BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024907
(260 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CKD|A Chain A, Crystal Structure Of Ml2640 From Mycobacterium Leprae
pdb|2CKD|B Chain B, Crystal Structure Of Ml2640 From Mycobacterium Leprae
pdb|2UYO|A Chain A, Crystal Structure Of Ml2640c From Mycobacterium Leprae In
An Hexagonal Crystal Form
pdb|2UYQ|A Chain A, Crystal Structure Of Ml2640c From Mycobacterium Leprae In
Complex With S-Adenosylmethionine
Length = 310
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 67/130 (51%), Gaps = 6/130 (4%)
Query: 33 HYCLTTKFIDDKLLRTVNHMDGLKQVVLLTDGMDTRPYRLNWPTSTIIFDISPERIFKIS 92
+ + T F D V +DG++Q V+L G+D+R YRL+WPT T +++I ++
Sbjct: 83 YQAVRTNFFDTYFNNAV--IDGIRQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYK 140
Query: 93 AEKLEGVGAKIPRSCLFLHVPLE-SSNIQQALRAKGFNGNRPSVWAIQGLPVMTLASFED 151
+ L G + + VP++ + ALR+ GF+ + + W +GL + A+ +D
Sbjct: 141 STTLAEHG--VTPTADRREVPIDLRQDWPPALRSAGFDPSARTAWLAEGLLMYLPATAQD 198
Query: 152 VLLL-VGSLA 160
L +G L+
Sbjct: 199 GLFTEIGGLS 208
>pdb|3CQI|A Chain A, Crystal Structure Of L-Xylulose-5-Phosphate 3-Epimerase
Ulae (Form B) Complex With Sulfate
pdb|3CQI|B Chain B, Crystal Structure Of L-Xylulose-5-Phosphate 3-Epimerase
Ulae (Form B) Complex With Sulfate
pdb|3CQJ|A Chain A, Crystal Structure Of L-Xylulose-5-Phosphate 3-Epimerase
Ulae (Form B) Complex With Zn2+
pdb|3CQJ|B Chain B, Crystal Structure Of L-Xylulose-5-Phosphate 3-Epimerase
Ulae (Form B) Complex With Zn2+
pdb|3CQK|A Chain A, Crystal Structure Of L-xylulose-5-phosphate 3-epimerase
Ulae (form B) Complex With Zn2+ And Sulfate
pdb|3CQK|B Chain B, Crystal Structure Of L-xylulose-5-phosphate 3-epimerase
Ulae (form B) Complex With Zn2+ And Sulfate
Length = 295
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 12/99 (12%)
Query: 54 GLKQVVLLTDGMDTRPYRLNWPTSTIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVP 113
G V + D D R RL+W +R+ ++A + G ++P CL H
Sbjct: 43 GFDFVEMSVDETDERLSRLDWSRE--------QRLALVNA--IVETGVRVPSMCLSAHRR 92
Query: 114 LESSNIQQALRAKGFNGNRPSVWAIQ--GLPVMTLASFE 150
+ A+RA+G R ++ Q G+ V+ LA ++
Sbjct: 93 FPLGSEDDAVRAQGLEIMRKAIQFAQDVGIRVIQLAGYD 131
>pdb|3CQH|A Chain A, Crystal Structure Of L-Xylulose-5-Phosphate 3-Epimerase
Ulae From The Anaerobic L-Ascorbate Utilization Pathway
Of Escherichia Coli
pdb|3CQH|B Chain B, Crystal Structure Of L-Xylulose-5-Phosphate 3-Epimerase
Ulae From The Anaerobic L-Ascorbate Utilization Pathway
Of Escherichia Coli
Length = 295
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 12/99 (12%)
Query: 54 GLKQVVLLTDGMDTRPYRLNWPTSTIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVP 113
G V D D R RL+W +R+ ++A + G ++P CL H
Sbjct: 43 GFDFVEXSVDETDERLSRLDWSRE--------QRLALVNA--IVETGVRVPSXCLSAHRR 92
Query: 114 LESSNIQQALRAKGFNGNRPSVWAIQ--GLPVMTLASFE 150
+ A+RA+G R ++ Q G+ V+ LA ++
Sbjct: 93 FPLGSEDDAVRAQGLEIXRKAIQFAQDVGIRVIQLAGYD 131
>pdb|1D5T|A Chain A, Guanine Nucleotide Dissociation Inhibitor, Alpha-Isoform
Length = 433
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 167 LGELPAWLAETE--FGNKSTTEKWMDKLFMSNGFGVGMVSYKEVA 209
LGELP A +G K +D + M NG VG+ S EVA
Sbjct: 233 LGELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVA 277
>pdb|1LV0|A Chain A, Crystal Structure Of The Rab Effector Guanine Nucleotide
Dissociation Inhibitor (Gdi) In Complex With A
Geranylgeranyl (Gg) Peptide
Length = 449
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 167 LGELPAWLAETE--FGNKSTTEKWMDKLFMSNGFGVGMVSYKEVA 209
LGELP A +G K +D + M NG VG+ S EVA
Sbjct: 233 LGELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVA 277
>pdb|1GND|A Chain A, Guanine Nucleotide Dissociation Inhibitor, Alpha-Isoform
Length = 447
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 167 LGELPAWLAETE--FGNKSTTEKWMDKLFMSNGFGVGMVSYKEVASSLGKELAPGYYKNI 224
LGELP A +G K +D + M NG VG+ S EVA P Y +
Sbjct: 231 LGELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYVPDR 290
Query: 225 LFLAEQL 231
+ A Q+
Sbjct: 291 VRKAGQV 297
>pdb|3ACL|A Chain A, Crystal Structure Of Human Pirin In Complex With Triphenyl
Compound
Length = 296
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 91 ISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPSVWAIQGLPVMTLASFE 150
+S E+ EGVGA++ RS + P E N+ L F G RP G P FE
Sbjct: 18 LSREQSEGVGARVRRS---IGRP-ELKNLDPFLLFDEFKGGRPG-----GFPDHPHRGFE 68
Query: 151 DV--LLLVGSLAMNK-CLFLGEL 170
V LL GS+A C G++
Sbjct: 69 TVSYLLEGGSMAHEDFCGHTGKM 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,606,704
Number of Sequences: 62578
Number of extensions: 297478
Number of successful extensions: 570
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 565
Number of HSP's gapped (non-prelim): 10
length of query: 260
length of database: 14,973,337
effective HSP length: 97
effective length of query: 163
effective length of database: 8,903,271
effective search space: 1451233173
effective search space used: 1451233173
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)