNQGCVTLALLPNLNQVSGLNADGEMREDTLTEAM 240
Query: 234 QLCLDASAKLGKIMRSCLKEA 254
+ C+D KL +++ L A
Sbjct: 241 RTCMDGCHKLYPVVQQALTRA 261
>sp|Q8U0L9|ECX1_PYRFU Probable exosome complex exonuclease 1 OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=PF1568 PE=3 SV=1
Length = 250
Score = 132 bits (333), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 125/225 (55%), Gaps = 4/225 (1%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSN 91
D + R D R ++ RP + G + +A+GSAY E+G K+I +V+GPRE K + +
Sbjct: 12 DENGRRLDGRKKYELRPIKMKVGVLKNANGSAYIEWGKNKIIAAVYGPREIHPKHLQRPD 71
Query: 92 IGRLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
L + F+ R + G D + + S ++ ALE A+ILE FP+T +DVF VL+
Sbjct: 72 RAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIRGALEPALILEMFPRTAIDVFIEVLQ 131
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ I+ AS+ALADAGI M DLVA+ S + +++D EE++Y + + +A
Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDLVAACSAGKIEGEIVLDLNKEEDNYGEADVPVAI 191
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
MP + ++T L + G + F EA++L + + + + R LKE
Sbjct: 192 MPIKNDITLLQMDGYLTKEEFIEAVKLAIKGAKAVYQKQREALKE 236
>sp|O59223|ECX1_PYRHO Probable exosome complex exonuclease 1 OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=PH1549 PE=3 SV=1
Length = 249
Score = 132 bits (331), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 126/225 (56%), Gaps = 4/225 (1%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSN 91
D + R D R ++ RP + G + +A+GSAY E+G K+I +V+GPRE K + +
Sbjct: 12 DENGRRIDGRKKYELRPIKMKVGVLKNANGSAYIEWGRNKIIAAVYGPRELHSKHLQRPD 71
Query: 92 IGRLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
L + F+ R + G D + + S ++ ALE A+ILE FP+T++DVF VL+
Sbjct: 72 RAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTSIDVFIEVLQ 131
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ I+ AS+ALADAGI M DLVA+ + + +++D EE++Y + + +A
Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVAI 191
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
MP + ++T L + G + F EA++L + + + + R LKE
Sbjct: 192 MPLKNDITLLQMDGYLTKEEFIEAVRLAIKGAKAVYQKQREALKE 236
>sp|O26779|ECX1_METTH Probable exosome complex exonuclease 1 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_683 PE=1 SV=1
Length = 240
Score = 130 bits (328), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 120/221 (54%), Gaps = 4/221 (1%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRL 95
+R D R F + RP G + A GS+Y EFG K++V+V+GPRE++ + + + +
Sbjct: 16 VREDGRAFDELRPLKIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVI 75
Query: 96 NCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
C + F+ R + G D + + S + +AL A+ILE FP++ +DVF VLE+ G
Sbjct: 76 RCRYNMAPFSVEERKRPGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEAEGG 135
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSR 212
I+ ASVALADAGI M D+V + + +G +++D EE+ + +A +P
Sbjct: 136 TRCAGITAASVALADAGIPMRDMVVACAAGKVGDQVVLDLSEEEDKEGQADVPVAILPRT 195
Query: 213 YEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
E+T L G + F A+ L ++ ++ ++ + L++
Sbjct: 196 REITLLQSDGNLTPEEFERALDLAVEGCLRIHEVQKEALRK 236
>sp|Q9V119|ECX1_PYRAB Probable exosome complex exonuclease 1 OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=PYRAB06100 PE=1 SV=1
Length = 249
Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 124/225 (55%), Gaps = 4/225 (1%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSN 91
D + R D R ++ RP G + +A+GSAY E+G K+I +V+GPRE K + +
Sbjct: 12 DENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPD 71
Query: 92 IGRLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
L + F+ R + G D + + S ++ ALE A+ILE FP+T +DVF VL+
Sbjct: 72 RAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQ 131
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ I+ AS+ALADAGI M DLVA+ + + +++D EE++Y + + +A
Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVAI 191
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
MP + ++T L + G + F EA++L + + + + R LKE
Sbjct: 192 MPLKNDITLLQMDGYLTKDEFIEAVKLAIKGAKAVYQKQREALKE 236
>sp|B6YSI2|ECX1_THEON Probable exosome complex exonuclease 1 OS=Thermococcus onnurineus
(strain NA1) GN=TON_0030 PE=3 SV=1
Length = 249
Score = 128 bits (322), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 123/225 (54%), Gaps = 4/225 (1%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSN 91
D + R D R ++ RP G + +A GSAY E+G K++ +V+GPRE K + +
Sbjct: 12 DENGRRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIHPKHLQRPD 71
Query: 92 IGRLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
L + F+ R + G D + + S ++ ALE A+ILE FP+T +D+F VL+
Sbjct: 72 RAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPALILEMFPRTAIDIFIEVLQ 131
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ I+ AS+ALADAGI M DLVA+ + + +++D EE++Y + + +A
Sbjct: 132 ADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVAI 191
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
MP + ++T L + G + F EA++L + + + + R LKE
Sbjct: 192 MPLKNDITLLQMDGYLTRDEFIEAVRLAIKGAKAVYQKQREALKE 236
>sp|Q5JIR6|ECX1_PYRKO Probable exosome complex exonuclease 1 OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=TK1634 PE=3
SV=1
Length = 249
Score = 127 bits (319), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 124/233 (53%), Gaps = 4/233 (1%)
Query: 25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-S 83
RP D + R D R ++ RP G + +A GSAY E+G KV+ +V+GPRE
Sbjct: 4 RPEGLKLIDENGKRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKVLAAVYGPREIH 63
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTV 140
K + + L + F+ R + G D + + S ++ ALE A++L FP+T +
Sbjct: 64 PKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPALLLHMFPRTAI 123
Query: 141 DVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQ 200
DVF +L++ I+ AS+ALADAGI M DLVA+ + + +++D EE++Y
Sbjct: 124 DVFIEILQADAGTRVAGITAASLALADAGIPMKDLVAACAAGKIDGEIVLDLNKEEDNYG 183
Query: 201 DGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
+ + +A MP + ++T L + G + F EA++L + + + + R LKE
Sbjct: 184 EADVPVAIMPLKNDITLLQMDGYLTKDEFLEAVRLAIKGAKAVYQKQREALKE 236
>sp|C5A2B9|ECX1_THEGJ Probable exosome complex exonuclease 1 OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=TGAM_2036 PE=3 SV=1
Length = 249
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 124/233 (53%), Gaps = 4/233 (1%)
Query: 25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-S 83
RP D + R D R ++ R G + +A GSAY E+G K++ +V+GPRE
Sbjct: 4 RPEGLKLIDENGRRIDGRRKYELRKIHMEVGVLKNADGSAYIEWGKNKILAAVYGPREIH 63
Query: 84 KKAMMYSNIGRLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTV 140
K + + L + F+ R + G D + + S ++ ALE A+ILE FP+T V
Sbjct: 64 PKHLQRPDTAVLRVRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPALILEMFPRTVV 123
Query: 141 DVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQ 200
DVF VL++ I+ AS+ALADAG+ M DLVA+ + + +++D +E++Y
Sbjct: 124 DVFIEVLQADAGTRVAGITAASLALADAGVPMRDLVAACAAGKIDGEIVLDLNKDEDNYG 183
Query: 201 DGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
+ + +A MP + ++T L + G + F EA++L + + + + R LKE
Sbjct: 184 EADVPVAIMPLKNDITLLQMDGYLTKEEFIEAVKLAIKGAKAVYQKQREALKE 236
>sp|Q97BZ5|ECX1_THEVO Probable exosome complex exonuclease 1 OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=TV0310 PE=3 SV=1
Length = 248
Score = 124 bits (312), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 122/221 (55%), Gaps = 4/221 (1%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIG 93
D LR D R F++ RP G +N A GSAY E+G K+IV V+GP+E+ K +
Sbjct: 15 DNLRLDGRSFNELRPIKIEAGVLNRADGSAYIEWGGNKIIVGVYGPKEAYPKHSQDIDHA 74
Query: 94 RLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ + F+ R + G D + + S ++ +AL +I++E FP+ +DV+ VL++
Sbjct: 75 VVKARYNMAAFSVDERKRPGPDRRTMEISKVISEALSSSIMIEQFPRAEIDVYIEVLQAD 134
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
++ A+VALADAGI M D+V + + ++++D EE+++ + + +A MP
Sbjct: 135 AGTRIAGLTAATVALADAGIPMRDMVVGCTAGKVDGHIVLDLSKEEDNFGEADIPMAIMP 194
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
E+ L + G+ + F EA + ++A+ K+ +I R+ L
Sbjct: 195 KTGEIVLLQMDGDVTEDEFYEATSMIIEATKKISQIQRNAL 235
>sp|Q28F19|EXOS6_XENTR Exosome complex component MTR3 OS=Xenopus tropicalis GN=exosc6 PE=2
SV=1
Length = 270
Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 126/224 (56%), Gaps = 10/224 (4%)
Query: 41 SRGFHQCRPAFFRTGAVNSASGSAYAEFGN--TKVIVSVFGPRESKKAMMYSNI-GRLNC 97
RG + RP F R G ++ A GSAY E G+ TKV+ +V GPRE + GRL C
Sbjct: 34 GRGPSEPRPVFVRAGLLSQAKGSAYLEAGSGGTKVLCAVHGPRERGMGGERAETRGRLLC 93
Query: 98 NVSYTTFAT--PVRGQ---GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
++ + F+ P G G + L ++LE A+ L+ +P+ V V+ LVLE GS
Sbjct: 94 DLRWAPFSRRGPWSGSCPAGPSPRQAGLQLQESLEPAVRLDRYPRAEVIVWVLVLEDRGS 153
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVS-CLGKNLLIDP-VLEEESYQDGSLMIACMP 210
LP +SCAS+ALADAGI M+DL +S G LL+DP EEE+ G++ ++ +P
Sbjct: 154 ALPAAVSCASLALADAGIEMFDLALGCGLSRGPGGELLLDPDDDEEEAGSGGTMSLSLLP 213
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEA 254
+ +V+ L +GEW EA++LC++ +L ++ CL +A
Sbjct: 214 TLNQVSGLISSGEWEGESSEEAVRLCMEGCQRLYPVLHQCLVKA 257
>sp|Q8TYC1|ECX1_METKA Probable exosome complex exonuclease 1 OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=MK0381 PE=3 SV=1
Length = 239
Score = 122 bits (306), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 8/225 (3%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE---SKKAMMYSN 91
D LR D R + RP + G + A GSAY E G K++ +V+GPRE K
Sbjct: 12 DGLRLDGRKPDEMRPLKIQAGVLKRADGSAYLELGANKIVAAVYGPRELHPRHKQKPDRA 71
Query: 92 IGRLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ R N++ F+ R + G D + + S + +ALE AI E +P+T +D+F VL+
Sbjct: 72 VVRFRYNMA--PFSVDERKRPGPDRRSIEISKLSKEALEPAIFTEYYPRTAIDIFVEVLQ 129
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ IS ASVALADAGI M DLVA+ + + +++DP+ E+ Y + + +A
Sbjct: 130 ADAGTRCAGISAASVALADAGIEMRDLVAACAAGKVEGKVVLDPMYYEDGYGEADVPLAM 189
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
MP ++T L + G+ + F +A++L + K R LKE
Sbjct: 190 MPKEGKITLLQMDGDMTPGEFKQAVKLAKKGCKIVYKEQRRALKE 234
>sp|Q9HIP2|ECX1_THEAC Probable exosome complex exonuclease 1 OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta1293 PE=3 SV=1
Length = 248
Score = 121 bits (303), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 121/221 (54%), Gaps = 4/221 (1%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIG 93
D LR D R F++ RP + G +N A GSAY E+G K++V V+GP+E+ K +
Sbjct: 15 DNLRLDGRSFNELRPIKIQAGVLNRADGSAYIEWGGNKIMVGVYGPKEAYPKHSQDIDHA 74
Query: 94 RLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ + F+ R + G D + + S ++ +AL +I++E FP+ +DV+ VL++
Sbjct: 75 IVKARYNMAAFSVDERKRPGPDRRTMEISKVISEALSSSIMIEQFPRAEIDVYIEVLQAD 134
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
++ A+VALADAG+ M D+V + + ++++D EE++Y + + IA MP
Sbjct: 135 AGTRIAGLTAATVALADAGVPMRDMVVGCTAGKVDGHMVLDLSKEEDNYGEADIPIAIMP 194
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
++ + + G+ + +AM + +A+ ++ +I R L
Sbjct: 195 KTGDIVLMQMDGDVTEDELYQAMDMIFEATKRISQIQREAL 235
>sp|A9A5C9|ECX1_NITMS Probable exosome complex exonuclease 1 OS=Nitrosopumilus maritimus
(strain SCM1) GN=Nmar_0432 PE=3 SV=1
Length = 244
Score = 118 bits (296), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 120/225 (53%), Gaps = 4/225 (1%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
D + R D R + R + G + +A GS+Y EFG+ K++V VFGPR+ K M ++
Sbjct: 12 DENGKRCDGRTVDEPRRIMIKAGGLKNADGSSYIEFGDNKILVGVFGPRDVHPKHMSDTD 71
Query: 92 IGRLNCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
G L F+ R + + + S ++ +ALE A++LE FP+T VDVF VL+
Sbjct: 72 TGILRVRYHMEPFSVGERKNPAPSRREIEISKVIKEALEPAVMLEKFPRTAVDVFIEVLQ 131
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ G ++ ASVALADAGI M D+VA+++ + +++D EE+ + I
Sbjct: 132 ADGGTRCAALTAASVALADAGIPMRDMVAAIAAGKVADTVILDVNNEEDQAGQADMPIGY 191
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
MP+ ++T L + G + + + +Q+ +D + ++ + L +
Sbjct: 192 MPNLEKITLLQLDGVLTPEEYKKCIQVGVDGCKLVYELQKKALND 236
>sp|A2BKC0|ECX1_HYPBU Probable exosome complex exonuclease 1 OS=Hyperthermus butylicus
(strain DSM 5456 / JCM 9403) GN=Hbut_0571 PE=3 SV=1
Length = 255
Score = 118 bits (295), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 118/221 (53%), Gaps = 4/221 (1%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRL 95
+R D R Q RP G +++A GSA E+G T+VI +V+GPRE+ + + + +
Sbjct: 24 IRHDGRLPEQLRPIRMEVGVLSNADGSALVEYGGTRVIAAVYGPREAHPRHVALPDRAII 83
Query: 96 NCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
C F+T R + + + S ++ +ALE +I E +P+T +DV+ VL+S G
Sbjct: 84 RCRYHMAPFSTAERKTPAPTRREVELSKVIREALEAVVISELYPRTAIDVYMEVLQSDGG 143
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSR 212
I+ AS+ALADAGI M DLVA V+V + L++D E++Y + + +A PS
Sbjct: 144 TRTAAITAASLALADAGIAMRDLVAGVAVGKVDGVLVLDIDEIEDNYAEADMPVAMAPSL 203
Query: 213 YEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
+V L + G + F +A++L + + + L++
Sbjct: 204 DKVLLLQLNGVLTHDEFVKALELARKGIQVIYNLQKEALRK 244
>sp|A1RST0|ECX1_PYRIL Probable exosome complex exonuclease 1 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=Pisl_0836 PE=3 SV=1
Length = 246
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 119/235 (50%), Gaps = 17/235 (7%)
Query: 27 PIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKK 85
P+F + +R D R Q R G V++A GSA +G T + +V+GPRE +
Sbjct: 7 PLFQ----NGVRADGRAPDQMREVNITVGIVSNADGSAMVSYGATTAVAAVYGPREMHPR 62
Query: 86 AMMYSNIGRLNCNVSYTTFAT--------PVRGQGSDHKDFSSMLHKALEGAIILETFPK 137
+ + G + F+T P R + + S +L +ALE A++LE +P+
Sbjct: 63 HLSLPDRGVMRVRYHMAPFSTKDERKSPTPTRRE----IEISKILREALEPAVVLEQYPR 118
Query: 138 TTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEE 197
+ +DVF +L++ GS ++ AS+ALADAG+ M DLV VSV + +++D E+
Sbjct: 119 SRIDVFIEILQADGSTRVASLTAASLALADAGVYMRDLVIGVSVGLVDGAVVLDLNGLED 178
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
Y +G L + MP+ T L + G W+ F EA+ L + + + + R LK
Sbjct: 179 QYGEGDLPVGYMPNLKRFTLLQLDGAWTRDKFLEALNLAIKGAEFVYQKARDALK 233
>sp|Q975G8|ECX1_SULTO Probable exosome complex exonuclease 1 OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=STK_04430 PE=3 SV=2
Length = 243
Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 109/204 (53%), Gaps = 4/204 (1%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRL 95
LR D R + RP G + +A GSA E GNTKVI +V+GP+E + + + L
Sbjct: 15 LRLDGRKPDEMRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDRAVL 74
Query: 96 NCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
T F+T R + + + S ++ +ALE I++E FP+T +DVF VL++
Sbjct: 75 RVRYHMTPFSTDERKNPAPSRREIELSKVIREALESTILVELFPRTVIDVFMEVLQADAG 134
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSR 212
V + AS+ALADAGI M DL+A V+V L++D E+ + + + +A MPS
Sbjct: 135 TRLVSLMAASMALADAGIPMRDLIAGVAVGKADGVLVLDLNEPEDMWGEADMPVAMMPSL 194
Query: 213 YEVTQLTVTGEWSTPHFNEAMQLC 236
+V L + G + F +A+++
Sbjct: 195 KQVALLQLNGNMTPQEFRQALEMA 218
>sp|B1Y978|ECX1_PYRNV Probable exosome complex exonuclease 1 OS=Pyrobaculum neutrophilum
(strain DSM 2338 / JCM 9278 / V24Sta) GN=Tneu_1381 PE=3
SV=1
Length = 246
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 116/235 (49%), Gaps = 17/235 (7%)
Query: 27 PIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-K 85
P+ G +R D R Q R G +++A GSA +G T + +V+GPRE +
Sbjct: 7 PLLQGG----VRADGRAPDQMREVQISVGVISNADGSAMVSYGATTAVAAVYGPREMHPR 62
Query: 86 AMMYSNIGRLNCNVSYTTFAT--------PVRGQGSDHKDFSSMLHKALEGAIILETFPK 137
+ + G + F+T P R + + S +L +ALE A++LE +P+
Sbjct: 63 HLSLPDRGVMRVRYHMAPFSTKDERKSPTPSRRE----IEISKVLREALEPAVMLEQYPR 118
Query: 138 TTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEE 197
+ +DVF +L++ GS ++ AS+ALADAGI M DLV VSV + +++D E+
Sbjct: 119 SRIDVFIEILQADGSTRVASLTAASLALADAGIYMRDLVIGVSVGLVDGTVVLDLNGLED 178
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
Y +G L + MP+ T L + G W EA+ L + + + + R LK
Sbjct: 179 QYGEGDLPVGYMPNLRRYTLLQLDGAWGRDKLLEALNLAVKGAEFVYQKARDALK 233
>sp|Q9UXC2|ECX1_SULSO Probable exosome complex exonuclease 1 OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
GN=SSO0735 PE=1 SV=1
Length = 248
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 112/222 (50%), Gaps = 4/222 (1%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIG 93
D R D R + R G + +A GSA E GNTK I +V+GP+E + + +
Sbjct: 16 DGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRA 75
Query: 94 RLNCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
L T F+T R + + + S ++ +ALE A+++E FP+T +DVF +L++
Sbjct: 76 VLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQAD 135
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
V + AS+ALADAGI M DL+A V+V +++D E+ + + + IA MP
Sbjct: 136 AGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIAMMP 195
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
S +VT + G + F +A L + + + R LK
Sbjct: 196 SLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALK 237
>sp|Q9YC03|ECX1_AERPE Probable exosome complex exonuclease 1 OS=Aeropyrum pernix (strain
ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=APE_1447 PE=3 SV=1
Length = 246
Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 117/225 (52%), Gaps = 6/225 (2%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
D R D R RP + G +++A GSA EFG T+V+ +V+GPRE + Y R
Sbjct: 14 DGRRHDGRLPEDLRPVRMQVGILHNADGSALVEFGRTRVLAAVYGPREPHQ-RFYVLPDR 72
Query: 95 LNCNVSY--TTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
V Y F+T R + + + S ++ +ALE ++ E FP+T +DVF VL++
Sbjct: 73 AALRVRYHMAPFSTDERKSPAPSRREIELSKVVREALEPVVLAEEFPRTVIDVFLEVLQA 132
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACM 209
G ++ AS+ALADAGI M LV V+V + L++D E+ Y + + +A
Sbjct: 133 DGGTRTAAVTAASLALADAGIPMRALVGGVAVGKIQGVLVVDVDELEDMYGEADMPVAAA 192
Query: 210 PSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEA 254
P E+T L + G + F A+ + L A ++ ++ + ++++
Sbjct: 193 PDIGEITLLQLNGVLTGEEFRTALAMALRAIDRVVEMEKEAIRKS 237
>sp|A3MUP1|ECX1_PYRCJ Probable exosome complex exonuclease 1 OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=Pcal_0933 PE=3 SV=1
Length = 246
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 13/225 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRL 95
LR D R Q R + G V++A GSA +G T + +V+GPRE + + + G +
Sbjct: 13 LRADGRAPDQMREVQIQVGTVSNADGSAVVSYGATTAVAAVYGPREMHPRHLSLPDRGVM 72
Query: 96 NCNVSYTTFAT--------PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVL 147
F+T P R + + S +L +ALE A++LE +P++ +DVF +L
Sbjct: 73 RVRYHMAPFSTKDERKSPTPSRRE----IEISKVLREALEPAVMLEQYPRSRIDVFIEIL 128
Query: 148 ESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIA 207
++ GS ++ AS+ALADAGI M DLV VSV + +++D E++Y +G + +
Sbjct: 129 QADGSTRVASLTAASLALADAGIYMRDLVVGVSVGLVDGTVVLDLNGLEDNYGEGDMPVG 188
Query: 208 CMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
MP+ T L + G W+ F EA+ L + + + ++ R LK
Sbjct: 189 YMPNLRRFTLLQLDGAWTREKFLEALGLAVKGAEYVYQVAREALK 233
>sp|Q4JB27|ECX1_SULAC Probable exosome complex exonuclease 1 OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=Saci_0610 PE=3 SV=1
Length = 243
Score = 108 bits (269), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 114/220 (51%), Gaps = 4/220 (1%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRL 95
LR D R + RP G + +A GSA E GNTKVI +V+GP+E + + + L
Sbjct: 15 LRTDGRKLDELRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDKASL 74
Query: 96 NCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
T F+T R + + + S ++ +ALE I+L FP+T +D+F VL++
Sbjct: 75 RVRYHMTPFSTDERKNPAPSRREIELSKVIREALESTILLNLFPRTVIDIFMEVLQADAG 134
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSR 212
V + AS+ALADAGI M DL+A V+V +L++D +E+ + + + IA +PS
Sbjct: 135 TRLVALMAASMALADAGIPMRDLIAGVAVGKADGSLVLDLNEQEDMWGEADMPIAVLPSL 194
Query: 213 YEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
+V L + G + F A +L + + + + LK
Sbjct: 195 GQVVLLQLNGFMTPDEFRRAFELAQKGISSIYALQKEALK 234
>sp|Q8ZVM9|ECX1_PYRAE Probable exosome complex exonuclease 1 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=PAE2207 PE=3 SV=1
Length = 246
Score = 107 bits (268), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 116/225 (51%), Gaps = 13/225 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRL 95
+R D R Q R G V++A GSA +G T + +V+GPRE + + + G +
Sbjct: 13 VRADGRTPDQMREVKIAVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVM 72
Query: 96 NCNVSYTTFAT--------PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVL 147
F+T P R + + S +L +ALE AI+LE +P++ +DVF +L
Sbjct: 73 RVRYHMAPFSTKDERKSPTPSRRE----IEISKILREALEPAIVLEQYPRSRIDVFVEIL 128
Query: 148 ESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIA 207
++ GS ++ AS+ALADAGI M DLV VSV + +++D E+ Y +G L +
Sbjct: 129 QADGSTRVASLTAASLALADAGIYMRDLVVGVSVGLVDGTVVLDLNGLEDQYGEGDLPLG 188
Query: 208 CMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
MP+ T L + G W+ F +A+ L + + + +I R LK
Sbjct: 189 YMPNLKRFTLLQLDGAWTRDMFLQALNLAVRGAEYVYQIARDALK 233
>sp|Q8BTW3|EXOS6_MOUSE Exosome complex component MTR3 OS=Mus musculus GN=Exosc6 PE=1 SV=1
Length = 273
Score = 103 bits (257), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 127/249 (51%), Gaps = 21/249 (8%)
Query: 23 KTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE 82
+++PP ++ D P +R + RP + R G ++ A GSAY E G TKV+ +V GPR+
Sbjct: 13 ESQPPQLYAAEDDET-PAARDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQ 71
Query: 83 SKKAMMYSNI------------GRLNCNVSYTTFATPVR----GQGSDHKDFSSMLHKAL 126
++ S GRL C+ F+ R G G + ++ L +AL
Sbjct: 72 AEGGERGSGPAGAGGEAPAALRGRLLCDFRRAPFSGRRRRAPQGGGGEDRELGLALQEAL 131
Query: 127 EGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCL-- 184
E A+ L +P+ ++V AL+LE GG L ++ A++ALADAG+ MYDLV +S
Sbjct: 132 EPAVRLGRYPRAQLEVSALLLEDGGCALAAALTAAALALADAGVEMYDLVVGCGLSLTPG 191
Query: 185 -GKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWS-TPHFNEAMQLCLDASAK 242
L+DP EE + L +A MP +V L +GE T + +A++L L+ +
Sbjct: 192 PSPTWLLDPTRLEEEHSAAGLTVALMPVLNQVAGLLGSGEGGQTESWTDAVRLGLEGCQR 251
Query: 243 LGKIMRSCL 251
L +++ CL
Sbjct: 252 LYPVLQQCL 260
>sp|Q8PTT8|ECX1_METMA Probable exosome complex exonuclease 1 OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=MM_2623 PE=3 SV=1
Length = 493
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 111/223 (49%), Gaps = 5/223 (2%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES---KKAMMYSN 91
D LR D R + RP G ++ A GS Y E+G K++V VFGPRE+ + S
Sbjct: 14 DGLRLDGRRADEIRPMKIEVGVLSRADGSCYLEWGRNKILVGVFGPREAHPRRSQRADSA 73
Query: 92 IGRLNCNVSYTTFATPVR-GQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESG 150
+ R N++ + R G + S + +A E I+ E FPKT +D+F VL++
Sbjct: 74 VIRYRYNMASFSVEDRARPGPSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVEVLQAD 133
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
I+ +S+ALADAGI M L+ S + + +++D EE++Y + +A M
Sbjct: 134 AGTRTAAINASSIALADAGIPMKGLITSCAFGKVDGKIVLDLNKEEDNYGEADFPVA-MT 192
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
E+T + + G + + ++L ++ +I ++ L++
Sbjct: 193 QDGEITLIQMDGNLTPDEIKQGLELVKKGCKEILEIQQAVLRK 235
>sp|O29757|ECX1_ARCFU Probable exosome complex exonuclease 1 OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=AF_0493 PE=1 SV=1
Length = 258
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 112/227 (49%), Gaps = 11/227 (4%)
Query: 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMY---S 90
VD LR D R F + RP + A GS Y E G KVI +VFGPRE +
Sbjct: 13 VDGLRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPRHLQDPSK 72
Query: 91 NIGRLNCNVSYTTFATPVRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVL 147
I R N++ F+ R + G D + + S + +A E I+ E FP++ +D+F VL
Sbjct: 73 AIIRYRYNMA--PFSVEERKRPGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVL 130
Query: 148 ESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIA 207
++ ++ ASVAL DAG+ M ++ SV+V L++DP+ EE+++ + + A
Sbjct: 131 QADAGSRTACLNAASVALVDAGVPMKGMITSVAVGKADGQLVLDPMKEEDNFGEADMPFA 190
Query: 208 CMPSRYEVTQ---LTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCL 251
+ ++ L + G + +A++L + ++ ++ R +
Sbjct: 191 FLIRNGKIESIALLQMDGRMTRDEVKQAIELAKKGALQIYEMQREAI 237
>sp|A0RXU1|ECX1_CENSY Probable exosome complex exonuclease 1 OS=Cenarchaeum symbiosum
(strain A) GN=CENSYa_1536 PE=3 SV=1
Length = 243
Score = 102 bits (253), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 122/225 (54%), Gaps = 4/225 (1%)
Query: 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
D + +R D R + R G +N+A+GSAY EFG+ K++ +FGPR+ K M+ +
Sbjct: 12 DENGIRCDGRKISETRRVEITAGVLNNANGSAYIEFGDNKILAGIFGPRDVHPKHMVRTE 71
Query: 92 IGRLNCNVSYTTFATPVRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
G L C + F+ R + + + + S ++ +ALE +++LE FP+T VDVF VL+
Sbjct: 72 TGILRCRYHMSPFSVSERKKPAPSRREIEISKVIKEALEPSLMLEQFPRTAVDVFIEVLQ 131
Query: 149 SGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIAC 208
+ G ++ ASVALADAGI M D+V++ + + +++D EE+ + +
Sbjct: 132 ADGGSRCAALAAASVALADAGIPMRDMVSACAAGKVADTIVLDVNNEEDQAGQADMPVGY 191
Query: 209 MPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKE 253
MP+ +VT + + G + ++ + +D ++ ++ + L +
Sbjct: 192 MPNLDQVTLIQLDGVLTPDEYSRCAAMAIDGCKQVYEVQKKALSD 236
>sp|A8WQQ5|EXOS4_CAEBR Putative exosome complex component RRP41 OS=Caenorhabditis briggsae
GN=exos-4.1 PE=3 SV=1
Length = 240
Score = 101 bits (251), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 108/227 (47%), Gaps = 8/227 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
R D R Q R R G +A GS Y E GNTKV+ +V+GP ESK + + +
Sbjct: 9 FRMDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYESKASKRLEDRCAIV 68
Query: 97 CNVSYTTFATPVRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
C S TTF+ R D K + S +L KA E I+ E+FP++ +D+F V++ GS
Sbjct: 69 CQYSTTTFSGLERKNRPRGDRKSTEISRLLEKAFESVILTESFPRSQIDIFCEVIQGDGS 128
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSR 212
+L ++ S+ALADAGI M + ++ + + ++D EE+ + +A + R
Sbjct: 129 NLAACVNATSLALADAGIPMKGIASAATCGIVETKPIVDLTSREETDLLPRVTLATICGR 188
Query: 213 YEVTQLTVTGEWSTPHFNEAMQ----LCLDASAKLGKIMRSCLKEAA 255
EV + + H + M C D L + + LK A
Sbjct: 189 DEVILVELQNRLHIDHLSVVMDAAKATCADVYECLAVVAQQHLKACA 235
>sp|A4WM67|ECX1_PYRAR Probable exosome complex exonuclease 1 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=Pars_1937 PE=3 SV=1
Length = 246
Score = 97.4 bits (241), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 115/225 (51%), Gaps = 13/225 (5%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRL 95
+R D R Q R G V++A GSA +G T + +V+GPRE + + + G +
Sbjct: 13 VRADGRLPDQMREVKISVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVM 72
Query: 96 NCNVSYTTFAT--------PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVL 147
F+T P R + + S +L +ALE A++LE +P++ +DVF ++
Sbjct: 73 RVRYHMAPFSTKDERKSPTPSRRE----IEISKVLREALEPAVLLEQYPRSRIDVFIEII 128
Query: 148 ESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIA 207
++ GS ++ AS+ALADAGI M DLV VSV + +++D E++Y +G L +
Sbjct: 129 QADGSTRVASLTAASLALADAGIYMRDLVVGVSVGLVDGVVVLDLNGLEDNYGEGDLPVG 188
Query: 208 CMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLK 252
MP+ L + G W F +A+ L + + + +I R LK
Sbjct: 189 YMPNLKRFVLLQLDGAWKREVFLQALNLAVKGAEYVYQIARDALK 233
>sp|Q17533|EXOS4_CAEEL Putative exosome complex component RRP41 OS=Caenorhabditis elegans
GN=exos-4.1 PE=2 SV=2
Length = 240
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 106/227 (46%), Gaps = 8/227 (3%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
R D R Q R R G +A GS Y E GNTKV+ +V+GP E K + + +
Sbjct: 9 FRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKSSKRIEDKCAIV 68
Query: 97 CNVSYTTFATPVRGQGS--DHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 152
C S T F+ R + D K + S +L KA E I+ E FP++ +D+F V++ GS
Sbjct: 69 CQYSATKFSGLERKNRTRGDRKSTEISRLLEKAFESVILTEAFPRSQLDIFCEVIQGDGS 128
Query: 153 DLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPSR 212
+L ++ S+ALADAGI M + ++ + + ++D EE+ + +A + R
Sbjct: 129 NLAACVNATSLALADAGIPMKGIASAATCGVVDGKPIVDLTSREETDLLPRVTLATICGR 188
Query: 213 YEVTQLTVTGEWSTPHFNEAMQ----LCLDASAKLGKIMRSCLKEAA 255
EV + + H + M C D L + + LK A
Sbjct: 189 DEVILVELQNRLHIDHLSTVMDAAKATCADVYECLAVVAQQHLKACA 235
>sp|Q9NPD3|EXOS4_HUMAN Exosome complex component RRP41 OS=Homo sapiens GN=EXOSC4 PE=1 SV=3
Length = 245
Score = 94.4 bits (233), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 105/229 (45%), Gaps = 12/229 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + +A + +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 96 NCNVSYTTFATPVRGQGSDHKDFSS-----MLHKALEGAIILETFPKTTVDVFALVLESG 150
NC S TF+T R + H D S L + E AI+ + P++ +D++ VL++
Sbjct: 73 NCQYSSATFSTGERKR-RPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQAD 131
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
G ++ A++A+ DAGI M D V + S + L D EE+ L +A +P
Sbjct: 132 GGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLP 191
Query: 211 SRYEVTQLTVTGEWSTPHFNE----AMQLCLDASAKLGKIMRSCLKEAA 255
+ ++ L + H A Q D L +++R ++EA+
Sbjct: 192 ASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQHVREAS 240
>sp|Q7YRA3|EXOS4_BOVIN Exosome complex component RRP41 OS=Bos taurus GN=EXOSC4 PE=2 SV=3
Length = 245
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 107/229 (46%), Gaps = 12/229 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + +A + +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 96 NCNVSYTTFATPVRGQGSDHKDFSS-----MLHKALEGAIILETFPKTTVDVFALVLESG 150
NC S TF+T R + H D S L + E AI+ + P++ +D++ VL++
Sbjct: 73 NCQYSSATFSTGERKR-RPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQAD 131
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
G ++ A++A+ DAGI M D V + S + L D EE+ L +A +P
Sbjct: 132 GGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLP 191
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAK----LGKIMRSCLKEAA 255
+ ++ L + H + ++ AS L +++R ++EA+
Sbjct: 192 ASGQIALLEMDARLHEDHLEQVLEAAARASRDVHTVLDRVVRQHVQEAS 240
>sp|Q5RKV6|EXOS6_HUMAN Exosome complex component MTR3 OS=Homo sapiens GN=EXOSC6 PE=1 SV=1
Length = 272
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 122/248 (49%), Gaps = 20/248 (8%)
Query: 23 KTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE 82
+++PP +D + P +R + RP + R G ++ A GSAY E G TKV+ +V GPR+
Sbjct: 13 ESQPPQLYAADEEEA-PGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQ 71
Query: 83 SKKAMMYSNI------------GRLNCNVSYTTFATPVRGQ---GSDHKDFSSMLHKALE 127
++ GRL C+ FA R G + ++ + L +ALE
Sbjct: 72 AEGGERGGGPAGAGGEAPAALRGRLLCDFRRAPFAGRRRRAPPGGCEERELALALQEALE 131
Query: 128 GAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCL--- 184
A+ L +P+ ++V AL+LE GGS L ++ A++ALADAG+ MYDLV +S
Sbjct: 132 PAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSLAPGP 191
Query: 185 GKNLLIDPVLEEESYQDGSLMIACMPSRYEVT-QLTVTGEWSTPHFNEAMQLCLDASAKL 243
L+DP EE L +A MP +V L T + EA++L L+ +L
Sbjct: 192 APTWLLDPTRLEEERAAAGLTVALMPVLNQVAGLLGSGEGGLTESWAEAVRLGLEGCQRL 251
Query: 244 GKIMRSCL 251
+++ L
Sbjct: 252 YPVLQQSL 259
>sp|Q921I9|EXOS4_MOUSE Exosome complex component RRP41 OS=Mus musculus GN=Exosc4 PE=2 SV=3
Length = 245
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 106/229 (46%), Gaps = 12/229 (5%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRL 95
R D R + R R G A GSAY E GNTK + V+GP E + ++ + +
Sbjct: 13 RIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72
Query: 96 NCNVSYTTFATPVRGQGSDHKDFSS-----MLHKALEGAIILETFPKTTVDVFALVLESG 150
NC S TF+T R + H D S L + E AI+ + P++ +D++ VL++
Sbjct: 73 NCQYSSATFSTGERKR-RPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQAD 131
Query: 151 GSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMP 210
G ++ A++A+ DAGI M D V + S + L D EE+ L +A +P
Sbjct: 132 GGTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLP 191
Query: 211 SRYEVTQLTVTGEWSTPHFNEAMQLCLDASAK----LGKIMRSCLKEAA 255
+ ++ L + H + ++ A+ L ++R ++EA+
Sbjct: 192 ASGQIALLEMDSRLHEDHLEQVLEAAAQAARGVHTLLDLVVRQHVQEAS 240
>sp|Q9P7R3|MTR3_SCHPO Exosome complex component mtr3 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=mtr3 PE=3 SV=1
Length = 257
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 104/206 (50%), Gaps = 10/206 (4%)
Query: 41 SRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVS 100
+R +CR + + G A GS+Y E K+ +V GPR SK + + +LNC
Sbjct: 29 TRDVDRCRKIYLKLGWATKAVGSSYFESEKIKIACTVSGPRPSK-TFAFRSSAKLNCEFR 87
Query: 101 YTTFATPVRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG--SDLP 155
+ F+T VR Q + K +S M+ A+ +I+L +PK+++DV+ V+ES G + L
Sbjct: 88 LSPFSTSVRQGHVQTVEEKSYSQMIEAAISPSILLHLYPKSSIDVYIQVIESDGALATLA 147
Query: 156 VVISCASVALADAGIMMYDLV--ASVSVSCLGKNLLIDP--VLEEESYQDGSLMIACMPS 211
ISCAS A+ADA I DLV +SV + IDP V E GS+++ M S
Sbjct: 148 AAISCASSAIADANIDCIDLVTGSSVLFNPNTDEYWIDPDYVDERARAAKGSVVMGYMAS 207
Query: 212 RYEVTQLTVTGEWSTPHFNEAMQLCL 237
VTQ+ G S + + C+
Sbjct: 208 LGHVTQVWERGTCSPSRLSFLTEKCI 233
>sp|P46948|RRP41_YEAST Exosome complex component SKI6 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SKI6 PE=1 SV=1
Length = 246
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 94/173 (54%), Gaps = 15/173 (8%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNS----ASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSN 91
LR D R +++ R F + ++N+ A GS+Y E GN K+I V GP+E + K+ M ++
Sbjct: 12 LRLDGRRWNELRR--FES-SINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTS 68
Query: 92 IGRLNCNVSYTTFATPVRGQGSDHKDFSSMLH------KALEGAIILETFPKTTVDVFAL 145
LN +V+ T F+ R + S HK+ +L + E ++L +P+T +D+
Sbjct: 69 KALLNVSVNITKFSKFERSKSS-HKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIH 127
Query: 146 VLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEES 198
VLE G + +I+ ++AL DAGI M+D ++ +SV L+D EE+
Sbjct: 128 VLEQDGGIMGSLINGITLALIDAGISMFDYISGISVGLYDTTPLLDTNSLEEN 180
>sp|O42872|RRP41_SCHPO Exosome complex component ski6 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=ski6 PE=2 SV=1
Length = 242
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 104/232 (44%), Gaps = 6/232 (2%)
Query: 29 FSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE---SKK 85
F ++ LR D R + + R R G S +GSA+ E GNTKV+ V GP E K
Sbjct: 4 FEILSLEGLRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSK 63
Query: 86 AMMYSNIGRLNCNV-SYTTFATPVRGQGSDHKDFSSM-LHKALEGAIILETFPKTTVDVF 143
A + N+ S++T R + + L E I E +P++ + V+
Sbjct: 64 ARADRTFVNVEINIASFSTIDVKKRFKSDRRIQLQCLALQNTFEEIIQTELYPRSQISVY 123
Query: 144 ALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGS 203
VL+ G+ + I+ ++AL DAGI + D V + + ++L+D EES
Sbjct: 124 LHVLQDDGAVMASCINATTLALIDAGIPVKDFVCCSTAGIVESDMLLDLNSLEESALSW- 182
Query: 204 LMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAA 255
L +A + + +V + + + M + + S + M+S ++++A
Sbjct: 183 LTVAVLGNIKKVVYMQLETSMHLDYLESVMNMAIAGSEHIYNTMQSAVRQSA 234
>sp|C4LJY5|RNPH_CORK4 Ribonuclease PH OS=Corynebacterium kroppenstedtii (strain DSM 44385
/ CCUG 35717) GN=rph PE=3 SV=1
Length = 254
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 109/242 (45%), Gaps = 23/242 (9%)
Query: 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGR 94
D++R D R + RP G + +GS EFGNT+V+ + + S G
Sbjct: 3 DFVRADGRALDEMRPVRIVRGFTTNPAGSVLVEFGNTRVMCTASVEDRVPRFKKDSGEGW 62
Query: 95 LNCNVSYTTFATP-------VRG--QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFAL 145
L S AT +RG +G H + S ++ ++L AI L+ + T+ +
Sbjct: 63 LTAEYSMLPSATAERMPRESMRGKVKGRTH-EISRLVGRSLRAAIDLKALGENTIALDCD 121
Query: 146 VLESGGSDLPVVISCASVALADA-------GIMMYDL----VASVSVSCLGKNLLIDPVL 194
VL++ G I+ A VALADA G++ + VA+VSV + ++ +D
Sbjct: 122 VLQADGGTRTASITGAYVALADALTYLEAEGLVSQNALLPPVAAVSVGLIDGHVCLDLPY 181
Query: 195 EEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEA 254
EE+S + + + M E ++ TGE ST + MQ +DA+ K + KEA
Sbjct: 182 EEDSRAEVDMNV-VMTESGEFVEIQGTGEHSTFSREQLMQF-MDAAEKGCSELIRAQKEA 239
Query: 255 AS 256
S
Sbjct: 240 LS 241
>sp|Q84T68|EXOS5_ORYSJ Exosome complex exonuclease RRP46 homolog OS=Oryza sativa subsp.
japonica GN=RRP46 PE=1 SV=2
Length = 238
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 95/237 (40%), Gaps = 26/237 (10%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNC 97
R D R +Q RP ++ A GSA G+T V+ +V+GP+ + G
Sbjct: 5 RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRK------GENPE 58
Query: 98 NVSYTTFATPVRGQ-GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPV 156
S P+ GQ G K++ L + L+ +L P TT V V+ + GS LP
Sbjct: 59 KASIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPC 118
Query: 157 VISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYQDGSLMIACMPS----- 211
I+ AL AGI + L ++ L +I + E Q S P+
Sbjct: 119 AINACCAALVFAGIPLKHLAVAIGCGVLEDGEVILDTNKAEEQQLKSFAHLVFPNSRKSA 178
Query: 212 -------------RYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRSCLKEAA 255
R +T +T G S + ++ L AS+++ MR+ L++ A
Sbjct: 179 SSKEPNQKEEDSERGLITSIT-HGVMSEEDYFSCIERGLAASSRISDFMRTTLQKQA 234
>sp|Q7MPT3|RNPH_VIBVY Ribonuclease PH OS=Vibrio vulnificus (strain YJ016) GN=rph PE=3
SV=1
Length = 238
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 97/227 (42%), Gaps = 22/227 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RP+ R Q RP A GS EFGNTKV+ V PR K K +
Sbjct: 1 MRPNDRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 60
Query: 90 SNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L T G QG + ++ ++L + LE + + V V++
Sbjct: 61 AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLEAMGEFMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADAGIMMYD-----------LVASVSVSCLGKNLLIDPVLEEE 197
+ G IS ASVA+ADA + D VA+VSV LG+++L D E+
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGILGEDVLCDLEYVED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLG 244
S D + + M ++ ++ T E P +E + L L SAK G
Sbjct: 181 SAADTDMNV-VMTEEGKMIEIQGTAE-GEPFSHEQL-LALLESAKKG 224
>sp|Q8DDX4|RNPH_VIBVU Ribonuclease PH OS=Vibrio vulnificus (strain CMCP6) GN=rph PE=3
SV=1
Length = 238
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 97/227 (42%), Gaps = 22/227 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RP+ R Q RP A GS EFGNTKV+ V PR K K +
Sbjct: 1 MRPNDRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGKGWVT 60
Query: 90 SNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L T G QG + ++ ++L + LE + + V V++
Sbjct: 61 AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLEAMGEFMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADAGIMMYD-----------LVASVSVSCLGKNLLIDPVLEEE 197
+ G IS ASVA+ADA + D VA+VSV LG+++L D E+
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGILGEDVLCDLEYVED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLG 244
S D + + M ++ ++ T E P +E + L L SAK G
Sbjct: 181 SAADTDMNV-VMTEEGKMIEIQGTAE-GEPFSHEQL-LALLESAKKG 224
>sp|Q9KVD6|RNPH_VIBCH Ribonuclease PH OS=Vibrio cholerae serotype O1 (strain ATCC 39315 /
El Tor Inaba N16961) GN=rph PE=3 SV=2
Length = 238
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 99/227 (43%), Gaps = 22/227 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RPD+R Q RP A GS EFGNTKV+ + PR K K +
Sbjct: 1 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVPRWLKGQGKGWVT 60
Query: 90 SNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L T G QG + ++ ++L + LE + + V V++
Sbjct: 61 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA-------GIM----MYDLVASVSVSCLGKNLLIDPVLEEE 197
+ G I+ ASVALADA G + M VA+VSV LG+++L D E+
Sbjct: 121 ADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEYVED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLG 244
S D + + M ++ ++ T E P +E + L L A AK G
Sbjct: 181 SAADTDMNV-VMTEEGKMIEIQGTAE-GEPFSHEQL-LELLAVAKKG 224
>sp|Q11U61|PNP_CYTH3 Polyribonucleotide nucleotidyltransferase OS=Cytophaga hutchinsonii
(strain ATCC 33406 / NCIMB 9469) GN=pnp PE=3 SV=1
Length = 717
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 85/175 (48%), Gaps = 13/175 (7%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV-FGPRESKKAM---MYSNIG 93
R D R Q RP + G + SA GSA G T+ + +V FG R ++ + M+S
Sbjct: 322 RLDGRSLEQIRPIWSEVGYLPSAHGSAIFTRGETQSLTTVTFGTRLDEQMIDSAMFSGNN 381
Query: 94 RLNCNVSYTTFAT----PVRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
+L + ++ F+T P RG G ++ ++A++ + E T+ + + +LES
Sbjct: 382 KLMLHYNFPGFSTGEVKPNRGPGRREVGHGNLAYRAIKKVMPPEIENPYTIRIVSDILES 441
Query: 150 GGSDLPVVISCASVALADAGIMMYDLVASVSVSCL-----GKNLLIDPVLEEESY 199
GS + ++AL DAGI + V+ +++ + G+ ++ +L +E +
Sbjct: 442 NGSSSMATVCAGTLALMDAGIKIKAPVSGIAMGLITDTKTGRWAVLSDILGDEDH 496
>sp|B1HR13|PNP_LYSSC Polyribonucleotide nucleotidyltransferase OS=Lysinibacillus
sphaericus (strain C3-41) GN=pnp PE=3 SV=1
Length = 704
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 80/190 (42%), Gaps = 20/190 (10%)
Query: 10 TAKATYSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFG 69
T K Y+ +D + + + D +RPD R + RP TG + GS G
Sbjct: 289 TMKQVYTILD--KMVKDEVRRQITEDKIRPDGRKLDEIRPLSSETGLLQRTHGSGLFTRG 346
Query: 70 NTKV-------------IVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHK 116
T+ I+ G ESK+ M + N + + + P+RG G
Sbjct: 347 QTQALSICTLGALGDVQIIDGLGVEESKRFMHHYNFPQFSVGET-----GPIRGPGRREI 401
Query: 117 DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLV 176
++ +ALE I E+ T+ + VLES GS I +++A+ DAG+ + V
Sbjct: 402 GHGALGERALEAVIPDESVFPYTIRCVSEVLESNGSTSQASICASTLAMMDAGVPLKAPV 461
Query: 177 ASVSVSCLGK 186
A +++ + K
Sbjct: 462 AGIAMGLIKK 471
>sp|B9MR54|PNP_CALBD Polyribonucleotide nucleotidyltransferase OS=Caldicellulosiruptor
bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) GN=pnp
PE=3 SV=1
Length = 701
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 103/240 (42%), Gaps = 26/240 (10%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI-VSVFGPR------------ESK 84
RPD R F + RP + G + GSA + G T+V+ V+ G + E+K
Sbjct: 313 RPDGRKFDEIRPLYAEIGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372
Query: 85 KAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILE-TFPKTTVDVF 143
+ M + N + S PVRG G ++ +ALE I E FP T+ +
Sbjct: 373 RYMHHYNFPPFSTGES-----KPVRGPGRREIGHGALAERALEPVIPSEDEFP-YTIRLV 426
Query: 144 ALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKN-----LLIDPVLEEES 198
+ VL S GS + +++AL DAG+ + VA +S+ + K+ LL D E+
Sbjct: 427 SEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKDDGSFILLTDIQGIEDF 486
Query: 199 YQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNE-AMQLCLDASAKLGKIMRSCLKEAASD 257
+ D +A QL + T E A+ +A K+ M++ + + S+
Sbjct: 487 FGDMDFKVAGTREGITAIQLDIKIHGLTKEIIEKALYQAREARLKILDFMQTVIDKPRSE 546
>sp|Q2JRJ9|RNPH_SYNJA Ribonuclease PH OS=Synechococcus sp. (strain JA-3-3Ab) GN=rph PE=3
SV=1
Length = 242
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 95/234 (40%), Gaps = 21/234 (8%)
Query: 36 WLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRL 95
W RPD R Q RP F+ A GS +FG+T V+ + E + + G L
Sbjct: 3 WQRPDGRTAAQLRPISFQRHFTRYAPGSVLVKFGDTHVLCTASVAEEVPPFLQNTGQGWL 62
Query: 96 NCNVSYTTFATPVRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVLES 149
AT R K + ++ ++L A+ T+ V A VL++
Sbjct: 63 TAEYRMLPTATQQRQPRETLKVSGRTAEIQRLIGRSLRAALDFHKLGSRTITVDADVLQA 122
Query: 150 GGSDLPVVISCASVALADAGIMMY--------------DLVASVSVSCLGKNLLIDPVLE 195
GS I+ VAL DA +Y VA++SV + +L+D E
Sbjct: 123 DGSTRTAAITGGYVALHDAITWLYKQGLLDPAQGSPLRQQVAALSVGIVRGEVLVDLCYE 182
Query: 196 EESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRS 249
E+S + + I M + + ++ T E ++ +Q+ A A + +++R+
Sbjct: 183 EDSQAEVDMNI-VMNEQGALIEIQGTAEAGCFDRSQLLQMLDMAQAGIQELLRA 235
>sp|Q87T93|RNPH_VIBPA Ribonuclease PH OS=Vibrio parahaemolyticus serotype O3:K6 (strain
RIMD 2210633) GN=rph PE=3 SV=1
Length = 238
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 96/227 (42%), Gaps = 22/227 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI----VSVFGPRESK---KAMMY 89
+RP+ R Q RP A GS EFGNTKV+ V PR K + +
Sbjct: 1 MRPNDRKADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEESVPRWLKGQGRGWVT 60
Query: 90 SNIGRLNCNVSYTTFATPVRG-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
+ G L T G QG + ++ ++L + L+ + + V V++
Sbjct: 61 AEYGMLPRATHSRTRREAANGKQGGRTMEIQRLIARSLRAVVDLQAMGEFMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADAGIMMYD-----------LVASVSVSCLGKNLLIDPVLEEE 197
+ G IS ASVA+ADA + D VA+VSV LG +L D E+
Sbjct: 121 ADGGTRTASISGASVAMADAFQHLVDSGKLKANPMKGHVAAVSVGLLGDEVLCDLEYVED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLG 244
S D + + M ++ ++ T E P +E + L+ SAK+G
Sbjct: 181 SAADTDMNV-VMTEEGKMIEIQGTAE-GEPFSHEQLMALLE-SAKVG 224
>sp|B7VHJ7|RNPH_VIBSL Ribonuclease PH OS=Vibrio splendidus (strain LGP32) GN=rph PE=3
SV=1
Length = 238
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 92/232 (39%), Gaps = 20/232 (8%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RP+ R Q RP A GS EFGNTKV+ + + + G +
Sbjct: 1 MRPNDRAVDQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEENVPRWLKGQGKGWVT 60
Query: 97 CNVSYTTFATPVRG--------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
AT R QG + ++ ++L + L+ + + V V++
Sbjct: 61 AEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAVVDLKVMGEIMITVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA-------GIM----MYDLVASVSVSCLGKNLLIDPVLEEE 197
+ G IS ASVA+ADA G + M VA+VSV +G L D E+
Sbjct: 121 ADGGTRTASISGASVAMADAINSLLASGKLKKNPMKGHVAAVSVGIVGAQALCDLEYVED 180
Query: 198 SYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQLCLDASAKLGKIMRS 249
S D + + M ++ ++ T E E MQL A+ + I+ +
Sbjct: 181 SAADTDMNV-VMTEDGKMIEIQGTAEGEPFSHEELMQLLALANKGIADIVEA 231
>sp|B2V890|RNPH_SULSY Ribonuclease PH OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=rph
PE=3 SV=1
Length = 257
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 102/241 (42%), Gaps = 29/241 (12%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RPD R Q RP A GS EFGNTKVIV+ E K G+
Sbjct: 1 MRPDGRKPAQLRPIKIIRDFNIYAEGSVLIEFGNTKVIVT--ASVEDKVPPFLKGTGQGW 58
Query: 97 CNVSYT---------TFATPVRG--QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFAL 145
Y+ + VRG G H + ++ ++L A+ L+ + T+ +
Sbjct: 59 ITAEYSMIPRASETRSLREVVRGSPSGRTH-EIQRLIGRSLRAAVDLKKLGEKTIWIDCD 117
Query: 146 VLESGGSDLPVVISCASVALADAGIM-----------MYDLVASVSVSCLGKNLLIDPVL 194
V+++ G I+ A +A+ADA I + D VA++SV + +++D
Sbjct: 118 VIQADGGTRVASITGAFIAVADACIKLTKQNLVKANPLKDYVAAISVGKVRNEIVLDLNY 177
Query: 195 EEESYQDGSLMIACMPSRYEVTQLTVTGE---WSTPHFNEAMQLCLDASAKLGKIMRSCL 251
E+S + + M + E ++ TGE +S FN+ ++ +L KI + +
Sbjct: 178 TEDSNAQVDMNL-VMTGKGEFVEIGATGEENTFSQEDFNKMLEYGKSGIERLIKIQKEFI 236
Query: 252 K 252
+
Sbjct: 237 E 237
>sp|Q15MV7|RNPH_PSEA6 Ribonuclease PH OS=Pseudoalteromonas atlantica (strain T6c / ATCC
BAA-1087) GN=rph PE=3 SV=1
Length = 237
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 91/220 (41%), Gaps = 21/220 (9%)
Query: 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLN 96
+RP+ R Q RP A GS EFGNTKV+ + + M G +N
Sbjct: 1 MRPNDRTASQIRPVTITRNFTCHAEGSVLIEFGNTKVLCNASVTEGVPRFMKGQGKGWVN 60
Query: 97 CNVSYTTFATPVRG--------QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLE 148
S AT R QG + ++ ++L A+ L+ + T+ V V++
Sbjct: 61 AEYSMLPRATHTRSDREAARGKQGGRTLEIQRLIARSLRAALDLKLLGENTIVVDCDVIQ 120
Query: 149 SGGSDLPVVISCASVALADA-------GIM----MYDLVASVSVSCLGKNLLIDPVLEEE 197
+ G I+ A VAL DA GI+ M ++A++SV N + D E+
Sbjct: 121 ADGGTRTASITGACVALVDALTWMRSKGIIKTNPMKHMIAAISVGIYKGNAIADLEYTED 180
Query: 198 SYQDGSLMIACMPSRYEV-TQLTVTGE-WSTPHFNEAMQL 235
S + + + + + Q T GE +S +E ++L
Sbjct: 181 SEAETDMNVVMTDTGKMIEVQGTAEGEPFSIEEMHEMLEL 220
>sp|A4XL64|PNP_CALS8 Polyribonucleotide nucleotidyltransferase OS=Caldicellulosiruptor
saccharolyticus (strain ATCC 43494 / DSM 8903) GN=pnp
PE=3 SV=1
Length = 701
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 75/164 (45%), Gaps = 20/164 (12%)
Query: 38 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVI-VSVFGPR------------ESK 84
RPD R F + RP + G + GSA + G T+V+ V+ G + E+K
Sbjct: 313 RPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEMQFLDGLEEEEAK 372
Query: 85 KAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSSMLHKALEGAIILE-TFPKTTVDVF 143
+ M + N + S PVRG G ++ +ALE I E FP T+ +
Sbjct: 373 RYMHHYNFPPYSTGES-----KPVRGPGRREIGHGALAERALEPVIPSEDEFP-YTIRLV 426
Query: 144 ALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKN 187
+ VL S GS + +++AL DAG+ + VA +S+ + K
Sbjct: 427 SEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKE 470
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.130 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,125,428
Number of Sequences: 539616
Number of extensions: 3676583
Number of successful extensions: 10348
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 635
Number of HSP's that attempted gapping in prelim test: 9501
Number of HSP's gapped (non-prelim): 1099
length of query: 260
length of database: 191,569,459
effective HSP length: 115
effective length of query: 145
effective length of database: 129,513,619
effective search space: 18779474755
effective search space used: 18779474755
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)