Query 024911
Match_columns 260
No_of_seqs 229 out of 766
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 16:36:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024911.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024911hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 5.4E-38 1.8E-42 239.7 6.0 76 69-144 1-76 (76)
2 1wj2_A Probable WRKY transcrip 100.0 7.4E-38 2.5E-42 240.0 4.3 75 69-143 4-78 (78)
3 2rpr_A Flywch-type zinc finger 84.3 0.59 2E-05 34.6 2.7 49 81-142 23-74 (87)
4 1cz6_A Protein (androctonin); 28.6 17 0.00059 22.3 0.7 8 104-111 16-23 (26)
5 1odh_A MGCM1; transcription fa 17.9 72 0.0025 27.5 2.7 22 124-145 139-160 (174)
6 3ed7_A Tsase, TS, thymidylate 12.3 42 0.0014 30.9 -0.2 11 84-94 117-127 (295)
7 3kgb_A Thymidylate synthase 1/ 12.2 42 0.0014 30.8 -0.3 11 84-94 114-124 (294)
8 1xiw_B T-cell surface glycopro 11.3 49 0.0017 24.2 -0.1 27 83-109 17-53 (79)
9 1qxn_A SUD, sulfide dehydrogen 10.9 83 0.0028 24.0 1.1 23 79-101 110-133 (137)
10 3kp1_A D-ornithine aminomutase 10.1 75 0.0026 32.9 0.7 49 83-134 29-82 (763)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=5.4e-38 Score=239.67 Aligned_cols=76 Identities=67% Similarity=1.298 Sum_probs=73.3
Q ss_pred CceEEeecCCCCCCCCchhhhhcCcccccCCCCCccceeecCCCCCccchhhhhcCCCCeEEEEEecccCCCCCCC
Q 024911 69 PRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAA 144 (260)
Q Consensus 69 prvvvqT~Sdidi~dDGY~WRKYGQK~IKGn~~PRSYYRCT~~gCpakK~Vqr~~~D~~~~itTY~G~HnH~~P~a 144 (260)
.||+|+|.+++++++|||+|||||||.|||++|||+|||||+++|+|+|+|||+.+|+.+++|||+|+|||+.|.+
T Consensus 1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~~ 76 (76)
T 2ayd_A 1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPPG 76 (76)
T ss_dssp CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCCC
T ss_pred CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCCC
Confidence 3799999999999999999999999999999999999999999999999999999999999999999999999863
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=100.00 E-value=7.4e-38 Score=239.99 Aligned_cols=75 Identities=79% Similarity=1.322 Sum_probs=69.7
Q ss_pred CceEEeecCCCCCCCCchhhhhcCcccccCCCCCccceeecCCCCCccchhhhhcCCCCeEEEEEecccCCCCCC
Q 024911 69 PRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPA 143 (260)
Q Consensus 69 prvvvqT~Sdidi~dDGY~WRKYGQK~IKGn~~PRSYYRCT~~gCpakK~Vqr~~~D~~~~itTY~G~HnH~~P~ 143 (260)
.+|+|+|.+++++++|||+|||||||.|||++|||+|||||+++|+|+|+|||+.+|+.+++|||+|+|||+.|+
T Consensus 4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 378999999999999999999999999999999999999999999999999999999999999999999999984
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=84.33 E-value=0.59 Score=34.58 Aligned_cols=49 Identities=18% Similarity=0.455 Sum_probs=32.1
Q ss_pred CCCCchhhhhcCcccccCCCCCccceeecC---CCCCccchhhhhcCCCCeEEEEEecccCCCCC
Q 024911 81 ILDDGYRWRKYGQKVVKGNPNPRSYYKCTH---PGCPVRKHVERASHDLRAVITTYEGKHNHDVP 142 (260)
Q Consensus 81 i~dDGY~WRKYGQK~IKGn~~PRSYYRCT~---~gCpakK~Vqr~~~D~~~~itTY~G~HnH~~P 142 (260)
++-|||.-.+--+ ...+.|.+|+. .+|.|+-.... + .+ ...+.|||++.
T Consensus 23 Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~---~--~~--~~~~~HnH~p~ 74 (87)
T 2rpr_A 23 LVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG---H--RI--MVMRSHCHQPD 74 (87)
T ss_dssp EEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET---T--EE--EECSCCSSCCC
T ss_pred EEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC---C--CE--ECCCCcCCCCc
Confidence 5569998775321 12368999986 58999855432 1 23 35688999764
No 4
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=28.64 E-value=17 Score=22.35 Aligned_cols=8 Identities=63% Similarity=1.381 Sum_probs=6.6
Q ss_pred cceeecCC
Q 024911 104 SYYKCTHP 111 (260)
Q Consensus 104 SYYRCT~~ 111 (260)
.||+||+.
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 69999973
No 5
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=17.90 E-value=72 Score=27.54 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=17.1
Q ss_pred CCCCeEEEEEecccCCCCCCCC
Q 024911 124 HDLRAVITTYEGKHNHDVPAAR 145 (260)
Q Consensus 124 ~D~~~~itTY~G~HnH~~P~aR 145 (260)
++...+...-+|.|+|+.|.+.
T Consensus 139 h~~~~ifFqaKG~HDHpRPe~k 160 (174)
T 1odh_A 139 HDGRFIFFQSKGEHDHPRPETK 160 (174)
T ss_dssp ECSSBEEEEEECCCCSCCCCCH
T ss_pred EcCCEEEEecccccCCCCCCCc
Confidence 4455666778999999999874
No 6
>3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase, nucleotide biosynthesis; 1.56A {Homo sapiens} SCOP: d.117.1.1 PDB: 3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A 3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 4gyh_A 4h1i_A 2rd8_A* 2rda_A 3h9k_A* 3hb8_A* 3ob7_A* 1ju6_A* ...
Probab=12.34 E-value=42 Score=30.89 Aligned_cols=11 Identities=36% Similarity=1.289 Sum_probs=9.1
Q ss_pred CchhhhhcCcc
Q 024911 84 DGYRWRKYGQK 94 (260)
Q Consensus 84 DGY~WRKYGQK 94 (260)
=|++||.+|.+
T Consensus 117 YG~QwR~~~~~ 127 (295)
T 3ed7_A 117 YGFQWRHFGAE 127 (295)
T ss_dssp THHHHHHBTCC
T ss_pred hhhhhhccCCc
Confidence 47999999865
No 7
>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode, methyltransferase, nucleotide biosynt transferase, structural genomics; 2.20A {Encephalitozoon cuniculi} SCOP: d.117.1.1
Probab=12.15 E-value=42 Score=30.84 Aligned_cols=11 Identities=36% Similarity=1.334 Sum_probs=9.0
Q ss_pred CchhhhhcCcc
Q 024911 84 DGYRWRKYGQK 94 (260)
Q Consensus 84 DGY~WRKYGQK 94 (260)
=|++||.+|.+
T Consensus 114 YG~QwR~~~~~ 124 (294)
T 3kgb_A 114 YGFQWRHFGAR 124 (294)
T ss_dssp HHHHHHSBTCC
T ss_pred cchhhhcCCCc
Confidence 47899999865
No 8
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=11.28 E-value=49 Score=24.18 Aligned_cols=27 Identities=19% Similarity=0.409 Sum_probs=18.6
Q ss_pred CCchhhhhcCccc--------cc--CCCCCccceeec
Q 024911 83 DDGYRWRKYGQKV--------VK--GNPNPRSYYKCT 109 (260)
Q Consensus 83 dDGY~WRKYGQK~--------IK--Gn~~PRSYYRCT 109 (260)
..++.|-|-|... +. ...-||.+|.|.
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~ 53 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCN 53 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEec
Confidence 4668899988642 22 334599999993
No 9
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=10.90 E-value=83 Score=24.04 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=18.4
Q ss_pred CCCCCCchh-hhhcCcccccCCCC
Q 024911 79 IDILDDGYR-WRKYGQKVVKGNPN 101 (260)
Q Consensus 79 idi~dDGY~-WRKYGQK~IKGn~~ 101 (260)
+..++.|+. |++.|-..++++++
T Consensus 110 v~~l~GG~~~W~~~g~p~~~~~~~ 133 (137)
T 1qxn_A 110 IYNSEGGMDKWLEEGLPSLDRSHH 133 (137)
T ss_dssp EEEESSCHHHHHHTTCCEECCCCC
T ss_pred eEEEcCcHHHHHHCCCCccccccc
Confidence 445778885 99999999988875
No 10
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=10.13 E-value=75 Score=32.88 Aligned_cols=49 Identities=24% Similarity=0.341 Sum_probs=31.0
Q ss_pred CCchhhhhcCcccccCCCCCccceeecCC-----CCCccchhhhhcCCCCeEEEEEe
Q 024911 83 DDGYRWRKYGQKVVKGNPNPRSYYKCTHP-----GCPVRKHVERASHDLRAVITTYE 134 (260)
Q Consensus 83 dDGY~WRKYGQK~IKGn~~PRSYYRCT~~-----gCpakK~Vqr~~~D~~~~itTY~ 134 (260)
--||.|||--.. +..-|=.|+.|+.+ .-|+-|.+......|.-++++-.
T Consensus 29 r~gw~wr~~~~~---~~~~~~~y~~~s~~l~~~~~lp~~~~~~~~~~~p~~~i~~~v 82 (763)
T 3kp1_A 29 RRGWTWRQPAEN---LQMGPFIYKDASTPLENSVALPSAKYFGDIDPQPLPVITTEI 82 (763)
T ss_dssp CCSCCCCCBCTT---EEETTEEESSEECCCSSCCCCGGGGGGTTCCCEESSEEEEEC
T ss_pred cCCccccccCCC---CCcCCcchhhhchhhhcCCCCchHHHHhhcCCCCCCEEEEEE
Confidence 479999973222 22345578889862 44777888876544566666543
Done!