Query 024907
Match_columns 260
No_of_seqs 209 out of 1130
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 08:22:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024907.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024907hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00027 mthyl_TIGR00027 meth 100.0 3.7E-46 8.1E-51 335.2 20.6 211 2-215 14-260 (260)
2 COG3315 O-Methyltransferase in 100.0 4.8E-46 1E-50 339.9 20.7 216 2-219 28-279 (297)
3 PF04072 LCM: Leucine carboxyl 100.0 2.5E-38 5.3E-43 270.3 4.9 155 3-157 12-183 (183)
4 KOG2918 Carboxymethyl transfer 99.9 4.4E-26 9.5E-31 205.9 14.0 205 6-210 39-283 (335)
5 PF04672 Methyltransf_19: S-ad 98.0 7E-05 1.5E-09 67.8 10.4 126 39-170 54-190 (267)
6 TIGR03438 probable methyltrans 96.5 0.03 6.4E-07 51.4 10.7 108 55-169 64-176 (301)
7 PF12147 Methyltransf_20: Puta 96.0 0.16 3.4E-06 46.9 12.6 159 32-200 110-293 (311)
8 PF00891 Methyltransf_2: O-met 95.8 0.074 1.6E-06 46.7 9.4 97 53-170 99-200 (241)
9 TIGR02716 C20_methyl_CrtF C-20 94.8 0.45 9.8E-06 43.4 11.6 104 54-170 149-255 (306)
10 PRK15451 tRNA cmo(5)U34 methyl 94.7 0.98 2.1E-05 40.0 13.3 162 55-237 57-227 (247)
11 PRK14103 trans-aconitate 2-met 94.6 0.76 1.6E-05 40.7 12.2 195 33-256 10-238 (255)
12 PF12847 Methyltransf_18: Meth 94.4 0.19 4E-06 38.2 6.9 103 56-170 3-111 (112)
13 TIGR03439 methyl_EasF probable 94.2 0.72 1.6E-05 43.0 11.6 111 55-172 77-201 (319)
14 TIGR00740 methyltransferase, p 93.6 1.8 3.9E-05 37.9 12.5 159 56-238 55-225 (239)
15 PTZ00098 phosphoethanolamine N 93.3 2.9 6.3E-05 37.5 13.5 100 55-168 53-154 (263)
16 PF13649 Methyltransf_25: Meth 92.4 0.47 1E-05 35.7 6.1 93 58-163 1-100 (101)
17 COG4106 Tam Trans-aconitate me 92.1 0.34 7.3E-06 43.1 5.6 119 32-174 10-133 (257)
18 TIGR02021 BchM-ChlM magnesium 91.8 4.1 9E-05 35.0 12.1 133 55-201 56-202 (219)
19 PRK01683 trans-aconitate 2-met 91.0 10 0.00022 33.3 15.0 190 33-249 12-231 (258)
20 PF05401 NodS: Nodulation prot 90.4 1.2 2.5E-05 39.0 7.2 111 44-170 34-146 (201)
21 TIGR00477 tehB tellurite resis 90.0 3.4 7.4E-05 35.2 9.8 100 56-170 32-134 (195)
22 PLN03075 nicotianamine synthas 89.5 2.8 6.1E-05 38.7 9.3 106 54-171 123-234 (296)
23 PRK11036 putative S-adenosyl-L 89.0 3.7 8E-05 36.4 9.6 101 55-168 45-147 (255)
24 KOG1975 mRNA cap methyltransfe 87.9 4.9 0.00011 37.9 9.7 113 55-172 118-239 (389)
25 PRK11207 tellurite resistance 86.9 5.1 0.00011 34.2 8.9 97 56-166 32-130 (197)
26 PF03848 TehB: Tellurite resis 86.1 1.6 3.5E-05 37.8 5.3 101 55-169 31-132 (192)
27 PRK15068 tRNA mo(5)U34 methylt 84.9 6.3 0.00014 36.6 9.0 102 56-169 124-225 (322)
28 TIGR00452 methyltransferase, p 84.7 14 0.00031 34.3 11.2 102 56-169 123-224 (314)
29 PRK12335 tellurite resistance 84.3 6.8 0.00015 35.5 8.8 97 56-167 122-220 (287)
30 KOG2361 Predicted methyltransf 84.0 3.1 6.8E-05 37.5 6.2 136 57-200 74-232 (264)
31 PLN02781 Probable caffeoyl-CoA 83.5 14 0.00031 32.5 10.4 108 54-171 68-179 (234)
32 PRK08317 hypothetical protein; 83.4 26 0.00057 29.5 14.4 178 55-250 20-223 (241)
33 PRK00121 trmB tRNA (guanine-N( 83.3 12 0.00026 32.0 9.5 129 55-202 41-178 (202)
34 PRK00377 cbiT cobalt-precorrin 83.1 14 0.0003 31.4 9.8 125 56-205 42-170 (198)
35 cd02440 AdoMet_MTases S-adenos 82.9 14 0.00029 25.9 8.9 99 58-169 2-103 (107)
36 PLN02396 hexaprenyldihydroxybe 82.1 11 0.00023 35.2 9.3 123 36-171 107-236 (322)
37 PLN02244 tocopherol O-methyltr 81.8 12 0.00025 35.0 9.5 102 55-168 119-221 (340)
38 PF02353 CMAS: Mycolic acid cy 81.5 6 0.00013 35.9 7.3 117 39-170 49-166 (273)
39 PF03291 Pox_MCEL: mRNA cappin 79.5 4.9 0.00011 37.6 6.1 132 35-172 44-188 (331)
40 PLN02336 phosphoethanolamine N 77.1 15 0.00033 35.5 9.1 100 56-168 39-140 (475)
41 PRK07580 Mg-protoporphyrin IX 76.9 33 0.00071 29.3 10.2 99 55-168 64-164 (230)
42 PLN02366 spermidine synthase 76.6 27 0.00058 32.4 10.1 108 53-168 90-204 (308)
43 PLN02336 phosphoethanolamine N 76.5 61 0.0013 31.3 13.0 135 55-204 267-414 (475)
44 COG4301 Uncharacterized conser 76.4 26 0.00056 32.1 9.4 111 53-173 77-198 (321)
45 TIGR03587 Pse_Me-ase pseudamin 74.0 32 0.00069 29.6 9.3 109 39-170 32-143 (204)
46 PRK00811 spermidine synthase; 72.7 35 0.00076 30.9 9.7 108 53-169 75-190 (283)
47 PRK06202 hypothetical protein; 72.7 44 0.00096 28.9 10.0 102 54-170 60-167 (232)
48 PRK11873 arsM arsenite S-adeno 71.2 22 0.00047 31.6 7.9 100 56-168 79-181 (272)
49 PF03059 NAS: Nicotianamine sy 70.4 8.5 0.00018 35.3 5.1 109 56-174 122-234 (276)
50 PF08003 Methyltransf_9: Prote 68.2 48 0.001 31.0 9.5 115 43-170 105-219 (315)
51 PRK11705 cyclopropane fatty ac 67.8 46 0.00099 31.7 9.7 96 56-169 169-266 (383)
52 PF08242 Methyltransf_12: Meth 67.4 1.4 3E-05 32.8 -0.6 30 135-166 69-99 (99)
53 TIGR03704 PrmC_rel_meth putati 65.0 1E+02 0.0022 27.4 11.4 48 150-208 196-243 (251)
54 PF10294 Methyltransf_16: Puta 64.7 23 0.0005 29.6 6.3 107 55-169 46-155 (173)
55 PLN02589 caffeoyl-CoA O-methyl 64.4 95 0.0021 27.8 10.5 109 54-171 79-191 (247)
56 smart00828 PKS_MT Methyltransf 62.9 35 0.00075 29.1 7.3 134 57-205 2-145 (224)
57 PF07091 FmrO: Ribosomal RNA m 62.7 15 0.00032 33.3 4.9 149 39-202 90-241 (251)
58 PLN02233 ubiquinone biosynthes 61.0 1E+02 0.0023 27.4 10.2 106 55-170 74-183 (261)
59 PF13847 Methyltransf_31: Meth 57.1 51 0.0011 26.3 7.0 102 55-169 4-109 (152)
60 TIGR02752 MenG_heptapren 2-hep 55.1 1.3E+02 0.0029 25.6 10.3 101 56-169 47-151 (231)
61 KOG4300 Predicted methyltransf 54.9 1.6E+02 0.0034 26.4 10.0 106 54-171 76-184 (252)
62 TIGR01983 UbiG ubiquinone bios 54.4 1E+02 0.0023 26.0 8.8 121 34-169 26-148 (224)
63 PRK00536 speE spermidine synth 54.3 1.6E+02 0.0034 26.7 10.2 105 52-161 70-193 (262)
64 PF08241 Methyltransf_11: Meth 53.9 47 0.001 23.3 5.7 91 60-168 2-95 (95)
65 PLN02585 magnesium protoporphy 53.4 1.9E+02 0.0041 26.8 12.9 132 56-201 146-295 (315)
66 TIGR03840 TMPT_Se_Te thiopurin 52.9 1.5E+02 0.0033 25.6 10.7 101 56-168 36-150 (213)
67 PRK10258 biotin biosynthesis p 51.6 64 0.0014 28.1 7.2 96 55-170 43-140 (251)
68 PF01596 Methyltransf_3: O-met 48.1 88 0.0019 27.1 7.3 108 54-171 45-156 (205)
69 PRK04457 spermidine synthase; 47.8 1.9E+02 0.0041 25.8 9.7 106 54-170 66-177 (262)
70 TIGR02072 BioC biotin biosynth 47.1 1.7E+02 0.0037 24.5 9.1 96 56-170 36-135 (240)
71 smart00138 MeTrc Methyltransfe 45.1 2.3E+02 0.0049 25.3 9.8 38 133-170 204-242 (264)
72 PRK11805 N5-glutamine S-adenos 40.7 2.9E+02 0.0063 25.3 10.5 117 40-171 120-264 (307)
73 COG2230 Cfa Cyclopropane fatty 40.7 3E+02 0.0064 25.4 10.3 111 41-167 61-173 (283)
74 COG3747 Phage terminase, small 40.6 9 0.00019 31.9 -0.1 63 191-258 88-154 (160)
75 PLN02490 MPBQ/MSBQ methyltrans 40.2 2.9E+02 0.0062 26.0 9.9 131 56-204 115-256 (340)
76 COG4262 Predicted spermidine s 39.9 51 0.0011 31.9 4.8 59 39-99 274-338 (508)
77 TIGR00091 tRNA (guanine-N(7)-) 39.9 1.3E+02 0.0028 25.3 7.0 106 55-170 17-132 (194)
78 PHA03411 putative methyltransf 39.2 16 0.00034 33.6 1.3 30 57-86 207-239 (279)
79 PF13489 Methyltransf_23: Meth 38.5 75 0.0016 24.9 5.1 104 41-171 9-116 (161)
80 TIGR00537 hemK_rel_arch HemK-r 38.1 2.2E+02 0.0049 23.3 11.8 120 56-202 21-162 (179)
81 PHA03412 putative methyltransf 38.1 19 0.0004 32.4 1.5 31 57-87 195-228 (241)
82 PRK13255 thiopurine S-methyltr 37.7 2.7E+02 0.0059 24.1 9.3 99 56-165 39-150 (218)
83 TIGR01934 MenG_MenH_UbiE ubiqu 37.1 2.4E+02 0.0053 23.4 11.0 100 55-170 40-144 (223)
84 TIGR00438 rrmJ cell division p 35.7 1.9E+02 0.0041 24.0 7.4 101 55-169 33-145 (188)
85 PF01739 CheR: CheR methyltran 34.8 48 0.001 28.6 3.5 38 134-171 138-176 (196)
86 COG3598 RepA RecA-family ATPas 34.2 37 0.0008 32.2 2.9 129 39-169 80-238 (402)
87 PRK10611 chemotaxis methyltran 32.8 45 0.00097 30.6 3.2 38 134-171 225-263 (287)
88 PRK11783 rlmL 23S rRNA m(2)G24 32.3 2.1E+02 0.0045 29.6 8.3 127 56-204 540-679 (702)
89 PLN02476 O-methyltransferase 31.7 4E+02 0.0088 24.3 11.6 109 53-171 117-229 (278)
90 PF01209 Ubie_methyltran: ubiE 30.8 2.1E+02 0.0046 25.1 7.1 102 56-170 49-154 (233)
91 PF06080 DUF938: Protein of un 30.6 2.8E+02 0.0061 24.3 7.6 167 40-217 13-188 (204)
92 TIGR00417 speE spermidine synt 30.3 3.9E+02 0.0085 23.7 9.3 109 53-170 71-186 (270)
93 PRK00216 ubiE ubiquinone/menaq 30.1 3.3E+02 0.0072 22.8 10.7 101 56-169 53-158 (239)
94 PF11899 DUF3419: Protein of u 29.9 1.4E+02 0.0029 28.7 6.0 51 117-169 282-333 (380)
95 PRK00107 gidB 16S rRNA methylt 29.7 3.5E+02 0.0075 22.9 13.4 116 56-201 47-165 (187)
96 PF06557 DUF1122: Protein of u 28.3 1.3E+02 0.0027 25.7 4.8 57 143-200 59-118 (170)
97 PRK10329 glutaredoxin-like pro 28.1 2.1E+02 0.0046 20.7 5.6 47 107-154 26-74 (81)
98 PRK07402 precorrin-6B methylas 27.1 3.7E+02 0.008 22.4 10.3 100 55-171 41-143 (196)
99 PRK09019 translation initiatio 27.0 3.1E+02 0.0068 21.5 6.7 61 132-201 44-104 (108)
100 TIGR02469 CbiT precorrin-6Y C5 26.4 2.7E+02 0.0058 20.5 10.8 100 55-170 20-122 (124)
101 PRK05134 bifunctional 3-demeth 26.2 4.1E+02 0.0088 22.6 9.2 101 56-170 50-151 (233)
102 PF15076 DUF4543: Domain of un 26.2 29 0.00062 25.0 0.6 28 231-258 29-56 (75)
103 PF04019 DUF359: Protein of un 26.1 2.1E+02 0.0045 22.9 5.6 48 117-172 48-95 (121)
104 TIGR00406 prmA ribosomal prote 25.6 5E+02 0.011 23.4 11.2 113 36-169 144-258 (288)
105 PRK05904 coproporphyrinogen II 25.6 4.3E+02 0.0093 24.7 8.6 39 132-170 57-96 (353)
106 COG3845 ABC-type uncharacteriz 24.9 4.5E+02 0.0097 26.3 8.6 84 83-168 112-195 (501)
107 PRK01581 speE spermidine synth 24.8 6.3E+02 0.014 24.3 10.0 108 52-169 148-267 (374)
108 COG1352 CheR Methylase of chem 23.8 1.7E+02 0.0037 26.6 5.3 36 135-170 205-241 (268)
109 TIGR03533 L3_gln_methyl protei 23.7 5.4E+02 0.012 23.1 12.4 117 40-171 108-252 (284)
110 PRK14968 putative methyltransf 23.5 3.9E+02 0.0085 21.5 13.3 123 56-201 25-169 (188)
111 PF05185 PRMT5: PRMT5 arginine 23.4 2.6E+02 0.0057 27.3 6.8 99 56-167 188-294 (448)
112 PRK08446 coproporphyrinogen II 22.1 6E+02 0.013 23.6 8.8 40 131-170 51-91 (350)
113 COG0635 HemN Coproporphyrinoge 22.0 4.5E+02 0.0097 25.4 8.1 40 131-170 87-130 (416)
114 PF13578 Methyltransf_24: Meth 21.4 1.4E+02 0.003 22.1 3.6 95 63-169 7-104 (106)
115 COG0421 SpeE Spermidine syntha 20.7 2E+02 0.0043 26.4 5.1 46 53-99 75-123 (282)
116 PRK06922 hypothetical protein; 20.2 3.4E+02 0.0075 28.1 7.1 102 56-169 420-537 (677)
No 1
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=100.00 E-value=3.7e-46 Score=335.17 Aligned_cols=211 Identities=25% Similarity=0.437 Sum_probs=177.9
Q ss_pred CCCCCCCCccCHhhhhcCCCCCcc------hh-------h----hhhHHHHHHHHHHHHHHHHHhhccCCcceEEEeCCC
Q 024907 2 CNAYAEPLFVDPYAGCLVPPDVQM------DL-------K----KYSHHYCLTTKFIDDKLLRTVNHMDGLKQVVLLTDG 64 (260)
Q Consensus 2 ~s~r~~~l~~Dp~A~~~~~~~~~~------~~-------~----~~~~~~~~Rtr~iDd~l~~~~~~~~g~~QVV~LGaG 64 (260)
.|+++++||+||||..|+++.++. .+ . .+..++++||++||++++++++ .|++||||||||
T Consensus 14 es~r~~~l~~Dp~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rtr~~D~~i~~~~~--~g~~qvV~LGaG 91 (260)
T TIGR00027 14 ETQRPDRLFRDPYAAAFLGAAGRAAMPLDGLLRADAGAYDGLLGGFADFIAVRTRFFDDFLLAAVA--AGIRQVVILGAG 91 (260)
T ss_pred HhCCCCcCcCChHHHHHhchhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHh--cCCcEEEEeCCc
Confidence 478999999999999999987651 01 1 1335689999999999999997 578899999999
Q ss_pred CCCcccccCCCCCcEEEEeChHHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCCCCeEEEEccC-CC
Q 024907 65 MDTRPYRLNWPTSTIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPSVWAIQGL-PV 143 (260)
Q Consensus 65 lDTR~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~~Ptl~i~EGv-~Y 143 (260)
||||+|||+++.+++|||||+|+|+++|+++|++.+..++.+++++++|+. ++|.+.|..+|||+++||+||+||| +|
T Consensus 92 lDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~-~~w~~~L~~~gfd~~~ptl~i~EGvl~Y 170 (260)
T TIGR00027 92 LDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLR-QDWPAALAAAGFDPTAPTAWLWEGLLMY 170 (260)
T ss_pred cccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCch-hhHHHHHHhCCCCCCCCeeeeecchhhc
Confidence 999999999987899999999999999999999887666778999999999 8999999999999999999999999 89
Q ss_pred CCHHHHHHHHHHHHhccCCCcEEEEeCChhhhh--------h-hcCCC-cchhHH--------HHHHHHhCCceeeeeCH
Q 024907 144 MTLASFEDVLLLVGSLAMNKCLFLGELPAWLAE--------T-EFGNK-STTEKW--------MDKLFMSNGFGVGMVSY 205 (260)
Q Consensus 144 l~~~~~~~ll~~i~~~~a~gs~l~~d~~~~~~~--------~-~~~~~-~~~~~w--------~~~~~~~~Gw~~~~~~~ 205 (260)
|+++++.+||+.|++++++||+|+||+...+.. . ..... ....+| +.++|..+||++..+++
T Consensus 171 L~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gw~~~~~~~ 250 (260)
T TIGR00027 171 LTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLVFGIDRADVAEWLAERGWRASEHTP 250 (260)
T ss_pred CCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhcccccccccCCChhhHHHHHHHCCCeeecCCH
Confidence 999999999999999999999999998543210 0 00000 112222 46899999999866699
Q ss_pred HHHHHHcCCC
Q 024907 206 KEVASSLGKE 215 (260)
Q Consensus 206 ~~~~~~~g~~ 215 (260)
.|+.++||++
T Consensus 251 ~e~~~~y~r~ 260 (260)
T TIGR00027 251 GELARRYGRP 260 (260)
T ss_pred HHHHHHhCCC
Confidence 9999999985
No 2
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4.8e-46 Score=339.94 Aligned_cols=216 Identities=24% Similarity=0.420 Sum_probs=182.2
Q ss_pred CCCCCCCCccCHhhhhcCCCCCc--chh----hh-----hh---HHHHHHHHHHHHHHHHHhhccCCcceEEEeCCCCCC
Q 024907 2 CNAYAEPLFVDPYAGCLVPPDVQ--MDL----KK-----YS---HHYCLTTKFIDDKLLRTVNHMDGLKQVVLLTDGMDT 67 (260)
Q Consensus 2 ~s~r~~~l~~Dp~A~~~~~~~~~--~~~----~~-----~~---~~~~~Rtr~iDd~l~~~~~~~~g~~QVV~LGaGlDT 67 (260)
.|+++++|++||||..|++.... ..+ .. .. .++++||+|||+++.+++. .|.+|||||||||||
T Consensus 28 es~~~~~L~~D~~A~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~Rtr~fD~~~~~~~~--~g~~qvViLgaGLDT 105 (297)
T COG3315 28 ESRKPDPLIDDPFAEELVRQGDDDFTKLADPALALGGGDFLERMNFLAARTRYFDDFVRAALD--AGIRQVVILGAGLDT 105 (297)
T ss_pred HhcCCCcccCCHHHHHHHhhhHHHHHHhcChhhhcccchhhhhhhhHHHHHHHHHHHHHHHHH--hcccEEEEecccccc
Confidence 47889999999999999996542 111 10 11 2699999999999999998 468999999999999
Q ss_pred cccccCCCCCcEEEEeChHHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCCCCeEEEEccC-CCCCH
Q 024907 68 RPYRLNWPTSTIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPSVWAIQGL-PVMTL 146 (260)
Q Consensus 68 R~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~~Ptl~i~EGv-~Yl~~ 146 (260)
|+||++||.+++|||||+|+|+++|+++|++.++.+|.++++|++|+..++|.++|.++|||+++||+||+||| +||++
T Consensus 106 RayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~ 185 (297)
T COG3315 106 RAYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSRPTLWIAEGLLMYLPE 185 (297)
T ss_pred ceeecCCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCCCeEEEeccccccCCH
Confidence 99999999899999999999999999999999999998999999999988999999999999999999999999 89999
Q ss_pred HHHHHHHHHHHhccCCCcEEEEeCC--hhhh-h---hh-----cC-------C--CcchhHHHHHHHHhCCceeeee-CH
Q 024907 147 ASFEDVLLLVGSLAMNKCLFLGELP--AWLA-E---TE-----FG-------N--KSTTEKWMDKLFMSNGFGVGMV-SY 205 (260)
Q Consensus 147 ~~~~~ll~~i~~~~a~gs~l~~d~~--~~~~-~---~~-----~~-------~--~~~~~~w~~~~~~~~Gw~~~~~-~~ 205 (260)
+++.++|+.|++++++||.+++++. .... . .. .. + ........+.++.++||..... ..
T Consensus 186 ~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~~~l~~~g~~~~~~~~~ 265 (297)
T COG3315 186 EAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDPAEIETWLAERGWRSTLNRTT 265 (297)
T ss_pred HHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccceeccCCHHHHHHHHHhcCEEEEecCCc
Confidence 9999999999999999999999984 2221 1 11 00 0 0011223568999999998655 89
Q ss_pred HHHHHHcCCCCCCc
Q 024907 206 KEVASSLGKELAPG 219 (260)
Q Consensus 206 ~~~~~~~g~~~~~~ 219 (260)
.++.++||++.+..
T Consensus 266 ~~~~~~~~~~~~~~ 279 (297)
T COG3315 266 EDLAARYGRPTPRF 279 (297)
T ss_pred HHHHHHhCCCcccc
Confidence 99999999988754
No 3
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=100.00 E-value=2.5e-38 Score=270.28 Aligned_cols=155 Identities=25% Similarity=0.441 Sum_probs=127.9
Q ss_pred CCCCCCCccCHhhhhcCCCCCc------ch---------hhhhhHHHHHHHHHHHHHHHHHhhccCCcceEEEeCCCCCC
Q 024907 3 NAYAEPLFVDPYAGCLVPPDVQ------MD---------LKKYSHHYCLTTKFIDDKLLRTVNHMDGLKQVVLLTDGMDT 67 (260)
Q Consensus 3 s~r~~~l~~Dp~A~~~~~~~~~------~~---------~~~~~~~~~~Rtr~iDd~l~~~~~~~~g~~QVV~LGaGlDT 67 (260)
|.+++++|+||+|..|++.... .. ...+..++++||++||+.+.+++++++|++|||+|||||||
T Consensus 12 s~~~~~~~~Dp~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rt~~iD~~v~~~i~~~~~~~qvV~LGaGlDT 91 (183)
T PF04072_consen 12 SKRPDPYFEDPYAARLLSKLGRAWLKDYDFSKFNAASARDPGINRGYAARTRYIDDAVREFIAKHPGARQVVNLGAGLDT 91 (183)
T ss_dssp HHHHHCSSHTCCCCHHHHCCCCHCC-B--SGHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTESEEEEET-TT--
T ss_pred hCCCCcccCCHhHHHHHcccccccccchhhhcccccccccHHHHhHHHHHHHHHHHHHHHhhccCCCCcEEEEcCCCCCc
Confidence 5667899999999999988722 11 11235679999999999999999766788899999999999
Q ss_pred cccccCCCC-CcEEEEeChHHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCCCCeEEEEccC-CCCC
Q 024907 68 RPYRLNWPT-STIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPSVWAIQGL-PVMT 145 (260)
Q Consensus 68 R~~Rl~~~~-~~~~~EvD~P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~~Ptl~i~EGv-~Yl~ 145 (260)
|+||++++. +++|||||+|+|++.|+++|++.+...+.+++++++|+...+|.+.|.++||+++.||+||+||| +||+
T Consensus 92 r~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ptl~i~Egvl~Yl~ 171 (183)
T PF04072_consen 92 RAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDRPTLFIAEGVLMYLS 171 (183)
T ss_dssp HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTSEEEEEEESSGGGS-
T ss_pred hHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCCCeEEEEcchhhcCC
Confidence 999998764 89999999999999999999987543334678999999988999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHH
Q 024907 146 LASFEDVLLLVG 157 (260)
Q Consensus 146 ~~~~~~ll~~i~ 157 (260)
++++.+||+.|+
T Consensus 172 ~~~~~~ll~~ia 183 (183)
T PF04072_consen 172 PEQVDALLRAIA 183 (183)
T ss_dssp HHHHHHHHHHH-
T ss_pred HHHHHHHHHHhC
Confidence 999999999885
No 4
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.4e-26 Score=205.90 Aligned_cols=205 Identities=16% Similarity=0.173 Sum_probs=155.2
Q ss_pred CCCCccCHhhhhcCCCCCcchhhhhhHHHHHHHHHHHHHHHHHhhccCCcceEEEeCCCCCCccccc---CCCCCcEEEE
Q 024907 6 AEPLFVDPYAGCLVPPDVQMDLKKYSHHYCLTTKFIDDKLLRTVNHMDGLKQVVLLTDGMDTRPYRL---NWPTSTIIFD 82 (260)
Q Consensus 6 ~~~l~~Dp~A~~~~~~~~~~~~~~~~~~~~~Rtr~iDd~l~~~~~~~~g~~QVV~LGaGlDTR~~Rl---~~~~~~~~~E 82 (260)
..+|+.||+...++..........+.+++.+||.-|+..+.+|+.+.++..||||||||+||++||| .++..++|||
T Consensus 39 ~~gy~~d~~~~~~~~~~~~rr~P~inRGy~~R~~aI~~~v~~Fl~~~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fie 118 (335)
T KOG2918|consen 39 KSGYWHDPFIKLFVPSKKARRAPEINRGYWARTMAIRHAVRAFLEQTDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIE 118 (335)
T ss_pred hcCCccCchhhhhccccccCCCceecchhhHHHHHHHHHHHHHHHhcCCceEEEEcCCCccchhhhhhccCCCCcceEEE
Confidence 4589999999999985322222235678999999999999999987678899999999999999999 2456899999
Q ss_pred eChHHHHHHHHHHHhhcCC----------C---------CCCceeEEeccCC-CchHHHHHHhcCCCCCCCeEEEEccC-
Q 024907 83 ISPERIFKISAEKLEGVGA----------K---------IPRSCLFLHVPLE-SSNIQQALRAKGFNGNRPSVWAIQGL- 141 (260)
Q Consensus 83 vD~P~v~~~K~~~l~~~~~----------~---------~p~~~~~v~vd~~-~~dw~~~L~~~Gfd~~~Ptl~i~EGv- 141 (260)
||+|++++.|..++..... . ...+++.+++|++ ...+.+.|..+|.|++.||++|+|||
T Consensus 119 vDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvL 198 (335)
T KOG2918|consen 119 VDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHLIGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVL 198 (335)
T ss_pred ecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceeeeccchhhhHHHHHHHHhccCCcCcceeehhhhhh
Confidence 9999999999855433221 0 0247888899987 35678899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhccCCCcEEEEeCChhh---hhh--------hcCCCc----chhHHHHHHHHhCCce-eeeeCH
Q 024907 142 PVMTLASFEDVLLLVGSLAMNKCLFLGELPAWL---AET--------EFGNKS----TTEKWMDKLFMSNGFG-VGMVSY 205 (260)
Q Consensus 142 ~Yl~~~~~~~ll~~i~~~~a~gs~l~~d~~~~~---~~~--------~~~~~~----~~~~w~~~~~~~~Gw~-~~~~~~ 205 (260)
.||++++...||+++++.|+.+-.+.||+..+- ... ..++.. .+..--.+.|-..||. |.+.+.
T Consensus 199 vYM~pe~S~~Li~w~~~~F~~a~fv~YEQi~~~D~Fg~vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 199 VYMEPEESANLIKWAASKFENAHFVNYEQINPNDRFGKVMLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDM 278 (335)
T ss_pred eeccHHHHHHHHHHHHHhCCcccEEEEeccCCCChHHHHHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhH
Confidence 699999999999999999988878999985421 111 011100 0000012456899998 577777
Q ss_pred HHHHH
Q 024907 206 KEVAS 210 (260)
Q Consensus 206 ~~~~~ 210 (260)
-++..
T Consensus 279 ~ei~n 283 (335)
T KOG2918|consen 279 NEIYN 283 (335)
T ss_pred HHHHH
Confidence 66644
No 5
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.96 E-value=7e-05 Score=67.80 Aligned_cols=126 Identities=10% Similarity=0.095 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhhccCCcceEEEeCCCCCCccc------ccCCCCCcEEEEeCh-HHHHHHHHHHHhhcCCCCCCceeEEe
Q 024907 39 KFIDDKLLRTVNHMDGLKQVVLLTDGMDTRPY------RLNWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLH 111 (260)
Q Consensus 39 r~iDd~l~~~~~~~~g~~QVV~LGaGlDTR~~------Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~p~~~~~v~ 111 (260)
.|+-..++-... ..|++|++-||||+=|... +. .| ..+++=||. |-|++.-+.+|.... ..+..++.
T Consensus 54 ~Fl~RaVr~la~-~~GIrQFLDlGsGlPT~~nvHevAq~~-~P-~aRVVYVD~DPvv~ah~ralL~~~~---~g~t~~v~ 127 (267)
T PF04672_consen 54 AFLRRAVRYLAE-EAGIRQFLDLGSGLPTAGNVHEVAQRV-AP-DARVVYVDNDPVVLAHARALLADNP---RGRTAYVQ 127 (267)
T ss_dssp HHHHHHHHHHHC-TT---EEEEET--S--SS-HHHHHHHH--T-T-EEEEEESSHHHHHCCHHHHTT-T---TSEEEEEE
T ss_pred HHHHHHHHHHHH-hcCcceEEEcccCCCCCCCHhHHHHhh-CC-CceEEEECCCchHHHHHHhhhcCCC---CccEEEEe
Confidence 344444444443 2399999999999998532 11 24 445555555 667777778887752 12478999
Q ss_pred ccCCC-chHHH-HHHhcCCCCCCCeEEEEccCC-CCCH-HHHHHHHHHHHhccCCCcEEEEeC
Q 024907 112 VPLES-SNIQQ-ALRAKGFNGNRPSVWAIQGLP-VMTL-ASFEDVLLLVGSLAMNKCLFLGEL 170 (260)
Q Consensus 112 vd~~~-~dw~~-~L~~~Gfd~~~Ptl~i~EGv~-Yl~~-~~~~~ll~~i~~~~a~gs~l~~d~ 170 (260)
.|+.. +...+ .-...-+|.++|+.+++=||+ +++. ++...+++.+.+..+|||.+++.+
T Consensus 128 aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish 190 (267)
T PF04672_consen 128 ADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISH 190 (267)
T ss_dssp --TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEE
T ss_pred CCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEe
Confidence 99873 33332 112345899999999999994 7754 678999999999999999999875
No 6
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=96.48 E-value=0.03 Score=51.43 Aligned_cols=108 Identities=13% Similarity=-0.086 Sum_probs=69.0
Q ss_pred cceEEEeCCCCCCccccc--CCCCCcEEEEeChH-HHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCC
Q 024907 55 LKQVVLLTDGMDTRPYRL--NWPTSTIIFDISPE-RIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGN 131 (260)
Q Consensus 55 ~~QVV~LGaGlDTR~~Rl--~~~~~~~~~EvD~P-~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~ 131 (260)
...||-||||-=...-.| ..+.+.+|+=||.. ++++.-++.+.... +.-++..+..|+.. ....+.. ++ +
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~--p~~~v~~i~gD~~~--~~~~~~~--~~-~ 136 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY--PQLEVHGICADFTQ--PLALPPE--PA-A 136 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC--CCceEEEEEEcccc--hhhhhcc--cc-c
Confidence 357999999987755444 22225778888885 44444444444322 11245667788762 1111111 11 3
Q ss_pred CCeEEEEccC-CC-CCHHHHHHHHHHHHhccCCCcEEEEe
Q 024907 132 RPSVWAIQGL-PV-MTLASFEDVLLLVGSLAMNKCLFLGE 169 (260)
Q Consensus 132 ~Ptl~i~EGv-~Y-l~~~~~~~ll~~i~~~~a~gs~l~~d 169 (260)
.+.++++-|. ++ +++++..++|+.+.+...||+.++++
T Consensus 137 ~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 137 GRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred CCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 4777888876 54 78889999999999998999987755
No 7
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=96.00 E-value=0.16 Score=46.87 Aligned_cols=159 Identities=14% Similarity=0.140 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHHHhhc---cCCcceEEEeCCCCCCccccc----CCCC-CcEEEEeCh-HHHHHHHHHHHhhcCCC
Q 024907 32 HHYCLTTKFIDDKLLRTVNH---MDGLKQVVLLTDGMDTRPYRL----NWPT-STIIFDISP-ERIFKISAEKLEGVGAK 102 (260)
Q Consensus 32 ~~~~~Rtr~iDd~l~~~~~~---~~g~~QVV~LGaGlDTR~~Rl----~~~~-~~~~~EvD~-P~v~~~K~~~l~~~~~~ 102 (260)
.++-.|...+...|.+++.. .....-||.++||-= |+ =| ..|. ...+.=.|+ |..++.=++++++.+-.
T Consensus 110 rGIR~Rk~~l~~~i~~ai~~L~~~g~pvrIlDIAaG~G-RY-vlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~ 187 (311)
T PF12147_consen 110 RGIRQRKVHLEELIRQAIARLREQGRPVRILDIAAGHG-RY-VLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLE 187 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeccCCc-HH-HHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCc
Confidence 45666667777888777653 123457999999942 22 11 2222 233444444 34456667777776543
Q ss_pred CCCceeEEeccCCCchHHHHHHhcCCCCCCCeEEEEccCC-CCCHH-HHHHHHHHHHhccCCCcEEEEeCChhhhhhh--
Q 024907 103 IPRSCLFLHVPLESSNIQQALRAKGFNGNRPSVWAIQGLP-VMTLA-SFEDVLLLVGSLAMNKCLFLGELPAWLAETE-- 178 (260)
Q Consensus 103 ~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~~Ptl~i~EGv~-Yl~~~-~~~~ll~~i~~~~a~gs~l~~d~~~~~~~~~-- 178 (260)
.-.++...|.... +.|.. . .-+||+.|+-||. ||+.. .+...|+.+++...||+.++|.--+|...+.
T Consensus 188 --~i~~f~~~dAfd~---~~l~~--l-~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~I 259 (311)
T PF12147_consen 188 --DIARFEQGDAFDR---DSLAA--L-DPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMI 259 (311)
T ss_pred --cceEEEecCCCCH---hHhhc--c-CCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHH
Confidence 2458899986532 23322 1 2479999999994 78765 4788999999988999999998433321110
Q ss_pred -cCCCc--chhHH---------HHHHHHhCCcee
Q 024907 179 -FGNKS--TTEKW---------MDKLFMSNGFGV 200 (260)
Q Consensus 179 -~~~~~--~~~~w---------~~~~~~~~Gw~~ 200 (260)
..+.+ .+.+| +.++++.+||..
T Consensus 260 Ar~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K 293 (311)
T PF12147_consen 260 ARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEK 293 (311)
T ss_pred HHHHhcccCCCceEEEecCHHHHHHHHHHcCCch
Confidence 00111 23456 357888888874
No 8
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=95.78 E-value=0.074 Score=46.74 Aligned_cols=97 Identities=12% Similarity=0.054 Sum_probs=69.7
Q ss_pred CCcceEEEeCCCCCCccccc--CCCCCcEEEEeChHHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCC
Q 024907 53 DGLKQVVLLTDGMDTRPYRL--NWPTSTIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNG 130 (260)
Q Consensus 53 ~g~~QVV~LGaGlDTR~~Rl--~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~ 130 (260)
++.++||-+|+|.=.-...+ .+| ++++.-+|+|+|++.-++ .+++.+++.|+. +.+..
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dlp~v~~~~~~---------~~rv~~~~gd~f-~~~P~--------- 158 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYP-NLRATVFDLPEVIEQAKE---------ADRVEFVPGDFF-DPLPV--------- 158 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHST-TSEEEEEE-HHHHCCHHH---------TTTEEEEES-TT-TCCSS---------
T ss_pred cCccEEEeccCcchHHHHHHHHHCC-CCcceeeccHhhhhcccc---------ccccccccccHH-hhhcc---------
Confidence 46789999999988877776 567 688999999999876444 138999999987 33321
Q ss_pred CCCeEEEEccCCCCCHHHHHHHHHHHHhccCCC--cE-EEEeC
Q 024907 131 NRPSVWAIQGLPVMTLASFEDVLLLVGSLAMNK--CL-FLGEL 170 (260)
Q Consensus 131 ~~Ptl~i~EGv~Yl~~~~~~~ll~~i~~~~a~g--s~-l~~d~ 170 (260)
.-++++.-.+..++.+++..||+.+.+...|| ++ ++.|+
T Consensus 159 -~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 159 -ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp -ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred -ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 22555555545789999999999999988887 75 55775
No 9
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=94.78 E-value=0.45 Score=43.42 Aligned_cols=104 Identities=9% Similarity=0.004 Sum_probs=71.7
Q ss_pred CcceEEEeCCCCCCccccc--CCCCCcEEEEeChHHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCC
Q 024907 54 GLKQVVLLTDGMDTRPYRL--NWPTSTIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGN 131 (260)
Q Consensus 54 g~~QVV~LGaGlDTR~~Rl--~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~ 131 (260)
+...|+-+|||.=+-+..+ ..| +.++.-+|.|++++.-++.+++.+. ..+++++..|+...++ ++
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p-~~~~~~~D~~~~~~~a~~~~~~~gl--~~rv~~~~~d~~~~~~----------~~ 215 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNLPGAIDLVNENAAEKGV--ADRMRGIAVDIYKESY----------PE 215 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCC-CCEEEEEecHHHHHHHHHHHHhCCc--cceEEEEecCccCCCC----------CC
Confidence 4568999999998866665 355 5677788889998876666665543 2368889998763332 11
Q ss_pred CCeEEEEccCCCCCHHHHHHHHHHHHhccCCCcEE-EEeC
Q 024907 132 RPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLF-LGEL 170 (260)
Q Consensus 132 ~Ptl~i~EGv~Yl~~~~~~~ll~~i~~~~a~gs~l-~~d~ 170 (260)
.-.+++.-.+...+++....+|+.+.+...||+++ +.|+
T Consensus 216 ~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 216 ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 22444444334567777889999999888888875 5665
No 10
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=94.73 E-value=0.98 Score=40.02 Aligned_cols=162 Identities=9% Similarity=0.048 Sum_probs=94.4
Q ss_pred cceEEEeCCCCCCccccc----CCCCCcEEEEeCh-HHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCC
Q 024907 55 LKQVVLLTDGMDTRPYRL----NWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFN 129 (260)
Q Consensus 55 ~~QVV~LGaGlDTR~~Rl----~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd 129 (260)
...|+-+|||.=.-...+ ..| +.+++-||. |++++.-++.+...+. +.+++++..|+.. + . +
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~-~~~v~gvD~S~~ml~~A~~~~~~~~~--~~~v~~~~~d~~~--~----~---~- 123 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHD-NCKIIAIDNSPAMIERCRRHIDAYKA--PTPVDVIEGDIRD--I----A---I- 123 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCC-CCeEEEEeCCHHHHHHHHHHHHhcCC--CCCeEEEeCChhh--C----C---C-
Confidence 357999999965533222 234 678999998 7787766666665432 2367788777642 1 1 1
Q ss_pred CCCCeEEEEccC-CCCCHHHHHHHHHHHHhccCCCcEEE-EeCChhhhhhhcCCCc-chhHHHHHHHHhCCcee-eeeCH
Q 024907 130 GNRPSVWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFL-GELPAWLAETEFGNKS-TTEKWMDKLFMSNGFGV-GMVSY 205 (260)
Q Consensus 130 ~~~Ptl~i~EGv-~Yl~~~~~~~ll~~i~~~~a~gs~l~-~d~~~~~~~~~~~~~~-~~~~w~~~~~~~~Gw~~-~~~~~ 205 (260)
....++++-.+ .++++++...+++.|.+...||+.++ .|....... .... ....| ..+....||+. ++...
T Consensus 124 -~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~---~~~~~~~~~~-~~~~~~~g~s~~ei~~~ 198 (247)
T PRK15451 124 -ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDA---KVGELLFNMH-HDFKRANGYSELEISQK 198 (247)
T ss_pred -CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcc---hhHHHHHHHH-HHHHHHcCCCHHHHHHH
Confidence 11234444444 47888778889999999888888755 553210000 0000 01122 24557789986 43332
Q ss_pred HHHHHHcCCCCCCccchhHHHHHHHhcCChHH
Q 024907 206 KEVASSLGKELAPGYYKNILFLAEQLRFSDDQ 237 (260)
Q Consensus 206 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 237 (260)
.+ ++.....+.+.....-+.++.||+..+
T Consensus 199 ~~---~~~~~~~~~~~~~~~~~L~~aGF~~v~ 227 (247)
T PRK15451 199 RS---MLENVMLTDSVETHKARLHKAGFEHSE 227 (247)
T ss_pred HH---HHHhhcccCCHHHHHHHHHHcCchhHH
Confidence 22 222233344677777788888998654
No 11
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=94.57 E-value=0.76 Score=40.75 Aligned_cols=195 Identities=16% Similarity=0.110 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHHHHhhccCCcceEEEeCCCCCCccccc--CCCCCcEEEEeCh-HHHHHHHHHHHhhcCCCCCCceeE
Q 024907 33 HYCLTTKFIDDKLLRTVNHMDGLKQVVLLTDGMDTRPYRL--NWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLF 109 (260)
Q Consensus 33 ~~~~Rtr~iDd~l~~~~~~~~g~~QVV~LGaGlDTR~~Rl--~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~p~~~~~ 109 (260)
....|++.+.+.+..... ....+|+-+|||.-.-...+ ..| +.+++-+|. |.+++.-+ + .++++
T Consensus 10 ~~~~~~~~~~~ll~~l~~--~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~----~------~~~~~ 76 (255)
T PRK14103 10 FADHRGRPFYDLLARVGA--ERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAAR----E------RGVDA 76 (255)
T ss_pred HHhHhhCHHHHHHHhCCC--CCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHH----h------cCCcE
Confidence 345677777777765432 23468999999998765555 234 467888888 55554311 1 14556
Q ss_pred EeccCCCchHHHHHHhcCCCCCCCeEEEEccCCCCCHHHHHHHHHHHHhccCCCcEEEEeCChh----hh----hhh---
Q 024907 110 LHVPLESSNIQQALRAKGFNGNRPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGELPAW----LA----ETE--- 178 (260)
Q Consensus 110 v~vd~~~~dw~~~L~~~Gfd~~~Ptl~i~EGv~Yl~~~~~~~ll~~i~~~~a~gs~l~~d~~~~----~~----~~~--- 178 (260)
+..|+. +|. ....|| .++...++.+++. ...+++.+.+...||+.+++..+.. .. ...
T Consensus 77 ~~~d~~--~~~---~~~~fD----~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~ 145 (255)
T PRK14103 77 RTGDVR--DWK---PKPDTD----VVVSNAALQWVPE--HADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARRE 145 (255)
T ss_pred EEcChh--hCC---CCCCce----EEEEehhhhhCCC--HHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccC
Confidence 666653 231 112233 4444444456653 3567888888888999887754211 00 000
Q ss_pred ------cC--C----CcchhHHHHHHHHhCCceeeeeCHHHHHHHcCCCCCCc-cchhHH----HHHHHhcCChHHHHHH
Q 024907 179 ------FG--N----KSTTEKWMDKLFMSNGFGVGMVSYKEVASSLGKELAPG-YYKNIL----FLAEQLRFSDDQMDTW 241 (260)
Q Consensus 179 ------~~--~----~~~~~~w~~~~~~~~Gw~~~~~~~~~~~~~~g~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~ 241 (260)
.. . .........++|.++||++.+.... +-.++... .+..++ +....-++++.+++.|
T Consensus 146 ~w~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 220 (255)
T PRK14103 146 PWAKLLRDIPFRVGAVVQTPAGYAELLTDAGCKVDAWETT-----YVHQLTGEDPVLDWITGTALRPVRERLSDDSWEQF 220 (255)
T ss_pred chhHHhcccccccCcCCCCHHHHHHHHHhCCCeEEEEeee-----eeeeCCCchhhhhhhhccchhhhhhhCCHHHHHHH
Confidence 00 0 0012223457899999986432211 11111111 111111 1112238889999999
Q ss_pred HHHHHHhhhh---cCccC
Q 024907 242 RRELQRVEEE---GDEEG 256 (260)
Q Consensus 242 ~~~~~~~~~~---~~~~~ 256 (260)
++++.+.=.+ .++||
T Consensus 221 ~~~~~~~l~~~~~~~~~g 238 (255)
T PRK14103 221 RAELIPLLREAYPPRADG 238 (255)
T ss_pred HHHHHHHHHHHCCCCCCC
Confidence 9998764433 34555
No 12
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=94.41 E-value=0.19 Score=38.18 Aligned_cols=103 Identities=14% Similarity=0.098 Sum_probs=70.3
Q ss_pred ceEEEeCCCCCCcccccCC--CCCcEEEEeCh-HHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCCC
Q 024907 56 KQVVLLTDGMDTRPYRLNW--PTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNR 132 (260)
Q Consensus 56 ~QVV~LGaGlDTR~~Rl~~--~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~~ 132 (260)
..|+-||||.=.-...+.. + +.+++=||. |++++.-++...+.+. ..+.+++..|+ ...+. ....
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~i~~~~~d~-~~~~~--------~~~~ 70 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFP-GARVVGVDISPEMLEIARERAAEEGL--SDRITFVQGDA-EFDPD--------FLEP 70 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHHHHHTTT--TTTEEEEESCC-HGGTT--------TSSC
T ss_pred CEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCC--CCCeEEEECcc-ccCcc--------cCCC
Confidence 4699999998776666633 4 566777777 6677665666543332 24789999888 11111 1233
Q ss_pred CeEEEEcc-C-C-CCCHHHHHHHHHHHHhccCCCcEEEEeC
Q 024907 133 PSVWAIQG-L-P-VMTLASFEDVLLLVGSLAMNKCLFLGEL 170 (260)
Q Consensus 133 Ptl~i~EG-v-~-Yl~~~~~~~ll~~i~~~~a~gs~l~~d~ 170 (260)
.-++++-+ . . |+..++..++++.+.++..||+.++++.
T Consensus 71 ~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 71 FDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 56777777 3 3 5656788999999999988999988764
No 13
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=94.21 E-value=0.72 Score=43.00 Aligned_cols=111 Identities=13% Similarity=-0.022 Sum_probs=67.6
Q ss_pred cceEEEeCCCCCCc------ccccCCCCCcEEEEeChH-HHHHHHHHHHhhcCCCCCCceeE--EeccCCCchHHHHHHh
Q 024907 55 LKQVVLLTDGMDTR------PYRLNWPTSTIIFDISPE-RIFKISAEKLEGVGAKIPRSCLF--LHVPLESSNIQQALRA 125 (260)
Q Consensus 55 ~~QVV~LGaGlDTR------~~Rl~~~~~~~~~EvD~P-~v~~~K~~~l~~~~~~~p~~~~~--v~vd~~~~dw~~~L~~ 125 (260)
...+|-||||--+. ++. .....++|+=||.- +.++.-.+.|... ..| +... +..|++ +-...|..
T Consensus 77 ~~~lIELGsG~~~Kt~~LL~aL~-~~~~~~~Y~plDIS~~~L~~a~~~L~~~--~~p-~l~v~~l~gdy~--~~l~~l~~ 150 (319)
T TIGR03439 77 GSMLVELGSGNLRKVGILLEALE-RQKKSVDYYALDVSRSELQRTLAELPLG--NFS-HVRCAGLLGTYD--DGLAWLKR 150 (319)
T ss_pred CCEEEEECCCchHHHHHHHHHHH-hcCCCceEEEEECCHHHHHHHHHhhhhc--cCC-CeEEEEEEecHH--HHHhhccc
Confidence 45899999996554 222 12235889999986 3444444444411 112 2333 455654 22233322
Q ss_pred cCCCCCCCeEEEEccC-C-CCCHHHHHHHHHHHHh-ccCCCcEEE--EeCCh
Q 024907 126 KGFNGNRPSVWAIQGL-P-VMTLASFEDVLLLVGS-LAMNKCLFL--GELPA 172 (260)
Q Consensus 126 ~Gfd~~~Ptl~i~EGv-~-Yl~~~~~~~ll~~i~~-~~a~gs~l~--~d~~~ 172 (260)
. -.++.|.++++-|- . -+++++...+|+.+++ ...||..++ +|...
T Consensus 151 ~-~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k 201 (319)
T TIGR03439 151 P-ENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCK 201 (319)
T ss_pred c-cccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCC
Confidence 1 12356789999997 4 5899999999999998 766777544 67653
No 14
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=93.59 E-value=1.8 Score=37.92 Aligned_cols=159 Identities=9% Similarity=0.063 Sum_probs=92.9
Q ss_pred ceEEEeCCCCCCccccc----CCCCCcEEEEeCh-HHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCC
Q 024907 56 KQVVLLTDGMDTRPYRL----NWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNG 130 (260)
Q Consensus 56 ~QVV~LGaGlDTR~~Rl----~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~ 130 (260)
..|+-+|||-=.-...+ ..| +.+++-||. |++++.-++.++..+. ..+++++..|+..-. +.
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p-~~~v~gvD~s~~ml~~a~~~~~~~~~--~~~v~~~~~d~~~~~---------~~- 121 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQP-NVKIIGIDNSQPMVERCRQHIAAYHS--EIPVEILCNDIRHVE---------IK- 121 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCC-CCeEEEEeCCHHHHHHHHHHHHhcCC--CCCeEEEECChhhCC---------CC-
Confidence 47999999876644333 334 678888888 7777765666655432 125777777765211 11
Q ss_pred CCCeEEEEccC-CCCCHHHHHHHHHHHHhccCCCcEEEE-eCChhhhhhhcCCCcchhHHH----HHHHHhCCcee-eee
Q 024907 131 NRPSVWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFLG-ELPAWLAETEFGNKSTTEKWM----DKLFMSNGFGV-GMV 203 (260)
Q Consensus 131 ~~Ptl~i~EGv-~Yl~~~~~~~ll~~i~~~~a~gs~l~~-d~~~~~~~~~~~~~~~~~~w~----~~~~~~~Gw~~-~~~ 203 (260)
...++++-.+ .|+++++...+++.+.+...||+.+++ |....... ...+++ ..+....||+. ++.
T Consensus 122 -~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~-------~~~~~~~~~~~~~~~~~g~~~~~~~ 193 (239)
T TIGR00740 122 -NASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDT-------KINHLLIDLHHQFKRANGYSELEIS 193 (239)
T ss_pred -CCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCH-------hHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 2345666666 588887788899999998888887664 43210000 001111 12335577764 332
Q ss_pred CHHHHHHHcCCCCCCccchhHHHHHHHhcCChHHH
Q 024907 204 SYKEVASSLGKELAPGYYKNILFLAEQLRFSDDQM 238 (260)
Q Consensus 204 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (260)
...+ .+.....+.+.+...-...+.||+..+.
T Consensus 194 ~~~~---~~~~~~~~~s~~~~~~~l~~aGF~~~~~ 225 (239)
T TIGR00740 194 QKRT---ALENVMRTDSIETHKARLKNVGFSHVEL 225 (239)
T ss_pred HHHH---HHhccCCCCCHHHHHHHHHHcCCchHHH
Confidence 2222 2222223346777777788889987654
No 15
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=93.28 E-value=2.9 Score=37.51 Aligned_cols=100 Identities=10% Similarity=0.050 Sum_probs=60.9
Q ss_pred cceEEEeCCCCCCcccccCCCCCcEEEEeCh-HHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCCCC
Q 024907 55 LKQVVLLTDGMDTRPYRLNWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRP 133 (260)
Q Consensus 55 ~~QVV~LGaGlDTR~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~~P 133 (260)
...|+-+|||.-.-+..+....+.+++-+|. |++++.-++.... ..++.++..|+... .+..+.=
T Consensus 53 ~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~-----~~~i~~~~~D~~~~---------~~~~~~F 118 (263)
T PTZ00098 53 NSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD-----KNKIEFEANDILKK---------DFPENTF 118 (263)
T ss_pred CCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc-----CCceEEEECCcccC---------CCCCCCe
Confidence 3579999999876555552212456777777 4444433333222 12577777776521 1222222
Q ss_pred eEEEE-ccCCCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024907 134 SVWAI-QGLPVMTLASFEDVLLLVGSLAMNKCLFLG 168 (260)
Q Consensus 134 tl~i~-EGv~Yl~~~~~~~ll~~i~~~~a~gs~l~~ 168 (260)
-++++ ..+.+++.++...+|+.+.++..||+.+++
T Consensus 119 D~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi 154 (263)
T PTZ00098 119 DMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLI 154 (263)
T ss_pred EEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 34555 444677777788999999998889887764
No 16
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=92.39 E-value=0.47 Score=35.68 Aligned_cols=93 Identities=11% Similarity=0.184 Sum_probs=57.5
Q ss_pred EEEeCCCCCCccccc--CCCC--CcEEEEeCh-HHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCCC
Q 024907 58 VVLLTDGMDTRPYRL--NWPT--STIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNR 132 (260)
Q Consensus 58 VV~LGaGlDTR~~Rl--~~~~--~~~~~EvD~-P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~~ 132 (260)
|+-||||.=+-...+ ..+. ..+++=||. |++++.=++.....+ + +.+++..|+. +|... ...
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~---~-~~~~~~~D~~--~l~~~-------~~~ 67 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG---P-KVRFVQADAR--DLPFS-------DGK 67 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT---T-TSEEEESCTT--CHHHH-------SSS
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC---C-ceEEEECCHh--HCccc-------CCC
Confidence 567888875543333 2222 377888886 455565444444432 2 6888999885 35321 124
Q ss_pred CeEEEE-ccC-CCCCHHHHHHHHHHHHhccCCC
Q 024907 133 PSVWAI-QGL-PVMTLASFEDVLLLVGSLAMNK 163 (260)
Q Consensus 133 Ptl~i~-EGv-~Yl~~~~~~~ll~~i~~~~a~g 163 (260)
..++++ -++ .|+++++...+++.+.++..||
T Consensus 68 ~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pg 100 (101)
T PF13649_consen 68 FDLVVCSGLSLHHLSPEELEALLRRIARLLRPG 100 (101)
T ss_dssp EEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred eeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCC
Confidence 456666 554 5899999999999999988766
No 17
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=92.12 E-value=0.34 Score=43.09 Aligned_cols=119 Identities=20% Similarity=0.217 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCcceEEEeCCCCC--CcccccCCCCCcEEEEeCh-HHHHHHHHHHHhhcCCCCCCcee
Q 024907 32 HHYCLTTKFIDDKLLRTVNHMDGLKQVVLLTDGMD--TRPYRLNWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCL 108 (260)
Q Consensus 32 ~~~~~Rtr~iDd~l~~~~~~~~g~~QVV~LGaGlD--TR~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~p~~~~ 108 (260)
.+-.-|||=.-+.+.+--- ...++||-||||-= |.-.--.|| +..+.-||. |++++.-++.+ | +++
T Consensus 10 ~F~~eRtRPa~dLla~Vp~--~~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~rl-------p-~~~ 78 (257)
T COG4106 10 QFEDERTRPARDLLARVPL--ERPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQRL-------P-DAT 78 (257)
T ss_pred HHHHhccCcHHHHHhhCCc--cccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHhC-------C-CCc
Confidence 3445688877777766432 34679999999864 432222477 578999998 67777544432 2 678
Q ss_pred EEeccCCCchHHHHHHhcCCCCCCCe-EEEEccCC-CCCHHHHHHHHHHHHhccCCCcEEEEeCChhh
Q 024907 109 FLHVPLESSNIQQALRAKGFNGNRPS-VWAIQGLP-VMTLASFEDVLLLVGSLAMNKCLFLGELPAWL 174 (260)
Q Consensus 109 ~v~vd~~~~dw~~~L~~~Gfd~~~Pt-l~i~EGv~-Yl~~~~~~~ll~~i~~~~a~gs~l~~d~~~~~ 174 (260)
+...|+. +| .|.+|+ ++.+-.++ .|+.. .+ ||..+-...+||+.++.-+|+++
T Consensus 79 f~~aDl~--~w---------~p~~~~dllfaNAvlqWlpdH-~~-ll~rL~~~L~Pgg~LAVQmPdN~ 133 (257)
T COG4106 79 FEEADLR--TW---------KPEQPTDLLFANAVLQWLPDH-PE-LLPRLVSQLAPGGVLAVQMPDNL 133 (257)
T ss_pred eecccHh--hc---------CCCCccchhhhhhhhhhcccc-HH-HHHHHHHhhCCCceEEEECCCcc
Confidence 8888775 45 455665 55666664 66543 33 44444444469999999988654
No 18
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=91.75 E-value=4.1 Score=35.03 Aligned_cols=133 Identities=17% Similarity=0.104 Sum_probs=73.0
Q ss_pred cceEEEeCCCCCCcccccCCCCCcEEEEeCh-HHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCCCC
Q 024907 55 LKQVVLLTDGMDTRPYRLNWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRP 133 (260)
Q Consensus 55 ~~QVV~LGaGlDTR~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~~P 133 (260)
...|+-+|||.=.-...+... +..++-+|. |+++..-++.+...+. +.+..++..|+.... ..| -
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~~~~--~~~i~~~~~d~~~~~-------~~f----D 121 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDV--AGNVEFEVNDLLSLC-------GEF----D 121 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCC--CCceEEEECChhhCC-------CCc----C
Confidence 468999999987755555322 345666665 4555554444444321 135677777765211 112 2
Q ss_pred eEEEEccCCCCCHHHHHHHHHHHHhccCCCcEEEEeCChh-hh------hhhcC------CCcchhHHHHHHHHhCCcee
Q 024907 134 SVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGELPAW-LA------ETEFG------NKSTTEKWMDKLFMSNGFGV 200 (260)
Q Consensus 134 tl~i~EGv~Yl~~~~~~~ll~~i~~~~a~gs~l~~d~~~~-~~------~~~~~------~~~~~~~w~~~~~~~~Gw~~ 200 (260)
.++....+.|++++....+++.+.+...++..+.+..... .. ..... ....+..++.+++..+||.+
T Consensus 122 ~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v 201 (219)
T TIGR02021 122 IVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKI 201 (219)
T ss_pred EEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCcee
Confidence 4555555567887778888988887765554444432111 10 00000 01113344567888999986
Q ss_pred e
Q 024907 201 G 201 (260)
Q Consensus 201 ~ 201 (260)
.
T Consensus 202 ~ 202 (219)
T TIGR02021 202 V 202 (219)
T ss_pred e
Confidence 3
No 19
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=91.04 E-value=10 Score=33.32 Aligned_cols=190 Identities=14% Similarity=0.124 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHHHhhccCCcceEEEeCCCCCCccccc--CCCCCcEEEEeCh-HHHHHHHHHHHhhcCCCCCCceeE
Q 024907 33 HYCLTTKFIDDKLLRTVNHMDGLKQVVLLTDGMDTRPYRL--NWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLF 109 (260)
Q Consensus 33 ~~~~Rtr~iDd~l~~~~~~~~g~~QVV~LGaGlDTR~~Rl--~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~p~~~~~ 109 (260)
+...+++...+++....- .+..+|+-+|||--.-...+ ..| +.+++-||. |++++.-++.+ .++.+
T Consensus 12 ~~~~~~~~~~~ll~~~~~--~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~--------~~~~~ 80 (258)
T PRK01683 12 FEDERTRPARDLLARVPL--ENPRYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRL--------PDCQF 80 (258)
T ss_pred HHHHhhcHHHHHHhhCCC--cCCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhC--------CCCeE
Confidence 344566667777755422 23468999999988655555 233 467888888 44444322221 25667
Q ss_pred EeccCCCchHHHHHHhcCCCCCCCeEEEEccCCCCCHHHHHHHHHHHHhccCCCcEEEEeCChh----h---h-hhh---
Q 024907 110 LHVPLESSNIQQALRAKGFNGNRPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGELPAW----L---A-ETE--- 178 (260)
Q Consensus 110 v~vd~~~~dw~~~L~~~Gfd~~~Ptl~i~EGv~Yl~~~~~~~ll~~i~~~~a~gs~l~~d~~~~----~---~-~~~--- 178 (260)
+..|+. +|. ....|| .++...++.+++. ...+++.+.+...||+.+++..+.. . . +..
T Consensus 81 ~~~d~~--~~~---~~~~fD----~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (258)
T PRK01683 81 VEADIA--SWQ---PPQALD----LIFANASLQWLPD--HLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENG 149 (258)
T ss_pred EECchh--ccC---CCCCcc----EEEEccChhhCCC--HHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccC
Confidence 777764 231 111222 4444444456653 3567888888888899888764321 0 0 000
Q ss_pred --------cC-C--CcchhHHHHHHHHhCCceeeeeCHHHHHHHcCCCCCCc-----cchhHHHHHHHhcCChHHHHHHH
Q 024907 179 --------FG-N--KSTTEKWMDKLFMSNGFGVGMVSYKEVASSLGKELAPG-----YYKNILFLAEQLRFSDDQMDTWR 242 (260)
Q Consensus 179 --------~~-~--~~~~~~w~~~~~~~~Gw~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 242 (260)
.+ . .........+.+...|+.+++... .+..++.++ .........-..+++..+.+.|+
T Consensus 150 ~w~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~f~ 224 (258)
T PRK01683 150 PWEQNLPDRGARRAPLPPPHAYYDALAPAACRVDIWHT-----TYYHPMPSAQAIVEWVKGTGLRPFLDPLTESEQAAFL 224 (258)
T ss_pred chHHHhccccccCcCCCCHHHHHHHHHhCCCceeeeee-----eeeeecCCchhhhhhhhhccHHHHHhhCCHHHHHHHH
Confidence 00 0 001112345677888887754322 122232221 11111111222579999999999
Q ss_pred HHHHHhh
Q 024907 243 RELQRVE 249 (260)
Q Consensus 243 ~~~~~~~ 249 (260)
+.+...=
T Consensus 225 ~~~~~~~ 231 (258)
T PRK01683 225 AAYLARI 231 (258)
T ss_pred HHHHHHH
Confidence 8886543
No 20
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=90.44 E-value=1.2 Score=38.95 Aligned_cols=111 Identities=10% Similarity=0.065 Sum_probs=67.0
Q ss_pred HHHHHhhccCCcceEEEeCCCCCCcccccCCCCCcEEEEeCh-HHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHH
Q 024907 44 KLLRTVNHMDGLKQVVLLTDGMDTRPYRLNWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQA 122 (260)
Q Consensus 44 ~l~~~~~~~~g~~QVV~LGaGlDTR~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~ 122 (260)
.+...+.+ +..+.++-+|||-=..--+|..- --.+.=+|. |..++.-++.+... .+++++..|+-. .|.
T Consensus 34 ~l~aaLp~-~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~-----~~V~~~~~dvp~-~~P-- 103 (201)
T PF05401_consen 34 TLLAALPR-RRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGL-----PHVEWIQADVPE-FWP-- 103 (201)
T ss_dssp HHHHHHTT-SSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT------SSEEEEES-TTT------
T ss_pred HHHHhcCc-cccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCC-----CCeEEEECcCCC-CCC--
Confidence 33333432 45789999999987766666311 223445555 44555555666653 278899998852 332
Q ss_pred HHhcCCCCCCCeEEEEccCCCCCH-HHHHHHHHHHHhccCCCcEEEEeC
Q 024907 123 LRAKGFNGNRPSVWAIQGLPVMTL-ASFEDVLLLVGSLAMNKCLFLGEL 170 (260)
Q Consensus 123 L~~~Gfd~~~Ptl~i~EGv~Yl~~-~~~~~ll~~i~~~~a~gs~l~~d~ 170 (260)
...|| .++++|-+.||++ ++...+++.+.+..+||+.+++-.
T Consensus 104 --~~~FD----LIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 104 --EGRFD----LIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp --SS-EE----EEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred --CCCee----EEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 23455 6777775578874 788999999999888988887753
No 21
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=90.03 E-value=3.4 Score=35.22 Aligned_cols=100 Identities=5% Similarity=-0.067 Sum_probs=61.7
Q ss_pred ceEEEeCCCCCCcccccCCCCCcEEEEeCh-HHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCCCCe
Q 024907 56 KQVVLLTDGMDTRPYRLNWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPS 134 (260)
Q Consensus 56 ~QVV~LGaGlDTR~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~~Pt 134 (260)
..|+-+|||.=.-+.-+... +..++=+|. |.+++.-++.....+ . +.+....|++. +. + + +.--
T Consensus 32 ~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~~~l~~a~~~~~~~~--~--~v~~~~~d~~~--~~--~-----~-~~fD 96 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNPASIASVLDMKAREN--L--PLRTDAYDINA--AA--L-----N-EDYD 96 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHhC--C--CceeEeccchh--cc--c-----c-CCCC
Confidence 57999999988766555322 345666666 555554444444332 1 24455555532 11 1 1 2234
Q ss_pred EEEEccC-CCCCHHHHHHHHHHHHhccCCCcE-EEEeC
Q 024907 135 VWAIQGL-PVMTLASFEDVLLLVGSLAMNKCL-FLGEL 170 (260)
Q Consensus 135 l~i~EGv-~Yl~~~~~~~ll~~i~~~~a~gs~-l~~d~ 170 (260)
++++-.+ .+++.+....+++.+.++..||+. ++.+.
T Consensus 97 ~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~ 134 (195)
T TIGR00477 97 FIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAA 134 (195)
T ss_pred EEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 6677666 468888888999999998889887 45543
No 22
>PLN03075 nicotianamine synthase; Provisional
Probab=89.45 E-value=2.8 Score=38.75 Aligned_cols=106 Identities=13% Similarity=0.199 Sum_probs=69.3
Q ss_pred CcceEEEeCCC-CCCccccc---CCCCCcEEEEeCh-HHHHHHHHHHHhh-cCCCCCCceeEEeccCCCchHHHHHHhcC
Q 024907 54 GLKQVVLLTDG-MDTRPYRL---NWPTSTIIFDISP-ERIFKISAEKLEG-VGAKIPRSCLFLHVPLESSNIQQALRAKG 127 (260)
Q Consensus 54 g~~QVV~LGaG-lDTR~~Rl---~~~~~~~~~EvD~-P~v~~~K~~~l~~-~~~~~p~~~~~v~vd~~~~dw~~~L~~~G 127 (260)
+.++|+-+||| +=..+.-+ -.| +.++.-+|. |+.++.-++.++. .+ ..++..++..|+.. +...+ ..
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p-~~~~~giD~d~~ai~~Ar~~~~~~~g--L~~rV~F~~~Da~~--~~~~l--~~ 195 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLP-TTSFHNFDIDPSANDVARRLVSSDPD--LSKRMFFHTADVMD--VTESL--KE 195 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHhhhccC--ccCCcEEEECchhh--ccccc--CC
Confidence 56799999999 52223322 134 556777776 4555555555543 22 22468888888752 11111 23
Q ss_pred CCCCCCeEEEEccCCCCCHHHHHHHHHHHHhccCCCcEEEEeCC
Q 024907 128 FNGNRPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGELP 171 (260)
Q Consensus 128 fd~~~Ptl~i~EGv~Yl~~~~~~~ll~~i~~~~a~gs~l~~d~~ 171 (260)
|| .+|+. .+.|+.+++-.++++.+.+...||+.++.-..
T Consensus 196 FD----lVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 196 YD----VVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred cC----EEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 55 77777 55799877778999999999899999887753
No 23
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=89.04 E-value=3.7 Score=36.38 Aligned_cols=101 Identities=12% Similarity=0.067 Sum_probs=63.8
Q ss_pred cceEEEeCCCCCCcccccCCCCCcEEEEeCh-HHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCCCC
Q 024907 55 LKQVVLLTDGMDTRPYRLNWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRP 133 (260)
Q Consensus 55 ~~QVV~LGaGlDTR~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~~P 133 (260)
...|+-+|||.=.-+..+... +..++-||. |++++.-++.+...+. ..+++++..|+. ++.. .. .+.-
T Consensus 45 ~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~--~~~v~~~~~d~~--~l~~-~~-----~~~f 113 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGV--SDNMQFIHCAAQ--DIAQ-HL-----ETPV 113 (255)
T ss_pred CCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCC--ccceEEEEcCHH--HHhh-hc-----CCCC
Confidence 357999999999877666433 467788888 5676665555555432 125677777764 2321 11 1233
Q ss_pred eEEEEccC-CCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024907 134 SVWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFLG 168 (260)
Q Consensus 134 tl~i~EGv-~Yl~~~~~~~ll~~i~~~~a~gs~l~~ 168 (260)
-++++-++ .|++.. ..+++.+.+...||+.++.
T Consensus 114 D~V~~~~vl~~~~~~--~~~l~~~~~~LkpgG~l~i 147 (255)
T PRK11036 114 DLILFHAVLEWVADP--KSVLQTLWSVLRPGGALSL 147 (255)
T ss_pred CEEEehhHHHhhCCH--HHHHHHHHHHcCCCeEEEE
Confidence 45556666 467533 3678888888889988764
No 24
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=87.94 E-value=4.9 Score=37.86 Aligned_cols=113 Identities=13% Similarity=0.096 Sum_probs=72.9
Q ss_pred cceEEEeCCCCCCcccccCCCCCcEEEEeChHHH-HHHHHHHHhhcCCCC---CCceeEEeccCCCchHHHHHHhcCCCC
Q 024907 55 LKQVVLLTDGMDTRPYRLNWPTSTIIFDISPERI-FKISAEKLEGVGAKI---PRSCLFLHVPLESSNIQQALRAKGFNG 130 (260)
Q Consensus 55 ~~QVV~LGaGlDTR~~Rl~~~~~~~~~EvD~P~v-~~~K~~~l~~~~~~~---p~~~~~v~vd~~~~dw~~~L~~~Gfd~ 130 (260)
..||..||||-=--..+.+-..--.++-+|..+| |+.-++..+...... .=...++++|.....+.+.+. +
T Consensus 118 ~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e-----~ 192 (389)
T KOG1975|consen 118 GDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLE-----F 192 (389)
T ss_pred ccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhcc-----C
Confidence 4689999998754443433222345888898876 222222222221110 013678888887666776663 2
Q ss_pred CCC--eEEEEccCC-C-C-CHHHHHHHHHHHHhccCCCcEEEEeCCh
Q 024907 131 NRP--SVWAIQGLP-V-M-TLASFEDVLLLVGSLAMNKCLFLGELPA 172 (260)
Q Consensus 131 ~~P--tl~i~EGv~-Y-l-~~~~~~~ll~~i~~~~a~gs~l~~d~~~ 172 (260)
..| -++.++=++ | + +.++++.+|+.++++..||+.++...|+
T Consensus 193 ~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPd 239 (389)
T KOG1975|consen 193 KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPD 239 (389)
T ss_pred CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCc
Confidence 344 466666664 7 4 5778899999999999999999999885
No 25
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=86.94 E-value=5.1 Score=34.20 Aligned_cols=97 Identities=7% Similarity=-0.068 Sum_probs=60.3
Q ss_pred ceEEEeCCCCCCcccccCCCCCcEEEEeCh-HHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCCCCe
Q 024907 56 KQVVLLTDGMDTRPYRLNWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPS 134 (260)
Q Consensus 56 ~QVV~LGaGlDTR~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~~Pt 134 (260)
..|+-+|||.=.-+..|... +.++.=+|. |+.++.-++..+..+. .+.+.+..|+...+ ++..- -
T Consensus 32 ~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~---~~v~~~~~d~~~~~---------~~~~f-D 97 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENL---DNLHTAVVDLNNLT---------FDGEY-D 97 (197)
T ss_pred CcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCC---CcceEEecChhhCC---------cCCCc-C
Confidence 57999999986655555332 456777777 5556554444444321 14556666654211 11111 2
Q ss_pred EEEEccC-CCCCHHHHHHHHHHHHhccCCCcEE
Q 024907 135 VWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLF 166 (260)
Q Consensus 135 l~i~EGv-~Yl~~~~~~~ll~~i~~~~a~gs~l 166 (260)
++++-++ .|++++....+++.+.++..||+.+
T Consensus 98 ~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~ 130 (197)
T PRK11207 98 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYN 130 (197)
T ss_pred EEEEecchhhCCHHHHHHHHHHHHHHcCCCcEE
Confidence 4555555 4678888899999999998898874
No 26
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=86.11 E-value=1.6 Score=37.81 Aligned_cols=101 Identities=6% Similarity=-0.094 Sum_probs=61.6
Q ss_pred cceEEEeCCCCCCcccccCCCCCcEEEEeChHHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCCCCe
Q 024907 55 LKQVVLLTDGMDTRPYRLNWPTSTIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPS 134 (260)
Q Consensus 55 ~~QVV~LGaGlDTR~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~~Pt 134 (260)
..+++-||||.===+.-|... |..|.=+|.-++--.|.+.+.+... . ..+...+|++..++. ..=-
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~-G~~VtAvD~s~~al~~l~~~a~~~~-l--~i~~~~~Dl~~~~~~----------~~yD 96 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQ-GFDVTAVDISPVALEKLQRLAEEEG-L--DIRTRVADLNDFDFP----------EEYD 96 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHT-T-EEEEEESSHHHHHHHHHHHHHTT----TEEEEE-BGCCBS-T----------TTEE
T ss_pred CCcEEEcCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHhhcC-c--eeEEEEecchhcccc----------CCcC
Confidence 458999999975434444332 5666666665544334444444321 1 366777787643331 1124
Q ss_pred EEEEccC-CCCCHHHHHHHHHHHHhccCCCcEEEEe
Q 024907 135 VWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFLGE 169 (260)
Q Consensus 135 l~i~EGv-~Yl~~~~~~~ll~~i~~~~a~gs~l~~d 169 (260)
++++-+| +||.++....+++.|.+...||+.+++.
T Consensus 97 ~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 97 FIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp EEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEE
Confidence 7777788 7999999999999999887888876653
No 27
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=84.85 E-value=6.3 Score=36.58 Aligned_cols=102 Identities=16% Similarity=0.153 Sum_probs=61.1
Q ss_pred ceEEEeCCCCCCcccccCCCCCcEEEEeChHHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCCCCeE
Q 024907 56 KQVVLLTDGMDTRPYRLNWPTSTIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPSV 135 (260)
Q Consensus 56 ~QVV~LGaGlDTR~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~~Ptl 135 (260)
+.|+-+|||.=.-.+++.......++-||.....-.+.+........ ..+++++..|++. +.. ...| -+
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~-~~~i~~~~~d~e~--lp~---~~~F-----D~ 192 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGN-DQRAHLLPLGIEQ--LPA---LKAF-----DT 192 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCC-CCCeEEEeCCHHH--CCC---cCCc-----CE
Confidence 58999999999888888322223588888755433222222221111 1267788877652 210 1223 35
Q ss_pred EEEccCCCCCHHHHHHHHHHHHhccCCCcEEEEe
Q 024907 136 WAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGE 169 (260)
Q Consensus 136 ~i~EGv~Yl~~~~~~~ll~~i~~~~a~gs~l~~d 169 (260)
+++-|++|-.. +...+|+.+.+...||+.++++
T Consensus 193 V~s~~vl~H~~-dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 193 VFSMGVLYHRR-SPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred EEECChhhccC-CHHHHHHHHHHhcCCCcEEEEE
Confidence 66777755322 2356788888888899998876
No 28
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=84.67 E-value=14 Score=34.28 Aligned_cols=102 Identities=12% Similarity=0.113 Sum_probs=57.7
Q ss_pred ceEEEeCCCCCCcccccCCCCCcEEEEeChHHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCCCCeE
Q 024907 56 KQVVLLTDGMDTRPYRLNWPTSTIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPSV 135 (260)
Q Consensus 56 ~QVV~LGaGlDTR~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~~Ptl 135 (260)
+.|+-+|||-=.-.+++-......++-||.-..+-...+..+..... ..++++...++. ++.. ...|| +
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~-~~~v~~~~~~ie--~lp~---~~~FD-----~ 191 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDN-DKRAILEPLGIE--QLHE---LYAFD-----T 191 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhcc-CCCeEEEECCHH--HCCC---CCCcC-----E
Confidence 58999999987766676322223688999755432211122211111 125667776654 2210 01233 5
Q ss_pred EEEccCCCCCHHHHHHHHHHHHhccCCCcEEEEe
Q 024907 136 WAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGE 169 (260)
Q Consensus 136 ~i~EGv~Yl~~~~~~~ll~~i~~~~a~gs~l~~d 169 (260)
+++.|++|.-++ ....|+.+.+...||+.++++
T Consensus 192 V~s~gvL~H~~d-p~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 192 VFSMGVLYHRKS-PLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred EEEcchhhccCC-HHHHHHHHHHhcCCCCEEEEE
Confidence 667787543222 245788888888899988765
No 29
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=84.35 E-value=6.8 Score=35.47 Aligned_cols=97 Identities=8% Similarity=-0.039 Sum_probs=62.2
Q ss_pred ceEEEeCCCCCCcccccCCCCCcEEEEeCh-HHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCCCCe
Q 024907 56 KQVVLLTDGMDTRPYRLNWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPS 134 (260)
Q Consensus 56 ~QVV~LGaGlDTR~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~~Pt 134 (260)
..|+-+|||.=.-+..+... +.+++=||. |.+++.=++..+..+ . +++....|++...+ . ..--
T Consensus 122 ~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~~ai~~~~~~~~~~~--l--~v~~~~~D~~~~~~-----~-----~~fD 186 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALL-GFDVTAVDINQQSLENLQEIAEKEN--L--NIRTGLYDINSASI-----Q-----EEYD 186 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcC--C--ceEEEEechhcccc-----c-----CCcc
Confidence 47999999985555555332 456777777 455554333334332 1 45666666653221 1 2234
Q ss_pred EEEEccC-CCCCHHHHHHHHHHHHhccCCCcEEE
Q 024907 135 VWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFL 167 (260)
Q Consensus 135 l~i~EGv-~Yl~~~~~~~ll~~i~~~~a~gs~l~ 167 (260)
++++.++ ++++++....+++.+.+...||+.++
T Consensus 187 ~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l 220 (287)
T PRK12335 187 FILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNL 220 (287)
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEE
Confidence 7888888 57888889999999999888988743
No 30
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=84.04 E-value=3.1 Score=37.53 Aligned_cols=136 Identities=15% Similarity=0.159 Sum_probs=85.4
Q ss_pred eEEEeCCCCCCccccc--CCC-CCcEEEEeChH-HHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCCC
Q 024907 57 QVVLLTDGMDTRPYRL--NWP-TSTIIFDISPE-RIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNR 132 (260)
Q Consensus 57 QVV~LGaGlDTR~~Rl--~~~-~~~~~~EvD~P-~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~~ 132 (260)
.|.-+|||-=..-|=+ ..+ +++.+|-.|+. ..++ ++++.....+.+++-...|+..++|......+++|
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~----~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD--- 146 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIE----LVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVD--- 146 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHH----HHHhccccchhhhcccceeccchhccCCCCcCccc---
Confidence 4788899988877776 222 25999999994 4433 34444333345677777888877766665555454
Q ss_pred CeEEEEccCCCCCHHHHHHHHHHHHhccCCCcEEEE-eCCh-hhhhhh------c--C--CCcc-------hhHHHHHHH
Q 024907 133 PSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLG-ELPA-WLAETE------F--G--NKST-------TEKWMDKLF 193 (260)
Q Consensus 133 Ptl~i~EGv~Yl~~~~~~~ll~~i~~~~a~gs~l~~-d~~~-~~~~~~------~--~--~~~~-------~~~w~~~~~ 193 (260)
.+.+.=.+.=+.++.....+..+..+..||+.|+| ||.. .++-.. . . ++.+ +..-+.++|
T Consensus 147 -~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f 225 (264)
T KOG2361|consen 147 -IITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELF 225 (264)
T ss_pred -eEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHH
Confidence 32222222346789999999999999889887765 6642 222110 0 0 1222 233367889
Q ss_pred HhCCcee
Q 024907 194 MSNGFGV 200 (260)
Q Consensus 194 ~~~Gw~~ 200 (260)
...||..
T Consensus 226 ~~agf~~ 232 (264)
T KOG2361|consen 226 TKAGFEE 232 (264)
T ss_pred Hhcccch
Confidence 9999984
No 31
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=83.54 E-value=14 Score=32.50 Aligned_cols=108 Identities=9% Similarity=0.021 Sum_probs=62.4
Q ss_pred CcceEEEeC--CCCCCcccc--cCCCCCcEEEEeChHHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCC
Q 024907 54 GLKQVVLLT--DGMDTRPYR--LNWPTSTIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFN 129 (260)
Q Consensus 54 g~~QVV~LG--aGlDTR~~R--l~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd 129 (260)
+.+.|+.+| +|+.+-..= ++....+.-+|+|. +.++.-++.++..+.. .+.+++..|.. ++...|...+-
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~-~~~~~A~~n~~~~gl~--~~i~~~~gda~--~~L~~l~~~~~- 141 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDK-EAYEVGLEFIKKAGVD--HKINFIQSDAL--SALDQLLNNDP- 141 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCH-HHHHHHHHHHHHcCCC--CcEEEEEccHH--HHHHHHHhCCC-
Confidence 456899999 466554322 22223566677775 4445545556665432 35777777764 34555543211
Q ss_pred CCCCeEEEEccCCCCCHHHHHHHHHHHHhccCCCcEEEEeCC
Q 024907 130 GNRPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGELP 171 (260)
Q Consensus 130 ~~~Ptl~i~EGv~Yl~~~~~~~ll~~i~~~~a~gs~l~~d~~ 171 (260)
....-++...+- +.....++..+..+..||+.+++|-.
T Consensus 142 ~~~fD~VfiDa~----k~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 142 KPEFDFAFVDAD----KPNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred CCCCCEEEECCC----HHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 122335555543 34445667777778889999999854
No 32
>PRK08317 hypothetical protein; Provisional
Probab=83.36 E-value=26 Score=29.54 Aligned_cols=178 Identities=11% Similarity=0.071 Sum_probs=87.2
Q ss_pred cceEEEeCCCCCCcccccC--CCCCcEEEEeChH-HHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCC
Q 024907 55 LKQVVLLTDGMDTRPYRLN--WPTSTIIFDISPE-RIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGN 131 (260)
Q Consensus 55 ~~QVV~LGaGlDTR~~Rl~--~~~~~~~~EvD~P-~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~ 131 (260)
...|+.+|||.-.-...+. .+...+++-+|.. ..++.-++..... +.+.+++..|+....+ ...
T Consensus 20 ~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~---------~~~ 86 (241)
T PRK08317 20 GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL----GPNVEFVRGDADGLPF---------PDG 86 (241)
T ss_pred CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC----CCceEEEecccccCCC---------CCC
Confidence 3579999999866444441 2224567777764 3333222221111 2367777777652221 122
Q ss_pred CCeEEEEccC-CCCCHHHHHHHHHHHHhccCCCcEEEEeCChhh------------hhhh---c-CC-CcchhHHHHHHH
Q 024907 132 RPSVWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFLGELPAWL------------AETE---F-GN-KSTTEKWMDKLF 193 (260)
Q Consensus 132 ~Ptl~i~EGv-~Yl~~~~~~~ll~~i~~~~a~gs~l~~d~~~~~------------~~~~---~-~~-~~~~~~w~~~~~ 193 (260)
.--++++-.+ .++.. ...+++.+.++..||+.+++..+.+. .... . .. ......-..+.+
T Consensus 87 ~~D~v~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 164 (241)
T PRK08317 87 SFDAVRSDRVLQHLED--PARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLF 164 (241)
T ss_pred CceEEEEechhhccCC--HHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 2334555444 46543 35577888888788887765432110 0000 0 00 111112234778
Q ss_pred HhCCcee-eeeCHHHHHHHcCCCCCCc----cchhHHHHHHHhcCChHHHHHHHHHHHHhhh
Q 024907 194 MSNGFGV-GMVSYKEVASSLGKELAPG----YYKNILFLAEQLRFSDDQMDTWRRELQRVEE 250 (260)
Q Consensus 194 ~~~Gw~~-~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (260)
..+||.. ++....-. .+...+.. ............+++.++.+.+.++++..++
T Consensus 165 ~~aGf~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 223 (241)
T PRK08317 165 REAGLTDIEVEPYTLI---ETDLKEADKGFGLIRAARRAVEAGGISADEADAWLADLAQLAR 223 (241)
T ss_pred HHcCCCceeEEEEEEe---ccCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 9999974 32111000 01111000 1111112223467899999999999986544
No 33
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=83.32 E-value=12 Score=32.04 Aligned_cols=129 Identities=10% Similarity=-0.063 Sum_probs=71.2
Q ss_pred cceEEEeCCCCCCccccc--CCCCCcEEEEeCh-HHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCC
Q 024907 55 LKQVVLLTDGMDTRPYRL--NWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGN 131 (260)
Q Consensus 55 ~~QVV~LGaGlDTR~~Rl--~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~ 131 (260)
...|+-+|||.=+-..-+ ..| +.+++-||. |+.++.=++.+...+. .+..++..|+. +.+...+....||
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~~~~~~---~~v~~~~~d~~-~~l~~~~~~~~~D-- 113 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVGKALKKIEEEGL---TNLRLLCGDAV-EVLLDMFPDGSLD-- 113 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHHHHHHHHHHcCC---CCEEEEecCHH-HHHHHHcCccccc--
Confidence 358999999998765555 233 456777777 3444443344444321 25677777661 1232222222222
Q ss_pred CCeEEEEccCCCCCH-H-----HHHHHHHHHHhccCCCcEEEEeCChhhhhhhcCCCcchhHHHHHHHHhCCceeee
Q 024907 132 RPSVWAIQGLPVMTL-A-----SFEDVLLLVGSLAMNKCLFLGELPAWLAETEFGNKSTTEKWMDKLFMSNGFGVGM 202 (260)
Q Consensus 132 ~Ptl~i~EGv~Yl~~-~-----~~~~ll~~i~~~~a~gs~l~~d~~~~~~~~~~~~~~~~~~w~~~~~~~~Gw~~~~ 202 (260)
.+++.-+..+... . ....+++.+.+...||+.+++-..... ...+..+.+...||.+++
T Consensus 114 --~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~----------~~~~~~~~~~~~g~~~~~ 178 (202)
T PRK00121 114 --RIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEG----------YAEYMLEVLSAEGGFLVS 178 (202)
T ss_pred --eEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHH----------HHHHHHHHHHhCcccccc
Confidence 4444322233221 1 246688889988889988877543211 112344667889998763
No 34
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=83.15 E-value=14 Score=31.39 Aligned_cols=125 Identities=10% Similarity=0.084 Sum_probs=65.6
Q ss_pred ceEEEeCCCC--CCccc-ccCCCCCcEEEEeCh-HHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCC
Q 024907 56 KQVVLLTDGM--DTRPY-RLNWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGN 131 (260)
Q Consensus 56 ~QVV~LGaGl--DTR~~-Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~ 131 (260)
..|+-+|||- -+... +. .+.+.+++=||. |+.++.=++.++..+. ..+..++..|.. ++...+ + .
T Consensus 42 ~~vlDlG~GtG~~s~~~a~~-~~~~~~v~avD~~~~~~~~a~~n~~~~g~--~~~v~~~~~d~~--~~l~~~-----~-~ 110 (198)
T PRK00377 42 DMILDIGCGTGSVTVEASLL-VGETGKVYAVDKDEKAINLTRRNAEKFGV--LNNIVLIKGEAP--EILFTI-----N-E 110 (198)
T ss_pred CEEEEeCCcCCHHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHhCC--CCCeEEEEechh--hhHhhc-----C-C
Confidence 5799999976 22322 22 122345666666 4454443333343321 135666665543 222221 1 2
Q ss_pred CCeEEEEccCCCCCHHHHHHHHHHHHhccCCCcEEEEeCChhhhhhhcCCCcchhHHHHHHHHhCCceeeeeCH
Q 024907 132 RPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGELPAWLAETEFGNKSTTEKWMDKLFMSNGFGVGMVSY 205 (260)
Q Consensus 132 ~Ptl~i~EGv~Yl~~~~~~~ll~~i~~~~a~gs~l~~d~~~~~~~~~~~~~~~~~~w~~~~~~~~Gw~~~~~~~ 205 (260)
.+-++++.|- ......+++.+.++..||+.++++....- ......+.|..+||.+++...
T Consensus 111 ~~D~V~~~~~----~~~~~~~l~~~~~~LkpgG~lv~~~~~~~----------~~~~~~~~l~~~g~~~~~~~~ 170 (198)
T PRK00377 111 KFDRIFIGGG----SEKLKEIISASWEIIKKGGRIVIDAILLE----------TVNNALSALENIGFNLEITEV 170 (198)
T ss_pred CCCEEEECCC----cccHHHHHHHHHHHcCCCcEEEEEeecHH----------HHHHHHHHHHHcCCCeEEEEE
Confidence 3444555432 22345677777777779999888754210 011234667889997665444
No 35
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=82.92 E-value=14 Score=25.88 Aligned_cols=99 Identities=10% Similarity=0.012 Sum_probs=54.8
Q ss_pred EEEeCCCCCCcccccCCCCCcEEEEeC--hHHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCCCCeE
Q 024907 58 VVLLTDGMDTRPYRLNWPTSTIIFDIS--PERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPSV 135 (260)
Q Consensus 58 VV~LGaGlDTR~~Rl~~~~~~~~~EvD--~P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~~Ptl 135 (260)
|+.+|||.-.-...+......+++=+| ...+...++ ..... ...+..++..|+.. +.. ......-+
T Consensus 2 ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~--~~~------~~~~~~d~ 69 (107)
T cd02440 2 VLDLGCGTGALALALASGPGARVTGVDISPVALELARK-AAAAL---LADNVEVLKGDAEE--LPP------EADESFDV 69 (107)
T ss_pred eEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHH-HHhcc---cccceEEEEcChhh--hcc------ccCCceEE
Confidence 678899876644444222234444444 444333332 11111 12356677766652 211 12345667
Q ss_pred EEEccCC-CCCHHHHHHHHHHHHhccCCCcEEEEe
Q 024907 136 WAIQGLP-VMTLASFEDVLLLVGSLAMNKCLFLGE 169 (260)
Q Consensus 136 ~i~EGv~-Yl~~~~~~~ll~~i~~~~a~gs~l~~d 169 (260)
+++-++. ++ .+....+++.+.....+|+.+++.
T Consensus 70 i~~~~~~~~~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 70 IISDPPLHHL-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred EEEccceeeh-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 7777763 33 566788888888877788877654
No 36
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=82.14 E-value=11 Score=35.22 Aligned_cols=123 Identities=11% Similarity=0.067 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHhhccC------CcceEEEeCCCCCCcccccCCCCCcEEEEeChH-HHHHHHHHHHhhcCCCCCCcee
Q 024907 36 LTTKFIDDKLLRTVNHMD------GLKQVVLLTDGMDTRPYRLNWPTSTIIFDISPE-RIFKISAEKLEGVGAKIPRSCL 108 (260)
Q Consensus 36 ~Rtr~iDd~l~~~~~~~~------g~~QVV~LGaGlDTR~~Rl~~~~~~~~~EvD~P-~v~~~K~~~l~~~~~~~p~~~~ 108 (260)
.|-.+|.+.+.+.+.... ....|+-+|||-=.-...|... +.+++=||.- +.++.-++.....+. ..++.
T Consensus 107 ~R~~~i~~~l~~~~~~~~~~~~~~~g~~ILDIGCG~G~~s~~La~~-g~~V~GID~s~~~i~~Ar~~~~~~~~--~~~i~ 183 (322)
T PLN02396 107 TRLAFIRSTLCRHFSKDPSSAKPFEGLKFIDIGCGGGLLSEPLARM-GATVTGVDAVDKNVKIARLHADMDPV--TSTIE 183 (322)
T ss_pred HHHHHHHHHHHHHhccchhhccCCCCCEEEEeeCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCc--cccee
Confidence 466778777766543110 1236999999977654444333 4567777774 455443333222111 12567
Q ss_pred EEeccCCCchHHHHHHhcCCCCCCCeEEEEccCCCCCHHHHHHHHHHHHhccCCCcEEEEeCC
Q 024907 109 FLHVPLESSNIQQALRAKGFNGNRPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGELP 171 (260)
Q Consensus 109 ~v~vd~~~~dw~~~L~~~Gfd~~~Ptl~i~EGv~Yl~~~~~~~ll~~i~~~~a~gs~l~~d~~ 171 (260)
++..+++ ++. .....|| .++..+.+-.+... ..+++.+.++..||+.+++..+
T Consensus 184 ~~~~dae--~l~--~~~~~FD----~Vi~~~vLeHv~d~--~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 184 YLCTTAE--KLA--DEGRKFD----AVLSLEVIEHVANP--AEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred EEecCHH--Hhh--hccCCCC----EEEEhhHHHhcCCH--HHHHHHHHHHcCCCcEEEEEEC
Confidence 7777653 332 1122244 55555544445432 4688888888889998887653
No 37
>PLN02244 tocopherol O-methyltransferase
Probab=81.84 E-value=12 Score=34.98 Aligned_cols=102 Identities=12% Similarity=0.054 Sum_probs=58.9
Q ss_pred cceEEEeCCCCCCcccccCCCCCcEEEEeChH-HHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCCCC
Q 024907 55 LKQVVLLTDGMDTRPYRLNWPTSTIIFDISPE-RIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRP 133 (260)
Q Consensus 55 ~~QVV~LGaGlDTR~~Rl~~~~~~~~~EvD~P-~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~~P 133 (260)
...|+-+|||.=.-...|...-+..+.-||.- ..++.-++..+..+. +.++.++..|+.... +....||
T Consensus 119 ~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~--~~~v~~~~~D~~~~~----~~~~~FD---- 188 (340)
T PLN02244 119 PKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGL--SDKVSFQVADALNQP----FEDGQFD---- 188 (340)
T ss_pred CCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCC--CCceEEEEcCcccCC----CCCCCcc----
Confidence 35799999998776666532114567777764 334433333343332 236788888865211 1122233
Q ss_pred eEEEEccCCCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024907 134 SVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLG 168 (260)
Q Consensus 134 tl~i~EGv~Yl~~~~~~~ll~~i~~~~a~gs~l~~ 168 (260)
.+|..+.+.+++. ...+++.+.....||+.+++
T Consensus 189 ~V~s~~~~~h~~d--~~~~l~e~~rvLkpGG~lvi 221 (340)
T PLN02244 189 LVWSMESGEHMPD--KRKFVQELARVAAPGGRIII 221 (340)
T ss_pred EEEECCchhccCC--HHHHHHHHHHHcCCCcEEEE
Confidence 4555565555542 34677888888888887664
No 38
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=81.49 E-value=6 Score=35.95 Aligned_cols=117 Identities=9% Similarity=0.027 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhhccCCcceEEEeCCCCCCcccccCCCCCcEEEEeChHHH-HHHHHHHHhhcCCCCCCceeEEeccCCCc
Q 024907 39 KFIDDKLLRTVNHMDGLKQVVLLTDGMDTRPYRLNWPTSTIIFDISPERI-FKISAEKLEGVGAKIPRSCLFLHVPLESS 117 (260)
Q Consensus 39 r~iDd~l~~~~~~~~g~~QVV~LGaGlDTR~~Rl~~~~~~~~~EvD~P~v-~~~K~~~l~~~~~~~p~~~~~v~vd~~~~ 117 (260)
+-+|.++.++--+ +| ..|+-+|||-=.-+.++...-++++.=|.+.+. .+.-++.+++.+. +.+++.+..|..
T Consensus 49 ~k~~~~~~~~~l~-~G-~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl--~~~v~v~~~D~~-- 122 (273)
T PF02353_consen 49 RKLDLLCEKLGLK-PG-DRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGL--EDRVEVRLQDYR-- 122 (273)
T ss_dssp HHHHHHHTTTT---TT--EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTS--SSTEEEEES-GG--
T ss_pred HHHHHHHHHhCCC-CC-CEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCC--CCceEEEEeecc--
Confidence 4466666654221 44 579999999888888883221455555555322 2333444455442 346667666653
Q ss_pred hHHHHHHhcCCCCCCCeEEEEccCCCCCHHHHHHHHHHHHhccCCCcEEEEeC
Q 024907 118 NIQQALRAKGFNGNRPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGEL 170 (260)
Q Consensus 118 dw~~~L~~~Gfd~~~Ptl~i~EGv~Yl~~~~~~~ll~~i~~~~a~gs~l~~d~ 170 (260)
++.. .|| -++.+|.+-.+..+....+++.+.++..||+.++...
T Consensus 123 ~~~~-----~fD----~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 123 DLPG-----KFD----RIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp G--------S-S----EEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred ccCC-----CCC----EEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 3322 455 4677766656777778899999999999999887653
No 39
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=79.49 E-value=4.9 Score=37.64 Aligned_cols=132 Identities=17% Similarity=0.101 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHhhccCCcceEEEeCC--CCCCcccccCCCCCcEEEEeChHHHHHHHHHHHhhcCCC----CC---C
Q 024907 35 CLTTKFIDDKLLRTVNHMDGLKQVVLLTD--GMDTRPYRLNWPTSTIIFDISPERIFKISAEKLEGVGAK----IP---R 105 (260)
Q Consensus 35 ~~Rtr~iDd~l~~~~~~~~g~~QVV~LGa--GlDTR~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~----~p---~ 105 (260)
.+-+.+|..++.+..... ....|+-||| |-|..=|.-.......-++++.-.+-+.+.+. .+.... .+ -
T Consensus 44 wvKs~LI~~~~~~~~~~~-~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry-~~~~~~~~~~~~~~~f 121 (331)
T PF03291_consen 44 WVKSVLIQKYAKKVKQNR-PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERY-KQLKKRNNSKQYRFDF 121 (331)
T ss_dssp HHHHHHHHHHCHCCCCTT-TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHH-HHHHTSTT-HTSEECC
T ss_pred HHHHHHHHHHHHhhhccC-CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHH-HHhccccccccccccc
Confidence 345566766665433221 3468999999 58998888754433333444444444444443 221110 00 1
Q ss_pred ceeEEeccCCCchHHHHHHhcCCCCCCC-eEEEEccCC-C-C-CHHHHHHHHHHHHhccCCCcEEEEeCCh
Q 024907 106 SCLFLHVPLESSNIQQALRAKGFNGNRP-SVWAIQGLP-V-M-TLASFEDVLLLVGSLAMNKCLFLGELPA 172 (260)
Q Consensus 106 ~~~~v~vd~~~~dw~~~L~~~Gfd~~~P-tl~i~EGv~-Y-l-~~~~~~~ll~~i~~~~a~gs~l~~d~~~ 172 (260)
.+.++..|.....+.+.+. +...+ -++.++-.+ | + +++.++.+|+.++++..||+.++...|+
T Consensus 122 ~a~f~~~D~f~~~l~~~~~----~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 122 IAEFIAADCFSESLREKLP----PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp EEEEEESTTCCSHHHCTSS----STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred hhheeccccccchhhhhcc----ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 3455666655433333332 11122 366666654 7 3 6778888999999999999998887764
No 40
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=77.14 E-value=15 Score=35.48 Aligned_cols=100 Identities=11% Similarity=0.078 Sum_probs=63.2
Q ss_pred ceEEEeCCCCCCcccccCCCCCcEEEEeChH-HHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCCCCe
Q 024907 56 KQVVLLTDGMDTRPYRLNWPTSTIIFDISPE-RIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPS 134 (260)
Q Consensus 56 ~QVV~LGaGlDTR~~Rl~~~~~~~~~EvD~P-~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~~Pt 134 (260)
..|+-||||.=.-..-|... ..+++-||.- ++++..++ .... ..+..++..|+...++ .+..+..-
T Consensus 39 ~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~-~~~~----~~~i~~~~~d~~~~~~-------~~~~~~fD 105 (475)
T PLN02336 39 KSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNES-INGH----YKNVKFMCADVTSPDL-------NISDGSVD 105 (475)
T ss_pred CEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHH-Hhcc----CCceEEEEeccccccc-------CCCCCCEE
Confidence 47999999987654444221 2356777763 44443222 2221 1257788888753222 12333455
Q ss_pred EEEEccC-CCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024907 135 VWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFLG 168 (260)
Q Consensus 135 l~i~EGv-~Yl~~~~~~~ll~~i~~~~a~gs~l~~ 168 (260)
++++.++ .|++.++...+++.+.+...||+.+++
T Consensus 106 ~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~ 140 (475)
T PLN02336 106 LIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFF 140 (475)
T ss_pred EEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 7777777 588888889999999998888888765
No 41
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=76.91 E-value=33 Score=29.26 Aligned_cols=99 Identities=13% Similarity=0.063 Sum_probs=56.1
Q ss_pred cceEEEeCCCCCCcccccCCCCCcEEEEeCh-HHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCCCC
Q 024907 55 LKQVVLLTDGMDTRPYRLNWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRP 133 (260)
Q Consensus 55 ~~QVV~LGaGlDTR~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~~P 133 (260)
...|+-+|||.=.-...+... +..++-+|. +++++.-++.+...+. ..+.+++..|+... ...||
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~--~~~i~~~~~d~~~~-------~~~fD---- 129 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARR-GAKVVASDISPQMVEEARERAPEAGL--AGNITFEVGDLESL-------LGRFD---- 129 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCC--ccCcEEEEcCchhc-------cCCcC----
Confidence 357999999987655555221 234666666 4444444444444321 12567777764311 12233
Q ss_pred eEEEEccC-CCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024907 134 SVWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFLG 168 (260)
Q Consensus 134 tl~i~EGv-~Yl~~~~~~~ll~~i~~~~a~gs~l~~ 168 (260)
++++-.+ .+++.+....+++.+.++..++..+.+
T Consensus 130 -~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~ 164 (230)
T PRK07580 130 -TVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTF 164 (230)
T ss_pred -EEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence 4444455 477888888999999887544433333
No 42
>PLN02366 spermidine synthase
Probab=76.62 E-value=27 Score=32.38 Aligned_cols=108 Identities=8% Similarity=-0.002 Sum_probs=56.5
Q ss_pred CCcceEEEeCCCCCCccccc-CCC--CCcEEEEeChHHHHHHHHHHHhhcCC-CCCCceeEEeccCCCchHHHHHHhcCC
Q 024907 53 DGLKQVVLLTDGMDTRPYRL-NWP--TSTIIFDISPERIFKISAEKLEGVGA-KIPRSCLFLHVPLESSNIQQALRAKGF 128 (260)
Q Consensus 53 ~g~~QVV~LGaGlDTR~~Rl-~~~--~~~~~~EvD~P~v~~~K~~~l~~~~~-~~p~~~~~v~vd~~~~dw~~~L~~~Gf 128 (260)
+..+.|+++|+|-=.-+.-+ ..| ..+.++|+| |+|++.-++.+..... ...++++++..|.. .+.+......|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD-~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~--~~l~~~~~~~y 166 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEID-KMVIDVSKKFFPDLAVGFDDPRVNLHIGDGV--EFLKNAPEGTY 166 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECC-HHHHHHHHHhhhhhccccCCCceEEEEChHH--HHHhhccCCCC
Confidence 45678999999965533222 333 367889999 6677766666554211 01125666666643 23332211123
Q ss_pred CCCCCeEEEEccC-CCCCHH--HHHHHHHHHHhccCCCcEEEE
Q 024907 129 NGNRPSVWAIQGL-PVMTLA--SFEDVLLLVGSLAMNKCLFLG 168 (260)
Q Consensus 129 d~~~Ptl~i~EGv-~Yl~~~--~~~~ll~~i~~~~a~gs~l~~ 168 (260)
| ++++.+- ...+.. -....++.+.+...||+.++.
T Consensus 167 D-----vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 167 D-----AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred C-----EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 2 3344332 211111 124456666666667776654
No 43
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=76.48 E-value=61 Score=31.34 Aligned_cols=135 Identities=11% Similarity=-0.015 Sum_probs=73.1
Q ss_pred cceEEEeCCCCCCcccccCCCCCcEEEEeChH-HHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCCCC
Q 024907 55 LKQVVLLTDGMDTRPYRLNWPTSTIIFDISPE-RIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRP 133 (260)
Q Consensus 55 ~~QVV~LGaGlDTR~~Rl~~~~~~~~~EvD~P-~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~~P 133 (260)
...|+-+|||.=.-+..|....+.+++=+|.. +.++.-++..... ..++.++..|+.... +..+.-
T Consensus 267 ~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~----~~~v~~~~~d~~~~~---------~~~~~f 333 (475)
T PLN02336 267 GQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGR----KCSVEFEVADCTKKT---------YPDNSF 333 (475)
T ss_pred CCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcC----CCceEEEEcCcccCC---------CCCCCE
Confidence 35799999998765555532114567777774 4444322222211 225677777765321 112233
Q ss_pred eEEEEccC-CCCCHHHHHHHHHHHHhccCCCcEEEEe-CCh-h------hhhhh--cCCCcchhHHHHHHHHhCCcee-e
Q 024907 134 SVWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFLGE-LPA-W------LAETE--FGNKSTTEKWMDKLFMSNGFGV-G 201 (260)
Q Consensus 134 tl~i~EGv-~Yl~~~~~~~ll~~i~~~~a~gs~l~~d-~~~-~------~~~~~--~~~~~~~~~w~~~~~~~~Gw~~-~ 201 (260)
-++++-++ .+++. -..+++.+.+...||+.+++. +.. + ..... .+..........+++.++||.+ +
T Consensus 334 D~I~s~~~l~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~ 411 (475)
T PLN02336 334 DVIYSRDTILHIQD--KPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVI 411 (475)
T ss_pred EEEEECCcccccCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeee
Confidence 46777666 46643 346788888888898887654 321 0 00100 1111122233457888999986 4
Q ss_pred eeC
Q 024907 202 MVS 204 (260)
Q Consensus 202 ~~~ 204 (260)
+.+
T Consensus 412 ~~d 414 (475)
T PLN02336 412 AED 414 (475)
T ss_pred eec
Confidence 443
No 44
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=76.42 E-value=26 Score=32.05 Aligned_cols=111 Identities=14% Similarity=0.051 Sum_probs=69.6
Q ss_pred CCcceEEEeCCCCCCccccc-C----CCCCcEEEEeChHHHH-HHH-HHHHhhcCCCCCCceeEEeccCCCchHHHHHHh
Q 024907 53 DGLKQVVLLTDGMDTRPYRL-N----WPTSTIIFDISPERIF-KIS-AEKLEGVGAKIPRSCLFLHVPLESSNIQQALRA 125 (260)
Q Consensus 53 ~g~~QVV~LGaGlDTR~~Rl-~----~~~~~~~~EvD~P~v~-~~K-~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~ 125 (260)
-|.+..|-||+|-.|..-+| + ...-.+|+-||....+ .-- ++++.+. | +.....+. .++...|..
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y----~-~l~v~~l~---~~~~~~La~ 148 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREY----P-GLEVNALC---GDYELALAE 148 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhC----C-CCeEeehh---hhHHHHHhc
Confidence 46779999999999976665 1 1224778888886543 222 3333333 2 33333332 234445543
Q ss_pred cCCCCCCCeEEEEccC-C-CCCHHHHHHHHHHHHhccCCCcEE--EEeCChh
Q 024907 126 KGFNGNRPSVWAIQGL-P-VMTLASFEDVLLLVGSLAMNKCLF--LGELPAW 173 (260)
Q Consensus 126 ~Gfd~~~Ptl~i~EGv-~-Yl~~~~~~~ll~~i~~~~a~gs~l--~~d~~~~ 173 (260)
- ...-.-+|+.-|- + -|++++-...|..++..+.||-.+ ..|...+
T Consensus 149 ~--~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~ 198 (321)
T COG4301 149 L--PRGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRKP 198 (321)
T ss_pred c--cCCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccCH
Confidence 2 2223357888887 4 599999999999999988888754 3666543
No 45
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=74.01 E-value=32 Score=29.62 Aligned_cols=109 Identities=13% Similarity=0.138 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhhccCCcceEEEeCCCCCCcccccC-CCCCcEEEEeCh-HHHHHHHHHHHhhcCCCCCCceeEEeccCCC
Q 024907 39 KFIDDKLLRTVNHMDGLKQVVLLTDGMDTRPYRLN-WPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLES 116 (260)
Q Consensus 39 r~iDd~l~~~~~~~~g~~QVV~LGaGlDTR~~Rl~-~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~ 116 (260)
.++...+... +....|+-+|||.=.....|. ..++..++=||. |++++.-++.+ + +..++..|+..
T Consensus 32 ~~~~~~l~~~----~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-------~-~~~~~~~d~~~ 99 (204)
T TIGR03587 32 AMFARALNRL----PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-------P-NINIIQGSLFD 99 (204)
T ss_pred HHHHHHHHhc----CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-------C-CCcEEEeeccC
Confidence 4455555432 234579999999876555452 212466777776 34544332221 1 24455555431
Q ss_pred chHHHHHHhcCCCCCCCeEEEEccC-CCCCHHHHHHHHHHHHhccCCCcEEEEeC
Q 024907 117 SNIQQALRAKGFNGNRPSVWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFLGEL 170 (260)
Q Consensus 117 ~dw~~~L~~~Gfd~~~Ptl~i~EGv-~Yl~~~~~~~ll~~i~~~~a~gs~l~~d~ 170 (260)
.+..+.--++++-++ .+++++.....++.+.+.+ .+-.++.++
T Consensus 100 ----------~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~-~~~v~i~e~ 143 (204)
T TIGR03587 100 ----------PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS-NRYILIAEY 143 (204)
T ss_pred ----------CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc-CcEEEEEEe
Confidence 122233457778887 4788888899999999876 444556665
No 46
>PRK00811 spermidine synthase; Provisional
Probab=72.74 E-value=35 Score=30.94 Aligned_cols=108 Identities=9% Similarity=0.087 Sum_probs=58.9
Q ss_pred CCcceEEEeCCCCCCccccc-CC--CCCcEEEEeChHHHHHHHHHHHhhcCCC--CCCceeEEeccCCCchHHHHHHhcC
Q 024907 53 DGLKQVVLLTDGMDTRPYRL-NW--PTSTIIFDISPERIFKISAEKLEGVGAK--IPRSCLFLHVPLESSNIQQALRAKG 127 (260)
Q Consensus 53 ~g~~QVV~LGaGlDTR~~Rl-~~--~~~~~~~EvD~P~v~~~K~~~l~~~~~~--~p~~~~~v~vd~~~~dw~~~L~~~G 127 (260)
+..+.|++||||-=.-+..+ .. ...+..+|+|.. +++.-++.+...... ...+++++..|.. .|... .
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~-vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~--~~l~~-~--- 147 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDER-VVEVCRKYLPEIAGGAYDDPRVELVIGDGI--KFVAE-T--- 147 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHH-HHHHHHHHhHHhccccccCCceEEEECchH--HHHhh-C---
Confidence 44568999999865433322 33 236889999975 445444555543210 0125667766653 33322 1
Q ss_pred CCCCCCeEEEEccC-CCCCHHH--HHHHHHHHHhccCCCcEEEEe
Q 024907 128 FNGNRPSVWAIQGL-PVMTLAS--FEDVLLLVGSLAMNKCLFLGE 169 (260)
Q Consensus 128 fd~~~Ptl~i~EGv-~Yl~~~~--~~~ll~~i~~~~a~gs~l~~d 169 (260)
.++==+|++... .+-+... ..+.++.+.+...+|+.++..
T Consensus 148 --~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 148 --ENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred --CCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 122235555544 4432222 255677777777788877764
No 47
>PRK06202 hypothetical protein; Provisional
Probab=72.65 E-value=44 Score=28.87 Aligned_cols=102 Identities=13% Similarity=0.041 Sum_probs=58.1
Q ss_pred CcceEEEeCCCCCCcccccC-----CCCCcEEEEeCh-HHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcC
Q 024907 54 GLKQVVLLTDGMDTRPYRLN-----WPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKG 127 (260)
Q Consensus 54 g~~QVV~LGaGlDTR~~Rl~-----~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~G 127 (260)
+...|+-||||.-.-...|. .+.+.+++=||. |++++.-++.... .+..+...+.+. +.. .
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~------~~~~~~~~~~~~--l~~--~--- 126 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR------PGVTFRQAVSDE--LVA--E--- 126 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc------CCCeEEEEeccc--ccc--c---
Confidence 34579999999876444441 122468999998 5666543333221 134455554431 110 1
Q ss_pred CCCCCCeEEEEccCCCCCHHHHHHHHHHHHhccCCCcEEEEeC
Q 024907 128 FNGNRPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGEL 170 (260)
Q Consensus 128 fd~~~Ptl~i~EGv~Yl~~~~~~~ll~~i~~~~a~gs~l~~d~ 170 (260)
+.+--.++...++-+++.++..++++.+.+.. .|..++-|.
T Consensus 127 -~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~-~~~~~i~dl 167 (232)
T PRK06202 127 -GERFDVVTSNHFLHHLDDAEVVRLLADSAALA-RRLVLHNDL 167 (232)
T ss_pred -CCCccEEEECCeeecCChHHHHHHHHHHHHhc-CeeEEEecc
Confidence 11222444444445788777788999998876 355555554
No 48
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=71.20 E-value=22 Score=31.61 Aligned_cols=100 Identities=11% Similarity=0.018 Sum_probs=57.2
Q ss_pred ceEEEeCCCCCCccccc--CCCCCcEEEEeCh-HHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCCC
Q 024907 56 KQVVLLTDGMDTRPYRL--NWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNR 132 (260)
Q Consensus 56 ~QVV~LGaGlDTR~~Rl--~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~~ 132 (260)
..|+.+|||--.-.+-+ ......+++-||. |+.++.-++.....+. .+..++..|+.. + .+..+.
T Consensus 79 ~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~---~~v~~~~~d~~~--l-------~~~~~~ 146 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY---TNVEFRLGEIEA--L-------PVADNS 146 (272)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC---CCEEEEEcchhh--C-------CCCCCc
Confidence 57999999984322222 1122356888887 6666655555444432 256666666542 1 111112
Q ss_pred CeEEEEccCCCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024907 133 PSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLG 168 (260)
Q Consensus 133 Ptl~i~EGv~Yl~~~~~~~ll~~i~~~~a~gs~l~~ 168 (260)
--++++.+++.+.++ ...+++.+.+...||+.+++
T Consensus 147 fD~Vi~~~v~~~~~d-~~~~l~~~~r~LkpGG~l~i 181 (272)
T PRK11873 147 VDVIISNCVINLSPD-KERVFKEAFRVLKPGGRFAI 181 (272)
T ss_pred eeEEEEcCcccCCCC-HHHHHHHHHHHcCCCcEEEE
Confidence 236777777544332 34577888888788887664
No 49
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=70.38 E-value=8.5 Score=35.25 Aligned_cols=109 Identities=10% Similarity=0.129 Sum_probs=54.9
Q ss_pred ceEEEeCCC-CCCcccccC--CCCCcEEEEeCh-HHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCC
Q 024907 56 KQVVLLTDG-MDTRPYRLN--WPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGN 131 (260)
Q Consensus 56 ~QVV~LGaG-lDTR~~Rl~--~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~ 131 (260)
..|+.+|+| |=..+.-|. ...++.+..+|. |+..+.-+++++.... ...+..++..|... ....|. .||
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~-L~~~m~f~~~d~~~--~~~dl~--~~D-- 194 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG-LSKRMSFITADVLD--VTYDLK--EYD-- 194 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H-H-SSEEEEES-GGG--G-GG------S--
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc-ccCCeEEEecchhc--cccccc--cCC--
Confidence 589999999 433455552 123566666665 4555666677762211 12367888888652 222232 233
Q ss_pred CCeEEEEccCCCCCHHHHHHHHHHHHhccCCCcEEEEeCChhh
Q 024907 132 RPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGELPAWL 174 (260)
Q Consensus 132 ~Ptl~i~EGv~Yl~~~~~~~ll~~i~~~~a~gs~l~~d~~~~~ 174 (260)
++|++--| .++.+.-.++|..|.+..++|+.+++=+...+
T Consensus 195 --vV~lAalV-g~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~Gl 234 (276)
T PF03059_consen 195 --VVFLAALV-GMDAEPKEEILEHLAKHMAPGARLVVRSAHGL 234 (276)
T ss_dssp --EEEE-TT--S----SHHHHHHHHHHHS-TTSEEEEEE--GG
T ss_pred --EEEEhhhc-ccccchHHHHHHHHHhhCCCCcEEEEecchhh
Confidence 55555444 77877888999999999999999988755433
No 50
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=68.23 E-value=48 Score=30.98 Aligned_cols=115 Identities=16% Similarity=0.190 Sum_probs=65.8
Q ss_pred HHHHHHhhccCCcceEEEeCCCCCCcccccCCCCCcEEEEeChHHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHH
Q 024907 43 DKLLRTVNHMDGLKQVVLLTDGMDTRPYRLNWPTSTIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQA 122 (260)
Q Consensus 43 d~l~~~~~~~~g~~QVV~LGaGlDTR~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~ 122 (260)
+.|..++....| +.|.-+|||-==-.||+-..+.-.++=+|.-...-..-+.++..-... ...++++..++ ++..
T Consensus 105 ~rl~p~l~~L~g-k~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~-~~~~~lplgvE--~Lp~- 179 (315)
T PF08003_consen 105 DRLLPHLPDLKG-KRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQD-PPVFELPLGVE--DLPN- 179 (315)
T ss_pred HHHHhhhCCcCC-CEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCC-ccEEEcCcchh--hccc-
Confidence 334455543344 589999999877888995333345788886544433333444332111 13445544443 3433
Q ss_pred HHhcCCCCCCCeEEEEccCCCCCHHHHHHHHHHHHhccCCCcEEEEeC
Q 024907 123 LRAKGFNGNRPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGEL 170 (260)
Q Consensus 123 L~~~Gfd~~~Ptl~i~EGv~Yl~~~~~~~ll~~i~~~~a~gs~l~~d~ 170 (260)
+ ..|| ++++-||+|=..+-+. .|+.+.+...+|++++.|.
T Consensus 180 ~--~~FD-----tVF~MGVLYHrr~Pl~-~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 180 L--GAFD-----TVFSMGVLYHRRSPLD-HLKQLKDSLRPGGELVLET 219 (315)
T ss_pred c--CCcC-----EEEEeeehhccCCHHH-HHHHHHHhhCCCCEEEEEE
Confidence 2 3465 6788899884333222 4555666566898998873
No 51
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=67.80 E-value=46 Score=31.69 Aligned_cols=96 Identities=13% Similarity=0.089 Sum_probs=57.4
Q ss_pred ceEEEeCCCCCCcccccCCCCCcEEEEeCh-HHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCCCCe
Q 024907 56 KQVVLLTDGMDTRPYRLNWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPS 134 (260)
Q Consensus 56 ~QVV~LGaGlDTR~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~~Pt 134 (260)
..|+-+|||.=.-+..+....+.+++-||. |+.++.-++..+. . ..++...|.. .+ ...||
T Consensus 169 ~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~----l--~v~~~~~D~~------~l-~~~fD----- 230 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG----L--PVEIRLQDYR------DL-NGQFD----- 230 (383)
T ss_pred CEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc----C--eEEEEECchh------hc-CCCCC-----
Confidence 579999999877666663222567777777 4444443333321 1 2344444432 11 12233
Q ss_pred EEEEccC-CCCCHHHHHHHHHHHHhccCCCcEEEEe
Q 024907 135 VWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFLGE 169 (260)
Q Consensus 135 l~i~EGv-~Yl~~~~~~~ll~~i~~~~a~gs~l~~d 169 (260)
++++-++ .++.......+++.+.++..||+.+++.
T Consensus 231 ~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 231 RIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred EEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 3444444 4566667788999999998999987764
No 52
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=67.38 E-value=1.4 Score=32.81 Aligned_cols=30 Identities=13% Similarity=0.099 Sum_probs=18.1
Q ss_pred EEEEccC-CCCCHHHHHHHHHHHHhccCCCcEE
Q 024907 135 VWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLF 166 (260)
Q Consensus 135 l~i~EGv-~Yl~~~~~~~ll~~i~~~~a~gs~l 166 (260)
+|++=+| .|+ ++...+++.+.++..||+.+
T Consensus 69 ~V~~~~vl~~l--~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 69 LVVASNVLHHL--EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp EEEEE-TTS----S-HHHHHHHHTTT-TSS-EE
T ss_pred eehhhhhHhhh--hhHHHHHHHHHHHcCCCCCC
Confidence 4455566 577 66778999999998898764
No 53
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=64.96 E-value=1e+02 Score=27.38 Aligned_cols=48 Identities=15% Similarity=0.012 Sum_probs=31.4
Q ss_pred HHHHHHHHhccCCCcEEEEeCChhhhhhhcCCCcchhHHHHHHHHhCCceeeeeCHHHH
Q 024907 150 EDVLLLVGSLAMNKCLFLGELPAWLAETEFGNKSTTEKWMDKLFMSNGFGVGMVSYKEV 208 (260)
Q Consensus 150 ~~ll~~i~~~~a~gs~l~~d~~~~~~~~~~~~~~~~~~w~~~~~~~~Gw~~~~~~~~~~ 208 (260)
..++.....+..||+.+++++.... ... +.+.+..+||..++..-.++
T Consensus 196 ~~i~~~a~~~L~~gG~l~l~~~~~~----------~~~-v~~~l~~~g~~~~~~~~~~~ 243 (251)
T TIGR03704 196 RRVAAGAPDWLAPGGHLLVETSERQ----------APL-AVEAFARAGLIARVASSEEL 243 (251)
T ss_pred HHHHHHHHHhcCCCCEEEEEECcch----------HHH-HHHHHHHCCCCceeeEcccc
Confidence 4677777777788889888864211 111 44667889999876654444
No 54
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=64.71 E-value=23 Score=29.61 Aligned_cols=107 Identities=12% Similarity=0.053 Sum_probs=49.0
Q ss_pred cceEEEeCCCCCCc---ccccCCCCCcEEEEeChHHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCC
Q 024907 55 LKQVVLLTDGMDTR---PYRLNWPTSTIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGN 131 (260)
Q Consensus 55 ~~QVV~LGaGlDTR---~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~ 131 (260)
...|+-||||.=-- +-++. ....++=-|.++++..=+.-++..+.....++.....+-.. +...... ++.
T Consensus 46 ~~~VLELGaG~Gl~gi~~a~~~--~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~-~~~~~~~----~~~ 118 (173)
T PF10294_consen 46 GKRVLELGAGTGLPGIAAAKLF--GAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGD-ELDSDLL----EPH 118 (173)
T ss_dssp TSEEEETT-TTSHHHHHHHHT---T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS--HHHHHH----S-S
T ss_pred CceEEEECCccchhHHHHHhcc--CCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecC-ccccccc----ccc
Confidence 35899999985432 22221 23556667777776654444444321122244444444321 1212222 233
Q ss_pred CCeEEEEccCCCCCHHHHHHHHHHHHhccCCCcEEEEe
Q 024907 132 RPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGE 169 (260)
Q Consensus 132 ~Ptl~i~EGv~Yl~~~~~~~ll~~i~~~~a~gs~l~~d 169 (260)
.+-++|+--|.|. ++....|++.|..+..+++.+++-
T Consensus 119 ~~D~IlasDv~Y~-~~~~~~L~~tl~~ll~~~~~vl~~ 155 (173)
T PF10294_consen 119 SFDVILASDVLYD-EELFEPLVRTLKRLLKPNGKVLLA 155 (173)
T ss_dssp SBSEEEEES--S--GGGHHHHHHHHHHHBTT-TTEEEE
T ss_pred cCCEEEEecccch-HHHHHHHHHHHHHHhCCCCEEEEE
Confidence 4445555555576 466789999999988876654443
No 55
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=64.41 E-value=95 Score=27.82 Aligned_cols=109 Identities=10% Similarity=0.077 Sum_probs=62.6
Q ss_pred CcceEEEeC--CCCCCcccccCCCC--CcEEEEeChHHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCC
Q 024907 54 GLKQVVLLT--DGMDTRPYRLNWPT--STIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFN 129 (260)
Q Consensus 54 g~~QVV~LG--aGlDTR~~Rl~~~~--~~~~~EvD~P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd 129 (260)
+.+.|+-+| .|+.|..+=...|. .+.-+|.| |+..+.-++.++..+.. .+.+++..+.. +....|...|-.
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~-~~~~~~Ar~~~~~ag~~--~~I~~~~G~a~--e~L~~l~~~~~~ 153 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDIN-RENYELGLPVIQKAGVA--HKIDFREGPAL--PVLDQMIEDGKY 153 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCC-HHHHHHHHHHHHHCCCC--CceEEEeccHH--HHHHHHHhcccc
Confidence 456899999 67777544332332 45566666 56677777788876532 36777777653 344555432210
Q ss_pred CCCCeEEEEccCCCCCHHHHHHHHHHHHhccCCCcEEEEeCC
Q 024907 130 GNRPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGELP 171 (260)
Q Consensus 130 ~~~Ptl~i~EGv~Yl~~~~~~~ll~~i~~~~a~gs~l~~d~~ 171 (260)
...==++..-+- +......+..+-.+..+|+.|++|-.
T Consensus 154 ~~~fD~iFiDad----K~~Y~~y~~~~l~ll~~GGviv~DNv 191 (247)
T PLN02589 154 HGTFDFIFVDAD----KDNYINYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_pred CCcccEEEecCC----HHHhHHHHHHHHHhcCCCeEEEEcCC
Confidence 011113333333 33334455555567779999999954
No 56
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=62.93 E-value=35 Score=29.11 Aligned_cols=134 Identities=13% Similarity=0.156 Sum_probs=70.7
Q ss_pred eEEEeCCCCCCccccc--CCCCCcEEEEeCh-HHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCCCC
Q 024907 57 QVVLLTDGMDTRPYRL--NWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRP 133 (260)
Q Consensus 57 QVV~LGaGlDTR~~Rl--~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~~P 133 (260)
.|+-+|||.=.-...+ ..+ +.++.-+|. |+.++.-++.++..+. ..+++++..|+....+ ...||
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl--~~~i~~~~~d~~~~~~-----~~~fD---- 69 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGL--QGRIRIFYRDSAKDPF-----PDTYD---- 69 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCC--CcceEEEecccccCCC-----CCCCC----
Confidence 4889999976655554 223 456666666 4444444444554432 2367788877753222 11244
Q ss_pred eEEEEccCCCCCHHHHHHHHHHHHhccCCCcEEEE-eCChh-hhhhh----cCCCcchhHHHHHHHHhCCcee-eeeCH
Q 024907 134 SVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLG-ELPAW-LAETE----FGNKSTTEKWMDKLFMSNGFGV-GMVSY 205 (260)
Q Consensus 134 tl~i~EGv~Yl~~~~~~~ll~~i~~~~a~gs~l~~-d~~~~-~~~~~----~~~~~~~~~w~~~~~~~~Gw~~-~~~~~ 205 (260)
.++..+.+..+.. ...+|+.+.++..||+.+++ +.... ..... ..+......| .+.+..+||.+ +..+.
T Consensus 70 ~I~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~-~~~l~~~Gf~~~~~~~~ 145 (224)
T smart00828 70 LVFGFEVIHHIKD--KMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEW-AELLARNNLRVVEGVDA 145 (224)
T ss_pred EeehHHHHHhCCC--HHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHH-HHHHHHCCCeEEEeEEC
Confidence 3333333333432 46788899988888887664 33211 10000 0111122333 36788999996 54443
No 57
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=62.67 E-value=15 Score=33.25 Aligned_cols=149 Identities=13% Similarity=0.120 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhhccCCcceEEEeCCCCCCccc-ccCCCCCcEEEEeCh-HHHHHHHHHHHhhcCCCCCCceeEEeccCCC
Q 024907 39 KFIDDKLLRTVNHMDGLKQVVLLTDGMDTRPY-RLNWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLES 116 (260)
Q Consensus 39 r~iDd~l~~~~~~~~g~~QVV~LGaGlDTR~~-Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~ 116 (260)
-.+|++........+...-|+-|||||=+.++ -++.+++++|+=.|. +..+++=.+.+...+ + .......|+-.
T Consensus 90 ~~Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~--~--~~~~~v~Dl~~ 165 (251)
T PF07091_consen 90 PNLDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG--V--PHDARVRDLLS 165 (251)
T ss_dssp GGHHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-----CEEEEEE-TTT
T ss_pred hhHHHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC--C--CcceeEeeeec
Confidence 36777766654432336789999999999754 335556778877666 355677677777764 2 34555555542
Q ss_pred chHHHHHHhcCCCCCCCeEEEEccCCCCCHHHHHHHHHHHHhccCCCcEEEEeCChh-hhhhhcCCCcchhHHHHHHHHh
Q 024907 117 SNIQQALRAKGFNGNRPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGELPAW-LAETEFGNKSTTEKWMDKLFMS 195 (260)
Q Consensus 117 ~dw~~~L~~~Gfd~~~Ptl~i~EGv~Yl~~~~~~~ll~~i~~~~a~gs~l~~d~~~~-~~~~~~~~~~~~~~w~~~~~~~ 195 (260)
+. . ....-...++--++-|..+.-..-++.+.++-+| .++..+|-- +.-...++......|.++++..
T Consensus 166 ~~----~-----~~~~DlaLllK~lp~le~q~~g~g~~ll~~~~~~--~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~ 234 (251)
T PF07091_consen 166 DP----P-----KEPADLALLLKTLPCLERQRRGAGLELLDALRSP--HVVVSFPTRSLGGRNKGMEQTYSAWFEALAAE 234 (251)
T ss_dssp SH----T-----TSEESEEEEET-HHHHHHHSTTHHHHHHHHSCES--EEEEEEES-------TTHHHCHHHHHHHHCCT
T ss_pred cC----C-----CCCcchhhHHHHHHHHHHHhcchHHHHHHHhCCC--eEEEeccccccccCccccccCHHHHHHHhccc
Confidence 11 0 0112233333333334444333445555555222 455555421 1111123333456788899999
Q ss_pred CCceeee
Q 024907 196 NGFGVGM 202 (260)
Q Consensus 196 ~Gw~~~~ 202 (260)
.||.++.
T Consensus 235 ~~~~~~~ 241 (251)
T PF07091_consen 235 RGWIVDR 241 (251)
T ss_dssp TCEEEEE
T ss_pred CCceeee
Confidence 9999853
No 58
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=60.96 E-value=1e+02 Score=27.38 Aligned_cols=106 Identities=8% Similarity=0.022 Sum_probs=58.2
Q ss_pred cceEEEeCCCCCCcccccC--CCCCcEEEEeCh-HHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCC
Q 024907 55 LKQVVLLTDGMDTRPYRLN--WPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGN 131 (260)
Q Consensus 55 ~~QVV~LGaGlDTR~~Rl~--~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~ 131 (260)
...|+-+|||.=.-...+. .+...+++-||. |++++.-++...........+.+++..|+.. +. +.+..||
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~--lp--~~~~sfD-- 147 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATD--LP--FDDCYFD-- 147 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccccc--CC--CCCCCEe--
Confidence 3589999999876555552 122357888888 4555432222221000011257778877652 11 1111122
Q ss_pred CCeEEEEccCCCCCHHHHHHHHHHHHhccCCCcEEE-EeC
Q 024907 132 RPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFL-GEL 170 (260)
Q Consensus 132 ~Ptl~i~EGv~Yl~~~~~~~ll~~i~~~~a~gs~l~-~d~ 170 (260)
.+++..++..++ +...+++.+.+...||+.++ .|+
T Consensus 148 --~V~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 148 --AITMGYGLRNVV--DRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred --EEEEecccccCC--CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 555555554443 23557888888878888754 565
No 59
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=57.08 E-value=51 Score=26.31 Aligned_cols=102 Identities=16% Similarity=0.193 Sum_probs=63.3
Q ss_pred cceEEEeCCCCCCcccccC--CCCCcEEEEeCh-HHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCC
Q 024907 55 LKQVVLLTDGMDTRPYRLN--WPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGN 131 (260)
Q Consensus 55 ~~QVV~LGaGlDTR~~Rl~--~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~ 131 (260)
...|+-||||.=.-.+.+. ...+.+++=||. |++++.-++.++..+. + +++++..|+.. +...+ . .
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~--~-ni~~~~~d~~~--l~~~~-----~-~ 72 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL--D-NIEFIQGDIED--LPQEL-----E-E 72 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS--T-TEEEEESBTTC--GCGCS-----S-T
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc--c-ccceEEeehhc--ccccc-----C-C
Confidence 3589999999777666663 223577888888 5666665555555532 2 79999998863 32111 1 2
Q ss_pred CCeEEEEccCC-CCCHHHHHHHHHHHHhccCCCcEEEEe
Q 024907 132 RPSVWAIQGLP-VMTLASFEDVLLLVGSLAMNKCLFLGE 169 (260)
Q Consensus 132 ~Ptl~i~EGv~-Yl~~~~~~~ll~~i~~~~a~gs~l~~d 169 (260)
.--++++-+++ ++... ..+++.+.++..+++.+++.
T Consensus 73 ~~D~I~~~~~l~~~~~~--~~~l~~~~~~lk~~G~~i~~ 109 (152)
T PF13847_consen 73 KFDIIISNGVLHHFPDP--EKVLKNIIRLLKPGGILIIS 109 (152)
T ss_dssp TEEEEEEESTGGGTSHH--HHHHHHHHHHEEEEEEEEEE
T ss_pred CeeEEEEcCchhhccCH--HHHHHHHHHHcCCCcEEEEE
Confidence 33467777774 45433 45677777777677666544
No 60
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=55.11 E-value=1.3e+02 Score=25.57 Aligned_cols=101 Identities=13% Similarity=0.095 Sum_probs=57.5
Q ss_pred ceEEEeCCCCCCcccccC--CCCCcEEEEeCh-HHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCCC
Q 024907 56 KQVVLLTDGMDTRPYRLN--WPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNR 132 (260)
Q Consensus 56 ~QVV~LGaGlDTR~~Rl~--~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~~ 132 (260)
..|+-+|||.=.-...+. .+.+..++-+|. |++++.-++.++..+ ..++.++..|..... +....||
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~----~~~~~fD--- 116 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG---LHNVELVHGNAMELP----FDDNSFD--- 116 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC---CCceEEEEechhcCC----CCCCCcc---
Confidence 579999999776555552 223456666776 566665555554432 135777777764211 1112233
Q ss_pred CeEEEEccCCCCCHHHHHHHHHHHHhccCCCcEEE-Ee
Q 024907 133 PSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFL-GE 169 (260)
Q Consensus 133 Ptl~i~EGv~Yl~~~~~~~ll~~i~~~~a~gs~l~-~d 169 (260)
.+++..++-+++. ...+++.+.+...||+.++ .+
T Consensus 117 -~V~~~~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 117 -YVTIGFGLRNVPD--YMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred -EEEEecccccCCC--HHHHHHHHHHHcCcCeEEEEEE
Confidence 4555444445432 2467777777777888765 44
No 61
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=54.90 E-value=1.6e+02 Score=26.38 Aligned_cols=106 Identities=17% Similarity=0.094 Sum_probs=64.1
Q ss_pred CcceEEEeCCCCCCcccccCCCCCcEEEEeChHHH-HHHHHHHHhhcCCCCCCcee-EEeccCCCchHHHHHHhcCCCCC
Q 024907 54 GLKQVVLLTDGMDTRPYRLNWPTSTIIFDISPERI-FKISAEKLEGVGAKIPRSCL-FLHVPLESSNIQQALRAKGFNGN 131 (260)
Q Consensus 54 g~~QVV~LGaGlDTR~~Rl~~~~~~~~~EvD~P~v-~~~K~~~l~~~~~~~p~~~~-~v~vd~~~~dw~~~L~~~Gfd~~ 131 (260)
+..-|+-+|||-=+-+==.+|.++.++.-||..+- .++-.+..++. + |..+. ++..+.+ ++. .|.+. +
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~--k-~~~~~~fvva~ge--~l~-~l~d~----s 145 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEK--K-PLQVERFVVADGE--NLP-QLADG----S 145 (252)
T ss_pred CccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhc--c-CcceEEEEeechh--cCc-ccccC----C
Confidence 45567999999988655556666889999998543 33333333332 2 33555 6666654 322 33333 3
Q ss_pred CCeEEEEccCCCCCHHHHHHHHHHHHhccCCCcEEE-EeCC
Q 024907 132 RPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFL-GELP 171 (260)
Q Consensus 132 ~Ptl~i~EGv~Yl~~~~~~~ll~~i~~~~a~gs~l~-~d~~ 171 (260)
--|++-+-|+ -+-++..+.|+.+.++..||++++ .++.
T Consensus 146 ~DtVV~TlvL--CSve~~~k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 146 YDTVVCTLVL--CSVEDPVKQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred eeeEEEEEEE--eccCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 3355555444 234445667888898888988766 4554
No 62
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=54.43 E-value=1e+02 Score=26.00 Aligned_cols=121 Identities=8% Similarity=-0.005 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHhhccCCcceEEEeCCCCCCcccccCCCCCcEEEEeChH-HHHHHHHHHHhhcCCCCCCceeEEec
Q 024907 34 YCLTTKFIDDKLLRTVNHMDGLKQVVLLTDGMDTRPYRLNWPTSTIIFDISPE-RIFKISAEKLEGVGAKIPRSCLFLHV 112 (260)
Q Consensus 34 ~~~Rtr~iDd~l~~~~~~~~g~~QVV~LGaGlDTR~~Rl~~~~~~~~~EvD~P-~v~~~K~~~l~~~~~~~p~~~~~v~v 112 (260)
-.+|..++.+.+... ..+.....|+.+|||--+-...+... +..+.-+|.. .+++..++.+...+. .+.+++..
T Consensus 26 ~~~~~~~i~~~~~~~-~~~~~~~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~---~~~~~~~~ 100 (224)
T TIGR01983 26 NPLRLDYIRDTIRKN-KKPLFGLRVLDVGCGGGLLSEPLARL-GANVTGIDASEENIEVAKLHAKKDPL---LKIEYRCT 100 (224)
T ss_pred hHHHHHHHHHHHHhc-ccCCCCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHcCC---CceEEEeC
Confidence 345667777777643 11112347999999976655544222 2345566653 444444444444321 13555555
Q ss_pred cCCCchHHHHHHhcCCCCCCCeEEEEccC-CCCCHHHHHHHHHHHHhccCCCcEEEEe
Q 024907 113 PLESSNIQQALRAKGFNGNRPSVWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFLGE 169 (260)
Q Consensus 113 d~~~~dw~~~L~~~Gfd~~~Ptl~i~EGv-~Yl~~~~~~~ll~~i~~~~a~gs~l~~d 169 (260)
|+. ++.. . .++.--++++-.+ .+.. ....+++.+.+...+|+.+++.
T Consensus 101 d~~--~~~~---~---~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~i~ 148 (224)
T TIGR01983 101 SVE--DLAE---K---GAKSFDVVTCMEVLEHVP--DPQAFIRACAQLLKPGGILFFS 148 (224)
T ss_pred CHH--Hhhc---C---CCCCccEEEehhHHHhCC--CHHHHHHHHHHhcCCCcEEEEE
Confidence 443 2211 1 0122334544444 3443 2346778888777787776654
No 63
>PRK00536 speE spermidine synthase; Provisional
Probab=54.32 E-value=1.6e+02 Score=26.70 Aligned_cols=105 Identities=12% Similarity=0.122 Sum_probs=63.2
Q ss_pred cCCcceEEEeCCCCCCcccc-c-CCCCCcEEEEeChHHHHHHHHHHHhhcCC--C-------------CCCceeEEecc-
Q 024907 52 MDGLKQVVLLTDGMDTRPYR-L-NWPTSTIIFDISPERIFKISAEKLEGVGA--K-------------IPRSCLFLHVP- 113 (260)
Q Consensus 52 ~~g~~QVV~LGaGlDTR~~R-l-~~~~~~~~~EvD~P~v~~~K~~~l~~~~~--~-------------~p~~~~~v~vd- 113 (260)
|+..+.|.++|+| |--.-| + .++..++.+|+|- +|++.-++.++.... . ....+..|-+|
T Consensus 70 h~~pk~VLIiGGG-DGg~~REvLkh~~~v~mVeID~-~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~~~~fDVIIvDs 147 (262)
T PRK00536 70 KKELKEVLIVDGF-DLELAHQLFKYDTHVDFVQADE-KILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIICLQ 147 (262)
T ss_pred CCCCCeEEEEcCC-chHHHHHHHCcCCeeEEEECCH-HHHHHHHHHCHHHHHhhcCCCEEEeehhhhccCCcCCEEEEcC
Confidence 4567889999887 554444 2 5566899999997 566666665544211 0 11346666777
Q ss_pred CCCchHHHHHHhcCCCCCCCeEEEEccC-CCCCHHHHHHHHHHHHhccC
Q 024907 114 LESSNIQQALRAKGFNGNRPSVWAIQGL-PVMTLASFEDVLLLVGSLAM 161 (260)
Q Consensus 114 ~~~~dw~~~L~~~Gfd~~~Ptl~i~EGv-~Yl~~~~~~~ll~~i~~~~a 161 (260)
+...+.-+.+.++ +.+ --++++++= +|+.++....+.+.+.+.|+
T Consensus 148 ~~~~~fy~~~~~~-L~~--~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~ 193 (262)
T PRK00536 148 EPDIHKIDGLKRM-LKE--DGVFISVAKHPLLEHVSMQNALKNMGDFFS 193 (262)
T ss_pred CCChHHHHHHHHh-cCC--CcEEEECCCCcccCHHHHHHHHHHHHhhCC
Confidence 3333333333322 111 135666655 67788888888888888763
No 64
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=53.92 E-value=47 Score=23.33 Aligned_cols=91 Identities=12% Similarity=0.035 Sum_probs=47.4
Q ss_pred EeCCCCCCccccc-CCCCCcEEEEeChHHH-HHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCCCCeEEE
Q 024907 60 LLTDGMDTRPYRL-NWPTSTIIFDISPERI-FKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPSVWA 137 (260)
Q Consensus 60 ~LGaGlDTR~~Rl-~~~~~~~~~EvD~P~v-~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~~Ptl~i 137 (260)
-+|||.=.-...| +. ++..++=+|.-+. ++.=++.+.. .+..++..|+.. + .|..+.=-+++
T Consensus 2 diG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~------~~~~~~~~d~~~--l-------~~~~~sfD~v~ 65 (95)
T PF08241_consen 2 DIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKN------EGVSFRQGDAED--L-------PFPDNSFDVVF 65 (95)
T ss_dssp EET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTT------STEEEEESBTTS--S-------SS-TT-EEEEE
T ss_pred EecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccc------cCchheeehHHh--C-------ccccccccccc
Confidence 4677643333333 23 2455666665433 2222222222 244577777652 2 12222334566
Q ss_pred EccC-CCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024907 138 IQGL-PVMTLASFEDVLLLVGSLAMNKCLFLG 168 (260)
Q Consensus 138 ~EGv-~Yl~~~~~~~ll~~i~~~~a~gs~l~~ 168 (260)
+-++ .|+ ++...+++.+.+...||+.+++
T Consensus 66 ~~~~~~~~--~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 66 SNSVLHHL--EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp EESHGGGS--SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccceeec--cCHHHHHHHHHHHcCcCeEEeC
Confidence 6666 567 6678889999998888888764
No 65
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=53.39 E-value=1.9e+02 Score=26.83 Aligned_cols=132 Identities=14% Similarity=0.090 Sum_probs=70.5
Q ss_pred ceEEEeCCCCCCcccccCCCCCcEEEEeChH-HHHHHHHHHHhhcCCC--CCCceeEEeccCCCchHHHHHHhcCCCCCC
Q 024907 56 KQVVLLTDGMDTRPYRLNWPTSTIIFDISPE-RIFKISAEKLEGVGAK--IPRSCLFLHVPLESSNIQQALRAKGFNGNR 132 (260)
Q Consensus 56 ~QVV~LGaGlDTR~~Rl~~~~~~~~~EvD~P-~v~~~K~~~l~~~~~~--~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~~ 132 (260)
..|+-+|||.=.-...+... +..++-+|.. ++++.-++..+..... ...+..+...|+. ++ ...||
T Consensus 146 ~~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~--~l-----~~~fD--- 214 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALE-GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE--SL-----SGKYD--- 214 (315)
T ss_pred CEEEEecCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh--hc-----CCCcC---
Confidence 58999999987655555332 4678888884 4555444444432110 0113556666653 11 12344
Q ss_pred CeEEEEccC-CCCCHHHHHHHHHHHHhccCCCcEEEEeCCh-hhh----hhh---cCCC------cchhHHHHHHHHhCC
Q 024907 133 PSVWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFLGELPA-WLA----ETE---FGNK------STTEKWMDKLFMSNG 197 (260)
Q Consensus 133 Ptl~i~EGv-~Yl~~~~~~~ll~~i~~~~a~gs~l~~d~~~-~~~----~~~---~~~~------~~~~~w~~~~~~~~G 197 (260)
++++-.+ .+++.+....+++.+..+. +|..++...+. +.. ... .+.. ..+...+.++|..+|
T Consensus 215 --~Vv~~~vL~H~p~~~~~~ll~~l~~l~-~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AG 291 (315)
T PLN02585 215 --TVTCLDVLIHYPQDKADGMIAHLASLA-EKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAG 291 (315)
T ss_pred --EEEEcCEEEecCHHHHHHHHHHHHhhc-CCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCC
Confidence 4444444 5677777778889888765 44444322222 111 110 0100 012334568889999
Q ss_pred ceee
Q 024907 198 FGVG 201 (260)
Q Consensus 198 w~~~ 201 (260)
|++.
T Consensus 292 f~v~ 295 (315)
T PLN02585 292 WKVA 295 (315)
T ss_pred CEEE
Confidence 9973
No 66
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=52.90 E-value=1.5e+02 Score=25.62 Aligned_cols=101 Identities=8% Similarity=-0.111 Sum_probs=60.1
Q ss_pred ceEEEeCCCCCCcccccCCCCCcEEEEeChHHH-HHHHHHHHhhcCCC------------CCCceeEEeccCCCchHHHH
Q 024907 56 KQVVLLTDGMDTRPYRLNWPTSTIIFDISPERI-FKISAEKLEGVGAK------------IPRSCLFLHVPLESSNIQQA 122 (260)
Q Consensus 56 ~QVV~LGaGlDTR~~Rl~~~~~~~~~EvD~P~v-~~~K~~~l~~~~~~------------~p~~~~~v~vd~~~~dw~~~ 122 (260)
..|+.+|||.-.-+--|.. .|..|.=||.-++ ++ +. .++.+.. ...+++++..|+..-+. .
T Consensus 36 ~rvLd~GCG~G~da~~LA~-~G~~V~gvD~S~~Ai~-~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~--~ 109 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAE-QGHRVLGVELSEIAVE-QF--FAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA--A 109 (213)
T ss_pred CeEEEeCCCchhHHHHHHh-CCCeEEEEeCCHHHHH-HH--HHHcCCCcceeccccceeeecCceEEEEccCCCCCc--c
Confidence 5899999998765655643 3688999998544 33 21 1111110 01246677777753111 1
Q ss_pred HHhcCCCCCCCeEEEEccC-CCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024907 123 LRAKGFNGNRPSVWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFLG 168 (260)
Q Consensus 123 L~~~Gfd~~~Ptl~i~EGv-~Yl~~~~~~~ll~~i~~~~a~gs~l~~ 168 (260)
.. ..-.+++--++ +-++++.-...++.|.++..||+.+.+
T Consensus 110 ~~------~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 110 DL------GPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred cC------CCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 00 11123333344 568888888899999999999986443
No 67
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=51.63 E-value=64 Score=28.11 Aligned_cols=96 Identities=9% Similarity=-0.040 Sum_probs=53.1
Q ss_pred cceEEEeCCCCCCcccccCCCCCcEEEEeCh-HHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCCCC
Q 024907 55 LKQVVLLTDGMDTRPYRLNWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRP 133 (260)
Q Consensus 55 ~~QVV~LGaGlDTR~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~~P 133 (260)
...|+-+|||-=.-...+... +..++-+|. |++++.-++... ...++..|+.. +. +....|
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~-~~~v~~~D~s~~~l~~a~~~~~--------~~~~~~~d~~~--~~--~~~~~f----- 104 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPMLAQARQKDA--------ADHYLAGDIES--LP--LATATF----- 104 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCC--------CCCEEEcCccc--Cc--CCCCcE-----
Confidence 457999999975433333222 467888888 555554322211 23567777652 11 111112
Q ss_pred eEEEEccC-CCCCHHHHHHHHHHHHhccCCCcEEEEeC
Q 024907 134 SVWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFLGEL 170 (260)
Q Consensus 134 tl~i~EGv-~Yl~~~~~~~ll~~i~~~~a~gs~l~~d~ 170 (260)
-++++-.. .+.. +...+|+.+.+...||+.+++-.
T Consensus 105 D~V~s~~~l~~~~--d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 105 DLAWSNLAVQWCG--NLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred EEEEECchhhhcC--CHHHHHHHHHHHcCCCeEEEEEe
Confidence 23333333 3433 34667888888888988887653
No 68
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=48.08 E-value=88 Score=27.13 Aligned_cols=108 Identities=11% Similarity=0.048 Sum_probs=59.3
Q ss_pred CcceEEEeCCC--CCCcccccCCCCC--cEEEEeChHHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCC
Q 024907 54 GLKQVVLLTDG--MDTRPYRLNWPTS--TIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFN 129 (260)
Q Consensus 54 g~~QVV~LGaG--lDTR~~Rl~~~~~--~~~~EvD~P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd 129 (260)
+.+.|+-+|+| +.|-.+-...|.+ +.-+|+|. +..+.-++.++..+.. ++.+++..|.. +....|...+=
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~-~~~~~A~~~~~~ag~~--~~I~~~~gda~--~~l~~l~~~~~- 118 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDP-ERAEIARENFRKAGLD--DRIEVIEGDAL--EVLPELANDGE- 118 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSH-HHHHHHHHHHHHTTGG--GGEEEEES-HH--HHHHHHHHTTT-
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcH-HHHHHHHHHHHhcCCC--CcEEEEEeccH--hhHHHHHhccC-
Confidence 45789999864 5554333233433 44455554 4556666677766532 36777776653 45566654320
Q ss_pred CCCCeEEEEccCCCCCHHHHHHHHHHHHhccCCCcEEEEeCC
Q 024907 130 GNRPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGELP 171 (260)
Q Consensus 130 ~~~Ptl~i~EGv~Yl~~~~~~~ll~~i~~~~a~gs~l~~d~~ 171 (260)
.+.==++..-+- +.+....+..+-.+..+|+.|++|-.
T Consensus 119 ~~~fD~VFiDa~----K~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 119 EGQFDFVFIDAD----KRNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp TTSEEEEEEEST----GGGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred CCceeEEEEccc----ccchhhHHHHHhhhccCCeEEEEccc
Confidence 011124444443 33444555556667779999999954
No 69
>PRK04457 spermidine synthase; Provisional
Probab=47.79 E-value=1.9e+02 Score=25.83 Aligned_cols=106 Identities=9% Similarity=0.089 Sum_probs=56.2
Q ss_pred CcceEEEeCCCCCCcc--cccCCCC-CcEEEEeChHHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCC
Q 024907 54 GLKQVVLLTDGMDTRP--YRLNWPT-STIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNG 130 (260)
Q Consensus 54 g~~QVV~LGaGlDTR~--~Rl~~~~-~~~~~EvD~P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~ 130 (260)
..+.|+.||+|-=+-+ +.-..|. .++.+|+|.. +++.-++.+...+. ..+++++..|.. ++.+.. +
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~-vi~~A~~~f~~~~~--~~rv~v~~~Da~--~~l~~~------~ 134 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQ-VIAVARNHFELPEN--GERFEVIEADGA--EYIAVH------R 134 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHH-HHHHHHHHcCCCCC--CCceEEEECCHH--HHHHhC------C
Confidence 3467999998866533 3223442 4566666654 55543344332111 125677766643 333322 1
Q ss_pred CCCeEEEEccC-C-CCCHH-HHHHHHHHHHhccCCCcEEEEeC
Q 024907 131 NRPSVWAIQGL-P-VMTLA-SFEDVLLLVGSLAMNKCLFLGEL 170 (260)
Q Consensus 131 ~~Ptl~i~EGv-~-Yl~~~-~~~~ll~~i~~~~a~gs~l~~d~ 170 (260)
..--++++-+. . +.++. ....+++.+.+...||+.+++..
T Consensus 135 ~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 135 HSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred CCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 22235554432 1 22211 13567788888778899988874
No 70
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=47.15 E-value=1.7e+02 Score=24.52 Aligned_cols=96 Identities=10% Similarity=0.061 Sum_probs=54.3
Q ss_pred ceEEEeCCCCCCccccc--CCCCCcEEEEeChH-HHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCCC
Q 024907 56 KQVVLLTDGMDTRPYRL--NWPTSTIIFDISPE-RIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNR 132 (260)
Q Consensus 56 ~QVV~LGaGlDTR~~Rl--~~~~~~~~~EvD~P-~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~~ 132 (260)
..|+-+|||--.-...+ ..+ ..+++-+|.. +.++.-++.+. .++.++..|+.... +....
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~-------~~~~~~~~d~~~~~---------~~~~~ 98 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLS-------ENVQFICGDAEKLP---------LEDSS 98 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcC-------CCCeEEecchhhCC---------CCCCc
Confidence 47999999987643333 223 3445556653 33332222221 25667777765211 12233
Q ss_pred CeEEEEccC-CCCCHHHHHHHHHHHHhccCCCcEEEEeC
Q 024907 133 PSVWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFLGEL 170 (260)
Q Consensus 133 Ptl~i~EGv-~Yl~~~~~~~ll~~i~~~~a~gs~l~~d~ 170 (260)
.-++++-.+ .++. +...+++.+.+...||+.+++..
T Consensus 99 fD~vi~~~~l~~~~--~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 99 FDLIVSNLALQWCD--DLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred eeEEEEhhhhhhcc--CHHHHHHHHHHHcCCCcEEEEEe
Confidence 456666666 4553 24567888888888888877654
No 71
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=45.11 E-value=2.3e+02 Score=25.34 Aligned_cols=38 Identities=3% Similarity=-0.149 Sum_probs=31.5
Q ss_pred CeEEEEccC-CCCCHHHHHHHHHHHHhccCCCcEEEEeC
Q 024907 133 PSVWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFLGEL 170 (260)
Q Consensus 133 Ptl~i~EGv-~Yl~~~~~~~ll~~i~~~~a~gs~l~~d~ 170 (260)
--++++-.| .|++.+...++++.+.+...||+.+++-.
T Consensus 204 fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 204 FDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred CCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 347777777 69998888999999999999999888754
No 72
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=40.70 E-value=2.9e+02 Score=25.32 Aligned_cols=117 Identities=12% Similarity=0.158 Sum_probs=62.7
Q ss_pred HHHHHHHHHhhccCCcceEEEeCCCCCCccccc--CCCCCcEEEEeCh-HHHHHHHHHHHhhcCCCCCCceeEEeccCCC
Q 024907 40 FIDDKLLRTVNHMDGLKQVVLLTDGMDTRPYRL--NWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLES 116 (260)
Q Consensus 40 ~iDd~l~~~~~~~~g~~QVV~LGaGlDTR~~Rl--~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~ 116 (260)
.++..+.+.+.. .+...|+-+|||.=.-+..+ ..| +.+++-+|. |..++.-++.++..+. ..+++++..|+..
T Consensus 120 lv~~~l~~~~~~-~~~~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l--~~~i~~~~~D~~~ 195 (307)
T PRK11805 120 LIEDGFAPWLED-PPVTRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGL--EDRVTLIESDLFA 195 (307)
T ss_pred HHHHHHHHHhcc-CCCCEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCC--CCcEEEEECchhh
Confidence 344444444332 12257999999987765555 233 455666666 5555544444444332 1256777776531
Q ss_pred chHHHHHHhcCCCCCCCeEEEEccCCCCCH-------------------------HHHHHHHHHHHhccCCCcEEEEeCC
Q 024907 117 SNIQQALRAKGFNGNRPSVWAIQGLPVMTL-------------------------ASFEDVLLLVGSLAMNKCLFLGELP 171 (260)
Q Consensus 117 ~dw~~~L~~~Gfd~~~Ptl~i~EGv~Yl~~-------------------------~~~~~ll~~i~~~~a~gs~l~~d~~ 171 (260)
.+.. ...-++++- -+|.+. +-...+++.+.+...||+.++++..
T Consensus 196 -----~l~~-----~~fDlIvsN-PPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 196 -----ALPG-----RRYDLIVSN-PPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred -----hCCC-----CCccEEEEC-CCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1111 112233321 012211 2346778888888889999999864
No 73
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=40.69 E-value=3e+02 Score=25.39 Aligned_cols=111 Identities=10% Similarity=0.097 Sum_probs=72.8
Q ss_pred HHHHHHHHhhccCCcceEEEeCCCCCCcccccCCCCCcEEEEeChHH-HHHHHHHHHhhcCCCCCCceeEEeccCCCchH
Q 024907 41 IDDKLLRTVNHMDGLKQVVLLTDGMDTRPYRLNWPTSTIIFDISPER-IFKISAEKLEGVGAKIPRSCLFLHVPLESSNI 119 (260)
Q Consensus 41 iDd~l~~~~~~~~g~~QVV~LGaGlDTR~~Rl~~~~~~~~~EvD~P~-v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw 119 (260)
+|..+.++--+ +| ..|.-+|||-=....+...--+++++-|++.+ ..+.-++.+++.+-. .+.+.+..|.. +.
T Consensus 61 ~~~~~~kl~L~-~G-~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~--~~v~v~l~d~r--d~ 134 (283)
T COG2230 61 LDLILEKLGLK-PG-MTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLE--DNVEVRLQDYR--DF 134 (283)
T ss_pred HHHHHHhcCCC-CC-CEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCC--cccEEEecccc--cc
Confidence 56666554221 44 57999999988887777422268999999964 444445556665532 35556555544 12
Q ss_pred HHHHHhcCCCCCCCeEEEEccC-CCCCHHHHHHHHHHHHhccCCCcEEE
Q 024907 120 QQALRAKGFNGNRPSVWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFL 167 (260)
Q Consensus 120 ~~~L~~~Gfd~~~Ptl~i~EGv-~Yl~~~~~~~ll~~i~~~~a~gs~l~ 167 (260)
.+. || - |++=|. -|+..+.....|+.+.+...||+.++
T Consensus 135 ~e~-----fD----r-IvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~l 173 (283)
T COG2230 135 EEP-----FD----R-IVSVGMFEHVGKENYDDFFKKVYALLKPGGRML 173 (283)
T ss_pred ccc-----cc----e-eeehhhHHHhCcccHHHHHHHHHhhcCCCceEE
Confidence 111 44 2 445555 58999989999999999999888755
No 74
>COG3747 Phage terminase, small subunit [DNA replication, recombination, and repair]
Probab=40.56 E-value=9 Score=31.93 Aligned_cols=63 Identities=17% Similarity=0.193 Sum_probs=37.6
Q ss_pred HHHHhCCceeeeeCHHHHHHHcCCCC----CCccchhHHHHHHHhcCChHHHHHHHHHHHHhhhhcCccCcc
Q 024907 191 KLFMSNGFGVGMVSYKEVASSLGKEL----APGYYKNILFLAEQLRFSDDQMDTWRRELQRVEEEGDEEGFE 258 (260)
Q Consensus 191 ~~~~~~Gw~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (260)
+.+..|||.......++ ..+-+ .+.+...++-++..+|++..-+-.-..... ++.|.|+|+|-
T Consensus 88 ~~lkk~G~ii~~~~~g~----~krNPav~~~sdA~~~l~klaSeLGltP~arakLa~~~~-~~~e~d~d~~~ 154 (160)
T COG3747 88 AHLKKHGFIITNQFSGR----VKRNPAVQAASDAIRNLLKLASELGLTPSARAKLAALNM-APGEEDDDEFN 154 (160)
T ss_pred HHHHHcceeeeccccce----ecCChHHHHHHHHHHHHHHHHHHhCCChHHHHhhhhhhc-CCCCccccccC
Confidence 45688899864221110 11111 112678889999999999876655554444 45555777763
No 75
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=40.23 E-value=2.9e+02 Score=26.02 Aligned_cols=131 Identities=12% Similarity=0.044 Sum_probs=68.7
Q ss_pred ceEEEeCCCCCCccccc--CCCCCcEEEEeCh-HHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCCC
Q 024907 56 KQVVLLTDGMDTRPYRL--NWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNR 132 (260)
Q Consensus 56 ~QVV~LGaGlDTR~~Rl--~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~~ 132 (260)
..|+-||||.=.-...+ ..+ +.+++=+|. |++++.-++.... .+++++..|+.. + ++..+.
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~------~~i~~i~gD~e~------l---p~~~~s 178 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL------KECKIIEGDAED------L---PFPTDY 178 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhc------cCCeEEeccHHh------C---CCCCCc
Confidence 47999999985543333 223 345667776 4544433332211 245565555431 1 222223
Q ss_pred CeEEEEccC-CCCCHHHHHHHHHHHHhccCCCcEEEE-eC--Ch-hhhhhhc--CCCcchhHHHHHHHHhCCcee-eeeC
Q 024907 133 PSVWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFLG-EL--PA-WLAETEF--GNKSTTEKWMDKLFMSNGFGV-GMVS 204 (260)
Q Consensus 133 Ptl~i~EGv-~Yl~~~~~~~ll~~i~~~~a~gs~l~~-d~--~~-~~~~~~~--~~~~~~~~w~~~~~~~~Gw~~-~~~~ 204 (260)
--++++-++ .|++.. ..+|+.+.+...||+.+++ +. +. |..+... ...........++|.+.||.. +..+
T Consensus 179 FDvVIs~~~L~~~~d~--~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 179 ADRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred eeEEEEcChhhhCCCH--HHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEE
Confidence 345666666 466533 4578888888888887654 32 21 2222110 011112233457889999984 5443
No 76
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=39.95 E-value=51 Score=31.88 Aligned_cols=59 Identities=17% Similarity=0.463 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhhccCCcceEEEeCCCCCCccccc--CCCC--CcEEEEeChHHHHHHHH--HHHhhc
Q 024907 39 KFIDDKLLRTVNHMDGLKQVVLLTDGMDTRPYRL--NWPT--STIIFDISPERIFKISA--EKLEGV 99 (260)
Q Consensus 39 r~iDd~l~~~~~~~~g~~QVV~LGaGlDTR~~Rl--~~~~--~~~~~EvD~P~v~~~K~--~~l~~~ 99 (260)
||-+..+--.++..+|.+-|.+||+| |--+.|= ..|. +++-+|+| |.|+++-+ .+++..
T Consensus 274 RYhEsLV~pals~~~~a~~vLvlGGG-DGLAlRellkyP~~~qI~lVdLD-P~miela~~~~vlr~~ 338 (508)
T COG4262 274 RYHESLVYPALSSVRGARSVLVLGGG-DGLALRELLKYPQVEQITLVDLD-PRMIELASHATVLRAL 338 (508)
T ss_pred hhhheeeecccccccccceEEEEcCC-chHHHHHHHhCCCcceEEEEecC-HHHHHHhhhhhHhhhh
Confidence 45555554444433678899999987 7777663 5563 56666666 67776644 666654
No 77
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=39.90 E-value=1.3e+02 Score=25.32 Aligned_cols=106 Identities=10% Similarity=0.016 Sum_probs=58.6
Q ss_pred cceEEEeCCCCCCccccc--CCCCCcEEEEeCh-HHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCC-
Q 024907 55 LKQVVLLTDGMDTRPYRL--NWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNG- 130 (260)
Q Consensus 55 ~~QVV~LGaGlDTR~~Rl--~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~- 130 (260)
...|+-+|||-=.-...+ ..| +..++-||. +++++.-.+.+...+. .+++++..|+. +....+ ++.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l---~ni~~i~~d~~--~~~~~~----~~~~ 86 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGL---KNLHVLCGDAN--ELLDKF----FPDG 86 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCC---CCEEEEccCHH--HHHHhh----CCCC
Confidence 347999999987765555 345 456777777 4444443334444331 26888888774 222222 121
Q ss_pred CCCeEEEEccCCCCCHHH------HHHHHHHHHhccCCCcEEEEeC
Q 024907 131 NRPSVWAIQGLPVMTLAS------FEDVLLLVGSLAMNKCLFLGEL 170 (260)
Q Consensus 131 ~~Ptl~i~EGv~Yl~~~~------~~~ll~~i~~~~a~gs~l~~d~ 170 (260)
+.-.+++-=..++..... ...+++.+.+...||+.+.+-.
T Consensus 87 ~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 87 SLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred ceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 122333322224433211 1467888888888998877653
No 78
>PHA03411 putative methyltransferase; Provisional
Probab=39.18 E-value=16 Score=33.58 Aligned_cols=30 Identities=27% Similarity=0.385 Sum_probs=24.3
Q ss_pred eEEEeCCCCCCcccccCCCC---CcEEEEeChH
Q 024907 57 QVVLLTDGMDTRPYRLNWPT---STIIFDISPE 86 (260)
Q Consensus 57 QVV~LGaGlDTR~~Rl~~~~---~~~~~EvD~P 86 (260)
=+.--|||.||-.||=+|.+ -+.+++||+-
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (279)
T PHA03411 207 LVTYAGCGIDTSIYRDEWHSTNVLTEVVEVRYY 239 (279)
T ss_pred cEecCCCCcccceehhhccCCCccceEEEEEec
Confidence 37788999999999998863 3568888885
No 79
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=38.49 E-value=75 Score=24.89 Aligned_cols=104 Identities=12% Similarity=0.105 Sum_probs=56.6
Q ss_pred HHHHHHHHhhccCCcceEEEeCCCCCC--cccccCCCCCcEEEEeChH-HHHHHHHHHHhhcCCCCCCceeEEeccCCCc
Q 024907 41 IDDKLLRTVNHMDGLKQVVLLTDGMDT--RPYRLNWPTSTIIFDISPE-RIFKISAEKLEGVGAKIPRSCLFLHVPLESS 117 (260)
Q Consensus 41 iDd~l~~~~~~~~g~~QVV~LGaGlDT--R~~Rl~~~~~~~~~EvD~P-~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~ 117 (260)
+-+.+.+..........|+-+|||.=. +.++ +. +.+++=+|.- .+++. . +......+..
T Consensus 9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~-~~--~~~~~g~D~~~~~~~~------~-------~~~~~~~~~~-- 70 (161)
T PF13489_consen 9 YADLLERLLPRLKPGKRVLDIGCGTGSFLRALA-KR--GFEVTGVDISPQMIEK------R-------NVVFDNFDAQ-- 70 (161)
T ss_dssp HHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHH-HT--TSEEEEEESSHHHHHH------T-------TSEEEEEECH--
T ss_pred HHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHH-Hh--CCEEEEEECCHHHHhh------h-------hhhhhhhhhh--
Confidence 445555555311334689999999743 3332 22 3356666663 33332 0 1111111111
Q ss_pred hHHHHHHhcCCCCCCCeEEEEccC-CCCCHHHHHHHHHHHHhccCCCcEEEEeCC
Q 024907 118 NIQQALRAKGFNGNRPSVWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFLGELP 171 (260)
Q Consensus 118 dw~~~L~~~Gfd~~~Ptl~i~EGv-~Yl~~~~~~~ll~~i~~~~a~gs~l~~d~~ 171 (260)
++ ... .+.--++++-.+ -|++ ....+|+.|.++..||+.+++..+
T Consensus 71 ~~--~~~-----~~~fD~i~~~~~l~~~~--d~~~~l~~l~~~LkpgG~l~~~~~ 116 (161)
T PF13489_consen 71 DP--PFP-----DGSFDLIICNDVLEHLP--DPEEFLKELSRLLKPGGYLVISDP 116 (161)
T ss_dssp TH--HCH-----SSSEEEEEEESSGGGSS--HHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred hh--hcc-----ccchhhHhhHHHHhhcc--cHHHHHHHHHHhcCCCCEEEEEEc
Confidence 11 111 223345666666 4777 367899999999999998887754
No 80
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=38.11 E-value=2.2e+02 Score=23.27 Aligned_cols=120 Identities=13% Similarity=0.011 Sum_probs=65.1
Q ss_pred ceEEEeCCCCCCcccccCCCCCcEEEEeCh-HHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCCCCe
Q 024907 56 KQVVLLTDGMDTRPYRLNWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPS 134 (260)
Q Consensus 56 ~QVV~LGaGlDTR~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~~Pt 134 (260)
..|+-||||.=.-...+..... +++-+|. |+.++.-++.+...+ .+.+++..|+.. .+ . +..-
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~-----~~-----~-~~fD 84 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNN----VGLDVVMTDLFK-----GV-----R-GKFD 84 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcC----CceEEEEccccc-----cc-----C-Cccc
Confidence 4699999998876666643222 6777776 566554444444332 135556555431 11 0 1222
Q ss_pred EEEEccCCCCCH---------------------HHHHHHHHHHHhccCCCcEEEEeCChhhhhhhcCCCcchhHHHHHHH
Q 024907 135 VWAIQGLPVMTL---------------------ASFEDVLLLVGSLAMNKCLFLGELPAWLAETEFGNKSTTEKWMDKLF 193 (260)
Q Consensus 135 l~i~EGv~Yl~~---------------------~~~~~ll~~i~~~~a~gs~l~~d~~~~~~~~~~~~~~~~~~w~~~~~ 193 (260)
++++- .+|.+. +....+++.+.++..||+.+++-.... .......+++
T Consensus 85 ~Vi~n-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~----------~~~~~~~~~l 153 (179)
T TIGR00537 85 VILFN-PPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL----------NGEPDTFDKL 153 (179)
T ss_pred EEEEC-CCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc----------CChHHHHHHH
Confidence 33322 134311 124667888888888888766543210 1122344677
Q ss_pred HhCCceeee
Q 024907 194 MSNGFGVGM 202 (260)
Q Consensus 194 ~~~Gw~~~~ 202 (260)
..+||.++.
T Consensus 154 ~~~gf~~~~ 162 (179)
T TIGR00537 154 DERGFRYEI 162 (179)
T ss_pred HhCCCeEEE
Confidence 899999754
No 81
>PHA03412 putative methyltransferase; Provisional
Probab=38.06 E-value=19 Score=32.42 Aligned_cols=31 Identities=16% Similarity=0.143 Sum_probs=25.1
Q ss_pred eEEEeCCCCCCcccccCCCC---CcEEEEeChHH
Q 024907 57 QVVLLTDGMDTRPYRLNWPT---STIIFDISPER 87 (260)
Q Consensus 57 QVV~LGaGlDTR~~Rl~~~~---~~~~~EvD~P~ 87 (260)
-+..-|||.||-.||=+|.+ -+.+++||+-+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (241)
T PHA03412 195 LEMNPGCGIDTGYYLEDWKGVKPLCEVVCMEFNE 228 (241)
T ss_pred eeecCCCCccceeehhhccCCCccceEEEEeecC
Confidence 58899999999999998863 35688888853
No 82
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=37.68 E-value=2.7e+02 Score=24.13 Aligned_cols=99 Identities=8% Similarity=-0.022 Sum_probs=59.4
Q ss_pred ceEEEeCCCCCCcccccCCCCCcEEEEeChHHHHHHHHHHHhhcCCC------------CCCceeEEeccCCCchHHHHH
Q 024907 56 KQVVLLTDGMDTRPYRLNWPTSTIIFDISPERIFKISAEKLEGVGAK------------IPRSCLFLHVPLESSNIQQAL 123 (260)
Q Consensus 56 ~QVV~LGaGlDTR~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~------------~p~~~~~v~vd~~~~dw~~~L 123 (260)
..|+.+|||.-.-+.-|... |..|.=||.-++--.|. ..+.+.. ...+.++...|+.. |...
T Consensus 39 ~rvL~~gCG~G~da~~LA~~-G~~V~avD~s~~Ai~~~--~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~--l~~~- 112 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQ-GHEVLGVELSELAVEQF--FAENGLTPQTRQSGEFEHYQAGEITIYCGDFFA--LTAA- 112 (218)
T ss_pred CeEEEeCCCChHhHHHHHhC-CCeEEEEccCHHHHHHH--HHHcCCCccccccccccccccCceEEEECcccC--CCcc-
Confidence 47999999988766666433 67889999864422221 1111110 01245555666542 2110
Q ss_pred HhcCCCCCCCeEEEEccC-CCCCHHHHHHHHHHHHhccCCCcE
Q 024907 124 RAKGFNGNRPSVWAIQGL-PVMTLASFEDVLLLVGSLAMNKCL 165 (260)
Q Consensus 124 ~~~Gfd~~~Ptl~i~EGv-~Yl~~~~~~~ll~~i~~~~a~gs~ 165 (260)
+...-.+++-.++ +.++++.-...++.|.++..||+.
T Consensus 113 -----~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~ 150 (218)
T PRK13255 113 -----DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCR 150 (218)
T ss_pred -----cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCe
Confidence 1112256666666 578988888999999999889874
No 83
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=37.10 E-value=2.4e+02 Score=23.37 Aligned_cols=100 Identities=15% Similarity=0.136 Sum_probs=53.9
Q ss_pred cceEEEeCCCCCCccccc--CCCCCcEEEEeCh-HHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCC
Q 024907 55 LKQVVLLTDGMDTRPYRL--NWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGN 131 (260)
Q Consensus 55 ~~QVV~LGaGlDTR~~Rl--~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~ 131 (260)
...|+-+|||.-.-...+ ..+...+++=+|. |++++.-++.+. . ..+++++..|+.... +..+
T Consensus 40 ~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~----~~~i~~~~~d~~~~~---------~~~~ 105 (223)
T TIGR01934 40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L----PLNIEFIQADAEALP---------FEDN 105 (223)
T ss_pred CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c----CCCceEEecchhcCC---------CCCC
Confidence 358999999976654444 2332235555555 444444333333 1 235777777765211 1222
Q ss_pred CCeEEEEccC-CCCCHHHHHHHHHHHHhccCCCcEEE-EeC
Q 024907 132 RPSVWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFL-GEL 170 (260)
Q Consensus 132 ~Ptl~i~EGv-~Yl~~~~~~~ll~~i~~~~a~gs~l~-~d~ 170 (260)
.--++++-.+ ..+. +...+++.+.+...||+.++ .++
T Consensus 106 ~~D~i~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 106 SFDAVTIAFGLRNVT--DIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred cEEEEEEeeeeCCcc--cHHHHHHHHHHHcCCCcEEEEEEe
Confidence 3334444333 3332 34567888888777887655 443
No 84
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=35.70 E-value=1.9e+02 Score=23.99 Aligned_cols=101 Identities=10% Similarity=0.098 Sum_probs=55.6
Q ss_pred cceEEEeCCCCCCccccc--CCCCCcEEEEeChHHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCCC
Q 024907 55 LKQVVLLTDGMDTRPYRL--NWPTSTIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNR 132 (260)
Q Consensus 55 ~~QVV~LGaGlDTR~~Rl--~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~~ 132 (260)
..+|+.+|||-=.-..-+ ......+++-+|.-+.. .. + +..++..|+......+.+... +..+.
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~~----~-~i~~~~~d~~~~~~~~~l~~~-~~~~~ 98 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------PI----E-NVDFIRGDFTDEEVLNKIRER-VGDDK 98 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------cC----C-CceEEEeeCCChhHHHHHHHH-hCCCC
Confidence 358999999976532221 12123456666664432 11 1 466777787643333333321 23344
Q ss_pred CeEEEEccCC-C-----CC----HHHHHHHHHHHHhccCCCcEEEEe
Q 024907 133 PSVWAIQGLP-V-----MT----LASFEDVLLLVGSLAMNKCLFLGE 169 (260)
Q Consensus 133 Ptl~i~EGv~-Y-----l~----~~~~~~ll~~i~~~~a~gs~l~~d 169 (260)
.-++++.+.+ + +. .+....+++.+.+...||+.+++.
T Consensus 99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 5677776532 1 11 123467888888887888888875
No 85
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=34.76 E-value=48 Score=28.60 Aligned_cols=38 Identities=5% Similarity=-0.098 Sum_probs=30.7
Q ss_pred eEEEEccC-CCCCHHHHHHHHHHHHhccCCCcEEEEeCC
Q 024907 134 SVWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFLGELP 171 (260)
Q Consensus 134 tl~i~EGv-~Yl~~~~~~~ll~~i~~~~a~gs~l~~d~~ 171 (260)
-+|++=-| .||+++....+++.+.+...||+.++.-..
T Consensus 138 D~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 138 DLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp EEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred cEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 58888889 599999999999999999899998887643
No 86
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=34.15 E-value=37 Score=32.25 Aligned_cols=129 Identities=13% Similarity=0.173 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhh----ccCC-------cceEEEeCCCCCCcccccCCCCCcEEE--EeChHHHHHHHHHHHhhcCCCCCC
Q 024907 39 KFIDDKLLRTVN----HMDG-------LKQVVLLTDGMDTRPYRLNWPTSTIIF--DISPERIFKISAEKLEGVGAKIPR 105 (260)
Q Consensus 39 r~iDd~l~~~~~----~~~g-------~~QVV~LGaGlDTR~~Rl~~~~~~~~~--EvD~P~v~~~K~~~l~~~~~~~p~ 105 (260)
..||+++.+-+. ...| .-|+|.|++|.+-..+-+..|+++-|+ |.+.+++++..+.+....+..| .
T Consensus 80 ~lId~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsP-a 158 (402)
T COG3598 80 QLIDEFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSP-A 158 (402)
T ss_pred hhhhHHhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCCh-H
Confidence 467877776332 1111 136778899999999888888776655 7888999999888888877543 3
Q ss_pred ceeEEec-cCC---------CchHHHHHHhcCCCCCCCeEEEEccC--CC----CCHHHHHHHHHHHHhccC-CCcEEEE
Q 024907 106 SCLFLHV-PLE---------SSNIQQALRAKGFNGNRPSVWAIQGL--PV----MTLASFEDVLLLVGSLAM-NKCLFLG 168 (260)
Q Consensus 106 ~~~~v~v-d~~---------~~dw~~~L~~~Gfd~~~Ptl~i~EGv--~Y----l~~~~~~~ll~~i~~~~a-~gs~l~~ 168 (260)
+.+.+-. |+. ...+...... -..-.+|.++|.--. +| .+..+++..++...+++- .+|.|+|
T Consensus 159 dvrn~dltd~~Gaa~~~d~l~pkl~rRfek-~~~Q~rp~~vViDp~v~f~~G~s~s~vqv~~fi~~~rkla~~l~caIiy 237 (402)
T COG3598 159 DVRNMDLTDVSGAADESDVLSPKLYRRFEK-ILEQKRPDFVVIDPFVAFYEGKSISDVQVKEFIKKTRKLARNLECAIIY 237 (402)
T ss_pred hhhheeccccccCCCccccccHHHHHHHHH-HHHHhCCCeEEEcchhhhcCCccchhHHHHHHHHHHHHHHHhcCCeEEE
Confidence 3333322 111 0112211110 012347888887765 34 345677888877777653 4666665
Q ss_pred e
Q 024907 169 E 169 (260)
Q Consensus 169 d 169 (260)
=
T Consensus 238 ~ 238 (402)
T COG3598 238 I 238 (402)
T ss_pred E
Confidence 4
No 87
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=32.84 E-value=45 Score=30.63 Aligned_cols=38 Identities=11% Similarity=0.027 Sum_probs=32.8
Q ss_pred eEEEEccC-CCCCHHHHHHHHHHHHhccCCCcEEEEeCC
Q 024907 134 SVWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFLGELP 171 (260)
Q Consensus 134 tl~i~EGv-~Yl~~~~~~~ll~~i~~~~a~gs~l~~d~~ 171 (260)
=+|++..| .|++++....+++.+.+...||+.++.-..
T Consensus 225 D~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~s 263 (287)
T PRK10611 225 DAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHS 263 (287)
T ss_pred ceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence 47888888 699999999999999999999998887654
No 88
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=32.34 E-value=2.1e+02 Score=29.60 Aligned_cols=127 Identities=12% Similarity=-0.013 Sum_probs=69.3
Q ss_pred ceEEEeCCCCCCcccccCCC-C-CcEEEEeChHHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCCCC
Q 024907 56 KQVVLLTDGMDTRPYRLNWP-T-STIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRP 133 (260)
Q Consensus 56 ~QVV~LGaGlDTR~~Rl~~~-~-~~~~~EvD~P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~~P 133 (260)
+.|+.||||.=.-+.-+... . .++-+|++...+-..|+.. ...+.. ..+++++..|+. +|.+.+ ...|
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~-~~ng~~-~~~v~~i~~D~~--~~l~~~-~~~f----- 609 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNF-ALNGLS-GRQHRLIQADCL--AWLKEA-REQF----- 609 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH-HHhCCC-ccceEEEEccHH--HHHHHc-CCCc-----
Confidence 58999999988866655322 2 2444555555443333333 333321 136788888874 455443 1123
Q ss_pred eEEEEccCCCCC-----------HHHHHHHHHHHHhccCCCcEEEEeCChhhhhhhcCCCcchhHHHHHHHHhCCceeee
Q 024907 134 SVWAIQGLPVMT-----------LASFEDVLLLVGSLAMNKCLFLGELPAWLAETEFGNKSTTEKWMDKLFMSNGFGVGM 202 (260)
Q Consensus 134 tl~i~EGv~Yl~-----------~~~~~~ll~~i~~~~a~gs~l~~d~~~~~~~~~~~~~~~~~~w~~~~~~~~Gw~~~~ 202 (260)
-+||+-- +|+. ......++..+.++..||+.++++..... +. . -.+.+...|+.++.
T Consensus 610 DlIilDP-P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~------~~---~--~~~~~~~~g~~~~~ 677 (702)
T PRK11783 610 DLIFIDP-PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG------FK---M--DEEGLAKLGLKAEE 677 (702)
T ss_pred CEEEECC-CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc------CC---h--hHHHHHhCCCeEEE
Confidence 3444331 2332 12345677787777889988887643210 10 0 13446778998865
Q ss_pred eC
Q 024907 203 VS 204 (260)
Q Consensus 203 ~~ 204 (260)
..
T Consensus 678 i~ 679 (702)
T PRK11783 678 IT 679 (702)
T ss_pred Ee
Confidence 43
No 89
>PLN02476 O-methyltransferase
Probab=31.75 E-value=4e+02 Score=24.32 Aligned_cols=109 Identities=10% Similarity=0.059 Sum_probs=62.7
Q ss_pred CCcceEEEeCCCCCCcccccC--CCCC--cEEEEeChHHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCC
Q 024907 53 DGLKQVVLLTDGMDTRPYRLN--WPTS--TIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGF 128 (260)
Q Consensus 53 ~g~~QVV~LGaGlDTR~~Rl~--~~~~--~~~~EvD~P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gf 128 (260)
.+.+.|+.+|+|.=--+..+. .+.+ +.-+|.|. +..+.-++.+++.+.. ++.+++..|.. +....|...+-
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~-e~~~~Ar~n~~~aGl~--~~I~li~GdA~--e~L~~l~~~~~ 191 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDS-NSLEVAKRYYELAGVS--HKVNVKHGLAA--ESLKSMIQNGE 191 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCH-HHHHHHHHHHHHcCCC--CcEEEEEcCHH--HHHHHHHhccc
Confidence 346789999987665555552 2322 34455554 5556666777776543 36777777654 34444532221
Q ss_pred CCCCCeEEEEccCCCCCHHHHHHHHHHHHhccCCCcEEEEeCC
Q 024907 129 NGNRPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGELP 171 (260)
Q Consensus 129 d~~~Ptl~i~EGv~Yl~~~~~~~ll~~i~~~~a~gs~l~~d~~ 171 (260)
.+.-=++..-+- +.+....+..+-++..+|+.|++|-.
T Consensus 192 -~~~FD~VFIDa~----K~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 192 -GSSYDFAFVDAD----KRMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred -CCCCCEEEECCC----HHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 011113333332 45566677777777789999999954
No 90
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=30.82 E-value=2.1e+02 Score=25.11 Aligned_cols=102 Identities=15% Similarity=0.152 Sum_probs=57.1
Q ss_pred ceEEEeCCCCCCcccccC--CCCCcEEEEeCh-HHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCCC
Q 024907 56 KQVVLLTDGMDTRPYRLN--WPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNR 132 (260)
Q Consensus 56 ~QVV~LGaGlDTR~~Rl~--~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~~ 132 (260)
..|+-+|||.=.-...+. .+.+.+++=+|+ |++++.-++.++..+. .+++++..|... +. +.+.-||
T Consensus 49 ~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~---~~i~~v~~da~~--lp--~~d~sfD--- 118 (233)
T PF01209_consen 49 DRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL---QNIEFVQGDAED--LP--FPDNSFD--- 118 (233)
T ss_dssp -EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT-----SEEEEE-BTTB------S-TT-EE---
T ss_pred CEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC---CCeeEEEcCHHH--hc--CCCCcee---
Confidence 589999999876555552 223568899999 4666666666665432 278899988762 21 2222233
Q ss_pred CeEEEEccCCCCCHHHHHHHHHHHHhccCCCcEE-EEeC
Q 024907 133 PSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLF-LGEL 170 (260)
Q Consensus 133 Ptl~i~EGv~Yl~~~~~~~ll~~i~~~~a~gs~l-~~d~ 170 (260)
.++++=|+-.++. ..+.++.+.+...||+.+ +.|+
T Consensus 119 -~v~~~fglrn~~d--~~~~l~E~~RVLkPGG~l~ile~ 154 (233)
T PF01209_consen 119 -AVTCSFGLRNFPD--RERALREMYRVLKPGGRLVILEF 154 (233)
T ss_dssp -EEEEES-GGG-SS--HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -EEEHHhhHHhhCC--HHHHHHHHHHHcCCCeEEEEeec
Confidence 5666666633432 234667777777788864 4564
No 91
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=30.57 E-value=2.8e+02 Score=24.26 Aligned_cols=167 Identities=13% Similarity=0.086 Sum_probs=86.9
Q ss_pred HHHHHHHHHhhccCCcc-eEEEeCCCCCCccccc--CCCCCcEEEEeChHHHH-HHHHHHHhhcCCCCCCceeEEeccCC
Q 024907 40 FIDDKLLRTVNHMDGLK-QVVLLTDGMDTRPYRL--NWPTSTIIFDISPERIF-KISAEKLEGVGAKIPRSCLFLHVPLE 115 (260)
Q Consensus 40 ~iDd~l~~~~~~~~g~~-QVV~LGaGlDTR~~Rl--~~~~~~~~~EvD~P~v~-~~K~~~l~~~~~~~p~~~~~v~vd~~ 115 (260)
-|=+.|++++.. .. .|+-+|+|.=.=+--+ ..| .++|.=-|..+.. .--.+-+...+. +.-..=+.+|+.
T Consensus 13 pIl~vL~~~l~~---~~~~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~--~Nv~~P~~lDv~ 86 (204)
T PF06080_consen 13 PILEVLKQYLPD---SGTRVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGL--PNVRPPLALDVS 86 (204)
T ss_pred HHHHHHHHHhCc---cCceEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCC--cccCCCeEeecC
Confidence 455667777652 23 4999999987744333 345 6888888876554 222222333321 111222455666
Q ss_pred CchHHHHHHhcCCCCCCCeEEEEccC-CCCCHHHHHHHHHHHHhccCCCcEEE-EeCChhhhhhhcCCCcchhHHHHHHH
Q 024907 116 SSNIQQALRAKGFNGNRPSVWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFL-GELPAWLAETEFGNKSTTEKWMDKLF 193 (260)
Q Consensus 116 ~~dw~~~L~~~Gfd~~~Ptl~i~EGv-~Yl~~~~~~~ll~~i~~~~a~gs~l~-~d~~~~~~~~~~~~~~~~~~w~~~~~ 193 (260)
...|.-... +++.+..--.+++==+ -..+-+.++.||+..+++..+|+.++ |--.. . .. .+.+.+..-..+.|
T Consensus 87 ~~~w~~~~~-~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~-~--~G-~~ts~SN~~FD~sL 161 (204)
T PF06080_consen 87 APPWPWELP-APLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFN-R--DG-KFTSESNAAFDASL 161 (204)
T ss_pred CCCCccccc-cccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcc-c--CC-EeCCcHHHHHHHHH
Confidence 554543321 2222333334444333 36788999999999999888877544 44210 0 00 01111111112223
Q ss_pred Hh--CCcee-eeeCHHHHHHHcCCCCC
Q 024907 194 MS--NGFGV-GMVSYKEVASSLGKELA 217 (260)
Q Consensus 194 ~~--~Gw~~-~~~~~~~~~~~~g~~~~ 217 (260)
.+ ..|.+ +..+...+|+..|..+.
T Consensus 162 r~rdp~~GiRD~e~v~~lA~~~GL~l~ 188 (204)
T PF06080_consen 162 RSRDPEWGIRDIEDVEALAAAHGLELE 188 (204)
T ss_pred hcCCCCcCccCHHHHHHHHHHCCCccC
Confidence 22 23665 45566777777776554
No 92
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=30.33 E-value=3.9e+02 Score=23.74 Aligned_cols=109 Identities=13% Similarity=0.148 Sum_probs=56.1
Q ss_pred CCcceEEEeCCCCCCccccc-CCC--CCcEEEEeChHHHHHHHHHHHhhcCCC-CCCceeEEeccCCCchHHHHHHhcCC
Q 024907 53 DGLKQVVLLTDGMDTRPYRL-NWP--TSTIIFDISPERIFKISAEKLEGVGAK-IPRSCLFLHVPLESSNIQQALRAKGF 128 (260)
Q Consensus 53 ~g~~QVV~LGaGlDTR~~Rl-~~~--~~~~~~EvD~P~v~~~K~~~l~~~~~~-~p~~~~~v~vd~~~~dw~~~L~~~Gf 128 (260)
+..+-|++||+|-=.-...+ ..+ ..++.+|+| |++++.-++.+...... ...+.+++..|.. .+.+.. ...|
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid-~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~--~~l~~~-~~~y 146 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDID-EKVIELSKKFLPSLAGSYDDPRVDLQIDDGF--KFLADT-ENTF 146 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCC-HHHHHHHHHHhHhhcccccCCceEEEECchH--HHHHhC-CCCc
Confidence 34458999999975533222 222 368889998 45656555555443211 1124555543332 222221 1123
Q ss_pred CCCCCeEEEEccC-CCCCHHH--HHHHHHHHHhccCCCcEEEEeC
Q 024907 129 NGNRPSVWAIQGL-PVMTLAS--FEDVLLLVGSLAMNKCLFLGEL 170 (260)
Q Consensus 129 d~~~Ptl~i~EGv-~Yl~~~~--~~~ll~~i~~~~a~gs~l~~d~ 170 (260)
| ++|+-.. .+-+... ..+.++.+.++..||+.+++..
T Consensus 147 D-----vIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 147 D-----VIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred c-----EEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 3 4444433 2222222 3456677777777888877653
No 93
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=30.13 E-value=3.3e+02 Score=22.82 Aligned_cols=101 Identities=17% Similarity=0.153 Sum_probs=52.8
Q ss_pred ceEEEeCCCCCCccccc--CCCCCcEEEEeChH-HHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCC-
Q 024907 56 KQVVLLTDGMDTRPYRL--NWPTSTIIFDISPE-RIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGN- 131 (260)
Q Consensus 56 ~QVV~LGaGlDTR~~Rl--~~~~~~~~~EvD~P-~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~- 131 (260)
..|+.+|||-=.-...+ ..+...+++-+|.. ..++.-++.+...+. ..+..++..|+.... +...
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~~---------~~~~~ 121 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL--SGNVEFVQGDAEALP---------FPDNS 121 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc--ccCeEEEecccccCC---------CCCCC
Confidence 57999999975433333 22324667777763 444433333333211 125667777765211 1111
Q ss_pred CCeEEEEccCCCCCHHHHHHHHHHHHhccCCCcEEE-Ee
Q 024907 132 RPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFL-GE 169 (260)
Q Consensus 132 ~Ptl~i~EGv~Yl~~~~~~~ll~~i~~~~a~gs~l~-~d 169 (260)
--.+++.-++.++. +...+++.+.++..+|+.++ .+
T Consensus 122 ~D~I~~~~~l~~~~--~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 122 FDAVTIAFGLRNVP--DIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred ccEEEEecccccCC--CHHHHHHHHHHhccCCcEEEEEE
Confidence 22444444443333 24567888888777877654 44
No 94
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=29.90 E-value=1.4e+02 Score=28.67 Aligned_cols=51 Identities=12% Similarity=0.070 Sum_probs=40.7
Q ss_pred chHHHHHHhcCCCCCCCeEEEEccCC-CCCHHHHHHHHHHHHhccCCCcEEEEe
Q 024907 117 SNIQQALRAKGFNGNRPSVWAIQGLP-VMTLASFEDVLLLVGSLAMNKCLFLGE 169 (260)
Q Consensus 117 ~dw~~~L~~~Gfd~~~Ptl~i~EGv~-Yl~~~~~~~ll~~i~~~~a~gs~l~~d 169 (260)
+++.+.|.. ..+..=|.++.-=.+ ||+++++.++++.|.+.+.||+++++=
T Consensus 282 ~si~~~L~~--~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~R 333 (380)
T PF11899_consen 282 DSIEEVLRR--LPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWR 333 (380)
T ss_pred ccHHHHHHh--CCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 567777764 345555777777775 999999999999999999999999874
No 95
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=29.73 E-value=3.5e+02 Score=22.92 Aligned_cols=116 Identities=16% Similarity=0.114 Sum_probs=67.5
Q ss_pred ceEEEeCCCCCC--cccccCCCCCcEEEEeCh-HHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCCC
Q 024907 56 KQVVLLTDGMDT--RPYRLNWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNR 132 (260)
Q Consensus 56 ~QVV~LGaGlDT--R~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~~ 132 (260)
..|+-+|||.=. ..+....+ +.+++=||. ++.++.-++.++..+. .+++++..|+.. +. . ...
T Consensus 47 ~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l---~~i~~~~~d~~~--~~-------~-~~~ 112 (187)
T PRK00107 47 ERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGL---KNVTVVHGRAEE--FG-------Q-EEK 112 (187)
T ss_pred CeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCC---CCEEEEeccHhh--CC-------C-CCC
Confidence 579999998664 43332344 567888888 5666655556665542 247777777642 11 1 123
Q ss_pred CeEEEEccCCCCCHHHHHHHHHHHHhccCCCcEEEEeCChhhhhhhcCCCcchhHHHHHHHHhCCceee
Q 024907 133 PSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGELPAWLAETEFGNKSTTEKWMDKLFMSNGFGVG 201 (260)
Q Consensus 133 Ptl~i~EGv~Yl~~~~~~~ll~~i~~~~a~gs~l~~d~~~~~~~~~~~~~~~~~~w~~~~~~~~Gw~~~ 201 (260)
.-++++-+. .....+++.+.++..||+.+++-...+.. .-+.+.....||.++
T Consensus 113 fDlV~~~~~-----~~~~~~l~~~~~~LkpGG~lv~~~~~~~~-----------~~l~~~~~~~~~~~~ 165 (187)
T PRK00107 113 FDVVTSRAV-----ASLSDLVELCLPLLKPGGRFLALKGRDPE-----------EEIAELPKALGGKVE 165 (187)
T ss_pred ccEEEEccc-----cCHHHHHHHHHHhcCCCeEEEEEeCCChH-----------HHHHHHHHhcCceEe
Confidence 345555443 12456788888888888887765432111 113344466799864
No 96
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=28.30 E-value=1.3e+02 Score=25.67 Aligned_cols=57 Identities=9% Similarity=0.038 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHHHhccCCCcEEEEeCChhhh---hhhcCCCcchhHHHHHHHHhCCcee
Q 024907 143 VMTLASFEDVLLLVGSLAMNKCLFLGELPAWLA---ETEFGNKSTTEKWMDKLFMSNGFGV 200 (260)
Q Consensus 143 Yl~~~~~~~ll~~i~~~~a~gs~l~~d~~~~~~---~~~~~~~~~~~~w~~~~~~~~Gw~~ 200 (260)
|+....-..|++.+++..+||..+-.+|..+.. .++.++.+...+ +...|..+||+.
T Consensus 59 ~~~s~~E~~l~~~~~~~l~pg~~lfVeY~~D~eT~~~L~~G~pp~~Tr-LG~~Ll~~GFtw 118 (170)
T PF06557_consen 59 FFGSPLEDELYKLFSRYLEPGGRLFVEYVEDRETRRQLQRGVPPAETR-LGFSLLKAGFTW 118 (170)
T ss_dssp HTTSHHHHHHHHHHHTT----SEEEEE-TT-HHHHHHHHTT--GGGSH-HHHHHHTTT--E
T ss_pred ccCChHHHHHHHHHHHHhhhcCeEEEEEecCHHHHHHHHcCCCcccch-hHHHHHhCCcEE
Confidence 555555578999999999999999999975432 223333322222 455678899985
No 97
>PRK10329 glutaredoxin-like protein; Provisional
Probab=28.14 E-value=2.1e+02 Score=20.66 Aligned_cols=47 Identities=19% Similarity=0.180 Sum_probs=31.1
Q ss_pred eeEEeccCCC-chHHHHHHhcCCCCCCCeEEEEccC-CCCCHHHHHHHHH
Q 024907 107 CLFLHVPLES-SNIQQALRAKGFNGNRPSVWAIQGL-PVMTLASFEDVLL 154 (260)
Q Consensus 107 ~~~v~vd~~~-~dw~~~L~~~Gfd~~~Ptl~i~EGv-~Yl~~~~~~~ll~ 154 (260)
..|..+|++. ..+.+.+...|. ...|++++-+.. ..+.++.+.++.-
T Consensus 26 I~~~~idi~~~~~~~~~~~~~g~-~~vPvv~i~~~~~~Gf~~~~l~~~~~ 74 (81)
T PRK10329 26 FDFEMINVDRVPEAAETLRAQGF-RQLPVVIAGDLSWSGFRPDMINRLHP 74 (81)
T ss_pred CceEEEECCCCHHHHHHHHHcCC-CCcCEEEECCEEEecCCHHHHHHHHH
Confidence 4455556652 456666766554 588999886555 5788888777653
No 98
>PRK07402 precorrin-6B methylase; Provisional
Probab=27.07 E-value=3.7e+02 Score=22.36 Aligned_cols=100 Identities=13% Similarity=0.151 Sum_probs=54.9
Q ss_pred cceEEEeCCCCCCccccc--CCCCCcEEEEeCh-HHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCC
Q 024907 55 LKQVVLLTDGMDTRPYRL--NWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGN 131 (260)
Q Consensus 55 ~~QVV~LGaGlDTR~~Rl--~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~ 131 (260)
...|+-+|||.=.-+.-+ ..+ +..++=||. |++++.-++.++..+. .+.+++..|+.. .+ +.+ . .
T Consensus 41 ~~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~~~~---~~v~~~~~d~~~-~~-~~~-----~-~ 108 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDRFGV---KNVEVIEGSAPE-CL-AQL-----A-P 108 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCC---CCeEEEECchHH-HH-hhC-----C-C
Confidence 357999999876644333 123 345665665 5666554444554432 256677666531 11 111 1 1
Q ss_pred CCeEEEEccCCCCCHHHHHHHHHHHHhccCCCcEEEEeCC
Q 024907 132 RPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGELP 171 (260)
Q Consensus 132 ~Ptl~i~EGv~Yl~~~~~~~ll~~i~~~~a~gs~l~~d~~ 171 (260)
.|..+...+. .....+++.+.+...||+.+++..+
T Consensus 109 ~~d~v~~~~~-----~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 109 APDRVCIEGG-----RPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CCCEEEEECC-----cCHHHHHHHHHHhcCCCeEEEEEee
Confidence 2333444432 1245677788877789988887754
No 99
>PRK09019 translation initiation factor Sui1; Validated
Probab=27.05 E-value=3.1e+02 Score=21.54 Aligned_cols=61 Identities=13% Similarity=0.098 Sum_probs=41.0
Q ss_pred CCeEEEEccCCCCCHHHHHHHHHHHHhccCCCcEEEEeCChhhhhhhcCCCcchhHHHHHHHHhCCceee
Q 024907 132 RPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGELPAWLAETEFGNKSTTEKWMDKLFMSNGFGVG 201 (260)
Q Consensus 132 ~Ptl~i~EGv~Yl~~~~~~~ll~~i~~~~a~gs~l~~d~~~~~~~~~~~~~~~~~~w~~~~~~~~Gw~~~ 201 (260)
..++-+.+|+ .++..++..|++.+.+.++-|..+-=+... +-.+-..-+.++|...||++.
T Consensus 44 GK~VTiI~Gl-~~~~~dlk~l~K~lKkk~gcGGtvk~~~Ie--------lQGD~r~~v~~~L~~~Gf~~k 104 (108)
T PRK09019 44 GKGVCLITGL-DLDDAELKKLAAELKKKCGCGGAVKDGVIE--------IQGDKRDLLKSLLEAKGMKVK 104 (108)
T ss_pred CCeEEEEeCC-cCCHHHHHHHHHHHHHHhcCCCeEEcCEEE--------EcCcHHHHHHHHHHHCCCeEE
Confidence 4589999998 678889999999999988877665422110 000001114577889999874
No 100
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=26.44 E-value=2.7e+02 Score=20.55 Aligned_cols=100 Identities=7% Similarity=0.036 Sum_probs=54.9
Q ss_pred cceEEEeCCCCCCccccc--CCCCCcEEEEeCh-HHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCC
Q 024907 55 LKQVVLLTDGMDTRPYRL--NWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGN 131 (260)
Q Consensus 55 ~~QVV~LGaGlDTR~~Rl--~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~ 131 (260)
...|+-+|||.=.-+..+ ..| +.+++=+|. +..++.-++.++..+. .+.+++..|... .+ ..+. ..||
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~~~~~~-~~-~~~~-~~~D-- 90 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGV---SNIVIVEGDAPE-AL-EDSL-PEPD-- 90 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCC---CceEEEeccccc-cC-hhhc-CCCC--
Confidence 358999999886555555 234 366777776 3444433333343321 146666666541 01 1111 1122
Q ss_pred CCeEEEEccCCCCCHHHHHHHHHHHHhccCCCcEEEEeC
Q 024907 132 RPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGEL 170 (260)
Q Consensus 132 ~Ptl~i~EGv~Yl~~~~~~~ll~~i~~~~a~gs~l~~d~ 170 (260)
.+|+ .+. .....++++.+.+...||+.+++..
T Consensus 91 --~v~~-~~~----~~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 91 --RVFI-GGS----GGLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred --EEEE-CCc----chhHHHHHHHHHHHcCCCCEEEEEe
Confidence 3443 332 2334678888998888999888763
No 101
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=26.23 E-value=4.1e+02 Score=22.58 Aligned_cols=101 Identities=11% Similarity=0.037 Sum_probs=51.3
Q ss_pred ceEEEeCCCCCCcccccCCCCCcEEEEeChH-HHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCCCCe
Q 024907 56 KQVVLLTDGMDTRPYRLNWPTSTIIFDISPE-RIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPS 134 (260)
Q Consensus 56 ~QVV~LGaGlDTR~~Rl~~~~~~~~~EvD~P-~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~~Pt 134 (260)
..|+.+|||.-+-...+... +..+.-+|.. +.++.-++.+...+. ...++..++. ++... ....|| .
T Consensus 50 ~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~----~~~~~~~~~~--~~~~~-~~~~fD----~ 117 (233)
T PRK05134 50 KRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESGL----KIDYRQTTAE--ELAAE-HPGQFD----V 117 (233)
T ss_pred CeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHHcCC----ceEEEecCHH--Hhhhh-cCCCcc----E
Confidence 47999999976655455322 3456666664 333433333333221 2344444432 22111 111122 3
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHhccCCCcEEEEeC
Q 024907 135 VWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGEL 170 (260)
Q Consensus 135 l~i~EGv~Yl~~~~~~~ll~~i~~~~a~gs~l~~d~ 170 (260)
+++...+.+... ...+++.+.+...+|+.+++..
T Consensus 118 Ii~~~~l~~~~~--~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 118 VTCMEMLEHVPD--PASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred EEEhhHhhccCC--HHHHHHHHHHHcCCCcEEEEEe
Confidence 444333334432 3457888888878888877664
No 102
>PF15076 DUF4543: Domain of unknown function (DUF4543)
Probab=26.15 E-value=29 Score=25.00 Aligned_cols=28 Identities=29% Similarity=0.457 Sum_probs=24.2
Q ss_pred hcCChHHHHHHHHHHHHhhhhcCccCcc
Q 024907 231 LRFSDDQMDTWRRELQRVEEEGDEEGFE 258 (260)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (260)
.||++..|.-|--|+++.|--+.|-++|
T Consensus 29 ~GfpdepmrE~ml~l~~LeqraeEqflE 56 (75)
T PF15076_consen 29 PGFPDEPMREYMLHLQALEQRAEEQFLE 56 (75)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999998877777665
No 103
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=26.13 E-value=2.1e+02 Score=22.90 Aligned_cols=48 Identities=15% Similarity=0.286 Sum_probs=33.3
Q ss_pred chHHHHHHhcCCCCCCCeEEEEccCCCCCHHHHHHHHHHHHhccCCCcEEEEeCCh
Q 024907 117 SNIQQALRAKGFNGNRPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGELPA 172 (260)
Q Consensus 117 ~dw~~~L~~~Gfd~~~Ptl~i~EGv~Yl~~~~~~~ll~~i~~~~a~gs~l~~d~~~ 172 (260)
.+..+.+..+ ++.+.|++++.+| +|+...|-..+ +++.||.++|-+|+
T Consensus 48 ~el~~ai~~a-~~~~~~~~I~V~G-----EEDL~~lPail--~aP~gs~V~YGQP~ 95 (121)
T PF04019_consen 48 EELIEAIKKA-LESGKPVVIFVDG-----EEDLAVLPAIL--YAPEGSVVLYGQPG 95 (121)
T ss_pred HHHHHHHHHH-HhCCCCEEEEEeC-----hHHHHHHHHHH--hCCCCCEEEECCCC
Confidence 4555666665 6668999999999 56654443333 24578999999885
No 104
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=25.63 E-value=5e+02 Score=23.36 Aligned_cols=113 Identities=12% Similarity=-0.051 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHhhccCCcceEEEeCCCCCCcccccCCCCCcEEEEeCh--HHHHHHHHHHHhhcCCCCCCceeEEecc
Q 024907 36 LTTKFIDDKLLRTVNHMDGLKQVVLLTDGMDTRPYRLNWPTSTIIFDISP--ERIFKISAEKLEGVGAKIPRSCLFLHVP 113 (260)
Q Consensus 36 ~Rtr~iDd~l~~~~~~~~g~~QVV~LGaGlDTR~~Rl~~~~~~~~~EvD~--P~v~~~K~~~l~~~~~~~p~~~~~v~vd 113 (260)
..|+.+-+.+.+... ++ ..|+-+|||.=.-+..+......+++=+|. ..+-..|+ .+...+. ......+..+
T Consensus 144 ~tt~l~l~~l~~~~~--~g-~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~-n~~~n~~--~~~~~~~~~~ 217 (288)
T TIGR00406 144 PTTSLCLEWLEDLDL--KD-KNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARK-NAELNQV--SDRLQVKLIY 217 (288)
T ss_pred HHHHHHHHHHHhhcC--CC-CEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHH-HHHHcCC--CcceEEEecc
Confidence 456666667766543 34 579999999854433332111234555554 33333333 2232221 1123333222
Q ss_pred CCCchHHHHHHhcCCCCCCCeEEEEccCCCCCHHHHHHHHHHHHhccCCCcEEEEe
Q 024907 114 LESSNIQQALRAKGFNGNRPSVWAIQGLPVMTLASFEDVLLLVGSLAMNKCLFLGE 169 (260)
Q Consensus 114 ~~~~dw~~~L~~~Gfd~~~Ptl~i~EGv~Yl~~~~~~~ll~~i~~~~a~gs~l~~d 169 (260)
.. ... ...--++++-.+ .+.+..++..+.+...||+.+++.
T Consensus 218 ~~------~~~-----~~~fDlVvan~~----~~~l~~ll~~~~~~LkpgG~li~s 258 (288)
T TIGR00406 218 LE------QPI-----EGKADVIVANIL----AEVIKELYPQFSRLVKPGGWLILS 258 (288)
T ss_pred cc------ccc-----CCCceEEEEecC----HHHHHHHHHHHHHHcCCCcEEEEE
Confidence 11 011 123346665433 445567888888888899888764
No 105
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=25.63 E-value=4.3e+02 Score=24.73 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=31.1
Q ss_pred CCeEEEEccC-CCCCHHHHHHHHHHHHhccCCCcEEEEeC
Q 024907 132 RPSVWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFLGEL 170 (260)
Q Consensus 132 ~Ptl~i~EGv-~Yl~~~~~~~ll~~i~~~~a~gs~l~~d~ 170 (260)
..|+.+--|- ..|+++++.+|++.|.+.++++.++.++.
T Consensus 57 ~~tiy~GGGTPs~L~~~~l~~ll~~i~~~~~~~~eitiE~ 96 (353)
T PRK05904 57 FKTIYLGGGTPNCLNDQLLDILLSTIKPYVDNNCEFTIEC 96 (353)
T ss_pred eEEEEECCCccccCCHHHHHHHHHHHHHhcCCCCeEEEEe
Confidence 3477777777 58999999999999998876777777774
No 106
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=24.85 E-value=4.5e+02 Score=26.27 Aligned_cols=84 Identities=12% Similarity=0.078 Sum_probs=49.8
Q ss_pred eChHHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCCCCeEEEEccCCCCCHHHHHHHHHHHHhccCC
Q 024907 83 ISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPSVWAIQGLPVMTLASFEDVLLLVGSLAMN 162 (260)
Q Consensus 83 vD~P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~~Ptl~i~EGv~Yl~~~~~~~ll~~i~~~~a~ 162 (260)
+|...+-+.=+++.++.+-..+.....-...+......+.|+.- | .+.-.+++=|=-.-|+|.++++||..+.++.+.
T Consensus 112 ~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaL-y-r~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~ 189 (501)
T COG3845 112 IDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKAL-Y-RGARLLILDEPTAVLTPQEADELFEILRRLAAE 189 (501)
T ss_pred cCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHH-h-cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC
Confidence 45555544444455555544322233333333344555555432 1 235567777766689999999999999998877
Q ss_pred CcEEEE
Q 024907 163 KCLFLG 168 (260)
Q Consensus 163 gs~l~~ 168 (260)
|-.++|
T Consensus 190 G~tIi~ 195 (501)
T COG3845 190 GKTIIF 195 (501)
T ss_pred CCEEEE
Confidence 776654
No 107
>PRK01581 speE spermidine synthase; Validated
Probab=24.84 E-value=6.3e+02 Score=24.27 Aligned_cols=108 Identities=9% Similarity=0.126 Sum_probs=55.0
Q ss_pred cCCcceEEEeCCCCCCccccc-CCC--CCcEEEEeChHHHHHHHHH--HHhhc---CCCCCCceeEEeccCCCchHHHHH
Q 024907 52 MDGLKQVVLLTDGMDTRPYRL-NWP--TSTIIFDISPERIFKISAE--KLEGV---GAKIPRSCLFLHVPLESSNIQQAL 123 (260)
Q Consensus 52 ~~g~~QVV~LGaGlDTR~~Rl-~~~--~~~~~~EvD~P~v~~~K~~--~l~~~---~~~~p~~~~~v~vd~~~~dw~~~L 123 (260)
+...+.|+++|+|-=.-...+ ..+ ..+..+|+| |+|++.-++ .+... .... ++.+++..|.. +|....
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEID-peVIelAr~~~~L~~~~~~~~~D-pRV~vvi~Da~--~fL~~~ 223 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLD-GSMINMARNVPELVSLNKSAFFD-NRVNVHVCDAK--EFLSSP 223 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCC-HHHHHHHHhccccchhccccCCC-CceEEEECcHH--HHHHhc
Confidence 355678999999832211111 233 468899999 667665443 22211 1112 25666666654 343322
Q ss_pred HhcCCCCCCCeEEEEccC-C---CCCHHHHHHHHHHHHhccCCCcEEEEe
Q 024907 124 RAKGFNGNRPSVWAIQGL-P---VMTLASFEDVLLLVGSLAMNKCLFLGE 169 (260)
Q Consensus 124 ~~~Gfd~~~Ptl~i~EGv-~---Yl~~~~~~~ll~~i~~~~a~gs~l~~d 169 (260)
. ..|| +|++-.- . ....--..+.++.+.+...||+.++.-
T Consensus 224 ~-~~YD-----VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 224 S-SLYD-----VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred C-CCcc-----EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 1 1232 3333321 1 011111245677778777788887654
No 108
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=23.82 E-value=1.7e+02 Score=26.58 Aligned_cols=36 Identities=8% Similarity=-0.057 Sum_probs=31.2
Q ss_pred EEEEccC-CCCCHHHHHHHHHHHHhccCCCcEEEEeC
Q 024907 135 VWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFLGEL 170 (260)
Q Consensus 135 l~i~EGv-~Yl~~~~~~~ll~~i~~~~a~gs~l~~d~ 170 (260)
+|.+==| .||+.+...++++.+.....||+.+..-.
T Consensus 205 ~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 205 LIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 7778888 59999999999999999888999887654
No 109
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=23.69 E-value=5.4e+02 Score=23.14 Aligned_cols=117 Identities=12% Similarity=0.164 Sum_probs=62.8
Q ss_pred HHHHHHHHHhhccCCcceEEEeCCCCCCcccccC--CCCCcEEEEeCh-HHHHHHHHHHHhhcCCCCCCceeEEeccCCC
Q 024907 40 FIDDKLLRTVNHMDGLKQVVLLTDGMDTRPYRLN--WPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLES 116 (260)
Q Consensus 40 ~iDd~l~~~~~~~~g~~QVV~LGaGlDTR~~Rl~--~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~ 116 (260)
.++..+.+.+.. .+...|+-+|||.=.-+..+. .+ +.+++-+|. |+.++.-++.++..+. +.+++++..|+..
T Consensus 108 lv~~~l~~~~~~-~~~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~--~~~i~~~~~D~~~ 183 (284)
T TIGR03533 108 LIEDGFAPWLEP-EPVKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGL--EDRVTLIQSDLFA 183 (284)
T ss_pred HHHHHHHHHhcc-CCCCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEECchhh
Confidence 444445444321 223579999999877655552 33 456666666 4555543444444332 2357777777531
Q ss_pred chHHHHHHhcCCCCCCCeEEEEccCCCCC--------------H-----------HHHHHHHHHHHhccCCCcEEEEeCC
Q 024907 117 SNIQQALRAKGFNGNRPSVWAIQGLPVMT--------------L-----------ASFEDVLLLVGSLAMNKCLFLGELP 171 (260)
Q Consensus 117 ~dw~~~L~~~Gfd~~~Ptl~i~EGv~Yl~--------------~-----------~~~~~ll~~i~~~~a~gs~l~~d~~ 171 (260)
.+.. ..--++++-- +|.+ + +....+++.+.+...+|+.++++..
T Consensus 184 -----~~~~-----~~fD~Iv~NP-Py~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 184 -----ALPG-----RKYDLIVSNP-PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred -----ccCC-----CCccEEEECC-CCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1111 1122333310 1211 1 2246678888888889999999865
No 110
>PRK14968 putative methyltransferase; Provisional
Probab=23.47 E-value=3.9e+02 Score=21.46 Aligned_cols=123 Identities=11% Similarity=0.053 Sum_probs=67.1
Q ss_pred ceEEEeCCCCCCcccccCCCCCcEEEEeCh-HHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCCCCe
Q 024907 56 KQVVLLTDGMDTRPYRLNWPTSTIIFDISP-ERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPS 134 (260)
Q Consensus 56 ~QVV~LGaGlDTR~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~~Pt 134 (260)
..|+.+|||--.-...+... +.+++-+|. |++++.-++.+...+.. ..+..++..|+.. .+. ...-.
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~~~~~~~d~~~-----~~~-----~~~~d 92 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIR-NNGVEVIRSDLFE-----PFR-----GDKFD 92 (188)
T ss_pred CEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCC-CcceEEEeccccc-----ccc-----ccCce
Confidence 47999999977766665322 345555555 55655544444443321 1125566665431 111 11234
Q ss_pred EEEEccCCCCC---------------------HHHHHHHHHHHHhccCCCcEEEEeCChhhhhhhcCCCcchhHHHHHHH
Q 024907 135 VWAIQGLPVMT---------------------LASFEDVLLLVGSLAMNKCLFLGELPAWLAETEFGNKSTTEKWMDKLF 193 (260)
Q Consensus 135 l~i~EGv~Yl~---------------------~~~~~~ll~~i~~~~a~gs~l~~d~~~~~~~~~~~~~~~~~~w~~~~~ 193 (260)
++++-. +|+. ......+++.+.+...||+.+++-.+... ....+.+++
T Consensus 93 ~vi~n~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~----------~~~~l~~~~ 161 (188)
T PRK14968 93 VILFNP-PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLT----------GEDEVLEYL 161 (188)
T ss_pred EEEECC-CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccC----------CHHHHHHHH
Confidence 555422 3433 23356678888888888887766543210 112245678
Q ss_pred HhCCceee
Q 024907 194 MSNGFGVG 201 (260)
Q Consensus 194 ~~~Gw~~~ 201 (260)
...||.+.
T Consensus 162 ~~~g~~~~ 169 (188)
T PRK14968 162 EKLGFEAE 169 (188)
T ss_pred HHCCCeee
Confidence 88999864
No 111
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=23.36 E-value=2.6e+02 Score=27.31 Aligned_cols=99 Identities=7% Similarity=0.091 Sum_probs=54.1
Q ss_pred ceEEEeCCCCCCccc---ccC--CCCCcEEEEeCh-H-HHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCC
Q 024907 56 KQVVLLTDGMDTRPY---RLN--WPTSTIIFDISP-E-RIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGF 128 (260)
Q Consensus 56 ~QVV~LGaGlDTR~~---Rl~--~~~~~~~~EvD~-P-~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gf 128 (260)
..|+.+|||-=.... +-- .....++|=|.- | .++..| ++++..+- .++++.+..|++. |.
T Consensus 188 ~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~-~~v~~n~w--~~~V~vi~~d~r~--v~-------- 254 (448)
T PF05185_consen 188 KVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ-KRVNANGW--GDKVTVIHGDMRE--VE-------- 254 (448)
T ss_dssp -EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH-HHHHHTTT--TTTEEEEES-TTT--SC--------
T ss_pred eEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH-HHHHhcCC--CCeEEEEeCcccC--CC--------
Confidence 469999999887543 321 012356666654 3 344443 33344432 2378999999873 32
Q ss_pred CCCCCeEEEEccC-CCCCHHHHHHHHHHHHhccCCCcEEE
Q 024907 129 NGNRPSVWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFL 167 (260)
Q Consensus 129 d~~~Ptl~i~EGv-~Yl~~~~~~~ll~~i~~~~a~gs~l~ 167 (260)
.|.+-=++|+|-+ .++..|-.-+.|....+...|++.++
T Consensus 255 lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 255 LPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp HSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred CCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 1225569999999 66655545556777777666776655
No 112
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=22.13 E-value=6e+02 Score=23.56 Aligned_cols=40 Identities=15% Similarity=0.257 Sum_probs=30.0
Q ss_pred CCCeEEEEccC-CCCCHHHHHHHHHHHHhccCCCcEEEEeC
Q 024907 131 NRPSVWAIQGL-PVMTLASFEDVLLLVGSLAMNKCLFLGEL 170 (260)
Q Consensus 131 ~~Ptl~i~EGv-~Yl~~~~~~~ll~~i~~~~a~gs~l~~d~ 170 (260)
...|+.+-=|- ..++++.+..|++.|.+..+++.++.++.
T Consensus 51 ~v~~iyfGGGTPs~l~~~~l~~ll~~i~~~~~~~~eitiE~ 91 (350)
T PRK08446 51 KIESVFIGGGTPSTVSAKFYEPIFEIISPYLSKDCEITTEA 91 (350)
T ss_pred ceeEEEECCCccccCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 34577777777 48999999999999988755666776664
No 113
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=21.99 E-value=4.5e+02 Score=25.37 Aligned_cols=40 Identities=13% Similarity=0.096 Sum_probs=32.9
Q ss_pred CCCeEEEEccC-CCCCHHHHHHHHHHHHhcc---CCCcEEEEeC
Q 024907 131 NRPSVWAIQGL-PVMTLASFEDVLLLVGSLA---MNKCLFLGEL 170 (260)
Q Consensus 131 ~~Ptl~i~EGv-~Yl~~~~~~~ll~~i~~~~---a~gs~l~~d~ 170 (260)
..-|+++==|- .+|++++++.|+..|.+.+ ++..+|.+|.
T Consensus 87 ~v~ti~~GGGTPslL~~~~l~~ll~~l~~~~~~~~~~~EitiE~ 130 (416)
T COG0635 87 EVKTIYFGGGTPSLLSPEQLERLLKALRELFNDLDPDAEITIEA 130 (416)
T ss_pred eEEEEEECCCccccCCHHHHHHHHHHHHHhcccCCCCceEEEEe
Confidence 35578888888 5999999999999999988 2447888886
No 114
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=21.41 E-value=1.4e+02 Score=22.13 Aligned_cols=95 Identities=11% Similarity=0.030 Sum_probs=34.9
Q ss_pred CCCCCcccccCCCCC--cEEEEeChHHHHHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCCCCeEEEEcc
Q 024907 63 DGMDTRPYRLNWPTS--TIIFDISPERIFKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNRPSVWAIQG 140 (260)
Q Consensus 63 aGlDTR~~Rl~~~~~--~~~~EvD~P~v~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~~Ptl~i~EG 140 (260)
.|.-|..+--..+.. .+++-||..+-.+..++.+++.+ .+.+.+++..+.. +....+.. ..--++..-|
T Consensus 7 ~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~--~~~~~~~~~g~s~--~~l~~~~~-----~~~dli~iDg 77 (106)
T PF13578_consen 7 SGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAG--LSDRVEFIQGDSP--DFLPSLPD-----GPIDLIFIDG 77 (106)
T ss_dssp --------------------EEEESS------------GG--G-BTEEEEES-TH--HHHHHHHH-------EEEEEEES
T ss_pred cccccccccccccccccCCEEEEECCCcccccchhhhhcC--CCCeEEEEEcCcH--HHHHHcCC-----CCEEEEEECC
Confidence 666665444322211 35677776553333344444322 1236777777764 34444441 1224555555
Q ss_pred C-CCCCHHHHHHHHHHHHhccCCCcEEEEe
Q 024907 141 L-PVMTLASFEDVLLLVGSLAMNKCLFLGE 169 (260)
Q Consensus 141 v-~Yl~~~~~~~ll~~i~~~~a~gs~l~~d 169 (260)
- .| +.+..-+..+-.+.+||+.|++|
T Consensus 78 ~H~~---~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 78 DHSY---EAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ---H---HHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCCH---HHHHHHHHHHHHHcCCCeEEEEe
Confidence 4 23 44555555666666789998887
No 115
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=20.74 E-value=2e+02 Score=26.36 Aligned_cols=46 Identities=11% Similarity=0.135 Sum_probs=32.3
Q ss_pred CCcceEEEeCCCCCCccccc---CCCCCcEEEEeChHHHHHHHHHHHhhc
Q 024907 53 DGLKQVVLLTDGMDTRPYRL---NWPTSTIIFDISPERIFKISAEKLEGV 99 (260)
Q Consensus 53 ~g~~QVV~LGaGlDTR~~Rl---~~~~~~~~~EvD~P~v~~~K~~~l~~~ 99 (260)
+..+-|+++|.|-=.....+ +....++.+||| |+|++.-++.+...
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID-~~Vi~~ar~~l~~~ 123 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEID-PAVIELARKYLPEP 123 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcC-HHHHHHHHHhccCc
Confidence 34468999998876644433 334578899999 46778877777664
No 116
>PRK06922 hypothetical protein; Provisional
Probab=20.18 E-value=3.4e+02 Score=28.15 Aligned_cols=102 Identities=11% Similarity=0.066 Sum_probs=56.3
Q ss_pred ceEEEeCCCCCCcccccC--CCCCcEEEEeChHHH-HHHHHHHHhhcCCCCCCceeEEeccCCCchHHHHHHhcCCCCCC
Q 024907 56 KQVVLLTDGMDTRPYRLN--WPTSTIIFDISPERI-FKISAEKLEGVGAKIPRSCLFLHVPLESSNIQQALRAKGFNGNR 132 (260)
Q Consensus 56 ~QVV~LGaGlDTR~~Rl~--~~~~~~~~EvD~P~v-~~~K~~~l~~~~~~~p~~~~~v~vd~~~~dw~~~L~~~Gfd~~~ 132 (260)
..|+-+|||.=.-...+. .| +..++-+|..+. ++.-++.+...+ .+.+++..|.. ++... |.++.
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDIS~~MLe~Ararl~~~g----~~ie~I~gDa~--dLp~~-----fedeS 487 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEETE-DKRIYGIDISENVIDTLKKKKQNEG----RSWNVIKGDAI--NLSSS-----FEKES 487 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcC----CCeEEEEcchH--hCccc-----cCCCC
Confidence 579999999855444442 34 578888888654 333222222221 24566666653 22111 22222
Q ss_pred CeEEEEccC-----CCCC-------HHHHHHHHHHHHhccCCCcEEE-Ee
Q 024907 133 PSVWAIQGL-----PVMT-------LASFEDVLLLVGSLAMNKCLFL-GE 169 (260)
Q Consensus 133 Ptl~i~EGv-----~Yl~-------~~~~~~ll~~i~~~~a~gs~l~-~d 169 (260)
--++++=.+ .|++ .+....+|+.+.+...||+.++ .|
T Consensus 488 FDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 488 VDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred EEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 233433221 1332 4567888888888878888765 45
Done!