BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024908
(260 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LJS|A Chain A, Crystal Structure Of Fructokinase From Xylella Fastidiosa
pdb|3LJS|B Chain B, Crystal Structure Of Fructokinase From Xylella Fastidiosa
pdb|3LKI|A Chain A, Crystal Structure Of Fructokinase With Bound Atp From
Xylella Fastidiosa
pdb|3LKI|B Chain B, Crystal Structure Of Fructokinase With Bound Atp From
Xylella Fastidiosa
Length = 338
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/262 (33%), Positives = 124/262 (47%), Gaps = 8/262 (3%)
Query: 1 MLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNL 60
L + E V T G+ STA+TALAFV L A GER F F+R P+AD+L
Sbjct: 67 FLFDSFAEAGVVTDGIVRTSTAKTALAFVALDAHGERSFSFYRPPAADLLFRVEHFQDAS 126
Query: 61 IKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMS 120
IFH S S A+ +G+I+S+D N R LWP+ E +
Sbjct: 127 FSDALIFHACSNSXTDADIAEVTFEGXRRAQAAGAIVSFDLNFRPXLWPNGENPASRLWK 186
Query: 121 IWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFKG 180
AD++K+S +E+ +L D N V+++L+ +LL+VT+ + +YT+ G
Sbjct: 187 GLSLADVVKLSSEELDYLA-NTLAADANAVIQQLWQGRAQLLLVTDAAGPVHWYTRTAGG 245
Query: 181 RVPGVKTKAVDTTGAGDSFVSGILNCL-------AADQNLIKDENRLREALLFANACGAL 233
VP + + D+ AGD+FV G L AA + D + L FA A GAL
Sbjct: 246 EVPTFRVQVQDSNAAGDAFVGGXLYTFAQQFDDAAALIDFCHDPESIVSTLRFAAAVGAL 305
Query: 234 TVTERGAIPALPTKEAALKLLH 255
VT +GA A P L L+
Sbjct: 306 AVTRQGAFTAXPXLSEVLSLIQ 327
>pdb|1TZ6|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
pdb|1TZ6|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
Length = 339
Score = 130 bits (328), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 121/245 (49%), Gaps = 7/245 (2%)
Query: 1 MLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNL 60
L + ++N VD + +R D+ +A+ V L ADGER F + HP AD + +L
Sbjct: 81 FLRQVFQDNGVDVTFLRLDADLTSAVLIVNLTADGERSFTYLVHPGADTYVSPQDLPP-- 138
Query: 61 IKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMS 120
+Q F++ SI L P R L +E+G + +D NLR +W + + E I
Sbjct: 139 FRQYEWFYFSSIGLTDRPAREACLEGARRMREAGGYVLFDVNLRSKMWGNTDEIPELIAR 198
Query: 121 IWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFKG 180
A I KVS DE+ L+G D L L I++ G+ G T E +
Sbjct: 199 SAALASICKVSADELCQLSGASHWQDARYYLRDL---GCDTTIISLGADGALLITAEGEF 255
Query: 181 RVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGA 240
P + VDTTGAGD+FV G+L L+ + D L EA+ ANACGA+ VT +GA
Sbjct: 256 HFPAPRVDVVDTTGAGDAFVGGLLFTLS--RANCWDHALLAEAISNANACGAMAVTAKGA 313
Query: 241 IPALP 245
+ ALP
Sbjct: 314 MTALP 318
>pdb|1TYY|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TYY|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TZ3|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
pdb|1TZ3|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
Length = 339
Score = 127 bits (319), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 118/245 (48%), Gaps = 7/245 (2%)
Query: 1 MLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNL 60
L + ++N VD + +R D+ +A+ V L ADGER F + HP AD + +L
Sbjct: 81 FLRQVFQDNGVDVTFLRLDADLTSAVLIVNLTADGERSFTYLVHPGADTYVSPQDLPP-- 138
Query: 61 IKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMS 120
+Q F++ SI L P R L +E+G + +D NLR W + + E I
Sbjct: 139 FRQYEWFYFSSIGLTDRPAREACLEGARRXREAGGYVLFDVNLRSKXWGNTDEIPELIAR 198
Query: 121 IWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFKG 180
A I KVS DE+ L+G D L L I++ G+ G T E +
Sbjct: 199 SAALASICKVSADELCQLSGASHWQDARYYLRDL---GCDTTIISLGADGALLITAEGEF 255
Query: 181 RVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGA 240
P + VDTTGAGD+FV G+L L+ + D L EA+ ANACGA VT +GA
Sbjct: 256 HFPAPRVDVVDTTGAGDAFVGGLLFTLS--RANCWDHALLAEAISNANACGAXAVTAKGA 313
Query: 241 IPALP 245
ALP
Sbjct: 314 XTALP 318
>pdb|3HJ6|A Chain A, Structure Of Halothermothrix Orenii Fructokinase (Frk)
pdb|3HJ6|B Chain B, Structure Of Halothermothrix Orenii Fructokinase (Frk)
Length = 327
Score = 110 bits (275), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 122/251 (48%), Gaps = 13/251 (5%)
Query: 2 LANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLI 61
L ++LK + T G++ D RT + +V+ ++ ++L +R AD L E ++ LI
Sbjct: 86 LLDVLKGEQIITDGIQQDKERRTTIVYVS-KSTRTPDWLPYRE--ADXYLQEDDIIFELI 142
Query: 62 KQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSI 121
K+ +FH + L +P R T + A N A+E G I+ +DP R LWP + + I
Sbjct: 143 KRSKVFHLSTFILSRKPARDTAIKAFNYAREQGKIVCFDPCYRKVLWPEGDDGAGVVEEI 202
Query: 122 WDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFKGR 181
+AD +K S D+ L G D + +++ +K +I+T G +G E R
Sbjct: 203 ISRADFVKPSLDDARHLFGPDSPEN---YVKRYLELGVKAVILTLGEEGVIASDGEEIIR 259
Query: 182 VPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGAI 241
+P AVD TGAGD+F SG + L D ++ ++ N A + GA+
Sbjct: 260 IPAFSEDAVDVTGAGDAFWSGFICGLL-------DGYTVKRSIKLGNGVAAFKIRGVGAL 312
Query: 242 PALPTKEAALK 252
+P+KE +K
Sbjct: 313 SPVPSKEDIIK 323
>pdb|3IQ0|A Chain A, Crystal Structure Of A Putative Ribokinase Ii In Complex
With Atp And Mg+2 From E.Coli
pdb|3IQ0|B Chain B, Crystal Structure Of A Putative Ribokinase Ii In Complex
With Atp And Mg+2 From E.Coli
pdb|3K9E|A Chain A, Crystal Structure Of A Putative Ribokinase Ii (Apo Form)
From E.Coli
pdb|3K9E|B Chain B, Crystal Structure Of A Putative Ribokinase Ii (Apo Form)
From E.Coli
Length = 330
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 110/234 (47%), Gaps = 11/234 (4%)
Query: 6 LKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGS 65
L + VD G+ T AFVT G+R+F+F +A L +D+N++K +
Sbjct: 73 LAADGVDIRGISVLPLEATGSAFVTYHNSGDRDFIFNIKNAACGKLSAQHVDENILKDCT 132
Query: 66 IFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQA 125
FH SL + A+ + K +G ++S+DPN+R E R+ + + +
Sbjct: 133 HFHIXGSSLFSFHXVDAVKKAVTIVKANGGVISFDPNIRKEXLDIPE-XRDALHFVLELT 191
Query: 126 DIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFKGRVPGV 185
DI S+ E+ L+ H+ + +K +IV G++G YY+ + V
Sbjct: 192 DIYXPSEGEVLLLS---PHSTPERAIAGFLEEGVKEVIVKRGNQGASYYSANEQFHVESY 248
Query: 186 KTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERG 239
+ VD TGAGD F + C + L D +R AL +ANACGAL VT RG
Sbjct: 249 PVEEVDPTGAGDCFGGAWIAC----RQLGFDAHR---ALQYANACGALAVTRRG 295
>pdb|3EWM|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
pdb|3EWM|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
Length = 313
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 120/251 (47%), Gaps = 27/251 (10%)
Query: 6 LKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGS 65
L + NVDT G+ D T + FV L+ FL + A ++++ +++++
Sbjct: 69 LSKENVDTRGIVKDEKKHTGIVFVQLKG-ASPSFLLY-DDVAYFNXTLNDINWDIVEEAK 126
Query: 66 IFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQ- 124
I ++GS+ L P R T + K S S++++D NLRL LW +E E + + ++
Sbjct: 127 IVNFGSVILARNPSRETVXKVIKKIKGS-SLIAFDVNLRLDLWRGQE---EEXIKVLEES 182
Query: 125 ---ADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFKGR 181
ADI+K S++E+ +L +N +E L +T G KGCR E
Sbjct: 183 IKLADIVKASEEEVLYL--------ENQGVE---VKGSXLTAITLGPKGCRLIKNETVVD 231
Query: 182 VPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGAI 241
VP +DTTGAGD+F + +L + + L + FAN AL+ +RGA
Sbjct: 232 VPSYNVNPLDTTGAGDAFXAALLVGILKLKG-----LDLLKLGKFANLVAALSTQKRGAW 286
Query: 242 PALPTKEAALK 252
+ P K+ LK
Sbjct: 287 -STPRKDELLK 296
>pdb|2QCV|A Chain A, Crystal Structure Of A Putative
5-Dehydro-2-Deoxygluconokinase (Iolc) From Bacillus
Halodurans C-125 At 1.90 A Resolution
Length = 332
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 113/240 (47%), Gaps = 9/240 (3%)
Query: 11 VDTSGVRYDSTA-RTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHY 69
VDTS + D +T LAF +++ E L +R AD+ L E+++ I++ +
Sbjct: 85 VDTSNLVVDQEGHKTGLAFTEIKSPEECSILXYRQDVADLYLSPEEVNEAYIRRSKLLLV 144
Query: 70 GSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIK 129
+L P R L A+ LAK + + ++ + R W + E + +Q+DI+
Sbjct: 145 SGTALSKSPSREAVLKAIRLAKRNDVKVVFELDYRPYSWETPEETAVYYSLVAEQSDIVI 204
Query: 130 VSDDEITFLTGGDDHNDDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFKG-RVPGVKTK 188
+ +E L + D++ + LF + +L+++ G +G YTK + R KTK
Sbjct: 205 GTREEFDVLENRTEKGDNDETIRYLFKHSPELIVIKHGVEGSFAYTKAGEAYRGYAYKTK 264
Query: 189 AVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGAIPALPTKE 248
+ T GAGDS+ S L L + + + AL + +A ++ V++ + A P+ E
Sbjct: 265 VLKTFGAGDSYASAFLYALISGKG-------IETALKYGSASASIVVSKHSSSDAXPSVE 317
>pdb|3GBU|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|C Chain C, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|D Chain D, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3IH0|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
pdb|3IH0|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
Length = 313
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 119/251 (47%), Gaps = 27/251 (10%)
Query: 6 LKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGS 65
L + NVDT G+ D T + FV L+ FL + A ++++ +++++
Sbjct: 69 LSKENVDTRGIVKDEKKHTGIVFVQLKG-ASPSFLLY-DDVAYFNXTLNDINWDIVEEAK 126
Query: 66 IFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQ- 124
I ++GS+ L P R T + K S S++++D NLRL LW +E E + + ++
Sbjct: 127 IVNFGSVILARNPSRETVXKVIKKIKGS-SLIAFDVNLRLDLWRGQE---EEXIKVLEES 182
Query: 125 ---ADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFKGR 181
ADI+K S++E+ +L +N +E L +T G KG R E
Sbjct: 183 IKLADIVKASEEEVLYL--------ENQGVE---VKGSXLTAITLGPKGFRLIKNETVVD 231
Query: 182 VPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGAI 241
VP +DTTGAGD+F + +L + + L + FAN AL+ +RGA
Sbjct: 232 VPSYNVNPLDTTGAGDAFXAALLVGILKLKG-----LDLLKLGKFANLVAALSTQKRGAW 286
Query: 242 PALPTKEAALK 252
+ P K+ LK
Sbjct: 287 -STPRKDELLK 296
>pdb|2V78|A Chain A, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2V78|B Chain B, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2V78|C Chain C, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2VAR|A Chain A, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
pdb|2VAR|B Chain B, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
pdb|2VAR|C Chain C, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
Length = 313
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 110/255 (43%), Gaps = 21/255 (8%)
Query: 7 KENNVDTSGVRYDSTARTALAFVT--LRADGEREFLFFRHPSADMLLCESELDKNLIKQG 64
+ +DTS ++ D+ + T + F+ + E +++R SA L ++++N ++
Sbjct: 70 RAQGIDTSHIKVDNESFTGIYFIQRGYPIPMKSELVYYRKGSAGSRLSPEDINENYVRNS 129
Query: 65 SIFHYGSISL-IAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWD 123
+ H I+L I++ + + A LAK S D N+R LW S E A+E I+SI
Sbjct: 130 RLVHSTGITLAISDNAKEAVIKAFELAKSR----SLDTNIRPKLWSSLEKAKETILSILK 185
Query: 124 QADI---IKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFKG 180
+ DI I DD L D D + K +K+L+ GSKG Y K
Sbjct: 186 KYDIEVLITDPDDTKILL----DVTDPDEAYRKYKELGVKVLLYKLGSKGAIAYKDNVKA 241
Query: 181 RVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGA 240
K D TGAGD+ ++ ++ + +L A L +T RG
Sbjct: 242 FKDAYKVPVEDPTGAGDAMAGTFVSLYLQGKD-------IEYSLAHGIAASTLVITVRGD 294
Query: 241 IPALPTKEAALKLLH 255
PT E A + L+
Sbjct: 295 NELTPTLEDAERFLN 309
>pdb|2DCN|A Chain A, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|B Chain B, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|C Chain C, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|D Chain D, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|E Chain E, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|F Chain F, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|G Chain G, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|H Chain H, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|I Chain I, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|J Chain J, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|K Chain K, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|L Chain L, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|1WYE|A Chain A, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|B Chain B, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|C Chain C, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|D Chain D, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|E Chain E, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|F Chain F, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
Length = 311
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 106/245 (43%), Gaps = 19/245 (7%)
Query: 6 LKENNVDTSGVRYDSTARTALAFVTLR--ADGEREFLFFRHPSADMLLCESELDKNLIKQ 63
L+ VD S ++ D +A T + F+ + E +++R SA L ++D+ +K
Sbjct: 69 LRGQGVDVSHMKIDPSAPTGIFFIQRHYPVPLKSESIYYRKGSAGSKLSPEDVDEEYVKS 128
Query: 64 GSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAARE--GIMSI 121
+ H I+L ST A+ A E S S+D N+RL LW +EEA RE ++S
Sbjct: 129 ADLVHSSGITL---AISSTAKEAVYKAFEIASNRSFDTNIRLKLWSAEEAKREILKLLSK 185
Query: 122 WDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFKGR 181
+ +I +DD L G+ D K F +++++ G KG Y K
Sbjct: 186 FHLKFLITDTDDSKIIL--GESDPDKAA---KAFSDYAEIIVMKLGPKGAIVYYDGKKYY 240
Query: 182 VPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGAI 241
G + D TGAGD+ L +L + +AL +A L V RG
Sbjct: 241 SSGYQVPVEDVTGAGDALGGTFL-------SLYYKGFEMEKALDYAIVASTLNVMIRGDQ 293
Query: 242 PALPT 246
LPT
Sbjct: 294 ENLPT 298
>pdb|4DU5|A Chain A, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|B Chain B, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|C Chain C, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|D Chain D, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
Length = 336
Score = 70.5 bits (171), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 106/243 (43%), Gaps = 17/243 (6%)
Query: 10 NVDTSGVRYDSTARTALAFVTLRADG-EREFLFFRHPSADMLLCESELDKNLIKQGSIFH 68
+D S V D+T +T F DG + + R SA +++D+ + H
Sbjct: 98 GIDCSHVVCDATQKTGFQFKGKVTDGSDPPVEYHRKGSAASHXGVADIDEAWLLSARHLH 157
Query: 69 -YGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADI 127
G I+ +L + +G +S+DPNLR LW + E R+ I + +AD
Sbjct: 158 ATGVFPAISATTLPAARKTXDLXRAAGRSVSFDPNLRPTLWATPELXRDAINDLATRADW 217
Query: 128 IKVSDDEITFLTGGDDHNDDNVVLEKLFHPNL--KLLIVTEGSKGCRYYTKEFKGRVPGV 185
+ +E FLTG + + V F+ L KL++V G++G + + GRV G
Sbjct: 218 VLPGXEEGRFLTG--ETTPEGVA---RFYRQLGAKLVVVKLGAEGAYFDGEAGSGRVAGF 272
Query: 186 KT-KAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGAIPAL 244
+ VDT GAGD F G+++ L D + EA+ GA V G L
Sbjct: 273 PVAEVVDTVGAGDGFAVGVISALL-------DGLGVPEAVKRGAWIGARAVQVLGDSEGL 325
Query: 245 PTK 247
PT+
Sbjct: 326 PTR 328
>pdb|4E69|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus, Unliganded Structure
pdb|4E69|B Chain B, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus, Unliganded Structure
pdb|4EBU|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502312)
From Oceanicola Granulosus, With Bound AmpADP CRYSTAL
FORM I
pdb|4EUM|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus With Bound Amp, Crystal Form
Ii
pdb|4EUM|B Chain B, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus With Bound Amp, Crystal Form
Ii
Length = 328
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 99/213 (46%), Gaps = 10/213 (4%)
Query: 6 LKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADM-LLCESELDKNLIKQG 64
+ +D G+R L +TL GER F ++R SA L +++ + +
Sbjct: 88 MSAAGIDGGGLRVIPGRTVGLYLITLE-QGERSFAYWRGQSAARELAGDADALAAAMARA 146
Query: 65 SIFHYGSISL-IAEPC-RSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIW 122
+ ++ I+L I + C R+T L A+ A+ +G +++DPNLR LW E IM
Sbjct: 147 DVVYFSGITLAILDQCGRATLLRALAQARATGRTIAFDPNLRPRLWAGTGEMTETIMQGA 206
Query: 123 DQADIIKVS-DDEITFLTGGDDHNDDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFKGR 181
+DI S +DE + GD D ++ ++ ++V G + +GR
Sbjct: 207 AVSDIALPSFEDEAAWF--GDAGPD--ATADRYARAGVRSVVVKNGPHAVHFLQDGRRGR 262
Query: 182 -VPGVKTKAVDTTGAGDSFVSGILNCLAADQNL 213
+ VDTT AGDSF +G+L+ + A Q L
Sbjct: 263 VPVPPVAQVVDTTAAGDSFNAGLLDSVLAGQPL 295
>pdb|3LHX|A Chain A, Crystal Structure Of A Ketodeoxygluconokinase (Kdgk) From
Shigella Flexneri
pdb|3LHX|B Chain B, Crystal Structure Of A Ketodeoxygluconokinase (Kdgk) From
Shigella Flexneri
Length = 319
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 92/204 (45%), Gaps = 12/204 (5%)
Query: 10 NVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHY 69
NVDTS + L ++ + GER F ++R+ +A SE + ++ + F Y
Sbjct: 73 NVDTSLTQRXENRLPGLYYIETDSTGERTFYYWRNEAAAKFWLASEQSAAICEELANFDY 132
Query: 70 -----GSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQ 124
S+++++ R L+ + + G + +D N R LW S+E ++ +
Sbjct: 133 LYLSGISLAILSPTSREKLLSLLRECRAKGGKVIFDNNYRPRLWASKEETQQVYQQXLEC 192
Query: 125 ADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLKLLIVTEGSKGCRY-YTKEFKGRVP 183
DI ++ D+ L G D V+ + + +K ++V G+ C E VP
Sbjct: 193 TDIAFLTLDDEDALWGQQPVED---VIARTHNAGVKEVVVKRGADSCLVSIAGEALVDVP 249
Query: 184 GVK---TKAVDTTGAGDSFVSGIL 204
VK K +DTT AGDSF +G L
Sbjct: 250 AVKLPKEKVIDTTAAGDSFSAGYL 273
>pdb|1V19|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V19|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V1A|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1A|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1B|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1S|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|E Chain E, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|F Chain F, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
Length = 309
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 98/249 (39%), Gaps = 18/249 (7%)
Query: 1 MLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNL 60
M+ L+ VD + R + T L G+ ++R SA L D +
Sbjct: 64 MVEERLRAEGVDLTHFR-RAPGFTGLYLREYLPLGQGRVFYYRKGSAGSALAPGAFDPDY 122
Query: 61 IKQGSIFHYGSISLIAEP-CRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIM 119
++ H I+ P R+ L AM AK G +S D N R LW EE AR +
Sbjct: 123 LEGVRFLHLSGITPALSPEARAFSLWAMEEAKRRGVRVSLDVNYRQTLWSPEE-ARGFLE 181
Query: 120 SIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFK 179
D++ +S++E L G + L L P +++ G+KG + +
Sbjct: 182 RALPGVDLLFLSEEEAELLFGRVEE-----ALRALSAPE---VVLKRGAKGAWAFVDGRR 233
Query: 180 GRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERG 239
+AVD GAGD+F +G LA + E RLR AN GA RG
Sbjct: 234 VEGSAFAVEAVDPVGAGDAFAAG---YLAGAVWGLPVEERLR----LANLLGASVAASRG 286
Query: 240 AIPALPTKE 248
P +E
Sbjct: 287 DHEGAPYRE 295
>pdb|3RY7|A Chain A, Crystal Sructure Of Sa239
Length = 304
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 112/244 (45%), Gaps = 27/244 (11%)
Query: 6 LKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGS 65
K ++DTS + + A+T AF+T+ A+G+ + + A+M + ++ + + +
Sbjct: 76 FKVAHIDTSYIIKTAEAKTGQAFITVNAEGQN--TIYVYGGANMTMTPEDV---INAKDA 130
Query: 66 IFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQA 125
I + + E ++A +AK G +P P++ E ++S+ D
Sbjct: 131 IINADFVVAQLEVPIPAIISAFEIAKAHGVTTVLNP------APAKALPNE-LLSLID-- 181
Query: 126 DIIKVSDDEITFLTGGDDHND----DNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFKGR 181
II ++ E L+G N+ DN +K +++T G +G + TK
Sbjct: 182 -IIVPNETEAELLSGIKVTNEQSMKDNA--NYFLSIGIKTVLITLGKQGTYFATKNQSQH 238
Query: 182 VPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGAI 241
+ K A+DTT AGD+F+ ++ L K ++ L +A+ F N +LTV + GA
Sbjct: 239 IEAYKVNAIDTTAAGDTFIGAFVSRLN------KSQDNLADAIDFGNKASSLTVQKHGAQ 292
Query: 242 PALP 245
++P
Sbjct: 293 ASIP 296
>pdb|1RK2|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|B Chain B, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|C Chain C, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|D Chain D, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RKA|A Chain A, The Apo Form Of E. Coli Ribokinase
pdb|1RKS|A Chain A, E. Coli Ribokinase In Complex With D-Ribose
pdb|1GQT|A Chain A, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|B Chain B, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|C Chain C, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|D Chain D, Activation Of Ribokinase By Monovalent Cations
pdb|1RKD|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp
Length = 309
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 116/245 (47%), Gaps = 24/245 (9%)
Query: 6 LKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGS 65
L +N+D + V T +A + + +GE E + H A+ L + ++ ++
Sbjct: 77 LATDNIDITPVSVIKGESTGVALIFV--NGEGENVIGIHAGANAALSPALVEA---QRER 131
Query: 66 IFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQA 125
I + ++ + E + +AA +A ++ +I++ +P ARE +
Sbjct: 132 IANASALLMQLESPLESVMAAAKIAHQNKTIVALNP----------APARELPDELLALV 181
Query: 126 DIIKVSDDEITFLTGGDDHNDDNVV--LEKLFHPNLKLLIVTEGSKGCRYYTKEFKGRVP 183
DII ++ E LTG ND++ + L ++ +++T GS+G RVP
Sbjct: 182 DIITPNETEAEKLTGIRVENDEDAAKAAQVLHEKGIRTVLITLGSRGVWASVNGEGQRVP 241
Query: 184 GVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGAIPA 243
G + +AVDT AGD+F ++ L +E L EA+ FA+A A+ VT +GA P+
Sbjct: 242 GFRVQAVDTIAAGDTFNGALITALL-------EEKPLPEAIRFAHAAAAIAVTRKGAQPS 294
Query: 244 LPTKE 248
+P +E
Sbjct: 295 VPWRE 299
>pdb|3PL2|A Chain A, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|B Chain B, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|C Chain C, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|D Chain D, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
Length = 319
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 99/245 (40%), Gaps = 14/245 (5%)
Query: 6 LKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCES-ELDKNLIKQG 64
L+ VD V D T +T + F + + F+R P A L ES ++ + +++
Sbjct: 77 LERLGVDNQYVATDQTFKTPVTFCEIFPPDDFPLYFYREPKAPDLNIESADVSLDDVREA 136
Query: 65 SIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPS-EEAAREGIMSIWD 123
I + EP R T + + +D + R W S EEA ++ ++
Sbjct: 137 DILWFTLTGFSEEPSRGTHREILTTRANRRHTI-FDLDYRPXFWESPEEATKQAEWAL-- 193
Query: 124 QADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFKGRVP 183
Q + V + E + G+ + L ++L IV +G KG TK+ VP
Sbjct: 194 QHSTVAVGNKEECEIAVGE--TEPERAGRALLERGVELAIVKQGPKGVXAXTKDETVEVP 251
Query: 184 GVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGAIPA 243
++ GAGD+F + + L ++ L K L FAN GAL + A
Sbjct: 252 PFFVDVINGLGAGDAFGGALCHGLLSEWPLEK-------VLRFANTAGALVASRLECSTA 304
Query: 244 LPTKE 248
PT +
Sbjct: 305 XPTTD 309
>pdb|1VM7|A Chain A, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga
Maritima At 2.15 A Resolution
pdb|1VM7|B Chain B, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga
Maritima At 2.15 A Resolution
Length = 311
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 99/231 (42%), Gaps = 37/231 (16%)
Query: 24 TALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAE-PCRST 82
T AF+ + G+ + F P A+ +EL K LI ++ + L E P +T
Sbjct: 103 TGRAFIEVDKTGQNRIIIF--PGAN-----AELKKELIDWNTLSESDILLLQNEIPFETT 155
Query: 83 QLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGI-MSIWDQADIIKVSDDEITFLTGG 141
+ AK I+ +DP A +GI I+ D + ++ EI L+
Sbjct: 156 ----LECAKRFNGIVIFDP-----------APAQGINEEIFQYLDYLTPNEKEIEALS-- 198
Query: 142 DDHNDDNVVLEKLFHPNLKL----LIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGD 197
D + + +EK L+L +IV G KG K K P K KAVDTT AGD
Sbjct: 199 KDFFGEFLTVEKAAEKFLELGVKNVIVKLGDKGVLLVNKNEKKHFPTFKVKAVDTTAAGD 258
Query: 198 SFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGAIPALPTKE 248
F L+ +N EA++F A A++VT GA ++P +E
Sbjct: 259 VFNGAFAVALSEGKN-------PEEAVIFGTAAAAISVTRLGAQSSIPARE 302
>pdb|3H49|A Chain A, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3H49|B Chain B, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3IN1|A Chain A, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
pdb|3IN1|B Chain B, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
Length = 325
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 106/251 (42%), Gaps = 21/251 (8%)
Query: 7 KENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSI 66
++ N+D ++ D + T++ + DGER F+ R+ S L + ++D Q +
Sbjct: 80 RKENIDIQSLKQDVSIDTSINVGLVTEDGERTFVTNRNGSLWKLNID-DVDFARFSQAKL 138
Query: 67 FHYGSI--SLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQ 124
SI S + + T++ AK I+ D + P + I
Sbjct: 139 LSLASIFNSPLLDGKALTEI--FTQAKARQXIICADX-----IKPRLNETLDDICEALSY 191
Query: 125 ADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFKGRVPG 184
D + + E LTG + ++ + + +K +++ G GC + +VP
Sbjct: 192 VDYLFPNFAEAKLLTGKETLDE---IADCFLACGVKTVVIKTGKDGCFIKRGDXTXKVPA 248
Query: 185 VK-TKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGAIPA 243
V A+DT GAGD+F SG + L +N LRE FANA A++V GA
Sbjct: 249 VAGITAIDTIGAGDNFASGFIAALLEGKN-------LRECARFANATAAISVLSVGATTG 301
Query: 244 LPTKEAALKLL 254
+ ++ +LL
Sbjct: 302 VKNRKLVEQLL 312
>pdb|2C49|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
pdb|2C49|B Chain B, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
pdb|2C4E|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
Length = 302
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 19/161 (11%)
Query: 95 SILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKL 154
+++S+DP LP + ++E ++ I + + + ++ E + + D+ LE++
Sbjct: 155 NLVSFDPGQDLPQY-----SKEMLLEIIEHTNFLFMNKHEFERASNLLNFEIDDY-LERV 208
Query: 155 FHPNLKLLIVTEGSKGCRYYTKEFKGRVPGVKT-KAVDTTGAGDSFVSGILNCLAADQNL 213
LIVT+GSKG YTK+ K +P +K K +D TGAGDS+ +G L+ +L
Sbjct: 209 -----DALIVTKGSKGSVIYTKDKKIEIPCIKAGKVIDPTGAGDSYRAGFLSAYVKGYDL 263
Query: 214 IKDENRLREALLFANACGALTVTERGAIPALPTKEAALKLL 254
K L A + V +G LPT + ++ L
Sbjct: 264 EK-------CGLIGAATASFVVEAKGCQTNLPTWDKVVERL 297
>pdb|2FV7|A Chain A, Crystal Structure Of Human Ribokinase
pdb|2FV7|B Chain B, Crystal Structure Of Human Ribokinase
Length = 331
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 110/253 (43%), Gaps = 35/253 (13%)
Query: 6 LKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDK--NLIKQ 63
LK+N++ T A T A + + +G+ + A++LL +L N+I +
Sbjct: 97 LKQNDISTEFTYQTKDAATGTASIIVNNEGQNIIVIVA--GANLLLNTEDLRAAANVISR 154
Query: 64 GSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLP-LWPSEEAAREGIMSIW 122
+ + E +T L A+ +A+ SG ++P + L P +
Sbjct: 155 AKV-----MVCQLEITPATSLEALTMARRSGVKTLFNPAPAIADLDPQ----------FY 199
Query: 123 DQADIIKVSDDEITFLTG-----GDDHNDDNVVLEKLFHPNLKLLIVTEGSKGCRYY--T 175
+D+ ++ E LTG D + +VL K +++I+T G++GC T
Sbjct: 200 TLSDVFCCNESEAEILTGLTVGSAADAGEAALVLLKR---GCQVVIITLGAEGCVVLSQT 256
Query: 176 KEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTV 235
+ +P K KAVDTTGAGDSFV + LA NL L + L +N A++V
Sbjct: 257 EPEPKHIPTEKVKAVDTTGAGDSFVGALAFYLAYYPNL-----SLEDMLNRSNFIAAVSV 311
Query: 236 TERGAIPALPTKE 248
G + P K+
Sbjct: 312 QAAGTQSSYPYKK 324
>pdb|2QHP|A Chain A, Crystal Structure Of Fructokinase (Np_810670.1) From
Bacteroides Thetaiotaomicron Vpi-5482 At 1.80 A
Resolution
Length = 296
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 81/184 (44%), Gaps = 20/184 (10%)
Query: 69 YGSISLIAEPCRSTQLAAMNLAKE-SGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADI 127
+GS++ E R+T ++ + G + +D NLR + ++E RE + + +I
Sbjct: 120 FGSLAQRNEVSRATINRFLDTXPDIDGQLKIFDINLRQDFY-TKEVLRES----FKRCNI 174
Query: 128 IKVSDDEIT-----FLTGGDDHNDDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFKGRV 182
+K++D+E+ F G D D +L L NLK LI+T G G +T
Sbjct: 175 LKINDEELVTISRXFGYPGIDLQDKCWIL--LAKYNLKXLILTCGINGSYVFTPGVVSFQ 232
Query: 183 PGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGAIP 242
K DT GAGDSF + C + I + + EA A A T+ GA P
Sbjct: 233 ETPKVPVADTVGAGDSFTAAF--CAS-----ILNGKSVPEAHKLAVEVSAYVCTQSGAXP 285
Query: 243 ALPT 246
LP
Sbjct: 286 ELPV 289
>pdb|3KD6|A Chain A, Crystal Structure Of Nucleoside Kinase From Chlorobium
Tepidum In Complex With Amp
pdb|3KD6|B Chain B, Crystal Structure Of Nucleoside Kinase From Chlorobium
Tepidum In Complex With Amp
Length = 313
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 10/131 (7%)
Query: 112 EAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVV--LEKLFHPNLKLLIVTEGSK 169
E E + + + D+ V+D E L+G D N+V + K LI+ +G
Sbjct: 156 EGKPEELKKVLARVDVFIVNDSEARLLSG-----DPNLVKTARIIREXGPKTLIIKKGEH 210
Query: 170 GCRYYTKEFKGRVPGVKTKAV-DTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFAN 228
G +T P +++ D TGAGD+F G + LA N E R+A+L+ +
Sbjct: 211 GALLFTDNGIFAAPAFPLESIYDPTGAGDTFAGGFIGHLARCGN--TSEAEXRKAVLYGS 268
Query: 229 ACGALTVTERG 239
A + V + G
Sbjct: 269 AXASFCVEQFG 279
>pdb|3B1R|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|C Chain C, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|D Chain D, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|E Chain E, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|F Chain F, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
Length = 320
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 66/157 (42%), Gaps = 19/157 (12%)
Query: 92 ESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVL 151
++G +DP LPL+ R SI + A I V+D E + ++D +
Sbjct: 166 QAGVPFIFDPGQGLPLFDGATLRR----SI-ELATYIAVNDYEAKLVCDKTGWSEDEIA- 219
Query: 152 EKLFHPNLKLLIVTEGSKGCRYYTKEFKGRVPGVKT-KAVDTTGAGDSFVSGILNCLAAD 210
++ LI+T G G ++ ++P V+ + +D TG GD+F G+L
Sbjct: 220 -----SRVQALIITRGEHGATIRHRDGTEQIPAVRAERVIDPTGCGDAFRGGLLYG---- 270
Query: 211 QNLIKDENRLREALLFANACGALTVTERGAIPALPTK 247
I+ A A+ GAL + +G PT+
Sbjct: 271 ---IEHGFDWATAGRLASLMGALKIAHQGPQTYAPTR 304
>pdb|3B1N|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Mizoribine
pdb|3B1N|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Mizoribine
pdb|3B1O|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Ligand-Free Form
pdb|3B1O|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Ligand-Free Form
pdb|3B1P|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Inosine
pdb|3B1Q|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|C Chain C, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|D Chain D, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|E Chain E, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|F Chain F, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
Length = 326
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 66/157 (42%), Gaps = 19/157 (12%)
Query: 92 ESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVL 151
++G +DP LPL+ R SI + A I V+D E + ++D +
Sbjct: 158 QAGVPFIFDPGQGLPLFDGATLRR----SI-ELATYIAVNDYEAKLVCDKTGWSEDEIA- 211
Query: 152 EKLFHPNLKLLIVTEGSKGCRYYTKEFKGRVPGVKT-KAVDTTGAGDSFVSGILNCLAAD 210
++ LI+T G G ++ ++P V+ + +D TG GD+F G+L
Sbjct: 212 -----SRVQALIITRGEHGATIRHRDGTEQIPAVRAERVIDPTGCGDAFRGGLLYG---- 262
Query: 211 QNLIKDENRLREALLFANACGALTVTERGAIPALPTK 247
I+ A A+ GAL + +G PT+
Sbjct: 263 ---IEHGFDWATAGRLASLMGALKIAHQGPQTYAPTR 296
>pdb|3I3Y|A Chain A, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|B Chain B, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|C Chain C, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|D Chain D, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3IKH|A Chain A, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|B Chain B, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|C Chain C, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|D Chain D, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
Length = 299
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 153 KLFHP-NLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSF 199
+L P +K L++T+G+ G + + P V +A+DTTGAGD+F
Sbjct: 189 ELLQPYGVKTLVITQGAAGAWLVQEGQRQFCPAVPAEALDTTGAGDTF 236
>pdb|3GO6|A Chain A, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose And Amp-Pnp
pdb|3GO6|B Chain B, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose And Amp-Pnp
pdb|3GO7|A Chain A, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose
pdb|3GO7|B Chain B, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose
Length = 310
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 162 LIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAAD--QNLIKDENR 219
++T G +G RY + VP VDT GAGD F +G+ LAA+ +N R
Sbjct: 213 FVITLGVRGARYVGADGVFEVPAPTVTPVDTAGAGDVF-AGV---LAANWPRNPGSPAER 268
Query: 220 LREALLFANACGALTVTERG 239
LR AL A A GAL G
Sbjct: 269 LR-ALRRACAAGALATLVSG 287
>pdb|4GM6|A Chain A, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|B Chain B, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|C Chain C, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|D Chain D, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|E Chain E, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|F Chain F, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
Length = 351
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 85/222 (38%), Gaps = 28/222 (12%)
Query: 41 FFRHPSADMLLCESELDKNLIKQGSIFHYGSISL-IAEPCRSTQLAAMNLAKESGSILSY 99
F RH S D L E L+K + H I++ ++ + + AK +G +S+
Sbjct: 134 FARHKSMDWDLSE------LLKGIRVLHVSGITIALSTFWLEMVVKIIREAKRNGIKISF 187
Query: 100 DPNLRLPLWPSEEAAR--EGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHP 157
D N R LW E A R + ++ + D ++ D + F + D + + P
Sbjct: 188 DMNYRAKLWELEAAKRAYQQLLPLVDYCSAGQM--DAVAFFEISSETTDYYQAMHDKY-P 244
Query: 158 NLKLLIVTEGS---------KGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLA 208
N++L T+ + +G + E VD G GD++ + +L+
Sbjct: 245 NIELFYATKRTVISASHHLLQGHLWTQGECWESEEYAIYPIVDRVGGGDAYTAAVLHG-- 302
Query: 209 ADQNLIKDENRLREALLFANACGALTVTERGAIPALPTKEAA 250
I E R E + FA A L + G I K A
Sbjct: 303 -----ILSEWRPDETVKFATAAAGLKHSIHGDINPFDEKTIA 339
>pdb|2JG5|A Chain A, Crystal Structure Of A Putative Phosphofructokinase From
Staphylococcus Aureus
pdb|2JG5|B Chain B, Crystal Structure Of A Putative Phosphofructokinase From
Staphylococcus Aureus
Length = 306
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 128 IKVSDDEITFLTGGDDHNDDNVVL--EKLFHPNLKLLIVTEGSKGCRYYTKEFKGRVPGV 185
IK + DE+ + ++D +V+ L + +IV+ G G Y KE +
Sbjct: 178 IKPNKDELEVMFNTTVNSDADVIKYGRLLVDKGAQSVIVSLGGDGAIYIDKEISIKAVNP 237
Query: 186 KTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALT 234
+ K V+T G+GDS V+G++ +A+ ++ E ++A+ ACG T
Sbjct: 238 QGKVVNTVGSGDSTVAGMVAGIASGLSI---EKAFQQAV----ACGTAT 279
>pdb|3KTN|A Chain A, Crystal Structure Of A Putative 2-Keto-3-Deoxygluconate
Kinase From Enterococcus Faecalis
Length = 346
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 190 VDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGAIPALPTKEA 249
+D GAGD++ +GIL + + +L K A+ FA G L T +G IP K+
Sbjct: 273 LDRIGAGDAYAAGILYGYSQNWSLEK-------AVTFATVNGVLAHTIQGDIPLTTVKQV 325
Query: 250 ALKLLH 255
L H
Sbjct: 326 NHVLEH 331
>pdb|1SZR|C Chain C, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
pdb|1SZR|D Chain D, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
pdb|1SZR|A Chain A, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
pdb|1SZR|B Chain B, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
Length = 425
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 48/130 (36%), Gaps = 29/130 (22%)
Query: 148 NVVLEKLFHPNLKLLIVTEGSKGCRYYTKE---------FKGRVPGVKTK-AVDTTGAGD 197
N LEK F P+LKL IV E RYY K PGV+T
Sbjct: 256 NNALEKHFPPDLKLTIVAEPG---RYYVASAFTLAVNVIAKAVTPGVQTDVGAHAESNAQ 312
Query: 198 SF-------VSGILNCLAADQNLIK--------DENRLREALLFANACGAL-TVTERGAI 241
SF V G NC+ D +++ +L + ++ C L + ER +
Sbjct: 313 SFMYYVNDGVYGSFNCILYDHAVVRPLPQREPIPNEKLYPSSVWGPTCDGLDQIVERYYL 372
Query: 242 PALPTKEAAL 251
P + E L
Sbjct: 373 PEMQVGEWLL 382
>pdb|2ABS|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With Amp-Pcp
pdb|2A9Y|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine
pdb|2A9Z|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine And Amp-Pcp
pdb|2AA0|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside
pdb|2AB8|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside And Amp-Pcp
Length = 383
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 7/43 (16%)
Query: 188 KAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANAC 230
K VDT GAGD+FV G L L+ + +++ ++ NAC
Sbjct: 329 KIVDTNGAGDAFVGGFLYALSQGKT-------VKQCIMCGNAC 364
>pdb|1DGM|A Chain A, Crystal Structure Of Adenosine Kinase From Toxoplasma
Gondii
Length = 363
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 7/43 (16%)
Query: 188 KAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANAC 230
K VDT GAGD+FV G L L+ + +++ ++ NAC
Sbjct: 309 KIVDTNGAGDAFVGGFLYALSQGKT-------VKQCIMCGNAC 344
>pdb|1NJJ|A Chain A, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|B Chain B, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|C Chain C, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|D Chain D, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
Length = 425
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 48/130 (36%), Gaps = 29/130 (22%)
Query: 148 NVVLEKLFHPNLKLLIVTEGSKGCRYYTKE---------FKGRVPGVKTK-AVDTTGAGD 197
N LEK F P+LKL IV E RYY K PGV+T
Sbjct: 256 NNALEKHFPPDLKLTIVAEPG---RYYVASAFTLAVNVIAKKVTPGVQTDVGAHAESNAQ 312
Query: 198 SF-------VSGILNCLAADQNLIK--------DENRLREALLFANACGAL-TVTERGAI 241
SF V G NC+ D +++ +L + ++ C L + ER +
Sbjct: 313 SFMYYVNDGVYGSFNCILYDHAVVRPLPQREPIPNEKLYPSSVWGPTCDGLDQIVERYYL 372
Query: 242 PALPTKEAAL 251
P + E L
Sbjct: 373 PEMQVGEWLL 382
>pdb|2TOD|A Chain A, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|B Chain B, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|C Chain C, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|D Chain D, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
Length = 425
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 48/130 (36%), Gaps = 29/130 (22%)
Query: 148 NVVLEKLFHPNLKLLIVTEGSKGCRYYTKE---------FKGRVPGVKTK-AVDTTGAGD 197
N LEK F P+LKL IV E RYY K PGV+T
Sbjct: 256 NNALEKHFPPDLKLTIVAEPG---RYYVASAFTLAVNVIAKKVTPGVQTDVGAHAESNAQ 312
Query: 198 SF-------VSGILNCLAADQNLIK--------DENRLREALLFANACGAL-TVTERGAI 241
SF V G NC+ D +++ +L + ++ C L + ER +
Sbjct: 313 SFMYYVNDGVYGSFNCILYDHAVVRPLPQREPIPNEKLYPSSVWGPTCDGLDQIVERYYL 372
Query: 242 PALPTKEAAL 251
P + E L
Sbjct: 373 PEMQVGEWLL 382
>pdb|1QU4|A Chain A, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|B Chain B, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|C Chain C, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|D Chain D, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1F3T|A Chain A, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|B Chain B, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|C Chain C, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|D Chain D, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product
Length = 425
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 48/130 (36%), Gaps = 29/130 (22%)
Query: 148 NVVLEKLFHPNLKLLIVTEGSKGCRYYTKE---------FKGRVPGVKTK-AVDTTGAGD 197
N LEK F P+LKL IV E RYY K PGV+T
Sbjct: 256 NNALEKHFPPDLKLTIVAEPG---RYYVASAFTLAVNVIAKKVTPGVQTDVGAHAESNAQ 312
Query: 198 SF-------VSGILNCLAADQNLIK--------DENRLREALLFANACGAL-TVTERGAI 241
SF V G NC+ D +++ +L + ++ C L + ER +
Sbjct: 313 SFMYYVNDGVYGSFNCILYDHAVVRPLPQREPIPNEKLYPSSVWGPTCDGLDQIVERYYL 372
Query: 242 PALPTKEAAL 251
P + E L
Sbjct: 373 PEMQVGEWLL 382
>pdb|1BX4|A Chain A, Structure Of Human Adenosine Kinase At 1.50 Angstroms
pdb|2I6A|A Chain A, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|B Chain B, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|C Chain C, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|D Chain D, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6B|A Chain A, Human Adenosine Kinase In Complex With An Acetylinic
Inhibitor
pdb|2I6B|B Chain B, Human Adenosine Kinase In Complex With An Acetylinic
Inhibitor
Length = 345
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 190 VDTTGAGDSFVSGILNCLAADQNL 213
+DT GAGD+FV G L+ L +D+ L
Sbjct: 293 IDTNGAGDAFVGGFLSQLVSDKPL 316
>pdb|1LII|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
2 And Amp-Pcp
pdb|1LIJ|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Prodrug 2
7-Iodotubercidin And Amp-Pcp
pdb|1LIK|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
Length = 363
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 7/43 (16%)
Query: 188 KAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANAC 230
K VDT GAGD+FV G L L+ + +++ ++ NAC
Sbjct: 309 KIVDTNGAGDAFVGGFLYGLSQGKT-------VKQCIMCGNAC 344
>pdb|1LIO|A Chain A, Structure Of Apo T. Gondii Adenosine Kinase
Length = 363
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 7/43 (16%)
Query: 188 KAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANAC 230
K VDT GAGD+FV G L L+ + +++ ++ NAC
Sbjct: 309 KIVDTNGAGDAFVGGFLYGLSQGKT-------VKQCIMCGNAC 344
>pdb|3BF5|A Chain A, Crystal Structure Of Putative Ribokinase (10640157) From
Thermoplasma Acidophilum At 1.91 A Resolution
pdb|3BF5|B Chain B, Crystal Structure Of Putative Ribokinase (10640157) From
Thermoplasma Acidophilum At 1.91 A Resolution
Length = 306
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 163 IVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIK 215
IVT G +G + K P + + DT GAGDSF +G+ L +++ K
Sbjct: 213 IVTNGERGSSLFXDGKKYDFPAIPSSG-DTVGAGDSFRAGLYLALYNRRSIEK 264
>pdb|2ABQ|A Chain A, Crystal Structure Of Fructose-1-Phosphate Kinase From
Bacillus Halodurans
pdb|2ABQ|B Chain B, Crystal Structure Of Fructose-1-Phosphate Kinase From
Bacillus Halodurans
Length = 306
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 11/86 (12%)
Query: 151 LEKLFHPNLKLLIVTEGSKGCRYYTKE--FKGRVPGVKTKAVDTTGAGDSFVSGILNCLA 208
+++L ++ ++V+ G + + E F VP + + ++ GAGDS V+G L L
Sbjct: 203 VQRLIGEGIESILVSFAGDGALFASAEGXFHVNVPSGEVR--NSVGAGDSVVAGFLAAL- 259
Query: 209 ADQNLIKDENRLREALLFANACGALT 234
++ L +A+ FA A G+ T
Sbjct: 260 ------QEGKSLEDAVPFAVAAGSAT 279
>pdb|4E8W|A Chain A, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8W|B Chain B, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8Y|A Chain A, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8Y|B Chain B, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8Z|A Chain A, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8Z|B Chain B, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
Length = 352
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/82 (20%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 158 NLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDE 217
++ L++T +G ++ + P + + D +GAGD+ ++ + L A L+
Sbjct: 267 DIDALLLTRSEEGMTLFSAGGELHAPALAREVFDVSGAGDTVIATVATMLGAGVPLV--- 323
Query: 218 NRLREALLFANACGALTVTERG 239
+A++ AN + V + G
Sbjct: 324 ----DAVVLANRAAGIVVGKLG 341
>pdb|4E3A|A Chain A, Crystal Structure Of Probable Sugar Kinase Protein From
Rhizobium Etli Cfn 42
pdb|4E3A|B Chain B, Crystal Structure Of Probable Sugar Kinase Protein From
Rhizobium Etli Cfn 42
Length = 352
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Query: 172 RYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGIL 204
RYY + R + VDTTGAGD F SG L
Sbjct: 281 RYYVNAIRIR------EVVDTTGAGDLFASGFL 307
>pdb|2AFB|A Chain A, Crystal Structure Of 2-Dehydro-3- Deoxygluconokinase (Ec
2.7.1.45) (Tm0067) From Thermotoga Maritima At 2.05 A
Resolution
pdb|2AFB|B Chain B, Crystal Structure Of 2-Dehydro-3- Deoxygluconokinase (Ec
2.7.1.45) (Tm0067) From Thermotoga Maritima At 2.05 A
Resolution
Length = 351
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 67 FHYGSISLIAEPCRSTQLA-----AMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSI 121
FH+ I+ P +L A+ +A E G +S D N R LW EEA + I
Sbjct: 142 FHFSGIT----PPLGKELPLILEDALKVANEKGVTVSCDLNYRARLWTKEEAQKVXI-PF 196
Query: 122 WDQADIIKVSDDEITFLTG 140
+ D++ ++++I + G
Sbjct: 197 XEYVDVLIANEEDIEKVLG 215
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|B Chain B, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|C Chain C, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|D Chain D, Crystal Structure Of Aclacinomycin Oxidoreductase
Length = 521
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 12/83 (14%)
Query: 113 AAREGIMSIWDQADIIKVSDD------------EITFLTGGDDHNDDNVVLEKLFHPNLK 160
A R+ I+ +W A + + D EI TGG DD + +P++
Sbjct: 414 AQRDSIIKVWMSATWMDPAHDDANLAWIREIYREIFATTGGVPVPDDRTEGTFINYPDVD 473
Query: 161 LLIVTEGSKGCRYYTKEFKGRVP 183
L+ + G +YT +KG P
Sbjct: 474 LVDERWNTSGVPWYTLYYKGNYP 496
>pdb|4E84|A Chain A, Crystal Structure Of Burkholderia Cenocepacia Hlda
pdb|4E84|B Chain B, Crystal Structure Of Burkholderia Cenocepacia Hlda
Length = 352
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/82 (20%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 158 NLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDE 217
++ L++T +G ++ + P + + D +GAGD+ ++ + L A L+
Sbjct: 267 DIDALLLTRSEEGXTLFSAGGELHAPALAREVFDVSGAGDTVIATVATXLGAGVPLV--- 323
Query: 218 NRLREALLFANACGALTVTERG 239
+A++ AN + V + G
Sbjct: 324 ----DAVVLANRAAGIVVGKLG 341
>pdb|3UQE|A Chain A, Crystal Structure Of The Phosphofructokinase-2 Mutant Y23d
From Escherichia Coli
pdb|3UQE|B Chain B, Crystal Structure Of The Phosphofructokinase-2 Mutant Y23d
From Escherichia Coli
Length = 309
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 29/179 (16%)
Query: 83 QLAAMNLAKESGSIL----SYDPNLRLPLWPS--EEAAREGIMSIWDQA----------- 125
QL L ESG+IL S P ++L A ++GI I D +
Sbjct: 120 QLEEQVLEIESGAILVISGSLPPGVKLEKLTQLISAAQKQGIRCIVDSSGEALSAALAIG 179
Query: 126 --DIIKVSDDEITFLTGGDDHNDDNV---VLEKLFHPNLKLLIVTEGSKGCRYYTKEFKG 180
+++K + E++ L + D+V E + K ++V+ G +G E
Sbjct: 180 NIELVKPNQKELSALVNRELTQPDDVRKAAQEIVNSGKAKRVVVSLGPQGALGVDSENCI 239
Query: 181 RVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERG 239
+V K+ T GAGDS V + LA + + L E + F A G+ +G
Sbjct: 240 QVVPPPVKSQSTVGAGDSMVGAMTLKLAENAS-------LEEMVRFGVAAGSAATLNQG 291
>pdb|1QGX|A Chain A, X-Ray Structure Of Yeast Hal2p
pdb|1K9Y|A Chain A, The Papase Hal2p Complexed With Magnesium Ions And
Reaction Products: Amp And Inorganic Phosphate
pdb|1K9Z|A Chain A, The Papase Hal2p Complexed With Zinc Ions
pdb|1KA0|A Chain A, The Papase Hal2p Complexed With A Sodium Ion And The
Reaction Product Amp
pdb|1KA1|A Chain A, The Papase Hal2p Complexed With Calcium And Magnesium Ions
And Reaction Substrate: Pap
Length = 357
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 192 TTGAGDSFVSGILNCLAADQNLIKDENRLREALLFAN 228
++G D+FVSGILN + A+ + ++N ++ LF N
Sbjct: 75 SSGLSDAFVSGILNEIKANDE-VYNKNYKKDDFLFTN 110
>pdb|3CQD|A Chain A, Structure Of The Tetrameric Inhibited Form Of
Phosphofructokinase-2 From Escherichia Coli
pdb|3CQD|B Chain B, Structure Of The Tetrameric Inhibited Form Of
Phosphofructokinase-2 From Escherichia Coli
pdb|3N1C|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3N1C|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3N1C|C Chain C, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3N1C|D Chain D, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3UMO|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Potassium
pdb|3UMO|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Potassium
pdb|3UMP|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Cesium And Atp
pdb|3UMP|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Cesium And Atp
pdb|3UQD|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
pdb|3UQD|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
pdb|3UQD|C Chain C, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
pdb|3UQD|D Chain D, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
Length = 309
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 29/179 (16%)
Query: 83 QLAAMNLAKESGSIL----SYDPNLRLPLWPS--EEAAREGIMSIWDQA----------- 125
QL L ESG+IL S P ++L A ++GI I D +
Sbjct: 120 QLEEQVLEIESGAILVISGSLPPGVKLEKLTQLISAAQKQGIRCIVDSSGEALSAALAIG 179
Query: 126 --DIIKVSDDEITFLTGGDDHNDDNV---VLEKLFHPNLKLLIVTEGSKGCRYYTKEFKG 180
+++K + E++ L + D+V E + K ++V+ G +G E
Sbjct: 180 NIELVKPNQKELSALVNRELTQPDDVRKAAQEIVNSGKAKRVVVSLGPQGALGVDSENCI 239
Query: 181 RVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERG 239
+V K+ T GAGDS V + LA + + L E + F A G+ +G
Sbjct: 240 QVVPPPVKSQSTVGAGDSMVGAMTLKLAENAS-------LEEMVRFGVAAGSAATLNQG 291
>pdb|2XTB|A Chain A, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Activator
pdb|3OTX|A Chain A, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Inhibitor Ap5a
pdb|3OTX|B Chain B, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Inhibitor Ap5a
Length = 347
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 186 KTKAVDTTGAGDSFVSGILNCLAADQNL 213
+ K +D GAGD+F+ G L+ A ++L
Sbjct: 290 QDKVIDMNGAGDAFMGGFLSAYAVGKDL 317
>pdb|3PZP|A Chain A, Human Dna Polymerase Kappa Extending Opposite A Cis-Syn
Thymine Dimer
pdb|3PZP|B Chain B, Human Dna Polymerase Kappa Extending Opposite A Cis-Syn
Thymine Dimer
Length = 517
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 140 GGDDH---NDDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFK 179
GGD H ND+ +E L + +I+ E +KG R+Y E K
Sbjct: 3 GGDPHMGLNDNKAGMEGLDKEKINKIIM-EATKGSRFYGNELK 44
>pdb|3LOO|A Chain A, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|B Chain B, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|C Chain C, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
Length = 365
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 188 KAVDTTGAGDSFVSGIL 204
+ VDT GAGD+FV G L
Sbjct: 308 QMVDTNGAGDAFVGGFL 324
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,395,872
Number of Sequences: 62578
Number of extensions: 298573
Number of successful extensions: 784
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 712
Number of HSP's gapped (non-prelim): 57
length of query: 260
length of database: 14,973,337
effective HSP length: 97
effective length of query: 163
effective length of database: 8,903,271
effective search space: 1451233173
effective search space used: 1451233173
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)