Query 024913
Match_columns 260
No_of_seqs 124 out of 598
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 16:38:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024913.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024913hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e50_A Protein SET; histone ch 100.0 9.9E-62 3.4E-66 428.1 16.7 214 1-220 1-222 (225)
2 2ayu_A Nucleosome assembly pro 100.0 1.7E-61 5.7E-66 458.3 18.0 218 12-229 81-371 (417)
3 3fs3_A Nucleosome assembly pro 100.0 7.6E-58 2.6E-62 424.0 20.1 219 12-230 40-301 (359)
4 2zd7_A VPS75, vacuolar protein 100.0 2E-56 6.7E-61 402.8 15.4 197 30-226 11-224 (264)
5 3kyp_A Pfnaps, nucleosome asse 100.0 5E-57 1.7E-61 389.9 10.6 189 27-222 2-192 (193)
6 2p2u_A HOST-nuclease inhibitor 93.5 0.2 6.7E-06 41.6 7.1 69 7-76 3-71 (171)
7 2jo8_A Serine/threonine-protei 92.9 0.24 8.4E-06 33.1 5.4 37 30-66 12-48 (51)
8 2ca6_A RAN GTPase-activating p 77.0 0.6 2.1E-05 41.8 0.6 6 80-85 182-187 (386)
9 2zd7_A VPS75, vacuolar protein 68.0 11 0.00039 33.0 6.7 45 21-65 9-53 (264)
10 2ayu_A Nucleosome assembly pro 60.4 1.9 6.5E-05 40.6 0.1 7 184-190 311-317 (417)
11 3vem_A Helicase protein MOM1; 39.7 1.1E+02 0.0037 23.6 7.0 44 38-84 60-106 (115)
12 4fp9_B Mterf domain-containing 33.2 9 0.00031 34.8 0.0 6 80-85 98-103 (335)
13 3jux_A Protein translocase sub 31.2 81 0.0028 32.1 6.5 44 29-72 622-665 (822)
14 2jee_A YIIU; FTSZ, septum, coi 30.9 1.4E+02 0.0046 21.6 6.0 33 13-45 5-37 (81)
15 2fsf_A Preprotein translocase 27.3 1E+02 0.0034 31.6 6.5 45 28-72 617-661 (853)
16 1nkt_A Preprotein translocase 26.6 1.1E+02 0.0036 31.7 6.5 45 28-72 651-695 (922)
17 2ipc_A Preprotein translocase 24.9 1.2E+02 0.0041 31.5 6.5 45 28-72 732-776 (997)
18 2kmw_A Uncharacterized protein 24.4 67 0.0023 25.4 3.8 6 118-123 37-42 (150)
19 3vem_A Helicase protein MOM1; 24.3 2.4E+02 0.0082 21.6 7.1 30 33-62 66-95 (115)
20 3bhp_A UPF0291 protein YNZC; N 24.1 1.3E+02 0.0044 20.5 4.5 44 19-63 2-45 (60)
21 1tf5_A Preprotein translocase 24.0 1.3E+02 0.0044 30.8 6.5 44 29-72 580-623 (844)
22 2yvc_D Neprilysin; protein-pep 23.3 24 0.00081 19.7 0.6 9 1-9 12-20 (26)
23 2fzt_A Hypothetical protein TM 22.1 77 0.0026 22.6 3.2 27 51-77 15-41 (79)
24 2zqm_A Prefoldin beta subunit 21.6 2.2E+02 0.0076 20.6 6.1 28 18-45 3-30 (117)
25 2fic_A Bridging integrator 1; 20.1 3.2E+02 0.011 22.5 7.5 12 69-80 202-213 (251)
No 1
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
Probab=100.00 E-value=9.9e-62 Score=428.08 Aligned_cols=214 Identities=43% Similarity=0.831 Sum_probs=174.6
Q ss_pred CCCCccccchhhhh-----hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhcchh
Q 024913 1 MVADKGKKTKVEEE-----NAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPD 75 (260)
Q Consensus 1 ~~~~~~~~~~~~~e-----~~~~~~~~v~~~i~~L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~ply~kR~eiI~~IP~ 75 (260)
|++|++||+|+..+ ....++++++++|.+|+.||.+++.+++++++++++|+++|+++++|+|++|++||++||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~iQ~e~~~l~~e~~~ev~~lE~ky~~~~~Ply~kR~eII~~IP~ 80 (225)
T 2e50_A 1 MSAQAAKVSKKELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPN 80 (225)
T ss_dssp CHHHHHHHHHHHTTC-----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred CCCCcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHhcccc
Confidence 88999999999764 3457889999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhhhhhcccChhhHHhhcCcceeEEEEccCCCcceEEEEEecCCCcccCCeEEEEEEeeCCCCCceeeecccc
Q 024913 76 FWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIK 155 (260)
Q Consensus 76 FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~i~F~F~~NpyF~N~~LtK~~~~~~~~g~~~~~~t~I~ 155 (260)
||++||+||+.|+.+|++.|++||+||++|+|++..++..||+|+|+|++||||+|++|||+|++.. +|.+++++|+|+
T Consensus 81 FW~tal~n~~~l~~~i~e~De~iL~~L~dI~v~~~~d~~~gf~i~F~F~~N~yF~N~vLtK~y~~~~-~g~~~s~~t~I~ 159 (225)
T 2e50_A 81 FWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHMNE-SGDPSSKSTEIK 159 (225)
T ss_dssp HHHHHHHTSHHHHTTCCHHHHHHGGGEEEEEEEECCSSCCCEEEEEEECSCSSBSCSEEEEEEC--------CEEECCCC
T ss_pred HHHHHHhcChhhhhhccHhHHHHHHhcCeeEEEEccCCCCceEEEEEeCCCCCccCCEEEEEEEecC-CCCcccCCCcce
Confidence 9999999999999999999999999999999999988789999999999999999999999999998 888899999999
Q ss_pred ccCCCCCCCcccccc--CCCCcc-ccccccccccccccCCCccccchHHHHHHHhhccccchhhhccc
Q 024913 156 WKEGMGIPNGVNHEK--KGNKRP-LAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNN 220 (260)
Q Consensus 156 Wk~gk~~t~~~~~~k--~~~~r~-~~~~SFF~~F~~~~~~~~~e~~~~ei~~~i~d~i~p~al~yy~~ 220 (260)
||+|+++|++..+++ +|++|. .+..|||+||+++..+ ..++||++|+++|||+||+||+.
T Consensus 160 Wk~gkd~t~~~~~kk~~~~~~r~~~~~~SFF~fF~~~~~~-----~~~eige~ikd~i~P~av~yy~~ 222 (225)
T 2e50_A 160 WKSGKDMTKRSSQTQNKASRKRQHEEPESFFTWFTDHSDA-----GADELGEVIKDDIWPNPLQYYLV 222 (225)
T ss_dssp BCSSCCC----------------------CGGGGC-----------CHHHHHHHHHTTTTCSHHHHCC
T ss_pred ecCCCCccchhhhhcccccCcccCCCCCCcceecCCCCCC-----chhHHHHHHHhCccccHHHHhcC
Confidence 999999998865542 344454 3468999999998755 35899999999999999999984
No 2
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=100.00 E-value=1.7e-61 Score=458.26 Aligned_cols=218 Identities=27% Similarity=0.562 Sum_probs=190.7
Q ss_pred hhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhh---------------------
Q 024913 12 EEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDII--------------------- 70 (260)
Q Consensus 12 ~~e~~~~~~~~v~~~i~~L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~ply~kR~eiI--------------------- 70 (260)
+..|+.+||+.|+++|.+|+.||.++..|++++.+++++|++||.++++|||++|++||
T Consensus 81 ~~~~i~sLp~~v~~rI~aLk~lQ~e~~~le~ef~~ev~eLE~Ky~~~~~PLy~KR~eII~G~~ept~eE~~~~~~~~~~~ 160 (417)
T 2ayu_A 81 DSGYVGGLPKNVKEKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRIISGQEQPKPEQIAKGQEIVESL 160 (417)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHT
T ss_pred ccchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchhhhcccccccchh
Confidence 34789999999999999999999999999999999999999999999999999999998
Q ss_pred ----------------------hcchhhHHHHHhhhhhhhcccChhhHHhhcCcceeEEEEccCCCcceEEEEEe--cCC
Q 024913 71 ----------------------KSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNF--SPN 126 (260)
Q Consensus 71 ----------------------~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~i~F~F--~~N 126 (260)
+|||+||++||+||+.|+.+|+++|++||+||++|+|++..++..||+|+|+| .+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~kgIP~FWltalkN~~~lse~I~e~De~iLk~L~DI~Ve~~~d~~~gF~L~F~F~~~~N 240 (417)
T 2ayu_A 161 NETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSSAN 240 (417)
T ss_dssp TCGGGCCSSCC---------CCSSCTTHHHHHHHTSTTGGGTCCHHHHTGGGGEEEEECCBCCSSSCEEEEEEEECTTTC
T ss_pred hhhhhhhhhhhhcccccccccccCCccHHHHHHHcChHHHHhhhhhhHHHHhhccceEEEEccCCCcceEEEEEeCCCCC
Confidence 58999999999999999999999999999999999999988767899999999 999
Q ss_pred CcccCCeEEEEEEeeCC---CCCc---eeeeccccccC-CCCCCCccccccCC-----CCcc----cccccccccccccc
Q 024913 127 PYFEDNKLTKTFTFLDD---DGSM---KITATSIKWKE-GMGIPNGVNHEKKG-----NKRP----LAEESFFTWFSDTQ 190 (260)
Q Consensus 127 pyF~N~~LtK~~~~~~~---~g~~---~~~~t~I~Wk~-gk~~t~~~~~~k~~-----~~r~----~~~~SFF~~F~~~~ 190 (260)
|||+|++|||+|+|... +|+. .+++|+|+||+ |++||++..++|++ +.|+ ++..|||+||+++.
T Consensus 241 pYF~N~vLtKtY~~~~e~~~~g~~~~~~~egt~I~WK~~GknlT~k~~kkKqr~K~~~~~R~v~k~v~~~SFFnfFspp~ 320 (417)
T 2ayu_A 241 PFFTNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRTIEKITPIESFFNFFDPPK 320 (417)
T ss_dssp SSBCCSEEEEEEEEESSCCSSSSCEEEEEEECCCCBSCTTTCTTEEEEECCC---------CCEEEEECCCGGGGGSCSC
T ss_pred ccccCCeEEEEEEEeccCCCCCCcccccccCcceeeecCCCCcchhhhhhcccccCCCcccccccCCCCCCceeecCCCC
Confidence 99999999999999863 2443 47999999999 99999877655432 2332 45789999999987
Q ss_pred CCCcc--c----------cchHHHHHHHhhccccchhhhcccCCCcccccC
Q 024913 191 EKDTI--D----------GIQDEVAEIIKEDLWPNPLTYFNNEADEEEFEG 229 (260)
Q Consensus 191 ~~~~~--e----------~~~~ei~~~i~d~i~p~al~yy~~~~~~~e~~~ 229 (260)
.+... + ..+++||++|+++|||+||.||+|++.+++++.
T Consensus 321 ~p~~dede~~~ee~e~~l~~DfeIG~~Ikd~IiP~AV~yftGea~~~e~ed 371 (417)
T 2ayu_A 321 IQNEDQDEELEEDLEERLALDYSIGEQLKDKLIPRAVDWFTGAALEFEFEE 371 (417)
T ss_dssp SCCCTTSSSTTHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHSHHHHHHHC-
T ss_pred CCCccccccchHHHHHHHHHHHHHHHHHHhhccccHHHHhccccccccccc
Confidence 76532 1 146799999999999999999999987766653
No 3
>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Probab=100.00 E-value=7.6e-58 Score=424.03 Aligned_cols=219 Identities=26% Similarity=0.477 Sum_probs=171.5
Q ss_pred hhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhh----------cchhhHHHHH
Q 024913 12 EEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIK----------SIPDFWLTAF 81 (260)
Q Consensus 12 ~~e~~~~~~~~v~~~i~~L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~ply~kR~eiI~----------~IP~FW~~vl 81 (260)
..+++..||+.|+++|.+|+.||.+++.+++++++++++|++||+++++|+|++|++||+ +||+||++||
T Consensus 40 ~~~~m~sLp~~v~~rI~aLk~lQ~E~~~le~ef~eEv~~LE~KY~kl~qPLyeKR~eII~G~~e~e~~~kgIP~FWltvl 119 (359)
T 3fs3_A 40 YDDKMTDLTEEQKETLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRREALVGNGEAKIGTPNLPEFWLRAL 119 (359)
T ss_dssp -----CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCSSSTTSTTHHHHHH
T ss_pred hhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCccccccccCCCCcHHHHHH
Confidence 357889999999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred hhhhhhhcccChhhHHhhcCcceeEEEEcc---CCCcceEEEEEecCCCcccCCeEEEEEEeeCC--CCCc---eeeecc
Q 024913 82 ISHPALGELLSEEDQKIFRYLSSLEVEDFK---DVKSGYSITFNFSPNPYFEDNKLTKTFTFLDD--DGSM---KITATS 153 (260)
Q Consensus 82 ~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~---d~~~~f~i~F~F~~NpyF~N~~LtK~~~~~~~--~g~~---~~~~t~ 153 (260)
+||++|+.+|++.|+++|+||++|+|++.. +.++||+|+|+|++||||+|++|||+|++... +|.+ .+++|+
T Consensus 120 ~Nhp~ls~~I~e~De~iL~yL~DI~Ve~l~~~~~~~~gfkI~F~F~eNpYF~N~vLtKey~l~~~~~~~dp~~~~se~t~ 199 (359)
T 3fs3_A 120 RNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFYFATNPFFSNSVLTKTYHMKCVDCDNEPVLLHTEATV 199 (359)
T ss_dssp HTSHHHHTTCCHHHHHHHTTEEEEEEEECC-------CEEEEEEECSCSSBCCSEEEEEEEEC--------CEEEEEECC
T ss_pred HhchHHHHhccHhHHHHHhhcceeEEEEeccCCCCCCceEEEEEeCCCCcccCCEEEEEEEEeccCCCCCcccccceeee
Confidence 999999999999999999999999999863 45799999999999999999999999999852 2223 479999
Q ss_pred ccccCCCCCCCccccccCCCC-----c----cccccccccccccccCCCccc----------------cchHHHHHHHhh
Q 024913 154 IKWKEGMGIPNGVNHEKKGNK-----R----PLAEESFFTWFSDTQEKDTID----------------GIQDEVAEIIKE 208 (260)
Q Consensus 154 I~Wk~gk~~t~~~~~~k~~~~-----r----~~~~~SFF~~F~~~~~~~~~e----------------~~~~ei~~~i~d 208 (260)
|+||+||++|++..++|++++ | ..+..|||+||+++..+...+ +.+++||++|++
T Consensus 200 I~WK~GKdlT~k~~~kKqr~K~t~~~R~v~k~~~~eSFFnfFspp~~p~~de~~~~de~~~~~~e~~l~~DfeIGe~Ikd 279 (359)
T 3fs3_A 200 IDWYDNKNILKKNVVKKQHNKNSREVKTVQQTVNRDSFFHFFTSHKVPNSNVIKQLSKHEVAQLEMIIEGDYEVALTIKE 279 (359)
T ss_dssp CCBCTTCCTTCC----------------------CCCGGGGSCCBCC------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred eeEeCCCccchhhhhhhccccCCCCceeeeccCCCCCceeeCCCCCCCCcccccccchhhhHHHHHHHHHhHHHHHHHHh
Confidence 999999999988655433322 2 246799999999998764321 247899999999
Q ss_pred ccccchhhhcccCCCcccccCC
Q 024913 209 DLWPNPLTYFNNEADEEEFEGD 230 (260)
Q Consensus 209 ~i~p~al~yy~~~~~~~e~~~~ 230 (260)
+|||+||.||+|++.+++.+.-
T Consensus 280 ~IiP~av~yftGea~e~e~~~~ 301 (359)
T 3fs3_A 280 RIIPYAVDYYLGIIIESESNSI 301 (359)
T ss_dssp THHHHHHHHHTTCC--------
T ss_pred ceecChHHhhCCcccccccCCc
Confidence 9999999999999976664443
No 4
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=100.00 E-value=2e-56 Score=402.76 Aligned_cols=197 Identities=24% Similarity=0.413 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhcchhhHHHHHhhhhhhhcccChhhHHhhcCcceeEEEE
Q 024913 30 LQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVED 109 (260)
Q Consensus 30 L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~ply~kR~eiI~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve~ 109 (260)
|..++.++..++.++.++.++++++|+++++|+|++|++||+|||+||++||+|||+|+.+|++.|++||+||++|+|++
T Consensus 11 l~~~~~~l~~lq~e~~~~~~ele~ky~~~~~Ply~kR~eII~~IP~FWltal~n~~~l~~~I~e~De~iL~~L~dI~v~~ 90 (264)
T 2zd7_A 11 HAKAFLGLAKCEEEVDAIEREVELYRLNKMKPVYEKRDAYIDEIAEFWKIVLSQHVSFANYIRASDFKYIDTIDKIKVEW 90 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHSTTGGGGSCGGGHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHcChHHHhhcCHhhHHHHHhcCceEEEE
Confidence 44455555555555566668899999999999999999999999999999999999999999999999999999999999
Q ss_pred c-----cCCCcceEEEEEecC-CCcccCCeEEEEEEeeCC-CC--C--ceeeeccccccCCCCC-CCccccccC---CCC
Q 024913 110 F-----KDVKSGYSITFNFSP-NPYFEDNKLTKTFTFLDD-DG--S--MKITATSIKWKEGMGI-PNGVNHEKK---GNK 174 (260)
Q Consensus 110 ~-----~d~~~~f~i~F~F~~-NpyF~N~~LtK~~~~~~~-~g--~--~~~~~t~I~Wk~gk~~-t~~~~~~k~---~~~ 174 (260)
+ .+.++||+|+|+|++ ||||+|++|||+|++... +| . .++++|+|+||+|+++ |.+..++|+ |.+
T Consensus 91 ~~~~~~~~~~~gf~i~F~F~~~NpyF~N~vLtK~y~~~~~~dg~~~~~~~s~~t~I~WK~g~~~~~~~~~~kk~~~~~~~ 170 (264)
T 2zd7_A 91 LALESEMYDTRDFSITFHFHGIEGDFKEQQVTKVFQIKKGKDDQEDGILTSEPVPIEWPQSYDSINPDLIKDKRSPEGKK 170 (264)
T ss_dssp GGGTCTTSCTTCEEEEEEECCBTTTBCCEEEEEEEEEECCSSSCCCCEEEECCCCCCCCGGGGGGCTTTCSCSSSHHHHH
T ss_pred ecccccCCCCCceEEEEEeCCCCCCccCCeEEEEEEecccCCCCCCCceeEeecccccCCCccccchhhhhhcccccccc
Confidence 6 566899999999999 999999999999999872 13 2 6789999999997664 433332221 111
Q ss_pred c-cccccccccccccccCCCccc-cchHHHHHHHhhccccchhhhcccCCCccc
Q 024913 175 R-PLAEESFFTWFSDTQEKDTID-GIQDEVAEIIKEDLWPNPLTYFNNEADEEE 226 (260)
Q Consensus 175 r-~~~~~SFF~~F~~~~~~~~~e-~~~~ei~~~i~d~i~p~al~yy~~~~~~~e 226 (260)
+ .....|||+||+++..+++.+ ..+++||++|+++||||||+||+|.+.+++
T Consensus 171 ~~r~~~~SFF~fF~~~~~~~~~~~~~d~eig~~Ikd~I~P~al~yf~g~~~d~~ 224 (264)
T 2zd7_A 171 KYRQGMKTIFGWFRWTGLKPGKEFPHGDSLASLFSEEIYPFCVKYYAEAQRDLE 224 (264)
T ss_dssp HHHHHHTSHHHHTTCCSSSTTSSSTTHHHHHHHHHHTHHHHHHHHHHHHHHTTC
T ss_pred ccCCCCCCcceecCCCCCCccccccCchhHHHHHHhhhccCHHHHhcccccccc
Confidence 1 124479999999987654322 358999999999999999999999876543
No 5
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum}
Probab=100.00 E-value=5e-57 Score=389.91 Aligned_cols=189 Identities=30% Similarity=0.658 Sum_probs=159.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhcchhhHHHHHhhhhhhhcccChhhHHhhcCcceeE
Q 024913 27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLE 106 (260)
Q Consensus 27 i~~L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~ply~kR~eiI~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~ 106 (260)
+.+|+.||.+++.+++++.+++++|++||+++++|+|++|++||++||+||++||+|||+++.++ +.|+++|+||++|+
T Consensus 2 ~~~L~~iQ~e~~~l~~~~~~e~~~le~ky~~~~~p~y~kR~~iI~~IP~FW~t~l~n~~~ls~i~-~~De~~L~~L~di~ 80 (193)
T 3kyp_A 2 MQDFEDIQKDIEQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEIIQKIPGFWANTLRKHPALSDIV-PEDIDILNHLVKLD 80 (193)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTTHHHHTTSSSSTTSS-CHHHHTTCCCCEEC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcCCccHHHHHHHcCchHHHHH-HhhHHHHcCcceEE
Confidence 47899999999999999999999999999999999999999999999999999999999999865 79999999999999
Q ss_pred EEEccCCCcceEEEEEecC--CCcccCCeEEEEEEeeCCCCCceeeeccccccCCCCCCCccccccCCCCcccccccccc
Q 024913 107 VEDFKDVKSGYSITFNFSP--NPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEESFFT 184 (260)
Q Consensus 107 Ve~~~d~~~~f~i~F~F~~--NpyF~N~~LtK~~~~~~~~g~~~~~~t~I~Wk~gk~~t~~~~~~k~~~~r~~~~~SFF~ 184 (260)
|++..+++.||+|+|+|++ ||||+|++|||+|++.. +|..++++|+|+||+|+++|++..++|+...+..+..|||+
T Consensus 81 v~~~~~~~~gf~i~F~F~~n~N~yF~N~vLtK~y~~~~-~g~~~~~~t~I~Wk~gk~~t~~~~~kr~~~~~~~~~~SFF~ 159 (193)
T 3kyp_A 81 LKDNMDNNGSYKITFIFGEKAKEFMEPLTLVKHVTFDN-NQEKVVECTRIKWKEGKNPIAAVTHNRSDLDNEIPKWSIFE 159 (193)
T ss_dssp CBCCSSSSCCCEEEEECSCCSSCSCSCEEEECCCCCC-----CCCCCCCCCCCSSCCCCC--------------CCCTTT
T ss_pred EEEccCCCCceEEEEEEcCCCCccccCceEEEEEEEcC-CCCeeeccceeeeecCCCcchhhhhccccccccCCcchHhh
Confidence 9987777899999999998 89999999999999998 78888999999999999999765444332233457799999
Q ss_pred ccccccCCCccccchHHHHHHHhhccccchhhhcccCC
Q 024913 185 WFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNNEA 222 (260)
Q Consensus 185 ~F~~~~~~~~~e~~~~ei~~~i~d~i~p~al~yy~~~~ 222 (260)
||+++..+ .+++||++|+++||||||+||+|+.
T Consensus 160 wF~~~~~~-----~~~eige~ikd~i~P~~l~yy~ge~ 192 (193)
T 3kyp_A 160 WFTTDELQ-----DKPDVGELIRREIWHNPLSYYLGLE 192 (193)
T ss_dssp TCCSSCCT-----TTTCTTHHHHTTTTTCHHHHHC---
T ss_pred hcCCCCcC-----CchHHHHHHHhCeeeCHHHHhCCCC
Confidence 99998765 4788999999999999999999964
No 6
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=93.48 E-value=0.2 Score=41.63 Aligned_cols=69 Identities=12% Similarity=0.217 Sum_probs=53.8
Q ss_pred ccchhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhcchhh
Q 024913 7 KKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDF 76 (260)
Q Consensus 7 ~~~~~~~e~~~~~~~~v~~~i~~L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~ply~kR~eiI~~IP~F 76 (260)
.|.|... +.-.--.++-.++..+..|+.++..++..+..++.++...|.+..+|+-.+...+-.+|-.|
T Consensus 3 ar~k~~~-~~i~~~~~~~~alr~ia~l~r~~~~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~y 71 (171)
T 2p2u_A 3 SRRKPNP-VIVADIRQAEGALAEIATIDRKVGEIEAQMNEAIDAAKARASQKSAPLLARRKELEDGVATF 71 (171)
T ss_dssp --------CCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCC-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555432 33333366889999999999999999999999999999999999999998888887777766
No 7
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=92.88 E-value=0.24 Score=33.09 Aligned_cols=37 Identities=24% Similarity=0.510 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhh
Q 024913 30 LQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKR 66 (260)
Q Consensus 30 L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~ply~kR 66 (260)
+..|+..+..+...+++++-++.+.|..+++|+.+.-
T Consensus 12 ~eEL~~rl~~Ld~~Me~Ei~elr~RY~~KRqPIldAi 48 (51)
T 2jo8_A 12 VEDLQKRLLALDPMMEQEIEEIRQKYQSKRQPILDAI 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHHhHhhHHHHH
Confidence 3456777788899999999999999999999998653
No 8
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=76.97 E-value=0.6 Score=41.83 Aligned_cols=6 Identities=50% Similarity=0.722 Sum_probs=2.3
Q ss_pred HHhhhh
Q 024913 80 AFISHP 85 (260)
Q Consensus 80 vl~n~~ 85 (260)
+|.+++
T Consensus 182 ~l~~~~ 187 (386)
T 2ca6_A 182 TFQSHR 187 (386)
T ss_dssp HHHHCT
T ss_pred HHHhCC
Confidence 333333
No 9
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=68.03 E-value=11 Score=32.99 Aligned_cols=45 Identities=20% Similarity=0.204 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHh
Q 024913 21 SELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDK 65 (260)
Q Consensus 21 ~~v~~~i~~L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~ply~k 65 (260)
.+++.++.+|..||.++..++.++.++..++.+-+..+++.+...
T Consensus 9 ~~l~~~~~~l~~lq~e~~~~~~ele~ky~~~~~Ply~kR~eII~~ 53 (264)
T 2zd7_A 9 NEHAKAFLGLAKCEEEVDAIEREVELYRLNKMKPVYEKRDAYIDE 53 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Confidence 458899999999999999999999999988888777777666543
No 10
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=60.38 E-value=1.9 Score=40.63 Aligned_cols=7 Identities=14% Similarity=0.344 Sum_probs=2.8
Q ss_pred ccccccc
Q 024913 184 TWFSDTQ 190 (260)
Q Consensus 184 ~~F~~~~ 190 (260)
+||.+-.
T Consensus 311 SFFnfFs 317 (417)
T 2ayu_A 311 SFFNFFD 317 (417)
T ss_dssp CGGGGGS
T ss_pred CceeecC
Confidence 3444433
No 11
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=39.74 E-value=1.1e+02 Score=23.55 Aligned_cols=44 Identities=16% Similarity=0.182 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh---HHhhhhhhhcchhhHHHHHhhh
Q 024913 38 EKINEEASEKVLEVEQKYSEIRKPV---YDKRNDIIKSIPDFWLTAFISH 84 (260)
Q Consensus 38 ~~le~~~~~e~~~le~ky~k~~~pl---y~kR~eiI~~IP~FW~~vl~n~ 84 (260)
..|..+|.+|+.++.+||..+++-+ |.+++ +.+...--.|+.|.
T Consensus 60 lqLkse~e~E~ae~k~KYD~~lqe~ese~~~kk---K~le~~~~kV~mNk 106 (115)
T 3vem_A 60 SILKAELERKMAEVQAEFRRKFHEVEAEHNTRT---TKIEKDKNLVIMNK 106 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3455668888888888888877654 22322 34555566777764
No 12
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=33.16 E-value=9 Score=34.78 Aligned_cols=6 Identities=17% Similarity=0.418 Sum_probs=2.5
Q ss_pred HHhhhh
Q 024913 80 AFISHP 85 (260)
Q Consensus 80 vl~n~~ 85 (260)
+|+.+|
T Consensus 98 iL~k~P 103 (335)
T 4fp9_B 98 VLKKSP 103 (335)
T ss_dssp HHHHCG
T ss_pred HHHhCh
Confidence 344444
No 13
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=31.18 E-value=81 Score=32.10 Aligned_cols=44 Identities=25% Similarity=0.470 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhc
Q 024913 29 KLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (260)
Q Consensus 29 ~L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~ply~kR~eiI~~ 72 (260)
++...|++....+-...+.+++...-.+.+++-+|.+|+.|+.+
T Consensus 622 ~ie~AQkkvE~~nf~~Rk~ll~yDdv~n~QR~~iY~~R~~iL~~ 665 (822)
T 3jux_A 622 LIENIQKKVEGINFSIRKTLMEMDDVLDKQRRAVYSLRDQILLE 665 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56778999999999999999999999999999999999999975
No 14
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=30.86 E-value=1.4e+02 Score=21.55 Aligned_cols=33 Identities=21% Similarity=0.390 Sum_probs=26.7
Q ss_pred hhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024913 13 EENAEQIDSELVLSIEKLQEIQDELEKINEEAS 45 (260)
Q Consensus 13 ~e~~~~~~~~v~~~i~~L~~lQ~e~~~le~~~~ 45 (260)
-|....|...|+++++.+.-||.++..+..+..
T Consensus 5 ~ElleqLE~KIq~avdtI~lLqmEieELKekN~ 37 (81)
T 2jee_A 5 LEVFEKLEAKVQQAIDTITLLQMEIEELKEKNN 37 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788899999999999999988877653
No 15
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=27.35 E-value=1e+02 Score=31.57 Aligned_cols=45 Identities=20% Similarity=0.454 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhc
Q 024913 28 EKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (260)
Q Consensus 28 ~~L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~ply~kR~eiI~~ 72 (260)
..+...|+.+...+-...+.+++...-.+.+++-+|.+|++++.+
T Consensus 617 ~~i~~aq~~ve~~~~~~Rk~ll~yddv~n~QR~~iy~~R~~~l~~ 661 (853)
T 2fsf_A 617 KAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYSQRNELLDV 661 (853)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 446667888888888888888888888889999999999999964
No 16
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=26.60 E-value=1.1e+02 Score=31.68 Aligned_cols=45 Identities=24% Similarity=0.447 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhc
Q 024913 28 EKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (260)
Q Consensus 28 ~~L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~ply~kR~eiI~~ 72 (260)
.++...|+++...+-...+.+++...-.+.+++-+|.+|+.|+.+
T Consensus 651 ~~ie~aQkkvE~~nf~iRk~ll~yDdv~n~QR~~iY~~R~~iL~~ 695 (922)
T 1nkt_A 651 RAIKSAQTQVEQQNFEVRKNVLKYDEVMNQQRKVIYAERRRILEG 695 (922)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 446678999999998888888888888889999999999999964
No 17
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=24.90 E-value=1.2e+02 Score=31.55 Aligned_cols=45 Identities=20% Similarity=0.341 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhc
Q 024913 28 EKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (260)
Q Consensus 28 ~~L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~ply~kR~eiI~~ 72 (260)
.++...|++....+-...+.+++...-.+.+++-+|.+|+.|+.+
T Consensus 732 ~~ie~AQkkvE~~nf~iRK~ll~yDdV~n~QR~~IY~~R~~iL~~ 776 (997)
T 2ipc_A 732 RSIERAQKRVEDRNFAIRKQLLQFDDVLSRQREVIYAQRRLILLG 776 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 446678999999999999999988888899999999999999976
No 18
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=24.40 E-value=67 Score=25.41 Aligned_cols=6 Identities=17% Similarity=0.334 Sum_probs=2.5
Q ss_pred EEEEEe
Q 024913 118 SITFNF 123 (260)
Q Consensus 118 ~i~F~F 123 (260)
+|+|.+
T Consensus 37 ~l~~~~ 42 (150)
T 2kmw_A 37 LFSFSA 42 (150)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 344444
No 19
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=24.27 E-value=2.4e+02 Score=21.56 Aligned_cols=30 Identities=17% Similarity=0.294 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024913 33 IQDELEKINEEASEKVLEVEQKYSEIRKPV 62 (260)
Q Consensus 33 lQ~e~~~le~~~~~e~~~le~ky~k~~~pl 62 (260)
|..++..+..++...+.+++..|..+.+-+
T Consensus 66 ~e~E~ae~k~KYD~~lqe~ese~~~kkK~l 95 (115)
T 3vem_A 66 LERKMAEVQAEFRRKFHEVEAEHNTRTTKI 95 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433
No 20
>3bhp_A UPF0291 protein YNZC; NESG, SR384, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.01A {Bacillus subtilis}
Probab=24.05 E-value=1.3e+02 Score=20.46 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 024913 19 IDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVY 63 (260)
Q Consensus 19 ~~~~v~~~i~~L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~ply 63 (260)
.+.+...+|..|...++. ..|..+-..|..+|++.|-+.++--+
T Consensus 2 m~~~~i~RINeLakK~K~-~gLT~eEk~EQ~~LR~eYl~~fR~~~ 45 (60)
T 3bhp_A 2 ISNAKIARINELAAKAKA-GVITEEEKAEQQKLRQEYLKGFRSSM 45 (60)
T ss_dssp CCHHHHHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677899999988877 44444445566778888876655433
No 21
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=23.96 E-value=1.3e+02 Score=30.76 Aligned_cols=44 Identities=20% Similarity=0.394 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhc
Q 024913 29 KLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (260)
Q Consensus 29 ~L~~lQ~e~~~le~~~~~e~~~le~ky~k~~~ply~kR~eiI~~ 72 (260)
++...|..+...+-...+.+++...-.+.+++-+|.+|+.++.+
T Consensus 580 ~i~~aq~~ve~~~~~~rk~ll~yddv~~~QR~~iy~~R~~~l~~ 623 (844)
T 1tf5_A 580 AVESSQKRVEGNNFDSRKQLLQYDDVLRQQREVIYKQRFEVIDS 623 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 56677888888888888888888888899999999999999975
No 22
>2yvc_D Neprilysin; protein-peptide complex, cell adhesion; 3.20A {Mus musculus}
Probab=23.27 E-value=24 Score=19.70 Aligned_cols=9 Identities=44% Similarity=0.375 Sum_probs=6.5
Q ss_pred CCCCccccc
Q 024913 1 MVADKGKKT 9 (260)
Q Consensus 1 ~~~~~~~~~ 9 (260)
|+||.|||.
T Consensus 12 inapkpkkk 20 (26)
T 2yvc_D 12 INAPKPKKK 20 (26)
T ss_pred ccCCCcchh
Confidence 678877764
No 23
>2fzt_A Hypothetical protein TM0693; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.05A {Thermotoga maritima} SCOP: a.46.3.1 PDB: 2g42_A
Probab=22.06 E-value=77 Score=22.58 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=19.5
Q ss_pred HHHHHHHhhhhhHHhhhhhhhcchhhH
Q 024913 51 VEQKYSEIRKPVYDKRNDIIKSIPDFW 77 (260)
Q Consensus 51 le~ky~k~~~ply~kR~eiI~~IP~FW 77 (260)
+++.-+....-++.+|.++++++|.==
T Consensus 15 IE~edyE~L~~LL~kREkLlk~L~~e~ 41 (79)
T 2fzt_A 15 IEKEDYETLLSLLNKRKELMEGLPKDK 41 (79)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHhhCcHHH
Confidence 456555666778889999998886533
No 24
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=21.63 E-value=2.2e+02 Score=20.63 Aligned_cols=28 Identities=14% Similarity=0.305 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024913 18 QIDSELVLSIEKLQEIQDELEKINEEAS 45 (260)
Q Consensus 18 ~~~~~v~~~i~~L~~lQ~e~~~le~~~~ 45 (260)
.+|++++..+..+..+|.++..+..+..
T Consensus 3 ~~~~e~Q~~i~~~~~l~~~~~~l~~q~~ 30 (117)
T 2zqm_A 3 NIPPQVQAMLGQLESYQQQLQLVVQQKQ 30 (117)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999998886553
No 25
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=20.11 E-value=3.2e+02 Score=22.52 Aligned_cols=12 Identities=17% Similarity=0.758 Sum_probs=6.6
Q ss_pred hhhcchhhHHHH
Q 024913 69 IIKSIPDFWLTA 80 (260)
Q Consensus 69 iI~~IP~FW~~v 80 (260)
+...+|.|+...
T Consensus 202 L~~eLp~l~~~~ 213 (251)
T 2fic_A 202 LQEELPSLWNSR 213 (251)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344567765543
Done!