BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024911
         (260 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of
           Atwrky4
 pdb|2LEX|A Chain A, Complex Of The C-Terminal Wrky Domain Of Atwrky4 And A
           W-Box Dna
          Length = 78

 Score =  132 bits (333), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 66/71 (92%)

Query: 73  VQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITT 132
           VQTTS++D+LDDGYRWRKYGQKVVKGNP PRSYYKCT PGC VRKHVERA+ D +AV+TT
Sbjct: 8   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTT 67

Query: 133 YEGKHNHDVPA 143
           YEGKHNHD+PA
Sbjct: 68  YEGKHNHDLPA 78


>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1,
           An Sa-Induced And Partially Npr1-Dependent Transcription
           Factor
          Length = 76

 Score =  120 bits (301), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 51/73 (69%), Positives = 64/73 (87%)

Query: 70  RVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAV 129
           R+VV T +  DI++DGYRWRKYGQK VKG+P PRSYY+C+ PGCPV+KHVER+SHD + +
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61

Query: 130 ITTYEGKHNHDVP 142
           ITTYEGKH+HD+P
Sbjct: 62  ITTYEGKHDHDMP 74


>pdb|1FON|A Chain A, Crystal Structure Of Bovine Procarboxypeptidase A-S6
           Subunit Iii, A Highly Structured Truncated Zymogen E
 pdb|1FON|B Chain B, Crystal Structure Of Bovine Procarboxypeptidase A-S6
           Subunit Iii, A Highly Structured Truncated Zymogen E
          Length = 240

 Score = 31.2 bits (69), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 11/36 (30%), Positives = 23/36 (63%)

Query: 49  WKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDD 84
           W++ G +  +SA G  T+++P V  + ++ ID +D+
Sbjct: 200 WQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDE 235


>pdb|1WQA|A Chain A, Crystal Structure Of Pyrococcus Horikoshii
           PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
 pdb|1WQA|B Chain B, Crystal Structure Of Pyrococcus Horikoshii
           PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
 pdb|1WQA|C Chain C, Crystal Structure Of Pyrococcus Horikoshii
           PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
 pdb|1WQA|D Chain D, Crystal Structure Of Pyrococcus Horikoshii
           PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
          Length = 455

 Score = 30.4 bits (67), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 12/85 (14%)

Query: 39  FDEDEPEAKRWKI-EGESEGISAPGSRTV-----------REPRVVVQTTSDIDILDDGY 86
           F ED   AK ++I E   E I  P    +           R+P VVV T++    L   Y
Sbjct: 133 FKEDFDRAKWYEIGEVRREDIIKPYIEAIKSKVDVEAIKKRKPFVVVDTSNGAGSLTLPY 192

Query: 87  RWRKYGQKVVKGNPNPRSYYKCTHP 111
             R+ G KV+  N  P  Y+   +P
Sbjct: 193 LLRELGCKVITVNAQPDGYFPARNP 217


>pdb|1PYT|C Chain C, Ternary Complex Of Procarboxypeptidase A, Proproteinase E,
           And Chymotrypsinogen C
          Length = 253

 Score = 29.6 bits (65), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 10/36 (27%), Positives = 23/36 (63%)

Query: 49  WKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDD 84
           W++ G +  +SA G  T+++P V  + ++ ID +++
Sbjct: 213 WQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWINE 248


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.131    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,681,297
Number of Sequences: 62578
Number of extensions: 298528
Number of successful extensions: 362
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 353
Number of HSP's gapped (non-prelim): 17
length of query: 260
length of database: 14,973,337
effective HSP length: 97
effective length of query: 163
effective length of database: 8,903,271
effective search space: 1451233173
effective search space used: 1451233173
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)