Query 024908
Match_columns 260
No_of_seqs 140 out of 1457
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 08:22:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024908.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024908hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02323 probable fructokinase 100.0 1.4E-40 3E-45 282.0 28.4 255 1-257 74-328 (330)
2 PLN02967 kinase 100.0 3.4E-39 7.4E-44 283.9 27.1 245 1-253 274-544 (581)
3 PLN02543 pfkB-type carbohydrat 100.0 4.9E-39 1.1E-43 280.4 27.5 249 1-257 203-490 (496)
4 PRK09434 aminoimidazole ribosi 100.0 3E-38 6.6E-43 264.9 24.7 244 1-250 59-303 (304)
5 PLN02813 pfkB-type carbohydrat 100.0 3.7E-37 7.9E-42 267.1 25.6 243 1-257 165-408 (426)
6 cd01167 bac_FRK Fructokinases 100.0 7.8E-37 1.7E-41 255.3 23.8 230 1-241 59-295 (295)
7 PTZ00292 ribokinase; Provision 100.0 6.6E-37 1.4E-41 259.2 23.1 236 1-255 83-325 (326)
8 PRK11142 ribokinase; Provision 100.0 8.2E-37 1.8E-41 256.5 23.4 231 1-255 70-304 (306)
9 cd01166 KdgK 2-keto-3-deoxyglu 100.0 2.4E-36 5.3E-41 252.2 25.7 231 1-240 62-293 (294)
10 PLN02341 pfkB-type carbohydrat 100.0 1.8E-36 3.8E-41 266.3 25.9 247 1-258 150-411 (470)
11 COG0524 RbsK Sugar kinases, ri 100.0 4.2E-36 9E-41 252.7 25.8 240 1-257 68-310 (311)
12 cd01168 adenosine_kinase Adeno 100.0 2.3E-36 5.1E-41 254.3 23.0 225 1-242 86-311 (312)
13 PRK15074 inosine/guanosine kin 100.0 1.9E-35 4.1E-40 255.0 23.0 238 2-249 126-425 (434)
14 cd01174 ribokinase Ribokinase 100.0 3.5E-35 7.6E-40 245.0 23.4 222 1-246 67-292 (292)
15 PLN02379 pfkB-type carbohydrat 100.0 2.8E-35 6.1E-40 251.5 23.2 236 1-255 118-356 (367)
16 cd01944 YegV_kinase_like YegV- 100.0 1.4E-34 3E-39 241.1 23.0 222 1-239 66-289 (289)
17 PTZ00247 adenosine kinase; Pro 100.0 8.2E-35 1.8E-39 248.0 21.8 225 1-242 97-336 (345)
18 PRK09850 pseudouridine kinase; 100.0 2.1E-34 4.5E-39 242.5 22.6 235 1-258 71-310 (313)
19 KOG2855 Ribokinase [Carbohydra 100.0 2.9E-34 6.3E-39 233.0 22.4 249 2-257 78-327 (330)
20 PF00294 PfkB: pfkB family car 100.0 3.5E-35 7.7E-40 245.9 17.3 229 1-246 67-300 (301)
21 TIGR02152 D_ribokin_bact ribok 100.0 3.2E-34 7E-39 239.3 21.4 228 1-251 62-293 (293)
22 cd01945 ribokinase_group_B Rib 100.0 1.5E-33 3.2E-38 234.3 22.4 216 2-246 68-284 (284)
23 COG1105 FruK Fructose-1-phosph 100.0 5E-33 1.1E-37 225.8 23.1 231 1-258 66-305 (310)
24 TIGR03828 pfkB 1-phosphofructo 100.0 3.4E-33 7.5E-38 234.3 23.0 229 2-257 66-302 (304)
25 cd01942 ribokinase_group_A Rib 100.0 7E-33 1.5E-37 229.7 22.3 208 1-240 67-278 (279)
26 PRK13508 tagatose-6-phosphate 100.0 1.1E-32 2.4E-37 231.7 22.5 231 1-258 66-305 (309)
27 PRK10294 6-phosphofructokinase 100.0 1.9E-32 4.1E-37 230.2 23.1 233 1-258 68-308 (309)
28 TIGR03168 1-PFK hexose kinase, 100.0 4.2E-32 9E-37 227.6 24.0 229 2-257 66-302 (303)
29 PLN02548 adenosine kinase 100.0 2.9E-32 6.2E-37 231.3 22.6 225 1-242 86-325 (332)
30 TIGR01231 lacC tagatose-6-phos 100.0 1.8E-32 4E-37 230.3 21.2 235 1-259 65-306 (309)
31 cd01943 MAK32 MAK32 kinase. M 100.0 6.9E-33 1.5E-37 234.0 18.3 223 1-240 61-304 (328)
32 PRK09513 fruK 1-phosphofructok 100.0 1.1E-31 2.4E-36 225.9 23.8 229 3-258 71-307 (312)
33 PRK09954 putative kinase; Prov 100.0 4.4E-32 9.4E-37 232.6 21.2 233 1-256 124-361 (362)
34 cd01940 Fructoselysine_kinase_ 100.0 1.3E-31 2.9E-36 220.3 22.5 211 1-240 53-263 (264)
35 TIGR02198 rfaE_dom_I rfaE bifu 100.0 6.1E-32 1.3E-36 227.8 20.8 229 1-255 78-315 (315)
36 cd01172 RfaE_like RfaE encodes 100.0 6.1E-32 1.3E-36 226.7 20.5 218 1-243 70-297 (304)
37 cd01939 Ketohexokinase Ketohex 100.0 5E-31 1.1E-35 219.7 20.9 213 1-240 67-289 (290)
38 cd01164 FruK_PfkB_like 1-phosp 100.0 1.4E-30 3E-35 217.0 21.4 214 1-240 66-288 (289)
39 cd01947 Guanosine_kinase_like 100.0 2.3E-30 4.9E-35 213.1 21.4 198 2-241 68-265 (265)
40 PRK09813 fructoselysine 6-kina 100.0 4.1E-30 9E-35 210.9 19.6 206 1-240 54-259 (260)
41 cd01941 YeiC_kinase_like YeiC- 100.0 7.2E-30 1.6E-34 212.6 19.5 214 2-237 67-288 (288)
42 PRK11316 bifunctional heptose 100.0 1E-28 2.2E-33 218.9 21.0 228 1-256 81-314 (473)
43 PLN02630 pfkB-type carbohydrat 100.0 4.1E-28 8.8E-33 204.3 22.9 216 10-258 67-293 (335)
44 cd01946 ribokinase_group_C Rib 100.0 4.1E-28 8.9E-33 200.9 18.6 219 2-241 55-276 (277)
45 cd01937 ribokinase_group_D Rib 100.0 1.5E-26 3.1E-31 189.3 19.7 200 3-236 55-254 (254)
46 KOG2854 Possible pfkB family c 99.9 4.9E-27 1.1E-31 188.8 14.5 223 2-241 98-335 (343)
47 COG2870 RfaE ADP-heptose synth 99.9 2.7E-22 5.9E-27 165.1 17.4 224 2-253 82-310 (467)
48 KOG2947 Carbohydrate kinase [C 99.9 3.4E-22 7.5E-27 153.8 15.6 219 1-241 72-299 (308)
49 cd01173 pyridoxal_pyridoxamine 99.9 1.9E-21 4.1E-26 159.1 17.3 167 62-237 71-251 (254)
50 PRK05756 pyridoxamine kinase; 99.9 2.5E-21 5.3E-26 160.9 16.5 168 61-237 72-255 (286)
51 cd00287 ribokinase_pfkB_like r 99.9 3.1E-21 6.7E-26 151.6 14.9 136 64-208 58-196 (196)
52 PRK07105 pyridoxamine kinase; 99.9 7.7E-21 1.7E-25 157.7 17.4 184 63-256 75-278 (284)
53 TIGR00687 pyridox_kin pyridoxa 99.9 9.6E-21 2.1E-25 157.4 16.4 167 61-237 72-256 (286)
54 TIGR00097 HMP-P_kinase phospho 99.9 2.5E-20 5.3E-25 152.3 17.6 162 63-237 67-240 (254)
55 PRK12412 pyridoxal kinase; Rev 99.9 2.7E-20 5.9E-25 153.1 16.9 163 63-237 72-246 (268)
56 PRK12413 phosphomethylpyrimidi 99.9 1.7E-20 3.6E-25 153.3 15.4 149 82-238 84-243 (253)
57 PRK08176 pdxK pyridoxal-pyrido 99.8 6.5E-20 1.4E-24 151.7 17.4 166 62-237 87-266 (281)
58 cd01169 HMPP_kinase 4-amino-5- 99.8 9E-20 2E-24 148.1 17.7 162 63-236 68-240 (242)
59 PRK06427 bifunctional hydroxy- 99.8 1.7E-19 3.7E-24 148.4 17.9 163 63-238 73-249 (266)
60 PRK08573 phosphomethylpyrimidi 99.8 3.2E-19 6.9E-24 156.4 18.0 161 64-237 72-244 (448)
61 PRK12616 pyridoxal kinase; Rev 99.8 1.3E-18 2.8E-23 143.2 17.2 163 63-237 74-249 (270)
62 PTZ00344 pyridoxal kinase; Pro 99.8 7.1E-17 1.5E-21 134.6 17.5 163 63-237 77-258 (296)
63 PLN02898 HMP-P kinase/thiamin- 99.7 1.9E-16 4.2E-21 141.0 17.7 164 63-238 78-254 (502)
64 PTZ00347 phosphomethylpyrimidi 99.7 3.2E-16 6.8E-21 139.8 16.3 160 64-237 300-478 (504)
65 PLN02978 pyridoxal kinase 99.7 7.8E-15 1.7E-19 122.8 20.0 163 64-237 87-267 (308)
66 PRK14713 multifunctional hydro 99.7 2.3E-15 4.9E-20 134.8 15.5 160 63-235 98-270 (530)
67 PF08543 Phos_pyr_kin: Phospho 99.7 2.7E-15 5.8E-20 121.8 14.4 163 63-237 60-234 (246)
68 COG0351 ThiD Hydroxymethylpyri 99.7 7.1E-15 1.5E-19 117.3 15.8 162 63-236 72-244 (263)
69 PRK09517 multifunctional thiam 99.6 6.5E-15 1.4E-19 136.6 15.9 161 63-237 310-484 (755)
70 cd01171 YXKO-related B.subtili 99.6 1.5E-14 3.2E-19 118.3 14.5 159 59-238 73-236 (254)
71 cd01170 THZ_kinase 4-methyl-5- 99.6 4.6E-14 1E-18 114.0 16.3 165 58-236 44-221 (242)
72 COG2240 PdxK Pyridoxal/pyridox 99.6 1.8E-13 3.8E-18 109.9 15.9 167 59-236 69-249 (281)
73 TIGR00196 yjeF_cterm yjeF C-te 99.5 3.9E-13 8.4E-18 110.9 16.1 176 59-257 88-269 (272)
74 PTZ00493 phosphomethylpyrimidi 99.5 5.6E-12 1.2E-16 104.8 16.5 166 63-237 73-285 (321)
75 PRK09355 hydroxyethylthiazole 99.4 5.5E-11 1.2E-15 97.4 16.5 163 59-235 50-224 (263)
76 TIGR00694 thiM hydroxyethylthi 99.3 1.2E-10 2.6E-15 94.7 15.6 162 59-234 45-218 (249)
77 KOG2598 Phosphomethylpyrimidin 99.1 1.5E-09 3.2E-14 91.1 13.7 163 63-236 92-282 (523)
78 KOG2599 Pyridoxal/pyridoxine/p 99.0 8E-09 1.7E-13 81.7 12.4 148 60-211 78-241 (308)
79 KOG3009 Predicted carbohydrate 99.0 3.5E-09 7.5E-14 89.5 9.5 156 63-238 425-601 (614)
80 PF02110 HK: Hydroxyethylthiaz 98.4 5.4E-05 1.2E-09 60.8 17.0 147 59-212 45-203 (246)
81 PRK10565 putative carbohydrate 98.2 5.4E-05 1.2E-09 67.8 14.9 145 61-229 318-467 (508)
82 PF01256 Carb_kinase: Carbohyd 98.1 0.00014 3E-09 58.8 14.0 171 59-255 63-241 (242)
83 COG2145 ThiM Hydroxyethylthiaz 98.1 0.0005 1.1E-08 54.9 16.4 146 60-212 52-209 (265)
84 KOG3974 Predicted sugar kinase 97.6 0.0018 3.9E-08 51.7 11.5 169 58-236 96-266 (306)
85 COG0063 Predicted sugar kinase 97.4 0.017 3.7E-07 47.7 15.7 173 61-256 99-279 (284)
86 PRK03979 ADP-specific phosphof 97.2 0.0071 1.5E-07 53.1 12.2 74 62-139 221-305 (463)
87 PF04587 ADP_PFK_GK: ADP-speci 96.8 0.039 8.4E-07 48.8 13.3 75 61-139 207-291 (444)
88 PRK14039 ADP-dependent glucoki 96.8 0.05 1.1E-06 47.7 13.5 99 63-165 210-330 (453)
89 TIGR02045 P_fruct_ADP ADP-spec 96.7 0.24 5.3E-06 43.5 16.6 148 62-252 208-379 (446)
90 PRK14038 ADP-dependent glucoki 96.4 0.22 4.7E-06 43.8 14.9 146 60-253 221-386 (453)
91 cd01938 ADPGK_ADPPFK ADP-depen 86.9 5.8 0.00013 35.2 9.1 73 63-139 205-285 (445)
92 PRK10076 pyruvate formate lyas 85.3 9.9 0.00021 30.2 8.9 75 80-163 53-132 (213)
93 COG1180 PflA Pyruvate-formate 82.4 19 0.00042 29.5 9.8 90 63-163 83-177 (260)
94 PRK13397 3-deoxy-7-phosphohept 73.3 21 0.00046 29.1 7.3 82 77-169 62-161 (250)
95 PHA00438 hypothetical protein 67.4 4.9 0.00011 25.9 2.0 17 192-208 46-62 (81)
96 TIGR00334 5S_RNA_mat_M5 ribonu 67.2 29 0.00063 26.5 6.4 64 63-136 22-85 (174)
97 COG0269 SgbH 3-hexulose-6-phos 63.0 76 0.0016 25.2 8.5 94 60-167 77-172 (217)
98 PF10911 DUF2717: Protein of u 61.6 7.1 0.00015 25.1 1.9 19 191-209 45-63 (77)
99 KOG4184 Predicted sugar kinase 57.2 19 0.00042 30.7 4.2 75 62-140 237-317 (478)
100 COG1646 Predicted phosphate-bi 56.7 51 0.0011 26.5 6.3 65 59-140 37-106 (240)
101 COG1922 WecG Teichoic acid bio 55.9 43 0.00092 27.4 5.9 100 58-168 59-171 (253)
102 PRK14039 ADP-dependent glucoki 53.9 11 0.00023 33.6 2.4 30 179-208 417-447 (453)
103 COG3684 LacD Tagatose-1,6-bisp 52.9 48 0.001 27.2 5.6 147 79-258 145-301 (306)
104 PF13808 DDE_Tnp_1_assoc: DDE_ 51.3 71 0.0015 21.3 7.0 56 196-258 22-77 (90)
105 TIGR02045 P_fruct_ADP ADP-spec 49.3 11 0.00025 33.3 1.9 29 179-207 410-439 (446)
106 COG2248 Predicted hydrolase (m 49.3 1.5E+02 0.0032 24.4 7.9 97 22-125 162-265 (304)
107 PF13986 DUF4224: Domain of un 48.7 20 0.00042 20.9 2.2 34 129-165 2-35 (47)
108 PRK12595 bifunctional 3-deoxy- 47.3 74 0.0016 27.5 6.5 81 77-168 165-263 (360)
109 PF04016 DUF364: Domain of unk 46.7 59 0.0013 24.1 5.1 44 55-102 54-97 (147)
110 TIGR01361 DAHP_synth_Bsub phos 45.1 94 0.002 25.5 6.5 78 78-166 73-167 (260)
111 PF02659 DUF204: Domain of unk 44.4 63 0.0014 20.0 4.4 15 196-210 3-17 (67)
112 PRK15452 putative protease; Pr 43.3 2.2E+02 0.0048 25.5 9.0 49 54-102 14-67 (443)
113 cd05014 SIS_Kpsf KpsF-like pro 43.3 69 0.0015 22.5 5.0 39 146-184 62-100 (128)
114 PRK04169 geranylgeranylglycery 41.6 1.3E+02 0.0029 24.2 6.7 50 52-104 21-70 (232)
115 PF10087 DUF2325: Uncharacteri 41.2 57 0.0012 22.0 4.1 40 58-101 43-82 (97)
116 COG1504 Uncharacterized conser 40.2 1.2E+02 0.0027 21.2 5.4 76 23-102 17-97 (121)
117 PF00919 UPF0004: Uncharacteri 39.0 1.1E+02 0.0023 20.9 5.1 61 61-129 34-97 (98)
118 COG4809 Archaeal ADP-dependent 38.2 2.8E+02 0.0061 24.4 12.7 78 60-141 222-309 (466)
119 KOG0257 Kynurenine aminotransf 38.1 65 0.0014 28.3 4.6 50 51-100 160-211 (420)
120 PRK12399 tagatose 1,6-diphosph 38.0 2.6E+02 0.0055 23.9 8.7 151 79-257 140-316 (324)
121 PF05762 VWA_CoxE: VWA domain 36.4 1.2E+02 0.0026 24.1 5.8 33 3-35 35-68 (222)
122 COG1794 RacX Aspartate racemas 36.3 1.4E+02 0.0031 23.9 6.0 63 124-193 142-216 (230)
123 TIGR02494 PFLE_PFLC glycyl-rad 35.9 2.5E+02 0.0055 23.2 9.2 72 81-161 141-217 (295)
124 PRK13396 3-deoxy-7-phosphohept 34.3 2.3E+02 0.005 24.5 7.4 77 81-168 152-246 (352)
125 TIGR03586 PseI pseudaminic aci 33.4 2E+02 0.0042 24.6 6.8 78 78-166 74-168 (327)
126 TIGR01768 GGGP-family geranylg 32.9 1.7E+02 0.0038 23.4 6.1 42 60-104 24-65 (223)
127 smart00642 Aamy Alpha-amylase 31.2 60 0.0013 24.5 3.1 25 80-104 69-93 (166)
128 PF03808 Glyco_tran_WecB: Glyc 30.9 1.8E+02 0.0039 22.0 5.8 21 148-168 91-111 (172)
129 TIGR03278 methan_mark_10 putat 29.9 3.9E+02 0.0085 23.6 10.2 86 63-156 73-165 (404)
130 COG0111 SerA Phosphoglycerate 29.6 1.5E+02 0.0032 25.3 5.5 49 82-130 153-203 (324)
131 PF11167 DUF2953: Protein of u 29.4 42 0.00092 19.8 1.6 19 192-210 2-20 (53)
132 TIGR01093 aroD 3-dehydroquinat 29.3 2.9E+02 0.0063 21.9 10.4 96 64-174 93-195 (228)
133 PRK06901 aspartate-semialdehyd 29.3 3.6E+02 0.0079 23.0 7.7 80 2-106 18-99 (322)
134 PF09314 DUF1972: Domain of un 29.2 2.7E+02 0.0059 21.5 7.6 71 63-138 92-167 (185)
135 PRK13575 3-dehydroquinate dehy 28.9 3.1E+02 0.0068 22.1 8.9 85 80-174 111-202 (238)
136 PF01212 Beta_elim_lyase: Beta 28.9 92 0.002 26.0 4.1 53 49-101 104-165 (290)
137 TIGR03569 NeuB_NnaB N-acetylne 28.3 2.7E+02 0.0059 23.8 6.8 78 78-166 73-170 (329)
138 KOG0174 20S proteasome, regula 28.1 41 0.00089 26.1 1.7 48 189-243 143-191 (224)
139 TIGR00444 mazG MazG family pro 27.5 2.6E+02 0.0057 22.8 6.4 56 195-257 185-247 (248)
140 PF03841 SelA: L-seryl-tRNA se 27.4 37 0.00081 29.3 1.5 21 82-102 158-178 (367)
141 PF04252 RNA_Me_trans: Predict 27.4 83 0.0018 24.6 3.3 39 44-88 69-107 (196)
142 PRK10534 L-threonine aldolase; 27.2 1.1E+02 0.0024 25.7 4.5 37 64-100 130-166 (333)
143 cd01948 EAL EAL domain. This d 27.1 2.3E+02 0.0049 22.1 6.1 52 82-141 133-184 (240)
144 COG2085 Predicted dinucleotide 26.8 1.9E+02 0.004 23.0 5.2 73 59-138 56-139 (211)
145 cd07265 2_3_CTD_N N-terminal d 26.5 1.7E+02 0.0036 20.1 4.7 41 2-42 78-118 (122)
146 TIGR02826 RNR_activ_nrdG3 anae 26.3 2.7E+02 0.0058 20.5 6.6 47 78-133 72-118 (147)
147 PF00218 IGPS: Indole-3-glycer 25.9 2.3E+02 0.0049 23.3 5.7 70 54-137 122-191 (254)
148 PF00128 Alpha-amylase: Alpha 25.4 90 0.002 25.5 3.6 24 80-103 51-74 (316)
149 COG0541 Ffh Signal recognition 24.8 2.4E+02 0.0053 25.2 6.0 82 77-166 165-248 (451)
150 PF04843 Herpes_teg_N: Herpesv 24.2 2E+02 0.0044 21.9 4.9 31 150-180 113-143 (172)
151 smart00052 EAL Putative diguan 23.8 3E+02 0.0065 21.4 6.2 51 83-141 135-185 (241)
152 PF14252 DUF4347: Domain of un 23.6 2.3E+02 0.0049 21.5 5.0 53 115-177 13-67 (165)
153 TIGR03128 RuMP_HxlA 3-hexulose 23.3 3.3E+02 0.0072 21.0 6.2 58 62-132 75-134 (206)
154 TIGR03537 DapC succinyldiamino 23.3 1.4E+02 0.003 25.4 4.3 13 10-22 54-69 (350)
155 COG0520 csdA Selenocysteine ly 23.2 2E+02 0.0043 25.4 5.3 51 51-102 150-200 (405)
156 PRK08673 3-deoxy-7-phosphohept 22.9 4.1E+02 0.0089 22.8 7.0 74 81-165 144-234 (335)
157 COG0036 Rpe Pentose-5-phosphat 22.9 2E+02 0.0042 23.1 4.6 52 62-129 83-136 (220)
158 PRK00278 trpC indole-3-glycero 22.5 3.2E+02 0.007 22.3 6.1 63 59-135 129-191 (260)
159 COG0547 TrpD Anthranilate phos 22.1 5.1E+02 0.011 22.3 7.8 73 139-211 194-284 (338)
160 PLN02271 serine hydroxymethylt 21.9 1.4E+02 0.003 27.7 4.1 50 51-103 285-335 (586)
161 cd02812 PcrB_like PcrB_like pr 21.8 2.2E+02 0.0047 22.8 4.8 42 62-105 24-65 (219)
162 TIGR01769 GGGP geranylgeranylg 21.8 2.8E+02 0.006 21.9 5.3 40 62-104 23-63 (205)
163 TIGR03540 DapC_direct LL-diami 21.6 2.6E+02 0.0057 24.0 5.8 20 81-100 184-203 (383)
164 TIGR00696 wecB_tagA_cpsF bacte 21.6 3.8E+02 0.0081 20.5 7.2 77 80-168 34-110 (177)
165 cd02958 UAS UAS family; UAS is 21.3 1.8E+02 0.004 19.9 4.0 25 83-107 6-30 (114)
166 PRK09562 mazG nucleoside triph 20.9 4.1E+02 0.0089 21.9 6.4 58 194-258 193-257 (262)
167 PRK14038 ADP-dependent glucoki 20.8 75 0.0016 28.4 2.2 30 178-207 419-449 (453)
168 PF03102 NeuB: NeuB family; I 20.8 4.6E+02 0.01 21.3 6.8 50 77-136 52-101 (241)
169 COG2876 AroA 3-deoxy-D-arabino 20.8 4.9E+02 0.011 21.6 7.9 87 78-177 93-196 (286)
170 COG0826 Collagenase and relate 20.1 5.7E+02 0.012 22.1 9.6 76 62-138 25-106 (347)
171 cd01012 YcaC_related YcaC rela 20.1 2.6E+02 0.0056 20.6 4.8 22 79-100 21-42 (157)
172 cd04880 ACT_AAAH-PDT-like ACT 20.0 1.6E+02 0.0035 18.3 3.2 19 2-20 16-34 (75)
173 KOG1184 Thiamine pyrophosphate 20.0 3.5E+02 0.0075 24.8 6.0 69 84-170 8-78 (561)
No 1
>PLN02323 probable fructokinase
Probab=100.00 E-value=1.4e-40 Score=282.04 Aligned_cols=255 Identities=75% Similarity=1.207 Sum_probs=217.7
Q ss_pred CHHHHHHHCCCCCCceEEcCCCCceEEEEEEccCCceeEEEeeCCcccccccccccchhhhcCccEEEEccccCCCchhH
Q 024908 1 MLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCR 80 (260)
Q Consensus 1 ~i~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~ 80 (260)
++++.|++.||+++++.+.++.+|+.+++..+++|+|++++++..+++..++.++++...+++++++|++++.+..+.+.
T Consensus 74 ~i~~~L~~~GI~~~~v~~~~~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (330)
T PLN02323 74 MLADILKKNGVNNEGVRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLRESELDLDLIRKAKIFHYGSISLITEPCR 153 (330)
T ss_pred HHHHHHHHcCCCCcceEEcCCCCceEEEEEECCCCceeEEeecCCchhccCChHHCChHHHccCCEEEEechhccCchHH
Confidence 47899999999999999888889999999988899999988765566667788888777888999999988776655555
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCCCCCchHHHHHHhcCCCCe
Q 024908 81 STQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLK 160 (260)
Q Consensus 81 ~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~~~~~~~~~~~~l~~~g~~ 160 (260)
.....+++.+++.|.++++||+.+...|.+.....+.+.++++++|++++|.+|+..++|....+... +. .++..|++
T Consensus 154 ~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~g~~~~~~~~-~~-~~~~~g~~ 231 (330)
T PLN02323 154 SAHLAAMKIAKEAGALLSYDPNLRLPLWPSAEAAREGIMSIWDEADIIKVSDEEVEFLTGGDDPDDDT-VV-KLWHPNLK 231 (330)
T ss_pred HHHHHHHHHHHHcCCEEEEcCCCChhhccCHHHHHHHHHHHHHhCCEEEcCHHHHHHHhCCCCccHHH-HH-HHHhcCCC
Confidence 67778899999999999999998888887666677788889999999999999999999876543222 22 45557999
Q ss_pred EEEEecCCCceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHhhHHhhhcCC
Q 024908 161 LLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGA 240 (260)
Q Consensus 161 ~vivt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~~~~~g~ 240 (260)
.||||+|++|++++.++..+++|+++++++||+||||+|+|||++++++|++...+..++++++++|+++|++++++.|+
T Consensus 232 ~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaf~Agfl~~l~~g~~~~~~~~~l~~al~~a~a~Aa~~v~~~g~ 311 (330)
T PLN02323 232 LLLVTEGEEGCRYYTKDFKGRVEGFKVKAVDTTGAGDAFVGGLLSQLAKDLSLLEDEERLREALRFANACGAITTTERGA 311 (330)
T ss_pred EEEEecCCCceEEEeCCCceEeCCccCCCCCCCCcHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHHhccCC
Confidence 99999999999999888777889888899999999999999999999999753223345899999999999999999999
Q ss_pred CCCCCCHHHHHHHHhhc
Q 024908 241 IPALPTKEAALKLLHTV 257 (260)
Q Consensus 241 ~~~~~~~~~l~~~~~~~ 257 (260)
..++|+.+++++++++.
T Consensus 312 ~~~~~~~~~v~~~l~~~ 328 (330)
T PLN02323 312 IPALPTKEAVLKLLKKA 328 (330)
T ss_pred ccCCCCHHHHHHHHHHh
Confidence 88899999999988764
No 2
>PLN02967 kinase
Probab=100.00 E-value=3.4e-39 Score=283.91 Aligned_cols=245 Identities=30% Similarity=0.502 Sum_probs=208.1
Q ss_pred CHHHHHHHCCCCCCceEEcCCCCceEEEEEEccCCceeEEEeeCCcccccccccccchhhhcCccEEEEccccCCCchhH
Q 024908 1 MLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCR 80 (260)
Q Consensus 1 ~i~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~ 80 (260)
++++.|++.||+++++.+.++.+|+.+++.++++|++++. ++.++++..+..++++...+.+++++|++++.+..+.+.
T Consensus 274 ~ll~~L~~~GVDts~v~~~~~~~Tgla~V~vd~~Gerr~~-~~~~gAd~~L~~~di~~~~l~~A~i~hfgg~~ll~e~~~ 352 (581)
T PLN02967 274 AMLYYLNVNKVQTRSVCIDGKRATAVSTMKIAKRGRLKTT-CVKPCAEDSLSKSEINIDVLKEAKMFYFNTHSLLDPTMR 352 (581)
T ss_pred HHHHHHHHcCCcccceEecCCCCCcEEEEEECCCCceEEE-EecCChhhhCChhhcCHhHhcCCCEEEEeCchhcccchH
Confidence 4788999999999999988888999999999999998875 335677878888888877889999999999877777678
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCCCCCc--------------
Q 024908 81 STQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHND-------------- 146 (260)
Q Consensus 81 ~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~~~~~-------------- 146 (260)
+....+++.+++.|++++|||+.|..+|.+.......+.++++++|++++|++|+..++|....++
T Consensus 353 ~all~alk~Ak~~Gv~VsFDpNlR~~lw~~~e~~~e~i~elL~~aDILk~NeeEl~~LtG~~~~~e~~~~~~~~~~~~~~ 432 (581)
T PLN02967 353 STTLRAIKISKKLGGVIFYDLNLPLPLWSSSEETKSFIQEAWNLADIIEVTKQELEFLCGIEPTEEFDTKDNDKSKFVHY 432 (581)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCcccccchHHHHHHHHHHHHhCCEEEECHHHHHHHhCCCccccccccccchhccccc
Confidence 899999999999999999999999999976666677788999999999999999999998643110
Q ss_pred hHHHHHHhcCCCCeEEEEecCCCceEEEecCc---eeeecCcccc--cccCCCCchHHHHHHHHHHHhc-------Cccc
Q 024908 147 DNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEF---KGRVPGVKTK--AVDTTGAGDSFVSGILNCLAAD-------QNLI 214 (260)
Q Consensus 147 ~~~~~~~l~~~g~~~vivt~G~~G~~~~~~~~---~~~~~~~~~~--~vdt~GaGDaf~Ag~~~~l~~g-------~~~~ 214 (260)
....++.++..|++.||||+|++|++++.++. ...+++++++ ++|||||||+|+|||+++|+++ ++
T Consensus 433 ~~e~a~~l~~~g~k~VVVTlG~~Ga~~~~~~~~~~v~~~~a~~V~V~vVDTTGAGDAF~AGfL~~Ll~g~~~~~g~~~-- 510 (581)
T PLN02967 433 SPEVVAPLWHENLKVLFVTNGTSKIHYYTKEHNGAVHGMEDAPITPFTSDMSASGDGIVAGLMRMLTVQPHLITDKGY-- 510 (581)
T ss_pred hHHHHHHHHhCCCCEEEEEECccceEEEECCCceeEeeccCCCCCCCCCCCCchhHHHHHHHHHHHHhccCccccccc--
Confidence 11234566677999999999999999998753 3334445555 5999999999999999999984 45
Q ss_pred ccHHHHHHHHHHHHHHhhHHhhhcCCCCCCCCHHHHHHH
Q 024908 215 KDENRLREALLFANACGALTVTERGAIPALPTKEAALKL 253 (260)
Q Consensus 215 ~~~~~~~~a~~~a~~~Aa~~~~~~g~~~~~~~~~~l~~~ 253 (260)
++++++||+++||++++..|+..++|+.+++++.
T Consensus 511 -----LeeaLrfAnAaAAL~vt~~GA~~glPt~~eV~~~ 544 (581)
T PLN02967 511 -----LEKTIKYAIDCGVIDQWLLARTRGFPPKEDMEDE 544 (581)
T ss_pred -----HHHHHHHHHHHHHHHhccCCCccCCCCHHHHhhh
Confidence 9999999999999999999999999999999754
No 3
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=4.9e-39 Score=280.40 Aligned_cols=249 Identities=34% Similarity=0.537 Sum_probs=206.0
Q ss_pred CHHHHHHHCCCCCCceEEcCCCCceEEEEEEc--cCCceeEEEeeCCcccccccccccchhhhcCccEEEEccccCCCch
Q 024908 1 MLANILKENNVDTSGVRYDSTARTALAFVTLR--ADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEP 78 (260)
Q Consensus 1 ~i~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~ 78 (260)
++++.|+++||+++++.+.++.+|+.+++.++ .+| +.+.+++..+++..+..++++...+++++++|++++.+..+.
T Consensus 203 ~l~~~L~~~GVDts~v~~~~~~~Tgla~V~v~~~~~g-r~~~~~~~~gA~~~L~~~di~~~~l~~a~ilh~~~~~l~~~~ 281 (496)
T PLN02543 203 ELVLMMNKERVQTRAVKFDENAKTACSRMKIKFRDGG-KMVAETVKEAAEDSLLASELNLAVLKEARMFHFNSEVLTSPS 281 (496)
T ss_pred HHHHHHHHcCCcccceEecCCCCCceEEEEEEeCCCC-CEEEEecCCCHHHhCChhhcCHhHhCCCceEEECChhhcCch
Confidence 47899999999999999988889999998874 444 556544455677778888888888999999999998776666
Q ss_pred hHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCC--------CCC-----
Q 024908 79 CRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGD--------DHN----- 145 (260)
Q Consensus 79 ~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~--------~~~----- 145 (260)
..+....+++.+++.|++|+|||+.|..+|.+.......+.++++++|++++|++|++.++|.. +.+
T Consensus 282 ~~~a~~~al~~Ak~~G~~VsfDpN~R~~LW~~~~~~~~~i~~~l~~aDIl~~SeeEa~~Ltg~~~~~~~~~~~~~~~~~~ 361 (496)
T PLN02543 282 MQSTLFRAIELSKKFGGLIFFDLNLPLPLWRSRDETRELIKKAWNEADIIEVSRQELEFLLDEDYYERKRNYPPQYYAES 361 (496)
T ss_pred HHHHHHHHHHHHHHCCCEEEEeCCCCccccCCHHHHHHHHHHHHHhCCEEEecHHHHHHHhCCCcccccccccchhhhhh
Confidence 6788999999999999999999999999998777777788899999999999999999999864 111
Q ss_pred ------------chHHHHHHhcCCCCeEEEEecCCCceEEEecCceeeecCc-----ccccccCCCCchHHHHHHHHHHH
Q 024908 146 ------------DDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFKGRVPGV-----KTKAVDTTGAGDSFVSGILNCLA 208 (260)
Q Consensus 146 ------------~~~~~~~~l~~~g~~~vivt~G~~G~~~~~~~~~~~~~~~-----~~~~vdt~GaGDaf~Ag~~~~l~ 208 (260)
.....+..+++.|++.||||+|++|+++++++....++.. +..+||||||||+|+|||+++|.
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~VVVT~G~~Ga~~~t~~~~g~v~~~~~~~v~~~~VDTTGAGDAF~AGfL~~Ll 441 (496)
T PLN02543 362 FEQTKNWRDYYHYTPEEIAPLWHDGLKLLLVTDGTLRIHYYTPKFDGVVVGTEDVLITPFTCDRTGSGDAVVAAIMRKLT 441 (496)
T ss_pred hhhhhcccccccCCHHHHHHHHHCCCCEEEEEcCCCcEEEEECCCcccccccccccCCCCCcCCCchHHHHHHHHHHHHH
Confidence 0112235677789999999999999999986422222111 11248999999999999999998
Q ss_pred h-------cCcccccHHHHHHHHHHHHHHhhHHhhhcCCCCCCCCHHHHHHHHhhc
Q 024908 209 A-------DQNLIKDENRLREALLFANACGALTVTERGAIPALPTKEAALKLLHTV 257 (260)
Q Consensus 209 ~-------g~~~~~~~~~~~~a~~~a~~~Aa~~~~~~g~~~~~~~~~~l~~~~~~~ 257 (260)
+ +++ ++++++||+++||++|++.|+.+++|+.++++++++++
T Consensus 442 ~~~~~~~~g~~-------l~ealrfAnAaaAl~vt~~GA~~~lPt~~ev~~~~~~~ 490 (496)
T PLN02543 442 TCPEMFEDQDV-------LERQLRFAVAAGIISQWTIGAVRGFPTESATQNLKEQV 490 (496)
T ss_pred hcccccccccc-------HHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHhh
Confidence 6 556 99999999999999999999999999999999999876
No 4
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=100.00 E-value=3e-38 Score=264.88 Aligned_cols=244 Identities=39% Similarity=0.603 Sum_probs=205.0
Q ss_pred CHHHHHHHCCCCCCceEEcCCCCceEEEEEEccCCceeEEEeeCCcccccccccccchhhhcCccEEEEccccCCCchhH
Q 024908 1 MLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCR 80 (260)
Q Consensus 1 ~i~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~ 80 (260)
++++.|+++||+++++.+.++.+|+.+++.++++|+|++.++...+++..+..++++ .+++.+++|++++.+..+.++
T Consensus 59 ~i~~~l~~~gI~~~~~~~~~~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 136 (304)
T PRK09434 59 FMQQTLQDEGVDTTYLRLDPAHRTSTVVVDLDDQGERSFTFMVRPSADLFLQPQDLP--PFRQGEWLHLCSIALSAEPSR 136 (304)
T ss_pred HHHHHHHHcCCCCcceEEcCCCCceEEEEEECCCCCEeEEEecCCchhhhCCHHHhh--hhcCCCEEEEccccccCchHH
Confidence 378899999999999988888899999999988899998766555555445555553 367899999998776665566
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCCCCCchHHHHHHhcC-CCC
Q 024908 81 STQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFH-PNL 159 (260)
Q Consensus 81 ~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~~~~~~~~~~~~l~~-~g~ 159 (260)
+...++++.+++.+.++++|++.+...|.....+.+.+.++++++|++++|.+|+..++|..+.+ ++++.+.+ .|+
T Consensus 137 ~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~e~~~l~g~~~~~---~~~~~l~~~~g~ 213 (304)
T PRK09434 137 STTFEAMRRIKAAGGFVSFDPNLREDLWQDEAELRECLRQALALADVVKLSEEELCFLSGTSQLE---DAIYALADRYPI 213 (304)
T ss_pred HHHHHHHHHHHHcCCEEEECCCCChhhccCHHHHHHHHHHHHHhcceeeCCHHHHHHHhCCCCHH---HHHHHHHhhcCC
Confidence 77788999999999999999998887887666778888889999999999999999999875433 35677776 689
Q ss_pred eEEEEecCCCceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHhhHHhhhcC
Q 024908 160 KLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERG 239 (260)
Q Consensus 160 ~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~~~~~g 239 (260)
+.||||+|++|++++++++.+++|+++++++|||||||+|+|||+++|++|++. .+..++++++++|+++|+.++++.|
T Consensus 214 ~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vDttGAGD~f~ag~~~~l~~g~~~-~~~~~~~~a~~~a~~~Aa~~v~~~g 292 (304)
T PRK09434 214 ALLLVTLGAEGVLVHTRGQVQHFPAPSVDPVDTTGAGDAFVAGLLAGLSQAGLW-TDEAELAEIIAQAQACGALATTAKG 292 (304)
T ss_pred cEEEEEecCCceEEEeCCceeEeCCCCCCCCcCCCchHHHHHHHHHHHHcCCCc-cchHHHHHHHHHHHHHHHHHHcccC
Confidence 999999999999999988888999888999999999999999999999999721 1123399999999999999999999
Q ss_pred CCCCCCCHHHH
Q 024908 240 AIPALPTKEAA 250 (260)
Q Consensus 240 ~~~~~~~~~~l 250 (260)
+..++|+.+++
T Consensus 293 ~~~~~~~~~~~ 303 (304)
T PRK09434 293 AMTALPNRQEL 303 (304)
T ss_pred CcCCCCChHHc
Confidence 99888888765
No 5
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=3.7e-37 Score=267.07 Aligned_cols=243 Identities=19% Similarity=0.162 Sum_probs=199.4
Q ss_pred CHHHHHHHCCCCCCceEEcCCCCceEEEEEEccCCceeEEEeeCCcccccccccccchhhhcCccEEEEccccCCCchhH
Q 024908 1 MLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCR 80 (260)
Q Consensus 1 ~i~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~ 80 (260)
++++.|++.||++.++.+ .+.+|++++++++++|+|+++.++ +++..++.+++....+++++++|++++.+..+...
T Consensus 165 ~i~~~L~~~GVd~~~~~~-~~~~Tg~~~ilv~~~gertii~~~--Ga~~~l~~~~~~~~~i~~adiv~l~g~~~~~~~~~ 241 (426)
T PLN02813 165 FYRTKLRRANVHFLSQPV-KDGTTGTVIVLTTPDAQRTMLSYQ--GTSSTVNYDSCLASAISKSRVLVVEGYLWELPQTI 241 (426)
T ss_pred HHHHHHHHcCCcccceec-CCCCceEEEEEEcCCCCceeeecc--CchhhCCccccCHHHHhcCCEEEEEeeecCCCchH
Confidence 478899999999998764 456899999999999999999883 45555666666667789999999988655434345
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCCCCCchHHHHHHhcCCCCe
Q 024908 81 STQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLK 160 (260)
Q Consensus 81 ~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~~~~~~~~~~~~l~~~g~~ 160 (260)
+.+..+++.+++.|+++++|+.+.... ..........+++++|++++|++|+..++|....++...+++.| ..+++
T Consensus 242 ~~~~~~~~~ak~~g~~v~~d~s~~~~~---~~~~~~l~~~ll~~vDil~~Ne~Ea~~l~g~~~~~~~~~a~~~L-~~~~~ 317 (426)
T PLN02813 242 EAIAQACEEAHRAGALVAVTASDVSCI---ERHRDDFWDVMGNYADILFANSDEARALCGLGSEESPESATRYL-SHFCP 317 (426)
T ss_pred HHHHHHHHHHHHcCCEEEEECCCcchh---hhhHHHHHHHHHhcCCEEEeCHHHHHHHhCCCCCCCHHHHHHHH-HcCCC
Confidence 788889999999999999998643211 01112334456689999999999999999875444444455555 46899
Q ss_pred EEEEecCCCceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcC-cccccHHHHHHHHHHHHHHhhHHhhhcC
Q 024908 161 LLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQ-NLIKDENRLREALLFANACGALTVTERG 239 (260)
Q Consensus 161 ~vivt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~-~~~~~~~~~~~a~~~a~~~Aa~~~~~~g 239 (260)
.||||+|++|++++.++..+++|+++++++|||||||+|+|||++++.+|+ + +++++++|+++|+.++++.|
T Consensus 318 ~VVVT~G~~Ga~~~~~~~~~~~pa~~v~vVDTtGAGDAF~Agfl~~l~~G~~~-------l~~al~~A~a~Aa~~v~~~G 390 (426)
T PLN02813 318 LVSVTDGARGSYIGVKGEAVYIPPSPCVPVDTCGAGDAYAAGILYGLLRGVSD-------LRGMGELAARVAATVVGQQG 390 (426)
T ss_pred EEEEEeCCCCeEEEECCEEEEeCCCCCCcccCCChHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHHHHcccC
Confidence 999999999999998888889999999999999999999999999999999 9 99999999999999999999
Q ss_pred CCCCCCCHHHHHHHHhhc
Q 024908 240 AIPALPTKEAALKLLHTV 257 (260)
Q Consensus 240 ~~~~~~~~~~l~~~~~~~ 257 (260)
+...+|+.+++.+.++.+
T Consensus 391 a~~~~~~~~e~~~~~~~~ 408 (426)
T PLN02813 391 TRLRVEDAVELAESFALH 408 (426)
T ss_pred CCcCHHHHHHHHHHHHHH
Confidence 999889999999888764
No 6
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=100.00 E-value=7.8e-37 Score=255.29 Aligned_cols=230 Identities=50% Similarity=0.814 Sum_probs=193.4
Q ss_pred CHHHHHHHCCCCCCceEEcCCCCceEEEEEEccCCceeEEEeeCCcccccccccccchhhhcCccEEEEccccCCCchhH
Q 024908 1 MLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCR 80 (260)
Q Consensus 1 ~i~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~ 80 (260)
++++.|++.||+++++.+.++.+|+++++.++++|+|++.+++......... ..+....+++++++|++++.+.++...
T Consensus 59 ~i~~~l~~~gi~~~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~ 137 (295)
T cd01167 59 FLLETLKEAGVDTRGIQFDPAAPTTLAFVTLDADGERSFEFYRGPAADLLLD-TELNPDLLSEADILHFGSIALASEPSR 137 (295)
T ss_pred HHHHHHHHcCCCchheeecCCCCceEEEEEECCCCCEeEEeecCCcHhhhcC-ccCChhHhccCCEEEEechhhccchHH
Confidence 3678999999999999877888999999999888999988874332221111 114456788999999988755555556
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCCCCCchHHHHHHhcCCCCe
Q 024908 81 STQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLK 160 (260)
Q Consensus 81 ~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~~~~~~~~~~~~l~~~g~~ 160 (260)
+.+..+++.+++.+.++++||+.+..+|.......+.+.++++++|++++|..|+..++|....++ .++.+.+.|++
T Consensus 138 ~~~~~~~~~~~~~g~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~d~l~~n~~E~~~l~~~~~~~~---~~~~l~~~g~~ 214 (295)
T cd01167 138 SALLELLEAAKKAGVLISFDPNLRPPLWRDEEEARERIAELLELADIVKLSDEELELLFGEEDPEE---IAALLLLFGLK 214 (295)
T ss_pred HHHHHHHHHHHHcCCEEEEcCCCChhhcCCHHHHHHHHHHHHHhCCEEEecHHHHHHHhCCCCHHH---HHHHHhhcCCC
Confidence 778889999999999999999877666765555667788899999999999999999998765433 45677789999
Q ss_pred EEEEecCCCceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcC-------cccccHHHHHHHHHHHHHHhhH
Q 024908 161 LLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQ-------NLIKDENRLREALLFANACGAL 233 (260)
Q Consensus 161 ~vivt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~-------~~~~~~~~~~~a~~~a~~~Aa~ 233 (260)
.+|||+|++|++++++++.+++|+++++++|||||||+|+|||+++|++|+ + +++|+++|+++|+.
T Consensus 215 ~vvvt~G~~G~~~~~~~~~~~~~a~~~~vvDttGAGD~f~a~~~~~l~~g~~~~~~~~~-------~~~a~~~a~~~aa~ 287 (295)
T cd01167 215 LVLVTRGADGALLYTKGGVGEVPGIPVEVVDTTGAGDAFVAGLLAQLLSRGLLALDEDE-------LAEALRFANAVGAL 287 (295)
T ss_pred EEEEecCCcceEEEECCcceeeCCCCcceeeCCCccHHHHHHHHHHHHhCCcccccHHH-------HHHHHHHHHHhhHH
Confidence 999999999999999888889999889999999999999999999999999 8 99999999999999
Q ss_pred HhhhcCCC
Q 024908 234 TVTERGAI 241 (260)
Q Consensus 234 ~~~~~g~~ 241 (260)
+|+++|++
T Consensus 288 ~~~~~G~~ 295 (295)
T cd01167 288 TCTKAGAI 295 (295)
T ss_pred HhcccCCC
Confidence 99999863
No 7
>PTZ00292 ribokinase; Provisional
Probab=100.00 E-value=6.6e-37 Score=259.16 Aligned_cols=236 Identities=27% Similarity=0.339 Sum_probs=196.9
Q ss_pred CHHHHHHHCCCCCCceEEcCCCCceEEEEEEc-cCCceeEEEeeCCcccccccccccch--hhhcC-ccEEEEccccCCC
Q 024908 1 MLANILKENNVDTSGVRYDSTARTALAFVTLR-ADGEREFLFFRHPSADMLLCESELDK--NLIKQ-GSIFHYGSISLIA 76 (260)
Q Consensus 1 ~i~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~d~v~~~~~~~~~ 76 (260)
++++.|++.||+++++.+.++.+|++++++++ .+|++.++++ .+++..++++.++. ..+.+ ++++++++
T Consensus 83 ~i~~~l~~~GI~~~~~~~~~~~~t~~~~~~~~~~~g~~~~~~~--~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~----- 155 (326)
T PTZ00292 83 DTIKNFKRNGVNTSFVSRTENSSTGLAMIFVDTKTGNNEIVII--PGANNALTPQMVDAQTDNIQNICKYLICQN----- 155 (326)
T ss_pred HHHHHHHHcCCChhhEEEcCCCCCcEEEEEEeCCCCceEEEEe--CCccccCCHHHHHHHHHHhhhhCCEEEECC-----
Confidence 37889999999999998888889999999998 7899988877 45555677666653 34567 88887654
Q ss_pred chhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCCC--CCchHHHHHHh
Q 024908 77 EPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDD--HNDDNVVLEKL 154 (260)
Q Consensus 77 ~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~~--~~~~~~~~~~l 154 (260)
+.+.+...++++.+++.|.++++|++++...|. .+.+.++++++|++++|.+|++.++|... .++..++++.+
T Consensus 156 ~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~-----~~~~~~~l~~~dii~~n~~E~~~l~g~~~~~~~~~~~~~~~l 230 (326)
T PTZ00292 156 EIPLETTLDALKEAKERGCYTVFNPAPAPKLAE-----VEIIKPFLKYVSLFCVNEVEAALITGMEVTDTESAFKASKEL 230 (326)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEECCCCccccc-----cccHHHHHhcCCEEcCCHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 234567778899999999999999986554332 24677888999999999999999988652 33334566778
Q ss_pred cCCCCeEEEEecCCCceEEEecCc-eeeecCcccccccCCCCchHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHhhH
Q 024908 155 FHPNLKLLIVTEGSKGCRYYTKEF-KGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGAL 233 (260)
Q Consensus 155 ~~~g~~~vivt~G~~G~~~~~~~~-~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~ 233 (260)
.+.+++.||||+|++|++++.++. .+++|+++++++||+||||+|+|||+++|++|++ +++|+++|+++|+.
T Consensus 231 ~~~g~~~vvvT~G~~Ga~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~l~~l~~g~~-------~~~al~~a~a~Aa~ 303 (326)
T PTZ00292 231 QQLGVENVIITLGANGCLIVEKENEPVHVPGKRVKAVDTTGAGDCFVGSMAYFMSRGKD-------LKESCKRANRIAAI 303 (326)
T ss_pred HHcCCCeEEEEeCCCcEEEEeCCCceEEccCCccccCCCcchHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHH
Confidence 888999999999999999988764 4888988889999999999999999999999999 99999999999999
Q ss_pred HhhhcCCCCCCCCHHHHHHHHh
Q 024908 234 TVTERGAIPALPTKEAALKLLH 255 (260)
Q Consensus 234 ~~~~~g~~~~~~~~~~l~~~~~ 255 (260)
++++.|+..++|+.+++++.++
T Consensus 304 ~v~~~G~~~~~~~~~~~~~~~~ 325 (326)
T PTZ00292 304 SVTRHGTQSSYPHPSELPADVK 325 (326)
T ss_pred HcCCCCccccCCCHHHHHHHhc
Confidence 9999999988999999998775
No 8
>PRK11142 ribokinase; Provisional
Probab=100.00 E-value=8.2e-37 Score=256.47 Aligned_cols=231 Identities=26% Similarity=0.362 Sum_probs=195.4
Q ss_pred CHHHHHHHCCCCCCceEEcCCCCceEEEEEEccCCceeEEEeeCCcccccccccccch--hhhcCccEEEEccccCCCch
Q 024908 1 MLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDK--NLIKQGSIFHYGSISLIAEP 78 (260)
Q Consensus 1 ~i~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~v~~~~~~~~~~~ 78 (260)
++++.|++.||+++++.+.++.+|++++++++.+|+|++..+ .+++..+++++++. ..+++++++|+++. .
T Consensus 70 ~i~~~L~~~gV~~~~i~~~~~~~t~~~~~~~~~~g~r~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~-----~ 142 (306)
T PRK11142 70 SMRQQLAKDGIDTAPVSVIKGESTGVALIFVNDEGENSIGIH--AGANAALTPALVEAHRELIANADALLMQLE-----T 142 (306)
T ss_pred HHHHHHHHcCCChhhEEEcCCCCCCEEEEEECCCCCEEEEEe--CCccccCCHHHHHHHHhhhccCCEEEEeCC-----C
Confidence 378999999999999988888899999999998899998877 34555567666653 55789999988742 2
Q ss_pred hHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCCCC--CchHHHHHHhcC
Q 024908 79 CRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDH--NDDNVVLEKLFH 156 (260)
Q Consensus 79 ~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~~~--~~~~~~~~~l~~ 156 (260)
+.+.+..+++.+++.|.++++|++.... ....+++++|++++|.+|++.++|.... ++...+++.+.+
T Consensus 143 ~~~~~~~~~~~a~~~g~~v~~d~~~~~~----------~~~~~~~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~~l~~ 212 (306)
T PRK11142 143 PLETVLAAAKIAKQHGTKVILNPAPARE----------LPDELLALVDIITPNETEAEKLTGIRVEDDDDAAKAAQVLHQ 212 (306)
T ss_pred CHHHHHHHHHHHHHcCCEEEEECCCCcc----------cCHHHHhhCCEEcCCHHHHHHHhCCCCCChHHHHHHHHHHHH
Confidence 3567788899999999999999864322 1235788999999999999999986532 333456677888
Q ss_pred CCCeEEEEecCCCceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHhhHHhh
Q 024908 157 PNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVT 236 (260)
Q Consensus 157 ~g~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~~~ 236 (260)
.|++.||||+|++|++++.++..+++|+++++++||+||||+|+|||++++++|++ +++|+++|+++|+.+|+
T Consensus 213 ~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvDt~GAGDaF~Agfi~~l~~g~~-------~~~al~~a~~~Aa~~~~ 285 (306)
T PRK11142 213 KGIETVLITLGSRGVWLSENGEGQRVPGFRVQAVDTIAAGDTFNGALVTALLEGKP-------LPEAIRFAHAAAAIAVT 285 (306)
T ss_pred hCCCeEEEEECCCcEEEEeCCcceeccCCCcccccCCCchhHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHcC
Confidence 89999999999999999988888889988899999999999999999999999999 99999999999999999
Q ss_pred hcCCCCCCCCHHHHHHHHh
Q 024908 237 ERGAIPALPTKEAALKLLH 255 (260)
Q Consensus 237 ~~g~~~~~~~~~~l~~~~~ 255 (260)
+.|+.+++|+.++++++++
T Consensus 286 ~~G~~~~~~~~~~~~~~~~ 304 (306)
T PRK11142 286 RKGAQPSIPWREEIDAFLQ 304 (306)
T ss_pred CCcccccCCCHHHHHHHHh
Confidence 9999888899999988765
No 9
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=100.00 E-value=2.4e-36 Score=252.18 Aligned_cols=231 Identities=36% Similarity=0.513 Sum_probs=195.1
Q ss_pred CHHHHHHHCCCCCCceEEcCCCCceEEEEEEccCCceeEEEeeCCcccccccccccchhhhcCccEEEEccccCC-Cchh
Q 024908 1 MLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLI-AEPC 79 (260)
Q Consensus 1 ~i~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~-~~~~ 79 (260)
++++.|++.||+++++.+.++.+|+.+++.++.+|+|++.+++...+...++.+.+....++++|++|++++.+. .+.+
T Consensus 62 ~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 141 (294)
T cd01166 62 FILAELRREGVDTSHVRVDPGRPTGLYFLEIGAGGERRVLYYRAGSAASRLTPEDLDEAALAGADHLHLSGITLALSESA 141 (294)
T ss_pred HHHHHHHHcCCCCceEEEeCCCcceEEEEEecCCCCceEEEeCCCChhHhCChhhCCHHHHhCCCEEEEcCcchhhCHHH
Confidence 367899999999999988888899999999988889998887654555567777776677899999999986542 2323
Q ss_pred HHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCCCCCchHHHHHHhcCCCC
Q 024908 80 RSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNL 159 (260)
Q Consensus 80 ~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~~~~~~~~~~~~l~~~g~ 159 (260)
.+.+..+++++++.+.++++||..+..+|. .......+..+++++|++++|..|++.+++....++..+.++.+ +.|+
T Consensus 142 ~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~-~~~~~~~~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~l-~~g~ 219 (294)
T cd01166 142 REALLEALEAAKARGVTVSFDLNYRPKLWS-AEEAREALEELLPYVDIVLPSEEEAEALLGDEDPTDAAERALAL-ALGV 219 (294)
T ss_pred HHHHHHHHHHHHHcCCEEEECCCCcchhcC-hHHHHHHHHHHHHhCCEEEcCHHHHHHHhCCCCchhHHHHHHhh-cCCc
Confidence 578888999999999999999987655442 33445667789999999999999999999876545555555666 7899
Q ss_pred eEEEEecCCCceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHhhHHhhhcC
Q 024908 160 KLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERG 239 (260)
Q Consensus 160 ~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~~~~~g 239 (260)
+.|+||+|++|++++.++..+++|+++++++||+||||+|+|||+++|++|++ +++|+++|+++|+.++++.|
T Consensus 220 ~~viit~G~~G~~~~~~~~~~~~~~~~~~~vdt~GAGD~f~a~~~~~l~~g~~-------~~~a~~~a~~~aa~~i~~~G 292 (294)
T cd01166 220 KAVVVKLGAEGALVYTGGGRVFVPAYPVEVVDTTGAGDAFAAGFLAGLLEGWD-------LEEALRFANAAAALVVTRPG 292 (294)
T ss_pred cEEEEEEcCCceEEEECCceEEeCCCCcccccCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999998888899988889999999999999999999999999 99999999999999999998
Q ss_pred C
Q 024908 240 A 240 (260)
Q Consensus 240 ~ 240 (260)
+
T Consensus 293 ~ 293 (294)
T cd01166 293 D 293 (294)
T ss_pred C
Confidence 6
No 10
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=1.8e-36 Score=266.30 Aligned_cols=247 Identities=26% Similarity=0.326 Sum_probs=198.3
Q ss_pred CHHHHHHHCCCCCCceEEcC--------CCCceEEEEEEccCCceeEEEeeCCccccccc-cccc---chhhhcCccEEE
Q 024908 1 MLANILKENNVDTSGVRYDS--------TARTALAFVTLRADGEREFLFFRHPSADMLLC-ESEL---DKNLIKQGSIFH 68 (260)
Q Consensus 1 ~i~~~l~~~gi~~~~v~~~~--------~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~d~v~ 68 (260)
++++.|++.||+++++...+ +.+|+.++++++++|++.+............. ...+ ....++++|++|
T Consensus 150 ~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~vlvd~~ger~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~adiv~ 229 (470)
T PLN02341 150 FLLDVLAEEGISVVGLIEGTDAGDSSSASYETLLCWVLVDPLQRHGFCSRADFGPEPAFSWISKLSAEAKMAIRQSKALF 229 (470)
T ss_pred HHHHHHHHcCCeeeEEEecCccccccccCCCceeEEEEEcCCCCceeeeccccccccchhhhhcccHHHHhhhhcCCEEE
Confidence 47899999999999887654 35799999999988987665321111110000 0011 125678999999
Q ss_pred EccccCCCchhHHHHHHHHHHHHHCCCeEEEcCCCCC-CCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCCCCCch
Q 024908 69 YGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRL-PLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDD 147 (260)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~-~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~~~~~~ 147 (260)
++++.+ .+.+.+.+..+++.+++.|.++++||+++. .+|.+.+.....+.++++++|++++|++|+..++|..+.+
T Consensus 230 lsg~~~-~~~~~~~~~~~~~~Ak~~g~~V~~Dp~~~~~~~~~~~~~~~~~l~~~L~~~Dil~~Ne~Ea~~l~g~~~~~-- 306 (470)
T PLN02341 230 CNGYVF-DELSPSAIASAVDYAIDVGTAVFFDPGPRGKSLLVGTPDERRALEHLLRMSDVLLLTSEEAEALTGIRNPI-- 306 (470)
T ss_pred EeceeC-CcCCHHHHHHHHHHHHHcCCEEEEeCCCcccccccChHHHHHHHHHHHhhCCEEEecHHHHHHHhCCCCHH--
Confidence 998754 345678888999999999999999998764 3343333344567889999999999999999999875433
Q ss_pred HHHHHHhcCCC--CeEEEEecCCCceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCcccccHHHHHHHHH
Q 024908 148 NVVLEKLFHPN--LKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALL 225 (260)
Q Consensus 148 ~~~~~~l~~~g--~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~ 225 (260)
++++.|.+.| .+.||||+|++|++++.++..+++|+++++++|||||||+|+|||++++.+|++ +++|++
T Consensus 307 -~a~~~l~~~g~~~k~VVVTlG~~Ga~~~~~~~~~~vpa~~v~vVDTtGAGDaF~Agfl~gll~G~~-------l~eal~ 378 (470)
T PLN02341 307 -LAGQELLRPGIRTKWVVVKMGSKGSILVTRSSVSCAPAFKVNVVDTVGCGDSFAAAIALGYIHNLP-------LVNTLT 378 (470)
T ss_pred -HHHHHHHhcCCCCCEEEEeeCCCCeEEEECCeeEEeCCCCcCCCCCcCccHHHHHHHHHHHHcCCC-------HHHHHH
Confidence 3556777666 589999999999999999888899999999999999999999999999999999 999999
Q ss_pred HHHHHhhHHhhhcCCCCCCCCHHHHHHHHhhcc
Q 024908 226 FANACGALTVTERGAIPALPTKEAALKLLHTVA 258 (260)
Q Consensus 226 ~a~~~Aa~~~~~~g~~~~~~~~~~l~~~~~~~~ 258 (260)
+|+++|++++++.|+..++|+.+++++++++..
T Consensus 379 ~A~a~aA~~v~~~Ga~~~~p~~~ev~~~l~~~~ 411 (470)
T PLN02341 379 LANAVGAATAMGCGAGRNVATLEKVLELLRASN 411 (470)
T ss_pred HHHHHHHHHHcCcCCCCCCCCHHHHHHHHHhcC
Confidence 999999999999999999999999999887654
No 11
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.2e-36 Score=252.72 Aligned_cols=240 Identities=38% Similarity=0.562 Sum_probs=207.0
Q ss_pred CHHHHHHHCCCCCCceEEcCCCCceEEEEEEccCCceeEEEeeCCcccccccccccchhhhcCccEEEEccccCCCchhH
Q 024908 1 MLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCR 80 (260)
Q Consensus 1 ~i~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~ 80 (260)
++++.|++.||+++++......+|+.+.+.++++|+|.+.+++.. +...++++.+++..+...+++|++++.+..+.
T Consensus 68 ~~~~~l~~~GVd~~~~~~~~~~~tg~~~i~~~~~g~r~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-- 144 (311)
T COG0524 68 FLLEELRKEGVDTSHVVTDEGATTGLALILVDEDGERTFVFYRGA-AALLLTPEDLDEDELAGADVLHISGIQLEIPP-- 144 (311)
T ss_pred HHHHHHHHcCCccceEEEcCCCcceEEEEEEcCCCceeEEEECCc-ccccCChHHcChHHHhhcCeeeEEEeecCCCh--
Confidence 378899999999999988888899999999999999999998654 56667888887678889999999988665432
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCCCCCchHHHHHHhcCCCCe
Q 024908 81 STQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLK 160 (260)
Q Consensus 81 ~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~~~~~~~~~~~~l~~~g~~ 160 (260)
+....+++.+++.+.++++|++++...|. .+.+..+++++|++++|.+|++.++|. .++.......++..+++
T Consensus 145 ~~~~~~~~~a~~~g~~v~~d~~~~~~~~~-----~~~~~~~l~~~d~~~~n~~E~~~l~g~--~~~~~~~~~~~~~~~~~ 217 (311)
T COG0524 145 EALLAALELAKAAGVTVSFDLNPRPALWD-----RELLEELLALADILFPNEEEAELLTGL--EEDAEAAAALLLAKGVK 217 (311)
T ss_pred HHHHHHHHHHHHcCCeEEEecCCCccccc-----hhhHHHHHhhCCEEeCCHHHHHHHhCC--CccHHHHHHHHhhcCCC
Confidence 78889999999999999999999988774 567788999999999999999999997 12222233567789999
Q ss_pred EEEEecCCCceEEEecCc---eeeecCcccccccCCCCchHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHhhHHhhh
Q 024908 161 LLIVTEGSKGCRYYTKEF---KGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTE 237 (260)
Q Consensus 161 ~vivt~G~~G~~~~~~~~---~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~~~~ 237 (260)
.++||+|++|+++++++. ....++++++++|||||||+|.|||++++++|++ +++++++|+++|+.++++
T Consensus 218 ~vvvt~G~~Ga~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~agfl~~~~~g~~-------~~~a~~~a~a~aa~~~~~ 290 (311)
T COG0524 218 TVVVTLGAEGAVVFTGGGEVTVPVPAAFKVKVVDTTGAGDAFAAGFLAGLLEGKS-------LEEALRFANAAAALAVTR 290 (311)
T ss_pred EEEEEeCCCcEEEEeCCCceeeccCCCCccccccCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHhhhhhcc
Confidence 999999999999999864 2233356678999999999999999999999999 999999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHhhc
Q 024908 238 RGAIPALPTKEAALKLLHTV 257 (260)
Q Consensus 238 ~g~~~~~~~~~~l~~~~~~~ 257 (260)
.|+...+|+.+++...++..
T Consensus 291 ~g~~~~~p~~~~~~~~~~~~ 310 (311)
T COG0524 291 PGARPSLPTREEVEAFLEEL 310 (311)
T ss_pred CCCCCCCCCHHHHHHHHhcc
Confidence 99999999999999998754
No 12
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=100.00 E-value=2.3e-36 Score=254.33 Aligned_cols=225 Identities=24% Similarity=0.296 Sum_probs=189.6
Q ss_pred CHHHHHHHCCCCCCceEEcCCCCceEEEEEEccCCceeEEEeeCCcccccccccccchhhhcCccEEEEccccCCCchhH
Q 024908 1 MLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCR 80 (260)
Q Consensus 1 ~i~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~ 80 (260)
++++.|+++||+++++.+. +.+|+.++++++++|+|+++.+ .+++..++.+++....+++++++|++++.+..+ .
T Consensus 86 ~i~~~l~~~GV~~~~~~~~-~~~t~~~~~~~~~~g~r~~~~~--~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~--~ 160 (312)
T cd01168 86 FLLKDLRAAGVDTRYQVQP-DGPTGTCAVLVTPDAERTMCTY--LGAANELSPDDLDWSLLAKAKYLYLEGYLLTVP--P 160 (312)
T ss_pred HHHHHHHHCCCccccccCC-CCCceEEEEEEcCCCceeeecc--cchhhcCChhHCCHHHHccCCEEEEEEEecCCC--H
Confidence 3788999999999988754 5789999999998999998766 456667888888877889999999998654322 3
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCCCCCchHHHHHHhcCCCCe
Q 024908 81 STQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLK 160 (260)
Q Consensus 81 ~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~~~~~~~~~~~~l~~~g~~ 160 (260)
+.+..+++.+++.|.++++|+..+.. .......+.++++++|++++|.+|++.++|.. .++..++++.+++.|++
T Consensus 161 ~~~~~~~~~a~~~g~~v~~d~~~~~~----~~~~~~~~~~~l~~~d~l~~n~~E~~~l~~~~-~~~~~~~a~~l~~~g~~ 235 (312)
T cd01168 161 EAILLAAEHAKENGVKIALNLSAPFI----VQRFKEALLELLPYVDILFGNEEEAEALAEAE-TTDDLEAALKLLALRCR 235 (312)
T ss_pred HHHHHHHHHHHHcCCEEEEeCCcHHH----HHHHHHHHHHHHhhCCEEEeCHHHHHHHhCCC-CCChHHHHHHHHhcCCC
Confidence 78888999999999999999963210 12334557788999999999999999999852 22334467888889999
Q ss_pred EEEEecCCCceEEEecCceeeecCcc-cccccCCCCchHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHhhHHhhhcC
Q 024908 161 LLIVTEGSKGCRYYTKEFKGRVPGVK-TKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERG 239 (260)
Q Consensus 161 ~vivt~G~~G~~~~~~~~~~~~~~~~-~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~~~~~g 239 (260)
.||||+|++|++++.++..+++|+++ ++++|||||||+|+|||++++++|++ +++|+++|+++|+++|++.|
T Consensus 236 ~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vvDttGAGDaf~ag~l~~l~~g~~-------~~~a~~~a~~~Aa~~v~~~G 308 (312)
T cd01168 236 IVVITQGAKGAVVVEGGEVYPVPAIPVEKIVDTNGAGDAFAGGFLYGLVQGEP-------LEECIRLGSYAAAEVIQQLG 308 (312)
T ss_pred EEEEecCCCCeEEEECCEEEeCCCCCCCCcccCCchHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHhccC
Confidence 99999999999999888888999888 79999999999999999999999999 99999999999999999999
Q ss_pred CCC
Q 024908 240 AIP 242 (260)
Q Consensus 240 ~~~ 242 (260)
+..
T Consensus 309 ~~~ 311 (312)
T cd01168 309 PRL 311 (312)
T ss_pred CCC
Confidence 864
No 13
>PRK15074 inosine/guanosine kinase; Provisional
Probab=100.00 E-value=1.9e-35 Score=254.96 Aligned_cols=238 Identities=18% Similarity=0.223 Sum_probs=187.5
Q ss_pred HHHHHH--HCCCCCCceEEcCCCCceEEEEEEccCCceeEEEeeCCcccccccccccchhhhcCccEEEEccccCC---C
Q 024908 2 LANILK--ENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLI---A 76 (260)
Q Consensus 2 i~~~l~--~~gi~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~---~ 76 (260)
+++.|+ +.||+++++...+ .+|+.++++++++|+|+++.+ .+++..+++++++...+++++++|++++.+. .
T Consensus 126 ~~~~L~~~~~GVdt~~v~~~~-~~TG~~~VlV~~dGeRt~~t~--~GA~~~Lt~edld~~~i~~a~ilyl~Gy~l~~~~~ 202 (434)
T PRK15074 126 AYRYLCNTSSRTDLNYLQGVD-GPIGRCFTLISEDGERTFAIS--PGHMNQLRPESIPEDVIAGASALVLTAYLVRCKPG 202 (434)
T ss_pred HHHHhhhhhCCccCcceEEcC-CCCEEEEEEECCCCCEEEEEe--cChhhcCChhHCCHhHhccCCEEEEeeeehhcccC
Confidence 466776 6899999986554 589999999999999999988 4677788999898888999999999998664 2
Q ss_pred chhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCCCCCchHHHHHHhcC
Q 024908 77 EPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFH 156 (260)
Q Consensus 77 ~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~~~~~~~~~~~~l~~ 156 (260)
+...+....+++.|++.|+++++|++.+..++..... +...+++++|++++|++|+..++|..+.++ +++.+.+
T Consensus 203 ~~~~~a~~~al~~Ake~G~~VslD~s~~~~v~~~~~~---~~e~l~~~vDILf~NeeEa~~LtG~~d~ee---a~~~L~~ 276 (434)
T PRK15074 203 EPMPEATMKAIEYAKKHNVPVVLTLGTKFVIEDNPQW---WQEFLKEHVSILAMNEDEAEALTGESDPLL---ASDKALD 276 (434)
T ss_pred CCcHHHHHHHHHHHHHcCCEEEEECcchhhccccHHH---HHHHHHhcCCEEEcCHHHHHHHhCCCCHHH---HHHHHHc
Confidence 2345788889999999999999999876554432222 223456799999999999999998754443 4455654
Q ss_pred CCCeEEEEecCCCceEEEecCc-------e--------------------------------eeecCc---ccccccCCC
Q 024908 157 PNLKLLIVTEGSKGCRYYTKEF-------K--------------------------------GRVPGV---KTKAVDTTG 194 (260)
Q Consensus 157 ~g~~~vivt~G~~G~~~~~~~~-------~--------------------------------~~~~~~---~~~~vdt~G 194 (260)
+++.||||+|++|+++...++ . .++|++ +++++||||
T Consensus 277 -~~~~VVVTlG~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vDttG 355 (434)
T PRK15074 277 -WVDLVLCTAGPIGLYMAGYTEDEAKRETQHPLLPGAIAEFNRYEFSRAMRKKDCQNPLRVYSHIAPYMGGPEKIMNTNG 355 (434)
T ss_pred -CCCEEEEEECCCCEEEEecccccccCceeeeccccccccccchhcccchhccccccccccccccCcccCCCCcceeCCC
Confidence 579999999999999965221 1 277777 678999999
Q ss_pred CchHHHHHHHHHHHhcC-cc------------cccHHHHHHHHHHHHHHhhHHhhhcCC--CCCCCCHHH
Q 024908 195 AGDSFVSGILNCLAADQ-NL------------IKDENRLREALLFANACGALTVTERGA--IPALPTKEA 249 (260)
Q Consensus 195 aGDaf~Ag~~~~l~~g~-~~------------~~~~~~~~~a~~~a~~~Aa~~~~~~g~--~~~~~~~~~ 249 (260)
|||+|+|||+|+|.+|+ +. +....++.+|+++|+++|+.++++.|+ ..++|+.++
T Consensus 356 AGD~f~~gfl~~l~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~vi~~~G~~~~~~~p~~~~ 425 (434)
T PRK15074 356 AGDGALSALLHDITANSYHRSNVPNSSKHKRTYLTYSSLAQVCKYANRVSYEVLNQHSPRLSRGLPERED 425 (434)
T ss_pred cHHHHHHHHHHHHHCCCcccccccccccccccccccCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccc
Confidence 99999999999999997 00 000012999999999999999999999 667887764
No 14
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=100.00 E-value=3.5e-35 Score=244.98 Aligned_cols=222 Identities=33% Similarity=0.425 Sum_probs=187.6
Q ss_pred CHHHHHHHCCCCCCceEEcCCCCceEEEEEEccCCceeEEEeeCCcccccccccccch--hhhcCccEEEEccccCCCch
Q 024908 1 MLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDK--NLIKQGSIFHYGSISLIAEP 78 (260)
Q Consensus 1 ~i~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~v~~~~~~~~~~~ 78 (260)
+|++.|+++||+++++.+.++.+|+++++.++.+|+++++.+ .+++..++++.++. ..+++++++++++. .
T Consensus 67 ~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~ 139 (292)
T cd01174 67 ELLENLREEGIDVSYVEVVVGAPTGTAVITVDESGENRIVVV--PGANGELTPADVDAALELIAAADVLLLQLE-----I 139 (292)
T ss_pred HHHHHHHHcCCCceEEEEcCCCCceeEEEEEcCCCceEEEEe--CCCCCCCCHHHHHHHHHhcccCCEEEEeCC-----C
Confidence 378899999999999988888899999999998899999877 34555566555543 45789999988752 2
Q ss_pred hHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCCCCC--chHHHHHHhcC
Q 024908 79 CRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHN--DDNVVLEKLFH 156 (260)
Q Consensus 79 ~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~~~~--~~~~~~~~l~~ 156 (260)
+.+.+..+++.+++.+.++++|+..... ...++++++|++++|.+|++.+++....+ +..++++.+.+
T Consensus 140 ~~~~~~~~~~~a~~~g~~v~~D~~~~~~----------~~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~ 209 (292)
T cd01174 140 PLETVLAALRAARRAGVTVILNPAPARP----------LPAELLALVDILVPNETEAALLTGIEVTDEEDAEKAARLLLA 209 (292)
T ss_pred CHHHHHHHHHHHHhcCCEEEEeCCCcCc----------CcHHHHhhCCEEeeCHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 4567888999999999999999974322 12567889999999999999999876443 23346788888
Q ss_pred CCCeEEEEecCCCceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHhhHHhh
Q 024908 157 PNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVT 236 (260)
Q Consensus 157 ~g~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~~~ 236 (260)
.|++.|+||+|.+|+++++++..+++|+++++++||+||||+|+|||++++++|++ +++|+++|+++|+.+++
T Consensus 210 ~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGD~F~ag~l~~l~~g~~-------~~~al~~a~~~Aa~~~~ 282 (292)
T cd01174 210 KGVKNVIVTLGAKGALLASGGEVEHVPAFKVKAVDTTGAGDTFIGALAAALARGLS-------LEEAIRFANAAAALSVT 282 (292)
T ss_pred cCCCEEEEEeCCCceEEEeCCceEEecCCCcccCCCCCcHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhc
Confidence 99999999999999999988888888988889999999999999999999999999 99999999999999999
Q ss_pred hcCCCCCCCC
Q 024908 237 ERGAIPALPT 246 (260)
Q Consensus 237 ~~g~~~~~~~ 246 (260)
+.|+..++|+
T Consensus 283 ~~G~~~~~~~ 292 (292)
T cd01174 283 RPGAQPSIPT 292 (292)
T ss_pred CcCCCCCCCC
Confidence 9999988774
No 15
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=2.8e-35 Score=251.46 Aligned_cols=236 Identities=25% Similarity=0.270 Sum_probs=187.0
Q ss_pred CHHHHHHHCCCCCCceEEcCCCCceEEEEEEccCCceeEEEeeCCcccccccccccchhhhcCccEEEEccccCCCchhH
Q 024908 1 MLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCR 80 (260)
Q Consensus 1 ~i~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~ 80 (260)
++++.|++.||+++++.+ .+.+|+.++++++++|+|++..+ .+....++.+++....+++++++|++ +... +.
T Consensus 118 ~~~~~L~~~GI~~~~~~~-~~~~Tg~~~v~v~~dgert~~~~--lg~~~~l~~~~~~~~~~~~~~~v~v~-~~~~---~~ 190 (367)
T PLN02379 118 LFVSNMGFSGVDLSRLRA-KKGPTAQCVCLVDALGNRTMRPC--LSSAVKLQADELTKEDFKGSKWLVLR-YGFY---NL 190 (367)
T ss_pred HHHHHHHHcCCCccCccc-CCCCCceEEEEECCCCCccccCC--ccccccCChhHCCHHHHhcCCEEEEE-cccC---CH
Confidence 368899999999988755 34589999999999999988654 34555677777877788999999999 4332 35
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhh--hCCEEecCHHHHhhhcCCCCCCchHHHHHHhcCCC
Q 024908 81 STQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWD--QADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPN 158 (260)
Q Consensus 81 ~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~--~~dvl~~n~~E~~~l~g~~~~~~~~~~~~~l~~~g 158 (260)
+.+.++++.|++.|+++++|++....+ ...++.+.++++ ++|++++|++|+..+++....+....+ ..+++.+
T Consensus 191 ~~~~~~~~~A~~~g~~v~lD~s~~~~v----~~~r~~l~~ll~~~~vDilf~Ne~Ea~~l~~~~~~~~~~~~-~~~l~~~ 265 (367)
T PLN02379 191 EVIEAAIRLAKQEGLSVSLDLASFEMV----RNFRSPLLQLLESGKIDLCFANEDEARELLRGEQESDPEAA-LEFLAKY 265 (367)
T ss_pred HHHHHHHHHHHHcCCEEEEeccchhhh----hhhhHHHHHHhhcCCccEEEcCHHHHHHHhcCCCCCCHHHH-HHHHHhc
Confidence 788889999999999999999743321 123445666664 899999999999999875322222223 3455678
Q ss_pred CeEEEEecCCCceEEEecCceeeecCcc-cccccCCCCchHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHhhHHhhh
Q 024908 159 LKLLIVTEGSKGCRYYTKEFKGRVPGVK-TKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTE 237 (260)
Q Consensus 159 ~~~vivt~G~~G~~~~~~~~~~~~~~~~-~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~~~~ 237 (260)
++.++||+|++|++++.+++.+++|+++ .+++|||||||+|+|||+++|.+|++ +++|+++|+++|+.+|++
T Consensus 266 ~~~vvvT~G~~Ga~~~~~~~~~~v~a~~~~~vVDTtGAGDaFaagfl~gl~~G~~-------l~~a~~~g~~aAa~vi~~ 338 (367)
T PLN02379 266 CNWAVVTLGSKGCIARHGKEVVRVPAIGETNAVDATGAGDLFASGFLYGLIKGLS-------LEECCKVGACSGGSVVRA 338 (367)
T ss_pred CCEEEEEECCCCeEEEECCEEEEecCCCCCCcccCCChhHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHHhc
Confidence 9999999999999999988888999886 47999999999999999999999999 999999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHh
Q 024908 238 RGAIPALPTKEAALKLLH 255 (260)
Q Consensus 238 ~g~~~~~~~~~~l~~~~~ 255 (260)
.|+.....+++++.+.++
T Consensus 339 ~G~~~~~~~~~~~~~~~~ 356 (367)
T PLN02379 339 LGGEVTPENWQWMYKQMQ 356 (367)
T ss_pred cCCCCChHHHHHHHHHHH
Confidence 998754444445555444
No 16
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=1.4e-34 Score=241.06 Aligned_cols=222 Identities=22% Similarity=0.314 Sum_probs=180.2
Q ss_pred CHHHHHHHCCCCCCceEEcCCCCceEEEEEEccCCceeEEEeeCCcccccccccccchhhhcCccEEEEccccCCCc-hh
Q 024908 1 MLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAE-PC 79 (260)
Q Consensus 1 ~i~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~-~~ 79 (260)
++++.|++.||+++++.+. +.+|+.++++++.+|+|+++.++ +++..++++.++...+.+++++|++++.+... .+
T Consensus 66 ~i~~~l~~~gi~~~~~~~~-~~~t~~~~~~~~~~g~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (289)
T cd01944 66 QIRQAMRDEGIEILLPPRG-GDDGGCLVALVEPDGERSFISIS--GAEQDWSTEWFATLTVAPYDYVYLSGYTLASENAS 142 (289)
T ss_pred HHHHHHHHcCCcccccccc-CCCCeEEEEEEcCCCceEEEEeC--CccCCCCHHHhccccCCCCCEEEEeCccccCcchh
Confidence 4789999999999988765 56888888888889999988774 44445666666544578899999998765432 24
Q ss_pred HHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCCCCCchHHHHHHhcCCCC
Q 024908 80 RSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNL 159 (260)
Q Consensus 80 ~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~~~~~~~~~~~~l~~~g~ 159 (260)
.+.+..+++.++ .+.++++|++++...|. ...+.++++++|++++|.+|++.++|....++ ...++.+.+.++
T Consensus 143 ~~~~~~~~~~~~-~~~~v~~D~~~~~~~~~-----~~~~~~~l~~~d~~~~n~~E~~~l~g~~~~~~-~~~~~~~~~~~~ 215 (289)
T cd01944 143 KVILLEWLEALP-AGTTLVFDPGPRISDIP-----DTILQALMAKRPIWSCNREEAAIFAERGDPAA-EASALRIYAKTA 215 (289)
T ss_pred HHHHHHHHHhcc-CCCEEEEcCcccccccC-----HHHHHHHHhcCCEEccCHHHHHHHhCCCCcch-HHHHHHHHhccC
Confidence 566667776644 56889999987766553 34577888999999999999999999765433 234567778899
Q ss_pred eEEEEecCCCceEEEec-CceeeecCcccccccCCCCchHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHhhHHhhhc
Q 024908 160 KLLIVTEGSKGCRYYTK-EFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTER 238 (260)
Q Consensus 160 ~~vivt~G~~G~~~~~~-~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~~~~~ 238 (260)
+.|+||+|++|++++.+ +..+++|+++++++||+||||+|+|||++++.+|++ +++|+++|+++|+.++++.
T Consensus 216 ~~vvvt~G~~Ga~~~~~~~~~~~~~~~~~~vvDt~GAGDaf~ag~l~~~~~g~~-------~~~a~~~a~a~aa~~~~~~ 288 (289)
T cd01944 216 APVVVRLGSNGAWIRLPDGNTHIIPGFKVKAVDTIGAGDTHAGGMLAGLAKGMS-------LADAVLLANAAAAIVVTRS 288 (289)
T ss_pred CeEEEEECCCcEEEEecCCCeEEecCCCCCCccCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHhhhccC
Confidence 99999999999999984 456778888889999999999999999999999999 9999999999999999987
Q ss_pred C
Q 024908 239 G 239 (260)
Q Consensus 239 g 239 (260)
|
T Consensus 289 G 289 (289)
T cd01944 289 G 289 (289)
T ss_pred C
Confidence 6
No 17
>PTZ00247 adenosine kinase; Provisional
Probab=100.00 E-value=8.2e-35 Score=247.99 Aligned_cols=225 Identities=20% Similarity=0.246 Sum_probs=181.5
Q ss_pred CHHHHHHHCCCCCCceEEcCCCCceEEEEEEccCCceeEEEeeCCcccccccccccch----hhhcCccEEEEccccCCC
Q 024908 1 MLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDK----NLIKQGSIFHYGSISLIA 76 (260)
Q Consensus 1 ~i~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~d~v~~~~~~~~~ 76 (260)
++++.|+++||+++++. .++.+|++++++++. |+|+++.+ .+++..+++++++. ..+++++++|++++.+.
T Consensus 97 ~i~~~l~~~GVd~~~~~-~~~~~Tg~~~i~v~~-~~r~~~~~--~ga~~~l~~~~i~~~~~~~~l~~~~~v~~~g~~~~- 171 (345)
T PTZ00247 97 ILKEAAEKDGVEMLFEY-TTKAPTGTCAVLVCG-KERSLVAN--LGAANHLSAEHMQSHAVQEAIKTAQLYYLEGFFLT- 171 (345)
T ss_pred HHHHHHHHcCCeeeccc-cCCCCcEEEEEEEcC-CCcccccC--cchhhcCChHHcCcHHHHHHHhhCCEEEEEEEEec-
Confidence 47889999999998875 567799999998864 78888765 56667788777764 26789999999986443
Q ss_pred chhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCC--CCCchHHHHHHh
Q 024908 77 EPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGD--DHNDDNVVLEKL 154 (260)
Q Consensus 77 ~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~--~~~~~~~~~~~l 154 (260)
.+.+....+++.+++.|+++++|+..+.. .......+.++++++|++++|.+|++.++|.. ..++..++++.+
T Consensus 172 -~~~~~~~~~~~~a~~~g~~v~~d~~~~~~----~~~~~~~~~~~l~~~Dil~~N~~Ea~~l~g~~~~~~~~~~~~~~~l 246 (345)
T PTZ00247 172 -VSPNNVLQVAKHARESGKLFCLNLSAPFI----SQFFFERLLQVLPYVDILFGNEEEAKTFAKAMKWDTEDLKEIAARI 246 (345)
T ss_pred -ccHHHHHHHHHHHHHcCCEEEEECCcHHH----HHHHHHHHHHHHhhCCEEEeCHHHHHHHhhccCCCccCHHHHHHHH
Confidence 24578889999999999999999853211 11233457788999999999999999999832 112333455555
Q ss_pred cC------CCCeEEEEecCCCceEEEecCceeeecCccc---ccccCCCCchHHHHHHHHHHHhcCcccccHHHHHHHHH
Q 024908 155 FH------PNLKLLIVTEGSKGCRYYTKEFKGRVPGVKT---KAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALL 225 (260)
Q Consensus 155 ~~------~g~~~vivt~G~~G~~~~~~~~~~~~~~~~~---~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~ 225 (260)
.+ .+++.||||+|++|+++++++..+++|++++ +++|||||||+|+|||+++|.+|++ +++|++
T Consensus 247 ~~~~~~~~~~~~~vvvT~G~~G~~~~~~~~~~~~~~~~v~~~~vVDTtGAGDaF~agfl~~l~~g~~-------~~~al~ 319 (345)
T PTZ00247 247 AMLPKYSGTRPRLVVFTQGPEPTLIATKDGVTSVPVPPLDQEKIVDTNGAGDAFVGGFLAQYANGKD-------IDRCVE 319 (345)
T ss_pred HhccccccCCCCEEEEecCCCceEEEECCEEEEEeccccCCCCccCCCChHHHHHHHHHHHHHcCCC-------HHHHHH
Confidence 42 3578999999999999999988888888776 5899999999999999999999999 999999
Q ss_pred HHHHHhhHHhhhcCCCC
Q 024908 226 FANACGALTVTERGAIP 242 (260)
Q Consensus 226 ~a~~~Aa~~~~~~g~~~ 242 (260)
+|+++|+.+|++.|+..
T Consensus 320 ~a~~aAa~~v~~~Ga~~ 336 (345)
T PTZ00247 320 AGHYSAQVIIQHNGCTY 336 (345)
T ss_pred HHHHHHHHHHhccCCCC
Confidence 99999999999999873
No 18
>PRK09850 pseudouridine kinase; Provisional
Probab=100.00 E-value=2.1e-34 Score=242.50 Aligned_cols=235 Identities=17% Similarity=0.206 Sum_probs=188.1
Q ss_pred CHHHHHHHCCCCCCceEEcCCCCceEEEEEEccCCceeEEEeeCCcccccccccccc--hhhhcCccEEEEccccCCCch
Q 024908 1 MLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELD--KNLIKQGSIFHYGSISLIAEP 78 (260)
Q Consensus 1 ~i~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~v~~~~~~~~~~~ 78 (260)
++++.|++.||+++++.+.++.+|++++++++++|++.+.+.+ .+....++.+.+. .+.+++++++++++. .
T Consensus 71 ~i~~~l~~~gVd~~~~~~~~~~~T~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~ 144 (313)
T PRK09850 71 SLLTQTNQSGVYVDKCLIVPGENTSSYLSLLDNTGEMLVAIND-MNISNAITAEYLAQHREFIQRAKVIVADCN-----I 144 (313)
T ss_pred HHHHHHHHcCCCchheeecCCCCceEEEEEecCCCCEEEEecC-chHhhhCCHHHHHHHHHHHhcCCEEEEeCC-----C
Confidence 3688999999999998888888899999999999998887642 3344445544443 245788999987652 2
Q ss_pred hHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCCC--CCchHHHHHHhcC
Q 024908 79 CRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDD--HNDDNVVLEKLFH 156 (260)
Q Consensus 79 ~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~~--~~~~~~~~~~l~~ 156 (260)
+.+....+++++ .++++++||... | ....+.++++++|++++|.+|+..++|... .++...+++.+.+
T Consensus 145 ~~~~~~~~~~~~--~g~~v~~D~~~~---~-----~~~~~~~~l~~~dil~~N~~Ea~~l~g~~~~~~~~~~~~~~~l~~ 214 (313)
T PRK09850 145 SEEALAWILDNA--ANVPVFVDPVSA---W-----KCVKVRDRLNQIHTLKPNRLEAETLSGIALSGREDVAKVAAWFHQ 214 (313)
T ss_pred CHHHHHHHHHhc--cCCCEEEEcCCH---H-----HHHHHHhhhccceEEccCHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 345566666543 478999998631 1 123456778899999999999999998542 2334456677878
Q ss_pred CCCeEEEEecCCCceEEEecC-ceeeecCcccccccCCCCchHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHhhHHh
Q 024908 157 PNLKLLIVTEGSKGCRYYTKE-FKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTV 235 (260)
Q Consensus 157 ~g~~~vivt~G~~G~~~~~~~-~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~~ 235 (260)
.|++.||||+|++|++++.++ ...++|+++++++|||||||+|+|||+++|.+|++ +++|+++|+++|+.++
T Consensus 215 ~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~agfi~~l~~g~~-------~~eal~~a~a~aa~~~ 287 (313)
T PRK09850 215 HGLNRLVLSMGGDGVYYSDISGESGWSAPIKTNVINVTGAGDAMMAGLASCWVDGMP-------FAESVRFAQGCSSMAL 287 (313)
T ss_pred cCCCEEEEEeCCceEEEEcCCCCeEecCCCCcccccCCCcHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHh
Confidence 999999999999999999754 55677888889999999999999999999999999 9999999999999999
Q ss_pred hhcCCCCCCCCHHHHHHHHhhcc
Q 024908 236 TERGAIPALPTKEAALKLLHTVA 258 (260)
Q Consensus 236 ~~~g~~~~~~~~~~l~~~~~~~~ 258 (260)
++.+.....|++++|+++++..+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~ 310 (313)
T PRK09850 288 SCEYTNNPDLSIANVISLVENAE 310 (313)
T ss_pred cCCCCCCcccCHHHHHHHHHHhh
Confidence 99999999999999999988654
No 19
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.9e-34 Score=233.02 Aligned_cols=249 Identities=54% Similarity=0.856 Sum_probs=216.1
Q ss_pred HHHHHHHCCCCCCceEEcCCCCceEEEEEEccCCceeEEEeeCCcccccccccccchhhhcCccEEEEccccCCCchhHH
Q 024908 2 LANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRS 81 (260)
Q Consensus 2 i~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~ 81 (260)
+++.|+++||+++++..+.+.+|++..+.+..+|++++..++.+..++...+.++..+.++.+.++|+++..+.......
T Consensus 78 l~~~L~~~~V~~~~v~~~~~~~T~~a~i~v~~dG~~~~~~v~gan~~~~~~~se~~~~~i~~ak~~~~q~ei~~~~~~~s 157 (330)
T KOG2855|consen 78 LLDILKQNGVDTSGVKFDENARTACATITVSKDGENRIIFVRGANADMLPEDSELNLEVIKEAKVFHCQSEILIEEPMRS 157 (330)
T ss_pred HHHHHhhCCcccccceecCCCceEEEEEEEccCCceEEEEEecCchhcCcccccccHHHHhhccEEEEeeecCCcchhHH
Confidence 67889999999999999999999999999999999999999777777666667777899999999999988887765555
Q ss_pred HHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCCCCCchHHHHHHhcCCCCeE
Q 024908 82 TQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLKL 161 (260)
Q Consensus 82 ~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~~~~~~~~~~~~l~~~g~~~ 161 (260)
.....++.++..+..+.+||+.+..+|++....+..+..++..+|+++++.+|+..++|....+ .. .|+..+.|.
T Consensus 158 ~~~~~~~~~~~~g~~i~~~pn~~l~l~~~~~~ne~e~~~i~~~adv~~~s~~e~~fl~~~~~~~----~~-~L~~~~~k~ 232 (330)
T KOG2855|consen 158 LHIAAVKVAKNAGPAIFYDPNLRLPLWDSLEENESEIASIWNMADVIKVSSQELAFLTGIEDDK----IL-KLWHMKLKL 232 (330)
T ss_pred HHHhhhhhhhcccccccCCCCccccccccccccHHHHHHHhhhhhcccccHHHHHHhccCccch----HH-HHhccCCCE
Confidence 5555566778888778889999999998877777778889999999999999999999883222 23 777788899
Q ss_pred EEEecCCCceEEEecCce-eeecCcccccccCCCCchHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHhhHHhhhcCC
Q 024908 162 LIVTEGSKGCRYYTKEFK-GRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGA 240 (260)
Q Consensus 162 vivt~G~~G~~~~~~~~~-~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~~~~~g~ 240 (260)
||||+|++|+.+++++.. .++|++++++||||||||+|+|||+.+|.+| +..- ...+++++++|+++++.+++..|+
T Consensus 233 viVTlG~kG~~y~tk~~~~~~v~~~~V~~VDtTGAGDsFvgal~~~L~~~-~~~~-~~~L~~~l~~A~a~~ai~v~~~Ga 310 (330)
T KOG2855|consen 233 VIVTLGEKGCRYYTKDFKGSHVPAFKVKAVDTTGAGDSFVGALAVQLVRG-SLLP-ELSLEEALRFANACGAITVQRKGA 310 (330)
T ss_pred EEEEeCCCceEEEecCCCCCCCCCcccccccCCCchHHHHHHHHHHHhhc-cccc-hHHHHHHHHHHHHhhhHHhhccCC
Confidence 999999999999999844 4899999999999999999999999999999 4322 677999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhhc
Q 024908 241 IPALPTKEAALKLLHTV 257 (260)
Q Consensus 241 ~~~~~~~~~l~~~~~~~ 257 (260)
++.+|+.++++..+..-
T Consensus 311 ~~s~p~~~~~~~~~~~~ 327 (330)
T KOG2855|consen 311 IPSMPTEKEVQSLLKSS 327 (330)
T ss_pred CccCccHHHHHHHhhhc
Confidence 99999999999887653
No 20
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=100.00 E-value=3.5e-35 Score=245.88 Aligned_cols=229 Identities=36% Similarity=0.494 Sum_probs=194.8
Q ss_pred CHHHHHHHCCCCCCceEEcCCCCceEEEEEEccCCceeEEEeeCCcccccccccccchhhhcCccEEEEccccCCCchhH
Q 024908 1 MLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCR 80 (260)
Q Consensus 1 ~i~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~ 80 (260)
++++.|++.||+++++.+.++.+|+.+++.++++|+|++..+. +....+..+.+....+.+.+++|+++..+..+.+.
T Consensus 67 ~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (301)
T PF00294_consen 67 IILEELKERGVDTSYIPRDGDEPTGRCLIIVDPDGERTFVFSP--GANSDLTPDELDEEAIDEADILHLSGVSLPEGIPE 144 (301)
T ss_dssp HHHHHHHHTTEEETTEEEESSSEEEEEEEEEETTSEEEEEEEE--GGGGGGGHHHHHHHHHHTESEEEEESGHCSTTSHH
T ss_pred hhhhccccccccccccccccccccceeEeeecccccceeeecc--ccccccccccccccccccccceeeccccccccccc
Confidence 3688999999999999988888999999999999999998873 44445666666677889999999999445666777
Q ss_pred HHHHHHHHHHHHCC--CeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCC--CCCchHHHHHHhcC
Q 024908 81 STQLAAMNLAKESG--SILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGD--DHNDDNVVLEKLFH 156 (260)
Q Consensus 81 ~~~~~~~~~a~~~~--~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~--~~~~~~~~~~~l~~ 156 (260)
+....+.+.+++.+ .+++.++. .....+.+.++++++|++++|.+|+..+++.. +.++....++.+..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~ 216 (301)
T PF00294_consen 145 DLLEALAKAAKKNGPFDPVFRDPS--------WDDLREDLKELLPYADILKPNEEEAEALTGSKIDDPEDALAALRELQA 216 (301)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEGGG--------SHHHHHHHHHHHHTSSEEEEEHHHHHHHHTCSTSSHHHHHHHHHHHHH
T ss_pred ceeeeccccccccccccccccccc--------ccccchhhhhhccccchhccccccccccccccccchhhhhccccccch
Confidence 88888888888877 45555553 11256778888899999999999999999988 55555566677777
Q ss_pred CCCeEEEEecCCCceEEEecCceeeecC-cccccccCCCCchHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHhhHHh
Q 024908 157 PNLKLLIVTEGSKGCRYYTKEFKGRVPG-VKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTV 235 (260)
Q Consensus 157 ~g~~~vivt~G~~G~~~~~~~~~~~~~~-~~~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~~ 235 (260)
.|++.++||+|++|+++++++..+++++ ++.+++|||||||+|+|||++++.+|++ +++|+++|+++|+.++
T Consensus 217 ~g~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~A~~i~~l~~~~~-------~~~a~~~a~~~aa~~v 289 (301)
T PF00294_consen 217 RGVKIVIVTLGEDGALYYTNDESYHVPPVPPVNVVDTTGAGDAFAAGFIYGLLSGMS-------LEEALKFANAAAALKV 289 (301)
T ss_dssp TTSSEEEEEEGGGEEEEEETTEEEEEEEESSSSSSSCTTHHHHHHHHHHHHHHTTHH-------HHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccccCcccccccccccccccccccccceeccchhhhHHHHHHHHcCCC-------HHHHHHHHHHHHHHHh
Confidence 9999999999999999999988999988 4679999999999999999999999999 9999999999999999
Q ss_pred hhcCCCCCCCC
Q 024908 236 TERGAIPALPT 246 (260)
Q Consensus 236 ~~~g~~~~~~~ 246 (260)
++.|+..++|+
T Consensus 290 ~~~g~~~~~p~ 300 (301)
T PF00294_consen 290 QQPGPRSPLPT 300 (301)
T ss_dssp TSSSSSGGTT-
T ss_pred CCCCCcCCCCC
Confidence 99999988886
No 21
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=100.00 E-value=3.2e-34 Score=239.30 Aligned_cols=228 Identities=32% Similarity=0.421 Sum_probs=189.6
Q ss_pred CHHHHHHHCCCCCCceEEcCCCCceEEEEEEccCCceeEEEeeCCcccccccccccc--hhhhcCccEEEEccccCCCch
Q 024908 1 MLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELD--KNLIKQGSIFHYGSISLIAEP 78 (260)
Q Consensus 1 ~i~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~v~~~~~~~~~~~ 78 (260)
++++.|++.||+++++.+.++.+|++++++++.+|+++++.+ .+++..+.++++. .+.+.++|++++++ +.
T Consensus 62 ~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 134 (293)
T TIGR02152 62 ELLENLKSNGIDTEYVGTVKDTPTGTAFITVDDTGENRIVVV--AGANAELTPEDIDAAEALIAESDIVLLQL-----EI 134 (293)
T ss_pred HHHHHHHHcCCCeeEEEEcCCCCCceEEEEEcCCCCEEEEEE--CCcCCcCCHHHHHHHHhhhccCCEEEEec-----CC
Confidence 367899999999999988888899999999988899988876 3455556666665 24578899987763 23
Q ss_pred hHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCC--CCCchHHHHHHhcC
Q 024908 79 CRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGD--DHNDDNVVLEKLFH 156 (260)
Q Consensus 79 ~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~--~~~~~~~~~~~l~~ 156 (260)
+.+.+..+++.+++.+.++++|++.... ....++++++|++++|.+|+..+++.. +.++..++++.+.+
T Consensus 135 ~~~~~~~~~~~~~~~~~~v~~D~~~~~~---------~~~~~~~~~~d~l~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~ 205 (293)
T TIGR02152 135 PLETVLEAAKIAKKHGVKVILNPAPAIK---------DLDDELLSLVDIITPNETEAEILTGIEVTDEEDAEKAAEKLLE 205 (293)
T ss_pred CHHHHHHHHHHHHHcCCEEEEECCcCcc---------cchHHHHhcCCEEccCHHHHHHHhCCCCCCcchHHHHHHHHHH
Confidence 4567888999999999999999864311 112467889999999999999998875 23334456677888
Q ss_pred CCCeEEEEecCCCceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHhhHHhh
Q 024908 157 PNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVT 236 (260)
Q Consensus 157 ~g~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~~~ 236 (260)
.|++.++||+|++|+++++++..+++|+++++++||+||||+|+|||++++.+|++ +++++++|+++|+.+++
T Consensus 206 ~g~~~vvvt~G~~g~~~~~~~~~~~~~~~~~~~vdt~GAGDaf~Ag~l~~l~~g~~-------~~~al~~a~~~Aa~~~~ 278 (293)
T TIGR02152 206 KGVKNVIITLGSKGALLVSKDESKLIPAFKVKAVDTTAAGDTFNGAFAVALAEGKS-------LEDAIRFANAAAAISVT 278 (293)
T ss_pred cCCCeEEEEeCCCceEEEeCCceeEccCCCCceeCCCCcHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHHc
Confidence 89999999999999999988888888888889999999999999999999999999 99999999999999999
Q ss_pred hcCCCCCCCCHHHHH
Q 024908 237 ERGAIPALPTKEAAL 251 (260)
Q Consensus 237 ~~g~~~~~~~~~~l~ 251 (260)
+.|+...+|+.++++
T Consensus 279 ~~G~~~~~~~~~~~~ 293 (293)
T TIGR02152 279 RKGAQSSIPYLEEVE 293 (293)
T ss_pred ccCcccCCCChHHcC
Confidence 999988788887763
No 22
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=100.00 E-value=1.5e-33 Score=234.30 Aligned_cols=216 Identities=26% Similarity=0.304 Sum_probs=178.5
Q ss_pred HHHHHHHCCCCCCceEEcCCCCceEEEEEEccCCceeEEEeeCCcccccccccccchhhhcCccEEEEccccCCCchhHH
Q 024908 2 LANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRS 81 (260)
Q Consensus 2 i~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~ 81 (260)
+++.|++.||+++++...++.+|+++++ ...++++++..+. .....+..++++...+++++++|+++.. .+
T Consensus 68 i~~~l~~~gI~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~i~~~~------~~ 138 (284)
T cd01945 68 ILAELAAEGVDTSFIVVAPGARSPISSI-TDITGDRATISIT--AIDTQAAPDSLPDAILGGADAVLVDGRQ------PE 138 (284)
T ss_pred HHHHHHHcCCCccceeecCCCCCccEEE-EccCCCceEEEec--CCCCCCCcccCCHHHhCcCCEEEEcCCC------HH
Confidence 6889999999999998888888999876 3456777766663 3334466677776678999999998753 24
Q ss_pred HHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCCCCCchHHHHHHhcCCCCeE
Q 024908 82 TQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLKL 161 (260)
Q Consensus 82 ~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~~~~~~~~~~~~l~~~g~~~ 161 (260)
....+++.+++.|.++++|+.+... .. +.++++++|++++|.+|++.+++.... ++++.+.+.+++.
T Consensus 139 ~~~~~~~~~~~~g~~v~~~~~~~~~--------~~-~~~~~~~~dil~~n~~e~~~l~~~~~~----~~~~~l~~~~~~~ 205 (284)
T cd01945 139 AALHLAQEARARGIPIPLDLDGGGL--------RV-LEELLPLADHAICSENFLRPNTGSADD----EALELLASLGIPF 205 (284)
T ss_pred HHHHHHHHHHHcCCCeeEeccCCcc--------cc-hHHHhccCCEEEeChhHHhhhcCCCHH----HHHHHHHhcCCcE
Confidence 6777889999999877776643211 12 667889999999999999999887532 3567777899999
Q ss_pred EEEecCCCceEEEe-cCceeeecCcccccccCCCCchHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHhhHHhhhcCC
Q 024908 162 LIVTEGSKGCRYYT-KEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGA 240 (260)
Q Consensus 162 vivt~G~~G~~~~~-~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~~~~~g~ 240 (260)
||||+|++|++++. ++..+++|+++++++||+||||+|+|||+++|++|++ +++++++|+++|+.++++.|+
T Consensus 206 vivt~G~~G~~~~~~~~~~~~~~~~~~~vvDt~GAGDaf~ag~l~~l~~g~~-------~~~al~~a~~~Aa~~~~~~G~ 278 (284)
T cd01945 206 VAVTLGEAGCLWLERDGELFHVPAFPVEVVDTTGAGDVFHGAFAHALAEGMP-------LREALRFASAAAALKCRGLGG 278 (284)
T ss_pred EEEEECCCCeEEEcCCCCEEecCCCccccccCCCcHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHhccCC
Confidence 99999999999998 6678889988889999999999999999999999999 999999999999999999999
Q ss_pred CCCCCC
Q 024908 241 IPALPT 246 (260)
Q Consensus 241 ~~~~~~ 246 (260)
..++|+
T Consensus 279 ~~~~~~ 284 (284)
T cd01945 279 RAGLPT 284 (284)
T ss_pred cccCCC
Confidence 887774
No 23
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5e-33 Score=225.84 Aligned_cols=231 Identities=25% Similarity=0.344 Sum_probs=193.1
Q ss_pred CHHHHHHHCCCCCCceEEcCCCCceEEEEEEcc-CCceeEEEeeCCcccccccccccch------hhhcCccEEEEcccc
Q 024908 1 MLANILKENNVDTSGVRYDSTARTALAFVTLRA-DGEREFLFFRHPSADMLLCESELDK------NLIKQGSIFHYGSIS 73 (260)
Q Consensus 1 ~i~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~d~v~~~~~~ 73 (260)
+|.+.|++.||..+++.+..++|+++.+. +. +|+.+-+. .+...++.+++.. ..+++.|+|+++| +
T Consensus 66 ~~~~~l~~~gi~~~fv~v~g~TRinvki~--~~~~~~~Tein----~~Gp~is~~~~~~~l~~~~~~l~~~d~VvlsG-S 138 (310)
T COG1105 66 FFVALLKDEGIPDAFVEVKGDTRINVKIL--DEEDGEETEIN----FPGPEISEAELEQFLEQLKALLESDDIVVLSG-S 138 (310)
T ss_pred HHHHHHHhcCCCceEEEccCCCeeeEEEE--ecCCCcEEEec----CCCCCCCHHHHHHHHHHHHHhcccCCEEEEeC-C
Confidence 47889999999999998877766665544 44 44344442 2333477666653 3477899999888 5
Q ss_pred CCCchhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCCCCC--chHHHH
Q 024908 74 LIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHN--DDNVVL 151 (260)
Q Consensus 74 ~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~~~~--~~~~~~ 151 (260)
+....+.+.+.++++.+++.|+++++|.+ +..+...++. .++++|||.+|+..++|.+..+ +..+++
T Consensus 139 lP~g~~~d~y~~li~~~~~~g~~vilD~S--------g~~L~~~L~~---~P~lIKPN~~EL~~~~g~~~~~~~d~i~~a 207 (310)
T COG1105 139 LPPGVPPDAYAELIRILRQQGAKVILDTS--------GEALLAALEA---KPWLIKPNREELEALFGRELTTLEDVIKAA 207 (310)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCeEEEECC--------hHHHHHHHcc---CCcEEecCHHHHHHHhCCCCCChHHHHHHH
Confidence 66677889999999999999999999984 5555555554 5999999999999999987543 455677
Q ss_pred HHhcCCCCeEEEEecCCCceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHh
Q 024908 152 EKLFHPNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACG 231 (260)
Q Consensus 152 ~~l~~~g~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~A 231 (260)
+.++..|+++||||+|++|+++.+++..+++.++++++++|+||||+++|||++++.++++ +++++++|.++|
T Consensus 208 ~~l~~~g~~~ViVSlG~~Gal~~~~~~~~~a~~p~~~vvstVGAGDs~VAGf~~~~~~~~~-------~e~~l~~avA~g 280 (310)
T COG1105 208 RELLAEGIENVIVSLGADGALLVTAEGVYFASPPKVQVVSTVGAGDSMVAGFLAGLLKGKS-------LEEALRFAVACG 280 (310)
T ss_pred HHHHHCCCCEEEEEecCcccEEEccCCeEEEeCCCcceecCcCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHH
Confidence 8889999999999999999999999999999988899999999999999999999999999 999999999999
Q ss_pred hHHhhhcCCCCCCCCHHHHHHHHhhcc
Q 024908 232 ALTVTERGAIPALPTKEAALKLLHTVA 258 (260)
Q Consensus 232 a~~~~~~g~~~~~~~~~~l~~~~~~~~ 258 (260)
++++++.+. +.++.++++++++++.
T Consensus 281 ~a~~~~~~~--~~~~~~~~~~~~~~v~ 305 (310)
T COG1105 281 AAAASQKGT--GIPDLDQLKKIYAQVT 305 (310)
T ss_pred HHHhhcCCC--CCCCHHHHHHHhhheE
Confidence 999999997 6789999999998875
No 24
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=100.00 E-value=3.4e-33 Score=234.28 Aligned_cols=229 Identities=25% Similarity=0.285 Sum_probs=182.2
Q ss_pred HHHHHHHCCCCCCceEEcCCCCceEEEEEEccCCceeEEEeeCCcccccccccccch------hhhcCccEEEEccccCC
Q 024908 2 LANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDK------NLIKQGSIFHYGSISLI 75 (260)
Q Consensus 2 i~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~d~v~~~~~~~~ 75 (260)
+++.|++.||+++++.+.+ .|++++++++.+|+++++.+ .++. ++.+.++. +.+++++++|++++..
T Consensus 66 ~~~~L~~~gId~~~~~~~~--~t~~~~~~~~~~g~~~~~~~--~~~~--~~~~~~~~~~~~~~~~l~~~~~v~~~g~~~- 138 (304)
T TIGR03828 66 IEALLREEGIKTDFVRVPG--ETRINVKIKEPSGTETKLNG--PGPE--ISEEELEALLEKLRAQLAEGDWLVLSGSLP- 138 (304)
T ss_pred HHHHHHHCCCcceEEECCC--CCeeeEEEEeCCCCEEEEEC--CCCC--CCHHHHHHHHHHHHHhccCCCEEEEECCCC-
Confidence 6889999999999887653 46777777777887776644 2222 44433331 2578999999988643
Q ss_pred CchhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCCC--CCchHHHHHH
Q 024908 76 AEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDD--HNDDNVVLEK 153 (260)
Q Consensus 76 ~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~~--~~~~~~~~~~ 153 (260)
...+.+.+..+++.+++.+.++++|++. .. ....+...+|++++|..|++.++|... .++..++++.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~v~~D~~~--------~~---~~~~~~~~~~i~~~n~~E~~~l~g~~~~~~~~~~~~~~~ 207 (304)
T TIGR03828 139 PGVPPDFYAELIALAREKGAKVILDTSG--------EA---LRDGLKAKPFLIKPNDEELEELFGRELKTLEEIIEAARE 207 (304)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEECCh--------HH---HHHHHhcCCcEECcCHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 2234577888999999999999999862 11 112223357899999999999998753 2344456677
Q ss_pred hcCCCCeEEEEecCCCceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHhhH
Q 024908 154 LFHPNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGAL 233 (260)
Q Consensus 154 l~~~g~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~ 233 (260)
+.+.|++.||||+|++|++++.+++.+++++++++++||+||||+|+|||+++|.+|++ +++|+++|+++|+.
T Consensus 208 l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~vvDttGAGDaF~a~~l~~l~~g~~-------~~~a~~~a~~~Aa~ 280 (304)
T TIGR03828 208 LLDLGAENVLISLGADGALLVTKEGALFAQPPKGEVVSTVGAGDSMVAGFLAGLESGLS-------LEEALRLAVAAGSA 280 (304)
T ss_pred HHHcCCCEEEEccCCCCcEEEcCCceEEEeCCCccccCCcChHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHH
Confidence 88899999999999999999988877888888889999999999999999999999999 99999999999999
Q ss_pred HhhhcCCCCCCCCHHHHHHHHhhc
Q 024908 234 TVTERGAIPALPTKEAALKLLHTV 257 (260)
Q Consensus 234 ~~~~~g~~~~~~~~~~l~~~~~~~ 257 (260)
+|++.|+ .+|+.+++++++..+
T Consensus 281 ~~~~~G~--~~p~~~~~~~~~~~~ 302 (304)
T TIGR03828 281 AAFSEGT--GLPDPEDIEELLPQV 302 (304)
T ss_pred HhcCcCC--CCCCHHHHHHHHhcc
Confidence 9999997 479999999988765
No 25
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=7e-33 Score=229.67 Aligned_cols=208 Identities=31% Similarity=0.427 Sum_probs=170.6
Q ss_pred CHHHHHHHCCCCCCceEEcCCCCceEEEEEEccCCceeEEEeeCCcccccccccccchhhhcCccEEEEccccCCCchhH
Q 024908 1 MLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCR 80 (260)
Q Consensus 1 ~i~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~ 80 (260)
++++.|++.||+++++.+.++.+|+.++++++.+|++.+..+ .++...+..++ ....+++++++|+++..
T Consensus 67 ~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------- 136 (279)
T cd01942 67 LYLEELREEGVDTSHVRVVDEDSTGVAFILTDGDDNQIAYFY--PGAMDELEPND-EADPDGLADIVHLSSGP------- 136 (279)
T ss_pred HHHHHHHHcCCCccceEEcCCCCcceEEEEEcCCCCEEEEec--CCcccccccCC-chhhhcccCEEEeCCch-------
Confidence 368899999999999977777889999999888888887755 34554455554 45677899999998753
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHH---hhhcCCCCCCchHHHHHHhcCC
Q 024908 81 STQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEI---TFLTGGDDHNDDNVVLEKLFHP 157 (260)
Q Consensus 81 ~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~---~~l~g~~~~~~~~~~~~~l~~~ 157 (260)
.+..+++.+++.|.++++|++.+...|. .+.+.++++++|++++|.+|+ ..+++..... ...
T Consensus 137 -~~~~~~~~~~~~g~~v~~D~~~~~~~~~-----~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~---------~~~ 201 (279)
T cd01942 137 -GLIELARELAAGGITVSFDPGQELPRLS-----GEELEEILERADILFVNDYEAELLKERTGLSEAE---------LAS 201 (279)
T ss_pred -HHHHHHHHHHHcCCeEEEcchhhhhhcc-----HHHHHHHHhhCCEEecCHHHHHHHHhhcCCChHH---------Hhc
Confidence 3556777788889999999986554442 245677889999999999999 4555543211 127
Q ss_pred CCeEEEEecCCCceEEEecCceeeecCc-ccccccCCCCchHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHhhHHhh
Q 024908 158 NLKLLIVTEGSKGCRYYTKEFKGRVPGV-KTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVT 236 (260)
Q Consensus 158 g~~~vivt~G~~G~~~~~~~~~~~~~~~-~~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~~~ 236 (260)
+++.||||+|++|++++.++..+++|++ +++++||+||||+|+|||+++|++|++ +++|+++|+++|+.+++
T Consensus 202 ~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vvDttGAGDaf~a~~i~~l~~g~~-------l~~al~~a~~~Aa~~~~ 274 (279)
T cd01942 202 GVRVVVVTLGPKGAIVFEDGEEVEVPAVPAVKVVDTTGAGDAFRAGFLYGLLRGYD-------LEESLRLGNLAASLKVE 274 (279)
T ss_pred CCCEEEEEECCCceEEEECCceEEccCcCcCCCcCCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHc
Confidence 8999999999999999998888889887 789999999999999999999999999 99999999999999999
Q ss_pred hcCC
Q 024908 237 ERGA 240 (260)
Q Consensus 237 ~~g~ 240 (260)
++|+
T Consensus 275 ~~G~ 278 (279)
T cd01942 275 RRGA 278 (279)
T ss_pred ccCC
Confidence 9986
No 26
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=100.00 E-value=1.1e-32 Score=231.65 Aligned_cols=231 Identities=19% Similarity=0.222 Sum_probs=179.1
Q ss_pred CHHHHHHHCCCCCCceEEcCCCCceEEEEEEccCCceeEEEeeCCcccccccccccc------hhhhcCccEEEEccccC
Q 024908 1 MLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELD------KNLIKQGSIFHYGSISL 74 (260)
Q Consensus 1 ~i~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~d~v~~~~~~~ 74 (260)
++++.|++ ||+++++.. .+ .|+.++++++ +|+++++.++ ++. +..+... ...++++|++|+++...
T Consensus 66 ~i~~~l~~-gI~~~~~~~-~~-~t~~~~~~~~-~g~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~ 137 (309)
T PRK13508 66 FIAEHLDD-QIKHAFYKI-KG-ETRNCIAILH-EGQQTEILEK--GPE--ISVQEADGFLHHFKQLLESVEVVAISGSLP 137 (309)
T ss_pred HHHHHHHc-CCCceEEEC-CC-CCeeeEEEEe-CCCEEEEECC--CCC--CCHHHHHHHHHHHHHhccCCCEEEEeCCCC
Confidence 47889999 999987654 33 5777777765 6888877653 332 3332221 24578999999988643
Q ss_pred CCchhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCCCC---CchHHHH
Q 024908 75 IAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDH---NDDNVVL 151 (260)
Q Consensus 75 ~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~~~---~~~~~~~ 151 (260)
. ..+.+....+++.+++.|+++++|++. ... ..+...++++|++++|.+|++.++|.+.. ++..+.+
T Consensus 138 ~-~~~~~~~~~~~~~a~~~g~~v~~D~~~--------~~~-~~~~~~~~~~dii~~n~~E~~~l~g~~~~~~~~~~~~~~ 207 (309)
T PRK13508 138 A-GLPVDYYAQLIELANQAGKPVVLDCSG--------AAL-QAVLESPYKPTVIKPNIEELSQLLGKEVSEDLDELKEVL 207 (309)
T ss_pred C-CcCHHHHHHHHHHHHHCCCEEEEECCc--------HHH-HHHHhccCCceEEccCHHHHHHHhCCCCCCCHHHHHHHH
Confidence 2 234567788889999999999999862 111 12222356899999999999999987432 2333455
Q ss_pred HHhcCCCCeEEEEecCCCceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHh
Q 024908 152 EKLFHPNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACG 231 (260)
Q Consensus 152 ~~l~~~g~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~A 231 (260)
+.+...|++.|+||+|++|++++.++..+++|+++++++|||||||+|+|||+++|++|++ +++|+++|+++|
T Consensus 208 ~~~~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaF~Agfi~~l~~g~~-------~~~al~~a~a~a 280 (309)
T PRK13508 208 QQPLFEGIEWIIVSLGADGAFAKHNDTFYKVDIPKIEVVNPVGSGDSTVAGIASGLLHQED-------DADLLKKANVLG 280 (309)
T ss_pred HHHHHcCCCEEEEecCCCceEEEeCCceEEEeCCCccccCCcChhHHHHHHHHHHHHcCCC-------HHHHHHHHHHHH
Confidence 5666789999999999999999988888888888899999999999999999999999999 999999999999
Q ss_pred hHHhhhcCCCCCCCCHHHHHHHHhhcc
Q 024908 232 ALTVTERGAIPALPTKEAALKLLHTVA 258 (260)
Q Consensus 232 a~~~~~~g~~~~~~~~~~l~~~~~~~~ 258 (260)
++++++.+.. ..+.++++++++.++
T Consensus 281 a~~~~~~~~~--~~~~~~~~~~~~~i~ 305 (309)
T PRK13508 281 MLNAQEKQTG--HVNMANYDELYNQIE 305 (309)
T ss_pred HHHhcCcCcC--CCCHHHHHHHHhceE
Confidence 9999999975 578889999988775
No 27
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=100.00 E-value=1.9e-32 Score=230.22 Aligned_cols=233 Identities=21% Similarity=0.254 Sum_probs=181.6
Q ss_pred CHHHHHHHCCCCCCceEEcCCCCceEEEEEEccCCceeEEEeeCCcccccccccccch-----hhhcCccEEEEccccCC
Q 024908 1 MLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDK-----NLIKQGSIFHYGSISLI 75 (260)
Q Consensus 1 ~i~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~d~v~~~~~~~~ 75 (260)
++++.|++.||+++++.+.+.. +...++..+++|++.++++ .+.. ++.+++.. ..+++.+++++++...
T Consensus 68 ~i~~~l~~~gv~~~~~~~~~~~-~~~~~i~~~~~g~~~~~~~--~~~~--~~~~~~~~l~~~~~~~~~~~~~~i~g~~~- 141 (309)
T PRK10294 68 HLVSLLADENVPVATVEAKDWT-RQNLHVHVEASGEQYRFVM--PGAA--LNEDEFRQLEEQVLEIESGAILVISGSLP- 141 (309)
T ss_pred HHHHHHHHcCCCceEEECCCCC-eeeEEEEEcCCCcEEEEEC--CCCC--CCHHHHHHHHHHHHhcCCCCEEEEeCCCC-
Confidence 3788999999999998776554 3344556677788776654 2322 44443332 2367889999988543
Q ss_pred CchhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCCCC--CchHHHHHH
Q 024908 76 AEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDH--NDDNVVLEK 153 (260)
Q Consensus 76 ~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~~~--~~~~~~~~~ 153 (260)
...+.+.+..+++.+++.|+++++|++ .......+ .++++|++++|.+|+..++|.... ++..++++.
T Consensus 142 ~~~~~~~~~~~~~~a~~~g~~v~~D~~--------~~~~~~~~--~~~~~~~i~~n~~E~~~l~g~~~~~~~~~~~a~~~ 211 (309)
T PRK10294 142 PGVKLEKLTQLISAAQKQGIRCIIDSS--------GDALSAAL--AIGNIELVKPNQKELSALVNRDLTQPDDVRKAAQE 211 (309)
T ss_pred CCCCHHHHHHHHHHHHHcCCeEEEeCC--------CHHHHHHH--hcCCCeEECCCHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 344567888999999999999999985 11111111 246899999999999999987532 233456777
Q ss_pred hcCCC-CeEEEEecCCCceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHhh
Q 024908 154 LFHPN-LKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGA 232 (260)
Q Consensus 154 l~~~g-~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa 232 (260)
+++.+ ++.|+||+|.+|++++.+++.+++++++++++||+||||+|+|||+++|.+|++ +++|+++|+++|+
T Consensus 212 l~~~~~~~~vvvT~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaf~ag~l~~l~~g~~-------~~~al~~a~a~aa 284 (309)
T PRK10294 212 LVNSGKAKRVVVSLGPQGALGVDSENCIQVVPPPVKSQSTVGAGDSMVGAMTLKLAENAS-------LEEMVRFGVAAGS 284 (309)
T ss_pred HHHcCCCCEEEEecCCCceEEEcCCccEEEeCCCcccCCCcchHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHH
Confidence 87766 899999999999999988877788888889999999999999999999999999 9999999999999
Q ss_pred HHhhhcCCCCCCCCHHHHHHHHhhcc
Q 024908 233 LTVTERGAIPALPTKEAALKLLHTVA 258 (260)
Q Consensus 233 ~~~~~~g~~~~~~~~~~l~~~~~~~~ 258 (260)
+++++.|+.+ .+.++++++++++.
T Consensus 285 ~~v~~~G~~~--~~~~~~~~~~~~~~ 308 (309)
T PRK10294 285 AATLNQGTRL--CSHDDTQKIYAYLS 308 (309)
T ss_pred HHhcCCCCCC--CCHHHHHHHHHHhc
Confidence 9999999863 68888888887653
No 28
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=100.00 E-value=4.2e-32 Score=227.62 Aligned_cols=229 Identities=26% Similarity=0.314 Sum_probs=182.0
Q ss_pred HHHHHHHCCCCCCceEEcCCCCceEEEEEEccCCceeEEEeeCCcccccccccccch------hhhcCccEEEEccccCC
Q 024908 2 LANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDK------NLIKQGSIFHYGSISLI 75 (260)
Q Consensus 2 i~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~d~v~~~~~~~~ 75 (260)
+++.|++.||+++++...+ .|++++++.+.+|++..+.+ .+. .++.++++. +.+++++++|+++...
T Consensus 66 i~~~l~~~gI~~~~i~~~~--~t~~~~~~~~~~g~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~- 138 (303)
T TIGR03168 66 IEALLAEEGIKNDFVEVKG--ETRINVKIKESSGEETELNE--PGP--EISEEELEQLLEKLRELLASGDIVVISGSLP- 138 (303)
T ss_pred HHHHHHHcCCCceEEECCC--CCEEeEEEEeCCCCEEEEeC--cCC--CCCHHHHHHHHHHHHHhccCCCEEEEeCCCC-
Confidence 6789999999999887653 46666677777787765543 222 245444432 2478999999987532
Q ss_pred CchhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCCCC--CchHHHHHH
Q 024908 76 AEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDH--NDDNVVLEK 153 (260)
Q Consensus 76 ~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~~~--~~~~~~~~~ 153 (260)
...+.+.+..+++.+++.|.++++|++. .... ..+..++|++++|..|+..++|.... ++..++++.
T Consensus 139 ~~~~~~~~~~~~~~~~~~g~~v~~D~~~--------~~~~---~~~~~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~ 207 (303)
T TIGR03168 139 PGVPPDFYAQLIAIARKRGAKVILDTSG--------EALR---EALAAKPFLIKPNHEELEELFGRELKTEEEIIEAARE 207 (303)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEECCc--------HHHH---HHHhcCCcEECCCHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 2345677888999999999999999962 1111 22335799999999999999997533 233456677
Q ss_pred hcCCCCeEEEEecCCCceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHhhH
Q 024908 154 LFHPNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGAL 233 (260)
Q Consensus 154 l~~~g~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~ 233 (260)
+.+.|++.+|||+|.+|++++.+++.+++|+++++++||+||||+|+|||++++.+|++ +++|+++|+++|+.
T Consensus 208 l~~~g~~~vviT~g~~G~~~~~~~~~~~~~~~~~~~vDttGAGD~F~a~~~~~l~~g~~-------i~~a~~~A~~~aa~ 280 (303)
T TIGR03168 208 LLDRGAENVLVSLGADGALLVTKEGALKATPPKVEVVNTVGAGDSMVAGFLAGLARGLS-------LEEALRFAVAAGSA 280 (303)
T ss_pred HHHcCCCEEEEeecCCCcEEEeCCceEEeeCCcceeecCcCHHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHH
Confidence 88889999999999999999998888888888888999999999999999999999999 99999999999999
Q ss_pred HhhhcCCCCCCCCHHHHHHHHhhc
Q 024908 234 TVTERGAIPALPTKEAALKLLHTV 257 (260)
Q Consensus 234 ~~~~~g~~~~~~~~~~l~~~~~~~ 257 (260)
++++.|+. +|+.+++++++.++
T Consensus 281 ~~~~~G~~--~~~~~~~~~~~~~~ 302 (303)
T TIGR03168 281 AAFSPGTG--LPDPEDVEELLDQV 302 (303)
T ss_pred HhcCCCcC--CCCHHHHHHHHhhc
Confidence 99999984 58999999988764
No 29
>PLN02548 adenosine kinase
Probab=100.00 E-value=2.9e-32 Score=231.34 Aligned_cols=225 Identities=17% Similarity=0.209 Sum_probs=172.1
Q ss_pred CHHHHHHHCCCCCCceEEcCCCCceEEEEEEccCCceeEEEeeCCcccccccccccc----hhhhcCccEEEEccccCCC
Q 024908 1 MLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELD----KNLIKQGSIFHYGSISLIA 76 (260)
Q Consensus 1 ~i~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~d~v~~~~~~~~~ 76 (260)
++++.|+++||+++++. .++.+|++++++++ +|+|.++.+. ++...++.+.+. ...++..|++|++++.+.
T Consensus 86 ~i~~~L~~~gVd~~~~~-~~~~~T~~~~i~~~-~g~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~- 160 (332)
T PLN02548 86 EMKKCATAAGVNVHYYE-DESTPTGTCAVLVV-GGERSLVANL--SAANCYKVEHLKKPENWALVEKAKFYYIAGFFLT- 160 (332)
T ss_pred HHHHHHHHcCCceeeec-cCCCCCceEEEEEe-cCCceeeecc--chhhcCCHHHhcChhhHhHHhhCCEEEEEEEEcc-
Confidence 47899999999999875 46678999888875 7888887653 333334444332 235678999999986543
Q ss_pred chhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCCCC--CchHHHHHHh
Q 024908 77 EPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDH--NDDNVVLEKL 154 (260)
Q Consensus 77 ~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~~~--~~~~~~~~~l 154 (260)
.+.+....+++.+++.+.++.+|+..+ +|. ....+.+.++++++|++++|.+|++.++|.... ++....++.+
T Consensus 161 -~~~~~~~~~~~~a~~~g~~~~~~~~~~--~~~--~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~l 235 (332)
T PLN02548 161 -VSPESIMLVAEHAAANNKTFMMNLSAP--FIC--EFFKDQLMEALPYVDFLFGNETEARTFAKVQGWETEDVEEIALKI 235 (332)
T ss_pred -CCHHHHHHHHHHHHHcCCEEEEECCCh--hHH--HHhHHHHHHHHhhCCEEEecHHHHHHHhCccCCCcccHHHHHHHH
Confidence 334677888888999998877777532 231 223456788999999999999999999885321 2222233333
Q ss_pred cC------CCCeEEEEecCCCceEEEecCceeeecCc---ccccccCCCCchHHHHHHHHHHHhcCcccccHHHHHHHHH
Q 024908 155 FH------PNLKLLIVTEGSKGCRYYTKEFKGRVPGV---KTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALL 225 (260)
Q Consensus 155 ~~------~g~~~vivt~G~~G~~~~~~~~~~~~~~~---~~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~ 225 (260)
.+ .+++.||||+|++|++++.++..+++|+. +++++|||||||+|+|||++++.+|++ +++|++
T Consensus 236 ~~~~~~~g~~~~~vvvT~G~~G~~~~~~~~~~~~pa~~~~~~~vvDttGAGDaF~ag~l~~l~~g~~-------l~eal~ 308 (332)
T PLN02548 236 SALPKASGTHKRTVVITQGADPTVVAEDGKVKEFPVIPLPKEKLVDTNGAGDAFVGGFLSQLVQGKD-------IEECVR 308 (332)
T ss_pred HHhhhhccccCCEEEEEeCCCcEEEEECCeEEEeccccCCcCccccCCCchHHHHHHHHHHHHcCCC-------HHHHHH
Confidence 32 25889999999999999988877777653 347999999999999999999999999 999999
Q ss_pred HHHHHhhHHhhhcCCCC
Q 024908 226 FANACGALTVTERGAIP 242 (260)
Q Consensus 226 ~a~~~Aa~~~~~~g~~~ 242 (260)
+|+++|+.+|++.|+..
T Consensus 309 ~a~aaAa~~v~~~G~~~ 325 (332)
T PLN02548 309 AGNYAANVIIQRSGCTY 325 (332)
T ss_pred HHHHHHHHHHhccCCCC
Confidence 99999999999999874
No 30
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=100.00 E-value=1.8e-32 Score=230.31 Aligned_cols=235 Identities=14% Similarity=0.154 Sum_probs=180.2
Q ss_pred CHHHHHHHCCCCCCceEEcCCCCceEEEEEEccCCceeEEEeeCCcccccc--ccccc--chhhhcCccEEEEccccCCC
Q 024908 1 MLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLL--CESEL--DKNLIKQGSIFHYGSISLIA 76 (260)
Q Consensus 1 ~i~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~d~v~~~~~~~~~ 76 (260)
++++.|++.||+++++...+ .|++++.++. +|+++++.+. +++... ..+.+ ....++++|++|+++... .
T Consensus 65 ~i~~~l~~~GV~~~~~~~~~--~t~~~~~~~~-~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~-~ 138 (309)
T TIGR01231 65 FIEKELDHSDIKHAFYKISG--ETRNCIAILH-EGQQTEILEQ--GPEISNQEAAGFLKHFEQLLEKVEVVAISGSLP-K 138 (309)
T ss_pred HHHHHHHHcCCceeEEECCC--CCEEeEEEEe-CCCEEEEeCC--CCCCCHHHHHHHHHHHHHHhccCCEEEEECCCC-C
Confidence 47889999999999877643 4555555554 6888877653 222111 10111 124578999999988643 3
Q ss_pred chhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCCCC---CchHHHHHH
Q 024908 77 EPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDH---NDDNVVLEK 153 (260)
Q Consensus 77 ~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~~~---~~~~~~~~~ 153 (260)
..+.+....+++.+++.|.++++|++. ... ..+...++++|++++|.+|+..++|.... ++..+.++.
T Consensus 139 ~~~~~~~~~~~~~a~~~g~~v~~D~~~--------~~~-~~~~~~~~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~~ 209 (309)
T TIGR01231 139 GLPQDYYAQIIERCQNKGVPVVLDCSG--------ATL-QTVLENPAKPTVIKPNIEELSQLLNQELTEDLESLKQALSQ 209 (309)
T ss_pred CcCHHHHHHHHHHHHhCCCeEEEECCh--------HHH-HHHHhccCCCeEEcCCHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 345678888999999999999999862 111 22333456899999999999999986432 233345556
Q ss_pred hcCCCCeEEEEecCCCceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHhhH
Q 024908 154 LFHPNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGAL 233 (260)
Q Consensus 154 l~~~g~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~ 233 (260)
+...|++.|+||+|++|++++.++..+++|+++++++||+||||+|+|||+++|++|++ +++|+++|+++|++
T Consensus 210 ~~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaF~agfl~~l~~g~~-------~~~a~~~a~a~aa~ 282 (309)
T TIGR01231 210 PLFSGIEWIIVSLGAQGAFAKHGHTFYKVNIPTISVVNPVGSGDSTVAGITSALLNHES-------DHDLLKKANTLGML 282 (309)
T ss_pred HHHcCCCEEEEccCCCceEEEeCCeeEEeeCCccCcCCCcchHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHH
Confidence 66789999999999999999988877888888889999999999999999999999999 99999999999999
Q ss_pred HhhhcCCCCCCCCHHHHHHHHhhccC
Q 024908 234 TVTERGAIPALPTKEAALKLLHTVAA 259 (260)
Q Consensus 234 ~~~~~g~~~~~~~~~~l~~~~~~~~~ 259 (260)
++++.++. ..+.++++++++.++.
T Consensus 283 ~~~~~~~~--~~~~~~~~~~~~~i~~ 306 (309)
T TIGR01231 283 NAQEAQTG--HVNLNNYDDLFNQIEV 306 (309)
T ss_pred HhcCcccC--CCCHHHHHHHHhceEE
Confidence 99988874 5688999999888753
No 31
>cd01943 MAK32 MAK32 kinase. MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.
Probab=100.00 E-value=6.9e-33 Score=234.03 Aligned_cols=223 Identities=17% Similarity=0.238 Sum_probs=177.8
Q ss_pred CHHHHHHHCCCCCCceEEcCCCCceEEEEEEccCCceeEEEeeCCcccccccccccchhhhcCccEEEEccccCCCchhH
Q 024908 1 MLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCR 80 (260)
Q Consensus 1 ~i~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~ 80 (260)
++++.|+++||++++ .+.++.+|+.++++++++|+|.++++ .+.+..++.++++...+..++++|+++.... ..
T Consensus 61 ~l~~~L~~~GVd~~~-~~~~~~~Tg~~~v~~~~~g~r~~~~~--~~~~~~~~~~~l~~~~~~~a~~~hl~~~~~~---~~ 134 (328)
T cd01943 61 SVEDELESWGTGMVF-RRDPGRLTTRGLNIYDGNDRRFFKYL--TPKKRIDVSDDLNSTPLIRSSCIHLICSPER---CA 134 (328)
T ss_pred HHHHHHHhcCCceEE-EeCCCCcchhhhhhcCCCCcceeeec--CcccccccccccccccccCCCeEEEECCHHH---HH
Confidence 368899999999998 77778899999988888888877765 3344667778887777889999999765321 34
Q ss_pred HHHHHHHHHHHH------CCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCCCCCch--HH-H-
Q 024908 81 STQLAAMNLAKE------SGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDD--NV-V- 150 (260)
Q Consensus 81 ~~~~~~~~~a~~------~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~~~~~~--~~-~- 150 (260)
+...++++.+++ .+.++++||++... .....+.+.++++++|++++|++|+..++|....++. .. .
T Consensus 135 ~~~~~~~~~a~~~~~d~~~g~~~~~d~~~~~~----~~~~~~~l~~~l~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~ 210 (328)
T cd01943 135 SIVDDIINLFKLLKGNSPTRPKIVWEPLPDSC----DPENLEDLLQALPRVDVFSPNLEEAARLLGLPTSEPSSDEEKEA 210 (328)
T ss_pred HHHHHHHHHHHhhccccCCccEEEEecCCccc----ChhhHHHHHHHhccCCEECCCHHHHHHHhCCCCCCccchhhhhh
Confidence 678888888888 78889899863221 0112345788999999999999999999997643221 11 1
Q ss_pred ------HHHhcCCCCeEEEEecCCCceEEEe--cCceeeecCccc---ccccCCCCchHHHHHHHHHHHhcCcccccHHH
Q 024908 151 ------LEKLFHPNLKLLIVTEGSKGCRYYT--KEFKGRVPGVKT---KAVDTTGAGDSFVSGILNCLAADQNLIKDENR 219 (260)
Q Consensus 151 ------~~~l~~~g~~~vivt~G~~G~~~~~--~~~~~~~~~~~~---~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~~~~ 219 (260)
...+...+++.||||+|++|+++++ ++..+++|++++ +++|||||||+|+|||++++++|++
T Consensus 211 ~~~~~~~~~~~~~g~~~vvvt~G~~Ga~~~~~~~~~~~~~p~~~v~~~~vvDttGAGDaF~agfl~~l~~g~~------- 283 (328)
T cd01943 211 VLQALLFSGILQDPGGGVVLRCGKLGCYVGSADSGPELWLPAYHTKSTKVVDPTGGGNSFLGGFAAGLALTKS------- 283 (328)
T ss_pred hHHHHHHHhhhccCCCEEEEEeCCCCCEEEecCCCceEecCCccCCCCcccCCCCchHHHHHHHHHHHHcCCC-------
Confidence 1122457899999999999999988 456778888877 8999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHhhhcCC
Q 024908 220 LREALLFANACGALTVTERGA 240 (260)
Q Consensus 220 ~~~a~~~a~~~Aa~~~~~~g~ 240 (260)
+++|+++|+++|+.++++.|.
T Consensus 284 ~~~al~~a~a~Aa~~v~~~G~ 304 (328)
T cd01943 284 IDEACIYGSVAASFAIEQVGL 304 (328)
T ss_pred HHHHHHHHHHHHHHHHccCCC
Confidence 999999999999999999995
No 32
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=100.00 E-value=1.1e-31 Score=225.88 Aligned_cols=229 Identities=16% Similarity=0.165 Sum_probs=181.2
Q ss_pred HHHHHHCCCCCCceEEcCCCCceEEEEEEccCCceeEEEeeCCcccccccccccc------hhhhcCccEEEEccccCCC
Q 024908 3 ANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELD------KNLIKQGSIFHYGSISLIA 76 (260)
Q Consensus 3 ~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~d~v~~~~~~~~~ 76 (260)
++.|+++||++.++ ..++ +|+.++.+++.+|+++++.+ .+. .++..+.. ...++++|++|+++... .
T Consensus 71 ~~~l~~~gv~~~~~-~~~~-~t~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~l~~~d~v~~~g~~~-~ 143 (312)
T PRK09513 71 QQLFSELGIANRFQ-VVQG-RTRINVKLTEKDGEVTDFNF--SGF--EVTPADWERFVTDSLSWLGQFDMVAVSGSLP-R 143 (312)
T ss_pred HHHHHHcCCCccEE-ECCC-CCEEEEEEEeCCCcEEEEeC--CCC--CCCHHHHHHHHHHHHhhcCCCCEEEEECCCC-C
Confidence 46899999998766 4444 68888888888888876654 222 23333221 24578999999998643 3
Q ss_pred chhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCCCCC--chHHHHHHh
Q 024908 77 EPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHN--DDNVVLEKL 154 (260)
Q Consensus 77 ~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~~~~--~~~~~~~~l 154 (260)
..+.+.+..+++.+++.|.++++|++. .... ..+....+++++|.+|+..++|....+ +..++++.+
T Consensus 144 ~~~~~~~~~~~~~a~~~g~~v~~D~~~--------~~~~---~~~~~~~~~l~~n~~E~~~l~g~~~~~~~~~~~~~~~l 212 (312)
T PRK09513 144 GVSPEAFTDWMTRLRSQCPCIIFDSSR--------EALV---AGLKAAPWLVKPNRRELEIWAGRKLPELKDVIEAAHAL 212 (312)
T ss_pred CCCHHHHHHHHHHHHhcCCEEEEECCh--------HHHH---HHhccCCeEEcCCHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 345678888999999999999999862 1112 223457889999999999999875332 333466778
Q ss_pred cCCCCeEEEEecCCCceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHhhHH
Q 024908 155 FHPNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALT 234 (260)
Q Consensus 155 ~~~g~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~ 234 (260)
.+.|++.||||+|++|++++.+++.++.++++++++||+||||+|+|||+++|++|++ +++|+++|+++|+.+
T Consensus 213 ~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vDttGAGDaf~ag~i~~l~~g~~-------~~~a~~~A~a~Aa~~ 285 (312)
T PRK09513 213 REQGIAHVVISLGAEGALWVNASGEWIAKPPACDVVSTVGAGDSMVGGLIYGLLMRES-------SEHTLRLATAVSALA 285 (312)
T ss_pred HHcCCCEEEEEeCCCCcEEEeCCceEEecCCCccccCCCChHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHH
Confidence 8899999999999999999888777778887889999999999999999999999999 999999999999999
Q ss_pred hhhcCCCCCCCCHHHHHHHHhhcc
Q 024908 235 VTERGAIPALPTKEAALKLLHTVA 258 (260)
Q Consensus 235 ~~~~g~~~~~~~~~~l~~~~~~~~ 258 (260)
+++.| .++++.+++++++.+++
T Consensus 286 ~~~~~--~~~~~~~e~~~~l~~~~ 307 (312)
T PRK09513 286 VSQSN--VGITDRPQLAAMMARVD 307 (312)
T ss_pred hhCCC--CCCCCHHHHHHHHhceE
Confidence 99997 37899999999988765
No 33
>PRK09954 putative kinase; Provisional
Probab=100.00 E-value=4.4e-32 Score=232.60 Aligned_cols=233 Identities=17% Similarity=0.171 Sum_probs=178.9
Q ss_pred CHHHHHHHCCCCCCceEEcCCCCceEEEEEEccCCceeEEEeeCCcccccccccccch--hhhcCccEEEEccccCCCch
Q 024908 1 MLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDK--NLIKQGSIFHYGSISLIAEP 78 (260)
Q Consensus 1 ~i~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~v~~~~~~~~~~~ 78 (260)
++++.|++.||+++++...++.+|+.++++.+.++++ ++.+........++++.+.. ..+..++++++++. .
T Consensus 124 ~i~~~l~~~GVd~~~~~~~~~~~T~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~ 197 (362)
T PRK09954 124 TLLEETRRAGVNVSGCIRLHGQSTSTYLAIANRQDET-VLAINDTHILQQLTPQLLNGSRDLIRHAGVVLADCN-----L 197 (362)
T ss_pred HHHHHHHHcCCCccceEEcCCCCCeEEEEEEcCCCCE-EEEEcCchhhhcCCHHHHHHHHHHHhcCCEEEEECC-----C
Confidence 4788999999999999888888899998887765554 44443333334455544442 34677888877642 2
Q ss_pred hHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCCCC--CchHHHHHHhcC
Q 024908 79 CRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDH--NDDNVVLEKLFH 156 (260)
Q Consensus 79 ~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~~~--~~~~~~~~~l~~ 156 (260)
+.+....+++.+ .++++++|+... .....+.++++++|++++|.+|++.++|.... ++...+++.+.+
T Consensus 198 ~~~~~~~~~~~a--~~~~v~~D~~~~--------~~~~~~~~~l~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~~l~~ 267 (362)
T PRK09954 198 TAEALEWVFTLA--DEIPVFVDTVSE--------FKAGKIKHWLAHIHTLKPTQPELEILWGQAITSDADRNAAVNALHQ 267 (362)
T ss_pred CHHHHHHHHHhC--CCCcEEEECCCH--------HHhhhhhhhhccccEEecCHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 344555566554 378999998621 11233567889999999999999999986432 223356678888
Q ss_pred CCCeEEEEecCCCceEEEecC-ceeeecCcccccccCCCCchHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHhhHHh
Q 024908 157 PNLKLLIVTEGSKGCRYYTKE-FKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTV 235 (260)
Q Consensus 157 ~g~~~vivt~G~~G~~~~~~~-~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~~ 235 (260)
.|++.||||+|++|++++.++ ..+++|+++++++|||||||+|+|||++++.+|++ +++|+++|+++|++++
T Consensus 268 ~g~~~Vvvt~G~~G~~~~~~~~~~~~~~~~~v~vvDttGAGDaF~Ag~l~~l~~g~~-------~~eal~~a~a~Aal~~ 340 (362)
T PRK09954 268 QGVQQIFVYLPDESVFCSEKDGEQFLLTAPAHTTVDSFGADDGFMAGLVYSFLEGYS-------FRDSARFAMACAAISR 340 (362)
T ss_pred cCCCEEEEEeCCccEEEEeCCCceEeccCCCcccccccchHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHh
Confidence 999999999999999988755 45677888889999999999999999999999999 9999999999999998
Q ss_pred hhcCCCCCCCCHHHHHHHHhh
Q 024908 236 TERGAIPALPTKEAALKLLHT 256 (260)
Q Consensus 236 ~~~g~~~~~~~~~~l~~~~~~ 256 (260)
.+..++.+-.+.+.|++.++.
T Consensus 341 ~s~~~~~~~~~~~~~~~~~~~ 361 (362)
T PRK09954 341 ASGSLNNPTLSADNALSLVPM 361 (362)
T ss_pred cCCCcCCCcCCHHHHHHHhcc
Confidence 876666666899999998864
No 34
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=100.00 E-value=1.3e-31 Score=220.29 Aligned_cols=211 Identities=26% Similarity=0.281 Sum_probs=167.0
Q ss_pred CHHHHHHHCCCCCCceEEcCCCCceEEEEEEccCCceeEEEeeCCcccccccccccchhhhcCccEEEEccccCCCchhH
Q 024908 1 MLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCR 80 (260)
Q Consensus 1 ~i~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~ 80 (260)
++++.|++.||+++++.+.+ .+|+.+++. ..+|+|++..++. ++.....+.+.....++++|++|++++.. .
T Consensus 53 ~i~~~l~~~gI~~~~v~~~~-~~t~~~~~~-~~~g~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~ 124 (264)
T cd01940 53 HVRSTLKRLGVDISHCRVKE-GENAVADVE-LVDGDRIFGLSNK-GGVAREHPFEADLEYLSQFDLVHTGIYSH-----E 124 (264)
T ss_pred HHHHHHHHcCCChhheEEcC-CCCceEEEE-ecCCceEEEeecC-CcHHhcccCcccHhHHhcCCEEEEccccc-----H
Confidence 37889999999999998765 468887755 4678888877642 22222222223335678999999987643 3
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCCCCCchHHHHHHhcCCCCe
Q 024908 81 STQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLK 160 (260)
Q Consensus 81 ~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~~~~~~~~~~~~l~~~g~~ 160 (260)
+....+++++++.++++++|++.+.. ...+..+++++|++++|.+|... .+..++++.+.+.+++
T Consensus 125 ~~~~~~~~~a~~~g~~v~~D~~~~~~--------~~~~~~~~~~~d~~~~~~~~~~~-------~~~~~~~~~l~~~~~~ 189 (264)
T cd01940 125 GHLEKALQALVGAGALISFDFSDRWD--------DDYLQLVCPYVDFAFFSASDLSD-------EEVKAKLKEAVSRGAK 189 (264)
T ss_pred HHHHHHHHHHHHcCCEEEEcCcccCC--------HHHHHhhcccCCEEEechhhcCc-------chHHHHHHHHHHcCCC
Confidence 57788899999999999999976421 23356788999999999876521 2333456778889999
Q ss_pred EEEEecCCCceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHhhHHhhhcCC
Q 024908 161 LLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGA 240 (260)
Q Consensus 161 ~vivt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~~~~~g~ 240 (260)
.||||+|++|++++.++..+++|+++++++|||||||+|+|||+++|.+|++ ++++++++|+++|+.++++.|+
T Consensus 190 ~vvvT~G~~G~~~~~~~~~~~~~~~~~~~vDttGAGDaf~ag~i~~l~~g~~------~~~~al~~a~~~aa~~~~~~G~ 263 (264)
T cd01940 190 LVIVTRGEDGAIAYDGAVFYSVAPRPVEVVDTLGAGDSFIAGFLLSLLAGGT------AIAEAMRQGAQFAAKTCGHEGA 263 (264)
T ss_pred EEEEEECCCCeEEEeCCeEEecCCcCCCCCCCCCchHHHHHHHHHHHHhCCc------hHHHHHHHHHHHHHHHhcccCC
Confidence 9999999999999998888888888899999999999999999999999984 3899999999999999999986
No 35
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=100.00 E-value=6.1e-32 Score=227.81 Aligned_cols=229 Identities=22% Similarity=0.254 Sum_probs=176.6
Q ss_pred CHHHHHHHCCCCCCceEEcCCCCceEEEEEEccCCceeEEEeeCCcccccccc----cccc--hhhhcCccEEEEccccC
Q 024908 1 MLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCE----SELD--KNLIKQGSIFHYGSISL 74 (260)
Q Consensus 1 ~i~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~d~v~~~~~~~ 74 (260)
++++.|++.||+++++.+.++.+|+.++++.+.++.. .... ......++. +.+. ...++++|++++++..
T Consensus 78 ~i~~~l~~~gI~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~- 153 (315)
T TIGR02198 78 RLEALLAEEGIDTSGLIRDKDRPTTTKTRVLARNQQL--LRVD-FEERDPINAELEARLLAAIREQLASADAVVLSDYA- 153 (315)
T ss_pred HHHHHHHHCCCCcceEEECCCCCcceEEEEEcCCeEE--EEec-CCCCCCCCHHHHHHHHHHHHhhhhhCCEEEEecCC-
Confidence 3678999999999998888888899998888764322 2221 111111221 1111 2457899999998753
Q ss_pred CCchhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCCC-CCchHHHHHH
Q 024908 75 IAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDD-HNDDNVVLEK 153 (260)
Q Consensus 75 ~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~~-~~~~~~~~~~ 153 (260)
....+.+.+..+++.+++.|+++++||+++. ...++++|++++|.+|++.+++... .++..++++.
T Consensus 154 ~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~-------------~~~~~~~d~l~~n~~E~~~l~~~~~~~~~~~~~~~~ 220 (315)
T TIGR02198 154 KGVLTPRVVQEVIAAARKHGKPVLVDPKGKD-------------FSRYRGATLITPNRKEAEAAVGACDTEAELVQAAEK 220 (315)
T ss_pred CCccCHHHHHHHHHHHHhcCCCEEEeCCCcc-------------hhhcCCCcEECCCHHHHHHHhCCCCCHHHHHHHHHH
Confidence 3344567888899999999999999997431 1246789999999999999998422 2233345555
Q ss_pred hc-CCCCeEEEEecCCCceEEEec-CceeeecCcccccccCCCCchHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHh
Q 024908 154 LF-HPNLKLLIVTEGSKGCRYYTK-EFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACG 231 (260)
Q Consensus 154 l~-~~g~~~vivt~G~~G~~~~~~-~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~A 231 (260)
++ +.|++.||||+|++|++++.+ +..+++|+++++++||+||||+|+|||++++.+|++ +++|+++|+++|
T Consensus 221 l~~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~~~~vvdt~GAGDaf~ag~~~~l~~g~~-------~~~al~~A~~~a 293 (315)
T TIGR02198 221 LLEELDLEALLVTRSEKGMTLFTREGEPIHIPAQAREVYDVTGAGDTVIATLALALAAGAS-------LEEACRLANAAA 293 (315)
T ss_pred HHHHcCCCEEEEEcCCCCeEEEecCCCeEEecCCCCCCCCCcCccHHHHHHHHHHHHcCCC-------HHHHHHHHHHHh
Confidence 55 478999999999999999884 567888888889999999999999999999999999 999999999999
Q ss_pred hHHhhhcCCCCCCCCHHHHHHHHh
Q 024908 232 ALTVTERGAIPALPTKEAALKLLH 255 (260)
Q Consensus 232 a~~~~~~g~~~~~~~~~~l~~~~~ 255 (260)
+++|++.|+.. ++.+++++.++
T Consensus 294 a~~~~~~G~~~--~~~~~~~~~~~ 315 (315)
T TIGR02198 294 GVVVGKLGTAT--VSPAELANALQ 315 (315)
T ss_pred hhhhccCCCCC--CCHHHHHHHhC
Confidence 99999999864 69999987653
No 36
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=100.00 E-value=6.1e-32 Score=226.70 Aligned_cols=218 Identities=23% Similarity=0.298 Sum_probs=170.0
Q ss_pred CHHHHHHHCCCCCCceEEcCCCCceEEEEEEccCCceeEEEeeCCcccccccccc------cchhhhcCccEEEEccccC
Q 024908 1 MLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESE------LDKNLIKQGSIFHYGSISL 74 (260)
Q Consensus 1 ~i~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~d~v~~~~~~~ 74 (260)
++++.|+++||+++++ ..++.+|+.++++.++ +++.+..+.. ....++... .....++++|++|+++. .
T Consensus 70 ~i~~~l~~~gI~~~~~-~~~~~~t~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~v~~s~~-~ 144 (304)
T cd01172 70 LLRKLLEKEGIDTDGI-VDEGRPTTTKTRVIAR-NQQLLRVDRE--DDSPLSAEEEQRLIERIAERLPEADVVILSDY-G 144 (304)
T ss_pred HHHHHHHhCCCCcceE-ecCCCCceEEEEEecC-CcEEEEEecC--CCCCCCHHHHHHHHHHHHHhhccCCEEEEEcC-C
Confidence 4788999999999985 5566679998888765 4555544321 222233221 11245789999999764 3
Q ss_pred CCchhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCCCC--CchHHHHH
Q 024908 75 IAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDH--NDDNVVLE 152 (260)
Q Consensus 75 ~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~~~--~~~~~~~~ 152 (260)
....+.+.+..+++.+++.+.++++|++.+.. ..++++|++++|.+|++.+++.... ++..++++
T Consensus 145 ~~~~~~~~~~~~~~~a~~~~~~v~~D~~~~~~-------------~~~~~~d~l~~n~~E~~~l~~~~~~~~~~~~~~~~ 211 (304)
T cd01172 145 KGVLTPRVIEALIAAARELGIPVLVDPKGRDY-------------SKYRGATLLTPNEKEAREALGDEINDDDELEAAGE 211 (304)
T ss_pred CCccCHHHHHHHHHHHHhcCCCEEEeCCCcch-------------hhccCCcEeCCCHHHHHHHhCCCCCChHHHHHHHH
Confidence 33344577888999999999999999974311 4567899999999999999987422 23334556
Q ss_pred Hhc-CCCCeEEEEecCCCceEEEe-cCceeeecCcccccccCCCCchHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHH
Q 024908 153 KLF-HPNLKLLIVTEGSKGCRYYT-KEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANAC 230 (260)
Q Consensus 153 ~l~-~~g~~~vivt~G~~G~~~~~-~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~ 230 (260)
.+. +.|++.||||+|++|++++. +++.+++|+++++++|||||||+|+|||+++|.+|++ +++|+++|+++
T Consensus 212 ~l~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGDaf~ag~i~~l~~g~~-------~~~al~~a~a~ 284 (304)
T cd01172 212 KLLELLNLEALLVTLGEEGMTLFERDGEVQHIPALAKEVYDVTGAGDTVIATLALALAAGAD-------LEEAAFLANAA 284 (304)
T ss_pred HHHHHhCCCeEEEEcCCCccEEEcCCCcEEEecCCCCCCCCCcCccHHHHHHHHHHHHcCCC-------HHHHHHHHHHH
Confidence 665 47899999999999999998 6778899999899999999999999999999999999 99999999999
Q ss_pred hhHHhhhcCCCCC
Q 024908 231 GALTVTERGAIPA 243 (260)
Q Consensus 231 Aa~~~~~~g~~~~ 243 (260)
|+.+|++.|+.+.
T Consensus 285 Aa~~~~~~g~~~~ 297 (304)
T cd01172 285 AGVVVGKVGTAPV 297 (304)
T ss_pred hheeeecCCCCCc
Confidence 9999999998754
No 37
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=99.98 E-value=5e-31 Score=219.74 Aligned_cols=213 Identities=21% Similarity=0.203 Sum_probs=163.3
Q ss_pred CHHHHHHHCCCCCCceEEcCCCCceEEEEEEccCCceeEEEeeCCcccccccccccchhhhcCccEEEEccccCCCchhH
Q 024908 1 MLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCR 80 (260)
Q Consensus 1 ~i~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~ 80 (260)
++++.|++.||+++++.+.++..|..++++.+++|+|+++++. .+...++.++++...++++|++|+++..+
T Consensus 67 ~~~~~l~~~gId~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~------ 138 (290)
T cd01939 67 SLLDDFQSRGIDISHCYRKDIDEPASSYIIRSRAGGRTTIVND--NNLPEVTYDDFSKIDLTQYGWIHFEGRNP------ 138 (290)
T ss_pred HHHHHHHHcCCceeeeeEcCCCCCeeEEEEEcCCCCeEEEEeC--CCCCCCCHHHHhhhhhccCCEEEEeccCH------
Confidence 4789999999999998666655666667777778888888763 34456777777666668999999988643
Q ss_pred HHHHHHHHHHHHCC-------CeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCCCCCchHHHHHH
Q 024908 81 STQLAAMNLAKESG-------SILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEK 153 (260)
Q Consensus 81 ~~~~~~~~~a~~~~-------~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~~~~~~~~~~~~ 153 (260)
+....+++.+++.+ .++++|+..+. +.+.++++++|++++|.+|++.+ +..+.++.. ....
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~----------~~~~~~l~~~di~~~n~~~~~~~-~~~~~~~~~-~~~~ 206 (290)
T cd01939 139 DETLRMMQHIEEHNNRRPEIRITISVEVEKPR----------EELLELAAYCDVVFVSKDWAQSR-GYKSPEECL-RGEG 206 (290)
T ss_pred HHHHHHHHHHHHhcCcCCCcceEEEEEeccCc----------hhhhhHHhhCCEEEEEhHHHHhc-CcCCHHHHH-Hhhh
Confidence 23445666666655 57888875321 22347888999999999998864 554333322 1122
Q ss_pred hcCCCCeEEEEecCCCceEEEec-CceeeecCccc-ccccCCCCchHHHHHHHHHHHhcC-cccccHHHHHHHHHHHHHH
Q 024908 154 LFHPNLKLLIVTEGSKGCRYYTK-EFKGRVPGVKT-KAVDTTGAGDSFVSGILNCLAADQ-NLIKDENRLREALLFANAC 230 (260)
Q Consensus 154 l~~~g~~~vivt~G~~G~~~~~~-~~~~~~~~~~~-~~vdt~GaGDaf~Ag~~~~l~~g~-~~~~~~~~~~~a~~~a~~~ 230 (260)
+...+++.||||+|++|++++.+ +..+++|+++. +++||+||||+|+|||++++.+|+ + +++|+++|+++
T Consensus 207 ~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~vvDt~GAGDsf~agfl~~l~~g~~~-------~~~a~~~a~a~ 279 (290)
T cd01939 207 PRAKKAALLVCTWGDQGAGALGPDGEYVHSPAHKPIRVVDTLGAGDTFNAAVIYALNKGPDD-------LSEALDFGNRV 279 (290)
T ss_pred hhccCCcEEEEEcccCCeEEEcCCCCEEEecCCCCCCcccCCCchHHHHHHHHHHHHcCCcc-------HHHHHHHHHHH
Confidence 33468999999999999999876 45678888764 699999999999999999999999 8 99999999999
Q ss_pred hhHHhhhcCC
Q 024908 231 GALTVTERGA 240 (260)
Q Consensus 231 Aa~~~~~~g~ 240 (260)
|++++++.|.
T Consensus 280 aa~~i~~~G~ 289 (290)
T cd01939 280 ASQKCTGVGF 289 (290)
T ss_pred HHHHHhhhcC
Confidence 9999999884
No 38
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=99.98 E-value=1.4e-30 Score=217.04 Aligned_cols=214 Identities=27% Similarity=0.306 Sum_probs=168.1
Q ss_pred CHHHHHHHCCCCCCceEEcCCCCceEEEEEEccCCceeEEEeeCCcccccccccccch------hhhcCccEEEEccccC
Q 024908 1 MLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDK------NLIKQGSIFHYGSISL 74 (260)
Q Consensus 1 ~i~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~d~v~~~~~~~ 74 (260)
++++.|++.||+++++... .+|++.+++.+.+|+++.+.+ .++ .++.++++. ..++++|++|+++...
T Consensus 66 ~i~~~l~~~gi~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~ 139 (289)
T cd01164 66 FFEALLKEEGIPDDFVEVA--GETRINVKIKEEDGTETEINE--PGP--EISEEELEALLEKLKALLKKGDIVVLSGSLP 139 (289)
T ss_pred HHHHHHHHcCCCceEEECC--CCCEEEEEEEeCCCCEEEEeC--CCC--CCCHHHHHHHHHHHHHhcCCCCEEEEeCCCC
Confidence 3678999999999988764 346777777776676665543 222 244444322 3457899999987543
Q ss_pred CCchhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHh-hhCCEEecCHHHHhhhcCCCC--CCchHHHH
Q 024908 75 IAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIW-DQADIIKVSDDEITFLTGGDD--HNDDNVVL 151 (260)
Q Consensus 75 ~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l-~~~dvl~~n~~E~~~l~g~~~--~~~~~~~~ 151 (260)
. ..+.+....+++.+++.+.++++|++. ... .+.+ +++|++++|.+|++.+++... .++...++
T Consensus 140 ~-~~~~~~~~~~~~~~~~~~~~i~~D~~~--------~~~----~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~ 206 (289)
T cd01164 140 P-GVPADFYAELVRLAREKGARVILDTSG--------EAL----LAALAAKPFLIKPNREELEELFGRPLGDEEDVIAAA 206 (289)
T ss_pred C-CcCHHHHHHHHHHHHHcCCeEEEECCh--------HHH----HHHHhcCCcEECCCHHHHHHHhCCCCCCHHHHHHHH
Confidence 2 234467778888899999999999852 111 2233 699999999999999998653 23344567
Q ss_pred HHhcCCCCeEEEEecCCCceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHh
Q 024908 152 EKLFHPNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACG 231 (260)
Q Consensus 152 ~~l~~~g~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~A 231 (260)
+.|.+.+++.|+||+|++|++++.+++.+++++++.+++||+||||+|+|||++++.+|++ +++|+++|+++|
T Consensus 207 ~~l~~~g~~~vivt~G~~G~~~~~~~~~~~~~~~~~~vvDttGAGDaf~a~~i~~l~~g~~-------~~~a~~~A~~~A 279 (289)
T cd01164 207 RKLIERGAENVLVSLGADGALLVTKDGVYRASPPKVKVVSTVGAGDSMVAGFVAGLAQGLS-------LEEALRLAVAAG 279 (289)
T ss_pred HHHHHcCCCEEEEecCCCCCEEEcCCcEEEecCCCccccCCCChHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHH
Confidence 7888899999999999999999988888888888889999999999999999999999999 999999999999
Q ss_pred hHHhhhcCC
Q 024908 232 ALTVTERGA 240 (260)
Q Consensus 232 a~~~~~~g~ 240 (260)
+.+|++.|+
T Consensus 280 a~~~~~~G~ 288 (289)
T cd01164 280 SATAFSPGT 288 (289)
T ss_pred HHHhcCccC
Confidence 999999985
No 39
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.97 E-value=2.3e-30 Score=213.11 Aligned_cols=198 Identities=25% Similarity=0.316 Sum_probs=161.2
Q ss_pred HHHHHHHCCCCCCceEEcCCCCceEEEEEEccCCceeEEEeeCCcccccccccccchhhhcCccEEEEccccCCCchhHH
Q 024908 2 LANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRS 81 (260)
Q Consensus 2 i~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~ 81 (260)
+++.|++ |++++++... +..|+.++++++.+|+|++.... ... .++++...++++|++|+++...
T Consensus 68 i~~~l~~-~~~~~~~~~~-~~~t~~~~~~~~~~g~r~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~------- 132 (265)
T cd01947 68 SLEELES-GGDKHTVAWR-DKPTRKTLSFIDPNGERTITVPG--ERL----EDDLKWPILDEGDGVFITAAAV------- 132 (265)
T ss_pred HHHHHHh-cCCcceEEec-CCCCceEEEEECCCCcceEEecC--CCC----cccCCHhHhccCCEEEEecccc-------
Confidence 6889999 9999887654 45899999999888999887642 211 2444455778999999987531
Q ss_pred HHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCCCCCchHHHHHHhcCCCCeE
Q 024908 82 TQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLKL 161 (260)
Q Consensus 82 ~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~~~~~~~~~~~~l~~~g~~~ 161 (260)
..++++.+++.+ .+++|+..+.. ...+.++++++|++++|.+|+..+++ ++.+.+.+++.
T Consensus 133 -~~~~~~~a~~~~-~~~~d~~~~~~--------~~~~~~~~~~~d~~~~n~~e~~~l~~----------~~~~~~~~~~~ 192 (265)
T cd01947 133 -DKEAIRKCRETK-LVILQVTPRVR--------VDELNQALIPLDILIGSRLDPGELVV----------AEKIAGPFPRY 192 (265)
T ss_pred -cHHHHHHHHHhC-CeEeccCcccc--------chhHHHHhhhCCEEEeCHHHHHHhhh----------HHHHHhccCCE
Confidence 234566777765 57788865433 12456788999999999999998864 35666789999
Q ss_pred EEEecCCCceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHhhHHhhhcCCC
Q 024908 162 LIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGAI 241 (260)
Q Consensus 162 vivt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~~~~~g~~ 241 (260)
|+||+|++|+++++++..+++|+++++++|||||||+|+|||++++.+|++ +++|+++|+++|+.++++.|++
T Consensus 193 viit~G~~Ga~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~l~~l~~g~~-------~~~al~~a~~~Aa~~v~~~G~~ 265 (265)
T cd01947 193 LIVTEGELGAILYPGGRYNHVPAKKAKVPDSTGAGDSFAAGFIYGLLKGWS-------IEEALELGAQCGAICVSHFGPY 265 (265)
T ss_pred EEEEeCCCCeEEEECCeeEECCCCCCCCCCCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHhccCCC
Confidence 999999999999998888899998899999999999999999999999999 9999999999999999999863
No 40
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=99.97 E-value=4.1e-30 Score=210.93 Aligned_cols=206 Identities=24% Similarity=0.221 Sum_probs=160.9
Q ss_pred CHHHHHHHCCCCCCceEEcCCCCceEEEEEEccCCceeEEEeeCCcccccccccccchhhhcCccEEEEccccCCCchhH
Q 024908 1 MLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCR 80 (260)
Q Consensus 1 ~i~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~ 80 (260)
++++.|++.||+++++.+.++ +|+.+++.++ +++|++..+. .+....+..++.+.+.+++++++|++.+.
T Consensus 54 ~i~~~l~~~gI~~~~~~~~~~-~t~~~~~~~~-~~~r~~~~~~-~~~~~~~~~~~~~~~~l~~~~~v~~~~~~------- 123 (260)
T PRK09813 54 KLKQDLARMGVDISHVHTKHG-VTAQTQVELH-DNDRVFGDYT-EGVMADFALSEEDYAWLAQYDIVHAAIWG------- 123 (260)
T ss_pred HHHHHHHHcCCcchheeeecC-CCceEEEEEe-CCcEEeeccC-CCcccccccCHHHHHHHHhCCEEEEeccc-------
Confidence 368899999999999987654 7888777775 6888876553 22222233333334567899999986421
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCCCCCchHHHHHHhcCCCCe
Q 024908 81 STQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLK 160 (260)
Q Consensus 81 ~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~~~~~~~~~~~~l~~~g~~ 160 (260)
....+++.++++++++++|++.+.. ...+..+++++|+++.|.++. ..+..++++.+.+.|++
T Consensus 124 -~~~~~~~~~~~~~~~v~~D~~~~~~--------~~~~~~~~~~~d~~~~~~~~~--------~~~~~~~~~~~~~~g~~ 186 (260)
T PRK09813 124 -HAEDAFPQLHAAGKLTAFDFSDKWD--------SPLWQTLVPHLDYAFASAPQE--------DEFLRLKMKAIVARGAG 186 (260)
T ss_pred -hHHHHHHHHHHcCCeEEEEcCCCcc--------HHHHHHhCCceeEEEecCCcc--------hHHHHHHHHHHHHcCCC
Confidence 1235677788899999999975421 234567899999999886531 11223466778889999
Q ss_pred EEEEecCCCceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHhhHHhhhcCC
Q 024908 161 LLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGA 240 (260)
Q Consensus 161 ~vivt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~~~~~g~ 240 (260)
.+|||+|++|++++.+++.+++|+++++++|||||||+|+|||++++.+|++ +++|+++|+++|+.++++.|+
T Consensus 187 ~viit~G~~Ga~~~~~~~~~~~~~~~~~~vDttGAGDaF~ag~i~~~~~g~~-------~~~al~~a~~~aa~~~~~~G~ 259 (260)
T PRK09813 187 VVIVTLGENGSIAWDGAQFWRQAPEPVTVVDTMGAGDSFIAGFLCGWLAGMT-------LPQAMAQGTACAAKTIQYHGA 259 (260)
T ss_pred EEEEEECCCceEEEECCEEEecCCcccCCCCCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHhccCC
Confidence 9999999999999998888899998899999999999999999999999999 999999999999999999985
No 41
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.97 E-value=7.2e-30 Score=212.56 Aligned_cols=214 Identities=23% Similarity=0.293 Sum_probs=166.3
Q ss_pred HHHHHHHCCCCCCceEEcCCCCceEEEEEEccCCceeEEEeeCCcccccccccccc--hhhhcCccEEEEccccCCCchh
Q 024908 2 LANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELD--KNLIKQGSIFHYGSISLIAEPC 79 (260)
Q Consensus 2 i~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~v~~~~~~~~~~~~ 79 (260)
+++.|++.||+++++. .++.+|+.++++++.+|++++... .......++.+.++ ...+.+++++++++. .+
T Consensus 67 i~~~L~~~gI~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~-----~~ 139 (288)
T cd01941 67 ILEESEKAGLNVRGIV-FEGRSTASYTAILDKDGDLVVALA-DMDIYELLTPDFLRKIREALKEAKPIVVDAN-----LP 139 (288)
T ss_pred HHHHHHHcCCccceee-eCCCCcceEEEEECCCCCEEEEEe-chHhhhhCCHHHHHHHHHHHhcCCEEEEeCC-----CC
Confidence 6889999999999887 567789999999988899887432 22232233332222 346789999987642 24
Q ss_pred HHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCCCCC--chHHHHHHhcCC
Q 024908 80 RSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHN--DDNVVLEKLFHP 157 (260)
Q Consensus 80 ~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~~~~--~~~~~~~~l~~~ 157 (260)
.+....+++.+++.+.++++||.... ..... .++++++|++++|.+|+..++|....+ ....+++.+...
T Consensus 140 ~~~~~~~~~~a~~~~~~v~~d~~~~~-------~~~~~-~~~~~~~dii~~n~~E~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (288)
T cd01941 140 EEALEYLLALAAKHGVPVAFEPTSAP-------KLKKL-FYLLHAIDLLTPNRAELEALAGALIENNEDENKAAKILLLP 211 (288)
T ss_pred HHHHHHHHHhhhhcCCcEEEEccchH-------Hhccc-hhhcccceEEeCCHHHHHHHhCcccCCchhHHHHHHHHHHc
Confidence 45777888889999999999986321 11111 157899999999999999998875322 222345677778
Q ss_pred CCeEEEEecCCCceEEEec---CceeeecC-cccccccCCCCchHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHhhH
Q 024908 158 NLKLLIVTEGSKGCRYYTK---EFKGRVPG-VKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGAL 233 (260)
Q Consensus 158 g~~~vivt~G~~G~~~~~~---~~~~~~~~-~~~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~ 233 (260)
+++.|+||+|.+|++++.+ +..+++|+ ++.+++||+||||+|.|||+++|++|++ +++|+++|+++|+.
T Consensus 212 ~~~~vvit~G~~Ga~~~~~~~~~~~~~~~~~~~~~~vDttGAGDaf~a~~~~~l~~g~~-------~~~al~~a~~~Aa~ 284 (288)
T cd01941 212 GIKNVIVTLGAKGVLLSSREGGVETKLFPAPQPETVVNVTGAGDAFVAGLVAGLLEGMS-------LDDSLRFAQAAAAL 284 (288)
T ss_pred CCcEEEEEeCCCcEEEEecCCCceeEEecCCCCccceeCCCcHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHH
Confidence 9999999999999999987 46678887 5778999999999999999999999999 99999999999999
Q ss_pred Hhhh
Q 024908 234 TVTE 237 (260)
Q Consensus 234 ~~~~ 237 (260)
+|+.
T Consensus 285 ~~~~ 288 (288)
T cd01941 285 TLES 288 (288)
T ss_pred HhcC
Confidence 9863
No 42
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=99.97 E-value=1e-28 Score=218.87 Aligned_cols=228 Identities=20% Similarity=0.163 Sum_probs=173.3
Q ss_pred CHHHHHHHCCCCCCceEEcCCCCceEEEEEEccCCceeEEEeeCCcccccccccccc---hhhhcCccEEEEccccCCCc
Q 024908 1 MLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELD---KNLIKQGSIFHYGSISLIAE 77 (260)
Q Consensus 1 ~i~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~v~~~~~~~~~~ 77 (260)
++++.|++.||+++++.+ ++.+|++++++++.+++...... .........+.+. ...+++++++|++++.. +
T Consensus 81 ~i~~~L~~~gI~~~~v~~-~~~~T~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~l~~~~~v~is~~~~--~ 155 (473)
T PRK11316 81 ALSKLLAAVGVKCDFVSV-PTHPTITKLRVLSRNQQLIRLDF--EEGFEGVDPQPLLERIEQALPSIGALVLSDYAK--G 155 (473)
T ss_pred HHHHHHHHcCCceeEEEc-CCCCCCeeEEEEeCCceEEeccc--ccCCCchhHHHHHHHHHHHhccCCEEEEecCCc--c
Confidence 478899999999998866 56689888888775443222111 1111122333222 24578999999986543 1
Q ss_pred hhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCCC-CCchHHHHHHhc-
Q 024908 78 PCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDD-HNDDNVVLEKLF- 155 (260)
Q Consensus 78 ~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~~-~~~~~~~~~~l~- 155 (260)
..+....+++.+++.|+++++||..... ..++.+|++++|..|++.++|... .++....++.++
T Consensus 156 -~~~~~~~~~~~~k~~g~~vv~Dp~~~~~-------------~~~~~~dil~pN~~Ea~~l~g~~~~~~~~~~~~~~l~~ 221 (473)
T PRK11316 156 -ALASVQAMIQLARKAGVPVLIDPKGTDF-------------ERYRGATLLTPNLSEFEAVVGKCKDEAELVEKGMKLIA 221 (473)
T ss_pred -chhHHHHHHHHHHhcCCeEEEeCCCCCc-------------cccCCCeEECcCHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 1246777888999999999999964311 235689999999999999998532 222333445555
Q ss_pred CCCCeEEEEecCCCceEEEecCc-eeeecCcccccccCCCCchHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHhhHH
Q 024908 156 HPNLKLLIVTEGSKGCRYYTKEF-KGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALT 234 (260)
Q Consensus 156 ~~g~~~vivt~G~~G~~~~~~~~-~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~ 234 (260)
+.|++.|+||+|.+|++++.++. .+++|+++++++||+||||+|.|||+++|++|++ +++|+++|+++|+.+
T Consensus 222 ~~g~~~vvVT~G~~G~~~~~~~~~~~~~~~~~v~vvDttGAGDaF~aa~~~~l~~g~~-------~~~al~~A~a~Aa~~ 294 (473)
T PRK11316 222 DYDLSALLVTRSEQGMTLLQPGKAPLHLPTQAREVYDVTGAGDTVISVLAAALAAGNS-------LEEACALANAAAGVV 294 (473)
T ss_pred hcCCCEEEEEecCCCcEEEecCCceEEecCcCCCCCCCCCCcHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHhh
Confidence 58999999999999999888765 5788888889999999999999999999999999 999999999999999
Q ss_pred hhhcCCCCCCCCHHHHHHHHhh
Q 024908 235 VTERGAIPALPTKEAALKLLHT 256 (260)
Q Consensus 235 ~~~~g~~~~~~~~~~l~~~~~~ 256 (260)
+++.|+.+ ++.+++++.++.
T Consensus 295 v~~~G~~~--~~~~~l~~~l~~ 314 (473)
T PRK11316 295 VGKLGTST--VSPIELENALRG 314 (473)
T ss_pred cccCCCcc--CCHHHHHHHHhc
Confidence 99999864 689999988873
No 43
>PLN02630 pfkB-type carbohydrate kinase family protein
Probab=99.96 E-value=4.1e-28 Score=204.25 Aligned_cols=216 Identities=24% Similarity=0.293 Sum_probs=169.1
Q ss_pred CCCCCceEEcCCCCceEEEEEEcc-----CCceeEEEeeCCcccccccccccchhhhcCccEEEEccccCCCchhHHHHH
Q 024908 10 NVDTSGVRYDSTARTALAFVTLRA-----DGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQL 84 (260)
Q Consensus 10 gi~~~~v~~~~~~~T~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~ 84 (260)
||+...+.. ++.+|+.+++++++ +|+++++.. .+++..+++++++...+...+.+++.+ +.+.+...
T Consensus 67 ~v~~~~~~~-~~~~T~~~~~~~~~g~~~~~~e~~i~~~--~ga~~~l~~~di~~~~~~~~~~~~l~~-----ei~~e~~~ 138 (335)
T PLN02630 67 QVSHPPIVI-PDSKTTEFHADFDQGIDGNGHEDRVLKR--VCACDPIEPSDIPDMRYEFGMAVGVAG-----EILPETLE 138 (335)
T ss_pred cccccceec-CCCCceEEEEEEcCCcccCCCCeEEEEe--ccccCCCChHHCCHHHhcccceeeecC-----CCcHHHHH
Confidence 455443333 56689999988776 567787765 677778888888765677777775543 33356788
Q ss_pred HHHHHHHH-----CCCeEEEcCCCC-CCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCCCCCchHHHHHHhcCCC
Q 024908 85 AAMNLAKE-----SGSILSYDPNLR-LPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPN 158 (260)
Q Consensus 85 ~~~~~a~~-----~~~~v~~d~~~~-~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~~~~~~~~~~~~l~~~g 158 (260)
.+++.++. .+..+++||.+. ..+|... ...+.++++++|++++|++|+..+ +.+ .+.+.
T Consensus 139 ~~~~~a~~v~~D~~g~~~~~Dp~~~~~~~~~~~---~~~~~~~L~~iDil~~ne~Ea~~l----~~~-------~~~~~- 203 (335)
T PLN02630 139 RMVEICDVVVVDIQALIRVFDPVDGTVKLVKLE---ETGFYDMLPRIGFLKASSEEALFI----DVE-------EVRQK- 203 (335)
T ss_pred HHHHHhhhheeccCceEEecCCcccccccchhh---HHHHHHHHHhCCEEEecHHHHhhc----CHH-------HHccC-
Confidence 88888887 788899999763 4444211 123567899999999999999986 111 11122
Q ss_pred CeEEEEecCCCceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHhhHHhhhc
Q 024908 159 LKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTER 238 (260)
Q Consensus 159 ~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~~~~~ 238 (260)
+.|+||+|++|++++.++..+++|+++++++|||||||+|+|||++++.+|++ +++|+++|+++|+.++++.
T Consensus 204 -~~vvvt~G~~G~~~~~~~~~~~~~~~~v~~vDttGAGDaF~agfi~~l~~g~~-------~~~a~~~A~a~aa~~v~~~ 275 (335)
T PLN02630 204 -CCVIVTNGKKGCRIYWKDGEMRVPPFPAIQVDPTGAGDSFLGGFVAGLVQGLA-------VPDAALLGNYFGSLAVEQV 275 (335)
T ss_pred -CEEEEEECCCceEEEECCeeEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhCcC
Confidence 38999999999999998888899999899999999999999999999999999 9999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHhhcc
Q 024908 239 GAIPALPTKEAALKLLHTVA 258 (260)
Q Consensus 239 g~~~~~~~~~~l~~~~~~~~ 258 (260)
|. ...+.+++++.+++++
T Consensus 276 G~--~~~~~~~l~~~~~~i~ 293 (335)
T PLN02630 276 GI--PKFDLRQLQRVKDEVQ 293 (335)
T ss_pred CC--CCCCHHHHHHHhhcEE
Confidence 95 4569999999988875
No 44
>cd01946 ribokinase_group_C Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.96 E-value=4.1e-28 Score=200.93 Aligned_cols=219 Identities=20% Similarity=0.279 Sum_probs=159.4
Q ss_pred HHHHHHHCCCCCCceEEcCCCCceEEEEEEc--cCCceeEEEeeCCcccccccccccchhhhcCccEEEEccccCCCchh
Q 024908 2 LANILKENNVDTSGVRYDSTARTALAFVTLR--ADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPC 79 (260)
Q Consensus 2 i~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~ 79 (260)
+++.|++.||+++++.+.++.+|........ .++++..... ......+.+ .+ ...+++++++|++++.
T Consensus 55 ~~~~l~~~gi~~~~v~~~~~~~t~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~-~~~~~~~~~v~~~~~~------ 124 (277)
T cd01946 55 DYKLLNSHNIVTLGLLSKEDGKTFHWAGRYHYDLNEADTLDTD--LNVFADFDP-QL-PEHYKDSEFVFLGNIA------ 124 (277)
T ss_pred HHHHHHhccCcceeEEEecCCCeEEEeeEehhhcccccchhhh--hhHHhhcCC-CC-hHHhhcCCEEEECCCC------
Confidence 6789999999999998877666633211111 1222222111 111111221 12 2456889999998652
Q ss_pred HHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCCCCCchHHHHHHhcCCCC
Q 024908 80 RSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNL 159 (260)
Q Consensus 80 ~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~~~~~~~~~~~~l~~~g~ 159 (260)
.+....+++.+++. .++++||.. +|. ....+.+.++++++|++++|.+|++.++|.. +..++++.+.+.|+
T Consensus 125 ~~~~~~~~~~~~~~-~~v~~D~~~---~~~--~~~~~~~~~~l~~~d~~~~n~~E~~~l~g~~---~~~~~~~~l~~~g~ 195 (277)
T cd01946 125 PELQREVLEQVKDP-KLVVMDTMN---FWI--SIKPEKLKKVLAKVDVVIINDGEARQLTGAA---NLVKAARLILAMGP 195 (277)
T ss_pred HHHHHHHHHHHHhC-CEEEEccHH---Hhh--hhhHHHHHHHhccCCEEeCCHHHHHHHhCCc---hHHHHHHHHHHcCC
Confidence 34566778878776 789999832 342 1234557788999999999999999998864 33346677888999
Q ss_pred eEEEEecCCCceEEEecCceeeecCcccc-cccCCCCchHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHhhHHhhhc
Q 024908 160 KLLIVTEGSKGCRYYTKEFKGRVPGVKTK-AVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTER 238 (260)
Q Consensus 160 ~~vivt~G~~G~~~~~~~~~~~~~~~~~~-~vdt~GaGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~~~~~ 238 (260)
+.|++|+|.+|++++.+++.+++|+++++ ++||+||||+|+|||+++|.+|++. ..+++++|+++|+++|+.+|++.
T Consensus 196 ~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~vDttGAGDaF~Agfl~~l~~~~~~--~~~~~~~a~~~a~~~aa~~~~~~ 273 (277)
T cd01946 196 KALIIKRGEYGALLFTDDGYFAAPAYPLESVFDPTGAGDTFAGGFIGYLASQKDT--SEANMRRAIIYGSAMASFCVEDF 273 (277)
T ss_pred CEEEEecCCCcEEEEECCceEEcCCcccCccCCCCCchHHHHHHHHHHHHhCCCc--chhhHHHHHHHhHHHHhhhhhhc
Confidence 99999999999999988888888888875 8999999999999999999988531 23449999999999999999999
Q ss_pred CCC
Q 024908 239 GAI 241 (260)
Q Consensus 239 g~~ 241 (260)
|+.
T Consensus 274 G~~ 276 (277)
T cd01946 274 GTK 276 (277)
T ss_pred CCC
Confidence 864
No 45
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.95 E-value=1.5e-26 Score=189.31 Aligned_cols=200 Identities=21% Similarity=0.230 Sum_probs=148.4
Q ss_pred HHHHHHCCCCCCceEEcCCCCceEEEEEEccCCceeEEEeeCCcccccccccccchhhhcCccEEEEccccCCCchhHHH
Q 024908 3 ANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRST 82 (260)
Q Consensus 3 ~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~ 82 (260)
++.|++.||++.. + ...+|+.+++.++.+|++++.++. +....... . ...+.++|++|++++. .+.
T Consensus 55 ~~~l~~~gv~~~~--~-~~~~t~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~-~~~~~~~~~~~~~~~~------~~~ 120 (254)
T cd01937 55 WSDLFDNGIEVIS--L-LSTETTTFELNYTNEGRTRTLLAK--CAAIPDTE--S-PLSTITAEIVILGPVP------EEI 120 (254)
T ss_pred HHHHHHCCcEEEE--e-cCCCeEEEEEEecCCCCeeeeecc--ccCCcccc--c-ccccCcccEEEECCCc------chh
Confidence 3678999999642 3 333677776777777888877663 22221211 1 2356789999998752 223
Q ss_pred HHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCCCCCchHHHHHHhcCCCCeEE
Q 024908 83 QLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLKLL 162 (260)
Q Consensus 83 ~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~~~~~~~~~~~~l~~~g~~~v 162 (260)
...+.+.+ .++++|++.....|.. ....+.++++++|++++|.+|++.+ .....+++.+.+.|++.|
T Consensus 121 ~~~~~~~~----~~v~~D~~~~~~~~~~---~~~~~~~~l~~~di~~~n~~E~~~~------~~~~~~~~~l~~~g~~~v 187 (254)
T cd01937 121 SPSLFRKF----AFISLDAQGFLRRANQ---EKLIKCVILKLHDVLKLSRVEAEVI------STPTELARLIKETGVKEI 187 (254)
T ss_pred cHHHHhhh----hheeEccccceeeccc---cchHHHhhcccCcEEEEcHHHHhhc------CCHHHHHHHHHHcCCCEE
Confidence 33333332 6899999754332321 1223577899999999999999983 123346677888999999
Q ss_pred EEecCCCceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHhhHHhh
Q 024908 163 IVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVT 236 (260)
Q Consensus 163 ivt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~~~ 236 (260)
+||+|.+|++++++++.+++++++.+++||+||||+|+|||++++.+|++ +++|+++|+++|+.+++
T Consensus 188 vvt~g~~g~~~~~~~~~~~~~~~~~~~vdt~GAGD~f~a~~~~~l~~g~~-------~~~a~~~a~~~aa~~i~ 254 (254)
T cd01937 188 IVTDGEEGGYIFDGNGKYTIPASKKDVVDPTGAGDVFLAAFLYSRLSGKD-------IKEAAEFAAAAAAKFIE 254 (254)
T ss_pred EEeeCCcceEEEECCccEEccccCceeccCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhC
Confidence 99999999999998888888888888999999999999999999999999 99999999999999864
No 46
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=99.95 E-value=4.9e-27 Score=188.80 Aligned_cols=223 Identities=18% Similarity=0.235 Sum_probs=174.1
Q ss_pred HHHHHHHCCCCCCceEEcCCCCceEEEEEEccCCceeEEEeeCCcccccccccccch----hhhcCccEEEEccccCCCc
Q 024908 2 LANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDK----NLIKQGSIFHYGSISLIAE 77 (260)
Q Consensus 2 i~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~d~v~~~~~~~~~~ 77 (260)
+++.+++.||++.+. +..+.+|++|.+.++.++ |+...+ .++...++.+.+.. ..++++.++|++|+.+.
T Consensus 98 l~~~~~~aGv~~~yq-~~~d~~TGtCavli~~~n-RSL~an--LgAAn~f~~dhl~~~~~~~lveka~v~yv~Gfflt-- 171 (343)
T KOG2854|consen 98 LKSKARAAGVNVHYQ-VKEDGPTGTCAVLITGDN-RSLCAN--LGAANCFKVDHLDKEENWALVEKAKVFYVAGFFLT-- 171 (343)
T ss_pred HHHHHHhcCceEEEE-eccCCCCceEEEEEeCCC-cchhhc--cchhhccCHHHhcchhhhhhhhheeEEEEEEEEEE--
Confidence 678899999999875 566789999999998777 777665 56666788777743 57899999999998763
Q ss_pred hhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCC---CCCchH--HHHH
Q 024908 78 PCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGD---DHNDDN--VVLE 152 (260)
Q Consensus 78 ~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~---~~~~~~--~~~~ 152 (260)
.+.+.++.+.+.+.+.+.+.+.+.+.+.. .....+.+..+++++|+++.|++|++++.... +.+... ....
T Consensus 172 v~p~ai~~v~qh~~e~~r~~~lnlsapfI----~q~~~~~l~~v~~y~DiifgNe~EA~af~~~~~~~t~dv~eia~~~~ 247 (343)
T KOG2854|consen 172 VSPDAIRKVAQHAAENNRVFTLNLSAPFI----SQFFKDALDKVLPYADIIFGNEDEAAAFARAHGWETKDVKEIALKLS 247 (343)
T ss_pred eChHHHHHHHHHHHHhcchhheeccchhH----HHHHHHHHHhhcCcceEEEcCHHHHHHHHHhhCCcccchHHHhhHhh
Confidence 34578888999999888766777654333 34556777889999999999999999986543 222211 1111
Q ss_pred HhcC---CCCeEEEEecCCCceEEEecCceeeecC--ccc-ccccCCCCchHHHHHHHHHHHhcCcccccHHHHHHHHHH
Q 024908 153 KLFH---PNLKLLIVTEGSKGCRYYTKEFKGRVPG--VKT-KAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLF 226 (260)
Q Consensus 153 ~l~~---~g~~~vivt~G~~G~~~~~~~~~~~~~~--~~~-~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~~ 226 (260)
.+-+ ...++++||.|.++++...++....+|. .+. +++||+||||+|++||+++|.+|++ +++|++.
T Consensus 248 ~~~k~~~~~~r~vvit~g~~~~i~~~~~~v~~~~v~~~~~~~ivDtnGAGDaFvgGFl~~l~qg~~-------l~~cir~ 320 (343)
T KOG2854|consen 248 ALPKVNGTRPRTVVITQGPDPVIVAEDGKVTAYPVLPLPVEEIVDTNGAGDAFVGGFLSQLVQGKS-------LEECIRA 320 (343)
T ss_pred ccccccccccceEEEccCCCceEEecCCceEEeccccccceeeeeCCCchHHHHHHHHHHHHcCCC-------HHHHHHH
Confidence 2222 3467899999999999998875555544 333 7999999999999999999999999 9999999
Q ss_pred HHHHhhHHhhhcCCC
Q 024908 227 ANACGALTVTERGAI 241 (260)
Q Consensus 227 a~~~Aa~~~~~~g~~ 241 (260)
|+-+|+..++..|..
T Consensus 321 g~~aa~~vi~~~G~~ 335 (343)
T KOG2854|consen 321 GSYAASHVIRRVGCT 335 (343)
T ss_pred HHHHhhheeeccCCC
Confidence 999999999999975
No 47
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.90 E-value=2.7e-22 Score=165.11 Aligned_cols=224 Identities=23% Similarity=0.228 Sum_probs=174.6
Q ss_pred HHHHHHHCCCCCCceEEcCCCCceEEEEEEccCCceeEEEeeCCcccccccccccc---hhhhcCccEEEEccccCCCch
Q 024908 2 LANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELD---KNLIKQGSIFHYGSISLIAEP 78 (260)
Q Consensus 2 i~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~v~~~~~~~~~~~ 78 (260)
+.+.|...||+.. +...++.+|.+...++..+.+..-+-+. ..........+. ...+.+.|.+++|.|.-..-
T Consensus 82 L~~~l~~~~i~~~-l~~~~~r~T~~K~Rv~s~nQQllRvD~E--e~~~~~~~~~ll~~~~~~l~~~~~vVLSDY~KG~L- 157 (467)
T COG2870 82 LIELLKANGIDSD-LLRDKNRPTIVKLRVLSRNQQLLRLDFE--EKFPIEDENKLLEKIKNALKSFDALVLSDYAKGVL- 157 (467)
T ss_pred HHHHHHhcCcccc-eEeecCCCceeeeeeecccceEEEeccc--ccCcchhHHHHHHHHHHHhhcCCEEEEeccccccc-
Confidence 5678999999965 4567788999999998765553322221 111111111111 25778999999998765332
Q ss_pred hHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCCCCCc-hHHHHHHhcC-
Q 024908 79 CRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHND-DNVVLEKLFH- 156 (260)
Q Consensus 79 ~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~~~~~-~~~~~~~l~~- 156 (260)
..+..+++.|++.|++|.+||.++.. +....+.+++||..|+++..|....++ ..+..+.|.+
T Consensus 158 --~~~q~~I~~ar~~~~pVLvDPKg~Df-------------~~Y~GAtLiTPN~~E~~~~vg~~~~e~el~~~g~kL~~~ 222 (467)
T COG2870 158 --TNVQKMIDLAREAGIPVLVDPKGKDF-------------EKYRGATLITPNLKEFEEAVGKCKSEEELEERGQKLKEE 222 (467)
T ss_pred --hhHHHHHHHHHHcCCcEEECCCCcch-------------hhhCCCeecCCCHHHHHHHHcccccHHHHHHHHHHHHHh
Confidence 12677899999999999999975432 245589999999999999999875543 3344555664
Q ss_pred CCCeEEEEecCCCceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHhhHHhh
Q 024908 157 PNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVT 236 (260)
Q Consensus 157 ~g~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~~~ 236 (260)
.+...++||++++|..++.+++..|+|+...++.|.|||||+-.|.|.++|+.|.+ +++|+.+||++|+..+.
T Consensus 223 ~~L~alLvTRsE~GMtL~~~~~~~h~pt~AkEVyDVTGAGDTVIa~la~~laaG~s-------~~eAc~lAN~AagiVVg 295 (467)
T COG2870 223 LDLSALLVTRSEKGMTLFQEGKPLHFPARAKEVYDVTGAGDTVIAVLAAALAAGAS-------LEEACELANAAAGIVVG 295 (467)
T ss_pred hCcceEEEEeccCCceeecCCcccccchhheeeeeccCCCchHHHHHHHHHHcCCC-------HHHHHHHhhhhcceEEe
Confidence 78899999999999999998877999998889999999999999999999999999 99999999999999999
Q ss_pred hcCCCCCCCCHHHHHHH
Q 024908 237 ERGAIPALPTKEAALKL 253 (260)
Q Consensus 237 ~~g~~~~~~~~~~l~~~ 253 (260)
+.|+. ..+.+||...
T Consensus 296 KlGTa--tvs~~EL~nA 310 (467)
T COG2870 296 KLGTA--TVSPEELEMA 310 (467)
T ss_pred eccce--eecHHHHHhh
Confidence 99985 4788888773
No 48
>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=99.89 E-value=3.4e-22 Score=153.77 Aligned_cols=219 Identities=21% Similarity=0.239 Sum_probs=157.8
Q ss_pred CHHHHHHHCCCCCCceEEcCCCCceEEEEEEccCCceeEEEeeCCcccccccccccchhhhcCccEEEEccccCCCchhH
Q 024908 1 MLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCR 80 (260)
Q Consensus 1 ~i~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~ 80 (260)
+|++.|++.|||++++......+...++++....|.|+++++ ..+....+..++..-.++++.|||+.+-+... ..
T Consensus 72 ~lLddl~~rgIdishcpftd~~pp~ssiI~~r~s~trTil~~--dks~p~vT~~dF~kvdl~qy~WihfE~Rnp~e--tl 147 (308)
T KOG2947|consen 72 FLLDDLRRRGIDISHCPFTDHSPPFSSIIINRNSGTRTILYC--DKSLPDVTATDFEKVDLTQYGWIHFEARNPSE--TL 147 (308)
T ss_pred HHHHHHHhcCCCcccCccccCCCCcceEEEecCCCceEEEEe--cCCCccccHHHhhhcccceeeeEEEecCChHH--HH
Confidence 478999999999999987766555556666557788999888 44566688888887788999999998764311 12
Q ss_pred HHHHHHHHHHH----HCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCCCCCchHH-HHHHhc
Q 024908 81 STQLAAMNLAK----ESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNV-VLEKLF 155 (260)
Q Consensus 81 ~~~~~~~~~a~----~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~~~~~~~~-~~~~l~ 155 (260)
+.++.+.+.=. +.++.+++|+.. ..+....++..+|+++..++-++.+ |..++.+... +..+..
T Consensus 148 kM~~~I~~~N~r~pe~qrI~vSvd~en----------~req~~~l~am~DyVf~sK~~a~~~-gfks~rea~~~l~~r~~ 216 (308)
T KOG2947|consen 148 KMLQRIDAHNTRQPEEQRIRVSVDVEN----------PREQLFQLFAMCDYVFVSKDVAKHL-GFKSPREACEGLYGRVP 216 (308)
T ss_pred HHHHHHHHhhcCCCccceEEEEEEecC----------cHHHHHHHhhcccEEEEEHHHHhhh-ccCCHHHHHHHHHhhcc
Confidence 22222222111 134567778642 2445667888999999999877775 6665555432 111222
Q ss_pred C-CCCeEEEEecCCCceEEEec-CceeeecCccc-ccccCCCCchHHHHHHHHHH-HhcCcccccHHHHHHHHHHHHHHh
Q 024908 156 H-PNLKLLIVTEGSKGCRYYTK-EFKGRVPGVKT-KAVDTTGAGDSFVSGILNCL-AADQNLIKDENRLREALLFANACG 231 (260)
Q Consensus 156 ~-~g~~~vivt~G~~G~~~~~~-~~~~~~~~~~~-~~vdt~GaGDaf~Ag~~~~l-~~g~~~~~~~~~~~~a~~~a~~~A 231 (260)
+ ...+.+|+-++.+|+-.... ++.+++++.+. ++||+.|+||+|+||++|++ .++.+ +.+|+.||+++|
T Consensus 217 ~~~pkpv~I~~w~~eGA~~l~adg~yfev~a~~ppkvVD~lg~~DtF~A~vIyA~lk~~r~-------l~eAvdfg~rva 289 (308)
T KOG2947|consen 217 KGKPKPVLICPWASEGAGALGADGKYFEVDAFKPPKVVDTLGAGDTFNAGVIYALLKQGRS-------LAEAVDFGNRVA 289 (308)
T ss_pred cCCCCcEEEeccccccccccCCCCCEEecCCCCCccceeeccCCCcchHHHHHHHHHhhhh-------HHHHHHHHHHhh
Confidence 2 22345788899999877654 47778887664 79999999999999999995 55777 999999999999
Q ss_pred hHHhhhcCCC
Q 024908 232 ALTVTERGAI 241 (260)
Q Consensus 232 a~~~~~~g~~ 241 (260)
+.++...|.-
T Consensus 290 s~Kl~g~Gfd 299 (308)
T KOG2947|consen 290 SKKLGGQGFD 299 (308)
T ss_pred hccccccccc
Confidence 9999998863
No 49
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=99.88 E-value=1.9e-21 Score=159.05 Aligned_cols=167 Identities=21% Similarity=0.106 Sum_probs=129.4
Q ss_pred cCccEEEEccccCCCchhHHHHHHHHHHHHHC--CCeEEEcCCCC--CCCCCCHHHHHHHHHHHhh-hCCEEecCHHHHh
Q 024908 62 KQGSIFHYGSISLIAEPCRSTQLAAMNLAKES--GSILSYDPNLR--LPLWPSEEAAREGIMSIWD-QADIIKVSDDEIT 136 (260)
Q Consensus 62 ~~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~--~~~v~~d~~~~--~~~~~~~~~~~~~~~~~l~-~~dvl~~n~~E~~ 136 (260)
...+.+..+. +......+.+.++++.+++. +.++++||... ..+|...+...+.+.+++. ++|+++||..|++
T Consensus 71 ~~~~~v~~G~--l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~l~~~~dvi~pN~~Ea~ 148 (254)
T cd01173 71 LEYDAVLTGY--LGSAEQVEAVAEIVKRLKEKNPNLLYVCDPVMGDNGKLYVVAEEIVPVYRDLLVPLADIITPNQFELE 148 (254)
T ss_pred ccCCEEEEec--CCCHHHHHHHHHHHHHHHHhCCCceEEECCCCCcCCcceecChhHHHHHHHHHHhcCCEECCcHHHHH
Confidence 4567775553 34456778899999998876 88999999643 2444323445556666666 9999999999999
Q ss_pred hhcCCCCC--CchHHHHHHhcCCCCeEEEEecCCC------ceEEEecCceeeecCcccc-cccCCCCchHHHHHHHHHH
Q 024908 137 FLTGGDDH--NDDNVVLEKLFHPNLKLLIVTEGSK------GCRYYTKEFKGRVPGVKTK-AVDTTGAGDSFVSGILNCL 207 (260)
Q Consensus 137 ~l~g~~~~--~~~~~~~~~l~~~g~~~vivt~G~~------G~~~~~~~~~~~~~~~~~~-~vdt~GaGDaf~Ag~~~~l 207 (260)
.++|.+.. ++..++++.|.+.|++.|+||.|.. |++++.+++.+.++.+..+ ++|++||||+|+|||+++|
T Consensus 149 ~l~g~~~~~~~~~~~~~~~l~~~g~~~Vvit~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~GaGD~f~a~~~~~l 228 (254)
T cd01173 149 LLTGKKINDLEDAKAAARALHAKGPKTVVVTSVELADDDRIEMLGSTATEAWLVQRPKIPFPAYFNGTGDLFAALLLARL 228 (254)
T ss_pred HHcCCCcCCHHHHHHHHHHHHHhCCCEEEEEeeccCCCCcEEEEEEecCccEEEEeeccCCCCCcCChHHHHHHHHHHHH
Confidence 99997633 3445577888889999999999975 7887776655545444445 7999999999999999999
Q ss_pred HhcCcccccHHHHHHHHHHHHHHhhHHhhh
Q 024908 208 AADQNLIKDENRLREALLFANACGALTVTE 237 (260)
Q Consensus 208 ~~g~~~~~~~~~~~~a~~~a~~~Aa~~~~~ 237 (260)
++|++ +++|+++|+++....++.
T Consensus 229 ~~g~~-------~~~a~~~A~~~~~~~i~~ 251 (254)
T cd01173 229 LKGKS-------LAEALEKALNFVHEVLEA 251 (254)
T ss_pred HcCCC-------HHHHHHHHHHHHHHHHHH
Confidence 99999 999999999988777654
No 50
>PRK05756 pyridoxamine kinase; Validated
Probab=99.88 E-value=2.5e-21 Score=160.89 Aligned_cols=168 Identities=19% Similarity=0.116 Sum_probs=131.4
Q ss_pred hcCccEEEEccccCCCchhHHHHHHHHHHHHHCC--CeEEEcCCCCCC---CCCCHHHHHHHHHHHhhhCCEEecCHHHH
Q 024908 61 IKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESG--SILSYDPNLRLP---LWPSEEAAREGIMSIWDQADIIKVSDDEI 135 (260)
Q Consensus 61 ~~~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~--~~v~~d~~~~~~---~~~~~~~~~~~~~~~l~~~dvl~~n~~E~ 135 (260)
+..++.+..+. +.+....+.+.++++++++.+ ..+++||..... .|............+++++|+++||..|+
T Consensus 72 l~~~~~v~~G~--l~~~~~~~~v~~~i~~~k~~~~~~~~v~DPv~~d~~~~~~~~~~~~~~~~~~ll~~adiitpN~~Ea 149 (286)
T PRK05756 72 LGECDAVLSGY--LGSAEQGEAILDAVRRVKAANPQALYFCDPVMGDPEKGCIVAPGVAEFLRDRALPAADIITPNLFEL 149 (286)
T ss_pred cccCCEEEECC--CCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCCCEEECccHhHHHHHhhcccccEecCCHHHH
Confidence 35778775553 445566788888998888765 568899976552 34333344445556899999999999999
Q ss_pred hhhcCCCC--CCchHHHHHHhcCCCCeEEEEecCCC--------ceEEEecCceeeecCccccc-ccCCCCchHHHHHHH
Q 024908 136 TFLTGGDD--HNDDNVVLEKLFHPNLKLLIVTEGSK--------GCRYYTKEFKGRVPGVKTKA-VDTTGAGDSFVSGIL 204 (260)
Q Consensus 136 ~~l~g~~~--~~~~~~~~~~l~~~g~~~vivt~G~~--------G~~~~~~~~~~~~~~~~~~~-vdt~GaGDaf~Ag~~ 204 (260)
+.|+|... .++..++++.+.+.|++.|+||.|.. |++++++++.++++.++++. +|++||||+|+|+|+
T Consensus 150 ~~L~g~~~~~~~~~~~~~~~l~~~g~~~Vvvt~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~GaGD~f~a~~~ 229 (286)
T PRK05756 150 EWLSGRPVETLEDAVAAARALIARGPKIVLVTSLARAGYPADRFEMLLVTADGAWHISRPLVDFMRQPVGVGDLTSALFL 229 (286)
T ss_pred HHHhCCCcCCHHHHHHHHHHHHHhCCCEEEEeccccCCCCCCcEEEEEEECCceEEEecCccCCCCCCCChHHHHHHHHH
Confidence 99999653 33445577888889999999999876 47777777666677666677 799999999999999
Q ss_pred HHHHhcCcccccHHHHHHHHHHHHHHhhHHhhh
Q 024908 205 NCLAADQNLIKDENRLREALLFANACGALTVTE 237 (260)
Q Consensus 205 ~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~~~~ 237 (260)
++|++|++ +++|+++|++.....++.
T Consensus 230 a~l~~g~~-------~~~al~~A~~~~~~~i~~ 255 (286)
T PRK05756 230 ARLLQGGS-------LEEALEHTTAAVYEVMAR 255 (286)
T ss_pred HHHhcCCC-------HHHHHHHHHHHHHHHHHH
Confidence 99999999 999999999999988875
No 51
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=99.87 E-value=3.1e-21 Score=151.59 Aligned_cols=136 Identities=29% Similarity=0.362 Sum_probs=112.0
Q ss_pred ccEEEEccccCCCchhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCCC
Q 024908 64 GSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDD 143 (260)
Q Consensus 64 ~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~~ 143 (260)
+|++|+++..+. .+.+..+++.+++.+.++++|+..+...|.. ..+.++++++|++++|.+|++.+++...
T Consensus 58 ~~~v~i~~~~~~----~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~-----~~~~~~~~~~dvl~~n~~E~~~l~~~~~ 128 (196)
T cd00287 58 ADAVVISGLSPA----PEAVLDALEEARRRGVPVVLDPGPRAVRLDG-----EELEKLLPGVDILTPNEEEAEALTGRRD 128 (196)
T ss_pred ccEEEEecccCc----HHHHHHHHHHHHHcCCeEEEeCCcccccccc-----chHHHHHhhCCEECCCHHHHHHHhCCCC
Confidence 889999886433 3577788889999999999999877665432 1156788899999999999999998754
Q ss_pred CC--chHHHHHHhcCCCCeEEEEecCCCceEEEe-cCceeeecCcccccccCCCCchHHHHHHHHHHH
Q 024908 144 HN--DDNVVLEKLFHPNLKLLIVTEGSKGCRYYT-KEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLA 208 (260)
Q Consensus 144 ~~--~~~~~~~~l~~~g~~~vivt~G~~G~~~~~-~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~ 208 (260)
.+ +..+.++.+.+.+++.+++|+|++|++++. ++..+++|+++.+++||+||||+|+|||++++.
T Consensus 129 ~~~~~~~~~~~~l~~~g~~~vvvt~G~~g~~~~~~~~~~~~~~~~~~~~vdt~GAGD~f~ag~~~~l~ 196 (196)
T cd00287 129 LEVKEAAEAAALLLSKGPKVVIVTLGEKGAIVATRGGTEVHVPAFPVKVVDTTGAGDAFLAALAAGLA 196 (196)
T ss_pred CChHHHHHHHHHHHhcCCCEEEEEECCCccEEEecCCceEEcCCccCCcccCCCchHHHHHHHHHHhC
Confidence 43 233466788889999999999999999998 677788888878899999999999999999873
No 52
>PRK07105 pyridoxamine kinase; Validated
Probab=99.87 E-value=7.7e-21 Score=157.74 Aligned_cols=184 Identities=20% Similarity=0.158 Sum_probs=134.0
Q ss_pred CccEEEEccccCCCchhHHHHHHHHHHHHHCCCeEEEcCCCCC--CCCCC-HHHHHHHHHHHhhhCCEEecCHHHHhhhc
Q 024908 63 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRL--PLWPS-EEAAREGIMSIWDQADIIKVSDDEITFLT 139 (260)
Q Consensus 63 ~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~--~~~~~-~~~~~~~~~~~l~~~dvl~~n~~E~~~l~ 139 (260)
.+|.|+++. +......+.+..+++.+++.+.++++||.... .+|.. .+...+.+.++++++|+++||..|++.|+
T Consensus 75 ~~~aik~G~--l~~~~~~~~v~~~~~~~~~~~~~vv~DPv~~~~~~l~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L~ 152 (284)
T PRK07105 75 KFDAIYSGY--LGSPRQIQIVSDFIKYFKKKDLLVVVDPVMGDNGKLYQGFDQEMVEEMRKLIQKADVITPNLTEACLLL 152 (284)
T ss_pred ccCEEEECc--CCCHHHHHHHHHHHHHhccCCCeEEECCccccCCcCCCCCCHHHHHHHHHHHhhCCEecCCHHHHHHHc
Confidence 678888774 33444456666677666777889999997543 34431 23345566789999999999999999999
Q ss_pred CCCC------CCchHHHHHHhcCCCCeEEEEec-----CCCceEEEecC--ceeeecCcccccccCCCCchHHHHHHHHH
Q 024908 140 GGDD------HNDDNVVLEKLFHPNLKLLIVTE-----GSKGCRYYTKE--FKGRVPGVKTKAVDTTGAGDSFVSGILNC 206 (260)
Q Consensus 140 g~~~------~~~~~~~~~~l~~~g~~~vivt~-----G~~G~~~~~~~--~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~ 206 (260)
|.+. .++...+++.+.+.|++.|+||. |..|+++++++ ..+..+.+.. .+|++||||+|+|+|+++
T Consensus 153 g~~~~~~~~~~~~~~~~a~~l~~~g~~~Vvvt~~~~~~g~~g~~~~~~~~~~~~~~~~~~~-~~~~~GaGD~f~aa~~~~ 231 (284)
T PRK07105 153 DKPYLEKSYSEEEIKQLLRKLADLGPKIVIITSVPFEDGKIGVAYYDRATDRFWKVFCKYI-PAHYPGTGDIFTSVITGS 231 (284)
T ss_pred CCCcCcCCCCHHHHHHHHHHHHhcCCCEEEEcCeeeCCCeEEEEEEeCCCCeEEEEeeccc-CCCcCChhHHHHHHHHHH
Confidence 9652 23344577888889999999998 66788887653 3344444333 489999999999999999
Q ss_pred HHhcCcccccHHHHHHHHHHHHHHhhHHhhhcCCCC----CCCCHHHHHHHHhh
Q 024908 207 LAADQNLIKDENRLREALLFANACGALTVTERGAIP----ALPTKEAALKLLHT 256 (260)
Q Consensus 207 l~~g~~~~~~~~~~~~a~~~a~~~Aa~~~~~~g~~~----~~~~~~~l~~~~~~ 256 (260)
|++|++ +++|+++|.+++...+++..... .-...|.+...+..
T Consensus 232 l~~g~~-------l~~av~~A~~~~~~~i~~~~~~~~~~~~~i~~~~~l~~~~~ 278 (284)
T PRK07105 232 LLQGDS-------LPIALDRAVQFIEKGIRATLGLKYDLREGILLEKVLGYLIA 278 (284)
T ss_pred HhCCCC-------HHHHHHHHHHHHHHHHHHHHhcCCchhhCccHHHHHHHHHH
Confidence 999999 99999999999998888643331 11345555554443
No 53
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=99.86 E-value=9.6e-21 Score=157.38 Aligned_cols=167 Identities=19% Similarity=0.168 Sum_probs=125.0
Q ss_pred hcCccEEEEccccCCCchhHHHHHHHHHHHHHCC--CeEEEcCCCCCC---CCCCHHHHHHHH-HHHhhhCCEEecCHHH
Q 024908 61 IKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESG--SILSYDPNLRLP---LWPSEEAAREGI-MSIWDQADIIKVSDDE 134 (260)
Q Consensus 61 ~~~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~--~~v~~d~~~~~~---~~~~~~~~~~~~-~~~l~~~dvl~~n~~E 134 (260)
++++|+++.+. +....+.+.+.++++.+++.+ ..+++||..... .|... ...+.+ ..+++++|+++||..|
T Consensus 72 ~~~~d~v~~G~--l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~d~~~~~~~~~-~~~~~~~~~ll~~adii~pN~~E 148 (286)
T TIGR00687 72 LNQCDAVLSGY--LGSAEQVAMVVGIVRQVKQANPQALYVCDPVMGDPEKGCYVAP-DLLEVYREKAIPVADIITPNQFE 148 (286)
T ss_pred cccCCEEEECC--CCCHHHHHHHHHHHHHHHHhCCCCcEEECCeeeeCCCCeeeCh-hHHHHHHHhccccccEecCCHHH
Confidence 35888886654 445556778888998888765 668899954422 23222 333444 4588999999999999
Q ss_pred HhhhcCCCC--CCchHHHHHHhcCCCCeEEEEe-cCCCce--------EEEecCceeeecCcccc-cccCCCCchHHHHH
Q 024908 135 ITFLTGGDD--HNDDNVVLEKLFHPNLKLLIVT-EGSKGC--------RYYTKEFKGRVPGVKTK-AVDTTGAGDSFVSG 202 (260)
Q Consensus 135 ~~~l~g~~~--~~~~~~~~~~l~~~g~~~vivt-~G~~G~--------~~~~~~~~~~~~~~~~~-~vdt~GaGDaf~Ag 202 (260)
++.++|.+. .++..++++.+.+.|++.|+|| .|.+|+ +++.+++.++.+.+..+ ++|++||||+|+||
T Consensus 149 a~~L~g~~~~~~~~~~~~~~~l~~~g~~~Viit~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~A~ 228 (286)
T TIGR00687 149 LELLTGRKINTVEEALAAADALIAMGPDIVLVTHLARAGSQRDRDFEGLVVTQEGRWHISRPLAVFMRQPVGTGDLIAAL 228 (286)
T ss_pred HHHHhCCCcCCHHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcceeEEEEcCCceEEEeccCcCCCCCCCChHHHHHHH
Confidence 999999753 3344456788888999999999 687775 44555556666666666 68999999999999
Q ss_pred HHHHHHhcCcccccHHHHHHHHHHHHHHhhHHhhh
Q 024908 203 ILNCLAADQNLIKDENRLREALLFANACGALTVTE 237 (260)
Q Consensus 203 ~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~~~~ 237 (260)
|++++++|++ +++|+++|+++....+..
T Consensus 229 ~l~~l~~g~~-------~~~al~~A~~~v~~~l~~ 256 (286)
T TIGR00687 229 LLATLLHGNS-------LKEALEKTVSAVYHVLVT 256 (286)
T ss_pred HHHHHhcCCC-------HHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999994444433
No 54
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=99.86 E-value=2.5e-20 Score=152.29 Aligned_cols=162 Identities=19% Similarity=0.135 Sum_probs=127.2
Q ss_pred CccEEEEccccCCCchhHHHHHHHHHHHHHCCC-eEEEcCCCCC----CCCCCHHHHHHHHHHHhhhCCEEecCHHHHhh
Q 024908 63 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESGS-ILSYDPNLRL----PLWPSEEAAREGIMSIWDQADIIKVSDDEITF 137 (260)
Q Consensus 63 ~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~v~~d~~~~~----~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~ 137 (260)
+.+.+.++.+ . +.+.+..+++.+++.+. ++++||..+. .++ +.+........+++++|+++||..|++.
T Consensus 67 ~~~aikiG~l--~---~~~~~~~i~~~~~~~~~~~vVlDPv~~~~~g~~l~-~~~~~~~~~~~ll~~~dvitpN~~Ea~~ 140 (254)
T TIGR00097 67 PVDAAKTGML--A---SAEIVEAVARKLREYPVRPLVVDPVMVAKSGAPLL-EEEAIEALRKRLLPLATLITPNLPEAEA 140 (254)
T ss_pred CCCEEEECCc--C---CHHHHHHHHHHHHhcCCCcEEECCccccCCCCcCC-CHHHHHHHHHhccccccEecCCHHHHHH
Confidence 4677888753 2 23577778888888888 6999996543 222 2222233445688999999999999999
Q ss_pred hcCCCCC--CchHHHHHHhcCCCCeEEEEecCC----Cce-EEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhc
Q 024908 138 LTGGDDH--NDDNVVLEKLFHPNLKLLIVTEGS----KGC-RYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAAD 210 (260)
Q Consensus 138 l~g~~~~--~~~~~~~~~l~~~g~~~vivt~G~----~G~-~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g 210 (260)
|+|.... ++..++++.|.+.|++.|+||.|. +|. +++.++..++++.++++.+|++|+||+|+|+|+++|++|
T Consensus 141 L~g~~~~~~~~~~~~a~~l~~~g~~~Vvvt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~aalaa~la~g 220 (254)
T TIGR00097 141 LLGTKIRTEQDMIKAAKKLRELGPKAVLIKGGHLEGDQAVDVLFDGGEIHILKAPRIETKNTHGTGCTLSAAIAANLAKG 220 (254)
T ss_pred HhCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCceeEEEEECCeEEEEEecccCCCCCCChHHHHHHHHHHHHHCC
Confidence 9986532 344567788888999999999996 344 566676667788888889999999999999999999999
Q ss_pred CcccccHHHHHHHHHHHHHHhhHHhhh
Q 024908 211 QNLIKDENRLREALLFANACGALTVTE 237 (260)
Q Consensus 211 ~~~~~~~~~~~~a~~~a~~~Aa~~~~~ 237 (260)
++ +++|+++|.+++...+.+
T Consensus 221 ~~-------l~eA~~~A~~~~~~~i~~ 240 (254)
T TIGR00097 221 LS-------LKEAVKEAKEFVTGAIRY 240 (254)
T ss_pred CC-------HHHHHHHHHHHHHHHHHH
Confidence 99 999999999999999876
No 55
>PRK12412 pyridoxal kinase; Reviewed
Probab=99.86 E-value=2.7e-20 Score=153.06 Aligned_cols=163 Identities=17% Similarity=0.080 Sum_probs=125.6
Q ss_pred CccEEEEccccCCCchhHHHHHHHHHHHHHCCCe-EEEcCCCCCCC---CCCHHHHHHHHHHHhhhCCEEecCHHHHhhh
Q 024908 63 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSI-LSYDPNLRLPL---WPSEEAAREGIMSIWDQADIIKVSDDEITFL 138 (260)
Q Consensus 63 ~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-v~~d~~~~~~~---~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l 138 (260)
+.|.+.++.+. +.+.+..+.+.+++.+.+ +++||...... .............+++++|+++||..|++.|
T Consensus 72 ~~~~ikiG~l~-----~~~~v~~i~~~~~~~~~~~vv~DPv~~~~~g~~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L 146 (268)
T PRK12412 72 GVDALKTGMLG-----SVEIIEMVAETIEKHNFKNVVVDPVMVCKGADEALHPETNDCLRDVLVPKALVVTPNLFEAYQL 146 (268)
T ss_pred CCCEEEECCCC-----CHHHHHHHHHHHHhcCCCCEEECcCeeeCCCCcCCChHHHHHHHHhhhccceEEcCCHHHHHHH
Confidence 37888887542 245667777777777765 99999653321 0012223344556889999999999999999
Q ss_pred cCCCC--CCchHHHHHHhcCCCCeEEEEecCCCce------EEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhc
Q 024908 139 TGGDD--HNDDNVVLEKLFHPNLKLLIVTEGSKGC------RYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAAD 210 (260)
Q Consensus 139 ~g~~~--~~~~~~~~~~l~~~g~~~vivt~G~~G~------~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g 210 (260)
+|.+. .++...+++.|.+.|++.|+||.|.+|. +++.++..++++.++++.+|++||||+|+|+|+++|++|
T Consensus 147 ~g~~~~~~~~~~~aa~~l~~~g~~~ViIt~G~~g~~~~~~~~~~~~~~~~~~~~~~v~~~~t~GaGD~f~aa~aa~l~~g 226 (268)
T PRK12412 147 SGVKINSLEDMKEAAKKIHALGAKYVLIKGGSKLGTETAIDVLYDGETFDLLESEKIDTTNTHGAGCTYSAAITAELAKG 226 (268)
T ss_pred hCcCCCCHHHHHHHHHHHHhcCCCEEEEeccCCCCCCceEEEEEeCCEEEEEEeCccCCCCCCchHHHHHHHHHHHHHCC
Confidence 99753 3345567788989999999999998753 345555556777777889999999999999999999999
Q ss_pred CcccccHHHHHHHHHHHHHHhhHHhhh
Q 024908 211 QNLIKDENRLREALLFANACGALTVTE 237 (260)
Q Consensus 211 ~~~~~~~~~~~~a~~~a~~~Aa~~~~~ 237 (260)
++ +++|+++|.++....++.
T Consensus 227 ~~-------l~eA~~~A~~~~~~~i~~ 246 (268)
T PRK12412 227 KP-------VKEAVKTAKEFITAAIRY 246 (268)
T ss_pred CC-------HHHHHHHHHHHHHHHHHH
Confidence 99 999999999999988876
No 56
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=99.86 E-value=1.7e-20 Score=153.32 Aligned_cols=149 Identities=17% Similarity=0.206 Sum_probs=116.2
Q ss_pred HHHHHHHHHH-HCCCeEEEcCCCCCCCCC--CHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCCCC--CchHHHHHHhcC
Q 024908 82 TQLAAMNLAK-ESGSILSYDPNLRLPLWP--SEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDH--NDDNVVLEKLFH 156 (260)
Q Consensus 82 ~~~~~~~~a~-~~~~~v~~d~~~~~~~~~--~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~~~--~~~~~~~~~l~~ 156 (260)
....+++..+ ..+.++++||..+...|. +.+.....+.++++++|+++||..|++.++|.+.. ++..++++.+.+
T Consensus 84 ~~~~~~~~~~~~~~~~vv~DPv~~~~~~~~~~~~~~~~~l~~ll~~~dli~pN~~E~~~L~g~~~~~~~~~~~~a~~l~~ 163 (253)
T PRK12413 84 IAEQALDFIKGHPGIPVVLDPVLVCKETHDVEVSELRQELIQFFPYVTVITPNLVEAELLSGKEIKTLEDMKEAAKKLYD 163 (253)
T ss_pred HHHHHHHHHHhCCCCCEEEcCceecCCCCccccHHHHHHHHHHhccCcEECCCHHHHHHHhCcCCCCHHHHHHHHHHHHH
Confidence 3444444444 468899999998888773 34455666667899999999999999999997532 344557788888
Q ss_pred CCCeEEEEecCCCce------EEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHH
Q 024908 157 PNLKLLIVTEGSKGC------RYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANAC 230 (260)
Q Consensus 157 ~g~~~vivt~G~~G~------~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~ 230 (260)
.|++.|+||.|.+|. +++.+ +..+.++.+...+|++||||+|+|+|+++|.+|++ +++|+++|.++
T Consensus 164 ~g~~~Vvvt~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~GaGDaf~a~~~~~l~~g~~-------l~ea~~~A~~~ 235 (253)
T PRK12413 164 LGAKAVVIKGGNRLSQKKAIDLFYDG-KEFVILESPVLEKNNIGAGCTFASSIASQLVKGKS-------PLEAVKNSKDF 235 (253)
T ss_pred cCCCEEEEeCCCCCCCCcceEEEEcC-CEEEEEeecccCCCCCChHHHHHHHHHHHHHcCCC-------HHHHHHHHHHH
Confidence 999999999998642 34444 34445555667799999999999999999999999 99999999999
Q ss_pred hhHHhhhc
Q 024908 231 GALTVTER 238 (260)
Q Consensus 231 Aa~~~~~~ 238 (260)
....+++.
T Consensus 236 ~~~~l~~~ 243 (253)
T PRK12413 236 VYQAIQQS 243 (253)
T ss_pred HHHHHHHH
Confidence 88888764
No 57
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed
Probab=99.85 E-value=6.5e-20 Score=151.69 Aligned_cols=166 Identities=14% Similarity=0.106 Sum_probs=124.4
Q ss_pred cCccEEEEccccCCCchhHHHHHHHHHHHHH--CCCeEEEcCCCCC---CCCCCHHHHHHHHHHHhhhCCEEecCHHHHh
Q 024908 62 KQGSIFHYGSISLIAEPCRSTQLAAMNLAKE--SGSILSYDPNLRL---PLWPSEEAAREGIMSIWDQADIIKVSDDEIT 136 (260)
Q Consensus 62 ~~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~--~~~~v~~d~~~~~---~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~ 136 (260)
.++|.|++|.+ .+....+.+.+++++.+. .+.++++||.... .+|.+..........+++++|+++||..|++
T Consensus 87 ~~~d~i~~G~l--~s~~~~~~i~~~l~~~~~~~~~~~vv~DPvm~d~~~~~~~~~~~~~~~~~~Ll~~advitPN~~Ea~ 164 (281)
T PRK08176 87 RQLRAVTTGYM--GSASQIKILAEWLTALRADHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQHLLPLAQGLTPNIFELE 164 (281)
T ss_pred ccCCEEEECCC--CCHHHHHHHHHHHHHHHHHCCCCcEEeCCccccCCCCeEECccHHHHHHHHhHhhcCEeCCCHHHHH
Confidence 47899988853 455555666667766554 4678999996433 2443333333333468999999999999999
Q ss_pred hhcCCCC--CCchHHHHHHhcCCCCeEEEEecCCCc-------eEEEecCceeeecCcccccccCCCCchHHHHHHHHHH
Q 024908 137 FLTGGDD--HNDDNVVLEKLFHPNLKLLIVTEGSKG-------CRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCL 207 (260)
Q Consensus 137 ~l~g~~~--~~~~~~~~~~l~~~g~~~vivt~G~~G-------~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l 207 (260)
.|+|.+. .++..++++.|.+.|++.|+||.|..| +++++++..+.. +.+...+|++|+||+|+|+|++++
T Consensus 165 ~L~g~~~~~~~~~~~~~~~l~~~g~~~VvIT~g~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~GaGD~faa~~~a~l 243 (281)
T PRK08176 165 ILTGKPCRTLDSAIAAAKSLLSDTLKWVVITSAAGNEENQEMQVVVVTADSVNVI-SHPRVDTDLKGTGDLFCAELVSGL 243 (281)
T ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCCEEEEeeccCCCCCCcEEEEEEeCCceEEE-ecCccCCCCCChhHHHHHHHHHHH
Confidence 9999753 233445778898999999999999987 566666654433 334445799999999999999999
Q ss_pred HhcCcccccHHHHHHHHHHHHHHhhHHhhh
Q 024908 208 AADQNLIKDENRLREALLFANACGALTVTE 237 (260)
Q Consensus 208 ~~g~~~~~~~~~~~~a~~~a~~~Aa~~~~~ 237 (260)
++|++ +++|+++|...-...++.
T Consensus 244 ~~g~~-------l~~Av~~A~~~v~~~i~~ 266 (281)
T PRK08176 244 LKGKA-------LTDAAHRAGLRVLEVMRY 266 (281)
T ss_pred hcCCC-------HHHHHHHHHHHHHHHHHH
Confidence 99999 999999999888877764
No 58
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=99.85 E-value=9e-20 Score=148.10 Aligned_cols=162 Identities=17% Similarity=0.090 Sum_probs=123.4
Q ss_pred CccEEEEccccCCCchhHHHHHHHHHHHHHC-CCeEEEcCCCCCCCC---CCHHHHHHHHHHHhhhCCEEecCHHHHhhh
Q 024908 63 QGSIFHYGSISLIAEPCRSTQLAAMNLAKES-GSILSYDPNLRLPLW---PSEEAAREGIMSIWDQADIIKVSDDEITFL 138 (260)
Q Consensus 63 ~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~v~~d~~~~~~~~---~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l 138 (260)
+++.+.++.+ .+ .+.+..+.+.+++. +.++++||..+...+ ...+........+++++|+++||..|++.|
T Consensus 68 ~~~~i~~G~l--~~---~~~~~~i~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L 142 (242)
T cd01169 68 PVDAIKIGML--GS---AEIIEAVAEALKDYPDIPVVLDPVMVAKSGDSLLDDDAIEALRELLLPLATLITPNLPEAELL 142 (242)
T ss_pred CCCEEEECCC--CC---HHHHHHHHHHHHhCCCCcEEECCceeCCCCCcccCHHHHHHHHHHhhccCeEEeCCHHHHHHH
Confidence 6788888643 22 34555666666665 788999997654321 112223334456779999999999999999
Q ss_pred cCCCCCC--chHHHHHHhcCCCCeEEEEecCCCc-----eEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcC
Q 024908 139 TGGDDHN--DDNVVLEKLFHPNLKLLIVTEGSKG-----CRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQ 211 (260)
Q Consensus 139 ~g~~~~~--~~~~~~~~l~~~g~~~vivt~G~~G-----~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~ 211 (260)
+|....+ +...+++.+.+.|++.|+||.|.+| .+++.++..++++.++.+++|++|+||+|+|+|+++|++|+
T Consensus 143 ~g~~~~~~~~~~~~~~~l~~~g~~~Vvit~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaGD~f~a~l~a~l~~g~ 222 (242)
T cd01169 143 TGLEIATEEDMMKAAKALLALGAKAVLIKGGHLPGDEAVDVLYDGGGFFEFESPRIDTKNTHGTGCTLSSAIAANLAKGL 222 (242)
T ss_pred hCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEEEEECCcEEEEecceeCCCCCCChHHHHHHHHHHHHHCCC
Confidence 9976432 3344677888899999999999875 35666666777888888889999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHHHhhHHhh
Q 024908 212 NLIKDENRLREALLFANACGALTVT 236 (260)
Q Consensus 212 ~~~~~~~~~~~a~~~a~~~Aa~~~~ 236 (260)
+ +++|+++|++.-...++
T Consensus 223 ~-------~~~A~~~A~~~~~~~i~ 240 (242)
T cd01169 223 S-------LEEAVREAKEYVTQAIR 240 (242)
T ss_pred C-------HHHHHHHHHHHHHHHHH
Confidence 9 99999999998776654
No 59
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=99.84 E-value=1.7e-19 Score=148.42 Aligned_cols=163 Identities=18% Similarity=0.164 Sum_probs=125.4
Q ss_pred CccEEEEccccCCCchhHHHHHHHHHHHHHCCC-eEEEcCCCCC----CCCCCHHHHHHHHHHHhhhCCEEecCHHHHhh
Q 024908 63 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESGS-ILSYDPNLRL----PLWPSEEAAREGIMSIWDQADIIKVSDDEITF 137 (260)
Q Consensus 63 ~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~v~~d~~~~~----~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~ 137 (260)
+.+.+.++.+ .+ .+.+..+.+.+++.+. ++++||..+. .+| ..+.......++++++|+++||..|++.
T Consensus 73 ~~~ai~iG~l--~~---~~~~~~i~~~~~~~~~~~vv~DPv~~~~~~~~~~-~~~~~~~~~~~ll~~~dvitpN~~Ea~~ 146 (266)
T PRK06427 73 RIDAVKIGML--AS---AEIIETVAEALKRYPIPPVVLDPVMIAKSGDPLL-ADDAVAALRERLLPLATLITPNLPEAEA 146 (266)
T ss_pred CCCEEEECCc--CC---HHHHHHHHHHHHhCCCCCEEEcCccccCCCCcCC-CHHHHHHHHHhhhCcCeEEcCCHHHHHH
Confidence 5688888753 23 3456666777777665 7999996443 233 2223333444689999999999999999
Q ss_pred hcCCCCC--Cc-hHHHHHHhcCCCCeEEEEecCC--Cce----EEEecCceeeecCcccccccCCCCchHHHHHHHHHHH
Q 024908 138 LTGGDDH--ND-DNVVLEKLFHPNLKLLIVTEGS--KGC----RYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLA 208 (260)
Q Consensus 138 l~g~~~~--~~-~~~~~~~l~~~g~~~vivt~G~--~G~----~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~ 208 (260)
|+|.+.. ++ ...+++.|.+.|++.|+||.|. +|. ++++++..++++.++.+.+|++|+||+|+|+|+++++
T Consensus 147 L~g~~~~~~~~~~~~~a~~l~~~g~~~Vvit~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~GaGD~f~a~l~~~l~ 226 (266)
T PRK06427 147 LTGLPIADTEDEMKAAARALHALGCKAVLIKGGHLLDGEESVDWLFDGEGEERFSAPRIPTKNTHGTGCTLSAAIAAELA 226 (266)
T ss_pred HhCCCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCceeEEEEeCCcEEEEEeeeECCCCCCChHHHHHHHHHHHHH
Confidence 9997532 22 3457788888999999999998 553 5666666677777777888999999999999999999
Q ss_pred hcCcccccHHHHHHHHHHHHHHhhHHhhhc
Q 024908 209 ADQNLIKDENRLREALLFANACGALTVTER 238 (260)
Q Consensus 209 ~g~~~~~~~~~~~~a~~~a~~~Aa~~~~~~ 238 (260)
+|++ +++|+++|.+++...+++.
T Consensus 227 ~g~~-------l~~A~~~A~~~~~~~i~~~ 249 (266)
T PRK06427 227 KGAS-------LLDAVQTAKDYVTRAIRHA 249 (266)
T ss_pred CCCC-------HHHHHHHHHHHHHHHHHHH
Confidence 9999 9999999999999998873
No 60
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=99.83 E-value=3.2e-19 Score=156.37 Aligned_cols=161 Identities=20% Similarity=0.183 Sum_probs=125.3
Q ss_pred ccEEEEccccCCCchhHHHHHHHHHHHHHCCCeEEEcCCCCC----CCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhc
Q 024908 64 GSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRL----PLWPSEEAAREGIMSIWDQADIIKVSDDEITFLT 139 (260)
Q Consensus 64 ~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~----~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~ 139 (260)
.+.+..+.+. +.+.+..+++.+++.+.++++||..+. .+|. .+........+++++|+++||..|++.|+
T Consensus 72 ~~~ik~G~l~-----~~e~~~~i~~~~k~~g~~vv~DPv~~~~sG~~l~~-~~~~~~l~~~llp~adli~pN~~Ea~~L~ 145 (448)
T PRK08573 72 IDAAKTGMLS-----NREIIEAVAKTVSKYGFPLVVDPVMIAKSGAPLLR-EDAVDALIKRLLPLATVVTPNRPEAEKLT 145 (448)
T ss_pred CCEEEECCcC-----CHHHHHHHHHHHHHcCCCEEEcCccccCCCCcCCC-HHHHHHHHHhhhccCEEEcCCHHHHHHHh
Confidence 4555555421 357888889999999999999997553 3442 22333344678899999999999999999
Q ss_pred CCCC--CCchHHHHHHhcC-CCCeEEEEecCC----Cce-EEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcC
Q 024908 140 GGDD--HNDDNVVLEKLFH-PNLKLLIVTEGS----KGC-RYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQ 211 (260)
Q Consensus 140 g~~~--~~~~~~~~~~l~~-~g~~~vivt~G~----~G~-~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~ 211 (260)
|.+. .++...+++.|.+ .|++.|+||.|. +|+ +++.++..+++++++++++|++||||+|+|+|+++|++|+
T Consensus 146 g~~i~~~~d~~~aa~~L~~~~G~~~VvVt~G~~~g~~~~~~~~~~~~~~~~~~~~v~~~dt~GAGDaFsAa~aa~l~~G~ 225 (448)
T PRK08573 146 GMKIRSVEDARKAAKYIVEELGAEAVVVKGGHLEGEEAVDVLYHNGTFREFRAPRVESGCTHGTGCSFSAAIAAGLAKGL 225 (448)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCEEEEecccCCCCceeEEEEECCeEEEEEecCcCCCCCCChHHHHHHHHHHHHHcCC
Confidence 9753 3344557778874 899999999885 344 4455666667777788899999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHHHhhHHhhh
Q 024908 212 NLIKDENRLREALLFANACGALTVTE 237 (260)
Q Consensus 212 ~~~~~~~~~~~a~~~a~~~Aa~~~~~ 237 (260)
+ +++|+++|+.+....+++
T Consensus 226 ~-------l~eAl~~A~~~~~~al~~ 244 (448)
T PRK08573 226 D-------PEEAIKTAKKFITMAIKY 244 (448)
T ss_pred C-------HHHHHHHHHHHHHHHHHH
Confidence 9 999999999999999883
No 61
>PRK12616 pyridoxal kinase; Reviewed
Probab=99.81 E-value=1.3e-18 Score=143.20 Aligned_cols=163 Identities=18% Similarity=0.109 Sum_probs=122.2
Q ss_pred CccEEEEccccCCCchhHHHHHHHHHHHHHCC-CeEEEcCCCCCCCC---CCHHHHHHHHHHHhhhCCEEecCHHHHhhh
Q 024908 63 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESG-SILSYDPNLRLPLW---PSEEAAREGIMSIWDQADIIKVSDDEITFL 138 (260)
Q Consensus 63 ~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~v~~d~~~~~~~~---~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l 138 (260)
..+.|.++.+ .+ .+.+..+.+.+++.+ .++++||.....-. -..+........+++.+|+++||..|++.|
T Consensus 74 ~~~aikiG~l--~s---~~~i~~i~~~l~~~~~~~vV~DPV~~~~~g~~~l~~~~~~~l~~~L~~~advitpN~~Ea~~L 148 (270)
T PRK12616 74 GVDAMKTGML--PT---VDIIELAADTIKEKQLKNVVIDPVMVCKGANEVLYPEHAEALREQLAPLATVITPNLFEAGQL 148 (270)
T ss_pred CCCEEEECCC--CC---HHHHHHHHHHHHhcCCCCEEEccceecCCCCcccCHHHHHHHHHHhhccceEecCCHHHHHHH
Confidence 4678888753 22 345556666666665 35999997533210 012223434445888999999999999999
Q ss_pred cCCC---CCCchHHHHHHhcCCCCeEEEEecCCCce------EEEecCceeeecCcccccccCCCCchHHHHHHHHHHHh
Q 024908 139 TGGD---DHNDDNVVLEKLFHPNLKLLIVTEGSKGC------RYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAA 209 (260)
Q Consensus 139 ~g~~---~~~~~~~~~~~l~~~g~~~vivt~G~~G~------~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~ 209 (260)
+|.. +.++...+++.+.+.|++.|+||.|.+|. +++.++..++++.++++..+++|+||+|+|+|+++|++
T Consensus 149 ~g~~~~~~~~~~~~aa~~l~~~G~~~VvVt~G~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~t~GaGD~fsaalaa~l~~ 228 (270)
T PRK12616 149 SGMGEIKTVEQMKEAAKKIHELGAQYVVITGGGKLKHEKAVDVLYDGETAEVLESEMIDTPYTHGAGCTFSAAVTAELAK 228 (270)
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCcCCceEEEEEECCeEEEEEeeeeCCCCCCcHHHHHHHHHHHHHHC
Confidence 9862 23344567788888999999999998752 55666665667777778889999999999999999999
Q ss_pred cCcccccHHHHHHHHHHHHHHhhHHhhh
Q 024908 210 DQNLIKDENRLREALLFANACGALTVTE 237 (260)
Q Consensus 210 g~~~~~~~~~~~~a~~~a~~~Aa~~~~~ 237 (260)
|++ +++|+++|..+....++.
T Consensus 229 g~~-------l~~Av~~A~~~~~~~i~~ 249 (270)
T PRK12616 229 GSE-------VKEAIYAAKEFITAAIKE 249 (270)
T ss_pred CCC-------HHHHHHHHHHHHHHHHHH
Confidence 999 999999999999888875
No 62
>PTZ00344 pyridoxal kinase; Provisional
Probab=99.75 E-value=7.1e-17 Score=134.62 Aligned_cols=163 Identities=17% Similarity=0.131 Sum_probs=116.6
Q ss_pred CccEEEEccccCCCchhHHHHHHHHHHHHHCC--CeEEEcCCC--CCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhh
Q 024908 63 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESG--SILSYDPNL--RLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFL 138 (260)
Q Consensus 63 ~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~--~~v~~d~~~--~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l 138 (260)
+.++|..|.+. +....+.+.++++.+++.+ +++++||.. +..+|. .+...+.+.++++++|+++||..|++.+
T Consensus 77 ~~~~v~sG~l~--~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~-~~~~~~~~~~ll~~~dii~pN~~E~~~L 153 (296)
T PTZ00344 77 DYTYVLTGYIN--SADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYV-KEEVVDAYRELIPYADVITPNQFEASLL 153 (296)
T ss_pred cCCEEEECCCC--CHHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEe-CHHHHHHHHHHhhhCCEEeCCHHHHHHH
Confidence 34666666542 3444555666666656554 578999743 445564 4566777778999999999999999999
Q ss_pred cCCCC--CCchHHHHHHhcCCCCeEEEEe---cCCCc----eEEEec------CceeeecCcccccccCCCCchHHHHHH
Q 024908 139 TGGDD--HNDDNVVLEKLFHPNLKLLIVT---EGSKG----CRYYTK------EFKGRVPGVKTKAVDTTGAGDSFVSGI 203 (260)
Q Consensus 139 ~g~~~--~~~~~~~~~~l~~~g~~~vivt---~G~~G----~~~~~~------~~~~~~~~~~~~~vdt~GaGDaf~Ag~ 203 (260)
+|.+. .++..++++.+.+.|++.|+|| .|.+| +++... +..+.++.++++ ++++|+||+|+|+|
T Consensus 154 ~g~~~~~~~~~~~~~~~l~~~g~~~VvVTg~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~GaGD~f~A~~ 232 (296)
T PTZ00344 154 SGVEVKDLSDALEAIDWFHEQGIPVVVITSFREDEDPTHLRFLLSCRDKDTKNNKRFTGKVPYIE-GRYTGTGDLFAALL 232 (296)
T ss_pred hCCCCCCHHHHHHHHHHHHHhCCCEEEEEeecCCCCCCcEEEEEEeccccCCCceeEEEeccccC-CCCCCchHHHHHHH
Confidence 99753 2344457788888899999999 55555 444321 223445545554 57799999999999
Q ss_pred HHHHHhcCcccccHHHHHHHHHHHHHHhhHHhhh
Q 024908 204 LNCLAADQNLIKDENRLREALLFANACGALTVTE 237 (260)
Q Consensus 204 ~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~~~~ 237 (260)
++.+.+| + +++|+++|.+.....++.
T Consensus 233 ~a~l~~g-~-------~~~a~~~A~a~~~~~i~~ 258 (296)
T PTZ00344 233 LAFSHQH-P-------MDLAVGKAMGVLQDIIKA 258 (296)
T ss_pred HHHHhcC-C-------HHHHHHHHHHHHHHHHHH
Confidence 9888888 8 999999998888777765
No 63
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=99.73 E-value=1.9e-16 Score=141.05 Aligned_cols=164 Identities=17% Similarity=0.136 Sum_probs=123.6
Q ss_pred CccEEEEccccCCCchhHHHHHHHHHHHHHCCCe-EEEcCCCCC---CCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhh
Q 024908 63 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSI-LSYDPNLRL---PLWPSEEAAREGIMSIWDQADIIKVSDDEITFL 138 (260)
Q Consensus 63 ~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-v~~d~~~~~---~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l 138 (260)
+.+.+.++.+. + .+.+..+++.+++.+.+ +++||.... ..+............+++++|+++||..|++.|
T Consensus 78 ~~~aik~G~l~--~---~~~i~~i~~~l~~~~~~~vVlDPV~~~~~G~~l~~~~~~~~l~~~Ll~~adiitPN~~Ea~~L 152 (502)
T PLN02898 78 PVDVVKTGMLP--S---AEIVKVLCQALKEFPVKALVVDPVMVSTSGDVLAGPSILSALREELLPLATIVTPNVKEASAL 152 (502)
T ss_pred CCCEEEECCcC--C---HHHHHHHHHHHHhCCCCCEEEccccccCCCCccCCHHHHHHHHHhhhccCeEEcCCHHHHHHH
Confidence 46777777542 2 45677777777777774 999994321 112222233333346889999999999999999
Q ss_pred cCCC---CCCchHHHHHHhcCCCCeEEEEecCCCc------eEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHh
Q 024908 139 TGGD---DHNDDNVVLEKLFHPNLKLLIVTEGSKG------CRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAA 209 (260)
Q Consensus 139 ~g~~---~~~~~~~~~~~l~~~g~~~vivt~G~~G------~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~ 209 (260)
+|.. +.++...+++.|.+.|++.|+||.|..+ .++++++..++++.++++.+|++|+||+|+|+|++++++
T Consensus 153 ~g~~~~~~~~~~~~~a~~l~~~G~~~VvItgg~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~t~GaGD~fsaaiaa~l~~ 232 (502)
T PLN02898 153 LGGDPLETVADMRSAAKELHKLGPRYVLVKGGHLPDSLDAVDVLYDGTEFHELRSSRIKTRNTHGTGCTLASCIAAELAK 232 (502)
T ss_pred hCCCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCcceEEEEcCCeEEEEecceeCCCCCCchhhhHHHHHHHHHHc
Confidence 9853 2234556778888899999999998753 355665556677777778899999999999999999999
Q ss_pred cCcccccHHHHHHHHHHHHHHhhHHhhhc
Q 024908 210 DQNLIKDENRLREALLFANACGALTVTER 238 (260)
Q Consensus 210 g~~~~~~~~~~~~a~~~a~~~Aa~~~~~~ 238 (260)
|++ +++|+++|..+....+.+.
T Consensus 233 G~~-------l~eAv~~A~~~v~~ai~~~ 254 (502)
T PLN02898 233 GSD-------MLSAVKVAKRYVETALEYS 254 (502)
T ss_pred CCC-------HHHHHHHHHHHHHHHHHhh
Confidence 999 9999999999999998864
No 64
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=99.71 E-value=3.2e-16 Score=139.76 Aligned_cols=160 Identities=16% Similarity=0.137 Sum_probs=115.1
Q ss_pred ccEEEEccccCCCchhHHHHHHHHHHHHHCCCeEEEcCCCCC----CCCCCH--HHHHHHH-HHHhhhCCEEecCHHHHh
Q 024908 64 GSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRL----PLWPSE--EAAREGI-MSIWDQADIIKVSDDEIT 136 (260)
Q Consensus 64 ~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~----~~~~~~--~~~~~~~-~~~l~~~dvl~~n~~E~~ 136 (260)
.+.|.+|.+ .+ .+.+..+.+.++ +.++++||.... .++... ......+ ..+++.+|+++||..|++
T Consensus 300 ~~~Ik~G~l--~s---~e~i~~i~~~l~--~~~vV~DPV~~~~~G~~l~~~~~~~~~~~~~~~~Ll~~advitPN~~Ea~ 372 (504)
T PTZ00347 300 ISVVKLGLV--PT---ARQLEIVIEKLK--NLPMVVDPVLVATSGDDLVAQKNADDVLAMYKERIFPMATIITPNIPEAE 372 (504)
T ss_pred CCEEEECCc--CC---HHHHHHHHHHhc--CCCEEEcccceeCCCCcccchhHHHHHHHHHHHhccCcceEEeCCHHHHH
Confidence 445555542 22 345555655554 568999996532 223211 1112223 367899999999999999
Q ss_pred hhcCCC---CCCchHHHHHHhcCCCCeEEEEecCCCc-------eEEEec--CceeeecCcccccccCCCCchHHHHHHH
Q 024908 137 FLTGGD---DHNDDNVVLEKLFHPNLKLLIVTEGSKG-------CRYYTK--EFKGRVPGVKTKAVDTTGAGDSFVSGIL 204 (260)
Q Consensus 137 ~l~g~~---~~~~~~~~~~~l~~~g~~~vivt~G~~G-------~~~~~~--~~~~~~~~~~~~~vdt~GaGDaf~Ag~~ 204 (260)
.|+|.. +.++...+++.+.+.|++.|+||.|..| ..++.+ +..++++.++++++|++|+||+|+|+|+
T Consensus 373 ~L~g~~~~~~~~~~~~aa~~l~~~G~~~VvVtgg~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~GaGD~fsaaia 452 (504)
T PTZ00347 373 RILGRKEITGVYEARAAAQALAQYGSRYVLVKGGHDLIDPEACRDVLYDREKDRFYEFTANRIATINTHGTGCTLASAIS 452 (504)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCcCCCcceEEEEcCCCCeEEEEEeeeECCCCCCChHHHHHHHHH
Confidence 999964 2234445778888899999999999863 344442 3456777777888999999999999999
Q ss_pred HHHHhcCcccccHHHHHHHHHHHHHHhhHHhhh
Q 024908 205 NCLAADQNLIKDENRLREALLFANACGALTVTE 237 (260)
Q Consensus 205 ~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~~~~ 237 (260)
+++++|++ +++|+++|.++-...+..
T Consensus 453 a~la~G~~-------l~eAv~~A~~~v~~~i~~ 478 (504)
T PTZ00347 453 SFLARGYT-------VPDAVERAIGYVHEAIVR 478 (504)
T ss_pred HHHhCCCC-------HHHHHHHHHHHHHHHHHh
Confidence 99999999 999999998887777765
No 65
>PLN02978 pyridoxal kinase
Probab=99.68 E-value=7.8e-15 Score=122.78 Aligned_cols=163 Identities=17% Similarity=0.063 Sum_probs=117.1
Q ss_pred ccEEEEccccCCCchhHHHHHHHHHHHHH--CCCeEEEcCCCCC--CCCCCHHHHHHHH-HHHhhhCCEEecCHHHHhhh
Q 024908 64 GSIFHYGSISLIAEPCRSTQLAAMNLAKE--SGSILSYDPNLRL--PLWPSEEAAREGI-MSIWDQADIIKVSDDEITFL 138 (260)
Q Consensus 64 ~d~v~~~~~~~~~~~~~~~~~~~~~~a~~--~~~~v~~d~~~~~--~~~~~~~~~~~~~-~~~l~~~dvl~~n~~E~~~l 138 (260)
+|.+.++. +.+....+.+.++++.+++ .++++++||.... .+|... .....+ ..+++++|+++||..|++.|
T Consensus 87 ~~ai~~G~--l~s~~~~~~v~~~l~~~~~~~~~~~vvlDPvm~d~G~l~~~~-~~~~~~~~~ll~~adiitPN~~Ea~~L 163 (308)
T PLN02978 87 YTHLLTGY--IGSVSFLRTVLRVVKKLRSVNPNLTYVCDPVLGDEGKLYVPP-ELVPVYREKVVPLATMLTPNQFEAEQL 163 (308)
T ss_pred cCEEEecc--cCCHHHHHHHHHHHHHHHHhCCCCeEEECCcccCCCCccCCh-hHHHHHHHHHHhhCCeeccCHHHHHHH
Confidence 67776663 4455667888888888876 4567899997654 345333 344445 45999999999999999999
Q ss_pred cCCCCC--CchHHHHHHhcCCCCeEEEEecCC-CceEE-Ee--------cCceeeecCcccccccCCCCchHHHHHHHHH
Q 024908 139 TGGDDH--NDDNVVLEKLFHPNLKLLIVTEGS-KGCRY-YT--------KEFKGRVPGVKTKAVDTTGAGDSFVSGILNC 206 (260)
Q Consensus 139 ~g~~~~--~~~~~~~~~l~~~g~~~vivt~G~-~G~~~-~~--------~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~ 206 (260)
+|.+.. ++...+++.+.+.|++.||||.+. +|... .. .+..++++.++.+.. ++|+||+|+|.+++.
T Consensus 164 ~g~~~~~~~~~~~a~~~l~~~g~~~VVITs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~GtGD~fsA~laa~ 242 (308)
T PLN02978 164 TGIRIVTEEDAREACAILHAAGPSKVVITSIDIDGKLLLVGSHRKEKGARPEQFKIVIPKIPAY-FTGTGDLMAALLLGW 242 (308)
T ss_pred hCCCCCCHHHHHHHHHHHHHhCCCEEEEEEecCCCCEEEEEecccccCCCCceEEEEccCCCCC-CCCchHHHHHHHHHH
Confidence 997532 234457788888999999998744 33332 21 124455665555544 589999999988888
Q ss_pred HHhc-CcccccHHHHHHHHHHHHHHhhHHhhh
Q 024908 207 LAAD-QNLIKDENRLREALLFANACGALTVTE 237 (260)
Q Consensus 207 l~~g-~~~~~~~~~~~~a~~~a~~~Aa~~~~~ 237 (260)
+.+| .+ +++|++.|...-...++.
T Consensus 243 l~~g~~~-------l~~A~~~A~~~v~~~i~~ 267 (308)
T PLN02978 243 SHKYPDN-------LDKAAELAVSSLQAVLRR 267 (308)
T ss_pred HhcCCcC-------HHHHHHHHHHHHHHHHHH
Confidence 8887 78 999999998887776665
No 66
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=99.66 E-value=2.3e-15 Score=134.84 Aligned_cols=160 Identities=19% Similarity=0.186 Sum_probs=113.1
Q ss_pred CccEEEEccccCCCchhHHHHHHHHHHHHHCCCeEEEcCCCCC----CCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhh
Q 024908 63 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRL----PLWPSEEAAREGIMSIWDQADIIKVSDDEITFL 138 (260)
Q Consensus 63 ~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~----~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l 138 (260)
..+.|.++. +.+....+.+.++++..+ +.++++||..+. .++ .+...+.+.++++++|+++||..|++.|
T Consensus 98 ~~~aikiG~--l~s~~~i~~v~~~l~~~~--~~~vVlDPv~~~~~G~~l~--~~~~~~~~~~Ll~~advItPN~~Ea~~L 171 (530)
T PRK14713 98 TVDAVKIGM--LGDAEVIDAVRTWLAEHR--PPVVVLDPVMVATSGDRLL--EEDAEAALRELVPRADLITPNLPELAVL 171 (530)
T ss_pred CCCEEEECC--cCCHHHHHHHHHHHHhCC--CCCEEECCcccCCCCCCCC--CHHHHHHHHHHhhhhheecCChHHHHHH
Confidence 457777764 334334455555554432 335899997643 233 2334556667999999999999999999
Q ss_pred cCCCC---CCchHHHHHHhcCCCCeEEEEecCCCc-----eEEEe-cCceeeecCcccccccCCCCchHHHHHHHHHHHh
Q 024908 139 TGGDD---HNDDNVVLEKLFHPNLKLLIVTEGSKG-----CRYYT-KEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAA 209 (260)
Q Consensus 139 ~g~~~---~~~~~~~~~~l~~~g~~~vivt~G~~G-----~~~~~-~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~ 209 (260)
+|.+. .++...+++++.+.+.+.||||.|..+ ..++. ++..++++.++++.+|++|+||+|+|+|+++|++
T Consensus 172 tg~~~~~~~~d~~~aa~~L~~~~g~~VvItgG~~~~~~~~d~~~~~~~~~~~~~~~~v~~~~t~GaGD~fsaalaa~La~ 251 (530)
T PRK14713 172 LGEPPATTWEEALAQARRLAAETGTTVLVKGGHLDGQRAPDALVGPDGAVTEVPGPRVDTRNTHGTGCSLSSALATRLGR 251 (530)
T ss_pred hCCCCCCCHHHHHHHHHHHHHhcCCEEEEeCCCCCCCcceEEEEcCCCeEEEEeeeeeCCCCCCcHHHHHHHHHHHHHHC
Confidence 99652 234445667787655568999988632 23443 3446677777788899999999999999999999
Q ss_pred cCcccccHHHHHHHHHHHHHHhhHHh
Q 024908 210 DQNLIKDENRLREALLFANACGALTV 235 (260)
Q Consensus 210 g~~~~~~~~~~~~a~~~a~~~Aa~~~ 235 (260)
|++ +++|+++|...-...+
T Consensus 252 G~~-------l~eAv~~A~~~v~~~i 270 (530)
T PRK14713 252 GGD-------WAAALRWATAWLHGAI 270 (530)
T ss_pred CCC-------HHHHHHHHHHHHHHHH
Confidence 999 9999999988433333
No 67
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=99.66 E-value=2.7e-15 Score=121.83 Aligned_cols=163 Identities=19% Similarity=0.148 Sum_probs=111.9
Q ss_pred CccEEEEccccCCCchhHHHHHHHHHHHHHCCCeEEEcCCCC---CCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhc
Q 024908 63 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLR---LPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLT 139 (260)
Q Consensus 63 ~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~---~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~ 139 (260)
.+|.|.+|. +.+....+.+ .+..+..+.++++||... .......+........+++.+|+++||..|++.|+
T Consensus 60 ~~~aikiG~--l~~~~~v~~i---~~~l~~~~~~vV~DPVm~~~~g~~~~~~~~~~~~~~~Llp~AdiitPN~~Ea~~L~ 134 (246)
T PF08543_consen 60 KFDAIKIGY--LGSAEQVEII---ADFLKKPKIPVVLDPVMGDSGGYYYVDPDVVEAMREELLPLADIITPNLTEAELLT 134 (246)
T ss_dssp C-SEEEE-S---SSHHHHHHH---HHHHHHTTTEEEEE---EETTTECTSSHHHHHHHHHHCGGG-SEEE-BHHHHHHHH
T ss_pred cccEEEEcc--cCCchhhhhH---HHHHhccCCCEEEecccccCCCCcCCCHHHHHHHHhccCCcCeEEeCCHHHHHHHh
Confidence 678888875 3343333444 444455677999999332 12222344445555559999999999999999999
Q ss_pred CCCC--CCchHHHHHHhcCCCCeEEEEecCCC----c---eEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhc
Q 024908 140 GGDD--HNDDNVVLEKLFHPNLKLLIVTEGSK----G---CRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAAD 210 (260)
Q Consensus 140 g~~~--~~~~~~~~~~l~~~g~~~vivt~G~~----G---~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g 210 (260)
|.+. .++...+++.|++.|++.|+||.+.. + .+++.++..+.++.+..+..+.+|+||.|+|.+++.|++|
T Consensus 135 g~~i~~~~~~~~~~~~l~~~G~~~VvItg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~GTGd~fss~laa~l~~g 214 (246)
T PF08543_consen 135 GREINSEEDIEEAAKALLALGPKNVVITGGHLDGDEGIITDVLYDGGEFYWLSSPRIPTGSFHGTGDLFSSALAAFLAKG 214 (246)
T ss_dssp TS--SSHHHHHHHHHHHHHTS-SEEEEEEEEGGSSCEEEEEEEETTSEEEEEEEEEECTSGCTTHHHHHHHHHHHHHHTT
T ss_pred CCCCCChHhHHHHHHHHHHhCCceEEEeeeccccccccccceeeeccceeecceeEEcCCCCCCchhHHHHHHHHHHHcC
Confidence 9653 34455688999999999999998752 2 3344555666665555555789999999999999999999
Q ss_pred CcccccHHHHHHHHHHHHHHhhHHhhh
Q 024908 211 QNLIKDENRLREALLFANACGALTVTE 237 (260)
Q Consensus 211 ~~~~~~~~~~~~a~~~a~~~Aa~~~~~ 237 (260)
++ +++|++.|...-...++.
T Consensus 215 ~~-------l~~Av~~A~~~v~~~i~~ 234 (246)
T PF08543_consen 215 YS-------LEEAVEKAKNFVRRAIKN 234 (246)
T ss_dssp SS-------HHHHHHHHHHHHHHHHHH
T ss_pred CC-------HHHHHHHHHHHHHHHHHH
Confidence 99 999999999888777763
No 68
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=99.65 E-value=7.1e-15 Score=117.30 Aligned_cols=162 Identities=17% Similarity=0.107 Sum_probs=123.9
Q ss_pred CccEEEEccccCCCchhHHHHHHHHHHHHHCC-CeEEEcCCCCCC---CCCCHHHHHHHHHHHhhhCCEEecCHHHHhhh
Q 024908 63 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESG-SILSYDPNLRLP---LWPSEEAAREGIMSIWDQADIIKVSDDEITFL 138 (260)
Q Consensus 63 ~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~v~~d~~~~~~---~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l 138 (260)
.++.+-++.+ . +.+++..+.+..++++ .++++||..... -.-..+......+.++|.+++++||..|++.|
T Consensus 72 ~v~avKtGML--~---~~eiie~va~~l~~~~~~~vV~DPVmvaksG~~Ll~~~a~~~l~~~LlP~a~vvTPNl~EA~~L 146 (263)
T COG0351 72 PVDAVKTGML--G---SAEIIEVVAEKLKKYGIGPVVLDPVMVAKSGDPLLDEEAVEALREELLPLATVVTPNLPEAEAL 146 (263)
T ss_pred CCCEEEECCc--C---CHHHHHHHHHHHHhcCCCcEEECceEEEcCCCcccChHHHHHHHHHhhccCeEecCCHHHHHHH
Confidence 4567777753 2 2457777777788887 679999922111 01123444555568999999999999999999
Q ss_pred cCC-C--CCCchHHHHHHhcCCCCeEEEEecCCCc----eEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcC
Q 024908 139 TGG-D--DHNDDNVVLEKLFHPNLKLLIVTEGSKG----CRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQ 211 (260)
Q Consensus 139 ~g~-~--~~~~~~~~~~~l~~~g~~~vivt~G~~G----~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~ 211 (260)
+|. . +.+++.++++.+.+.|+++|+|+-|... -+++.++..+.++.+.++--+|+|+|++|.|++.+.|++|.
T Consensus 147 ~g~~~i~~~~d~~~a~~~i~~~g~~~VliKGGH~~~~~~D~l~~~~~~~~f~~~ri~t~~tHGTGCTlSaAIaa~LA~G~ 226 (263)
T COG0351 147 SGLPKIKTEEDMKEAAKLLHELGAKAVLIKGGHLEGEAVDVLYDGGSFYTFEAPRIPTKNTHGTGCTLSAAIAANLAKGL 226 (263)
T ss_pred cCCCccCCHHHHHHHHHHHHHhCCCEEEEcCCCCCCCceeEEEcCCceEEEeccccCCCCCCCccHHHHHHHHHHHHcCC
Confidence 995 3 4445566767777899999999987533 35566666777778888888999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHHHhhHHhh
Q 024908 212 NLIKDENRLREALLFANACGALTVT 236 (260)
Q Consensus 212 ~~~~~~~~~~~a~~~a~~~Aa~~~~ 236 (260)
+ +++|++.|-..-...++
T Consensus 227 ~-------l~~AV~~Ak~fv~~AI~ 244 (263)
T COG0351 227 S-------LEEAVKKAKEFVTRAIR 244 (263)
T ss_pred C-------HHHHHHHHHHHHHHHHh
Confidence 9 99999999988888887
No 69
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=99.64 E-value=6.5e-15 Score=136.60 Aligned_cols=161 Identities=14% Similarity=0.162 Sum_probs=119.3
Q ss_pred CccEEEEccccCCCchhHHHHHHHHHHHHHC-CCeEEEcCCCCC----CCCCCHHHHHHHHHHHhhhCCEEecCHHHHhh
Q 024908 63 QGSIFHYGSISLIAEPCRSTQLAAMNLAKES-GSILSYDPNLRL----PLWPSEEAAREGIMSIWDQADIIKVSDDEITF 137 (260)
Q Consensus 63 ~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~v~~d~~~~~----~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~ 137 (260)
+.+.|.+|.+ .+ .+.+..+.+.+++. +.++++||.... .++ + ......+.++++.+|+++||..|+..
T Consensus 310 ~~~aiKiGmL--~s---~e~v~~i~~~l~~~~~~~vVlDPV~~~~sG~~l~-~-~~~~~~l~~Llp~adlItPN~~Ea~~ 382 (755)
T PRK09517 310 TVDAVKLGML--GS---ADTVDLVASWLGSHEHGPVVLDPVMVATSGDRLL-D-ADATEALRRLAVHVDVVTPNIPELAV 382 (755)
T ss_pred CCCEEEECCC--CC---HHHHHHHHHHHHhCCCCCEEEecccccCCCCCCC-C-HHHHHHHHHHhCcccCccCCHHHHHH
Confidence 4577877753 22 35566666666664 467999996432 222 1 22334456789999999999999999
Q ss_pred hcCCC---CCCchHHHHHHhcCCCCeEEEEecCC------CceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHH
Q 024908 138 LTGGD---DHNDDNVVLEKLFHPNLKLLIVTEGS------KGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLA 208 (260)
Q Consensus 138 l~g~~---~~~~~~~~~~~l~~~g~~~vivt~G~------~G~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~ 208 (260)
|+|.. +.++...+++.+.+.+...||||.|. .++++..++..++++.++++.+|++|+||+|+|+|+++|+
T Consensus 383 L~g~~~~~~~~d~~~aa~~L~~~~g~~VVVkgGh~~~~~~~~~l~~~~~~~~~~~~~~v~~~~t~GaGDtfsaaiaa~La 462 (755)
T PRK09517 383 LCGEAPAITMDEAIAQARGFARTHGTIVIVKGGHLTGDLADNAVVRPDGSVHQVENPRVNTTNSHGTGCSLSAALATLIA 462 (755)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHhcCCEEEEcCCcCCCCccceEEEeCCCeEEEEeecccCCCCCcChHHHHHHHHHHHHH
Confidence 99953 33344556778876544589999883 4666655555667788888899999999999999999999
Q ss_pred hcCcccccHHHHHHHHHHHHHHhhHHhhh
Q 024908 209 ADQNLIKDENRLREALLFANACGALTVTE 237 (260)
Q Consensus 209 ~g~~~~~~~~~~~~a~~~a~~~Aa~~~~~ 237 (260)
+|++ +++|+++|..+-...+.+
T Consensus 463 ~G~s-------l~eAv~~A~~~v~~~i~~ 484 (755)
T PRK09517 463 AGES-------VEKALEWATRWLNEALRH 484 (755)
T ss_pred CCCC-------HHHHHHHHHHHHHHHHHh
Confidence 9999 999999999988888765
No 70
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=99.62 E-value=1.5e-14 Score=118.32 Aligned_cols=159 Identities=15% Similarity=0.029 Sum_probs=114.5
Q ss_pred hhhcCccEEEEccccCCCchhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHH--HHhhhCCEEecCHHHHh
Q 024908 59 NLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIM--SIWDQADIIKVSDDEIT 136 (260)
Q Consensus 59 ~~~~~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~--~~l~~~dvl~~n~~E~~ 136 (260)
..+.+.|+++++.- +... +.+..+++.+++.+.++++|+... ....... .+.+.+++++||..|++
T Consensus 73 ~~~~~~d~v~ig~g-l~~~---~~~~~i~~~~~~~~~pvVlDa~~~--------~~~~~~~~~~~~~~~~iltPn~~E~~ 140 (254)
T cd01171 73 ELLERADAVVIGPG-LGRD---EEAAEILEKALAKDKPLVLDADAL--------NLLADEPSLIKRYGPVVLTPHPGEFA 140 (254)
T ss_pred hhhccCCEEEEecC-CCCC---HHHHHHHHHHHhcCCCEEEEcHHH--------HHhhcChhhhccCCCEEECCCHHHHH
Confidence 34568899888752 2221 567778888888899999998521 1111000 13567899999999999
Q ss_pred hhcCCCCCC---chHHHHHHhcCCCCeEEEEecCCCceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCcc
Q 024908 137 FLTGGDDHN---DDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNL 213 (260)
Q Consensus 137 ~l~g~~~~~---~~~~~~~~l~~~g~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~~~ 213 (260)
.|+|....+ +...+++.+.+++. .+||..|. +.++++++..++++....+..+++|+||+|+|.+.+.+++|++
T Consensus 141 ~L~g~~~~~~~~~~~~~a~~l~~~~~-~~vvlkG~-~~~i~~~~~~~~~~~~~~~~~~~~GaGD~lag~iaa~la~g~~- 217 (254)
T cd01171 141 RLLGALVEEIQADRLAAAREAAAKLG-ATVVLKGA-VTVIADPDGRVYVNPTGNPGLATGGSGDVLAGIIAALLAQGLS- 217 (254)
T ss_pred HHhCCChhhhhhHHHHHHHHHHHHcC-cEEEEcCC-CCEEECCCCcEEEECCCCcccccCchHHHHHHHHHHHHHcCCC-
Confidence 999975322 23346677777664 45556674 6666766555666666778899999999998888888889999
Q ss_pred cccHHHHHHHHHHHHHHhhHHhhhc
Q 024908 214 IKDENRLREALLFANACGALTVTER 238 (260)
Q Consensus 214 ~~~~~~~~~a~~~a~~~Aa~~~~~~ 238 (260)
+.+|+++|+.+.+.+.+..
T Consensus 218 ------~~eA~~~A~~~~~~a~~~~ 236 (254)
T cd01171 218 ------PLEAAALAVYLHGLAGDLA 236 (254)
T ss_pred ------HHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888753
No 71
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=99.61 E-value=4.6e-14 Score=114.04 Aligned_cols=165 Identities=18% Similarity=0.086 Sum_probs=117.3
Q ss_pred hhhhcCccEEEEccccCCCchhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhh--CCEEecCHHHH
Q 024908 58 KNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQ--ADIIKVSDDEI 135 (260)
Q Consensus 58 ~~~~~~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~--~dvl~~n~~E~ 135 (260)
...++++|+++++.- +..+...+.+...++.+++.+.++++||..... +... .+.+.+++.. +|+++||..|+
T Consensus 44 ~~~l~~~d~vvi~~G-~l~~~~~~~i~~~~~~~~~~~~pvVlDp~~~~~---~~~~-~~~~~~ll~~~~~~ilTPN~~Ea 118 (242)
T cd01170 44 EELAKIAGALVINIG-TLTSEQIEAMLKAGKAANQLGKPVVLDPVGVGA---TSFR-TEVAKELLAEGQPTVIRGNASEI 118 (242)
T ss_pred HHHHHHcCcEEEeCC-CCChHHHHHHHHHHHHHHhcCCCEEEcccccCc---chhH-HHHHHHHHhcCCCeEEcCCHHHH
Confidence 356788898887532 223344566677777788889999999964322 1211 1234455555 99999999999
Q ss_pred hhhcCCCC-----------CCchHHHHHHhcCCCCeEEEEecCCCceEEEecCceeeecCcccccccCCCCchHHHHHHH
Q 024908 136 TFLTGGDD-----------HNDDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGIL 204 (260)
Q Consensus 136 ~~l~g~~~-----------~~~~~~~~~~l~~~g~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~ 204 (260)
..|+|... .++...+++++.+.+...|++| |.... +++++..++++.......+++|+||+|+|.+.
T Consensus 119 ~~L~g~~~~~~~~~~~~~~~~~~~~aa~~l~~~~~~~Vllk-G~~d~-l~~~~~~~~~~~~~~~~~~v~GtGdtLa~aiA 196 (242)
T cd01170 119 AALAGLTGLGKGVDSSSSDEEDALELAKALARKYGAVVVVT-GEVDY-ITDGERVVVVKNGHPLLTKITGTGCLLGAVIA 196 (242)
T ss_pred HHHhCCCCCcCcccCCCcchHHHHHHHHHHHHHhCCEEEEE-CCCcE-EEECCEEEEEeCCCccccCCCchHHHHHHHHH
Confidence 99998653 2234556777877666679999 66554 55666667776544445667999999999999
Q ss_pred HHHHhcCcccccHHHHHHHHHHHHHHhhHHhh
Q 024908 205 NCLAADQNLIKDENRLREALLFANACGALTVT 236 (260)
Q Consensus 205 ~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~~~ 236 (260)
+.|++|.+ +.+|+..|...-+....
T Consensus 197 a~LA~g~~-------~~~A~~~A~~~~~~a~~ 221 (242)
T cd01170 197 AFLAVGDD-------PLEAAVSAVLVYGIAGE 221 (242)
T ss_pred HHHhCCCC-------HHHHHHHHHHHHHHHHH
Confidence 99999999 99999999776666654
No 72
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=99.57 E-value=1.8e-13 Score=109.92 Aligned_cols=167 Identities=22% Similarity=0.153 Sum_probs=123.9
Q ss_pred hhhcCccEEEEccccCCCchhHHHHHHHHHHHHHCC--CeEEEcC--CCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHH
Q 024908 59 NLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESG--SILSYDP--NLRLPLWPSEEAAREGIMSIWDQADIIKVSDDE 134 (260)
Q Consensus 59 ~~~~~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~--~~v~~d~--~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E 134 (260)
..+.++|.|..|. +........+..++++.++.+ ..+++|| +....++...+.......++++.+|+++||.-|
T Consensus 69 ~~~~~~davltGY--lgs~~qv~~i~~~v~~vk~~~P~~~~l~DPVMGD~gglYV~~~~~~~~~~~lip~AdiiTPN~fE 146 (281)
T COG2240 69 DKLGECDAVLTGY--LGSAEQVRAIAGIVKAVKEANPNALYLCDPVMGDPGGLYVAPEVAEAYRDELLPLADIITPNIFE 146 (281)
T ss_pred ccccccCEEEEcc--CCCHHHHHHHHHHHHHHhccCCCeEEEeCCcccCCCceeeccchHHHHHHhhcchhhEeCCCHHH
Confidence 3667888886663 556667788888888888774 4588998 333355544444455555799999999999999
Q ss_pred HhhhcCCC--CCCchHHHHHHhcCCCCeEEEEecCCC-----ceEEEecC---ceeeecCcccccccCCCCchHHHHHHH
Q 024908 135 ITFLTGGD--DHNDDNVVLEKLFHPNLKLLIVTEGSK-----GCRYYTKE---FKGRVPGVKTKAVDTTGAGDSFVSGIL 204 (260)
Q Consensus 135 ~~~l~g~~--~~~~~~~~~~~l~~~g~~~vivt~G~~-----G~~~~~~~---~~~~~~~~~~~~vdt~GaGDaf~Ag~~ 204 (260)
++.|+|.. +.++..++++.|.+.|++.|+||.=.. |.+++... ...|+. +.+ ..+.+|.||.|+|-|+
T Consensus 147 Le~Ltg~~~~~~~da~~aa~~L~~~gp~~vlVTS~~~~~~~~~~~~~~~~~~~~~~h~~-~~v-~~~~~GtGDL~salll 224 (281)
T COG2240 147 LEILTGKPLNTLDDAVKAARKLGADGPKIVLVTSLSRAGMSTGNFEMLGKSAELAWHIS-PLV-PFIPNGTGDLFSALLL 224 (281)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHhhcCCCEEEEecccccCCCCceEEEeccchhhhhhhh-hcC-CCCCCCchHHHHHHHH
Confidence 99999986 444556688888899999999996332 44444433 333332 222 2349999999999999
Q ss_pred HHHHhcCcccccHHHHHHHHHHHHHHhhHHhh
Q 024908 205 NCLAADQNLIKDENRLREALLFANACGALTVT 236 (260)
Q Consensus 205 ~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~~~ 236 (260)
+++++|.+ ..+++..+..+-...++
T Consensus 225 a~lL~g~~-------~~~al~~~~~~V~evl~ 249 (281)
T COG2240 225 ARLLEGLS-------LTQALERATAAVYEVLQ 249 (281)
T ss_pred HHHHcCCC-------HHHHHHHHHHHHHHHHH
Confidence 99999999 99999999888777666
No 73
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=99.54 E-value=3.9e-13 Score=110.94 Aligned_cols=176 Identities=15% Similarity=0.067 Sum_probs=119.6
Q ss_pred hhhcCccEEEEccccCCCchhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhh
Q 024908 59 NLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFL 138 (260)
Q Consensus 59 ~~~~~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l 138 (260)
..++.+|++++++- +..+. .+..+++.+++.+.++++|+. ...+..........+++++||..|++.|
T Consensus 88 ~~~~~~davvig~G-l~~~~---~~~~l~~~~~~~~~pvVlDa~--------g~~l~~~~~~~~~~~~vItPN~~El~~L 155 (272)
T TIGR00196 88 ELLERYDVVVIGPG-LGQDP---SFKKAVEEVLELDKPVVLDAD--------ALNLLTYDKPKREGEVILTPHPGEFKRL 155 (272)
T ss_pred hhhccCCEEEEcCC-CCCCH---HHHHHHHHHHhcCCCEEEEhH--------HHHHHhhcccccCCCEEECCCHHHHHHH
Confidence 34578899988752 32322 266678888888999999984 2222221111133689999999999999
Q ss_pred cCCCC--CCchHHHHHHhcCCCCeEEEEecCCCceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCccccc
Q 024908 139 TGGDD--HNDDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKD 216 (260)
Q Consensus 139 ~g~~~--~~~~~~~~~~l~~~g~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~ 216 (260)
+|... .++..++++++.+.. +.+|++.|.++.++..++..+.. +...+..+++|+||+++|.+.+.+++|.+
T Consensus 156 ~g~~~~~~~~~~~aa~~l~~~~-~~vVv~kG~~~~i~~~~~~~~~~-~~~~~~~~~~GaGD~lag~iaa~la~g~~---- 229 (272)
T TIGR00196 156 LGLVNEIQGDRLEAAQDIAQKL-QAVVVLKGAADVIAAPDGDLWIN-KTGNAALAKGGTGDVLAGLIGGLLAQNLD---- 229 (272)
T ss_pred hCCchhhhhhHHHHHHHHHHHh-CCEEEEcCCCCEEEcCCCeEEEE-CCCCCccCCCCchHHHHHHHHHHHhCCCC----
Confidence 99653 234455677777653 45788889999866644444443 44456788999999966666666778999
Q ss_pred HHHHHHHHHHH---HHHhhHHhhhc-CCCCCCCCHHHHHHHHhhc
Q 024908 217 ENRLREALLFA---NACGALTVTER-GAIPALPTKEAALKLLHTV 257 (260)
Q Consensus 217 ~~~~~~a~~~a---~~~Aa~~~~~~-g~~~~~~~~~~l~~~~~~~ 257 (260)
+.+|+..| +..|+..+.+. |+. + .+..+|.+.+.+.
T Consensus 230 ---~~~A~~~a~~~~~~a~~~~~~~~g~~-~-~~~~dl~~~i~~~ 269 (272)
T TIGR00196 230 ---PFDAACNAAFAHGLAGDLALKNHGAY-G-LTALDLIEKIPRV 269 (272)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhcCCC-C-cCHHHHHHHHHHH
Confidence 99999777 78888776554 543 2 5778888776543
No 74
>PTZ00493 phosphomethylpyrimidine kinase; Provisional
Probab=99.45 E-value=5.6e-12 Score=104.77 Aligned_cols=166 Identities=12% Similarity=0.078 Sum_probs=108.0
Q ss_pred CccEEEEccccCCCchhHHHHHHHHHHHHH-C--CCeEEEcCCCCCC---CCCC-HHHHHHHHHHHhhhCCEEecCHHHH
Q 024908 63 QGSIFHYGSISLIAEPCRSTQLAAMNLAKE-S--GSILSYDPNLRLP---LWPS-EEAAREGIMSIWDQADIIKVSDDEI 135 (260)
Q Consensus 63 ~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~-~--~~~v~~d~~~~~~---~~~~-~~~~~~~~~~~l~~~dvl~~n~~E~ 135 (260)
..+.|-++.+ .+....+.+.+.++...+ + +.++++||..... .+.. .+......+.+++++++++||..|+
T Consensus 73 ~i~aIKiGmL--~s~e~i~~v~~~l~~~~~~~~~~~~vVlDPVl~sssG~~L~~~~~~~~~~~~~Llp~a~viTPN~~Ea 150 (321)
T PTZ00493 73 TIDVVKLGVL--YSKKIISLVHNYITNMNKKRGKKLLVVFDPVFVSSSGCLLVENLEYIKFALDLICPISCIITPNFYEC 150 (321)
T ss_pred CCCEEEECCc--CCHHHHHHHHHHHHHhcccccCCCeEEECCceEECCCCccCCcHHHHHHHHHHhhccCEEECCCHHHH
Confidence 4577888753 333233344444432211 1 2248999942221 1111 1223334456999999999999999
Q ss_pred hhhcC-----CC-CCCchHHHHHHhcC-CCCeEEEEecCCCc------e------EEEec---------------C----
Q 024908 136 TFLTG-----GD-DHNDDNVVLEKLFH-PNLKLLIVTEGSKG------C------RYYTK---------------E---- 177 (260)
Q Consensus 136 ~~l~g-----~~-~~~~~~~~~~~l~~-~g~~~vivt~G~~G------~------~~~~~---------------~---- 177 (260)
+.|+| .. ..+++..+++.|.+ .|+++|+|+-|... . +++.+ +
T Consensus 151 ~~L~g~~~~~~~~~~~~~~~aA~~l~~~~G~~~VliKGGh~~~~~~~~~~~~~~D~l~~~~~~~~~~~~~~~~~~~~~~~ 230 (321)
T PTZ00493 151 KVILEALDCQMDLSKANMTELCKLVTEKLNINACLFKSCNVGENSAEENEVYAVDHLCIRNVGSYPTGEKQQIDAGGVTY 230 (321)
T ss_pred HHHhCCCcccCCCCHHHHHHHHHHHHHhcCCCEEEECcCCCcccccccccccceeEEecCCccccccccccccccccccc
Confidence 99998 22 23345567788886 69999999976521 1 33321 1
Q ss_pred --ceeeecCcccccccCCCCchHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHhhHHhhh
Q 024908 178 --FKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTE 237 (260)
Q Consensus 178 --~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~~~~ 237 (260)
..+++.....+..+++|+||+|++++++.|++|.+ +++|++.|...-...+..
T Consensus 231 ~~~~~~~~~~ri~~~~~hGTGc~fASAIAa~LA~G~~-------l~~Av~~A~~fv~~aI~~ 285 (321)
T PTZ00493 231 LYDVYKLRSKRKPGKDIHGTGCTLSTAIACYLAKKHN-------ILQSCIESKKYIYNCIRY 285 (321)
T ss_pred cceEEEEEecccCCCCCCChHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHHH
Confidence 12344444455567899999999999999999999 999999998887777765
No 75
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=99.36 E-value=5.5e-11 Score=97.41 Aligned_cols=163 Identities=18% Similarity=0.099 Sum_probs=107.3
Q ss_pred hhhcCccEEEEccccCCCchhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhh--hCCEEecCHHHHh
Q 024908 59 NLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWD--QADIIKVSDDEIT 136 (260)
Q Consensus 59 ~~~~~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~--~~dvl~~n~~E~~ 136 (260)
+..+.+|.++++-= ...+...+.+...++.+++.+.++++||...... . ........+++ ++++++||..|+.
T Consensus 50 ~~~~~~~alvi~~G-~l~~~~~~~i~~~~~~a~~~~~pvVlDpv~~~~~---~-~~~~~~~~ll~~~~~~vItPN~~E~~ 124 (263)
T PRK09355 50 EMAKIAGALVINIG-TLTEERIEAMLAAGKIANEAGKPVVLDPVGVGAT---S-YRTEFALELLAEVKPAVIRGNASEIA 124 (263)
T ss_pred HHHHhcCceEEeCC-CCCHHHHHHHHHHHHHHHhcCCCEEECCcccCcc---h-hhHHHHHHHHHhcCCcEecCCHHHHH
Confidence 45567787776421 2233344446666677888899999999654321 1 11222233443 6899999999999
Q ss_pred hhcCCCC----------CCchHHHHHHhcCCCCeEEEEecCCCceEEEecCceeeecCcccccccCCCCchHHHHHHHHH
Q 024908 137 FLTGGDD----------HNDDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNC 206 (260)
Q Consensus 137 ~l~g~~~----------~~~~~~~~~~l~~~g~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~ 206 (260)
.|+|... .++....++.+.+++...|++|.+. -++++++..+.++.......+.+|+||++.|.+.+.
T Consensus 125 ~L~g~~~~~~~vd~~~~~~~~~~~a~~la~~~~~~VvvkG~~--d~I~~~~~~~~~~~g~~~~~~v~GtGc~L~~~iaa~ 202 (263)
T PRK09355 125 ALAGEAAETKGVDSTDGSADAVEIAKAAAKKYGTVVVVTGEV--DYITDGERVVSVHNGHPLMTKVTGTGCLLSAVVAAF 202 (263)
T ss_pred HHhCCCcccCCcCCCCCHHHHHHHHHHHHHHhCCEEEEECCC--cEEEeCCEEEEEeCCCcccCCcccccHHHHHHHHHH
Confidence 9998642 1133456677777666678888443 344455555555522223455699999999999999
Q ss_pred HHhcCcccccHHHHHHHHHHHHHHhhHHh
Q 024908 207 LAADQNLIKDENRLREALLFANACGALTV 235 (260)
Q Consensus 207 l~~g~~~~~~~~~~~~a~~~a~~~Aa~~~ 235 (260)
++.|.+ +.+|+..|...-+.+.
T Consensus 203 lA~g~~-------~~~A~~~A~~~~~~a~ 224 (263)
T PRK09355 203 AAVEKD-------YLEAAAAACAVYGIAG 224 (263)
T ss_pred HhcCCC-------HHHHHHHHHHHHHHHH
Confidence 999998 8888888776655543
No 76
>TIGR00694 thiM hydroxyethylthiazole kinase. This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.
Probab=99.31 E-value=1.2e-10 Score=94.67 Aligned_cols=162 Identities=15% Similarity=0.056 Sum_probs=104.9
Q ss_pred hhhcCccEEEEccccCCCchhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhh--hCCEEecCHHHHh
Q 024908 59 NLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWD--QADIIKVSDDEIT 136 (260)
Q Consensus 59 ~~~~~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~--~~dvl~~n~~E~~ 136 (260)
+..+.++.+.++-=.+ .+...+.+...++.+++.+.++++||..... +... ......+++ ++++++||..|+.
T Consensus 45 ~~~~~~~al~ik~G~l-~~~~~~~i~~~~~~~~~~~~pvVlDPV~~~~---s~~r-~~~~~~Ll~~~~~~vITpN~~E~~ 119 (249)
T TIGR00694 45 ELAKIAGALVINIGTL-DKESIEAMIAAGKSANELGVPVVLDPVGVGA---TKFR-TETALELLSEGRFAAIRGNAGEIA 119 (249)
T ss_pred HHHHHcCceEEeCCCC-CHHHHHHHHHHHHHHHhcCCCEEEccccccc---chhH-HHHHHHHHhhcCCceeCCCHHHHH
Confidence 4556677665542122 2234566667777788889999999964433 2222 233345666 4799999999999
Q ss_pred hhcCCCC----------CCchHHHHHHhcCCCCeEEEEecCCCceEEEecCceeeecCcccccccCCCCchHHHHHHHHH
Q 024908 137 FLTGGDD----------HNDDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNC 206 (260)
Q Consensus 137 ~l~g~~~----------~~~~~~~~~~l~~~g~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~ 206 (260)
.|+|... .++....++.+.+++...|++|-+ . -++++++..+.+..-....-..+|.||++.+.+.+.
T Consensus 120 ~L~g~~~~~~gvd~~~~~~d~~~~a~~la~~~~~~VllkG~-~-D~i~~~~~~~~~~~g~~~~~~~~GtGc~LssaIaa~ 197 (249)
T TIGR00694 120 SLAGETGLMKGVDSGEGAADAIRAAQQAAQKYGTVVVITGE-V-DYVSDGTSVYTIHNGTELLGKITGSGCLLGSVVAAF 197 (249)
T ss_pred HHhCCCCCCCCcCCccchHHHHHHHHHHHHHhCCEEEEECC-C-cEEEeCCEEEEECCCChHHhCCccchHHHHHHHHHH
Confidence 9998541 223445677777764447888744 2 345555555554332211222579999999999999
Q ss_pred HHhcCcccccHHHHHHHHHHHHHHhhHH
Q 024908 207 LAADQNLIKDENRLREALLFANACGALT 234 (260)
Q Consensus 207 l~~g~~~~~~~~~~~~a~~~a~~~Aa~~ 234 (260)
+++|.+ +.+|+..|...-...
T Consensus 198 LA~g~~-------~~~A~~~A~~~~~~a 218 (249)
T TIGR00694 198 CAVEED-------PLDAAISACLLYKIA 218 (249)
T ss_pred HhcCCC-------HHHHHHHHHHHHHHH
Confidence 999999 889988887444433
No 77
>KOG2598 consensus Phosphomethylpyrimidine kinase [Coenzyme transport and metabolism; Transcription]
Probab=99.14 E-value=1.5e-09 Score=91.14 Aligned_cols=163 Identities=16% Similarity=0.047 Sum_probs=115.7
Q ss_pred CccEEEEccccCCCchhHHHHHHHHHHHHHCCCeEEEcCCC---CCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhc
Q 024908 63 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNL---RLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLT 139 (260)
Q Consensus 63 ~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~---~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~ 139 (260)
+|+++..|.+ ..+.....+.+.+++- +-.++++||.. ........+...-..++++|.+|+++||..|+..|.
T Consensus 92 ~C~VvKTGML--~~~~I~~vi~q~l~~~--~~~klVvDPVivatsG~~l~~~divsl~~e~l~P~adiltPNI~Ea~~Ll 167 (523)
T KOG2598|consen 92 KCDVVKTGML--PSPEIVKVIEQSLQKF--NIPKLVVDPVIVATSGSSLAGKDIVSLFIEELLPFADILTPNIPEAFILL 167 (523)
T ss_pred cccEEeecCc--CchHHHHHHHHHHHhh--cCcceeecceEEeccCCcccCCccHHHHHHHhhhhHHHhCCChHHHHHHH
Confidence 5778877753 3333334444444432 22468889821 112222345667778899999999999999999998
Q ss_pred CCC--------CCCchHHHHHHhcCCCCeEEEEecCCCc-----------------eEEEecCceeeecCcccccccCCC
Q 024908 140 GGD--------DHNDDNVVLEKLFHPNLKLLIVTEGSKG-----------------CRYYTKEFKGRVPGVKTKAVDTTG 194 (260)
Q Consensus 140 g~~--------~~~~~~~~~~~l~~~g~~~vivt~G~~G-----------------~~~~~~~~~~~~~~~~~~~vdt~G 194 (260)
+.. +..++.+.+..+.+.|+|+|+|..|.-. -+++.+++++.++.+...-.+++|
T Consensus 168 ~~~~~~~~~i~~v~di~~~~~~ihk~gpk~VlvkGghiP~~~~~~~s~d~~~~~~~DvlydG~~F~~f~~~~~~t~~tHG 247 (523)
T KOG2598|consen 168 KKEKREISKIQSVFDIAKDAAKIHKLGPKNVLVKGGHIPFNKNMMTSKDDSDKYTVDVLYDGKEFYIFKSPYLATKHTHG 247 (523)
T ss_pred hhcccCCcccccHHHHHHHHHHHHhcCcceEEEeCCCcCccccccccCcccCCceEEEEEecceEEEecccccccccccC
Confidence 842 2335566788899999999999987421 134455567777777778889999
Q ss_pred CchHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHhhHHhh
Q 024908 195 AGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVT 236 (260)
Q Consensus 195 aGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~~~ 236 (260)
.|.++++++.+.|+.|.+ +.+|++.|...-=..++
T Consensus 248 tgCtLaSAIASnLA~g~s-------l~qAv~~ai~yvq~Ai~ 282 (523)
T KOG2598|consen 248 TGCTLASAIASNLARGYS-------LLQAVQGAIEYVQNAIA 282 (523)
T ss_pred ccchHHHHHHHHHhhcCC-------HHHHHHHHHHHHHHHHH
Confidence 999999999999999999 99999988765544443
No 78
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=99.02 E-value=8e-09 Score=81.72 Aligned_cols=148 Identities=22% Similarity=0.141 Sum_probs=93.8
Q ss_pred hhcCccEEEEccccCCCchhHHHHHHHHHHHHHCCC--eEEEcC--CCCCCCCCCHHHHHHHHHH-HhhhCCEEecCHHH
Q 024908 60 LIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGS--ILSYDP--NLRLPLWPSEEAAREGIMS-IWDQADIIKVSDDE 134 (260)
Q Consensus 60 ~~~~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~~--~v~~d~--~~~~~~~~~~~~~~~~~~~-~l~~~dvl~~n~~E 134 (260)
.+..+|.+..+ + +........+...+++.++.+- .-++|| +...+++.. +...+.+.+ +.+.+|+++||.-|
T Consensus 78 n~~~Y~~vLTG-Y-~~n~~~l~~i~~iv~~lk~~np~~~wv~DPVmGDnG~lYV~-eelipvYr~~i~~ladiiTPNqFE 154 (308)
T KOG2599|consen 78 NLNKYDAVLTG-Y-LPNVSFLQKIADIVKKLKKKNPNLTWVCDPVMGDNGRLYVP-EELIPVYRDLIIPLADIITPNQFE 154 (308)
T ss_pred cccccceeeee-c-cCChhHHHHHHHHHHHHHhcCCCeEEEeCccccCCccEecc-HHHHHHHHHhhcchhhhcCCcchh
Confidence 33456665444 3 2333345566666666666543 346798 344455543 444445555 45569999999999
Q ss_pred HhhhcCCCC--CCchHHHHHHhcCCCCeEEEEecCCC----c-eEEEec----CceeeecCcccccccCCCCchHHHHHH
Q 024908 135 ITFLTGGDD--HNDDNVVLEKLFHPNLKLLIVTEGSK----G-CRYYTK----EFKGRVPGVKTKAVDTTGAGDSFVSGI 203 (260)
Q Consensus 135 ~~~l~g~~~--~~~~~~~~~~l~~~g~~~vivt~G~~----G-~~~~~~----~~~~~~~~~~~~~vdt~GaGDaf~Ag~ 203 (260)
++.|+|... .++..++++.|.++|++.||||...- | .+++-+ .+.+.+..+++. .--+|.||.|+|-+
T Consensus 155 ~EiLtg~~I~t~eda~~a~~~lhq~~v~~vVITS~~~~~~~g~~l~c~gs~~~~~~f~~~ipki~-~~FtGTGDLfsaLL 233 (308)
T KOG2599|consen 155 AEILTGMEIRTEEDAKRAVEKLHQKGVKTVVITSFDLGEFTGETLRCIGSSCGSERFRYLIPKID-GVFTGTGDLFSALL 233 (308)
T ss_pred hhhhcCCeeccHHHHHHHHHHHHHhCCCEEEEEeeeeCCCCCcEEEEEEeccCCceEEEEecccc-eEEecccHHHHHHH
Confidence 999999874 44556688999999999999997542 4 222211 133333333322 23589999999999
Q ss_pred HHHHHhcC
Q 024908 204 LNCLAADQ 211 (260)
Q Consensus 204 ~~~l~~g~ 211 (260)
++.+.+..
T Consensus 234 la~~~~~~ 241 (308)
T KOG2599|consen 234 LAWLHESP 241 (308)
T ss_pred HHHHhcCC
Confidence 88887753
No 79
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=98.97 E-value=3.5e-09 Score=89.51 Aligned_cols=156 Identities=19% Similarity=0.224 Sum_probs=107.9
Q ss_pred CccEEEEccccCCCchhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHH-hhhCCEEecCHHHHhhhcCC
Q 024908 63 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSI-WDQADIIKVSDDEITFLTGG 141 (260)
Q Consensus 63 ~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~-l~~~dvl~~n~~E~~~l~g~ 141 (260)
.+++|.+.+ +++...+..+++ ++.+..+|+|+|.. ..+....+.-+ .-.++.++||..|+-.....
T Consensus 425 ~a~~I~~Ds-----NiS~~~Ma~il~-ak~~k~~V~fEPTd-------~~k~~K~fk~l~v~~i~~i~PN~~Ell~a~k~ 491 (614)
T KOG3009|consen 425 SADFILLDS-----NISVPVMARILE-AKKHKKQVWFEPTD-------IDKVKKVFKTLLVGAITAISPNANELLKAAKL 491 (614)
T ss_pred cCCEEEEcC-----CCCHHHHHHHHH-hhhccCceEecCCC-------chhhhhhhhhcceeeEEeeCCCHHHHHHHhhc
Confidence 788885544 556678888888 89999999999973 33333333322 23589999999998543221
Q ss_pred C----CC------CchHHHHHH---hcCCCCeEEEEecCCCceEEEecC-----ceeeecCccc--ccccCCCCchHHHH
Q 024908 142 D----DH------NDDNVVLEK---LFHPNLKLLIVTEGSKGCRYYTKE-----FKGRVPGVKT--KAVDTTGAGDSFVS 201 (260)
Q Consensus 142 ~----~~------~~~~~~~~~---l~~~g~~~vivt~G~~G~~~~~~~-----~~~~~~~~~~--~~vdt~GaGDaf~A 201 (260)
. ++ +...+.++. ........+|+|...+|+++...+ .....+++.. ++++..||||+|++
T Consensus 492 ~~v~~nps~~q~~~~~~~~~~~~~~k~~~~~s~~I~tl~~~G~l~~yr~k~g~l~~~s~~p~~~~~n~vsvsgaGdsf~~ 571 (614)
T KOG3009|consen 492 CHVSVNPSVIQTADGVLELIEKEKTKLLLNTSIFIVTLANKGSLVVYRNKLGQLEFQSLPPPLQMNNVVSVSGAGDSFNS 571 (614)
T ss_pred CceeeChhhhccchHHHHHHHHHHHHhhcccceEEEEeccCceEEEecCCCCCcccccCCCcccccceeEeccCCccccc
Confidence 1 11 111122222 223556679999999999887655 2223344433 79999999999999
Q ss_pred HHHHHHHhcCcccccHHHHHHHHHHHHHHhhHHhhhc
Q 024908 202 GILNCLAADQNLIKDENRLREALLFANACGALTVTER 238 (260)
Q Consensus 202 g~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~~~~~ 238 (260)
|++++++++.+ +.+++.-|..++.+.++.-
T Consensus 572 g~i~~l~~~~~-------v~es~~gg~~~~ralls~s 601 (614)
T KOG3009|consen 572 GVIAGLAHNKT-------VVESLQGGQECARALLSTS 601 (614)
T ss_pred ceeehhhcCcc-------hHhhccccHHHHHHHHhcc
Confidence 99999999999 9999999977777766553
No 80
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=98.40 E-value=5.4e-05 Score=60.83 Aligned_cols=147 Identities=18% Similarity=0.143 Sum_probs=91.8
Q ss_pred hhhcCccEEEEccccCCCchhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHh--hhCCEEecCHHHHh
Q 024908 59 NLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIW--DQADIIKVSDDEIT 136 (260)
Q Consensus 59 ~~~~~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l--~~~dvl~~n~~E~~ 136 (260)
+..+.++.++++-=. ..+...+.+....+.+++.++|+++||..-.. .....+...+++ .++++++.|..|..
T Consensus 45 e~~~~a~al~iNiGT-l~~~~~~~m~~A~~~A~~~~~PvVLDPVgvGa----s~~R~~~~~~LL~~~~~~vIrGN~sEI~ 119 (246)
T PF02110_consen 45 EFASIADALVINIGT-LTDERIEAMKKAAKAANELGIPVVLDPVGVGA----SKFRTEFALELLNNYKPTVIRGNASEIA 119 (246)
T ss_dssp HHHHCTSEEEEESTT-SSHHHHHHHHHHHHHHHHTT--EEEE-TTBTT----BHHHHHHHHHHHCHS--SEEEEEHHHHH
T ss_pred HHHHHcCEEEEECCC-CCHhHHHHHHHHHHHHHHcCCCEEEeCcccCC----cHHHHHHHHHHHHhCCCcEEEeCHHHHH
Confidence 344566766554212 33445678888899999999999999964432 233455556676 57999999999999
Q ss_pred hhcCCCCC----------CchHHHHHHhcCCCCeEEEEecCCCceEEEecCceeeecCcccccccCCCCchHHHHHHHHH
Q 024908 137 FLTGGDDH----------NDDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNC 206 (260)
Q Consensus 137 ~l~g~~~~----------~~~~~~~~~l~~~g~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~ 206 (260)
.|.|.... .+....++.+.++....|++| |+.-. +.++...+.++.-..-.-.-||+|+...|-+.+.
T Consensus 120 aLag~~~~~kGVDs~~~~~~~~~~a~~lA~k~~~vVvvT-G~~D~-Isdg~~~~~i~nG~~~l~~itGtGC~lgaliaaf 197 (246)
T PF02110_consen 120 ALAGEDSKAKGVDSGDSDEDAIEAAKQLAQKYNCVVVVT-GEVDY-ISDGNRVYRIPNGSPLLSKITGTGCMLGALIAAF 197 (246)
T ss_dssp HHHTCCCCSCSSSSSCGSHHHHHHHHHHHHHTTSEEEEE-SSSEE-EEESSCEEEECSSSGGGGGSTTHHHHHHHHHHHH
T ss_pred HHhCcCCCCCCcCcCCcchHHHHHHHHHHHhcCCEEEEe-cCCcE-EECCCeEEEeCCCChHhcceeccchHHHHHHHHH
Confidence 99886421 112346667776554566666 55433 3445556665543333445699999988888777
Q ss_pred HHhcCc
Q 024908 207 LAADQN 212 (260)
Q Consensus 207 l~~g~~ 212 (260)
+....+
T Consensus 198 ~av~~d 203 (246)
T PF02110_consen 198 LAVAED 203 (246)
T ss_dssp HCCCSS
T ss_pred Hhcccc
Confidence 777555
No 81
>PRK10565 putative carbohydrate kinase; Provisional
Probab=98.22 E-value=5.4e-05 Score=67.83 Aligned_cols=145 Identities=12% Similarity=0.050 Sum_probs=87.7
Q ss_pred hcCccEEEEccccCCCchhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHH--hhhCCEEecCHHHHhhh
Q 024908 61 IKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSI--WDQADIIKVSDDEITFL 138 (260)
Q Consensus 61 ~~~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~--l~~~dvl~~n~~E~~~l 138 (260)
++.+|.+.++.=...++ ....+++.+++.+.++++|+. . ...+... .....+++||..|+..|
T Consensus 318 ~~~~~a~viGpGlg~~~----~~~~~~~~~~~~~~P~VLDAd--------a---L~ll~~~~~~~~~~VLTPh~gE~~rL 382 (508)
T PRK10565 318 LEWADVVVIGPGLGQQE----WGKKALQKVENFRKPMLWDAD--------A---LNLLAINPDKRHNRVITPHPGEAARL 382 (508)
T ss_pred hhcCCEEEEeCCCCCCH----HHHHHHHHHHhcCCCEEEEch--------H---HHHHhhCccccCCeEECCCHHHHHHH
Confidence 35678777663222222 223445666777889999984 2 1111110 11246999999999999
Q ss_pred cCCCCCC---chHHHHHHhcCCCCeEEEEecCCCceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCcccc
Q 024908 139 TGGDDHN---DDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIK 215 (260)
Q Consensus 139 ~g~~~~~---~~~~~~~~l~~~g~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~ 215 (260)
++....+ +....++.+.++....|+++ |.. .++.++++..++-....+-.-++|.||.+++-+.+.+++|.+
T Consensus 383 ~~~~~~~v~~~~~~~a~~~a~~~~~~vvlK-G~~-~iI~~~~~~~~~~~~G~~~ma~~GsGDvLaGiIaalla~g~~--- 457 (508)
T PRK10565 383 LGCSVAEIESDRLLSARRLVKRYGGVVVLK-GAG-TVIAAEPDALAIIDVGNAGMASGGMGDVLSGIIGALLGQKLS--- 457 (508)
T ss_pred hCCChhhhhhhHHHHHHHHHHHhCCEEEEe-CCC-cEEEcCCceEEEECCCCCCCCCCChHHHHHHHHHHHHHcCCC---
Confidence 9854322 22334556665444456664 553 345554333333333334456699999999988888888988
Q ss_pred cHHHHHHHHHHHHH
Q 024908 216 DENRLREALLFANA 229 (260)
Q Consensus 216 ~~~~~~~a~~~a~~ 229 (260)
+.+|+..|+.
T Consensus 458 ----~~~Aa~~a~~ 467 (508)
T PRK10565 458 ----PYDAACAGCV 467 (508)
T ss_pred ----HHHHHHHHHH
Confidence 7777777763
No 82
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=98.12 E-value=0.00014 Score=58.82 Aligned_cols=171 Identities=16% Similarity=0.053 Sum_probs=98.4
Q ss_pred hhhcCccEEEEccccCCCchhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHH---HhhhCCEEecCHHHH
Q 024908 59 NLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMS---IWDQADIIKVSDDEI 135 (260)
Q Consensus 59 ~~~~~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~---~l~~~dvl~~n~~E~ 135 (260)
..++++|.+.++.=.-..+. ...+++...+...++++|-. . ...+.. ..+..-|++|+..|+
T Consensus 63 ~~~~~~~av~iGPGlg~~~~----~~~~~~~~~~~~~p~VlDAD----------a-L~~l~~~~~~~~~~~IlTPH~gE~ 127 (242)
T PF01256_consen 63 ELLEKADAVVIGPGLGRDEE----TEELLEELLESDKPLVLDAD----------A-LNLLAENPKKRNAPVILTPHPGEF 127 (242)
T ss_dssp HHHCH-SEEEE-TT-SSSHH----HHHHHHHHHHHCSTEEEECH----------H-HHCHHHCCCCSSSCEEEE-BHHHH
T ss_pred hhhccCCEEEeecCCCCchh----hHHHHHHHHhhcceEEEehH----------H-HHHHHhccccCCCCEEECCCHHHH
Confidence 45688999988732222322 22244444555678999952 1 111222 345678899999999
Q ss_pred hhhcCCCC--CCchHHHHHHhcCCCCeEEEEecCCCceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCcc
Q 024908 136 TFLTGGDD--HNDDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNL 213 (260)
Q Consensus 136 ~~l~g~~~--~~~~~~~~~~l~~~g~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~~~ 213 (260)
..|++... .++....++.+.+..-..| |=.|..-.+...++..+..+ ....-.-+-|.||.+++-+..-++++.+
T Consensus 128 ~rL~~~~~~~~~~~~~~a~~~a~~~~~~v-vLKG~~t~I~~p~~~~~~n~-~gn~~la~gGsGDvLaGii~~llaq~~~- 204 (242)
T PF01256_consen 128 ARLLGKSVEIQEDRIEAAREFAKEYGAVV-VLKGAVTIIASPGGRVYVNP-TGNPGLATGGSGDVLAGIIAGLLAQGYD- 204 (242)
T ss_dssp HHHHTTTCHHCCSHHHHHHHHHHHHTSEE-EEESTSSEEEEETSEEEEE-----GGGSSTTHHHHHHHHHHHHHHHTSS-
T ss_pred HHHhCCcccchhhHHHHHHHHHhhcCcEE-EEeCCCcEEEecCcceeEeC-CCCCCCCCCCcccHHHHHHHHHHHccCC-
Confidence 99999876 3444445666665322244 44466555444444444443 2334567889999999888888899998
Q ss_pred cccHHHHHHHHHHHHHHh---hHHhhhcCCCCCCCCHHHHHHHHh
Q 024908 214 IKDENRLREALLFANACG---ALTVTERGAIPALPTKEAALKLLH 255 (260)
Q Consensus 214 ~~~~~~~~~a~~~a~~~A---a~~~~~~g~~~~~~~~~~l~~~~~ 255 (260)
+.++...|+..= +..+...... + ....+|.+.+.
T Consensus 205 ------~~~Aa~~av~lHg~Ag~~~~~~~~~-~-~~a~dli~~iP 241 (242)
T PF01256_consen 205 ------PFEAACLAVYLHGRAGDLAAEKYGR-G-MLASDLIDNIP 241 (242)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHCTTCSS-C---HHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHhCCC-c-CcHHHHHHhcC
Confidence 888887776443 3333332222 2 46677766654
No 83
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=98.11 E-value=0.0005 Score=54.95 Aligned_cols=146 Identities=16% Similarity=0.101 Sum_probs=88.9
Q ss_pred hhcCccEEEEccccCCCchhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhh--CCEEecCHHHHhh
Q 024908 60 LIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQ--ADIIKVSDDEITF 137 (260)
Q Consensus 60 ~~~~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~--~dvl~~n~~E~~~ 137 (260)
..+-++.+.++-=. .++...+.+....+.+++.+.|+++||..-.. .........+++.+ +++++.|..|...
T Consensus 52 ~~kia~AL~INIGT-L~~~~~~~m~~A~~~An~~~~PvvLDPVgvgA----t~~R~~~~~~LL~~~~~~~IrGN~sEI~~ 126 (265)
T COG2145 52 FAKIADALLINIGT-LSAERIQAMRAAIKAANESGKPVVLDPVGVGA----TKFRTKFALELLAEVKPAAIRGNASEIAA 126 (265)
T ss_pred HHHhccceEEeecc-CChHHHHHHHHHHHHHHhcCCCEEecCccCCc----hHHHHHHHHHHHHhcCCcEEeccHHHHHH
Confidence 33445544433112 33445778888999999999999999954332 23334555566664 6999999999999
Q ss_pred hcCCCC----------CCchHHHHHHhcCCCCeEEEEecCCCceEEEecCceeeecCcccccccCCCCchHHHHHHHHHH
Q 024908 138 LTGGDD----------HNDDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCL 207 (260)
Q Consensus 138 l~g~~~----------~~~~~~~~~~l~~~g~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l 207 (260)
|.|... ..+...+++.+.+.....+++| |+.- ++.+++..+.+..-..-.-.-||+|+...|-..+.+
T Consensus 127 Lag~~~~~kGVDa~~~~~~~~~~a~~~A~~~~~vvvvT-G~vD-~Isdg~~~~~i~nG~pll~~ItGtGCllgav~aaF~ 204 (265)
T COG2145 127 LAGEAGGGKGVDAGDGAADAIEAAKKAAQKYGTVVVVT-GEVD-YISDGTRVVVIHNGSPLLGKITGTGCLLGAVVAAFL 204 (265)
T ss_pred HhcccccccccccccchhhHHHHHHHHHHHhCcEEEEE-CCee-EEEcCCeEEEEECCCcHHhhhhccccHHHHHHHHHH
Confidence 986531 1122334455554433455555 5533 344444454444332234456899998877777777
Q ss_pred HhcCc
Q 024908 208 AADQN 212 (260)
Q Consensus 208 ~~g~~ 212 (260)
+...+
T Consensus 205 av~~d 209 (265)
T COG2145 205 AVEKD 209 (265)
T ss_pred hcCCC
Confidence 76665
No 84
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=97.58 E-value=0.0018 Score=51.69 Aligned_cols=169 Identities=14% Similarity=0.110 Sum_probs=98.1
Q ss_pred hhhhcCccEEEEccccCCCchhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhh-CCEEecCHHHHh
Q 024908 58 KNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQ-ADIIKVSDDEIT 136 (260)
Q Consensus 58 ~~~~~~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~-~dvl~~n~~E~~ 136 (260)
+.++++-+.++++.=.-.++.....+..+++.++..++++++|-..- |-........+ -.+ .-+++||.-|+.
T Consensus 96 ~k~L~RlhavVIGPGLGRdp~~~k~i~~iley~~~~dvP~VIDaDGL---~Lv~q~~e~l~---~~~~~viLTPNvvEFk 169 (306)
T KOG3974|consen 96 EKLLQRLHAVVIGPGLGRDPAILKEIAKILEYLRGKDVPLVIDADGL---WLVEQLPERLI---GGYPKVILTPNVVEFK 169 (306)
T ss_pred HHHHhheeEEEECCCCCCCHHHHHHHHHHHHHHhcCCCcEEEcCCce---Eehhhchhhhh---ccCceeeeCCcHHHHH
Confidence 45788999998875445677778888899999999999999997432 21111111111 112 257899999999
Q ss_pred hhcCCCC-CCchHHHHHHhcCCCCeEEEEecCCCceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCcccc
Q 024908 137 FLTGGDD-HNDDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIK 215 (260)
Q Consensus 137 ~l~g~~~-~~~~~~~~~~l~~~g~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~ 215 (260)
.|++..- ..+....+..|...-....+|-.|+.-.++...++.... +.+-...-.=|-||..++.+...++...- ..
T Consensus 170 RLcd~~l~~~d~~~~~~~L~~~l~nv~vvqKG~~D~ils~~~ev~~~-s~eGs~kRcGGQGDiLaGsla~fl~w~k~-~~ 247 (306)
T KOG3974|consen 170 RLCDAELDKVDSHSQMQHLAAELMNVTVVQKGESDKILSPDSEVRVC-STEGSLKRCGGQGDILAGSLATFLSWAKL-LS 247 (306)
T ss_pred HHHHHhhccccchHHHHHHHHHhcCeEEEEecCCceeeCCCCeeEEc-cCCCCccccCCCcchhhhHHHHHHHHHHh-cc
Confidence 9988631 122222334444333334667777766644433333332 22333445568899999888776644310 00
Q ss_pred cHHHHHHHHHHHHHHhhHHhh
Q 024908 216 DENRLREALLFANACGALTVT 236 (260)
Q Consensus 216 ~~~~~~~a~~~a~~~Aa~~~~ 236 (260)
.+ ..++...|..+++..++
T Consensus 248 ~e--~~~~~~~a~~a~s~~vr 266 (306)
T KOG3974|consen 248 GE--QDSAAFLAAVAGSIMVR 266 (306)
T ss_pred CC--ccchhhhhhhhhHHHHH
Confidence 00 33555555555554444
No 85
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=97.41 E-value=0.017 Score=47.73 Aligned_cols=173 Identities=13% Similarity=0.050 Sum_probs=90.8
Q ss_pred hcCccEEEEccccCCCchhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhh-hCCEEecCHHHHhhhc
Q 024908 61 IKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWD-QADIIKVSDDEITFLT 139 (260)
Q Consensus 61 ~~~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~-~~dvl~~n~~E~~~l~ 139 (260)
.++.|.+.++.=.-.++...+.+..+++... +++++|.. .-........... .--|++|+..|++.|+
T Consensus 99 ~~~~~avviGpGlG~~~~~~~~~~~~l~~~~---~p~ViDAD--------aL~~la~~~~~~~~~~~VlTPH~gEf~rL~ 167 (284)
T COG0063 99 VERADAVVIGPGLGRDAEGQEALKELLSSDL---KPLVLDAD--------ALNLLAELPDLLDERKVVLTPHPGEFARLL 167 (284)
T ss_pred hccCCEEEECCCCCCCHHHHHHHHHHHhccC---CCEEEeCc--------HHHHHHhCcccccCCcEEECCCHHHHHHhc
Confidence 4678888887322344433444444443322 78999974 1111111112221 2378899999999999
Q ss_pred CCCCCC---chHHHHHHhcCCCCeEEEEecCCCceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCccccc
Q 024908 140 GGDDHN---DDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKD 216 (260)
Q Consensus 140 g~~~~~---~~~~~~~~l~~~g~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~ 216 (260)
+.+..+ +....++.+.++.-..||++ |..-++.. ++...++-..-..---+=|.||+.++-+.+-|+++ +.
T Consensus 168 g~~~~~~~~~r~~~a~~~a~~~~~vvVLK-G~~tvI~~-~~g~~~~n~~G~~~ma~GGtGDvLaGii~alLAq~-~~--- 241 (284)
T COG0063 168 GTEVDEIEVDRLEAARELAAKYGAVVVLK-GAVTVIAD-PDGEVFVNPTGNPGMATGGTGDVLAGIIGALLAQG-PA--- 241 (284)
T ss_pred CCcccccccchHHHHHHHHHHcCCEEEEe-CCCCEEEc-CCCcEEEcCCCCHHhccCcchHHHHHHHHHHHhCC-CC---
Confidence 854322 22445566665544455554 66444443 44233332222223345689999987777777777 31
Q ss_pred HHHHHHHHHHH---HHHhhHHhhh-cCCCCCCCCHHHHHHHHhh
Q 024908 217 ENRLREALLFA---NACGALTVTE-RGAIPALPTKEAALKLLHT 256 (260)
Q Consensus 217 ~~~~~~a~~~a---~~~Aa~~~~~-~g~~~~~~~~~~l~~~~~~ 256 (260)
++.+|+..| +..|+..... .| -.+..++.+.+..
T Consensus 242 --~~~~Aa~~g~~~h~~ag~la~~~~g----~~~a~Dl~~~ip~ 279 (284)
T COG0063 242 --DPLEAAAAGAWLHGRAGELAAKKHG----GLTATDLIEAIPR 279 (284)
T ss_pred --CHHHHHHHHHHHHHHHHHHHhhccC----CCCHHHHHHHHHH
Confidence 134444443 3334433332 33 2466666655543
No 86
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=97.24 E-value=0.0071 Score=53.06 Aligned_cols=74 Identities=15% Similarity=0.062 Sum_probs=50.0
Q ss_pred cCccEEEEccccCCCch-h--------HHHHHHHHHHH--HHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEec
Q 024908 62 KQGSIFHYGSISLIAEP-C--------RSTQLAAMNLA--KESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKV 130 (260)
Q Consensus 62 ~~~d~v~~~~~~~~~~~-~--------~~~~~~~~~~a--~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~ 130 (260)
.+.|.+++||+..+.+. + .+...+.++.. ...++++-++..... +.......+..+++++|-+-.
T Consensus 221 ~~~D~avlSG~q~i~~~y~dg~~~~~~l~r~~~~i~~L~~~~~~i~iH~E~As~~----~~~ir~~i~~~ilp~vDSlGm 296 (463)
T PRK03979 221 KMVDGAILSGYQGIKEEYSDGKTAEYYLKRAKEDIKLLKKKNKDIKIHVEFASIQ----NREIRKKIITYILPHVDSVGM 296 (463)
T ss_pred cCCCEEEEechhhhhccccccccHHHHHHHHHHHHHHHhhCCCCceEEEEecccc----CHHHHHHHHHhhccccccccC
Confidence 35999999999887651 1 22223333333 234677878775432 355666677789999999999
Q ss_pred CHHHHhhhc
Q 024908 131 SDDEITFLT 139 (260)
Q Consensus 131 n~~E~~~l~ 139 (260)
|+.|+..+.
T Consensus 297 NE~ELa~l~ 305 (463)
T PRK03979 297 DETEIANIL 305 (463)
T ss_pred CHHHHHHHH
Confidence 999998654
No 87
>PF04587 ADP_PFK_GK: ADP-specific Phosphofructokinase/Glucokinase conserved region; InterPro: IPR007666 Although ATP is the most common phosphoryl group donor for kinases, certain hyperthermophilic archaea, such as Thermococcus litoralis and Pyrococcus furiosus, utilise unusual ADP-dependent glucokinases (ADPGKs) and phosphofructokinases (ADPPKKs) in their glycolytic pathways [, , ]. ADPGKs and ADPPFKs exhibit significant similarity, and form an ADP-dependent kinase (ADPK) family, which was tentatively named the PFKC family []. A ~460-residue ADPK domain is also found in a bifunctional ADP-dependent gluco/phosphofructo- kinase (ADP-GK/PFK) from Methanocaldococcus jannaschii (Methanococcus jannaschii) as well as in homologous hypothetical proteins present in several eukaryotes []. The whole structure of the ADPK domain can be divided into large and small alpha/beta subdomains. The larger subdomain, which carries the ADP binding site, consists of a twisted 12-stranded beta sheet flanked on both faces by 13 alpha helices and three 3(10) helices, forming an alpha/beta 3-layer sandwich. The smaller subdomain, which covers the active site, forms an alpha/beta two-layer structure containing 5 beta strands and four alpha helices. The ADP molecule is buried in a shallow pocket in the large subdomain. The binding of substrate sugar induces a structural change, the small domain closing to form a complete substrate sugar binding site [, , ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 1GC5_A 1L2L_A 3DRW_B 1U2X_A 1UA4_A.
Probab=96.83 E-value=0.039 Score=48.80 Aligned_cols=75 Identities=13% Similarity=0.139 Sum_probs=46.8
Q ss_pred hcCccEEEEccccCCCc---------hhHHHHHHHHHHHH-HCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEec
Q 024908 61 IKQGSIFHYGSISLIAE---------PCRSTQLAAMNLAK-ESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKV 130 (260)
Q Consensus 61 ~~~~d~v~~~~~~~~~~---------~~~~~~~~~~~~a~-~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~ 130 (260)
..+.|.+++||+.++.+ .-.+.+.+.++..+ ..++++-++..... +.+.....+..+++++|-+-+
T Consensus 207 ~~~~d~~vlSGlq~l~~~~~d~~~~~~~l~~~~~~i~~l~~~~~~~iH~E~As~~----d~~l~~~i~~~ilp~vDSlGm 282 (444)
T PF04587_consen 207 AFKPDLAVLSGLQMLDEFYFDGETYEERLKRLKEQIKLLKSNPDIPIHLELASFA----DEELRKEILEKILPHVDSLGM 282 (444)
T ss_dssp HTT-SEEEEE-GGG--TB-TTSTCHHHHHHHHHHHHHHHH-HTT-EEEEE----S----SHHHHHHHHHHHGGGSSEEEE
T ss_pred ccCCCEEEEeccccchhhccchhHHHHHHHHHHHHHHhccCCCCCceEEEecccc----CHHHHHHHHHHhhcccccccc
Confidence 35699999999988773 11222233333445 57888988876432 355667777789999999999
Q ss_pred CHHHHhhhc
Q 024908 131 SDDEITFLT 139 (260)
Q Consensus 131 n~~E~~~l~ 139 (260)
|+.|+..+.
T Consensus 283 NEqEL~~l~ 291 (444)
T PF04587_consen 283 NEQELANLL 291 (444)
T ss_dssp EHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 999999764
No 88
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=96.81 E-value=0.05 Score=47.74 Aligned_cols=99 Identities=16% Similarity=0.101 Sum_probs=63.4
Q ss_pred CccEEEEccccCCCc-hh-----HHHHHHH---HHHH--HHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecC
Q 024908 63 QGSIFHYGSISLIAE-PC-----RSTQLAA---MNLA--KESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVS 131 (260)
Q Consensus 63 ~~d~v~~~~~~~~~~-~~-----~~~~~~~---~~~a--~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n 131 (260)
+.|.+++||+.++.+ .+ .+...++ ++.. ...++++-++..... +.+.....+..+++++|-+-.|
T Consensus 210 ~~D~avlSG~q~l~d~y~dg~~~~e~l~~~~~~i~~l~~~~~~i~iH~E~As~~----~~~i~~~v~~~Ilp~VDSlGmN 285 (453)
T PRK14039 210 EMDGALISGFHLLLETYPDGSTYREKLEDSLAQLKWWKSKNEKLRIHAELGHFA----SKEIANSVFLILAGIVDSIGMN 285 (453)
T ss_pred CCCEEEEechhhhhhhcCCcccHHHHHHHHHHHHHHHHhcCCCceEEEEecCcc----cHHHHHHHHHHhhcccccccCC
Confidence 789999999987632 11 2222232 3333 224567888875432 3556677777899999999999
Q ss_pred HHHHhhhcCCC----------CCCchHHHHHHhcC-CCCeEEEEe
Q 024908 132 DDEITFLTGGD----------DHNDDNVVLEKLFH-PNLKLLIVT 165 (260)
Q Consensus 132 ~~E~~~l~g~~----------~~~~~~~~~~~l~~-~g~~~vivt 165 (260)
+.|+..+...- +.++..+++..|.+ .|.+.++|.
T Consensus 286 EqELa~l~~~~g~~~~~i~~~~~~~v~ea~~~l~~~~~le~l~vH 330 (453)
T PRK14039 286 EDELAMLANLHGIPAEGILEMNAEAIGEAACQLASESGLQRLIIH 330 (453)
T ss_pred HHHHHHHHHHcccchhhHhhcCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 99998876541 22233345566664 688776665
No 89
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=96.66 E-value=0.24 Score=43.47 Aligned_cols=148 Identities=18% Similarity=0.153 Sum_probs=88.4
Q ss_pred cCccEEEEccccCCCch---------hHHHHHHHHHHHHH-CCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecC
Q 024908 62 KQGSIFHYGSISLIAEP---------CRSTQLAAMNLAKE-SGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVS 131 (260)
Q Consensus 62 ~~~d~v~~~~~~~~~~~---------~~~~~~~~~~~a~~-~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n 131 (260)
..+|.+++||+..+.+. ..+...+.++..++ .++++-++..... +.......+..+++++|-+-.|
T Consensus 208 ~~~d~~vlSG~q~m~~~y~dg~~~~~~~er~~~~i~~L~~~~~i~iH~E~As~~----~~~l~~~i~~~ilp~vDSlGMN 283 (446)
T TIGR02045 208 EPVDGAILSGYQGIKEEYSDGKTAKYYLERAKEDIELLKKNKDLKIHVEFASIQ----NREIRKKVVTNIFPHVDSVGMD 283 (446)
T ss_pred hcccEEEEEchhhhhhhccCCccHhHHHHHHHHHHHHHhhCCCCeEEEEecccc----cHHHHHHHHHhhccccccccCC
Confidence 56899999999887643 22333444444433 6678888875432 3555666777899999999999
Q ss_pred HHHHhhhc---CCC----------CCCchHHHHHHhcC-CCCeEEEEecCCCceEEEecCceeeecCcccccccCCCCch
Q 024908 132 DDEITFLT---GGD----------DHNDDNVVLEKLFH-PNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGD 197 (260)
Q Consensus 132 ~~E~~~l~---g~~----------~~~~~~~~~~~l~~-~g~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGD 197 (260)
+.|+..+. |.. ..++...++.+|++ .|.+.+.|.. .+-+++ +...
T Consensus 284 E~ELa~ll~~lg~~~l~~~i~~~~~i~~vi~a~~~l~~~~~leri~vHT--~~y~l~-------i~~~------------ 342 (446)
T TIGR02045 284 EAEIANVLSVLGYDELSDRIFRYNRIEDLILGAKILLDELNLEVVQVHT--IYYIMY-------ITHA------------ 342 (446)
T ss_pred HHHHHHHHHHhcCCchhhhhhccccHHHHHHHHHHHHHHcCCCEEEEEe--cceeEE-------Eecc------------
Confidence 99998865 321 12233345555654 5776665542 122211 1100
Q ss_pred HHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHhhHHhhhcCCCCCCCCHHHHHH
Q 024908 198 SFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGAIPALPTKEAALK 252 (260)
Q Consensus 198 af~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~~~~~g~~~~~~~~~~l~~ 252 (260)
+ -|.+.+.+++|+.+|+.+||... ..|.. .+.++++.
T Consensus 343 ------------~--~p~~~~~~~~aL~f~~~~Aa~rA-~~G~i---~~~~d~~~ 379 (446)
T TIGR02045 343 ------------D--NPLSEEELRRSLEFSTILAATRA-SLGNI---ENPDDAEA 379 (446)
T ss_pred ------------C--CCCCHHHHHHHHHHHHHHHHHHH-hcCCC---CCHHHHHH
Confidence 0 01112238899999999999876 44533 35555544
No 90
>PRK14038 ADP-dependent glucokinase; Provisional
Probab=96.43 E-value=0.22 Score=43.81 Aligned_cols=146 Identities=16% Similarity=0.199 Sum_probs=87.2
Q ss_pred hhcCccEEEEccccCCCchhHHHH----HHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHH
Q 024908 60 LIKQGSIFHYGSISLIAEPCRSTQ----LAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEI 135 (260)
Q Consensus 60 ~~~~~d~v~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~ 135 (260)
...+.|.+++||+..+.+.+.+.. .+.++..++.++++=++..+.. .......+..+++++|-+-.|+.|+
T Consensus 221 i~~~~Dl~vlSG~q~l~~~~~~~~l~~~~~~l~~l~~~~i~iH~EfAs~~-----d~~~r~~i~~ilp~vDSlGmNE~EL 295 (453)
T PRK14038 221 IAKKAELAIISGLQALTEENYREPFETVREHLKVLNERGIPAHLEFAFTP-----DETVREEILGLLGKFYSVGLNEVEL 295 (453)
T ss_pred hccCCCEEEEEchhhhccccHHHHHHHHHHHHHhcCcCCceEEEEeeccc-----hHHHHHHHHhhCccccccccCHHHH
Confidence 346799999999988765333222 2222233345677777765321 2334445557999999999999999
Q ss_pred hhhcC---CC------------CCCchHHHHHHhcC-CCCeEEEEecCCCceEEEecCceeeecCcccccccCCCCchHH
Q 024908 136 TFLTG---GD------------DHNDDNVVLEKLFH-PNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSF 199 (260)
Q Consensus 136 ~~l~g---~~------------~~~~~~~~~~~l~~-~g~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGDaf 199 (260)
..+.. .+ ...+..+++..|++ .|.+.+.|.. .+-+++--+ .
T Consensus 296 a~ll~~lg~~~l~~~i~~~~~~~~~~v~e~~~~L~~~~gleri~vHT--~~y~l~i~~-------~-------------- 352 (453)
T PRK14038 296 ASIMEVMGEKTLAEKLLAKDPVDPIAVTEAMLKLAEKTGVKRIHFHT--YGYYLALTK-------Y-------------- 352 (453)
T ss_pred HHHHHHhccchhhhhhhhcCccCHHHHHHHHHHHHHHcCCCEEEEEe--cceeEEEec-------C--------------
Confidence 88664 21 12223345556664 5776655542 222222100 0
Q ss_pred HHHHHHHHHhcCcccccHHHHHHHHHHHHHHhhHHhhhcCCCCCCCCHHHHHHH
Q 024908 200 VSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGAIPALPTKEAALKL 253 (260)
Q Consensus 200 ~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~~~~~g~~~~~~~~~~l~~~ 253 (260)
.+.. +++|+.+|+.+||.... .|-+ .+.++++.-
T Consensus 353 ---------~~~~-------~~~aL~f~~~~AaarA~-~G~i---~~~~d~~~~ 386 (453)
T PRK14038 353 ---------RGEH-------VRDALLFAALAAAAKAM-LGNI---EKIDDVRKA 386 (453)
T ss_pred ---------CHHH-------HHHHHHHHHHHHHHHHH-cCCC---CCHHHHHHH
Confidence 3444 99999999999998875 4543 456665553
No 91
>cd01938 ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and phosphofructokinase (ADPPFK). ADPGK and ADPPFK are proteins that rely on ADP rather than ATP to donate a phosphoryl group. They are found in certain hyperthermophilic archaea and in higher eukaryotes. A functional ADPGK has been characterized in mouse and is assumed to be desirable during ischemia/hypoxia. ADPGK and ADPPFK contain a large and a small domain with the binding site located in a groove between the domains. Partial domain closing is seen when ADP is bound, and further domain closing is observed when glucose is also bound. The oligomerization state apparently varies depending on the species, with some existing as monomers, some as dimers, and some as tetramers.
Probab=86.90 E-value=5.8 Score=35.25 Aligned_cols=73 Identities=12% Similarity=0.126 Sum_probs=49.6
Q ss_pred CccEEEEccccCCCchh--HHHHHHHHHHHH------HCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHH
Q 024908 63 QGSIFHYGSISLIAEPC--RSTQLAAMNLAK------ESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDE 134 (260)
Q Consensus 63 ~~d~v~~~~~~~~~~~~--~~~~~~~~~~a~------~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E 134 (260)
+.|.+++||+.++++.+ .....+.+++++ +..+++=++..+. .+.+.....+..+++++|-+=.|+.|
T Consensus 205 ~pDl~vlSGlqmm~~~~~~~~~~~~~l~~~~~~l~~l~~~i~iH~E~As~----~d~~l~~~i~~~ilp~VDSlGmNEqE 280 (445)
T cd01938 205 QPDLAVLSGLQMMEGQSFDEGTRKELLERVKSILEILPPLIPIHLELAST----VDEELREEILHEVVPYVDSLGLNEQE 280 (445)
T ss_pred CCCEEEEechhhhcccCCChhhHHHHHHHHHHHHHhccccCcEEEEeccc----ccHHHHHHHHHHhcccccccccCHHH
Confidence 48999999998877643 223333333332 1236676776533 23556677777899999999999999
Q ss_pred Hhhhc
Q 024908 135 ITFLT 139 (260)
Q Consensus 135 ~~~l~ 139 (260)
+..+.
T Consensus 281 L~~l~ 285 (445)
T cd01938 281 LANLL 285 (445)
T ss_pred HHHHH
Confidence 98765
No 92
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=85.28 E-value=9.9 Score=30.18 Aligned_cols=75 Identities=7% Similarity=-0.024 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEec-----CHHHHhhhcCCCCCCchHHHHHHh
Q 024908 80 RSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKV-----SDDEITFLTGGDDHNDDNVVLEKL 154 (260)
Q Consensus 80 ~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~-----n~~E~~~l~g~~~~~~~~~~~~~l 154 (260)
.+.+.++++.+++.|+.+.+|.+.... .+.+..+++.+|.+.+ |.+.-+.++|... +.....++.+
T Consensus 53 ~~fl~~l~~~~k~~gi~~~leTnG~~~--------~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~~-~~il~nl~~l 123 (213)
T PRK10076 53 AEFATRFLQRLRLWGVSCAIETAGDAP--------ASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNL-PRVLENLRLL 123 (213)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCC--------HHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCCH-HHHHHHHHHH
Confidence 467888999999999999999875432 3455667778887654 4555567888653 2333345667
Q ss_pred cCCCCeEEE
Q 024908 155 FHPNLKLLI 163 (260)
Q Consensus 155 ~~~g~~~vi 163 (260)
.+.|.+..+
T Consensus 124 ~~~g~~v~i 132 (213)
T PRK10076 124 VSEGVNVIP 132 (213)
T ss_pred HhCCCcEEE
Confidence 777765433
No 93
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=82.42 E-value=19 Score=29.51 Aligned_cols=90 Identities=26% Similarity=0.246 Sum_probs=58.5
Q ss_pred CccEEEEccccCCCchhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecC----HHH-Hhh
Q 024908 63 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVS----DDE-ITF 137 (260)
Q Consensus 63 ~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n----~~E-~~~ 137 (260)
..+.|.++|--. -...+.+.++++.+++.|..+.+|.+.... ......+++.+|.+.++ .++ -+.
T Consensus 83 ~~~gvt~SGGEP--~~q~e~~~~~~~~ake~Gl~~~l~TnG~~~--------~~~~~~l~~~~D~v~~DlK~~~~~~y~~ 152 (260)
T COG1180 83 SGGGVTFSGGEP--TLQAEFALDLLRAAKERGLHVALDTNGFLP--------PEALEELLPLLDAVLLDLKAFDDELYRK 152 (260)
T ss_pred CCCEEEEECCcc--hhhHHHHHHHHHHHHHCCCcEEEEcCCCCC--------HHHHHHHHhhcCeEEEeeccCChHHHHH
Confidence 456665554222 245688999999999999999999875543 33335566667776543 334 777
Q ss_pred hcCCCCCCchHHHHHHhcCCCCeEEE
Q 024908 138 LTGGDDHNDDNVVLEKLFHPNLKLLI 163 (260)
Q Consensus 138 l~g~~~~~~~~~~~~~l~~~g~~~vi 163 (260)
++|... +...+.++.+.+.|+...+
T Consensus 153 ~tg~~~-~~vl~~~~~l~~~g~~ve~ 177 (260)
T COG1180 153 LTGADN-EPVLENLELLADLGVHVEI 177 (260)
T ss_pred HhCCCc-HHHHHHHHHHHcCCCeEEE
Confidence 887766 4444466677777765443
No 94
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=73.25 E-value=21 Score=29.06 Aligned_cols=82 Identities=15% Similarity=0.099 Sum_probs=53.9
Q ss_pred chhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHh------hhc--C--------
Q 024908 77 EPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEIT------FLT--G-------- 140 (260)
Q Consensus 77 ~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~------~l~--g-------- 140 (260)
....+-+..+.+.+++.|++++-++.. ...+..+.+++|++++-..+.+ ++. |
T Consensus 62 G~G~~gl~~L~~~~~~~Gl~~~Tev~d-----------~~~v~~~~e~vdilqIgs~~~~n~~LL~~va~tgkPVilk~G 130 (250)
T PRK13397 62 GLGLQGIRYLHEVCQEFGLLSVSEIMS-----------ERQLEEAYDYLDVIQVGARNMQNFEFLKTLSHIDKPILFKRG 130 (250)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeeCC-----------HHHHHHHHhcCCEEEECcccccCHHHHHHHHccCCeEEEeCC
Confidence 345567888888899999999988852 2223334447999986544432 222 1
Q ss_pred -CCCCCchHHHHHHhcCCCCeEEEEec-CCC
Q 024908 141 -GDDHNDDNVVLEKLFHPNLKLLIVTE-GSK 169 (260)
Q Consensus 141 -~~~~~~~~~~~~~l~~~g~~~vivt~-G~~ 169 (260)
..+.++...+++.+.+.|.+.+++.. |..
T Consensus 131 ~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~ 161 (250)
T PRK13397 131 LMATIEEYLGALSYLQDTGKSNIILCERGVR 161 (250)
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEEccccC
Confidence 12455666688888888888887776 653
No 95
>PHA00438 hypothetical protein
Probab=67.40 E-value=4.9 Score=25.88 Aligned_cols=17 Identities=29% Similarity=0.657 Sum_probs=15.0
Q ss_pred CCCCchHHHHHHHHHHH
Q 024908 192 TTGAGDSFVSGILNCLA 208 (260)
Q Consensus 192 t~GaGDaf~Ag~~~~l~ 208 (260)
..|..++|.|||++|+-
T Consensus 46 ~~G~SE~~IaGfl~Gl~ 62 (81)
T PHA00438 46 QAGYSEAFIAGFLAGLQ 62 (81)
T ss_pred HcCCcHHHHHHHHHHHH
Confidence 47999999999999973
No 96
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=67.15 E-value=29 Score=26.53 Aligned_cols=64 Identities=16% Similarity=0.125 Sum_probs=48.0
Q ss_pred CccEEEEccccCCCchhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHh
Q 024908 63 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEIT 136 (260)
Q Consensus 63 ~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~ 136 (260)
.++++-.+|..+ +.+.+..+-+..++.|+.++.||.+ .+++.+..+...+|.+.-.++...++.
T Consensus 22 d~~~I~T~Gs~i----~~~~i~~i~~~~~~rgVIIfTDpD~------~GekIRk~i~~~vp~~khafi~~~~a~ 85 (174)
T TIGR00334 22 DVDVIETNGSAL----KDETINLIKKAQKKQGVIILTDPDF------PGEKIRKKIEQHLPGYENCFIPKHLAK 85 (174)
T ss_pred CceEEEECCCcc----CHHHHHHHHHHhhcCCEEEEeCCCC------chHHHHHHHHHHCCCCeEEeeeHHhcC
Confidence 478888888644 3445555555567788888899974 367888888888888888888888875
No 97
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=62.95 E-value=76 Score=25.23 Aligned_cols=94 Identities=19% Similarity=0.143 Sum_probs=58.0
Q ss_pred hhcCccEEEEccccCCCchhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEe--cCHHHHhh
Q 024908 60 LIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIK--VSDDEITF 137 (260)
Q Consensus 60 ~~~~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~--~n~~E~~~ 137 (260)
.-..+|++.+.+.. +.+++...++.|++.|..+.+|+-.. | +..+....+.++ .+|++. .+.+ ++.
T Consensus 77 ~~aGAd~~tV~g~A-----~~~TI~~~i~~A~~~~~~v~iDl~~~---~-~~~~~~~~l~~~--gvd~~~~H~g~D-~q~ 144 (217)
T COG0269 77 FEAGADWVTVLGAA-----DDATIKKAIKVAKEYGKEVQIDLIGV---W-DPEQRAKWLKEL--GVDQVILHRGRD-AQA 144 (217)
T ss_pred HHcCCCEEEEEecC-----CHHHHHHHHHHHHHcCCeEEEEeecC---C-CHHHHHHHHHHh--CCCEEEEEeccc-Hhh
Confidence 44688999766642 45689999999999999999998432 2 245556666643 455544 3332 222
Q ss_pred hcCCCCCCchHHHHHHhcCCCCeEEEEecC
Q 024908 138 LTGGDDHNDDNVVLEKLFHPNLKLLIVTEG 167 (260)
Q Consensus 138 l~g~~~~~~~~~~~~~l~~~g~~~vivt~G 167 (260)
.|.....+....++++.+.|. .+-|+-|
T Consensus 145 -~G~~~~~~~l~~ik~~~~~g~-~vAVaGG 172 (217)
T COG0269 145 -AGKSWGEDDLEKIKKLSDLGA-KVAVAGG 172 (217)
T ss_pred -cCCCccHHHHHHHHHhhccCc-eEEEecC
Confidence 566654333335566666663 4566655
No 98
>PF10911 DUF2717: Protein of unknown function (DUF2717); InterPro: IPR020121 The proteins in this entry are uncharacterised.
Probab=61.57 E-value=7.1 Score=25.12 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=16.0
Q ss_pred cCCCCchHHHHHHHHHHHh
Q 024908 191 DTTGAGDSFVSGILNCLAA 209 (260)
Q Consensus 191 dt~GaGDaf~Ag~~~~l~~ 209 (260)
...|..++|.+||+.|+.-
T Consensus 45 r~~G~SE~~I~Gfl~Gl~~ 63 (77)
T PF10911_consen 45 RKQGWSESYILGFLAGLQY 63 (77)
T ss_pred HHccccHHHHHHHHHHHHH
Confidence 3469999999999999854
No 99
>KOG4184 consensus Predicted sugar kinase [Carbohydrate transport and metabolism; General function prediction only]
Probab=57.18 E-value=19 Score=30.74 Aligned_cols=75 Identities=12% Similarity=0.178 Sum_probs=46.8
Q ss_pred cCccEEEEccccCCCchhHHHHHHHHHHHHH------CCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHH
Q 024908 62 KQGSIFHYGSISLIAEPCRSTQLAAMNLAKE------SGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEI 135 (260)
Q Consensus 62 ~~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~------~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~ 135 (260)
-+.|+++++|+.+++-.+.+.-.+-++..++ .|+++=++..+- .+..-.......++|++|=+=+|+.|+
T Consensus 237 fqPdLvVvsGlhmme~qske~r~~rl~~V~r~L~~iP~gip~HlElaS~----~~~~l~~~i~h~VlPyVdSLGlNEQEL 312 (478)
T KOG4184|consen 237 FQPDLVVVSGLHMMEMQSKEEREARLQQVVRSLSDIPTGIPVHLELASM----TNRELMSSIVHQVLPYVDSLGLNEQEL 312 (478)
T ss_pred hCCCEEEEechhHHhhhhHHHHHHHHHHHHHHHhcCCCCCchhhhHhHH----HHHHHHHHHHHHhhhhccccCCCHHHH
Confidence 4789999999888776555543333333332 244444444311 112233455667899999999999999
Q ss_pred hhhcC
Q 024908 136 TFLTG 140 (260)
Q Consensus 136 ~~l~g 140 (260)
..|..
T Consensus 313 ~fL~q 317 (478)
T KOG4184|consen 313 LFLTQ 317 (478)
T ss_pred HHHHH
Confidence 87653
No 100
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=56.75 E-value=51 Score=26.51 Aligned_cols=65 Identities=12% Similarity=0.063 Sum_probs=42.6
Q ss_pred hhhcCccEEEEccccCCCchhHHHHHHHHHHHH-HCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEe----cCHH
Q 024908 59 NLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAK-ESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIK----VSDD 133 (260)
Q Consensus 59 ~~~~~~d~v~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~----~n~~ 133 (260)
......|.|.++|..-.. .+.+.+++++++ +.+.++++.|+.... +.+++|.++ +|..
T Consensus 37 ~~~~GTDaImIGGS~gvt---~~~~~~~v~~ik~~~~lPvilfP~~~~~--------------is~~aDavff~svLNS~ 99 (240)
T COG1646 37 AAEAGTDAIMIGGSDGVT---EENVDNVVEAIKERTDLPVILFPGSPSG--------------ISPYADAVFFPSVLNSD 99 (240)
T ss_pred HHHcCCCEEEECCccccc---HHHHHHHHHHHHhhcCCCEEEecCChhc--------------cCccCCeEEEEEEecCC
Confidence 445678999998854333 356777788888 889999999974332 334666654 4555
Q ss_pred HHhhhcC
Q 024908 134 EITFLTG 140 (260)
Q Consensus 134 E~~~l~g 140 (260)
+...+.|
T Consensus 100 n~~~i~g 106 (240)
T COG1646 100 NPYWIVG 106 (240)
T ss_pred Ccccccc
Confidence 5555444
No 101
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=55.88 E-value=43 Score=27.38 Aligned_cols=100 Identities=16% Similarity=0.225 Sum_probs=62.6
Q ss_pred hhhhcCccEEEEccccCCC-------------chhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhh
Q 024908 58 KNLIKQGSIFHYGSISLIA-------------EPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQ 124 (260)
Q Consensus 58 ~~~~~~~d~v~~~~~~~~~-------------~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~ 124 (260)
...++++++++.+|+.+.- =...|.+..+++.+.+.+.+|.+==+ .+. ..++....+....+.
T Consensus 59 ~~~i~~A~li~pDG~gvV~~ar~~~g~~~~~rv~G~Dl~~~Ll~~a~~~~~~vfllGg-kp~---V~~~a~~~l~~~~p~ 134 (253)
T COG1922 59 REILNQADLILPDGIGVVRAARRLLGQPLPERVAGTDLVEALLKRAAEEGKRVFLLGG-KPG---VAEQAAAKLRAKYPG 134 (253)
T ss_pred HHHHhhcCEEccCchhHHHHHHHHhCccCcccCChHHHHHHHHHHhCccCceEEEecC-CHH---HHHHHHHHHHHHCCC
Confidence 3677889999888765511 12457888889998888887765321 111 133445555555665
Q ss_pred CCEEecCHHHHhhhcCCCCCCchHHHHHHhcCCCCeEEEEecCC
Q 024908 125 ADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNLKLLIVTEGS 168 (260)
Q Consensus 125 ~dvl~~n~~E~~~l~g~~~~~~~~~~~~~l~~~g~~~vivt~G~ 168 (260)
.+++-... |-.++++.....+.+.+.++..++|-+|.
T Consensus 135 l~ivg~h~-------GYf~~~e~~~i~~~I~~s~pdil~VgmG~ 171 (253)
T COG1922 135 LKIVGSHD-------GYFDPEEEEAIVERIAASGPDILLVGMGV 171 (253)
T ss_pred ceEEEecC-------CCCChhhHHHHHHHHHhcCCCEEEEeCCC
Confidence 66665543 32233333346678888899999998886
No 102
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=53.87 E-value=11 Score=33.56 Aligned_cols=30 Identities=27% Similarity=0.412 Sum_probs=21.8
Q ss_pred eeeecCccc-ccccCCCCchHHHHHHHHHHH
Q 024908 179 KGRVPGVKT-KAVDTTGAGDSFVSGILNCLA 208 (260)
Q Consensus 179 ~~~~~~~~~-~~vdt~GaGDaf~Ag~~~~l~ 208 (260)
...+|..-+ +++.|+|-||+++||-..++.
T Consensus 417 ~~~iPt~~v~~P~sTVGlGDtisa~af~~~l 447 (453)
T PRK14039 417 VCILPTLVSKSPVTTVGLGDTLTAGTFLRLL 447 (453)
T ss_pred EEEechhhccCCccccccCccccHHHHHHHH
Confidence 344455434 799999999999988766654
No 103
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=52.94 E-value=48 Score=27.18 Aligned_cols=147 Identities=14% Similarity=0.115 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCH--------HHHHHHHHHHh-hhCCEEecCHHHHhhhcCCCCCCchHH
Q 024908 79 CRSTQLAAMNLAKESGSILSYDPNLRLPLWPSE--------EAAREGIMSIW-DQADIIKVSDDEITFLTGGDDHNDDNV 149 (260)
Q Consensus 79 ~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~--------~~~~~~~~~~l-~~~dvl~~n~~E~~~l~g~~~~~~~~~ 149 (260)
-...+.++...|+..+++.+++|-....--.+. .+....+..+. +.+|++|+-.-= .+....++...
T Consensus 145 k~a~ierigsec~aedi~f~lE~ltyd~~~~d~~eyak~kp~kV~~a~k~fsd~GadvlKvevPv----yveGe~~ea~~ 220 (306)
T COG3684 145 KLAYIERIGSECHAEDLPFFLEPLTYDPRIGDKEEYAKRKPQKVIEAMKEFSDSGADVLKVEVPV----YVEGEQEEAAA 220 (306)
T ss_pred HHHHHHHHHHHhhhcCCceeEeeeecCCCCCChHHHHhhchHHHHHHHHHhccCCCceEEeecce----eccCccHHHHH
Confidence 345566666778889998888762221111111 11122222222 368888864321 12222233333
Q ss_pred HHHHhcC-CCCeEEEEecCCCceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCcccccHHHHHHHHHHHH
Q 024908 150 VLEKLFH-PNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKDENRLREALLFAN 228 (260)
Q Consensus 150 ~~~~l~~-~g~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~ 228 (260)
..+++.. ...++++.+.|-..-+ | ...+.+....|| .|+++|.+- +..++..|-
T Consensus 221 ~f~~~~~~~~lP~i~LSAGV~~kl-F---------~~tv~fA~eaGA-----sGvL~GRAt----------Wa~~v~~g~ 275 (306)
T COG3684 221 AFQRQNDHINLPWIYLSAGVSAKL-F---------QRTVRFAMEAGA-----SGVLAGRAT----------WAGVVEQGE 275 (306)
T ss_pred HHHHhhcCCCCCeEEEecCccHHH-h---------HHHHHHHHHcCC-----ceeEechhh----------hhcccccCc
Confidence 3344443 4678888887642221 1 123466777888 677777654 567777888
Q ss_pred HHhhHHhhhcCCCCCCCCHHHHHHHHhhcc
Q 024908 229 ACGALTVTERGAIPALPTKEAALKLLHTVA 258 (260)
Q Consensus 229 ~~Aa~~~~~~g~~~~~~~~~~l~~~~~~~~ 258 (260)
-++...+...| .|...+|.+.+.+..
T Consensus 276 d~~re~Lrt~g----~~ni~eL~~vlde~a 301 (306)
T COG3684 276 DAAREWLRTVG----FPNLDELNKVLDETA 301 (306)
T ss_pred HHHHHHHHhhc----cccHHHHHHHHHHhh
Confidence 88888888875 468888888877643
No 104
>PF13808 DDE_Tnp_1_assoc: DDE_Tnp_1-associated
Probab=51.34 E-value=71 Score=21.32 Aligned_cols=56 Identities=16% Similarity=0.245 Sum_probs=45.9
Q ss_pred chHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHhhHHhhhcCCCCCCCCHHHHHHHHhhcc
Q 024908 196 GDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVTERGAIPALPTKEAALKLLHTVA 258 (260)
Q Consensus 196 GDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~~~~~g~~~~~~~~~~l~~~~~~~~ 258 (260)
.|..+-++++-++...+ +.+...+|...-..--+..|...+.|+...+.+.+..+.
T Consensus 22 ~~iL~i~~~a~l~G~~~-------~~~i~~~~~~~~~~l~~~l~~~~~~PS~~Ti~rvl~~ld 77 (90)
T PF13808_consen 22 ADILLIALCAVLCGADS-------WREIAEWARAHEEWLRKRLGLPRGVPSHDTIRRVLSRLD 77 (90)
T ss_pred HHHHHHHHHHHHHcccc-------HHHHHHHHHHhHHHHHHhcCCCCCCCcHHHHHHHHHHCC
Confidence 56677777777766666 999999999988888888888788999999999887654
No 105
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=49.34 E-value=11 Score=33.33 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=20.4
Q ss_pred eeeecCccc-ccccCCCCchHHHHHHHHHH
Q 024908 179 KGRVPGVKT-KAVDTTGAGDSFVSGILNCL 207 (260)
Q Consensus 179 ~~~~~~~~~-~~vdt~GaGDaf~Ag~~~~l 207 (260)
...+|..-+ +++.|+|-||+|+||-..++
T Consensus 410 v~~vPs~~v~~P~sTVGLGDtissgaF~~~ 439 (446)
T TIGR02045 410 AVLIPSRLVENPKSTVGLGDTISTGAFVSY 439 (446)
T ss_pred EEEechhhcCCCcceeccCcccchhHHHHH
Confidence 444555444 69999999999987755443
No 106
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=49.26 E-value=1.5e+02 Score=24.41 Aligned_cols=97 Identities=14% Similarity=0.221 Sum_probs=55.0
Q ss_pred CCceEEEEEEccCCceeEEEeeCCcccccccccccchhhhcCccEEEEccccC------CCchh-HHHHHHHHHHHHHCC
Q 024908 22 ARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISL------IAEPC-RSTQLAAMNLAKESG 94 (260)
Q Consensus 22 ~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~------~~~~~-~~~~~~~~~~a~~~~ 94 (260)
.++|..+.+.-.+|+.++++..+ .......+.+.+..-.+.+++.++|-+. ..+.+ ...+..+-+.+.+.+
T Consensus 162 skLGyVl~v~V~dg~~~i~faSD--vqGp~~~~~l~~i~e~~P~v~ii~GPpty~lg~r~~~~~~E~~irNl~~ii~~~~ 239 (304)
T COG2248 162 SKLGYVLMVAVTDGKSSIVFASD--VQGPINDEALEFILEKRPDVLIIGGPPTYLLGYRVGPKSLEKGIRNLERIIEETN 239 (304)
T ss_pred cccceEEEEEEecCCeEEEEccc--ccCCCccHHHHHHHhcCCCEEEecCCchhHhhhhcChHHHHHHHHHHHHHHHhCc
Confidence 56777777766788888877522 2222444555444446889999988654 23222 233444444556666
Q ss_pred CeEEEcCCCCCCCCCCHHHHHHHHHHHhhhC
Q 024908 95 SILSYDPNLRLPLWPSEEAAREGIMSIWDQA 125 (260)
Q Consensus 95 ~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~ 125 (260)
..+++|=..-. ...+++.++++...+
T Consensus 240 ~~lViDHHllR-----D~~y~e~l~~l~~~~ 265 (304)
T COG2248 240 ATLVIDHHLLR-----DKNYREFLEELFERA 265 (304)
T ss_pred ceEEEeehhhc-----CCCHHHHHHHHHhhH
Confidence 78888853111 223455555555444
No 107
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=48.68 E-value=20 Score=20.87 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=24.3
Q ss_pred ecCHHHHhhhcCCCCCCchHHHHHHhcCCCCeEEEEe
Q 024908 129 KVSDDEITFLTGGDDHNDDNVVLEKLFHPNLKLLIVT 165 (260)
Q Consensus 129 ~~n~~E~~~l~g~~~~~~~~~~~~~l~~~g~~~vivt 165 (260)
+++.+|+..|+|...... .++.|.+.|...++=.
T Consensus 2 fLT~~El~elTG~k~~~~---Q~~~L~~~Gi~~~~~~ 35 (47)
T PF13986_consen 2 FLTDEELQELTGYKRPSK---QIRWLRRNGIPFVVRA 35 (47)
T ss_pred CCCHHHHHHHHCCCCHHH---HHHHHHHCCCeeEECC
Confidence 568899999999875544 4467777887665433
No 108
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=47.34 E-value=74 Score=27.54 Aligned_cols=81 Identities=14% Similarity=0.066 Sum_probs=51.9
Q ss_pred chhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHh------hhc----------C
Q 024908 77 EPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEIT------FLT----------G 140 (260)
Q Consensus 77 ~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~------~l~----------g 140 (260)
+.+.+....+.+.+++.|++++-++.. . ..+..+.+.+|++++-..++. .+. |
T Consensus 165 g~~~e~l~~L~~~~~~~Gl~~~t~v~d-------~----~~~~~l~~~vd~lkI~s~~~~n~~LL~~~a~~gkPVilk~G 233 (360)
T PRK12595 165 GLGVEGLKILKQVADEYGLAVISEIVN-------P----ADVEVALDYVDVIQIGARNMQNFELLKAAGRVNKPVLLKRG 233 (360)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeeCC-------H----HHHHHHHHhCCeEEECcccccCHHHHHHHHccCCcEEEeCC
Confidence 345677888888899999999988852 1 122333445888886554433 221 2
Q ss_pred C-CCCCchHHHHHHhcCCCCeEEEEec-CC
Q 024908 141 G-DDHNDDNVVLEKLFHPNLKLLIVTE-GS 168 (260)
Q Consensus 141 ~-~~~~~~~~~~~~l~~~g~~~vivt~-G~ 168 (260)
. .+.++...+++.+...|.+.+++.. |.
T Consensus 234 ~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~ 263 (360)
T PRK12595 234 LSATIEEFIYAAEYIMSQGNGQIILCERGI 263 (360)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEECCcc
Confidence 2 2445666677888888887777774 54
No 109
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=46.73 E-value=59 Score=24.06 Aligned_cols=44 Identities=16% Similarity=0.302 Sum_probs=31.1
Q ss_pred ccchhhhcCccEEEEccccCCCchhHHHHHHHHHHHHHCCCeEEEcCC
Q 024908 55 ELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPN 102 (260)
Q Consensus 55 ~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~ 102 (260)
...+..+.++|++.+.|..+..+ .+..+++.+++....+++-|+
T Consensus 54 ~~~~~~l~~aD~viiTGsTlvN~----Ti~~iL~~~~~~~~vil~GpS 97 (147)
T PF04016_consen 54 EDAEEILPWADVVIITGSTLVNG----TIDDILELARNAREVILYGPS 97 (147)
T ss_dssp GGHHHHGGG-SEEEEECHHCCTT----THHHHHHHTTTSSEEEEESCC
T ss_pred HHHHHHHccCCEEEEEeeeeecC----CHHHHHHhCccCCeEEEEecC
Confidence 33457889999999988777665 566677778855556677775
No 110
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=45.11 E-value=94 Score=25.51 Aligned_cols=78 Identities=13% Similarity=0.038 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHh------hhc--C--------C
Q 024908 78 PCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEIT------FLT--G--------G 141 (260)
Q Consensus 78 ~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~------~l~--g--------~ 141 (260)
...+-+..+.+.+++.|++++.++.... ....+.+.+|++++-..+.. .+. | .
T Consensus 73 ~g~~gl~~l~~~~~~~Gl~~~t~~~d~~-----------~~~~l~~~~d~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~ 141 (260)
T TIGR01361 73 LGEEGLKLLRRAADEHGLPVVTEVMDPR-----------DVEIVAEYADILQIGARNMQNFELLKEVGKQGKPVLLKRGM 141 (260)
T ss_pred cHHHHHHHHHHHHHHhCCCEEEeeCChh-----------hHHHHHhhCCEEEECcccccCHHHHHHHhcCCCcEEEeCCC
Confidence 3466777788889999999998885221 12223345788886544432 221 2 1
Q ss_pred C-CCCchHHHHHHhcCCCCeEEEEec
Q 024908 142 D-DHNDDNVVLEKLFHPNLKLLIVTE 166 (260)
Q Consensus 142 ~-~~~~~~~~~~~l~~~g~~~vivt~ 166 (260)
. +.++...+++.+...|.+.+++..
T Consensus 142 ~~t~~e~~~Ave~i~~~Gn~~i~l~~ 167 (260)
T TIGR01361 142 GNTIEEWLYAAEYILSSGNGNVILCE 167 (260)
T ss_pred CCCHHHHHHHHHHHHHcCCCcEEEEE
Confidence 2 455666678888888887666653
No 111
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=44.40 E-value=63 Score=20.02 Aligned_cols=15 Identities=33% Similarity=0.282 Sum_probs=12.8
Q ss_pred chHHHHHHHHHHHhc
Q 024908 196 GDSFVSGILNCLAAD 210 (260)
Q Consensus 196 GDaf~Ag~~~~l~~g 210 (260)
=|+|.+|+.+++.+-
T Consensus 3 iDaf~vg~~~g~~~~ 17 (67)
T PF02659_consen 3 IDAFAVGISYGLRGI 17 (67)
T ss_pred HHHHHHHHHHHHHcC
Confidence 399999999999843
No 112
>PRK15452 putative protease; Provisional
Probab=43.35 E-value=2.2e+02 Score=25.49 Aligned_cols=49 Identities=12% Similarity=0.002 Sum_probs=34.0
Q ss_pred cccchhhhcCccEEEEccccCC-----CchhHHHHHHHHHHHHHCCCeEEEcCC
Q 024908 54 SELDKNLIKQGSIFHYGSISLI-----AEPCRSTQLAAMNLAKESGSILSYDPN 102 (260)
Q Consensus 54 ~~~~~~~~~~~d~v~~~~~~~~-----~~~~~~~~~~~~~~a~~~~~~v~~d~~ 102 (260)
+.+....-..+|.||+++-.+. .+...+.+.+.++.|++.|+++.+-..
T Consensus 14 e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n 67 (443)
T PRK15452 14 KNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVN 67 (443)
T ss_pred HHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEec
Confidence 4444455568999999753221 234557788899999999999887654
No 113
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=43.32 E-value=69 Score=22.49 Aligned_cols=39 Identities=10% Similarity=0.039 Sum_probs=27.2
Q ss_pred chHHHHHHhcCCCCeEEEEecCCCceEEEecCceeeecC
Q 024908 146 DDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFKGRVPG 184 (260)
Q Consensus 146 ~~~~~~~~l~~~g~~~vivt~G~~G~~~~~~~~~~~~~~ 184 (260)
+...+++...++|++.+.+|.....-+....+....++.
T Consensus 62 ~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~~ 100 (128)
T cd05014 62 ELLNLLPHLKRRGAPIIAITGNPNSTLAKLSDVVLDLPV 100 (128)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCCCCchhhhCCEEEECCC
Confidence 445577888889999999998776665554554555543
No 114
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=41.59 E-value=1.3e+02 Score=24.23 Aligned_cols=50 Identities=10% Similarity=-0.046 Sum_probs=33.0
Q ss_pred cccccchhhhcCccEEEEccccCCCchhHHHHHHHHHHHHHCCCeEEEcCCCC
Q 024908 52 CESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLR 104 (260)
Q Consensus 52 ~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~ 104 (260)
..+.+.....+..|.|.++|..-.. .+.+.+++++.++.+.++++.|+..
T Consensus 21 ~~~~~~~~~~~gtdai~vGGS~~vt---~~~~~~~v~~ik~~~lPvilfp~~~ 70 (232)
T PRK04169 21 PDEALEAICESGTDAIIVGGSDGVT---EENVDELVKAIKEYDLPVILFPGNI 70 (232)
T ss_pred CHHHHHHHHhcCCCEEEEcCCCccc---hHHHHHHHHHHhcCCCCEEEeCCCc
Confidence 3333333344678999998854233 3566667777777889999998743
No 115
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=41.19 E-value=57 Score=21.98 Aligned_cols=40 Identities=15% Similarity=0.152 Sum_probs=28.6
Q ss_pred hhhhcCccEEEEccccCCCchhHHHHHHHHHHHHHCCCeEEEcC
Q 024908 58 KNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDP 101 (260)
Q Consensus 58 ~~~~~~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~ 101 (260)
+..++++|+|++ +.+-.+......+-+.|++.++++++--
T Consensus 43 ~~~i~~aD~VIv----~t~~vsH~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 43 PSKIKKADLVIV----FTDYVSHNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred HHhcCCCCEEEE----EeCCcChHHHHHHHHHHHHcCCcEEEEC
Confidence 467789998853 2223345677778888999999988754
No 116
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=40.24 E-value=1.2e+02 Score=21.23 Aligned_cols=76 Identities=20% Similarity=0.163 Sum_probs=45.5
Q ss_pred CceEEEEEEccCCc----eeEEEeeCCcccccccccccchhhhcCccEEEEc-cccCCCchhHHHHHHHHHHHHHCCCeE
Q 024908 23 RTALAFVTLRADGE----REFLFFRHPSADMLLCESELDKNLIKQGSIFHYG-SISLIAEPCRSTQLAAMNLAKESGSIL 97 (260)
Q Consensus 23 ~T~~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~v 97 (260)
++-..-+++.++|+ +.-+..+..+..+.+.++++..-+....+.++++ |..-+-.. ..+..+..++.++.+
T Consensus 17 k~f~~DIvi~~dG~v~rr~K~lskrK~GTSHkl~~eEle~~lee~~E~ivvGTG~~G~l~l----~~ea~e~~r~k~~~v 92 (121)
T COG1504 17 KDFEHDIVIRPDGKVERREKELSKRKYGTSHKLALEELEELLEEGPEVIVVGTGQSGMLEL----SEEAREFFRKKGCEV 92 (121)
T ss_pred EeccccEEEecCCceehhhhhhhhhhcCcccccCHHHHHHHHhcCCcEEEEecCceeEEEe----CHHHHHHHHhcCCeE
Confidence 34444455556665 3334445566667778777766666788888765 32222222 223455678888888
Q ss_pred EEcCC
Q 024908 98 SYDPN 102 (260)
Q Consensus 98 ~~d~~ 102 (260)
+.-|.
T Consensus 93 i~~pT 97 (121)
T COG1504 93 IELPT 97 (121)
T ss_pred EEeCC
Confidence 88875
No 117
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=38.99 E-value=1.1e+02 Score=20.91 Aligned_cols=61 Identities=5% Similarity=0.088 Sum_probs=34.2
Q ss_pred hcCccEEEEccccCCCchhHHHHHHHHHHHHHCC---CeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEe
Q 024908 61 IKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESG---SILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIK 129 (260)
Q Consensus 61 ~~~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~---~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~ 129 (260)
.+++|+++++...+..+--.+... .+..+++.+ .++++-=-. +....+.+.+..+.+|++.
T Consensus 34 ~e~AD~iiiNTC~V~~~Ae~k~~~-~i~~l~~~~~~~~~ivv~GC~-------aq~~~~~l~~~~p~vd~v~ 97 (98)
T PF00919_consen 34 PEEADVIIINTCTVRESAEQKSRN-RIRKLKKLKKPGAKIVVTGCM-------AQRYGEELKKEFPEVDLVV 97 (98)
T ss_pred cccCCEEEEEcCCCCcHHHHHHHH-HHHHHHHhcCCCCEEEEEeCc-------cccChHHHHhhCCCeEEEe
Confidence 368999999887776654444444 344444433 555543111 1122345556667777764
No 118
>COG4809 Archaeal ADP-dependent phosphofructokinase/glucokinase [Carbohydrate transport and metabolism]
Probab=38.22 E-value=2.8e+02 Score=24.42 Aligned_cols=78 Identities=8% Similarity=-0.014 Sum_probs=49.6
Q ss_pred hhcCccEEEEccccCCCc----hh-----HHHHHHHHHHHHH-CCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEe
Q 024908 60 LIKQGSIFHYGSISLIAE----PC-----RSTQLAAMNLAKE-SGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIK 129 (260)
Q Consensus 60 ~~~~~d~v~~~~~~~~~~----~~-----~~~~~~~~~~a~~-~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~ 129 (260)
..++.|...+||+....+ -+ .+-..+-++..++ .++++=++..... +.......+..+++.++=+=
T Consensus 222 i~~~vDgaiiSGyq~l~eey~dg~t~~~yle~s~e~i~~lk~~~~irvHlEfas~~----d~~irk~i~~~il~~v~SvG 297 (466)
T COG4809 222 IAKEVDGAIISGYQGLKEEYSDGSTYKYYLERSREDIKALKDRENIRVHLEFASIQ----DRKIRKEILTNILSIVYSVG 297 (466)
T ss_pred HhhhcceeeeechhhhhhhcCCCCcHHHHHHHHHHHHHHHhccccceEEEEecccc----cHHHHHHHHHHHHhhhhhcC
Confidence 445688889998876321 11 1222233444555 6777777765332 24455666777999999999
Q ss_pred cCHHHHhhhcCC
Q 024908 130 VSDDEITFLTGG 141 (260)
Q Consensus 130 ~n~~E~~~l~g~ 141 (260)
+|+.|...+...
T Consensus 298 ldE~ElA~vl~v 309 (466)
T COG4809 298 LDEVELANVLNV 309 (466)
T ss_pred CCHHHHHHHHHh
Confidence 999998876543
No 119
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=38.07 E-value=65 Score=28.28 Aligned_cols=50 Identities=16% Similarity=0.117 Sum_probs=29.4
Q ss_pred ccccccchhhhcCccEEEEccccC--CCchhHHHHHHHHHHHHHCCCeEEEc
Q 024908 51 LCESELDKNLIKQGSIFHYGSISL--IAEPCRSTQLAAMNLAKESGSILSYD 100 (260)
Q Consensus 51 ~~~~~~~~~~~~~~d~v~~~~~~~--~~~~~~~~~~~~~~~a~~~~~~v~~d 100 (260)
++..+++...-++.++|.+..-.. ..-.+++.+.++.+.|+++|..++.|
T Consensus 160 ~D~~~le~~~t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisD 211 (420)
T KOG0257|consen 160 LDPEELESKITEKTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISD 211 (420)
T ss_pred CChHHHHhhccCCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEh
Confidence 344444444555667666553222 23356677777777777777766666
No 120
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=38.00 E-value=2.6e+02 Score=23.87 Aligned_cols=151 Identities=10% Similarity=0.027 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHHHCCCeEEEcCCCCC-CCC-CC--------HHHHHHHHHHHhh---hCCEEec----CHHHHhhhcCC
Q 024908 79 CRSTQLAAMNLAKESGSILSYDPNLRL-PLW-PS--------EEAAREGIMSIWD---QADIIKV----SDDEITFLTGG 141 (260)
Q Consensus 79 ~~~~~~~~~~~a~~~~~~v~~d~~~~~-~~~-~~--------~~~~~~~~~~~l~---~~dvl~~----n~~E~~~l~g~ 141 (260)
..+.+.++-..|+..+++.++++-... ..- .. +......+.++-+ .+|++|+ |.+-.+- ++.
T Consensus 140 k~a~vervg~eC~a~dipf~lE~ltY~~~~~d~~~~~yak~kP~~V~~a~kefs~~~~gvDVlKvEvPvn~~~veG-~~~ 218 (324)
T PRK12399 140 KKAYIERIGSECVAEDIPFFLEILTYDEKIADNGSVEYAKVKPHKVNEAMKVFSKPRFGVDVLKVEVPVNMKYVEG-FAE 218 (324)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEeeccCcccccccHHHHhhChHHHHHHHHHhccCCCCCcEEEEecccccccccc-cCc
Confidence 345556666669999999888762211 110 00 2223334444432 6899997 2111100 111
Q ss_pred C----CCCchHHHHHHhcC-CCCeEEEEecCCCceEEEecCceeeecCcccccccCCCCchHHHHHHHHHHHhcCccccc
Q 024908 142 D----DHNDDNVVLEKLFH-PNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVDTTGAGDSFVSGILNCLAADQNLIKD 216 (260)
Q Consensus 142 ~----~~~~~~~~~~~l~~-~g~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~Ag~~~~l~~g~~~~~~ 216 (260)
. +.++..+..+.+.+ .+.++|+.+.|-.--.+. -..+..-..||+ ..|+++|.+-
T Consensus 219 ~e~~yt~~eA~~~f~~~~~~~~~P~i~LSaGV~~~~F~----------~~l~~A~~aGa~---fsGvL~GRAt------- 278 (324)
T PRK12399 219 GEVVYTKEEAAQHFKEQDAATHLPYIYLSAGVSAELFQ----------ETLVFAHEAGAK---FNGVLCGRAT------- 278 (324)
T ss_pred ccccccHHHHHHHHHHHhhccCCCEEEEcCCCCHHHHH----------HHHHHHHHcCCC---cceEEeehhh-------
Confidence 1 12222222333333 577788887765221110 012233334443 2356666544
Q ss_pred HHHHHHHHH----HHHHHhhHHhhhcCCCCCCCCHHHHHHHHhhc
Q 024908 217 ENRLREALL----FANACGALTVTERGAIPALPTKEAALKLLHTV 257 (260)
Q Consensus 217 ~~~~~~a~~----~a~~~Aa~~~~~~g~~~~~~~~~~l~~~~~~~ 257 (260)
+.+++. -+-.++...++..|- ...++|.+.+++.
T Consensus 279 ---W~~~v~~~~~~g~~~~~ewL~t~g~----~ni~~Ln~vl~~t 316 (324)
T PRK12399 279 ---WAGSVKVYIEQGEAAAREWLRTEGF----ENIDELNKVLDKT 316 (324)
T ss_pred ---hHhhhhhhhcCCHHHHHHHHHHHhH----HHHHHHHHHHHhc
Confidence 455554 566777777777753 4677777776543
No 121
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=36.43 E-value=1.2e+02 Score=24.08 Aligned_cols=33 Identities=15% Similarity=0.082 Sum_probs=14.9
Q ss_pred HHHHHHCCCCCCceEEc-CCCCceEEEEEEccCC
Q 024908 3 ANILKENNVDTSGVRYD-STARTALAFVTLRADG 35 (260)
Q Consensus 3 ~~~l~~~gi~~~~v~~~-~~~~T~~~~~~~~~~g 35 (260)
++.++..|.....+... ...+....++..|-+|
T Consensus 35 r~~~r~~g~~~~l~~r~~r~~~~~~lvvl~DvSG 68 (222)
T PF05762_consen 35 RASLRTGGEPLRLVRRRRRPRKPRRLVVLCDVSG 68 (222)
T ss_pred HHHHhcCCCcceeeccccccCCCccEEEEEeCCC
Confidence 44555556655544444 2223323444445444
No 122
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=36.32 E-value=1.4e+02 Score=23.90 Aligned_cols=63 Identities=17% Similarity=0.110 Sum_probs=41.8
Q ss_pred hCCEEecCHHHHhhhc---------CCC---CCCchHHHHHHhcCCCCeEEEEecCCCceEEEecCceeeecCccccccc
Q 024908 124 QADIIKVSDDEITFLT---------GGD---DHNDDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKEFKGRVPGVKTKAVD 191 (260)
Q Consensus 124 ~~dvl~~n~~E~~~l~---------g~~---~~~~~~~~~~~l~~~g~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vd 191 (260)
...+++|+.++-..+- |.- +.+.....+++|.++|++.||.-|-+-+.++...+ .+++++|
T Consensus 142 gievvvPdd~~q~~v~~iIy~El~~G~~~~~sr~~~~~ii~~l~~~Gae~vIlGCTEi~lll~~~d-------~~vP~~D 214 (230)
T COG1794 142 GIEVVVPDDDEQAEVNRIIYEELCQGIVKDASRELYLAVIERLAERGAEGVILGCTEIPLLLSQDD-------SSVPVFD 214 (230)
T ss_pred CceEecCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHcCCCEEEEeccchheeecCCc-------ccCcccc
Confidence 4799999988765421 111 23334557788888999999988888777766544 2345566
Q ss_pred CC
Q 024908 192 TT 193 (260)
Q Consensus 192 t~ 193 (260)
|+
T Consensus 215 tt 216 (230)
T COG1794 215 TT 216 (230)
T ss_pred cH
Confidence 54
No 123
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=35.90 E-value=2.5e+02 Score=23.19 Aligned_cols=72 Identities=21% Similarity=0.183 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEe-----cCHHHHhhhcCCCCCCchHHHHHHhc
Q 024908 81 STQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIK-----VSDDEITFLTGGDDHNDDNVVLEKLF 155 (260)
Q Consensus 81 ~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~-----~n~~E~~~l~g~~~~~~~~~~~~~l~ 155 (260)
+.+.++++.+++.|..+.++.+.... .+.+.++++..|++. .+.+.-..+.|.. .+.....++.|.
T Consensus 141 ~~l~~l~~~~k~~g~~~~i~TnG~~~--------~~~~~~ll~~~d~~~isl~~~~~~~~~~~~g~~-~~~vl~~i~~l~ 211 (295)
T TIGR02494 141 EFALALLQACHERGIHTAVETSGFTP--------WETIEKVLPYVDLFLFDIKHLDDERHKEVTGVD-NEPILENLEALA 211 (295)
T ss_pred HHHHHHHHHHHHcCCcEeeeCCCCCC--------HHHHHHHHhhCCEEEEeeccCChHHHHHHhCCC-hHHHHHHHHHHH
Confidence 45567889999999888888764321 234455666677654 3444445565643 223334456666
Q ss_pred CCCCeE
Q 024908 156 HPNLKL 161 (260)
Q Consensus 156 ~~g~~~ 161 (260)
+.+.+.
T Consensus 212 ~~~~~~ 217 (295)
T TIGR02494 212 AAGKNV 217 (295)
T ss_pred hCCCcE
Confidence 666544
No 124
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=34.28 E-value=2.3e+02 Score=24.51 Aligned_cols=77 Identities=13% Similarity=0.066 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHh------hhc--C--------CC-C
Q 024908 81 STQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEIT------FLT--G--------GD-D 143 (260)
Q Consensus 81 ~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~------~l~--g--------~~-~ 143 (260)
+.+..+.+.+++.|.+++-++.. ...++.+.+++|++++-..+++ ++. | .. +
T Consensus 152 ~gl~~L~~~~~e~Gl~~~tev~d-----------~~~v~~~~~~~d~lqIga~~~~n~~LL~~va~t~kPVllk~G~~~t 220 (352)
T PRK13396 152 SALELLAAAREATGLGIITEVMD-----------AADLEKIAEVADVIQVGARNMQNFSLLKKVGAQDKPVLLKRGMAAT 220 (352)
T ss_pred HHHHHHHHHHHHcCCcEEEeeCC-----------HHHHHHHHhhCCeEEECcccccCHHHHHHHHccCCeEEEeCCCCCC
Confidence 33343344445556666555531 1122334456888886544432 221 1 12 4
Q ss_pred CCchHHHHHHhcCCCCeEEEEe-cCC
Q 024908 144 HNDDNVVLEKLFHPNLKLLIVT-EGS 168 (260)
Q Consensus 144 ~~~~~~~~~~l~~~g~~~vivt-~G~ 168 (260)
.++...+++.+...|.+.|++. +|-
T Consensus 221 ~ee~~~A~e~i~~~Gn~~viL~erG~ 246 (352)
T PRK13396 221 IDEWLMAAEYILAAGNPNVILCERGI 246 (352)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEecCC
Confidence 5566667888888888665544 444
No 125
>TIGR03586 PseI pseudaminic acid synthase.
Probab=33.35 E-value=2e+02 Score=24.63 Aligned_cols=78 Identities=21% Similarity=0.135 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhh-CCEEecCHHHHh------hh----------cC
Q 024908 78 PCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQ-ADIIKVSDDEIT------FL----------TG 140 (260)
Q Consensus 78 ~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~-~dvl~~n~~E~~------~l----------~g 140 (260)
.+.+...++.+.|++.|+.++..|. +... .+.+ .+. ++++++-..|+. .+ +|
T Consensus 74 l~~e~~~~L~~~~~~~Gi~~~stpf-------d~~s-vd~l---~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvilstG 142 (327)
T TIGR03586 74 TPWEWHKELFERAKELGLTIFSSPF-------DETA-VDFL---ESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMSTG 142 (327)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEccC-------CHHH-HHHH---HHcCCCEEEECCccccCHHHHHHHHhcCCcEEEECC
Confidence 4567778899999999999988875 2221 2222 233 778886554432 21 13
Q ss_pred CCCCCchHHHHHHhcCCCCeEEEEec
Q 024908 141 GDDHNDDNVVLEKLFHPNLKLLIVTE 166 (260)
Q Consensus 141 ~~~~~~~~~~~~~l~~~g~~~vivt~ 166 (260)
..+.++...+++.+.+.|.+.+++-+
T Consensus 143 ~~t~~Ei~~Av~~i~~~g~~~i~Llh 168 (327)
T TIGR03586 143 IATLEEIQEAVEACREAGCKDLVLLK 168 (327)
T ss_pred CCCHHHHHHHHHHHHHCCCCcEEEEe
Confidence 33555666677778777775555443
No 126
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=32.89 E-value=1.7e+02 Score=23.41 Aligned_cols=42 Identities=7% Similarity=-0.029 Sum_probs=29.9
Q ss_pred hhcCccEEEEccccCCCchhHHHHHHHHHHHHHCCCeEEEcCCCC
Q 024908 60 LIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLR 104 (260)
Q Consensus 60 ~~~~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~ 104 (260)
.-+..|.+.++|..-.. .+.+.+++++.++...++++.|+..
T Consensus 24 ~~~gtdai~vGGS~~vt---~~~~~~~v~~ik~~~lPvilfp~~~ 65 (223)
T TIGR01768 24 AESGTDAILIGGSQGVT---YEKTDTLIEALRRYGLPIILFPSNP 65 (223)
T ss_pred HhcCCCEEEEcCCCccc---HHHHHHHHHHHhccCCCEEEeCCCc
Confidence 33567999998854233 3466667777888889999998643
No 127
>smart00642 Aamy Alpha-amylase domain.
Probab=31.24 E-value=60 Score=24.54 Aligned_cols=25 Identities=12% Similarity=0.062 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHCCCeEEEcCCCC
Q 024908 80 RSTQLAAMNLAKESGSILSYDPNLR 104 (260)
Q Consensus 80 ~~~~~~~~~~a~~~~~~v~~d~~~~ 104 (260)
.+....+++.|+++|++|++|....
T Consensus 69 ~~d~~~lv~~~h~~Gi~vilD~V~N 93 (166)
T smart00642 69 MEDFKELVDAAHARGIKVILDVVIN 93 (166)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCC
Confidence 3678889999999999999998543
No 128
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=30.86 E-value=1.8e+02 Score=21.98 Aligned_cols=21 Identities=10% Similarity=0.338 Sum_probs=13.3
Q ss_pred HHHHHHhcCCCCeEEEEecCC
Q 024908 148 NVVLEKLFHPNLKLLIVTEGS 168 (260)
Q Consensus 148 ~~~~~~l~~~g~~~vivt~G~ 168 (260)
..+++.+.+.++..|+|-+|.
T Consensus 91 ~~i~~~I~~~~pdiv~vglG~ 111 (172)
T PF03808_consen 91 EAIINRINASGPDIVFVGLGA 111 (172)
T ss_pred HHHHHHHHHcCCCEEEEECCC
Confidence 335556666677777777665
No 129
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=29.90 E-value=3.9e+02 Score=23.61 Aligned_cols=86 Identities=6% Similarity=-0.063 Sum_probs=48.5
Q ss_pred CccEEEEccccCCCchhHHHHHHHHHHHHHCCCeEEEc-CCCCCCCCCCHHHHHHHHHHHhhh-CCEEe-----cCHHHH
Q 024908 63 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYD-PNLRLPLWPSEEAAREGIMSIWDQ-ADIIK-----VSDDEI 135 (260)
Q Consensus 63 ~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d-~~~~~~~~~~~~~~~~~~~~~l~~-~dvl~-----~n~~E~ 135 (260)
..+.+.++|- ..+...+...++++.+++.++.+.+. .+.. .++ + .+.+.++.++ +|.+. .|.+-.
T Consensus 73 ~~ggVtisGG--Gepl~~~~l~eLl~~lk~~gi~taI~~TnG~-~l~-~----~e~~~~L~~~gld~v~iSvka~dpe~h 144 (404)
T TIGR03278 73 RDTKVTISGG--GDVSCYPELEELTKGLSDLGLPIHLGYTSGK-GFD-D----PEIAEFLIDNGVREVSFTVFATDPELR 144 (404)
T ss_pred CCCEEEEECC--cccccCHHHHHHHHHHHhCCCCEEEeCCCCc-ccC-C----HHHHHHHHHcCCCEEEEecccCCHHHH
Confidence 3456655432 22334467788999999999988876 4322 111 1 3344455554 56553 455556
Q ss_pred hhhcCCCCCCchHHHHHHhcC
Q 024908 136 TFLTGGDDHNDDNVVLEKLFH 156 (260)
Q Consensus 136 ~~l~g~~~~~~~~~~~~~l~~ 156 (260)
..+.|....+...+.++.|.+
T Consensus 145 ~kl~G~~~a~~ILe~L~~L~e 165 (404)
T TIGR03278 145 REWMKDPTPEASLQCLRRFCE 165 (404)
T ss_pred HHHhCCCCHHHHHHHHHHHHh
Confidence 667886654444444455554
No 130
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=29.61 E-value=1.5e+02 Score=25.27 Aligned_cols=49 Identities=18% Similarity=0.163 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHCCCeEE-EcCCCCCC-CCCCHHHHHHHHHHHhhhCCEEec
Q 024908 82 TQLAAMNLAKESGSILS-YDPNLRLP-LWPSEEAAREGIMSIWDQADIIKV 130 (260)
Q Consensus 82 ~~~~~~~~a~~~~~~v~-~d~~~~~~-~~~~~~~~~~~~~~~l~~~dvl~~ 130 (260)
+=..+.++++..|.+|+ +||..... .-.........+.++++.+|++++
T Consensus 153 IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~l 203 (324)
T COG0111 153 IGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTL 203 (324)
T ss_pred HHHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEE
Confidence 33456778899998864 78832221 100011123447889999999984
No 131
>PF11167 DUF2953: Protein of unknown function (DUF2953); InterPro: IPR021338 This family of proteins has no known function.
Probab=29.45 E-value=42 Score=19.78 Aligned_cols=19 Identities=42% Similarity=0.459 Sum_probs=16.3
Q ss_pred CCCCchHHHHHHHHHHHhc
Q 024908 192 TTGAGDSFVSGILNCLAAD 210 (260)
Q Consensus 192 t~GaGDaf~Ag~~~~l~~g 210 (260)
+.|.||+..-|+++|+...
T Consensus 2 ~~G~~Daa~Tgi~~G~l~~ 20 (53)
T PF11167_consen 2 TIGLGDAADTGILYGLLWA 20 (53)
T ss_pred eeeccCHHHHHHHHHHHHH
Confidence 3599999999999998764
No 132
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=29.35 E-value=2.9e+02 Score=21.95 Aligned_cols=96 Identities=16% Similarity=0.148 Sum_probs=56.4
Q ss_pred ccEEEEccccCCCchhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhh-CCEEecC-----HHHHhh
Q 024908 64 GSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQ-ADIIKVS-----DDEITF 137 (260)
Q Consensus 64 ~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~-~dvl~~n-----~~E~~~ 137 (260)
+|++=+.-. .+.+...++++.+++.+.+++..-+.....|+ .+.+...+...-.. +|++|+- ..+...
T Consensus 93 ~d~vDiEl~-----~~~~~~~~l~~~~~~~~~kvI~S~H~f~~tp~-~~~l~~~~~~~~~~gaDivKia~~a~~~~D~~~ 166 (228)
T TIGR01093 93 PDFVDIELF-----LPDDAVKELINIAKKGGTKIIMSYHDFQKTPS-WEEIVERLEKALSYGADIVKIAVMANSKEDVLT 166 (228)
T ss_pred CCEEEEEcc-----CCHHHHHHHHHHHHHCCCEEEEeccCCCCCCC-HHHHHHHHHHHHHhCCCEEEEEeccCCHHHHHH
Confidence 477644421 23456677778788888999887655444443 34455666666555 8999862 333333
Q ss_pred hcCCCCCCchHHHHHHhcC-CCCeEEEEecCCCceEEE
Q 024908 138 LTGGDDHNDDNVVLEKLFH-PNLKLLIVTEGSKGCRYY 174 (260)
Q Consensus 138 l~g~~~~~~~~~~~~~l~~-~g~~~vivt~G~~G~~~~ 174 (260)
+. .....+.+ ...+.+.+.+|..|.+.+
T Consensus 167 ll---------~~~~~~~~~~~~p~i~~~MG~~G~~SR 195 (228)
T TIGR01093 167 LL---------EITNKVDEHADVPLITMSMGDRGKISR 195 (228)
T ss_pred HH---------HHHHHHHhcCCCCEEEEeCCCCChhHh
Confidence 31 11122221 345778899999986543
No 133
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=29.30 E-value=3.6e+02 Score=23.01 Aligned_cols=80 Identities=10% Similarity=0.083 Sum_probs=46.1
Q ss_pred HHHHHHHCCCCCCceEEcCCC--CceEEEEEEccCCceeEEEeeCCcccccccccccchhhhcCccEEEEccccCCCchh
Q 024908 2 LANILKENNVDTSGVRYDSTA--RTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPC 79 (260)
Q Consensus 2 i~~~l~~~gi~~~~v~~~~~~--~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~ 79 (260)
+++.|++.+.+...++..... ..+..+.+ .|+ .+.-+.++...+++.|++.+.+
T Consensus 18 ~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f---~g~-------------~~~V~~l~~~~f~~vDia~fag-------- 73 (322)
T PRK06901 18 LLEALEQSDLEIEQISIVEIEPFGEEQGIRF---NNK-------------AVEQIAPEEVEWADFNYVFFAG-------- 73 (322)
T ss_pred HHHHHHhcCCchhheeecccccccCCCEEEE---CCE-------------EEEEEECCccCcccCCEEEEcC--------
Confidence 567888888887755544331 12221111 111 1333444455557899986632
Q ss_pred HHHHHHHHHHHHHCCCeEEEcCCCCCC
Q 024908 80 RSTQLAAMNLAKESGSILSYDPNLRLP 106 (260)
Q Consensus 80 ~~~~~~~~~~a~~~~~~v~~d~~~~~~ 106 (260)
.+...++...+.+.|+. ++|.++..+
T Consensus 74 ~~~s~~~ap~a~~aG~~-VIDnSsa~R 99 (322)
T PRK06901 74 KMAQAEHLAQAAEAGCI-VIDLYGICA 99 (322)
T ss_pred HHHHHHHHHHHHHCCCE-EEECChHhh
Confidence 35777788888898985 557654333
No 134
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=29.16 E-value=2.7e+02 Score=21.54 Aligned_cols=71 Identities=10% Similarity=-0.036 Sum_probs=41.5
Q ss_pred CccEEEEccccCCCchhHHHHHHHHHHHHHCCCeEEEcCCCCCC---CCCCHHHH-HHHHHH-HhhhCCEEecCHHHHhh
Q 024908 63 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLP---LWPSEEAA-REGIMS-IWDQADIIKVSDDEITF 137 (260)
Q Consensus 63 ~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~---~~~~~~~~-~~~~~~-~l~~~dvl~~n~~E~~~ 137 (260)
+.|++++-++.. ...+..++++.+..|.++++++..-.. -|....+. ...-+. ...++|.++.+..+.+.
T Consensus 92 ~~~ii~ilg~~~-----g~~~~~~~r~~~~~g~~v~vN~DGlEWkR~KW~~~~k~~lk~~E~~avk~ad~lIaDs~~I~~ 166 (185)
T PF09314_consen 92 KYDIILILGYGI-----GPFFLPFLRKLRKKGGKVVVNMDGLEWKRAKWGRPAKKYLKFSEKLAVKYADRLIADSKGIQD 166 (185)
T ss_pred cCCEEEEEcCCc-----cHHHHHHHHhhhhcCCcEEECCCcchhhhhhcCHHHHHHHHHHHHHHHHhCCEEEEcCHHHHH
Confidence 356887655431 224555777778889999999865442 24322221 112222 45789998887766555
Q ss_pred h
Q 024908 138 L 138 (260)
Q Consensus 138 l 138 (260)
.
T Consensus 167 y 167 (185)
T PF09314_consen 167 Y 167 (185)
T ss_pred H
Confidence 3
No 135
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=28.95 E-value=3.1e+02 Score=22.14 Aligned_cols=85 Identities=6% Similarity=0.030 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhh-CCEEecC-----HHHHhhhcCCCCCCchHHHHHH
Q 024908 80 RSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQ-ADIIKVS-----DDEITFLTGGDDHNDDNVVLEK 153 (260)
Q Consensus 80 ~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~-~dvl~~n-----~~E~~~l~g~~~~~~~~~~~~~ 153 (260)
.+...++++.+++.|.++++--+..... ++.+.....+...... +|++|+- ..+...+. .+...
T Consensus 111 ~~~~~~l~~~~~~~~~~vI~S~H~F~~T-P~~~~l~~~~~~m~~~gaDi~KiAv~~~~~~Dvl~Ll---------~~~~~ 180 (238)
T PRK13575 111 IEKHQRLITHLQQYNKEVVISHHNFEST-PPLDELKFIFFKMQKFNPEYVKLAVMPHNKNDVLNLL---------QAMST 180 (238)
T ss_pred hHHHHHHHHHHHHcCCEEEEecCCCCCC-CCHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHH---------HHHHH
Confidence 4567778888888899988855432221 1233445555555543 7898862 22333321 11112
Q ss_pred hcC-CCCeEEEEecCCCceEEE
Q 024908 154 LFH-PNLKLLIVTEGSKGCRYY 174 (260)
Q Consensus 154 l~~-~g~~~vivt~G~~G~~~~ 174 (260)
..+ ...+.+.+.+|..|.+.+
T Consensus 181 ~~~~~~~p~i~i~MG~~G~iSR 202 (238)
T PRK13575 181 FSDTMDCKVVGISMSKLGLISR 202 (238)
T ss_pred HHhccCCCEEEEeCCCCCchhh
Confidence 222 346788999999996543
No 136
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=28.93 E-value=92 Score=26.00 Aligned_cols=53 Identities=19% Similarity=0.107 Sum_probs=33.7
Q ss_pred ccccccccchhhh------cCccEEEEccccC---CCchhHHHHHHHHHHHHHCCCeEEEcC
Q 024908 49 MLLCESELDKNLI------KQGSIFHYGSISL---IAEPCRSTQLAAMNLAKESGSILSYDP 101 (260)
Q Consensus 49 ~~~~~~~~~~~~~------~~~d~v~~~~~~~---~~~~~~~~~~~~~~~a~~~~~~v~~d~ 101 (260)
..++++++....- .+..+|+++...- ....+.+.+.++.+.|+++|+++.+|=
T Consensus 104 G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDG 165 (290)
T PF01212_consen 104 GKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDG 165 (290)
T ss_dssp TBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEE
T ss_pred CCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEeh
Confidence 4577777764221 2355777765444 335678889999999999999999994
No 137
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=28.28 E-value=2.7e+02 Score=23.80 Aligned_cols=78 Identities=13% Similarity=0.073 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhh-CCEEecCHHHHhh------h----------cC
Q 024908 78 PCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQ-ADIIKVSDDEITF------L----------TG 140 (260)
Q Consensus 78 ~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~-~dvl~~n~~E~~~------l----------~g 140 (260)
.+.+....+.+.|++.|+.++-.|.. . ...+.+ .+. ++++++-..|+.. + +|
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~stpfd-------~-~svd~l---~~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilStG 141 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLSTPFD-------L-ESADFL---EDLGVPRFKIPSGEITNAPLLKKIARFGKPVILSTG 141 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCC-------H-HHHHHH---HhcCCCEEEECcccccCHHHHHHHHhcCCcEEEECC
Confidence 45678888999999999998888741 1 112222 234 7888865554432 1 13
Q ss_pred CCCCCchHHHHHHhcCCCCe---EEEEec
Q 024908 141 GDDHNDDNVVLEKLFHPNLK---LLIVTE 166 (260)
Q Consensus 141 ~~~~~~~~~~~~~l~~~g~~---~vivt~ 166 (260)
..+.++...+++.+.+.|.+ .+++-|
T Consensus 142 matl~Ei~~Av~~i~~~G~~~~~i~llhC 170 (329)
T TIGR03569 142 MATLEEIEAAVGVLRDAGTPDSNITLLHC 170 (329)
T ss_pred CCCHHHHHHHHHHHHHcCCCcCcEEEEEE
Confidence 33455666677777777765 445444
No 138
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=28.13 E-value=41 Score=26.11 Aligned_cols=48 Identities=19% Similarity=0.394 Sum_probs=38.6
Q ss_pred cccCCCCchHHHHHHHHHH-HhcCcccccHHHHHHHHHHHHHHhhHHhhhcCCCCC
Q 024908 189 AVDTTGAGDSFVSGILNCL-AADQNLIKDENRLREALLFANACGALTVTERGAIPA 243 (260)
Q Consensus 189 ~vdt~GaGDaf~Ag~~~~l-~~g~~~~~~~~~~~~a~~~a~~~Aa~~~~~~g~~~~ 243 (260)
+.---|.|-+|.=||+-.- -.++. +++|++|=-.+-++.+.+-|...+
T Consensus 143 ~~aIgGSGStfIYGf~D~~~r~nMt-------~EE~~~fvk~Av~lAi~rDGsSGG 191 (224)
T KOG0174|consen 143 PFAIGGSGSTFIYGFCDANWRPNMT-------LEECVRFVKNAVSLAIERDGSSGG 191 (224)
T ss_pred ceeeccCCceeeeeeehhhcCCCCC-------HHHHHHHHHHHHHHHHhccCCCCC
Confidence 4445688999988888754 44788 999999999999999999887754
No 139
>TIGR00444 mazG MazG family protein. This family of prokaryotic proteins has no known function. It includes the uncharacterized protein MazG in E. coli.
Probab=27.48 E-value=2.6e+02 Score=22.80 Aligned_cols=56 Identities=21% Similarity=0.066 Sum_probs=40.3
Q ss_pred CchHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHhhH-------HhhhcCCCCCCCCHHHHHHHHhhc
Q 024908 195 AGDSFVSGILNCLAADQNLIKDENRLREALLFANACGAL-------TVTERGAIPALPTKEAALKLLHTV 257 (260)
Q Consensus 195 aGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~-------~~~~~g~~~~~~~~~~l~~~~~~~ 257 (260)
.||.+.+-+..+...|.+ ++.|++.++.-=.. .+...|....-.+.+++++..++.
T Consensus 185 lGDlLFalvnlAr~~giD-------pE~ALr~a~~KF~~Rf~~~E~~~~~~g~~~~~~slee~~~lW~~a 247 (248)
T TIGR00444 185 MGDLLFATVNLARHLKTD-------AEIALQKANEKFERRFREVERIVAARGLELTGVDLEEMEELWQQV 247 (248)
T ss_pred HHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHHHHHc
Confidence 599999999999999999 99999876542222 233445444556888888877664
No 140
>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.
Probab=27.41 E-value=37 Score=29.32 Aligned_cols=21 Identities=29% Similarity=0.204 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHCCCeEEEcCC
Q 024908 82 TQLAAMNLAKESGSILSYDPN 102 (260)
Q Consensus 82 ~~~~~~~~a~~~~~~v~~d~~ 102 (260)
...++.+.++++++++++|.+
T Consensus 158 ~~~el~~la~~~~lp~i~Dlg 178 (367)
T PF03841_consen 158 SLEELAELAKEHGLPVIVDLG 178 (367)
T ss_dssp ---HHHHHHHHHT--EEEE-T
T ss_pred cHHHHHHHHhhcCCcEEEECC
Confidence 566788889999999999986
No 141
>PF04252 RNA_Me_trans: Predicted SAM-dependent RNA methyltransferase; InterPro: IPR007364 This family of proteins are predicted to be alpha/beta-knot SAM-dependent RNA methyltransferases [].
Probab=27.36 E-value=83 Score=24.60 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=27.4
Q ss_pred CCcccccccccccchhhhcCccEEEEccccCCCchhHHHHHHHHH
Q 024908 44 HPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMN 88 (260)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~~~~ 88 (260)
++.+...+++++. +++|++++||+ +.+..|++-..++.+
T Consensus 69 DP~A~~~L~PeD~-----~~fd~fvfGGI-LGD~PPrdRT~eLr~ 107 (196)
T PF04252_consen 69 DPAAEKELSPEDG-----EKFDYFVFGGI-LGDHPPRDRTSELRT 107 (196)
T ss_pred CCCCCCCCCcccc-----CcccEEEECcc-cCCCCCCCchHHHHh
Confidence 3566655665555 68999999997 666667777776654
No 142
>PRK10534 L-threonine aldolase; Provisional
Probab=27.20 E-value=1.1e+02 Score=25.66 Aligned_cols=37 Identities=14% Similarity=0.024 Sum_probs=18.0
Q ss_pred ccEEEEccccCCCchhHHHHHHHHHHHHHCCCeEEEc
Q 024908 64 GSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYD 100 (260)
Q Consensus 64 ~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d 100 (260)
.+++++.+.+...-.+.+.+.++++.++++++.+++|
T Consensus 130 ~~lv~l~np~~G~v~~~~~l~~i~~~~~~~~~~lvvD 166 (333)
T PRK10534 130 TRLLSLENTHNGKVLPREYLKQAWEFTRERNLALHVD 166 (333)
T ss_pred ceEEEEecCCCCeecCHHHHHHHHHHHHHcCCeEEee
Confidence 3455544332222234445555555555555555555
No 143
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=27.11 E-value=2.3e+02 Score=22.12 Aligned_cols=52 Identities=12% Similarity=0.060 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCC
Q 024908 82 TQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGG 141 (260)
Q Consensus 82 ~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~ 141 (260)
.....++..++.|+.+++|=.... ... ...+.. + .+|+++++......+...
T Consensus 133 ~~~~~~~~l~~~G~~l~ld~~g~~-----~~~-~~~l~~-~-~~d~iKld~~~~~~~~~~ 184 (240)
T cd01948 133 EALATLRRLRALGVRIALDDFGTG-----YSS-LSYLKR-L-PVDYLKIDRSFVRDIETD 184 (240)
T ss_pred HHHHHHHHHHHCCCeEEEeCCCCc-----Hhh-HHHHHh-C-CCCEEEECHHHHHhHhcC
Confidence 356677888999999998732111 111 112221 1 489999999888776554
No 144
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=26.81 E-value=1.9e+02 Score=23.02 Aligned_cols=73 Identities=15% Similarity=0.151 Sum_probs=45.3
Q ss_pred hhhcCccEEEEccccCCCchhHHHHHHHHHHHHH-CCCeEEEcCCCCCC---------CCCCHHHHHHHHHHHhhhCCEE
Q 024908 59 NLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKE-SGSILSYDPNLRLP---------LWPSEEAAREGIMSIWDQADII 128 (260)
Q Consensus 59 ~~~~~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~v~~d~~~~~~---------~~~~~~~~~~~~~~~l~~~dvl 128 (260)
+..+.+|+|++. .|.+.+..+++..++ .+-++++|+..+-. ..++.....+.+.++++...++
T Consensus 56 dA~~~aDVVvLA-------VP~~a~~~v~~~l~~~~~~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVV 128 (211)
T COG2085 56 DAAALADVVVLA-------VPFEAIPDVLAELRDALGGKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVV 128 (211)
T ss_pred HHHhcCCEEEEe-------ccHHHHHhHHHHHHHHhCCeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchh
Confidence 456789998654 234556666666554 45578999876521 1122344567788888888888
Q ss_pred e-cCHHHHhhh
Q 024908 129 K-VSDDEITFL 138 (260)
Q Consensus 129 ~-~n~~E~~~l 138 (260)
+ +|.-.+..|
T Consensus 129 kAFn~i~a~~l 139 (211)
T COG2085 129 KAFNTIPAAVL 139 (211)
T ss_pred hhhcccCHHHh
Confidence 7 555545444
No 145
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=26.54 E-value=1.7e+02 Score=20.07 Aligned_cols=41 Identities=12% Similarity=0.041 Sum_probs=24.2
Q ss_pred HHHHHHHCCCCCCceEEcCCCCceEEEEEEccCCceeEEEe
Q 024908 2 LANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFF 42 (260)
Q Consensus 2 i~~~l~~~gi~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~ 42 (260)
+.+.|++.|+.+...........+..+.+.|++|.+.-++.
T Consensus 78 ~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 118 (122)
T cd07265 78 LEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYA 118 (122)
T ss_pred HHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEE
Confidence 35678889988542211112223556777889888765543
No 146
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=26.32 E-value=2.7e+02 Score=20.55 Aligned_cols=47 Identities=17% Similarity=0.146 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHH
Q 024908 78 PCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDD 133 (260)
Q Consensus 78 ~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~ 133 (260)
...+.+.++++.+++.|..+.++.+... .+...++++.+|+++...-
T Consensus 72 l~~~~l~~ll~~lk~~Gl~i~l~Tg~~~---------~~~~~~il~~iD~l~~g~y 118 (147)
T TIGR02826 72 WNREALLSLLKIFKEKGLKTCLYTGLEP---------KDIPLELVQHLDYLKTGRW 118 (147)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECCCCC---------HHHHHHHHHhCCEEEEChH
Confidence 4456788899999999999999875321 2245567889999998774
No 147
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=25.92 E-value=2.3e+02 Score=23.28 Aligned_cols=70 Identities=13% Similarity=0.095 Sum_probs=43.0
Q ss_pred cccchhhhcCccEEEEccccCCCchhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHH
Q 024908 54 SELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDD 133 (260)
Q Consensus 54 ~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~ 133 (260)
-++.......+|.|.+-.- -.+.+.+.++++.|++.|.-++++.+ +.......+. -.++++=+|..
T Consensus 122 ~QI~eA~~~GADaVLLI~~----~L~~~~l~~l~~~a~~lGle~lVEVh-------~~~El~~al~---~~a~iiGINnR 187 (254)
T PF00218_consen 122 YQIYEARAAGADAVLLIAA----ILSDDQLEELLELAHSLGLEALVEVH-------NEEELERALE---AGADIIGINNR 187 (254)
T ss_dssp HHHHHHHHTT-SEEEEEGG----GSGHHHHHHHHHHHHHTT-EEEEEES-------SHHHHHHHHH---TT-SEEEEESB
T ss_pred HHHHHHHHcCCCEeehhHH----hCCHHHHHHHHHHHHHcCCCeEEEEC-------CHHHHHHHHH---cCCCEEEEeCc
Confidence 3343456668888743211 12346678899999999999999986 3444443332 36889889876
Q ss_pred HHhh
Q 024908 134 EITF 137 (260)
Q Consensus 134 E~~~ 137 (260)
++..
T Consensus 188 dL~t 191 (254)
T PF00218_consen 188 DLKT 191 (254)
T ss_dssp CTTT
T ss_pred cccC
Confidence 5554
No 148
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=25.38 E-value=90 Score=25.54 Aligned_cols=24 Identities=13% Similarity=0.007 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHCCCeEEEcCCC
Q 024908 80 RSTQLAAMNLAKESGSILSYDPNL 103 (260)
Q Consensus 80 ~~~~~~~~~~a~~~~~~v~~d~~~ 103 (260)
.+...++++.|+++|++|++|...
T Consensus 51 ~~d~~~Lv~~~h~~gi~VilD~V~ 74 (316)
T PF00128_consen 51 MEDFKELVDAAHKRGIKVILDVVP 74 (316)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEET
T ss_pred hhhhhhhhhccccccceEEEeeec
Confidence 467888999999999999999844
No 149
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=24.83 E-value=2.4e+02 Score=25.16 Aligned_cols=82 Identities=17% Similarity=0.138 Sum_probs=47.6
Q ss_pred chhHHHHHHHHHHHHHCCC-eEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCCCCCchHHHHHHhc
Q 024908 77 EPCRSTQLAAMNLAKESGS-ILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLF 155 (260)
Q Consensus 77 ~~~~~~~~~~~~~a~~~~~-~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~~~~~~~~~~~~l~ 155 (260)
..|.++..+.++.+++.+. .+++|...|.... ...+.++-.--+++.|++ .-.....-...++...++.+.
T Consensus 165 ~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~id------e~Lm~El~~Ik~~~~P~E--~llVvDam~GQdA~~~A~aF~ 236 (451)
T COG0541 165 KDPVEIAKAALEKAKEEGYDVVIVDTAGRLHID------EELMDELKEIKEVINPDE--TLLVVDAMIGQDAVNTAKAFN 236 (451)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccccc------HHHHHHHHHHHhhcCCCe--EEEEEecccchHHHHHHHHHh
Confidence 3467888999999998763 4678999888752 333333333334444432 111112222223344566677
Q ss_pred C-CCCeEEEEec
Q 024908 156 H-PNLKLLIVTE 166 (260)
Q Consensus 156 ~-~g~~~vivt~ 166 (260)
+ .+..-||+|.
T Consensus 237 e~l~itGvIlTK 248 (451)
T COG0541 237 EALGITGVILTK 248 (451)
T ss_pred hhcCCceEEEEc
Confidence 5 6888899994
No 150
>PF04843 Herpes_teg_N: Herpesvirus tegument protein, N-terminal conserved region; InterPro: IPR006928 Herpesvirus UL36 encodes the largest herpes simplex virus protein, also designated VP1/2, which is a component of the virion tegument. The N-terminal domain, of approximately 500aa, encodes a ubiquitin-specific protease (USP) that belongs to MEROPS peptidase family C76 (UL36 deubiquitinylating peptidase, clan CA). It is conserved across the herpesviridae and accumulates as a cleavage product of UL36 during late viral replication []. The conservation of UL36-USP across all members of the herpesviridae and the absolute conservation of the active site residues imply that UL36-USP plays an important role the herpesvirus life cycle.
Probab=24.23 E-value=2e+02 Score=21.93 Aligned_cols=31 Identities=13% Similarity=0.105 Sum_probs=21.3
Q ss_pred HHHHhcCCCCeEEEEecCCCceEEEecCcee
Q 024908 150 VLEKLFHPNLKLLIVTEGSKGCRYYTKEFKG 180 (260)
Q Consensus 150 ~~~~l~~~g~~~vivt~G~~G~~~~~~~~~~ 180 (260)
+.....++.+..+++|.|..+..++..+..+
T Consensus 113 ~~~~~~~~~~~y~l~t~g~~~~av~~~~~~~ 143 (172)
T PF04843_consen 113 LLYAWYKRTPQYILVTIGALTIAVIRTGDRY 143 (172)
T ss_pred HHHHhccCCCcEEEEEECCceEEEEEeCCcE
Confidence 3344455667889999999987776555433
No 151
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=23.83 E-value=3e+02 Score=21.44 Aligned_cols=51 Identities=14% Similarity=0.139 Sum_probs=30.8
Q ss_pred HHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCC
Q 024908 83 QLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGG 141 (260)
Q Consensus 83 ~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~ 141 (260)
....++..++.|+.+++|=... .......+.. + .+|++|++..-...+...
T Consensus 135 ~~~~i~~l~~~G~~ialddfg~------~~~~~~~l~~-l-~~d~iKld~~~~~~~~~~ 185 (241)
T smart00052 135 AVATLQRLRELGVRIALDDFGT------GYSSLSYLKR-L-PVDLLKIDKSFVRDLQTD 185 (241)
T ss_pred HHHHHHHHHHCCCEEEEeCCCC------cHHHHHHHHh-C-CCCeEEECHHHHhhhccC
Confidence 3466778889999998874211 1111122221 2 489999998877665443
No 152
>PF14252 DUF4347: Domain of unknown function (DUF4347)
Probab=23.56 E-value=2.3e+02 Score=21.50 Aligned_cols=53 Identities=13% Similarity=0.187 Sum_probs=30.7
Q ss_pred HHHHHHHhhhCCEEecCHHHHhhhcCCCCCCchHHHHHHhcC-CCCeE-EEEecCCCceEEEecC
Q 024908 115 REGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFH-PNLKL-LIVTEGSKGCRYYTKE 177 (260)
Q Consensus 115 ~~~~~~~l~~~dvl~~n~~E~~~l~g~~~~~~~~~~~~~l~~-~g~~~-vivt~G~~G~~~~~~~ 177 (260)
...+..+.+.+.++.++..+ +...++.+.|.. .++.. -|+++|+.|.+.....
T Consensus 13 ~~L~~~l~~~~~v~~ld~~~----------d~~~qI~~~L~~~~~i~~lhivsHG~~G~l~LG~~ 67 (165)
T PF14252_consen 13 ESLLAGLPPGVEVVILDPSR----------DGLEQIAQALAGYQNIDALHIVSHGSPGALQLGNT 67 (165)
T ss_pred HHHHhcCcCCCEEEEEeCCC----------chHHHHHHHHhcCCCCceEEEEcCCCcceEEECCc
Confidence 44445555667777765431 122234444554 34555 4899999999887554
No 153
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=23.30 E-value=3.3e+02 Score=20.98 Aligned_cols=58 Identities=21% Similarity=0.181 Sum_probs=34.8
Q ss_pred cCccEEEEccccCCCchhHHHHHHHHHHHHHCCCeEEEcC-CCCCCCCCCHHHHHHHHHHHhh-hCCEEecCH
Q 024908 62 KQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDP-NLRLPLWPSEEAAREGIMSIWD-QADIIKVSD 132 (260)
Q Consensus 62 ~~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~-~~~~~~~~~~~~~~~~~~~~l~-~~dvl~~n~ 132 (260)
..+|++.+.... +.....++++.+++.|+++.++. ++.. ..+. .....+ .+|+++++.
T Consensus 75 ~Gad~i~vh~~~-----~~~~~~~~i~~~~~~g~~~~~~~~~~~t----~~~~----~~~~~~~g~d~v~~~p 134 (206)
T TIGR03128 75 AGADIVTVLGVA-----DDATIKGAVKAAKKHGKEVQVDLINVKD----KVKR----AKELKELGADYIGVHT 134 (206)
T ss_pred cCCCEEEEeccC-----CHHHHHHHHHHHHHcCCEEEEEecCCCC----hHHH----HHHHHHcCCCEEEEcC
Confidence 468887655432 12345678888999999999874 3211 1122 222233 789998753
No 154
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=23.27 E-value=1.4e+02 Score=25.42 Aligned_cols=13 Identities=15% Similarity=0.059 Sum_probs=6.2
Q ss_pred CCCCC---ceEEcCCC
Q 024908 10 NVDTS---GVRYDSTA 22 (260)
Q Consensus 10 gi~~~---~v~~~~~~ 22 (260)
|++++ .+.+.++.
T Consensus 54 g~~~~~~~~Iiit~Gs 69 (350)
T TIGR03537 54 GVKLDPDAQVLPSAGS 69 (350)
T ss_pred CCCCCCCCcEEEcCCh
Confidence 65443 45455443
No 155
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=23.22 E-value=2e+02 Score=25.41 Aligned_cols=51 Identities=18% Similarity=0.234 Sum_probs=32.6
Q ss_pred ccccccchhhhcCccEEEEccccCCCchhHHHHHHHHHHHHHCCCeEEEcCC
Q 024908 51 LCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPN 102 (260)
Q Consensus 51 ~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~ 102 (260)
+..+.+....-++.++|.++..+....... -+.++.+.|++.|..+++|-.
T Consensus 150 ~~~~~~~~~i~~~Tklvais~vSn~tG~~~-pv~~I~~la~~~ga~v~VDaa 200 (405)
T COG0520 150 LDLDALEKLITPKTKLVALSHVSNVTGTVN-PVKEIAELAHEHGALVLVDAA 200 (405)
T ss_pred cCHHHHHHhcCCCceEEEEECccccccccc-hHHHHHHHHHHcCCEEEEECc
Confidence 444444332224577887766555443222 377788999999999999974
No 156
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=22.88 E-value=4.1e+02 Score=22.82 Aligned_cols=74 Identities=8% Similarity=0.032 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHh------hhc--C--------CC-C
Q 024908 81 STQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEIT------FLT--G--------GD-D 143 (260)
Q Consensus 81 ~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~------~l~--g--------~~-~ 143 (260)
+-+..+.+.+++.|.+++-++.. ...+..+.+++|++++-..+.+ .+. | .. +
T Consensus 144 ~gL~~L~~~~~~~Gl~v~tev~d-----------~~~~~~l~~~vd~lqIgAr~~~N~~LL~~va~~~kPViLk~G~~~t 212 (335)
T PRK08673 144 EGLKLLAEAREETGLPIVTEVMD-----------PRDVELVAEYVDILQIGARNMQNFDLLKEVGKTNKPVLLKRGMSAT 212 (335)
T ss_pred HHHHHHHHHHHHcCCcEEEeeCC-----------HHHHHHHHHhCCeEEECcccccCHHHHHHHHcCCCcEEEeCCCCCC
Confidence 33444444466666666666541 1122233456888886544432 221 1 11 3
Q ss_pred CCchHHHHHHhcCCCCeEEEEe
Q 024908 144 HNDDNVVLEKLFHPNLKLLIVT 165 (260)
Q Consensus 144 ~~~~~~~~~~l~~~g~~~vivt 165 (260)
.++...+++.+...|.+.+++.
T Consensus 213 i~E~l~A~e~i~~~GN~~viL~ 234 (335)
T PRK08673 213 IEEWLMAAEYILAEGNPNVILC 234 (335)
T ss_pred HHHHHHHHHHHHHcCCCeEEEE
Confidence 4455567777777777665554
No 157
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=22.87 E-value=2e+02 Score=23.06 Aligned_cols=52 Identities=23% Similarity=0.354 Sum_probs=31.4
Q ss_pred cCccEEEEccccCCCchhHHHHHHHHHHHHHCCCe--EEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEe
Q 024908 62 KQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSI--LSYDPNLRLPLWPSEEAAREGIMSIWDQADIIK 129 (260)
Q Consensus 62 ~~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~~~--v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~ 129 (260)
.++|++-+. .+ ......++++..|+.|++ ++++|.-+ .+.+..+++.+|++.
T Consensus 83 agad~It~H-----~E-~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp----------~~~i~~~l~~vD~Vl 136 (220)
T COG0036 83 AGADIITFH-----AE-ATEHIHRTIQLIKELGVKAGLVLNPATP----------LEALEPVLDDVDLVL 136 (220)
T ss_pred hCCCEEEEE-----ec-cCcCHHHHHHHHHHcCCeEEEEECCCCC----------HHHHHHHHhhCCEEE
Confidence 357887332 11 223556688888999987 46666532 335556667777654
No 158
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=22.51 E-value=3.2e+02 Score=22.33 Aligned_cols=63 Identities=11% Similarity=0.076 Sum_probs=42.2
Q ss_pred hhhcCccEEEEccccCCCchhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHH
Q 024908 59 NLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEI 135 (260)
Q Consensus 59 ~~~~~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~ 135 (260)
.....+|++++....+ +.+.+.++++.+++.|..+++|.. +......... -.+|++-+|....
T Consensus 129 a~~~GAD~VlLi~~~l----~~~~l~~li~~a~~lGl~~lvevh-------~~~E~~~A~~---~gadiIgin~rdl 191 (260)
T PRK00278 129 ARAAGADAILLIVAAL----DDEQLKELLDYAHSLGLDVLVEVH-------DEEELERALK---LGAPLIGINNRNL 191 (260)
T ss_pred HHHcCCCEEEEEeccC----CHHHHHHHHHHHHHcCCeEEEEeC-------CHHHHHHHHH---cCCCEEEECCCCc
Confidence 4446789887655332 236888899999999999999986 3333333222 2789988885443
No 159
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=22.08 E-value=5.1e+02 Score=22.29 Aligned_cols=73 Identities=15% Similarity=0.076 Sum_probs=40.8
Q ss_pred cCCCCCCchHHHHHHhcCCCCeEEEEecCCCce-----------EEEecCc--eeeecCccc--c---cccCCCCchHHH
Q 024908 139 TGGDDHNDDNVVLEKLFHPNLKLLIVTEGSKGC-----------RYYTKEF--KGRVPGVKT--K---AVDTTGAGDSFV 200 (260)
Q Consensus 139 ~g~~~~~~~~~~~~~l~~~g~~~vivt~G~~G~-----------~~~~~~~--~~~~~~~~~--~---~vdt~GaGDaf~ 200 (260)
.|...++-....++.+...|.+..+|-+|.+|. +...+++ .+.+.|... + .-+-.|..=.-.
T Consensus 194 iGV~~p~~~~~~A~~l~~LG~~ralvV~G~~GlDE~~~~~~t~v~~l~~g~i~~~~l~pe~~Gl~~~~~~~l~~~~~~en 273 (338)
T COG0547 194 IGVYHPELVELLAEALRLLGVERALVVHGLEGLDEVTPTGTTLVAELKDGEIREYTLTPEDFGLERAPLEDLPGGDPEEN 273 (338)
T ss_pred EEEeCHHHHHHHHHHHHHhCcceEEEEECCCCcccccCCCCceEEEEcCCceEEEEeCHHhcCCCCCchhhcCCCCHHHH
Confidence 344444444456677888898887777787653 2233332 233333221 2 234455544456
Q ss_pred HHHHHHHHhcC
Q 024908 201 SGILNCLAADQ 211 (260)
Q Consensus 201 Ag~~~~l~~g~ 211 (260)
|.++-..+.|.
T Consensus 274 a~~~~~vL~G~ 284 (338)
T COG0547 274 AEILRAVLAGE 284 (338)
T ss_pred HHHHHHHHCCC
Confidence 77788888884
No 160
>PLN02271 serine hydroxymethyltransferase
Probab=21.90 E-value=1.4e+02 Score=27.73 Aligned_cols=50 Identities=20% Similarity=0.129 Sum_probs=32.2
Q ss_pred ccccccch-hhhcCccEEEEccccCCCchhHHHHHHHHHHHHHCCCeEEEcCCC
Q 024908 51 LCESELDK-NLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNL 103 (260)
Q Consensus 51 ~~~~~~~~-~~~~~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~ 103 (260)
++.+.+.. ....+.++|++++.......+. ..+.+.|++.|+.+++|...
T Consensus 285 IDyd~lek~a~~~rPKLII~g~Saypr~~D~---~~i~eIAdevGA~LmvD~AH 335 (586)
T PLN02271 285 IDYDKLEEKALDFRPKILICGGSSYPREWDY---ARFRQIADKCGAVLMCDMAH 335 (586)
T ss_pred cCHHHHHHHhhhcCCeEEEECchhccCcCCH---HHHHHHHHHcCCEEEEECcc
Confidence 44455543 3335788888887555444433 34566788899999999753
No 161
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=21.79 E-value=2.2e+02 Score=22.78 Aligned_cols=42 Identities=5% Similarity=-0.041 Sum_probs=27.4
Q ss_pred cCccEEEEccccCCCchhHHHHHHHHHHHHHCCCeEEEcCCCCC
Q 024908 62 KQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRL 105 (260)
Q Consensus 62 ~~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~ 105 (260)
+..|.+.++|..-.. ...+-+..++++.++ ..++++.|+...
T Consensus 24 ~gtdai~vGGS~~v~-~~~~~~~~~ik~~~~-~~Pvilfp~~~~ 65 (219)
T cd02812 24 SGTDAIMVGGSDGVS-STLDNVVRLIKRIRR-PVPVILFPSNPE 65 (219)
T ss_pred cCCCEEEECCccchh-hhHHHHHHHHHHhcC-CCCEEEeCCCcc
Confidence 568999998854332 234445556666555 589999997443
No 162
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=21.76 E-value=2.8e+02 Score=21.92 Aligned_cols=40 Identities=13% Similarity=-0.031 Sum_probs=27.5
Q ss_pred cCccEEEEccccCCCchhHHHHHHHHHHHHH-CCCeEEEcCCCC
Q 024908 62 KQGSIFHYGSISLIAEPCRSTQLAAMNLAKE-SGSILSYDPNLR 104 (260)
Q Consensus 62 ~~~d~v~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~v~~d~~~~ 104 (260)
...|.+.++|..-. ..+.+.++++..|+ .++++++.|+..
T Consensus 23 ~gtDaI~VGGS~gv---t~~~~~~~v~~ik~~~~lPvilfp~~~ 63 (205)
T TIGR01769 23 AGTDAIMVGGSLGI---VESNLDQTVKKIKKITNLPVILFPGNV 63 (205)
T ss_pred cCCCEEEEcCcCCC---CHHHHHHHHHHHHhhcCCCEEEECCCc
Confidence 34799998875322 34566667777777 578999988743
No 163
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=21.63 E-value=2.6e+02 Score=23.99 Aligned_cols=20 Identities=25% Similarity=0.182 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHCCCeEEEc
Q 024908 81 STQLAAMNLAKESGSILSYD 100 (260)
Q Consensus 81 ~~~~~~~~~a~~~~~~v~~d 100 (260)
+...++++.|++++..++.|
T Consensus 184 ~~~~~i~~~a~~~~~~ii~D 203 (383)
T TIGR03540 184 KFFKELVEFAKEYNIIVCHD 203 (383)
T ss_pred HHHHHHHHHHHHcCEEEEEe
Confidence 33444444444444444444
No 164
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=21.60 E-value=3.8e+02 Score=20.53 Aligned_cols=77 Identities=9% Similarity=0.057 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhhcCCCCCCchHHHHHHhcCCCC
Q 024908 80 RSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEITFLTGGDDHNDDNVVLEKLFHPNL 159 (260)
Q Consensus 80 ~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~g~~~~~~~~~~~~~l~~~g~ 159 (260)
.+.+..+++.+.+.+.++.+= +..+. ..++....+..-.+...+.-.+ |--++++...+++.+.+.++
T Consensus 34 ~dl~~~l~~~~~~~~~~vfll-G~~~~---v~~~~~~~l~~~yP~l~i~g~~--------g~f~~~~~~~i~~~I~~s~~ 101 (177)
T TIGR00696 34 PDLMEELCQRAGKEKLPIFLY-GGKPD---VLQQLKVKLIKEYPKLKIVGAF--------GPLEPEERKAALAKIARSGA 101 (177)
T ss_pred HHHHHHHHHHHHHcCCeEEEE-CCCHH---HHHHHHHHHHHHCCCCEEEEEC--------CCCChHHHHHHHHHHHHcCC
Confidence 356666777777766655442 11110 1122333333334444444321 11122222335566666777
Q ss_pred eEEEEecCC
Q 024908 160 KLLIVTEGS 168 (260)
Q Consensus 160 ~~vivt~G~ 168 (260)
..|+|-+|.
T Consensus 102 dil~VglG~ 110 (177)
T TIGR00696 102 GIVFVGLGC 110 (177)
T ss_pred CEEEEEcCC
Confidence 777777775
No 165
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=21.30 E-value=1.8e+02 Score=19.92 Aligned_cols=25 Identities=16% Similarity=-0.149 Sum_probs=18.7
Q ss_pred HHHHHHHHHHCCCeEEEcCCCCCCC
Q 024908 83 QLAAMNLAKESGSILSYDPNLRLPL 107 (260)
Q Consensus 83 ~~~~~~~a~~~~~~v~~d~~~~~~~ 107 (260)
..++++.|++.+.+++++.....+.
T Consensus 6 ~~~a~~~Ak~~~K~llv~~~~~~c~ 30 (114)
T cd02958 6 FEDAKQEAKSEKKWLLVYLQSEDEF 30 (114)
T ss_pred HHHHHHHHHhhCceEEEEEecCCcc
Confidence 3457778898899999988765553
No 166
>PRK09562 mazG nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=20.94 E-value=4.1e+02 Score=21.88 Aligned_cols=58 Identities=17% Similarity=-0.004 Sum_probs=39.8
Q ss_pred CCchHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHhhHHhh-------hcCCCCCCCCHHHHHHHHhhcc
Q 024908 194 GAGDSFVSGILNCLAADQNLIKDENRLREALLFANACGALTVT-------ERGAIPALPTKEAALKLLHTVA 258 (260)
Q Consensus 194 GaGDaf~Ag~~~~l~~g~~~~~~~~~~~~a~~~a~~~Aa~~~~-------~~g~~~~~~~~~~l~~~~~~~~ 258 (260)
-.||.+.+-+.++...|.+ ++++++.++.==..-.. ..|......+.+++.+..++.+
T Consensus 193 ElGDlLf~lv~lAr~~~id-------~E~aL~~a~~Kf~rR~~~vE~~~~~~g~~~~~~s~ee~~~~W~~aK 257 (262)
T PRK09562 193 EFGDLLFALVNLARHLGID-------PEAALRKANAKFERRFRAVEQLAAAQGKTLEDASLEEMDALWQEAK 257 (262)
T ss_pred HHHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHhHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH
Confidence 4599999999999999999 99999877643222211 2232223458888888877665
No 167
>PRK14038 ADP-dependent glucokinase; Provisional
Probab=20.84 E-value=75 Score=28.40 Aligned_cols=30 Identities=23% Similarity=0.209 Sum_probs=21.1
Q ss_pred ceeeecCccc-ccccCCCCchHHHHHHHHHH
Q 024908 178 FKGRVPGVKT-KAVDTTGAGDSFVSGILNCL 207 (260)
Q Consensus 178 ~~~~~~~~~~-~~vdt~GaGDaf~Ag~~~~l 207 (260)
....+|..-+ +++.|+|-||+-+||--.+.
T Consensus 419 ~~~~~Pt~~v~~P~sTVGlGDtiss~af~~~ 449 (453)
T PRK14038 419 QLAFIPTKIVAKPKSTVGIGDTISSSAFVGE 449 (453)
T ss_pred eEEEeehhhccCCccccccCccccHHHHHHH
Confidence 3444555444 79999999999987755543
No 168
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=20.82 E-value=4.6e+02 Score=21.26 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=29.6
Q ss_pred chhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHh
Q 024908 77 EPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEIT 136 (260)
Q Consensus 77 ~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~ 136 (260)
..+.+...++.+.|++.|+..+..|. +. ....++.++ .++.+|+-..|+-
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~stpf-------d~-~s~d~l~~~--~~~~~KIaS~dl~ 101 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFSTPF-------DE-ESVDFLEEL--GVPAYKIASGDLT 101 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEEEE--------SH-HHHHHHHHH--T-SEEEE-GGGTT
T ss_pred cCCHHHHHHHHHHHHHcCCEEEECCC-------CH-HHHHHHHHc--CCCEEEecccccc
Confidence 35678889999999999998887774 12 223333322 4788887665443
No 169
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=20.79 E-value=4.9e+02 Score=21.60 Aligned_cols=87 Identities=16% Similarity=0.155 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHh---hh--cCCC----------
Q 024908 78 PCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVSDDEIT---FL--TGGD---------- 142 (260)
Q Consensus 78 ~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~---~l--~g~~---------- 142 (260)
...+.+..+-+.+.+.|.+++-+.. + .+.++....++|++-+-..-++ .| .|..
T Consensus 93 lge~gL~~l~~a~~~~Gl~vvtEvm-------~----~~~~e~~~~y~DilqvGARNMQNF~LLke~G~~~kPvLLKRg~ 161 (286)
T COG2876 93 LGEEGLKLLKRAADETGLPVVTEVM-------D----VRDVEAAAEYADILQVGARNMQNFALLKEVGRQNKPVLLKRGL 161 (286)
T ss_pred cCHHHHHHHHHHHHHcCCeeEEEec-------C----HHHHHHHHhhhhHHHhcccchhhhHHHHHhcccCCCeEEecCc
Confidence 3445666666677788988887764 1 3455566778888876433322 21 2221
Q ss_pred --CCCchHHHHHHhcCCCCeEEEEecCCCceEEEecC
Q 024908 143 --DHNDDNVVLEKLFHPNLKLLIVTEGSKGCRYYTKE 177 (260)
Q Consensus 143 --~~~~~~~~~~~l~~~g~~~vivt~G~~G~~~~~~~ 177 (260)
+.++...+++.++..|...||. +++|+.-+.+.
T Consensus 162 ~aTieEwL~AAEYI~s~GN~~vIL--CERGIRtfe~~ 196 (286)
T COG2876 162 SATIEEWLNAAEYILSHGNGNVIL--CERGIRTFEKA 196 (286)
T ss_pred cccHHHHHHHHHHHHhCCCCcEEE--Eeccccccccc
Confidence 3445555777888888777654 35566555543
No 170
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=20.09 E-value=5.7e+02 Score=22.06 Aligned_cols=76 Identities=17% Similarity=0.109 Sum_probs=45.3
Q ss_pred cCccEEEEccc--cC---CCchhHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhh-hCCEEecCHHHH
Q 024908 62 KQGSIFHYGSI--SL---IAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWD-QADIIKVSDDEI 135 (260)
Q Consensus 62 ~~~d~v~~~~~--~~---~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~-~~dvl~~n~~E~ 135 (260)
..+|.||+|.- .+ ..+.+.+.+.+.++.|+++|+++.+-.+.....- ..+.+...+..+.+ .+|-+++++-=+
T Consensus 25 ~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~-~~~~~~~~l~~l~e~GvDaviv~Dpg~ 103 (347)
T COG0826 25 AGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHND-ELETLERYLDRLVELGVDAVIVADPGL 103 (347)
T ss_pred cCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccc-hhhHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 45899998854 11 2246778899999999999997665443322211 12223444444433 577777776544
Q ss_pred hhh
Q 024908 136 TFL 138 (260)
Q Consensus 136 ~~l 138 (260)
-.+
T Consensus 104 i~l 106 (347)
T COG0826 104 IML 106 (347)
T ss_pred HHH
Confidence 333
No 171
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=20.07 E-value=2.6e+02 Score=20.57 Aligned_cols=22 Identities=9% Similarity=-0.091 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHCCCeEEEc
Q 024908 79 CRSTQLAAMNLAKESGSILSYD 100 (260)
Q Consensus 79 ~~~~~~~~~~~a~~~~~~v~~d 100 (260)
..+.+..+++.+++.|.+|++-
T Consensus 21 ~~~~i~~l~~~ar~~g~pVi~~ 42 (157)
T cd01012 21 LINNTVKLAKAAKLLDVPVILT 42 (157)
T ss_pred HHHHHHHHHHHHHhcCCCEEEE
Confidence 3456777888999999998874
No 172
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=20.04 E-value=1.6e+02 Score=18.35 Aligned_cols=19 Identities=5% Similarity=0.239 Sum_probs=14.5
Q ss_pred HHHHHHHCCCCCCceEEcC
Q 024908 2 LANILKENNVDTSGVRYDS 20 (260)
Q Consensus 2 i~~~l~~~gi~~~~v~~~~ 20 (260)
+++.+++.|++...+...+
T Consensus 16 vL~~f~~~~vni~~I~Srp 34 (75)
T cd04880 16 ALKVFAERGINLTKIESRP 34 (75)
T ss_pred HHHHHHHCCCCEEEEEeee
Confidence 5778999999988775443
No 173
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=20.03 E-value=3.5e+02 Score=24.80 Aligned_cols=69 Identities=6% Similarity=-0.028 Sum_probs=35.7
Q ss_pred HHHHHHHHHCCCeEEEcCCCCCCCCCCHHHHHHHHHHHhhhCCE-EecCHHHHhhhcCCCCCCchHHHHHHhcC-CCCeE
Q 024908 84 LAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADI-IKVSDDEITFLTGGDDHNDDNVVLEKLFH-PNLKL 161 (260)
Q Consensus 84 ~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~dv-l~~n~~E~~~l~g~~~~~~~~~~~~~l~~-~g~~~ 161 (260)
..+.++..+.|++-+|-+-...- ...+..+....++ ...|.+|+-.- -+++.+.+ +|...
T Consensus 8 ~YLf~RL~q~gvksvfgVPGDFN--------L~LLD~l~~~~~lrwvGn~NELNaA----------YAADGYAR~~Gi~a 69 (561)
T KOG1184|consen 8 EYLFRRLVQAGVKTVFGVPGDFN--------LSLLDKLYAVPGLRWVGNCNELNAA----------YAADGYARSKGIGA 69 (561)
T ss_pred HHHHHHHHHcCCceeEECCCccc--------HHHHHHhhhcCCceeecccchhhhh----------hhhcchhhhcCceE
Confidence 45778888999998886521111 2222222222221 12333333221 13444444 78888
Q ss_pred EEEecCCCc
Q 024908 162 LIVTEGSKG 170 (260)
Q Consensus 162 vivt~G~~G 170 (260)
+|+|-|=-+
T Consensus 70 ~VtTfgVGe 78 (561)
T KOG1184|consen 70 CVTTFGVGE 78 (561)
T ss_pred EEEEeccch
Confidence 999987543
Done!