BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024913
(260 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E50|A Chain A, Crystal Structure Of SetTAF-1betaINHAT
pdb|2E50|B Chain B, Crystal Structure Of SetTAF-1betaINHAT
pdb|2E50|P Chain P, Crystal Structure Of SetTAF-1betaINHAT
pdb|2E50|Q Chain Q, Crystal Structure Of SetTAF-1betaINHAT
Length = 225
Score = 181 bits (458), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 88/196 (44%), Positives = 133/196 (67%), Gaps = 9/196 (4%)
Query: 26 SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHP 85
+IE + E+Q+E++++NE+ASE++L+VEQKY+++R+P + KR+++I IP+FW+T F++HP
Sbjct: 31 AIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHP 90
Query: 86 ALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDG 145
+ LL EED++ YL+ +EV +F+D+KSGY I F F NPYFE+ L+K F +++ G
Sbjct: 91 QVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEF-HMNESG 149
Query: 146 SMKITATSIKWKEG--MGIPNGVNHEKKGNKRPLAE-ESFFTWFSDTQEKDTIDGIQDEV 202
+T IKWK G M + K KR E ESFFTWF+D D DE+
Sbjct: 150 DPSSKSTEIKWKSGKDMTKRSSQTQNKASRKRQHEEPESFFTWFTDHS-----DAGADEL 204
Query: 203 AEIIKEDLWPNPLTYF 218
E+IK+D+WPNPL Y+
Sbjct: 205 GEVIKDDIWPNPLQYY 220
>pdb|3KYP|A Chain A, Crystal Structure Of Nucleosome Assembly Protein S
(Pfnaps) Plasmodium Falciparum
pdb|3KYP|B Chain B, Crystal Structure Of Nucleosome Assembly Protein S
(Pfnaps) Plasmodium Falciparum
pdb|3KYP|C Chain C, Crystal Structure Of Nucleosome Assembly Protein S
(Pfnaps) Plasmodium Falciparum
pdb|3KYP|D Chain D, Crystal Structure Of Nucleosome Assembly Protein S
(Pfnaps) Plasmodium Falciparum
pdb|3KYP|E Chain E, Crystal Structure Of Nucleosome Assembly Protein S
(Pfnaps) Plasmodium Falciparum
pdb|3KYP|F Chain F, Crystal Structure Of Nucleosome Assembly Protein S
(Pfnaps) Plasmodium Falciparum
Length = 193
Score = 108 bits (269), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 108/196 (55%), Gaps = 13/196 (6%)
Query: 27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPA 86
++ ++IQ ++E+++ + + + + ++++Y E +KP+++KR++II+ IP FW HPA
Sbjct: 2 MQDFEDIQKDIEQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEIIQKIPGFWANTLRKHPA 61
Query: 87 LGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFS--PNPYFEDNKLTKTFTFLDDD 144
L +++ ED I +L L+++D D Y ITF F + E L K TF D++
Sbjct: 62 LSDIVP-EDIDILNHLVKLDLKDNMDNNGSYKITFIFGEKAKEFMEPLTLVKHVTF-DNN 119
Query: 145 GSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEESFFTWFSDTQEKDTIDGIQD--EV 202
+ T IKWKEG V H + + + S F WF T D +QD +V
Sbjct: 120 QEKVVECTRIKWKEGKNPIAAVTHNRSDLDNEIPKWSIFEWF-------TTDELQDKPDV 172
Query: 203 AEIIKEDLWPNPLTYF 218
E+I+ ++W NPL+Y+
Sbjct: 173 GELIRREIWHNPLSYY 188
>pdb|3HFD|A Chain A, Nucleosome Assembly Protein 1 From Plasmodium Knowlesi
Length = 276
Score = 73.9 bits (180), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 110/237 (46%), Gaps = 45/237 (18%)
Query: 26 SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDII----------KSIPD 75
+++KL+ Q E + ++ + QKY ++ P+YDKR + + ++P+
Sbjct: 20 TLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRREALVGNGEAKIGTPNLPE 79
Query: 76 FWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFK---DVKSGYSITFNFSPNPYFEDN 132
FWL A ++ + ++ + D++I YL+ + + K + K G+ ++F+F+PNP+F ++
Sbjct: 80 FWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFHFAPNPFFSNS 139
Query: 133 KLTKTFTF--LDDDGS---MKITATSIKWKEGMGI--PNGVNHEKKGNKR-------PLA 178
LTKT+ +D D + AT I W + I N V + N R +
Sbjct: 140 VLTKTYHMKCVDCDNEPVLLHTEATVIDWYDNKNILKKNVVKKQHNKNSREVKTVQQTVN 199
Query: 179 EESFFTWFSD-----------------TQEKDTIDGIQDEVAEIIKEDLWPNPLTYF 218
+SFF +F+ Q + I+G EVA IKE + P + YF
Sbjct: 200 RDSFFHFFTSHKVPNSNVIKQLSKHEVAQLEMIIEG-DYEVALTIKERIIPYAVDYF 255
>pdb|3GYV|A Chain A, Crystal Structure Of Nucleosome Assembly Protein From
Plasmodium Falciparum
pdb|3GYW|A Chain A, Crystal Structure Of Nucleosome Assembly Protein From
Plasmodium Falciparum At 2.4 A Resolution
Length = 249
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 108/237 (45%), Gaps = 45/237 (18%)
Query: 26 SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDII----------KSIPD 75
+++KL+ Q E + ++ + QKY ++ P+YDKR + + ++P+
Sbjct: 10 TLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRREALVGNGEAKIGTPNLPE 69
Query: 76 FWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFK---DVKSGYSITFNFSPNPYFEDN 132
FWL A ++ + ++ + D++I YL+ + + K + K G+ ++F F+ NP+F ++
Sbjct: 70 FWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFYFATNPFFSNS 129
Query: 133 KLTKTFTF--LDDDGS---MKITATSIKWKEGMGI--PNGVNHEKKGNKR-------PLA 178
LTKT+ +D D + AT I W + I N V + N R +
Sbjct: 130 VLTKTYHMKCVDCDNEPVLLHTEATVIDWYDNKNILKKNVVKKQHNKNSREVKTVQQTVN 189
Query: 179 EESFFTWFSD-----------------TQEKDTIDGIQDEVAEIIKEDLWPNPLTYF 218
+SFF +F+ Q + I+G EVA IKE + P + Y+
Sbjct: 190 RDSFFHFFTSHKVPNSNVIKQLSKHEVAQLEMIIEG-DYEVALTIKERIIPYAVDYY 245
>pdb|3FS3|A Chain A, Crystal Structure Of Malaria Parasite Nucleosome Assembly
Protein (Nap)
Length = 359
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 108/237 (45%), Gaps = 45/237 (18%)
Query: 26 SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDII----------KSIPD 75
+++KL+ Q E + ++ + QKY ++ P+YDKR + + ++P+
Sbjct: 54 TLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRREALVGNGEAKIGTPNLPE 113
Query: 76 FWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDF---KDVKSGYSITFNFSPNPYFEDN 132
FWL A ++ + ++ + D++I YL+ + + K+ K G+ ++F F+ NP+F ++
Sbjct: 114 FWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFYFATNPFFSNS 173
Query: 133 KLTKTFTF--LDDDGS---MKITATSIKWKEGMGI--PNGVNHEKKGNKR-------PLA 178
LTKT+ +D D + AT I W + I N V + N R +
Sbjct: 174 VLTKTYHMKCVDCDNEPVLLHTEATVIDWYDNKNILKKNVVKKQHNKNSREVKTVQQTVN 233
Query: 179 EESFFTWFSD-----------------TQEKDTIDGIQDEVAEIIKEDLWPNPLTYF 218
+SFF +F+ Q + I+G EVA IKE + P + Y+
Sbjct: 234 RDSFFHFFTSHKVPNSNVIKQLSKHEVAQLEMIIEG-DYEVALTIKERIIPYAVDYY 289
>pdb|2AYU|A Chain A, The Structure Of Nucleosome Assembly Protein Suggests A
Mechanism For Histone Binding And Shuttling
Length = 417
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 41 NEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFR 100
+E E + E E E K D + +K IP FWLTA + P + + +++ D ++
Sbjct: 153 GQEIVESLNETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLE 212
Query: 101 YLSSLEVEDFKDVKSGYSITFNF--SPNPYFEDNKLTKTFTFLDDDG 145
YL + +E D + G+ + F F S NP+F ++ L KT+ + + G
Sbjct: 213 YLQDIGLEYLTDGRPGFKLLFRFDSSANPFFTNDILCKTYFYQKELG 259
>pdb|2Z2R|A Chain A, Nucleosome Assembly Proteins I (Nap-1, 74-365)
pdb|2Z2R|B Chain B, Nucleosome Assembly Proteins I (Nap-1, 74-365)
Length = 292
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 41 NEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFR 100
+E E + E E E K D + +K IP FWLTA + P + + +++ D ++
Sbjct: 80 GQEIVESLNETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLE 139
Query: 101 YLSSLEVEDFKDVKSGYSITFNF--SPNPYFEDNKLTKTFTFLDDDG 145
YL + +E D + G+ + F F S NP+F ++ L KT+ + + G
Sbjct: 140 YLQDIGLEYLTDGRPGFKLLFRFDSSANPFFTNDILCKTYFYQKELG 186
>pdb|3Q33|B Chain B, Structure Of The Rtt109-AccoaVPS75 COMPLEX AND
IMPLICATIONS FOR Chaperone-Mediated Histone Acetylation
pdb|3Q35|B Chain B, Structure Of The Rtt109-AccoaVPS75 COMPLEX AND
IMPLICATIONS FOR Chaperone-Mediated Histone Acetylation
Length = 232
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 81/206 (39%), Gaps = 31/206 (15%)
Query: 37 LEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQ 96
L K EE EVE KPVY+KR+ I I +FW H + + D
Sbjct: 18 LAKCEEEVDAIEREVELYRLNKMKPVYEKRDAYIDEIAEFWKIVLSQHVSFANYIRASDF 77
Query: 97 KIFRYLSSLEVE------DFKDVKSGYSITFNFSP-NPYFEDNKLTKTFTFL-----DDD 144
K + ++VE + D + +SITF+F F++ ++TK F +D
Sbjct: 78 KYIDTIDKIKVEWLALESEMYDTRD-FSITFHFHGIEGDFKEQQVTKVFQIKKGKDDQED 136
Query: 145 GSMKITATSIKWKEGMG-----------IPNGVNHEKKGNKRPLAEESFFTWFSDTQEKD 193
G + I+W + P G ++G K + F WF T K
Sbjct: 137 GILTSEPVPIEWPQSYDSINPDLIKDKRSPEGKKKYRQGMK------TIFGWFRWTGLKP 190
Query: 194 TIDGIQ-DEVAEIIKEDLWPNPLTYF 218
+ D +A + E+++P + Y+
Sbjct: 191 GKEFPHGDSLASLFSEEIYPFCVKYY 216
>pdb|2ZD7|A Chain A, The Structure Of Vps75 (Vacuolar Protein
Sorting-Associated Protein 75)
pdb|2ZD7|B Chain B, The Structure Of Vps75 (Vacuolar Protein
Sorting-Associated Protein 75)
pdb|3Q66|A Chain A, Structure Of The Vps75-Rtt109 Histone Chaperone-Lysine
Acetyltransferase Complex (Full-Length Proteins In Space
Group P6122)
pdb|3Q66|B Chain B, Structure Of The Vps75-Rtt109 Histone Chaperone-Lysine
Acetyltransferase Complex (Full-Length Proteins In Space
Group P6122)
pdb|3Q68|A Chain A, Structure Of The Vps75-Rtt109 Histone Chaperone-Lysine
Acetyltransferase Complex (Full-Length Proteins In Space
Group P212121)
pdb|3Q68|B Chain B, Structure Of The Vps75-Rtt109 Histone Chaperone-Lysine
Acetyltransferase Complex (Full-Length Proteins In Space
Group P212121)
Length = 264
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 81/206 (39%), Gaps = 31/206 (15%)
Query: 37 LEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQ 96
L K EE EVE KPVY+KR+ I I +FW H + + D
Sbjct: 18 LAKCEEEVDAIEREVELYRLNKMKPVYEKRDAYIDEIAEFWKIVLSQHVSFANYIRASDF 77
Query: 97 KIFRYLSSLEVE------DFKDVKSGYSITFNFSP-NPYFEDNKLTKTFTFL-----DDD 144
K + ++VE + D + +SITF+F F++ ++TK F +D
Sbjct: 78 KYIDTIDKIKVEWLALESEMYDTRD-FSITFHFHGIEGDFKEQQVTKVFQIKKGKDDQED 136
Query: 145 GSMKITATSIKWKEGMG-----------IPNGVNHEKKGNKRPLAEESFFTWFSDTQEKD 193
G + I+W + P G ++G K + F WF T K
Sbjct: 137 GILTSEPVPIEWPQSYDSINPDLIKDKRSPEGKKKYRQGMK------TIFGWFRWTGLKP 190
Query: 194 TIDGIQ-DEVAEIIKEDLWPNPLTYF 218
+ D +A + E+++P + Y+
Sbjct: 191 GKEFPHGDSLASLFSEEIYPFCVKYY 216
>pdb|3C9D|A Chain A, Crystal Structure Of Vps75
pdb|3C9D|B Chain B, Crystal Structure Of Vps75
Length = 259
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 81/206 (39%), Gaps = 31/206 (15%)
Query: 37 LEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQ 96
L K EE EVE KPVY+KR+ I I +FW H + + D
Sbjct: 18 LAKCEEEVDAIEREVELYRLNKMKPVYEKRDAYIDEIAEFWKIVLSQHVSFANYIRASDF 77
Query: 97 KIFRYLSSLEVE------DFKDVKSGYSITFNFSP-NPYFEDNKLTKTFTFL-----DDD 144
K + ++VE + D + +SITF+F F++ ++TK F +D
Sbjct: 78 KYIDTIDKIKVEWLALESEMYDTRD-FSITFHFHGIEGDFKEQQVTKVFQIKKGKDDQED 136
Query: 145 GSMKITATSIKWKEGMG-----------IPNGVNHEKKGNKRPLAEESFFTWFSDTQEKD 193
G + I+W + P G ++G K + F WF T K
Sbjct: 137 GILTSEPVPIEWPQSYDSINPDLIKDKRSPEGKKKYRQGMK------TIFGWFRWTGLKP 190
Query: 194 TIDGIQ-DEVAEIIKEDLWPNPLTYF 218
+ D +A + E+++P + Y+
Sbjct: 191 GKEFPHGDSLASLFSEEIYPFCVKYY 216
>pdb|3C9B|A Chain A, Crystal Structure Of Semet Vps75
pdb|3C9B|B Chain B, Crystal Structure Of Semet Vps75
Length = 259
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 81/209 (38%), Gaps = 37/209 (17%)
Query: 37 LEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQ 96
L K EE EVE KPVY+KR+ I I +FW H + + D
Sbjct: 18 LAKCEEEVDAIEREVELYRLNKXKPVYEKRDAYIDEIAEFWKIVLSQHVSFANYIRASDF 77
Query: 97 KIFRYLSSLEVE---------DFKDVKSGYSITFNFSP-NPYFEDNKLTKTFTFL----- 141
K + ++VE D +D +SITF+F F++ ++TK F
Sbjct: 78 KYIDTIDKIKVEWLALESEXYDTRD----FSITFHFHGIEGDFKEQQVTKVFQIKKGKDD 133
Query: 142 DDDGSMKITATSIKWKEGMG-----------IPNGVNHEKKGNKRPLAEESFFTWFSDTQ 190
+DG + I+W + P G ++G K + F WF T
Sbjct: 134 QEDGILTSEPVPIEWPQSYDSINPDLIKDKRSPEGKKKYRQGXK------TIFGWFRWTG 187
Query: 191 EKDTIDGIQ-DEVAEIIKEDLWPNPLTYF 218
K + D +A + E+++P + Y+
Sbjct: 188 LKPGKEFPHGDSLASLFSEEIYPFCVKYY 216
>pdb|3DM7|A Chain A, Crystal Structure Of The Vps75 Histone Chaperone
pdb|3DM7|B Chain B, Crystal Structure Of The Vps75 Histone Chaperone
Length = 234
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 83/206 (40%), Gaps = 31/206 (15%)
Query: 37 LEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQ 96
L K EE EVE KPVY+KR+ I I +FW H + + D
Sbjct: 20 LAKCEEEVDAIEREVELYRLNKXKPVYEKRDAYIDEIAEFWKIVLSQHVSFANYIRASDF 79
Query: 97 KIFRYLSSLEVE---------DFKDVKSGYSITFNFSP-NPYFEDNKLTKTFTFL----- 141
K + ++VE D +D +SITF+F F++ ++TK F
Sbjct: 80 KYXDTIDKIKVEWLALESEXYDTRD----FSITFHFHGIEGDFKEQQVTKVFQIKKGKDD 135
Query: 142 DDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRP--------LAEESFFTWFSDTQEKD 193
+DG + I+W + + +N + +KR ++ F WF T K
Sbjct: 136 QEDGILTSEPVPIEWPQSY---DSINPDLXKDKRSPEGKKKYRQGXKTIFGWFRWTGLKP 192
Query: 194 TIDGIQ-DEVAEIIKEDLWPNPLTYF 218
+ D +A + E+++P + Y+
Sbjct: 193 GKEFPHGDSLASLFSEEIYPFCVKYY 218
>pdb|3H0G|B Chain B, Rna Polymerase Ii From Schizosaccharomyces Pombe
pdb|3H0G|N Chain N, Rna Polymerase Ii From Schizosaccharomyces Pombe
Length = 1210
Score = 29.3 bits (64), Expect = 2.3, Method: Composition-based stats.
Identities = 31/142 (21%), Positives = 57/142 (40%), Gaps = 20/142 (14%)
Query: 41 NEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFR 100
N SE+ E+ + I++ + DK I F TA +S + L +EE++ +
Sbjct: 628 NNPNSERRGELCIRKEHIQQLIEDKDRYDIDPEQRFGWTALVSSGLIEYLDAEEEETVMI 687
Query: 101 YLSSLEVEDFKDVKSGYSITFNF--------SPNPYFED------------NKLTKTFTF 140
+S ++E + +++GY + +PNP+ L F
Sbjct: 688 AMSPEDLEASRQMQAGYEVKEELDPAQRVKPAPNPHVHAWTHCEIHPAMILGILASIIPF 747
Query: 141 LDDDGSMKITATSIKWKEGMGI 162
D + S + T S K+ MG+
Sbjct: 748 PDHNQSPRNTYQSAMGKQAMGV 769
>pdb|3G6I|A Chain A, Crystal Structure Of An Outer Membrane Protein, Part Of A
Putative Carbohydrate Binding Complex (Bt_1022) From
Bacteroides Thetaiotaomicron Vpi-5482 At 1.93 A
Resolution
Length = 204
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 20/131 (15%)
Query: 15 NAEQIDSELVLSI-EKLQEIQDELEKINEEASEKVLEV-EQKYSEIRKPVYDKRNDIIKS 72
N E D + V SI + Q+I D+L + + +E V V +Y E+ +Y+ R+ +K+
Sbjct: 6 NKENRDPKYVESIVNRSQKIVDKLGLTDAKVAEDVCNVIANRYFEL-NDIYEIRDAKVKA 64
Query: 73 IPDFWLTAFISHPALGELLSEEDQKIFR-----------YLSSLEVEDFKD------VKS 115
+ + LT + AL +E+D ++R +L+ ++E KD VK
Sbjct: 65 VKESGLTGDAKNEALKAAENEKDAALYRSHFAFPASLSLFLNEEQIEAVKDGXTYGVVKV 124
Query: 116 GYSITFNFSPN 126
Y T + P+
Sbjct: 125 TYEATLDXIPS 135
>pdb|1G6P|A Chain A, Solution Nmr Structure Of The Cold Shock Protein From The
Hyperthermophilic Bacterium Thermotoga Maritima
Length = 66
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 81 FISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITF 121
F S G + +E +F + S++E+E FK +K G + F
Sbjct: 8 FDSKKGYGFITKDEGGDVFVHWSAIEMEGFKTLKEGQVVEF 48
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.132 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,906,975
Number of Sequences: 62578
Number of extensions: 301697
Number of successful extensions: 984
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 907
Number of HSP's gapped (non-prelim): 78
length of query: 260
length of database: 14,973,337
effective HSP length: 97
effective length of query: 163
effective length of database: 8,903,271
effective search space: 1451233173
effective search space used: 1451233173
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.9 bits)