Query 024913
Match_columns 260
No_of_seqs 124 out of 598
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 08:25:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024913.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024913hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00007 (NAP-L) nucleosome as 100.0 5.1E-60 1.1E-64 437.5 22.3 217 12-228 28-285 (337)
2 KOG1507 Nucleosome assembly pr 100.0 1.3E-57 2.8E-62 415.7 17.3 209 14-222 66-339 (358)
3 PTZ00008 (NAP-S) nucleosome as 100.0 9.6E-54 2.1E-58 367.8 16.7 180 39-225 2-183 (185)
4 PF00956 NAP: Nucleosome assem 100.0 4.3E-53 9.2E-58 378.3 21.4 198 24-222 1-244 (244)
5 KOG1508 DNA replication factor 100.0 9.2E-35 2E-39 262.1 9.9 230 15-250 22-252 (260)
6 PF11629 Mst1_SARAH: C termina 94.7 0.13 2.7E-06 35.1 5.6 37 30-66 10-46 (49)
7 PF09026 CENP-B_dimeris: Centr 92.2 0.04 8.8E-07 42.7 0.0 6 226-231 13-18 (101)
8 PF07352 Phage_Mu_Gam: Bacteri 91.9 0.81 1.8E-05 38.0 7.5 56 21-76 3-58 (149)
9 KOG1508 DNA replication factor 89.4 0.01 2.2E-07 54.0 -6.7 143 52-226 13-156 (260)
10 COG4396 Mu-like prophage host- 88.5 1.5 3.2E-05 36.5 6.0 66 12-77 9-74 (170)
11 PF06524 NOA36: NOA36 protein; 85.5 0.78 1.7E-05 41.9 3.1 9 113-121 139-147 (314)
12 PF04931 DNA_pol_phi: DNA poly 82.9 0.9 1.9E-05 47.4 2.7 22 25-46 341-362 (784)
13 KOG1832 HIV-1 Vpr-binding prot 74.7 1.8 3.9E-05 45.8 1.9 7 129-135 1246-1252(1516)
14 KOG1832 HIV-1 Vpr-binding prot 70.1 2.8 6.2E-05 44.4 2.1 8 127-134 1280-1287(1516)
15 PF07516 SecA_SW: SecA Wing an 67.2 19 0.0004 31.4 6.4 45 28-72 9-53 (214)
16 KOG0943 Predicted ubiquitin-pr 65.0 4.9 0.00011 44.1 2.6 16 48-63 1443-1458(3015)
17 PF05764 YL1: YL1 nuclear prot 63.1 11 0.00024 33.8 4.3 15 218-232 35-49 (240)
18 PHA02608 67 prohead core prote 60.8 5.2 0.00011 29.9 1.4 7 251-257 73-79 (80)
19 KOG1834 Calsyntenin [Extracell 56.7 8 0.00017 39.8 2.4 30 209-238 878-907 (952)
20 PF04147 Nop14: Nop14-like fam 54.3 10 0.00022 40.2 2.8 6 73-78 89-94 (840)
21 PF11705 RNA_pol_3_Rpc31: DNA- 52.3 13 0.00028 33.0 2.8 9 59-67 67-75 (233)
22 COG1507 Uncharacterized conser 52.1 57 0.0012 27.5 6.3 67 20-91 56-130 (167)
23 PF03066 Nucleoplasmin: Nucleo 52.1 4 8.7E-05 34.1 -0.4 38 120-157 17-58 (149)
24 KOG0943 Predicted ubiquitin-pr 46.5 14 0.00031 40.8 2.4 7 76-82 1481-1487(3015)
25 COG3074 Uncharacterized protei 44.3 1.3E+02 0.0028 22.2 6.4 67 14-82 4-70 (79)
26 KOG3891 Secretory vesicle-asso 41.5 71 0.0015 30.6 5.9 87 17-107 174-271 (436)
27 KOG1189 Global transcriptional 41.1 17 0.00037 38.0 2.0 23 101-123 782-807 (960)
28 smart00502 BBC B-Box C-termina 40.8 94 0.002 23.6 5.9 56 20-75 13-68 (127)
29 PRK15422 septal ring assembly 40.1 1.3E+02 0.0029 22.5 6.1 31 14-44 4-34 (79)
30 PF12998 ING: Inhibitor of gro 39.7 51 0.0011 24.8 4.1 65 14-82 8-75 (105)
31 PF05600 DUF773: Protein of un 36.5 1.7E+02 0.0036 29.4 8.1 68 21-88 127-201 (507)
32 PRK14082 hypothetical protein; 35.9 39 0.00085 24.4 2.6 10 70-79 54-63 (65)
33 KOG0574 STE20-like serine/thre 35.6 51 0.0011 31.4 4.1 38 29-66 455-492 (502)
34 KOG2652 RNA polymerase II tran 32.8 27 0.00059 33.1 1.8 17 121-137 139-155 (348)
35 PF07324 DGCR6: DiGeorge syndr 31.8 1.2E+02 0.0025 26.7 5.4 20 18-37 56-75 (196)
36 PRK13611 photosystem II reacti 31.5 1.9E+02 0.0041 22.9 6.0 56 102-161 14-70 (104)
37 PRK14145 heat shock protein Gr 30.9 2.2E+02 0.0047 25.0 7.0 65 1-69 25-89 (196)
38 PTZ00415 transmission-blocking 30.6 39 0.00085 38.8 2.7 9 251-259 184-192 (2849)
39 KOG2038 CAATT-binding transcri 30.0 36 0.00078 35.9 2.2 10 123-132 692-701 (988)
40 TIGR00963 secA preprotein tran 29.6 1.2E+02 0.0025 32.0 5.9 46 27-72 550-595 (745)
41 PF10417 1-cysPrx_C: C-termina 29.3 20 0.00044 23.1 0.3 14 150-163 10-23 (40)
42 PF06005 DUF904: Protein of un 27.2 2.5E+02 0.0054 20.5 6.0 29 15-43 5-33 (72)
43 KOG4364 Chromatin assembly fac 26.9 48 0.001 34.3 2.5 28 223-250 523-550 (811)
44 TIGR03714 secA2 accessory Sec 26.4 1.6E+02 0.0034 31.2 6.2 47 27-73 574-620 (762)
45 KOG1991 Nuclear transport rece 26.3 31 0.00066 37.1 1.0 9 180-188 817-826 (1010)
46 PF06320 GCN5L1: GCN5-like pro 25.9 3.5E+02 0.0075 21.7 7.9 65 18-83 33-99 (121)
47 PF14389 Lzipper-MIP1: Leucine 25.6 1.7E+02 0.0038 22.0 4.9 26 17-42 50-75 (88)
48 KOG3064 RNA-binding nuclear pr 24.8 30 0.00064 31.8 0.5 52 17-68 70-125 (303)
49 PRK12904 preprotein translocas 24.8 1.8E+02 0.0038 31.1 6.2 46 27-72 606-651 (830)
50 PRK12903 secA preprotein trans 24.3 1.9E+02 0.004 31.3 6.2 46 27-72 570-615 (925)
51 PRK12326 preprotein translocas 24.3 1.8E+02 0.0038 30.8 6.0 46 27-72 576-621 (764)
52 PRK09200 preprotein translocas 24.2 1.9E+02 0.004 30.8 6.3 48 26-73 576-623 (790)
53 PF14992 TMCO5: TMCO5 family 24.1 2.4E+02 0.0052 26.2 6.3 55 26-83 149-220 (280)
54 PRK12902 secA preprotein trans 24.0 1.8E+02 0.0039 31.4 6.1 46 27-72 721-766 (939)
55 COG3883 Uncharacterized protei 23.7 2.4E+02 0.0051 26.0 6.1 34 59-92 99-134 (265)
56 PRK12906 secA preprotein trans 23.3 2E+02 0.0043 30.6 6.2 46 27-72 587-632 (796)
57 KOG3540 Beta amyloid precursor 23.2 69 0.0015 32.0 2.7 13 209-221 172-184 (615)
58 PRK13103 secA preprotein trans 23.0 2E+02 0.0043 31.1 6.2 46 27-72 624-669 (913)
59 PF03993 DUF349: Domain of Unk 22.2 2.8E+02 0.0062 19.4 5.4 39 33-71 3-41 (77)
60 COG0497 RecN ATPase involved i 22.1 3.9E+02 0.0084 27.3 7.8 29 44-72 347-375 (557)
61 CHL00122 secA preprotein trans 21.7 2.2E+02 0.0047 30.7 6.1 47 27-73 663-709 (870)
62 KOG3241 Uncharacterized conser 21.4 78 0.0017 27.6 2.4 18 46-64 49-66 (227)
63 PRK13104 secA preprotein trans 21.3 2.3E+02 0.005 30.6 6.3 46 27-72 620-665 (896)
64 PF03344 Daxx: Daxx Family; I 20.6 33 0.00072 35.8 0.0 6 98-103 301-306 (713)
65 PRK12899 secA preprotein trans 20.4 2.4E+02 0.0052 30.7 6.2 46 27-72 714-759 (970)
66 PRK01546 hypothetical protein; 20.2 2.1E+02 0.0046 21.5 4.2 41 19-60 2-42 (79)
No 1
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional
Probab=100.00 E-value=5.1e-60 Score=437.52 Aligned_cols=217 Identities=30% Similarity=0.591 Sum_probs=189.7
Q ss_pred hhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhh----------cchhhHHHHH
Q 024913 12 EEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIK----------SIPDFWLTAF 81 (260)
Q Consensus 12 ~~e~~~~~~~~v~~~i~~L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~ply~kR~eiI~----------~IP~FW~~vl 81 (260)
.++++..||+.++.++.+|+.||.++..|+.++++++++|+++|.++++|+|++|++||+ |||+||++||
T Consensus 28 ~~~~i~~Lp~~~~~rv~aL~~lQ~e~~~le~ef~~ev~~LE~kY~~~~~Ply~kR~eII~G~~~~e~~~~gIP~FWl~vL 107 (337)
T PTZ00007 28 DDEKLSHLTDEQRETLKKLQLLQKEFDDLEVEYNAELRKLRSKYEDLYNPIYDKRKEALVQNGGAEIGTPGLPQFWLTAM 107 (337)
T ss_pred ccchhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCcccccccCCcccHHHHHH
Confidence 346677999999999999999999999999999999999999999999999999999999 6999999999
Q ss_pred hhhhhhhcccChhhHHhhcCcceeEEEEccCCC-cceEEEEEecCCCcccCCeEEEEEEeeCCC---CC--ceeeecccc
Q 024913 82 ISHPALGELLSEEDQKIFRYLSSLEVEDFKDVK-SGYSITFNFSPNPYFEDNKLTKTFTFLDDD---GS--MKITATSIK 155 (260)
Q Consensus 82 ~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~-~~f~i~F~F~~NpyF~N~~LtK~~~~~~~~---g~--~~~~~t~I~ 155 (260)
+||+.|+.+|+++|++||+||++|+|++..+.. +||+|+|+|++||||+|++|||+|++.... |+ ..+++|+|+
T Consensus 108 ~Nh~~ls~~I~e~De~iL~~L~dI~ve~~~~~~~~gf~I~F~F~~NpyF~N~vLtK~y~~~~~d~~~~p~~~~~~~t~I~ 187 (337)
T PTZ00007 108 KNNNTLGSAIEEHDEPILSYLSDISCEYTEPNKQEGFILVFTFAPNPFFSNTVLTKTYHMKVLDGDDEPLLSNTVATEID 187 (337)
T ss_pred HcCccHhhhCCHHHHHHHHhhCceEEEEccCCCCCceEEEEEeCCCCCCCCCeEEEEEEeecCCCCCCceeecceeeece
Confidence 999999999999999999999999999876544 899999999999999999999999997422 22 246899999
Q ss_pred ccCCCCCCCccccccCCCC-----c----cccccccccccccccCCCccc----------------cchHHHHHHHhhcc
Q 024913 156 WKEGMGIPNGVNHEKKGNK-----R----PLAEESFFTWFSDTQEKDTID----------------GIQDEVAEIIKEDL 210 (260)
Q Consensus 156 Wk~gk~~t~~~~~~k~~~~-----r----~~~~~SFF~~F~~~~~~~~~e----------------~~~~ei~~~i~d~i 210 (260)
||+|++||++..++|++++ | +++..|||+||+++..+...+ +.+++||++|+++|
T Consensus 188 WK~GkdlT~k~v~kKqr~K~~~~~r~v~~~~~~~SFFnfF~p~~~p~~~~~e~~~e~~~ee~~~~l~~DyeiG~~ikd~I 267 (337)
T PTZ00007 188 WKQGKDVTKKVVTKKQRHKKTKETRTVTETVDRESFFNFFTSHEVPSDEELEKMSKHEIAELEMIVETDYEIGITIRDKL 267 (337)
T ss_pred eeCCCCchhhhcccccccccCCCceeeccCCCCCChHHhcCCCCCCcccccccccchhHHHHHHHHHHhHHHHHHHHHhc
Confidence 9999999998766544333 2 356799999999987654210 24679999999999
Q ss_pred ccchhhhcccCCCccccc
Q 024913 211 WPNPLTYFNNEADEEEFE 228 (260)
Q Consensus 211 ~p~al~yy~~~~~~~e~~ 228 (260)
||+||.||+|++.+++.+
T Consensus 268 IP~AV~yftGea~d~~~~ 285 (337)
T PTZ00007 268 IPYAVYWFLGEAIDEDSD 285 (337)
T ss_pred ccccHHhhCCCccccccc
Confidence 999999999998776654
No 2
>KOG1507 consensus Nucleosome assembly protein NAP-1 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.3e-57 Score=415.69 Aligned_cols=209 Identities=32% Similarity=0.636 Sum_probs=187.8
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhh-----------------------
Q 024913 14 ENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDII----------------------- 70 (260)
Q Consensus 14 e~~~~~~~~v~~~i~~L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~ply~kR~eiI----------------------- 70 (260)
+++..||+.|++||.+|++||.+...++.++.+++++|++||.++++|||.+|++||
T Consensus 66 ~~v~~Lp~~Vk~Rv~aLk~lQ~~~~~ie~~F~~e~~~LE~ky~~~yqplfdkR~eIi~g~~EP~eee~e~~~~~~de~~~ 145 (358)
T KOG1507|consen 66 DMVENLPPAVKNRVLALKNLQLECDEIEAKFQEEVHELERKYAKLYQPLFDKRREIINGEVEPTEEEIEWPEEIEDEGNL 145 (358)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhCCccCccccccccccccccccc
Confidence 889999999999999999999999999999999999999999999999999999998
Q ss_pred ------------hcchhhHHHHHhhhhhhhcccChhhHHhhcCcceeEEEEccCCCcceEEEEEecCCCcccCCeEEEEE
Q 024913 71 ------------KSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTF 138 (260)
Q Consensus 71 ------------~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~i~F~F~~NpyF~N~~LtK~~ 138 (260)
+|||+||++||+|+++|+.+|+++|++||+||+||++.+..++..||+|.|||.|||||+|++|||+|
T Consensus 146 ~e~~~~~~~~d~KGIP~FWLtvlkNvd~lse~I~~~DEpiLk~L~DI~~~~~~~~~~~fklEFhFd~N~YFtN~vLTKTY 225 (358)
T KOG1507|consen 146 AEDTEEAEKEDPKGIPDFWLTVLKNVDLLSEMITERDEPILKYLKDIRLKYSEDGQVGFKLEFHFDPNPYFTNEVLTKTY 225 (358)
T ss_pred ccchhhhccccccCCchHHHHHHhhhhhhhhhcccccHHHHHHHhhhheeeccCCccceEEEEEcCCCccccccceeeee
Confidence 37999999999999999999999999999999999999998867999999999999999999999999
Q ss_pred Eee---CCCCC------c--eeeeccccccCCCCCCCccccccCC---C--C----ccccccccccccccccCCCccc--
Q 024913 139 TFL---DDDGS------M--KITATSIKWKEGMGIPNGVNHEKKG---N--K----RPLAEESFFTWFSDTQEKDTID-- 196 (260)
Q Consensus 139 ~~~---~~~g~------~--~~~~t~I~Wk~gk~~t~~~~~~k~~---~--~----r~~~~~SFF~~F~~~~~~~~~e-- 196 (260)
++. ..+++ . .++||.|+|++|||||++.+.+|++ . . ++++..||||||+++..++..+
T Consensus 226 ~l~~~~D~~~P~~~~G~~i~~~~Gc~IdW~~gknlT~kti~kKq~~k~~~~~r~vtk~vp~eSFFNFFsPP~ipd~~d~D 305 (358)
T KOG1507|consen 226 FLKSEPDEDDPFAFDGPEIEKCEGCEIDWKPGKNLTVKTIKKKQRNKGTGQVRTVTKTVPNESFFNFFSPPEIPDEEDLD 305 (358)
T ss_pred eeeccCCCcCCcccCCceEEeeecCeeeccCCCccchhhhhhhccccCCCceeeeeecccchhhhhccCCCCCCcccccC
Confidence 998 32333 2 3799999999999999986655432 2 1 2468899999999998874221
Q ss_pred --------cchHHHHHHHhhccccchhhhcccCC
Q 024913 197 --------GIQDEVAEIIKEDLWPNPLTYFNNEA 222 (260)
Q Consensus 197 --------~~~~ei~~~i~d~i~p~al~yy~~~~ 222 (260)
+.+++||+.|++.|||.||.||+|++
T Consensus 306 ed~~~~~L~~DyeIG~~lr~~IIPrAV~~fTGea 339 (358)
T KOG1507|consen 306 EDDLEELLELDYEIGETLRDKIIPRAVLWFTGEA 339 (358)
T ss_pred chHHHHHHHhhHHHHHHHHhhhhhheeeeecccc
Confidence 24689999999999999999999999
No 3
>PTZ00008 (NAP-S) nucleosome assembly protein-S; Provisional
Probab=100.00 E-value=9.6e-54 Score=367.81 Aligned_cols=180 Identities=29% Similarity=0.595 Sum_probs=160.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhcchhhHHHHHhhhhhhhcccChhhHHhhcCcceeEEEEccCCCcceE
Q 024913 39 KINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYS 118 (260)
Q Consensus 39 ~le~~~~~e~~~le~ky~k~~~ply~kR~eiI~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~ 118 (260)
+|+.++.+++++|+++|.++++|+|++|++||+|||+||++||+|||.++ +|++.|+++|+||+||+|+...++..||+
T Consensus 2 ~l~~e~~~e~~~le~ky~~~~~p~y~kR~~II~gIP~FW~~vl~n~~~~~-~I~~~D~~~L~~L~dI~ve~~~~~~~~f~ 80 (185)
T PTZ00008 2 ELDEECAKEQMNIQRQFDEKKKPLFEKRQEIIEKIPGFWADTLRRHPALS-YLVPEDIDILEHLKKIDLEDNLDNNGSYK 80 (185)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhcCccHHHHHHHcCcccc-ccCHHHHHHHHHhCceEEEEeecCCCCEE
Confidence 47889999999999999999999999999999999999999999999999 99999999999999999997555578999
Q ss_pred EEEEecC--CCcccCCeEEEEEEeeCCCCCceeeeccccccCCCCCCCccccccCCCCccccccccccccccccCCCccc
Q 024913 119 ITFNFSP--NPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEESFFTWFSDTQEKDTID 196 (260)
Q Consensus 119 i~F~F~~--NpyF~N~~LtK~~~~~~~~g~~~~~~t~I~Wk~gk~~t~~~~~~k~~~~r~~~~~SFF~~F~~~~~~~~~e 196 (260)
|+|+|.+ ||||+|++|||+|++.. ++..++++|+|+||+|+++|.+..+++....+..+..|||+||+++..+
T Consensus 81 i~F~F~~~~N~yF~n~~LtK~y~~~~-~~~~~~~~t~I~Wk~gkn~t~~~~kk~~~~~~~~~~~SFF~fF~~~~~~---- 155 (185)
T PTZ00008 81 ITLIFDEKAKEFMEPLVLVKHVIFKN-NQEKVVEVTKIKWKEGKSPIAAAEKARSDLDDECIVWSIFEWFTEEEWQ---- 155 (185)
T ss_pred EEEEECCCCCCCcCCCEEEEEEEEec-CCCceeeeeecccCCCCCcceeeeeccCccccCCCCCChhhcCCCCccc----
Confidence 9999965 89999999999999987 6667889999999999999988665433233456779999999987543
Q ss_pred cchHHHHHHHhhccccchhhhcccCCCcc
Q 024913 197 GIQDEVAEIIKEDLWPNPLTYFNNEADEE 225 (260)
Q Consensus 197 ~~~~ei~~~i~d~i~p~al~yy~~~~~~~ 225 (260)
.+++||++|+++|||+||.||+|++..+
T Consensus 156 -~~~eIg~~i~e~i~P~av~yy~ge~~~~ 183 (185)
T PTZ00008 156 -DRPDVGEIIRREIWHAPLLYYLDTVSID 183 (185)
T ss_pred -CcHHHHHHHHHhhccchHHhhCCccccc
Confidence 4799999999999999999999977544
No 4
>PF00956 NAP: Nucleosome assembly protein (NAP); InterPro: IPR002164 It is thought that NAPs act as histone chaperones, shuttling both core and linker histones from their site of synthesis in the cytoplasm to the nucleus. The proteins may be involved in regulating gene expression and therefore cellular differentiation [, ]. The centrosomal protein c-Nap1, also known as Cep250, has been implicated in the cell-cycle-regulated cohesion of microtubule-organizing centres. This 281 kDa protein consists mainly of domains predicted to form coiled coil structures. The C-terminal region defines a novel histone-binding domain that is responsible for targeting CNAP1, and possibly condensin, to mitotic chromosomes []. During interphase, C-Nap1 localizes to the proximal ends of both parental centrioles, but it dissociates from these structures at the onset of mitosis. Re-association with centrioles then occurs in late telophase or at the very beginning of G1 phase, when daughter cells are still connected by post-mitotic bridges. Electron microscopic studies performed on isolated centrosomes suggest that a proteinaceous linker connects parental centrioles and C-Nap1 may be part of a linker structure that assures the cohesion of duplicated centrosomes during interphase, but that is dismantled upon centrosome separation at the onset of mitosis []. ; GO: 0006334 nucleosome assembly, 0005634 nucleus; PDB: 2E50_Q 2Z2R_A 2AYU_A 3Q66_A 3C9B_A 3Q68_B 3Q33_B 2ZD7_B 3DM7_A 3C9D_A ....
Probab=100.00 E-value=4.3e-53 Score=378.29 Aligned_cols=198 Identities=41% Similarity=0.783 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhc-------------------chhhHHHHHhhh
Q 024913 24 VLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS-------------------IPDFWLTAFISH 84 (260)
Q Consensus 24 ~~~i~~L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~ply~kR~eiI~~-------------------IP~FW~~vl~n~ 84 (260)
++++.+|+.||.++..++.++.+++++|+++|+++++|+|++|++||+| ||+||++||+||
T Consensus 1 ~~~i~~L~~~q~~~~~l~~~~~~e~~~le~ky~~~~~pl~~kR~~ii~g~~~~~~~~~~~~~~~~~~gIP~FW~~vl~n~ 80 (244)
T PF00956_consen 1 KQRIEALKKLQEELDELEKEFEEEIHELERKYNKLYKPLYEKRREIINGKREPTEIEWEERQEEKPKGIPGFWLTVLKNH 80 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS---HHHH-----SSSTTSTTHHHHHHHTS
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccccccccccccchhhccccCCCCccccccccC
Confidence 5789999999999999999999999999999999999999999999999 999999999999
Q ss_pred hhhhcccChhhHHhhcCcceeEEEEccCCCcceEEEEEecCCCcccCCeEEEEEEeeCCCCC------ceeeeccccccC
Q 024913 85 PALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGS------MKITATSIKWKE 158 (260)
Q Consensus 85 ~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~i~F~F~~NpyF~N~~LtK~~~~~~~~g~------~~~~~t~I~Wk~ 158 (260)
+.++.+|++.|.+||+||+||+|+...++.++|+|+|+|++||||+|++|+|+|++.. .+. .++++|+|+||+
T Consensus 81 ~~~~~~i~~~D~~iL~~L~dI~v~~~~~~~~~f~l~F~F~~NpyF~n~~L~K~~~~~~-~~~~~~~~~~~~~~t~I~Wk~ 159 (244)
T PF00956_consen 81 PLLAELISEEDEEILSYLTDIRVEYFEDNPRGFKLTFHFKPNPYFSNTVLTKEYYLKK-EGDEEDPDELKSESTPIDWKP 159 (244)
T ss_dssp HHHHTTSSHHHHHHHTTEEEEEEEECCSSTTEEEEEEEECSTSSBSESEEEEEEEEES-SSSTTTT-EEEEEE---EBST
T ss_pred chhhcccccccHHHHHhhhheEEEecccCCcceEEEEEECCCCcccCCEEEEEEEEec-cCCCCCCCcceeeeecccccC
Confidence 9999999999999999999999999887789999999999999999999999999988 443 789999999999
Q ss_pred CCCCCCccccccCCCC---------ccccccccccccccccCCCcc-----c-------cchHHHHHHHhhccccchhhh
Q 024913 159 GMGIPNGVNHEKKGNK---------RPLAEESFFTWFSDTQEKDTI-----D-------GIQDEVAEIIKEDLWPNPLTY 217 (260)
Q Consensus 159 gk~~t~~~~~~k~~~~---------r~~~~~SFF~~F~~~~~~~~~-----e-------~~~~ei~~~i~d~i~p~al~y 217 (260)
|+++|.+...+|++++ .....+|||+||++...++.. + ..+++||.+|+++|||+||.|
T Consensus 160 gkd~t~~~~~~k~~~k~~~~~~~~~~~~~~~SFF~~F~~~~~~~~~~~e~~~~~~~~~~~~d~ei~~~i~d~i~P~av~y 239 (244)
T PF00956_consen 160 GKDLTKKEVKKKQKNKGTKQVRTITKEVPTESFFNFFSPPKLPDEEDDEEEDEDEEEEIEDDFEIGEIIKDDIIPNAVKY 239 (244)
T ss_dssp TTCTTCCCCECECCSCCCH-ECCCCCCCC--SGGGGSS-B-S--TTTSSSTCHHHHHHHHHHHHHHHHHHHTCCCHHHHH
T ss_pred CCCccchhhhhcccccccccccceeecccCcchhhhcccCCCCcccccccchhhHHHHhhccHHHHHHHHhheechHHHH
Confidence 9999998766533222 235668999999976544211 0 247899999999999999999
Q ss_pred cccCC
Q 024913 218 FNNEA 222 (260)
Q Consensus 218 y~~~~ 222 (260)
|+|+|
T Consensus 240 y~gea 244 (244)
T PF00956_consen 240 YTGEA 244 (244)
T ss_dssp HHTCT
T ss_pred hCCCC
Confidence 99986
No 5
>KOG1508 consensus DNA replication factor/protein phosphatase inhibitor SET/SPR-2 [Replication, recombination and repair]
Probab=100.00 E-value=9.2e-35 Score=262.08 Aligned_cols=230 Identities=45% Similarity=0.820 Sum_probs=200.1
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhcchhhHHHHHhhhhhhhcccChh
Q 024913 15 NAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEE 94 (260)
Q Consensus 15 ~~~~~~~~v~~~i~~L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~ply~kR~eiI~~IP~FW~~vl~n~~~l~~~i~~~ 94 (260)
-+...+..++.+++.|++||.+++.++.++.+++++|+++|...++|+|++|+.||+.||+||.+++.|||.++.+|...
T Consensus 22 ~l~~~~~~~~~~~~~l~~i~~e~~~~~~~a~~~~l~l~~~~~~~r~p~~~~r~~ii~~i~~fw~~~~~~hp~~~~~i~~~ 101 (260)
T KOG1508|consen 22 HLSRRGREIEEALETLENIQHELDRMNAKAEVEVLKLEQKFNRFRRPVYEKRRELIKEIPNFWVTAFLNHPTLSEWIPEE 101 (260)
T ss_pred ccccchhHHHhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhCchhhhhhHHHhhcccceeEEEecCCcHhhhhhhh
Confidence 34557789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhcCcceeEEEEccCCCcceEEEEEecCCCcccCCeEEEEEEeeCCCCCceeeeccccccCCCCCCCccccccCCCC
Q 024913 95 DQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNK 174 (260)
Q Consensus 95 D~~iL~~L~dI~Ve~~~d~~~~f~i~F~F~~NpyF~N~~LtK~~~~~~~~g~~~~~~t~I~Wk~gk~~t~~~~~~k~~~~ 174 (260)
|.+++.||.++.|+.+.+...||++.|+|.+|+||+|.+++|+|++.. .|.+.+.+|+|.|+.|+.+.+.......+++
T Consensus 102 ~~e~~~~l~~~~v~e~~~~~sg~~~~~~f~~ney~~~~~~~ke~~~~~-~~~~~s~~t~i~w~~~~~~~~~~~~~~~~~k 180 (260)
T KOG1508|consen 102 DEEALHYLHNLEVEELGDIKSGYRIKFSFEINEYFTNDLLVKEFQYKE-SGKPSSESTPISWKEGKPLPNPVKRGELKNK 180 (260)
T ss_pred hhhhhccchHHHHHHhccccccCeeeeeeccchhcccchhceeeeeec-ccCcccccccccccCCCCCcccccccccccc
Confidence 999999999999999988899999999999999999999999999998 7888899999999999998765442222233
Q ss_pred ccccccccccccccccCCCccccchHHHHHHHhhccccchhhhcccCCCcccccCCcCCCCCCCC-CCCCCCCCCCC
Q 024913 175 RPLAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNNEADEEEFEGDEEGKEDDDS-EDDEDDQEEDD 250 (260)
Q Consensus 175 r~~~~~SFF~~F~~~~~~~~~e~~~~ei~~~i~d~i~p~al~yy~~~~~~~e~~~~~~~~~~~~~-~~~~~~~~~~~ 250 (260)
+.....|||.||+.+..+. ..+|+++|++.+||++++||+....+....+++.|.-.++. ++++..++.++
T Consensus 181 ~~~~~~s~f~wf~~~~~~~-----~d~i~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 252 (260)
T KOG1508|consen 181 NGDGPKSFFEWFSDTSLKE-----FDEILEIIKDELWPNPLQYYLEPDGEEASEEDESGTSDEGEPEPDEGSQERAD 252 (260)
T ss_pred cCcccccHHHHHHhccCCC-----ccchhhhhhcccccchhhhhcccccccccccCCCCCCccCCCCCCCCCccccc
Confidence 4456689999999998764 34899999999999999999999888887777776555554 44444444433
No 6
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=94.71 E-value=0.13 Score=35.10 Aligned_cols=37 Identities=27% Similarity=0.567 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhh
Q 024913 30 LQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKR 66 (260)
Q Consensus 30 L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~ply~kR 66 (260)
+..||..+..|..++.+|+-+|.+.|..+++|+...-
T Consensus 10 ~~eL~~rl~~LD~~ME~Eieelr~RY~~KRqPIldAi 46 (49)
T PF11629_consen 10 YEELQQRLASLDPEMEQEIEELRQRYQAKRQPILDAI 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 4568889999999999999999999999999998653
No 7
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=92.24 E-value=0.04 Score=42.70 Aligned_cols=6 Identities=50% Similarity=0.678 Sum_probs=0.0
Q ss_pred cccCCc
Q 024913 226 EFEGDE 231 (260)
Q Consensus 226 e~~~~~ 231 (260)
+.+.+|
T Consensus 13 e~dsdE 18 (101)
T PF09026_consen 13 ESDSDE 18 (101)
T ss_dssp ------
T ss_pred cccccc
Confidence 333333
No 8
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=91.90 E-value=0.81 Score=37.97 Aligned_cols=56 Identities=18% Similarity=0.374 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhcchhh
Q 024913 21 SELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDF 76 (260)
Q Consensus 21 ~~v~~~i~~L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~ply~kR~eiI~~IP~F 76 (260)
.++-.+|..+..||.++..++..+..++.++...|.....|+-.+...+-..|-.|
T Consensus 3 ~~a~~al~ki~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~y 58 (149)
T PF07352_consen 3 EEADWALRKIAELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGLLQAY 58 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677899999999999999999999999999999999999998887776666555
No 9
>KOG1508 consensus DNA replication factor/protein phosphatase inhibitor SET/SPR-2 [Replication, recombination and repair]
Probab=89.37 E-value=0.01 Score=54.04 Aligned_cols=143 Identities=13% Similarity=0.066 Sum_probs=91.1
Q ss_pred HHHHHHhhhhhHHhhhhhhhcchhhHHHHHhhhhhhhcccChhhHHhhcCcceeEEEEccCCCcceEEEEEecCCCcccC
Q 024913 52 EQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFED 131 (260)
Q Consensus 52 e~ky~k~~~ply~kR~eiI~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~i~F~F~~NpyF~N 131 (260)
..+-.... +++.+|...++.+++||..|-.....+. -.....+| ...++-..|..|+|+++
T Consensus 13 ~e~~e~~~-~~l~~~~~~~~~~~~~l~~i~~e~~~~~---~~a~~~~l---------------~l~~~~~~~r~p~~~~r 73 (260)
T KOG1508|consen 13 DEKMERRK-EHLSRRGREIEEALETLENIQHELDRMN---AKAEVEVL---------------KLEQKFNRFRRPVYEKR 73 (260)
T ss_pred cccccccc-cccccchhHHHhhhHHHHHHHHHhhhhh---hhhHHHHH---------------HHHHHHHhhhCchhhhh
Confidence 33344445 8999999999999999987644333222 12222222 22233445689999999
Q ss_pred CeEEEEEEeeCCCCC-ceeeeccccccCCCCCCCccccccCCCCccccccccccccccccCCCccccchHHHHHHHhhcc
Q 024913 132 NKLTKTFTFLDDDGS-MKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDL 210 (260)
Q Consensus 132 ~~LtK~~~~~~~~g~-~~~~~t~I~Wk~gk~~t~~~~~~k~~~~r~~~~~SFF~~F~~~~~~~~~e~~~~ei~~~i~d~i 210 (260)
..|+|+|.-.- +. ...+++.++|-.+.+....... .......|+++++..... ..++++..+.+.+
T Consensus 74 ~~ii~~i~~fw--~~~~~~hp~~~~~i~~~~~e~~~~l------~~~~v~e~~~~~sg~~~~-----~~f~~ney~~~~~ 140 (260)
T KOG1508|consen 74 RELIKEIPNFW--VTAFLNHPTLSEWIPEEDEEALHYL------HNLEVEELGDIKSGYRIK-----FSFEINEYFTNDL 140 (260)
T ss_pred hHHHhhcccce--eEEEecCCcHhhhhhhhhhhhhccc------hHHHHHHhccccccCeee-----eeeccchhcccch
Confidence 99999965211 11 2358889999887765432110 012335577777776643 3466778888999
Q ss_pred ccchhhhcccCCCccc
Q 024913 211 WPNPLTYFNNEADEEE 226 (260)
Q Consensus 211 ~p~al~yy~~~~~~~e 226 (260)
|-+.++|+....+...
T Consensus 141 ~~ke~~~~~~~~~~s~ 156 (260)
T KOG1508|consen 141 LVKEFQYKESGKPSSE 156 (260)
T ss_pred hceeeeeecccCcccc
Confidence 9999999988664433
No 10
>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]
Probab=88.52 E-value=1.5 Score=36.49 Aligned_cols=66 Identities=18% Similarity=0.342 Sum_probs=56.1
Q ss_pred hhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhcchhhH
Q 024913 12 EEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFW 77 (260)
Q Consensus 12 ~~e~~~~~~~~v~~~i~~L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~ply~kR~eiI~~IP~FW 77 (260)
.......--.+|+..|..|-+||.+...|+.++-.++.+++..|..+..|+-..-..+.++|..|.
T Consensus 9 ~A~~a~q~~eeV~~~Ir~iGDlqRE~~RLeTemnDk~aai~e~Yapq~~~lk~EI~~L~k~vq~yC 74 (170)
T COG4396 9 PAIEAAQDKEEVTAFIRQIGDLQREVKRLETEMNDKKAAIEEEYAPQAAPLKAEIMSLTKRVQAYC 74 (170)
T ss_pred hHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhcchHhHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 333334445679999999999999999999999999999999999999999988888778887764
No 11
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=85.47 E-value=0.78 Score=41.87 Aligned_cols=9 Identities=11% Similarity=0.132 Sum_probs=4.7
Q ss_pred CCcceEEEE
Q 024913 113 VKSGYSITF 121 (260)
Q Consensus 113 ~~~~f~i~F 121 (260)
..+.|+-.|
T Consensus 139 GGrif~Csf 147 (314)
T PF06524_consen 139 GGRIFKCSF 147 (314)
T ss_pred CCeEEEeec
Confidence 345565544
No 12
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=82.88 E-value=0.9 Score=47.44 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024913 25 LSIEKLQEIQDELEKINEEASE 46 (260)
Q Consensus 25 ~~i~~L~~lQ~e~~~le~~~~~ 46 (260)
..+..++.++.-+..+..+...
T Consensus 341 d~~t~~k~i~~il~~~~~~~l~ 362 (784)
T PF04931_consen 341 DQITKTKTIEQILLSLDVDGLK 362 (784)
T ss_pred HHHHHHHHHHHHHhccchHHHH
Confidence 3344555555444444444333
No 13
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=74.72 E-value=1.8 Score=45.82 Aligned_cols=7 Identities=29% Similarity=0.326 Sum_probs=3.0
Q ss_pred ccCCeEE
Q 024913 129 FEDNKLT 135 (260)
Q Consensus 129 F~N~~Lt 135 (260)
|.|-+||
T Consensus 1246 lndGvLW 1252 (1516)
T KOG1832|consen 1246 LNDGVLW 1252 (1516)
T ss_pred eeCceee
Confidence 3444444
No 14
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=70.07 E-value=2.8 Score=44.43 Aligned_cols=8 Identities=0% Similarity=0.160 Sum_probs=3.0
Q ss_pred CcccCCeE
Q 024913 127 PYFEDNKL 134 (260)
Q Consensus 127 pyF~N~~L 134 (260)
.-.=|+.|
T Consensus 1280 eVIINSEI 1287 (1516)
T KOG1832|consen 1280 EVIINSEI 1287 (1516)
T ss_pred eEEeechh
Confidence 33334333
No 15
>PF07516 SecA_SW: SecA Wing and Scaffold domain; InterPro: IPR011116 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner. This domain is composed of two C-terminal alpha helical subdomains: the wing and scaffold subdomains.; GO: 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 2IPC_D 3JUX_A 3DIN_B ....
Probab=67.18 E-value=19 Score=31.43 Aligned_cols=45 Identities=22% Similarity=0.459 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhc
Q 024913 28 EKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (260)
Q Consensus 28 ~~L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~ply~kR~eiI~~ 72 (260)
.++...|+.+...+-...+-+++...--+.+++-+|..|+.||.+
T Consensus 9 ~~Ie~aQkkvE~~nf~~Rk~lleyD~Vl~~QR~~IY~~R~~iL~~ 53 (214)
T PF07516_consen 9 KSIEKAQKKVEGRNFDIRKNLLEYDDVLNQQRKVIYKQRDKILEG 53 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456778999999999999999999999999999999999999975
No 16
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=65.04 E-value=4.9 Score=44.12 Aligned_cols=16 Identities=13% Similarity=0.347 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhhhhhH
Q 024913 48 VLEVEQKYSEIRKPVY 63 (260)
Q Consensus 48 ~~~le~ky~k~~~ply 63 (260)
..+|+++|.+.+..+|
T Consensus 1443 ~falenkiLkd~Sslf 1458 (3015)
T KOG0943|consen 1443 LFALENKILKDQSSLF 1458 (3015)
T ss_pred hHHHHHHHHhhhhhhh
Confidence 3566777776666555
No 17
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=63.08 E-value=11 Score=33.83 Aligned_cols=15 Identities=60% Similarity=1.059 Sum_probs=8.3
Q ss_pred cccCCCcccccCCcC
Q 024913 218 FNNEADEEEFEGDEE 232 (260)
Q Consensus 218 y~~~~~~~e~~~~~~ 232 (260)
|.....+++|...++
T Consensus 35 f~Eee~D~ef~~~~~ 49 (240)
T PF05764_consen 35 FQEEEDDEEFESEEE 49 (240)
T ss_pred ccccCCCccccCCCc
Confidence 555555555555544
No 18
>PHA02608 67 prohead core protein; Provisional
Probab=60.83 E-value=5.2 Score=29.87 Aligned_cols=7 Identities=71% Similarity=1.208 Sum_probs=2.6
Q ss_pred CCCCCCC
Q 024913 251 DDEDGDD 257 (260)
Q Consensus 251 ~~~~~~~ 257 (260)
+++|.+|
T Consensus 73 ~~dDedD 79 (80)
T PHA02608 73 DDDDEDD 79 (80)
T ss_pred ccccccc
Confidence 3333333
No 19
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=56.72 E-value=8 Score=39.79 Aligned_cols=30 Identities=27% Similarity=0.414 Sum_probs=20.4
Q ss_pred ccccchhhhcccCCCcccccCCcCCCCCCC
Q 024913 209 DLWPNPLTYFNNEADEEEFEGDEEGKEDDD 238 (260)
Q Consensus 209 ~i~p~al~yy~~~~~~~e~~~~~~~~~~~~ 238 (260)
.|.-||+.-|.+....+++.+.|+++|.+|
T Consensus 878 tItVNPme~~e~~gs~ee~~e~EeeeE~e~ 907 (952)
T KOG1834|consen 878 TITVNPMEDYEKGGSIEEESEEEEEEETED 907 (952)
T ss_pred eEEecchHhcccCCcccccccccccccccc
Confidence 577899999999766666655555444444
No 20
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=54.32 E-value=10 Score=40.24 Aligned_cols=6 Identities=17% Similarity=0.185 Sum_probs=2.5
Q ss_pred chhhHH
Q 024913 73 IPDFWL 78 (260)
Q Consensus 73 IP~FW~ 78 (260)
+-.|=.
T Consensus 89 l~Rf~~ 94 (840)
T PF04147_consen 89 LERFTR 94 (840)
T ss_pred HHHHHH
Confidence 344433
No 21
>PF11705 RNA_pol_3_Rpc31: DNA-directed RNA polymerase III subunit Rpc31; InterPro: IPR024661 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA polymerase III-specific, and form the functionally distinct groups: (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in Saccharomyces cerevisiae and Homo sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain []. This entry represents the Rpc31 subunit.
Probab=52.25 E-value=13 Score=33.04 Aligned_cols=9 Identities=22% Similarity=0.571 Sum_probs=4.3
Q ss_pred hhhhHHhhh
Q 024913 59 RKPVYDKRN 67 (260)
Q Consensus 59 ~~ply~kR~ 67 (260)
.-|+|-...
T Consensus 67 ~sPyy~~~~ 75 (233)
T PF11705_consen 67 DSPYYTESR 75 (233)
T ss_pred hCCCccccc
Confidence 345554443
No 22
>COG1507 Uncharacterized conserved protein [Function unknown]
Probab=52.14 E-value=57 Score=27.50 Aligned_cols=67 Identities=18% Similarity=0.323 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhh--------cchhhHHHHHhhhhhhhccc
Q 024913 20 DSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIK--------SIPDFWLTAFISHPALGELL 91 (260)
Q Consensus 20 ~~~v~~~i~~L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~ply~kR~eiI~--------~IP~FW~~vl~n~~~l~~~i 91 (260)
.|.+.++...|+. |-=+..++.++.+. -+|...|.+.+..+..+|++|.. |+|+| ..+| |-.|+..|
T Consensus 56 ~P~L~kaaSrLEs-~gymkem~erl~~d-~eL~~~~~raHe~~lkkR~~i~~~~t~~~~gGm~D~-vkCl--hvlia~~l 130 (167)
T COG1507 56 HPVLTKAASRLES-TGYMKEMTERLGQD-EELRAFYRRAHESYLKKRDAIEPLGTTVSGGGMPDR-VKCL--HVLIAHSL 130 (167)
T ss_pred ChHHHHHHHHHHH-hhHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHhhcccCCeecCCCcchH-HHHH--HHHHHHHh
Confidence 3677777777653 22233333333222 36888999999999999999984 78998 3333 44444443
No 23
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=52.08 E-value=4 Score=34.13 Aligned_cols=38 Identities=11% Similarity=0.157 Sum_probs=18.6
Q ss_pred EEEecC--CCcccCCeEEEEEEeeCC--CCCceeeecccccc
Q 024913 120 TFNFSP--NPYFEDNKLTKTFTFLDD--DGSMKITATSIKWK 157 (260)
Q Consensus 120 ~F~F~~--NpyF~N~~LtK~~~~~~~--~g~~~~~~t~I~Wk 157 (260)
.++|++ |.--..+..-+...+... +..-+++..+++++
T Consensus 17 ~~~f~~~~~d~~~h~L~L~~v~Lga~AKdE~~vVe~e~~~~e 58 (149)
T PF03066_consen 17 DYTFKVDDNDENEHQLSLRQVCLGAGAKDELNVVEVEAMNYE 58 (149)
T ss_dssp EEEE-TTSSSSSCEEEEEEEEEE-TTS-SSEEEEEEEEEBTT
T ss_pred eEEEeCCCCCCcccEEEEEEeecCCCccCceeEEEEEeccCC
Confidence 466766 555555555666777542 22223455555553
No 24
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=46.46 E-value=14 Score=40.79 Aligned_cols=7 Identities=43% Similarity=1.270 Sum_probs=3.1
Q ss_pred hHHHHHh
Q 024913 76 FWLTAFI 82 (260)
Q Consensus 76 FW~~vl~ 82 (260)
.|+.+|.
T Consensus 1481 mwl~~Ft 1487 (3015)
T KOG0943|consen 1481 MWLDCFT 1487 (3015)
T ss_pred HHHHHHH
Confidence 4444443
No 25
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.33 E-value=1.3e+02 Score=22.23 Aligned_cols=67 Identities=18% Similarity=0.365 Sum_probs=42.4
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhcchhhHHHHHh
Q 024913 14 ENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFI 82 (260)
Q Consensus 14 e~~~~~~~~v~~~i~~L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~ply~kR~eiI~~IP~FW~~vl~ 82 (260)
|....+...++++++.+.-||.++..+-.+... +.-+..-....+.-++++++-++.-..=|.--++
T Consensus 4 Ev~ekLE~KiqqAvdTI~LLQmEieELKEknn~--l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlr 70 (79)
T COG3074 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNS--LSQEVQNAQHQREALERENEQLKEEQNGWQERLR 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567789999999999999999888765431 1112222233344556666666666666765544
No 26
>KOG3891 consensus Secretory vesicle-associated protein ICA69, contains Arfaptin domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.52 E-value=71 Score=30.64 Aligned_cols=87 Identities=17% Similarity=0.281 Sum_probs=58.0
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhh--------cchhhHHHHHhhhhhhh
Q 024913 17 EQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIK--------SIPDFWLTAFISHPALG 88 (260)
Q Consensus 17 ~~~~~~v~~~i~~L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~ply~kR~eiI~--------~IP~FW~~vl~n~~~l~ 88 (260)
..|+|.+-+.+++....|......-.-+.+=-+.+-+|-.- +=.-|.-+++ .+-+||..+-+....|+
T Consensus 174 qELDPdt~k~meKFRkaQt~Vr~aK~nfDklkmD~~QKVDL----L~AsRcNllSh~Lt~YqteL~~f~~Kta~tf~ti~ 249 (436)
T KOG3891|consen 174 QELDPDTDKQMEKFRKAQTQVRSAKENFDKLKMDVCQKVDL----LGASRCNLLSHVLTTYQTELLEFWSKTARTFETIH 249 (436)
T ss_pred hhcCcchhhHHHHHHHHHHHHHHHHhccchhhhHHHHHHhH----hhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888999999988888766655554433333333331 2233433332 46899999887777776
Q ss_pred ccc---ChhhHHhhcCcceeEE
Q 024913 89 ELL---SEEDQKIFRYLSSLEV 107 (260)
Q Consensus 89 ~~i---~~~D~~iL~~L~dI~V 107 (260)
.-+ .+.|..||++|.+=.-
T Consensus 250 ea~~~y~~YdF~~Lk~L~~~~~ 271 (436)
T KOG3891|consen 250 EACIGYNPYDFEILKHLQDGTK 271 (436)
T ss_pred HHhcCCCccchHHHHHhccCCC
Confidence 543 5899999999986543
No 27
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=41.14 E-value=17 Score=38.04 Aligned_cols=23 Identities=17% Similarity=0.416 Sum_probs=12.1
Q ss_pred CcceeEEEEccC---CCcceEEEEEe
Q 024913 101 YLSSLEVEDFKD---VKSGYSITFNF 123 (260)
Q Consensus 101 ~L~dI~Ve~~~d---~~~~f~i~F~F 123 (260)
.|.+|++..++- ...+|-+.|.|
T Consensus 782 tL~eVEiv~~ERV~f~lKnfDmvfIf 807 (960)
T KOG1189|consen 782 TLEEVEIVNLERVQFGLKNFDMVFIF 807 (960)
T ss_pred eecceeeeeeeeeeeccccceEEEEe
Confidence 555665554431 13456666666
No 28
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=40.79 E-value=94 Score=23.58 Aligned_cols=56 Identities=9% Similarity=0.356 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhcchh
Q 024913 20 DSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPD 75 (260)
Q Consensus 20 ~~~v~~~i~~L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~ply~kR~eiI~~IP~ 75 (260)
-........++..++..+..++.++......|...|..++.-+-+++..++..|..
T Consensus 13 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~ 68 (127)
T smart00502 13 RKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEE 68 (127)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666667777777788888888889999999999888888888876544
No 29
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=40.09 E-value=1.3e+02 Score=22.53 Aligned_cols=31 Identities=23% Similarity=0.436 Sum_probs=26.2
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 024913 14 ENAEQIDSELVLSIEKLQEIQDELEKINEEA 44 (260)
Q Consensus 14 e~~~~~~~~v~~~i~~L~~lQ~e~~~le~~~ 44 (260)
|....|...|+++++.+.-||.+++.+..+.
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKekn 34 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKN 34 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778899999999999999999887764
No 30
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=39.67 E-value=51 Score=24.82 Aligned_cols=65 Identities=20% Similarity=0.317 Sum_probs=42.0
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hHHhhhhhhhcchhhHHHHHh
Q 024913 14 ENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKP---VYDKRNDIIKSIPDFWLTAFI 82 (260)
Q Consensus 14 e~~~~~~~~v~~~i~~L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~p---ly~kR~eiI~~IP~FW~~vl~ 82 (260)
+.+..+|.+++..+..+..+..+...+-.+ +.+.-.+|.+.... -=.++..+++.|..=+..++.
T Consensus 8 d~~~~LP~el~r~l~~irelD~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~ 75 (105)
T PF12998_consen 8 DSLENLPAELQRNLTLIRELDAKSQDLLEE----LDQQIQKFIKNHGSPSLSPEKRRELLKEIQEEYERALE 75 (105)
T ss_dssp TSGGGHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHTCTTS--S-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHChHHHHHHHHHHHHhhhhHHHHHHH----HHHHHHHHHhhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999998888775555433 33444444443322 112677777777777766654
No 31
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=36.53 E-value=1.7e+02 Score=29.37 Aligned_cols=68 Identities=22% Similarity=0.321 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH----hhhh---hhhcchhhHHHHHhhhhhhh
Q 024913 21 SELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYD----KRND---IIKSIPDFWLTAFISHPALG 88 (260)
Q Consensus 21 ~~v~~~i~~L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~ply~----kR~e---iI~~IP~FW~~vl~n~~~l~ 88 (260)
|.+++.+.++.+.+.++.+-+.++.+-....+.+|.+.++-+=- =|.+ +++.+|.++..+......+.
T Consensus 127 P~lkKqi~k~~q~~~d~~kk~~e~~~~~~~~~~~~~~~c~~lGI~G~nir~ELl~l~~~LP~~~~~i~~~i~~l~ 201 (507)
T PF05600_consen 127 PALKKQIAKCQQQLEDLDKKEEELQRSAAEARERYKKACKQLGIKGENIREELLELVKELPSLFDEIVEAISDLQ 201 (507)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 66888899999999999999999999999999999988865421 1344 44678999888776554443
No 32
>PRK14082 hypothetical protein; Provisional
Probab=35.88 E-value=39 Score=24.41 Aligned_cols=10 Identities=30% Similarity=0.919 Sum_probs=7.4
Q ss_pred hhcchhhHHH
Q 024913 70 IKSIPDFWLT 79 (260)
Q Consensus 70 I~~IP~FW~~ 79 (260)
...+||||--
T Consensus 54 ~~e~PGF~ef 63 (65)
T PRK14082 54 CQEVPGFWEF 63 (65)
T ss_pred cccCCcHHHh
Confidence 3578999953
No 33
>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]
Probab=35.59 E-value=51 Score=31.41 Aligned_cols=38 Identities=26% Similarity=0.513 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhh
Q 024913 29 KLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKR 66 (260)
Q Consensus 29 ~L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~ply~kR 66 (260)
.|..||..+-.+.-.+.+++.+|.++|..+++|+|...
T Consensus 455 ~~e~Lq~rl~alDpmme~eieelrq~y~skrqpIldai 492 (502)
T KOG0574|consen 455 TLEELQMRLKALDPMMEREIEELRQRYTSKRQPILDAI 492 (502)
T ss_pred cHHHHHHHHHhcCHHHHHHHHHHHHHHhhccccHHHHh
Confidence 57788999999999999999999999999999999654
No 34
>KOG2652 consensus RNA polymerase II transcription initiation factor TFIIA, large chain [Transcription]
Probab=32.83 E-value=27 Score=33.08 Aligned_cols=17 Identities=12% Similarity=0.085 Sum_probs=9.1
Q ss_pred EEecCCCcccCCeEEEE
Q 024913 121 FNFSPNPYFEDNKLTKT 137 (260)
Q Consensus 121 F~F~~NpyF~N~~LtK~ 137 (260)
-+|.|+.++.|+..+-.
T Consensus 139 p~~~p~s~~~~~q~s~~ 155 (348)
T KOG2652|consen 139 PALSPWSLQLNTQKSQQ 155 (348)
T ss_pred cCcCccccccccccccc
Confidence 34555666666555443
No 35
>PF07324 DGCR6: DiGeorge syndrome critical region 6 (DGCR6) protein; InterPro: IPR010849 This family contains DiGeorge syndrome critical region 6 (DGCR6) proteins (approximately 200 residues long) of a number of vertebrates. DGCR6 is a candidate for involvement in the DiGeorge syndrome pathology by playing a role in neural crest cell migration into the third and fourth pharyngeal pouches, the structures from which derive the organs affected in DiGeorge syndrome []. Also found in this family is the Drosophila melanogaster gonadal protein gdl.
Probab=31.77 E-value=1.2e+02 Score=26.73 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=15.4
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 024913 18 QIDSELVLSIEKLQEIQDEL 37 (260)
Q Consensus 18 ~~~~~v~~~i~~L~~lQ~e~ 37 (260)
.+++.|...+..|.++|.-.
T Consensus 56 LldgtIFeiV~~L~eiQ~~~ 75 (196)
T PF07324_consen 56 LLDGTIFEIVKGLLEIQHLT 75 (196)
T ss_pred HccchHHHHHHHHHHHHHHH
Confidence 55677888899998888643
No 36
>PRK13611 photosystem II reaction center protein Psb28; Provisional
Probab=31.48 E-value=1.9e+02 Score=22.85 Aligned_cols=56 Identities=14% Similarity=0.211 Sum_probs=38.6
Q ss_pred cceeEEEEccCCCcceEEEEEec-CCCcccCCeEEEEEEeeCCCCCceeeeccccccCCCC
Q 024913 102 LSSLEVEDFKDVKSGYSITFNFS-PNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMG 161 (260)
Q Consensus 102 L~dI~Ve~~~d~~~~f~i~F~F~-~NpyF~N~~LtK~~~~~~~~g~~~~~~t~I~Wk~gk~ 161 (260)
|.+|++....+ ...=+.+|.|. |+. ++ ..++- .++.+++|..+...+..+...|+.
T Consensus 14 ~p~VrLtRsrd-g~~g~a~f~F~~~~~-~~-~~itg-m~liDeEGei~tr~v~~KFvnGkp 70 (104)
T PRK13611 14 PTQVRLLKSKT-GKRGSAIFRFEDLKS-DT-QNILG-MRMIDEEGELTTRNIKAKFLNGEF 70 (104)
T ss_pred CCceEEEEccC-CCccEEEEEEcCCcc-cc-cceee-EEEEccCCcEEEEecceEEECCCc
Confidence 78999998877 45667899995 566 33 55666 556555887666666666666664
No 37
>PRK14145 heat shock protein GrpE; Provisional
Probab=30.94 E-value=2.2e+02 Score=24.98 Aligned_cols=65 Identities=15% Similarity=0.206 Sum_probs=31.3
Q ss_pred CCCCccccchhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhh
Q 024913 1 MVADKGKKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDI 69 (260)
Q Consensus 1 ~~~~~~~~~~~~~e~~~~~~~~v~~~i~~L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~ply~kR~ei 69 (260)
|-+||.--+..+.......+.++...-..|..++.++..+..++ +.+...+...++-.-..|..+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~e~~~l~~~l~~le~e~~el~d~~----lR~~AEfeN~rkR~~kE~e~~ 89 (196)
T PRK14145 25 MEGPPEDEQAQQNQPQQQTVDEIEELKQKLQQKEVEAQEYLDIA----QRLKAEFENYRKRTEKEKSEM 89 (196)
T ss_pred cCCCcHHHHHhhcccccCchhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 34454444444444445555555555555666666666655544 334444443333333344333
No 38
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=30.63 E-value=39 Score=38.79 Aligned_cols=9 Identities=78% Similarity=1.276 Sum_probs=3.9
Q ss_pred CCCCCCCCC
Q 024913 251 DDEDGDDEG 259 (260)
Q Consensus 251 ~~~~~~~~~ 259 (260)
||||..|+|
T Consensus 184 ~de~~~~~~ 192 (2849)
T PTZ00415 184 DDEDEEDEG 192 (2849)
T ss_pred CchhccCCC
Confidence 344444443
No 39
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=29.95 E-value=36 Score=35.86 Aligned_cols=10 Identities=30% Similarity=0.444 Sum_probs=7.0
Q ss_pred ecCCCcccCC
Q 024913 123 FSPNPYFEDN 132 (260)
Q Consensus 123 F~~NpyF~N~ 132 (260)
++.||-|-|.
T Consensus 692 r~R~P~f~nA 701 (988)
T KOG2038|consen 692 RKRNPLFCNA 701 (988)
T ss_pred ccCCccccCC
Confidence 3568888775
No 40
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=29.63 E-value=1.2e+02 Score=32.01 Aligned_cols=46 Identities=24% Similarity=0.408 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhc
Q 024913 27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (260)
Q Consensus 27 i~~L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~ply~kR~eiI~~ 72 (260)
...+...|+..+..+-...+.+++...--+++++-+|.+|+.++.+
T Consensus 550 ~~~~~~aQ~~~e~~~~~~Rk~~~~~d~v~~~QR~~iY~~R~~il~~ 595 (745)
T TIGR00963 550 TRALESAQKRVEARNFDIRKQLLEYDDVLNKQREVIYAERRRILES 595 (745)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHcc
Confidence 4566778999999999999999999999999999999999999964
No 41
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=29.27 E-value=20 Score=23.11 Aligned_cols=14 Identities=36% Similarity=0.629 Sum_probs=11.9
Q ss_pred eeccccccCCCCCC
Q 024913 150 TATSIKWKEGMGIP 163 (260)
Q Consensus 150 ~~t~I~Wk~gk~~t 163 (260)
..||.+|++|.++.
T Consensus 10 v~tPanW~pGd~~i 23 (40)
T PF10417_consen 10 VATPANWKPGDDVI 23 (40)
T ss_dssp SBBCTTTCTTSGEB
T ss_pred cccCcCCCCCCCeE
Confidence 57999999998865
No 42
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=27.24 E-value=2.5e+02 Score=20.49 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=23.9
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 024913 15 NAEQIDSELVLSIEKLQEIQDELEKINEE 43 (260)
Q Consensus 15 ~~~~~~~~v~~~i~~L~~lQ~e~~~le~~ 43 (260)
....|...++++|+.+..||.++..+..+
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~ 33 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEK 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778999999999999999988775
No 43
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=26.90 E-value=48 Score=34.32 Aligned_cols=28 Identities=54% Similarity=0.814 Sum_probs=14.6
Q ss_pred CcccccCCcCCCCCCCCCCCCCCCCCCC
Q 024913 223 DEEEFEGDEEGKEDDDSEDDEDDQEEDD 250 (260)
Q Consensus 223 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 250 (260)
.++|-++.+-|++=.+||||+||..++|
T Consensus 523 SDeEWEEEepGESlS~sEddedd~~eEd 550 (811)
T KOG4364|consen 523 SDEEWEEEEPGESLSDSEDDEDDSLEED 550 (811)
T ss_pred CcccccccCCCccccccccccccccccc
Confidence 3444444444555566666666554444
No 44
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=26.39 E-value=1.6e+02 Score=31.15 Aligned_cols=47 Identities=28% Similarity=0.354 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhcc
Q 024913 27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSI 73 (260)
Q Consensus 27 i~~L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~ply~kR~eiI~~I 73 (260)
-..+...|+..+..+-...+.+++...-.+.+++-+|.+|+.|+.+-
T Consensus 574 ~~~i~~aQ~~~e~~~~~~Rk~~~~~d~v~~~QR~~iy~~R~~il~~~ 620 (762)
T TIGR03714 574 RKIVEKAQRASEDKGESAREQTNEFEESLSIQRENIYAERNRLIEGS 620 (762)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45667789999999999999999999999999999999999999653
No 45
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.27 E-value=31 Score=37.08 Aligned_cols=9 Identities=56% Similarity=1.302 Sum_probs=5.4
Q ss_pred ccccc-cccc
Q 024913 180 ESFFT-WFSD 188 (260)
Q Consensus 180 ~SFF~-~F~~ 188 (260)
.+||. ||..
T Consensus 817 ~~ff~~wf~~ 826 (1010)
T KOG1991|consen 817 NNFFTLWFQF 826 (1010)
T ss_pred ccHHHHHHHH
Confidence 46665 6664
No 46
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=25.85 E-value=3.5e+02 Score=21.67 Aligned_cols=65 Identities=20% Similarity=0.282 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhcchhh--HHHHHhh
Q 024913 18 QIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDF--WLTAFIS 83 (260)
Q Consensus 18 ~~~~~v~~~i~~L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~ply~kR~eiI~~IP~F--W~~vl~n 83 (260)
.+...+...+..+-..|+.|+....++.+.+..+.++-.+..+ +...=+.-++.|-+| |..+|-+
T Consensus 33 ~l~d~ln~~v~~~~~Nqk~ie~e~k~L~~~~~~l~kqt~qw~~-~~~~~~~~LKEiGDveNWa~~iE~ 99 (121)
T PF06320_consen 33 ALVDHLNSRVSEAYENQKKIEKEAKQLQRNTAKLAKQTDQWLK-LVDSFNDALKEIGDVENWAEMIER 99 (121)
T ss_pred HHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhccHHHHHHHHHH
Confidence 4445677777788888888888777777777777666555554 555556667777777 8877743
No 47
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=25.60 E-value=1.7e+02 Score=22.01 Aligned_cols=26 Identities=12% Similarity=0.279 Sum_probs=21.3
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHH
Q 024913 17 EQIDSELVLSIEKLQEIQDELEKINE 42 (260)
Q Consensus 17 ~~~~~~v~~~i~~L~~lQ~e~~~le~ 42 (260)
..+|+.++.-|..++.+..++..++.
T Consensus 50 ~~lp~~~keLL~EIA~lE~eV~~LE~ 75 (88)
T PF14389_consen 50 SSLPKKAKELLEEIALLEAEVAKLEQ 75 (88)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999888887766654
No 48
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=24.76 E-value=30 Score=31.80 Aligned_cols=52 Identities=15% Similarity=0.233 Sum_probs=23.5
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhHHhhhh
Q 024913 17 EQIDSELVLSIEKLQEIQDELEKINEEA----SEKVLEVEQKYSEIRKPVYDKRND 68 (260)
Q Consensus 17 ~~~~~~v~~~i~~L~~lQ~e~~~le~~~----~~e~~~le~ky~k~~~ply~kR~e 68 (260)
.++|..+-.+|.--.+-.+-|..++.++ ..-++++.+++.++.|-+..-|+=
T Consensus 70 aH~P~klwErikLSkNyekALeQIde~Ll~Wp~~~~HKcKQRltklTQylir~rkl 125 (303)
T KOG3064|consen 70 AHMPRKLWERIKLSKNYEKALEQIDEQLLYWPKYVIHKCKQRLTKLTQYLIRMRKL 125 (303)
T ss_pred hcCcHHHHHHHhcchhHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566665555543333333333332221 122355566666666655544433
No 49
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=24.75 E-value=1.8e+02 Score=31.12 Aligned_cols=46 Identities=24% Similarity=0.465 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhc
Q 024913 27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (260)
Q Consensus 27 i~~L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~ply~kR~eiI~~ 72 (260)
-..+...|+..+..+-...+.+++...--+.+++-+|.+|+.|+.+
T Consensus 606 ~~~i~~aQ~~~e~~~~~~Rk~~l~yd~v~~~QR~~iY~~R~~iL~~ 651 (830)
T PRK12904 606 TRAIENAQKKVEGRNFDIRKQLLEYDDVMNDQRKVIYAQRNEILEG 651 (830)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4456678999999999999999999999999999999999999975
No 50
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=24.27 E-value=1.9e+02 Score=31.28 Aligned_cols=46 Identities=22% Similarity=0.369 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhc
Q 024913 27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (260)
Q Consensus 27 i~~L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~ply~kR~eiI~~ 72 (260)
-.++...|+.+...+-...+.+++...-.+.+++-+|.+|+.|+.+
T Consensus 570 ~~~ie~AQkkvE~~nfdiRK~ll~yDdV~n~QR~~IY~~R~~iL~~ 615 (925)
T PRK12903 570 SKALLNAQKKIEGFNFDTRKNVLDYDDVIRQQRDLIYAQRDLILIA 615 (925)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4566778999999999999999999999999999999999999965
No 51
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=24.25 E-value=1.8e+02 Score=30.80 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhc
Q 024913 27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (260)
Q Consensus 27 i~~L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~ply~kR~eiI~~ 72 (260)
-..+...|+..+..+-...+.+++...-.+.+++-+|.+|+.|+.+
T Consensus 576 ~~~i~~aQk~vE~~~~~~Rk~~~~yd~v~~~QR~~iy~~R~~il~~ 621 (764)
T PRK12326 576 ADLVDHAQRVAEGQLLEIHANTWRYNQLIAQQRAIIVERRERLLRT 621 (764)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3456668999999999999999999999999999999999999964
No 52
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=24.20 E-value=1.9e+02 Score=30.79 Aligned_cols=48 Identities=23% Similarity=0.225 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhcc
Q 024913 26 SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSI 73 (260)
Q Consensus 26 ~i~~L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~ply~kR~eiI~~I 73 (260)
....|...|+..+..+-...+.+++...--+.+++-+|.+|+.++.+-
T Consensus 576 ~~~~~~~aQ~~~e~~~~~~R~~~~~~d~~~~~QR~~iy~~R~~~l~~~ 623 (790)
T PRK09200 576 VHKIVVKAQRISEGAGYSAREYALELDDVINIQRDVVYKERNRLLEED 623 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 345667789999999999999999999999999999999999999764
No 53
>PF14992 TMCO5: TMCO5 family
Probab=24.14 E-value=2.4e+02 Score=26.19 Aligned_cols=55 Identities=18% Similarity=0.442 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhh---hhhh--------------hcchhhHHHHHhh
Q 024913 26 SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKR---NDII--------------KSIPDFWLTAFIS 83 (260)
Q Consensus 26 ~i~~L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~ply~kR---~eiI--------------~~IP~FW~~vl~n 83 (260)
.+..+..+|..+..++. ++++.-|+++-.+... ...++ ..+. ++-|-||.++|+-
T Consensus 149 q~~~i~klkE~L~rmE~--ekE~~lLe~el~k~q~-~~s~~~~~~~~~~e~~~~~~e~~~~~~~~~~~wkr~lr~ 220 (280)
T PF14992_consen 149 QANEIKKLKEKLRRMEE--EKEMLLLEKELSKYQM-QDSQSEKPGSELVETIQPNMEKTSLKKNSPTFWKRALRL 220 (280)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhc-hhhchhccCchhhhhhhccCCcccHHhhhhHHHHHHHHH
Confidence 34455566666666665 6666666666443222 12222 1111 2358899999875
No 54
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=24.02 E-value=1.8e+02 Score=31.44 Aligned_cols=46 Identities=17% Similarity=0.403 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhc
Q 024913 27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (260)
Q Consensus 27 i~~L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~ply~kR~eiI~~ 72 (260)
-..|...|+.++..+-...+.+++...-.+.+++-+|..|+.|+.+
T Consensus 721 ~k~ie~AQkkvE~~nf~iRK~ll~YD~Vln~QR~~IY~~R~~iL~~ 766 (939)
T PRK12902 721 TRSLEGAQKKVETYYYDIRKQVFEYDEVMNNQRRAIYAERRRVLEG 766 (939)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4566778999999999999999999999999999999999999965
No 55
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.65 E-value=2.4e+02 Score=26.01 Aligned_cols=34 Identities=15% Similarity=0.405 Sum_probs=21.6
Q ss_pred hhhhHHhhhhhh--hcchhhHHHHHhhhhhhhcccC
Q 024913 59 RKPVYDKRNDII--KSIPDFWLTAFISHPALGELLS 92 (260)
Q Consensus 59 ~~ply~kR~eiI--~~IP~FW~~vl~n~~~l~~~i~ 92 (260)
++-+|.+|..-+ .|=-.++..|+.+.--|+.+|+
T Consensus 99 r~~~l~~raRAmq~nG~~t~Yidvil~SkSfsD~Is 134 (265)
T COG3883 99 RQELLKKRARAMQVNGTATSYIDVILNSKSFSDLIS 134 (265)
T ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHccCcHHHHHH
Confidence 344555553332 3556677888888887877765
No 56
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=23.26 E-value=2e+02 Score=30.65 Aligned_cols=46 Identities=20% Similarity=0.395 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhc
Q 024913 27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (260)
Q Consensus 27 i~~L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~ply~kR~eiI~~ 72 (260)
...+...|+..+..+-...+.+++...--+.+++-+|.+|+.|+.+
T Consensus 587 ~~~i~~aQ~~~e~~~~~~Rk~l~~~d~v~~~QR~~iY~~R~~il~~ 632 (796)
T PRK12906 587 TRQVESAQKRVEGNNYDTRKQLLQYDDVMREQREVIYKQRMQVINE 632 (796)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4456668999999999999999999999999999999999999976
No 57
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=23.18 E-value=69 Score=32.01 Aligned_cols=13 Identities=31% Similarity=0.363 Sum_probs=9.6
Q ss_pred ccccchhhhcccC
Q 024913 209 DLWPNPLTYFNNE 221 (260)
Q Consensus 209 ~i~p~al~yy~~~ 221 (260)
-|.|.++.-|.|.
T Consensus 172 mLlPCg~D~F~Gv 184 (615)
T KOG3540|consen 172 MLLPCGLDMFRGV 184 (615)
T ss_pred ceeccccccccCc
Confidence 4678888888775
No 58
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=22.96 E-value=2e+02 Score=31.06 Aligned_cols=46 Identities=24% Similarity=0.419 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhc
Q 024913 27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (260)
Q Consensus 27 i~~L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~ply~kR~eiI~~ 72 (260)
...+...|+..+..+-...+.+++...--+++++-+|.+|+.+|.+
T Consensus 624 ~~~i~~aQk~vE~~~~~~Rk~ll~yD~Vln~QR~~IY~~R~~iL~~ 669 (913)
T PRK13103 624 TNAIEKAQRKVEGRNFDIRKQLLEFDDVANEQRKVIYHMRNSLLAA 669 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3456678999999999999999999999999999999999999965
No 59
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=22.23 E-value=2.8e+02 Score=19.37 Aligned_cols=39 Identities=10% Similarity=0.160 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhh
Q 024913 33 IQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIK 71 (260)
Q Consensus 33 lQ~e~~~le~~~~~e~~~le~ky~k~~~ply~kR~eiI~ 71 (260)
|..++..+-..+..........-.+.+.-.++++.+||.
T Consensus 3 Lw~~F~~a~~~~~~~~~~~~~~~~~~~~~n~~~K~~Li~ 41 (77)
T PF03993_consen 3 LWKRFRAACDAFFDRRKEFFEEQDAEREENLEKKEALIE 41 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444445555555556666666664
No 60
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=22.14 E-value=3.9e+02 Score=27.26 Aligned_cols=29 Identities=14% Similarity=0.172 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHhhhhhHHhhhhhhhc
Q 024913 44 ASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (260)
Q Consensus 44 ~~~e~~~le~ky~k~~~ply~kR~eiI~~ 72 (260)
...++..+..+|.+..+-+-..|...-++
T Consensus 347 Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~ 375 (557)
T COG0497 347 LEKEVKKLKAELLEAAEALSAIRKKAAKE 375 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777777777665443
No 61
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=21.73 E-value=2.2e+02 Score=30.66 Aligned_cols=47 Identities=23% Similarity=0.425 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhcc
Q 024913 27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSI 73 (260)
Q Consensus 27 i~~L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~ply~kR~eiI~~I 73 (260)
...+...|+..+..+-...+.+++...-.+.+++-+|.+|+.++.+-
T Consensus 663 ~~~i~~aQ~~vE~~~~~~Rk~ll~yD~v~~~QR~~iY~~R~~iL~~~ 709 (870)
T CHL00122 663 SKSLDSAQKKVEEYYYDQRKQLFEYDQVLNKQRKAIYSERRKILESQ 709 (870)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44667789999999999999999999999999999999999999763
No 62
>KOG3241 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.38 E-value=78 Score=27.59 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhhhhhHH
Q 024913 46 EKVLEVEQKYSEIRKPVYD 64 (260)
Q Consensus 46 ~e~~~le~ky~k~~~ply~ 64 (260)
+++.+-.+||- .|+||-+
T Consensus 49 kEqieWk~KY~-KYKpLt~ 66 (227)
T KOG3241|consen 49 KEQIEWKRKYG-KYKPLTE 66 (227)
T ss_pred HHHHHHHHHhc-cccccch
Confidence 34455566664 5667654
No 63
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=21.28 E-value=2.3e+02 Score=30.58 Aligned_cols=46 Identities=17% Similarity=0.360 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhc
Q 024913 27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (260)
Q Consensus 27 i~~L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~ply~kR~eiI~~ 72 (260)
-..+...|+..+..+-...+.+++...-.+++++-+|.+|+.++.+
T Consensus 620 ~~~i~~aQ~~vE~~~~~~Rk~ll~yd~V~n~QR~~iY~~R~~iL~~ 665 (896)
T PRK13104 620 TRAIENAQRKLEGHHFDVRKQLLDYDNVANDQRQVIYTQRASIMAM 665 (896)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3456668999999999999999999999999999999999999965
No 64
>PF03344 Daxx: Daxx Family; InterPro: IPR005012 Daxx is a ubiquitously expressed protein that functions, in part, as a transcriptional co-repressor through its interaction with a growing number of nuclear, DNA-associated proteins. Human Daxx contains four structural domains commonly found in transcriptional regulatory proteins: two predicted paired amphipathic helices, an acid-rich domain and a Ser/Pro/Thr (SPT)-rich domain. The post-translational modification status of the SPT-domain of hDaxx regulates its association with transcription factors such as Pax3 and ETS-1, effectively bringing hDaxx to sites of active transcription. Through its presence at the site of active transcription, hDaxx could then be able to associate with acetylated histones present in the nucleosomes and Dek that is associated with chromatin. Through its association with the SPT-domain of hDaxx, histone deacetylases may also be brought to the site of active transcription. As a consequence, nucleosomes in the vicinity of the site of active transcription will have the histone tails deacetylated, allowing the deactylated tail to bind to DNA, thereby leading to an inactive chromatin structure and transcriptional repression []. The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis as a component of nuclear promyelocytic leukemia protein (PML) oncogenic domains (PODS). Daxx associates with PODs through a direct interaction with PML, a critical component of PODs. The interaction is a dynamic, cell cycle regulated event and is dependent on the post-translational modification of PML by the small ubiquitin-related modifier SUMO-1. ; PDB: 2KZS_A 2KZU_A.
Probab=20.57 E-value=33 Score=35.77 Aligned_cols=6 Identities=0% Similarity=0.451 Sum_probs=0.0
Q ss_pred hhcCcc
Q 024913 98 IFRYLS 103 (260)
Q Consensus 98 iL~~L~ 103 (260)
||++|.
T Consensus 301 vl~~v~ 306 (713)
T PF03344_consen 301 VLQCVE 306 (713)
T ss_dssp ------
T ss_pred cccccc
Confidence 444444
No 65
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=20.44 E-value=2.4e+02 Score=30.66 Aligned_cols=46 Identities=22% Similarity=0.358 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhc
Q 024913 27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (260)
Q Consensus 27 i~~L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~ply~kR~eiI~~ 72 (260)
...+...|+..+..+-...+.+++...--+.+++-+|.+|+.++.+
T Consensus 714 ~~~i~~aQk~vE~~~~~~Rk~ll~yD~Vln~QR~vIY~~R~~iL~~ 759 (970)
T PRK12899 714 NRLIETAQKRVEGRNYTIRKHTLEYDDVMNKQRQTIYAFRNDVLHA 759 (970)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3456668999999999999999999999999999999999999965
No 66
>PRK01546 hypothetical protein; Provisional
Probab=20.17 E-value=2.1e+02 Score=21.47 Aligned_cols=41 Identities=22% Similarity=0.283 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024913 19 IDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRK 60 (260)
Q Consensus 19 ~~~~v~~~i~~L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~ 60 (260)
++..+..+|..|...++. ..|..+-..|..+|++.|.+.++
T Consensus 2 ~~~~~i~RINeLakK~K~-~gLT~eEk~Eq~~LR~eYl~~fR 42 (79)
T PRK01546 2 LSHELVERINFLAKKAKA-EGLTEEEQRERQSLREQYLKGFR 42 (79)
T ss_pred CcHHHHHHHHHHHHhhcc-cCCCHHHHHHHHHHHHHHHHHHH
Confidence 456788999999988886 34444444556677777765444
Done!