Query 024914
Match_columns 260
No_of_seqs 258 out of 1769
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 08:26:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024914.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024914hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK04897 heat shock protein Ht 100.0 1.2E-32 2.5E-37 252.4 16.6 214 41-260 3-251 (298)
2 PRK02870 heat shock protein Ht 100.0 3.5E-30 7.6E-35 238.9 18.5 222 37-260 9-277 (336)
3 PRK02391 heat shock protein Ht 100.0 1.8E-29 3.8E-34 231.1 22.1 166 94-260 48-238 (296)
4 PRK03072 heat shock protein Ht 100.0 2.4E-29 5.2E-34 229.5 21.5 166 94-260 42-231 (288)
5 PRK01345 heat shock protein Ht 100.0 3.3E-29 7.1E-34 231.3 22.2 165 95-260 40-227 (317)
6 PRK03001 M48 family peptidase; 100.0 2.8E-29 6E-34 228.4 21.1 164 96-260 41-226 (283)
7 PRK03982 heat shock protein Ht 100.0 1.8E-28 3.9E-33 223.7 21.9 164 96-260 42-231 (288)
8 PRK05457 heat shock protein Ht 100.0 1.5E-28 3.2E-33 223.9 18.0 198 53-260 13-241 (284)
9 PRK01265 heat shock protein Ht 100.0 1.2E-27 2.7E-32 220.9 22.6 164 96-260 55-248 (324)
10 COG0501 HtpX Zn-dependent prot 99.9 4.3E-24 9.3E-29 193.9 19.2 168 90-259 61-254 (302)
11 PF01435 Peptidase_M48: Peptid 99.9 9.1E-24 2E-28 183.6 7.6 141 118-259 26-186 (226)
12 KOG2719 Metalloprotease [Gener 99.7 3.7E-17 8.1E-22 154.2 16.5 143 116-260 210-390 (428)
13 COG4783 Putative Zn-dependent 99.7 1E-16 2.2E-21 152.5 15.9 166 87-259 33-229 (484)
14 PF05569 Peptidase_M56: BlaR1 99.6 8E-15 1.7E-19 134.0 17.6 131 118-259 136-269 (299)
15 COG4784 Putative Zn-dependent 99.5 1.3E-13 2.8E-18 126.6 12.4 135 119-257 60-212 (479)
16 KOG2661 Peptidase family M48 [ 99.4 1.5E-12 3.3E-17 119.0 12.6 134 117-255 206-359 (424)
17 COG4219 MecR1 Antirepressor re 99.4 1.2E-11 2.7E-16 112.9 15.9 125 124-259 137-263 (337)
18 PF06114 DUF955: Domain of unk 97.9 0.00016 3.4E-09 55.8 9.7 35 162-200 28-62 (122)
19 PF04228 Zn_peptidase: Putativ 97.2 0.0024 5.2E-08 58.8 9.8 106 125-246 99-223 (292)
20 PF01863 DUF45: Protein of unk 97.1 0.0014 2.9E-08 56.4 6.4 69 124-197 113-181 (205)
21 PRK04351 hypothetical protein; 96.5 0.014 3E-07 48.7 8.2 67 122-192 3-73 (149)
22 COG1451 Predicted metal-depend 96.1 0.028 6.1E-07 49.8 8.2 71 125-200 125-195 (223)
23 smart00731 SprT SprT homologue 96.1 0.016 3.4E-07 47.8 6.1 32 162-193 41-72 (146)
24 PF13203 DUF2201_N: Putative m 95.9 0.031 6.8E-07 50.9 7.8 38 163-200 43-80 (292)
25 PF10263 SprT-like: SprT-like 95.6 0.081 1.8E-06 43.5 8.4 30 164-193 44-73 (157)
26 PF04450 BSP: Peptidase of pla 95.1 0.14 3E-06 44.9 8.6 51 145-196 57-112 (205)
27 PF13699 DUF4157: Domain of un 94.8 0.072 1.6E-06 39.6 5.3 58 131-194 9-75 (79)
28 PF10463 Peptidase_U49: Peptid 94.7 0.028 6E-07 49.3 3.2 42 178-246 99-140 (206)
29 COG2856 Predicted Zn peptidase 94.4 0.037 8E-07 48.8 3.2 32 159-194 55-86 (213)
30 PRK04860 hypothetical protein; 94.1 0.19 4.2E-06 42.3 6.9 66 125-193 9-76 (160)
31 PF10026 DUF2268: Predicted Zn 93.8 0.29 6.2E-06 42.3 7.6 70 124-194 4-79 (195)
32 PF14247 DUF4344: Domain of un 91.7 1.1 2.3E-05 39.8 8.4 54 135-192 32-104 (220)
33 PRK09672 phage exclusion prote 91.6 0.25 5.4E-06 45.6 4.3 42 178-246 163-204 (305)
34 COG3091 SprT Zn-dependent meta 90.8 0.74 1.6E-05 38.5 6.0 65 123-192 5-73 (156)
35 PF04298 Zn_peptidase_2: Putat 89.4 15 0.00033 32.7 14.4 67 127-198 41-107 (222)
36 COG4900 Predicted metallopepti 89.3 1.3 2.9E-05 35.2 6.0 71 122-193 6-93 (133)
37 TIGR00181 pepF oligoendopeptid 87.9 0.7 1.5E-05 46.3 4.7 44 145-194 348-392 (591)
38 COG3590 PepO Predicted metallo 87.8 0.11 2.4E-06 51.7 -1.1 48 143-193 443-500 (654)
39 PF02031 Peptidase_M7: Strepto 86.5 2.3 5E-05 34.6 5.9 39 150-193 52-90 (132)
40 PF12388 Peptidase_M57: Dual-a 86.3 0.87 1.9E-05 40.1 3.8 35 163-199 118-153 (211)
41 COG1164 Oligoendopeptidase F [ 86.2 0.98 2.1E-05 45.7 4.6 50 140-194 344-394 (598)
42 PF08325 WLM: WLM domain; Int 83.1 3.5 7.7E-05 35.5 6.1 21 175-195 77-97 (186)
43 TIGR02289 M3_not_pepF oligoend 82.2 1.8 3.9E-05 43.1 4.5 65 124-194 273-351 (549)
44 PF13485 Peptidase_MA_2: Pepti 82.0 1.7 3.7E-05 33.2 3.4 33 162-197 10-42 (128)
45 COG2738 Predicted Zn-dependent 79.1 14 0.0003 32.4 8.2 41 159-200 72-112 (226)
46 TIGR02290 M3_fam_3 oligoendope 78.6 2.6 5.7E-05 42.2 4.3 47 142-193 341-388 (587)
47 COG2321 Predicted metalloprote 78.3 5.4 0.00012 36.6 5.7 66 128-193 99-180 (295)
48 PF00413 Peptidase_M10: Matrix 77.7 1.6 3.5E-05 35.2 2.1 30 163-192 86-117 (154)
49 cd04279 ZnMc_MMP_like_1 Zinc-d 77.4 1.6 3.4E-05 35.9 2.0 16 177-192 101-116 (156)
50 cd04268 ZnMc_MMP_like Zinc-dep 76.8 1.6 3.5E-05 35.7 1.9 32 162-193 72-107 (165)
51 COG3864 Uncharacterized protei 76.1 3.7 8.1E-05 38.4 4.2 35 163-197 52-86 (396)
52 PF09768 Peptidase_M76: Peptid 75.9 5.1 0.00011 34.2 4.7 67 122-192 15-83 (173)
53 cd04270 ZnMc_TACE_like Zinc-de 75.6 2 4.3E-05 38.4 2.2 18 176-193 163-180 (244)
54 cd06460 M32_Taq Peptidase fami 75.0 24 0.00052 34.0 9.5 66 125-195 109-174 (396)
55 PF01433 Peptidase_M1: Peptida 72.4 12 0.00026 34.8 6.8 69 125-196 234-311 (390)
56 PF14891 Peptidase_M91: Effect 72.2 13 0.00029 31.3 6.4 21 178-200 101-121 (174)
57 TIGR02414 pepN_proteo aminopep 72.1 5.7 0.00012 42.0 4.9 69 126-197 223-300 (863)
58 PF13688 Reprolysin_5: Metallo 71.8 2.1 4.5E-05 36.3 1.4 17 176-192 138-154 (196)
59 cd06459 M3B_Oligoendopeptidase 70.5 3.7 8.1E-05 38.8 2.9 43 146-193 192-235 (427)
60 PF01447 Peptidase_M4: Thermol 70.3 2.4 5.2E-05 35.3 1.4 41 148-193 107-148 (150)
61 PF13582 Reprolysin_3: Metallo 69.7 2.6 5.6E-05 32.9 1.4 11 182-192 109-119 (124)
62 PF01431 Peptidase_M13: Peptid 68.1 3.8 8.2E-05 35.1 2.2 36 161-196 7-52 (206)
63 cd04269 ZnMc_adamalysin_II_lik 67.0 4.1 8.9E-05 34.5 2.2 16 177-192 128-143 (194)
64 PF13574 Reprolysin_2: Metallo 65.7 3.6 7.8E-05 34.7 1.6 13 181-193 112-124 (173)
65 PF01432 Peptidase_M3: Peptida 64.6 5.7 0.00012 38.3 2.9 45 148-193 197-255 (458)
66 TIGR02412 pepN_strep_liv amino 63.9 17 0.00036 38.3 6.4 68 127-197 230-304 (831)
67 cd04267 ZnMc_ADAM_like Zinc-de 63.4 3 6.5E-05 35.3 0.7 16 177-192 130-145 (192)
68 COG4324 Predicted aminopeptida 62.7 6.1 0.00013 36.3 2.5 34 167-200 181-220 (376)
69 PF01421 Reprolysin: Reprolysi 62.5 6.7 0.00015 33.4 2.7 17 176-192 127-143 (199)
70 PF05572 Peptidase_M43: Pregna 62.1 4.6 0.0001 33.6 1.6 29 164-192 52-81 (154)
71 cd04278 ZnMc_MMP Zinc-dependen 61.9 3.9 8.5E-05 33.6 1.1 31 162-192 85-119 (157)
72 KOG1047 Bifunctional leukotrie 61.8 10 0.00022 38.1 4.0 48 142-196 256-304 (613)
73 cd06258 Peptidase_M3_like The 61.7 7.9 0.00017 36.1 3.2 47 147-194 111-168 (365)
74 cd06456 M3A_DCP_Oligopeptidase 61.5 8.1 0.00017 37.4 3.3 43 150-193 165-221 (422)
75 cd06455 M3A_TOP Peptidase M3 T 61.0 6.9 0.00015 38.3 2.8 17 176-193 260-276 (472)
76 PRK14015 pepN aminopeptidase N 59.1 12 0.00026 39.7 4.4 19 179-197 295-313 (875)
77 KOG1046 Puromycin-sensitive am 59.1 21 0.00046 37.9 6.2 64 131-197 269-341 (882)
78 cd04271 ZnMc_ADAM_fungal Zinc- 58.8 3.3 7.1E-05 36.7 0.1 11 182-192 147-157 (228)
79 cd00203 ZnMc Zinc-dependent me 58.6 4.6 9.9E-05 32.9 0.9 16 177-192 93-108 (167)
80 PF10023 DUF2265: Predicted am 57.3 6.4 0.00014 37.1 1.7 33 168-200 150-188 (337)
81 cd04272 ZnMc_salivary_gland_MP 56.9 6.9 0.00015 34.1 1.8 14 179-192 144-157 (220)
82 PF13583 Reprolysin_4: Metallo 56.9 5.8 0.00013 34.5 1.3 16 182-197 139-155 (206)
83 TIGR03793 TOMM_pelo TOMM prope 56.7 38 0.00083 25.0 5.5 55 121-185 15-76 (77)
84 PF02074 Peptidase_M32: Carbox 56.6 45 0.00099 33.1 7.6 63 126-193 210-272 (494)
85 KOG3624 M13 family peptidase [ 52.9 11 0.00023 38.6 2.7 47 147-196 478-534 (687)
86 smart00235 ZnMc Zinc-dependent 51.6 8.1 0.00018 30.8 1.3 12 181-192 87-98 (140)
87 TIGR02411 leuko_A4_hydro leuko 49.0 10 0.00022 38.4 1.8 34 162-197 262-296 (601)
88 KOG3314 Ku70-binding protein [ 46.8 64 0.0014 27.6 5.9 37 157-196 71-107 (194)
89 cd04327 ZnMc_MMP_like_3 Zinc-d 46.1 16 0.00034 31.3 2.3 16 178-193 90-105 (198)
90 cd04276 ZnMc_MMP_like_2 Zinc-d 46.0 15 0.00032 32.0 2.1 31 163-193 92-129 (197)
91 PF02163 Peptidase_M50: Peptid 45.6 15 0.00032 30.9 2.1 13 180-192 7-19 (192)
92 cd04277 ZnMc_serralysin_like Z 45.0 15 0.00032 30.9 2.0 35 163-197 94-131 (186)
93 TIGR02421 QEGLA conserved hypo 42.6 44 0.00096 31.9 4.9 64 122-192 136-201 (366)
94 PF01400 Astacin: Astacin (Pep 41.7 48 0.0011 28.3 4.7 62 124-192 23-91 (191)
95 cd04273 ZnMc_ADAMTS_like Zinc- 41.5 4.9 0.00011 34.7 -1.6 13 180-192 140-152 (207)
96 PF12315 DUF3633: Protein of u 40.0 18 0.00039 31.9 1.7 21 173-193 86-106 (212)
97 cd03082 TRX_Fd_NuoE_W_FDH_beta 39.9 94 0.002 22.3 5.3 52 127-185 19-70 (72)
98 PF04293 SpoVR: SpoVR like pro 39.2 32 0.00069 33.5 3.4 70 123-192 9-111 (426)
99 PF12725 DUF3810: Protein of u 38.7 19 0.0004 33.6 1.7 18 175-192 191-208 (318)
100 PF08014 DUF1704: Domain of un 38.4 60 0.0013 30.8 5.1 67 122-195 111-181 (349)
101 cd05709 S2P-M50 Site-2 proteas 37.5 23 0.00051 29.5 2.0 12 181-192 9-20 (180)
102 cd06161 S2P-M50_SpoIVFB SpoIVF 37.3 23 0.0005 30.7 2.0 13 180-192 38-50 (208)
103 PRK13267 archaemetzincin-like 36.9 96 0.0021 26.5 5.7 14 179-192 124-137 (179)
104 cd06163 S2P-M50_PDZ_RseP-like 35.6 23 0.0005 30.3 1.7 11 182-192 11-21 (182)
105 COG3930 Uncharacterized protei 35.5 73 0.0016 30.5 5.0 47 142-190 210-256 (434)
106 PRK10911 oligopeptidase A; Pro 35.2 29 0.00064 35.7 2.7 18 175-193 459-476 (680)
107 TIGR03296 M6dom_TIGR03296 M6 f 34.9 8.9 0.00019 35.0 -1.0 13 181-193 166-178 (286)
108 COG0308 PepN Aminopeptidase N 34.1 51 0.0011 34.9 4.3 70 124-197 246-324 (859)
109 cd06164 S2P-M50_SpoIVFB_CBS Sp 34.0 28 0.00061 30.8 2.0 13 180-192 53-65 (227)
110 cd03063 TRX_Fd_FDH_beta TRX-li 32.7 1.6E+02 0.0034 22.4 5.7 68 122-198 16-87 (92)
111 PF09471 Peptidase_M64: IgA Pe 30.7 31 0.00066 31.4 1.7 15 178-192 214-228 (264)
112 PF01457 Peptidase_M8: Leishma 30.3 48 0.001 32.9 3.2 33 164-196 194-226 (521)
113 PF06861 BALF1: BALF1 protein; 30.3 35 0.00076 29.2 1.9 24 174-197 126-149 (182)
114 cd06160 S2P-M50_like_2 Unchara 29.5 40 0.00087 28.8 2.2 14 179-192 40-53 (183)
115 PF13398 Peptidase_M50B: Pepti 29.4 38 0.00082 29.2 2.0 15 178-192 20-34 (200)
116 COG4227 Antirestriction protei 29.1 32 0.00069 31.6 1.5 22 175-197 198-219 (316)
117 PF06262 DUF1025: Possibl zinc 28.9 54 0.0012 25.3 2.6 34 163-196 50-89 (97)
118 cd06159 S2P-M50_PDZ_Arch Uncha 28.9 36 0.00078 30.9 1.8 14 179-192 117-130 (263)
119 PRK11767 SpoVR family protein; 28.7 73 0.0016 31.7 4.0 69 124-192 19-121 (498)
120 cd04280 ZnMc_astacin_like Zinc 28.6 86 0.0019 26.4 4.1 31 156-193 57-87 (180)
121 COG1905 NuoE NADH:ubiquinone o 28.5 1.2E+02 0.0025 25.7 4.7 55 126-185 94-154 (160)
122 PF14521 Aspzincin_M35: Lysine 28.1 84 0.0018 25.7 3.8 37 163-199 77-120 (148)
123 PF13402 M60-like: Peptidase M 26.9 2.3E+02 0.0049 25.5 6.8 32 164-195 199-234 (307)
124 KOG3607 Meltrins, fertilins an 26.0 1E+02 0.0022 32.2 4.7 16 177-192 320-335 (716)
125 cd06162 S2P-M50_PDZ_SREBP Ster 25.8 44 0.00095 30.7 1.8 13 180-192 135-147 (277)
126 PRK05988 formate dehydrogenase 25.0 87 0.0019 26.1 3.4 56 126-185 92-152 (156)
127 COG2317 Zn-dependent carboxype 24.4 3.2E+02 0.007 27.2 7.5 63 125-193 209-272 (497)
128 COG3824 Predicted Zn-dependent 24.3 39 0.00084 27.4 1.0 29 164-192 86-121 (136)
129 cd03081 TRX_Fd_NuoE_FDH_gamma 24.1 2.8E+02 0.0061 20.0 5.7 33 153-185 46-78 (80)
130 cd06461 M2_ACE Peptidase famil 23.7 1.8E+02 0.004 28.7 5.8 63 124-192 185-259 (477)
131 COG4307 Uncharacterized protei 23.4 67 0.0015 29.6 2.5 42 149-192 131-183 (349)
132 PRK07571 bidirectional hydroge 23.2 2.3E+02 0.005 24.0 5.6 56 126-185 105-165 (169)
133 PF04072 LCM: Leucine carboxyl 23.2 63 0.0014 27.1 2.2 30 157-186 152-181 (183)
134 COG4823 AbiF Abortive infectio 23.0 51 0.0011 30.2 1.7 14 177-190 89-102 (299)
135 cd04283 ZnMc_hatching_enzyme Z 22.9 45 0.00098 28.6 1.3 13 181-193 78-90 (182)
136 cd03083 TRX_Fd_NuoE_hoxF TRX-l 22.9 2.9E+02 0.0063 19.9 5.5 33 154-186 47-79 (80)
137 cd04281 ZnMc_BMP1_TLD Zinc-dep 22.9 41 0.00088 29.3 1.0 13 181-193 88-100 (200)
138 cd06158 S2P-M50_like_1 Unchara 22.1 59 0.0013 27.6 1.8 13 180-192 9-21 (181)
139 KOG3714 Meprin A metalloprotea 22.0 43 0.00094 32.3 1.1 32 155-193 140-172 (411)
140 PF10460 Peptidase_M30: Peptid 21.3 77 0.0017 30.3 2.6 30 164-193 120-152 (366)
141 PHA02456 zinc metallopeptidase 21.0 56 0.0012 26.1 1.4 27 163-193 66-92 (141)
No 1
>PRK04897 heat shock protein HtpX; Provisional
Probab=100.00 E-value=1.2e-32 Score=252.39 Aligned_cols=214 Identities=18% Similarity=0.226 Sum_probs=156.3
Q ss_pred cccccccc-eeeeeeeeeeehhhhccCCCcccccCccchHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHcCCccccCC
Q 024914 41 FGSMKQSR-RMRLVPVCRAAASVVFRDLDADDFRHPLDKQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGTSVLVSK 119 (260)
Q Consensus 41 ~~~~~~~~-~~~~v~~~~~~~~~~l~gl~~~~~~hp~d~~~~~~l~~lpgl~~~~~~~~~~~~~~~~~~~~~g~~v~v~~ 119 (260)
|.|+++|+ ||.+++ ..+...+.+.|...+.+..+ +......+..+. .++..++.++....+..+..+ ..+++|
T Consensus 3 ~~~~~~n~~~t~~ll-~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-a~~v~~ 76 (298)
T PRK04897 3 YEQIASNKRKTVFLL-VVFFLLLALVGAAVGYLFLN-SGLGGLIIALII---GVIYALIMIFQSTNVVMSMNH-AREVTE 76 (298)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcccc-cchhHHHHHHHH---HHHHHHHHHHhhHHHHHHhCC-CEECCh
Confidence 67899999 887665 55555556655433321111 111111111111 235567888888888888775 568899
Q ss_pred CChHHHHHHHHHHHHHhCCCCCcEEEEeCCCCceEEeeccCCCCEEEEcHHHHhcCCHHHHHHHHHHHHHHHHccChHHH
Q 024914 120 NQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWL 199 (260)
Q Consensus 120 ~~~p~L~~~v~~l~~~l~i~~p~vyv~~~~~~NAfa~G~~~~~~~Ivi~~~Ll~~L~~~EL~aVLaHElgHi~~~H~~~~ 199 (260)
+|.|++++.++++|++.|+|.|++|+++++.+|||++|.++.++.|++++||++.+++||++||+|||+||++++|..++
T Consensus 77 ~~~p~L~~~v~~la~~~gip~p~v~v~~~~~~NAfa~G~~~~~~~v~vt~gLl~~l~~~El~aVlAHElgHi~~~d~~~~ 156 (298)
T PRK04897 77 EEAPELWHIVEDMAMVAQIPMPRVFIIDDPSPNAFATGSSPKNAAVAVTTGLLAIMNREELEGVIGHEISHIRNYDIRLS 156 (298)
T ss_pred hhhHHHHHHHHHHHHHcCCCCCcEEEecCCCCceEEeccCCCCcEEEeehHHHhhCCHHHHHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999877788999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHH----------hch------------h-H---HHHH------HHHHH--HHHHHHHHHHHHHHHHHHHHh
Q 024914 200 TFANILTLGAY----------TIP------------G-I---GGMI------AQSLE--EQLFRWLRAAELTCDRAALLV 245 (260)
Q Consensus 200 ~~~~~l~~~~~----------~~p------------~-l---g~~~------~~~l~--~~l~~~sR~~E~~ADr~a~~~ 245 (260)
++...+..... +.. . . ..++ ..++. .....+||.+|++||++|+++
T Consensus 157 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ll~~~~SR~rE~~AD~~A~~l 236 (298)
T PRK04897 157 TIAVALASAITLLSDIAGRMMWWGGGSRRRDDDRDGGGLQIILLIVSLLLLILAPLAATLIQLAISRQREYLADASSVEL 236 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 76543221110 000 0 0 0000 01111 123578999999999999999
Q ss_pred cCChHHHHHHHHhcC
Q 024914 246 SQDPKLGAVHLWLIN 260 (260)
Q Consensus 246 ~gdp~a~~sAL~kI~ 260 (260)
++||+++++||.|+.
T Consensus 237 t~~p~~La~AL~KL~ 251 (298)
T PRK04897 237 TRNPQGLISALEKIS 251 (298)
T ss_pred hCCHHHHHHHHHHHH
Confidence 999999999999973
No 2
>PRK02870 heat shock protein HtpX; Provisional
Probab=99.97 E-value=3.5e-30 Score=238.94 Aligned_cols=222 Identities=23% Similarity=0.282 Sum_probs=154.4
Q ss_pred cccccccc-cccc-eeeeeeeeeeehhhhccCCCccc------ccCc-cchHHH--HHHHhCCCch------HHHHHHHH
Q 024914 37 GNFKFGSM-KQSR-RMRLVPVCRAAASVVFRDLDADD------FRHP-LDKQNT--LLLRAIPGLN------DLGRALLG 99 (260)
Q Consensus 37 ~~~~~~~~-~~~~-~~~~v~~~~~~~~~~l~gl~~~~------~~hp-~d~~~~--~~l~~lpgl~------~~~~~~~~ 99 (260)
|+-.|++. ++|+ ||.+++ ..+...+.+.|...+- +.|+ +....+ ..++.+|.-. .++..++.
T Consensus 9 ~~~~~~~~i~~n~~kt~~l~-~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (336)
T PRK02870 9 GSVDWRKVIRRNRLKTRAVI-ATYLAIFLFIGLLVDAIRIASEYPAASLGKALLALLTFQIFPTATLIMSLVAVISILVT 87 (336)
T ss_pred ccccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhcccccccccchhhhhhhhhccccchHHHHHHHHHHHHHHHH
Confidence 33445554 8888 998776 5555777777765542 3332 222222 2234444211 11224456
Q ss_pred HHHHHHHHHHHcCCccccCCC-----ChHHHHHHHHHHHHHhCCC-CCcEEEEeCCCCceEEeeccCCCCEEEEcHHHHh
Q 024914 100 TVTEQIMLLENIGTSVLVSKN-----QLPELHQLMTEAAEILNLE-APDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVE 173 (260)
Q Consensus 100 ~~~~~~~~~~~~g~~v~v~~~-----~~p~L~~~v~~l~~~l~i~-~p~vyv~~~~~~NAfa~G~~~~~~~Ivi~~~Ll~ 173 (260)
+++...+.++.++.. .++|+ +.|+|++.++++|++.|+| .|++|+++++.+|||++|+++.++.|++++||++
T Consensus 88 y~~~~~~~l~~~~a~-~I~~~~~~p~~~~~L~~~ve~La~~ag~p~~p~V~vi~~~~~NAFA~G~~~~~~~Ivvt~GLL~ 166 (336)
T PRK02870 88 FQNFDKIMLSGTEYK-EITPENALSLQERQLYNVVEELLVAAGLRFMPKVYIIDAPYMNAFASGYSEKSAMVAITTGLLE 166 (336)
T ss_pred HHhhHHHHHHHcCCE-EcCCCCCCchhhHHHHHHHHHHHHHcCCCCCCeEEEEcCCCCceEEecCCCCCcEEEEehHHhh
Confidence 666666777766543 44554 4779999999999999999 8999999999999999998666789999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH--------H-hch--------h--HHHH----HHHHHH-HHHHH
Q 024914 174 LLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGA--------Y-TIP--------G--IGGM----IAQSLE-EQLFR 229 (260)
Q Consensus 174 ~L~~~EL~aVLaHElgHi~~~H~~~~~~~~~l~~~~--------~-~~p--------~--lg~~----~~~~l~-~~l~~ 229 (260)
.+++||+++|+|||+||++++|....+....+.... + .+. . .+.+ +...+. ...+.
T Consensus 167 ~L~~dEL~aVlAHELgHik~~di~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~l~~~~~~~~~ll~~~ 246 (336)
T PRK02870 167 KLDRDELQAVMAHELSHIRHGDIRLTLCVGVLSNIMLIVADFLFYSFMGNRRNSGANRARMIILILRYVLPILTVLLMLF 246 (336)
T ss_pred hCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998776543322110 0 000 0 0101 111111 23457
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHhcC
Q 024914 230 WLRAAELTCDRAALLVSQDPKLGAVHLWLIN 260 (260)
Q Consensus 230 ~sR~~E~~ADr~a~~~~gdp~a~~sAL~kI~ 260 (260)
+||.+||+||++|+++++||+++++||.||.
T Consensus 247 iSR~rEy~AD~~Aa~ltg~p~aLasAL~KL~ 277 (336)
T PRK02870 247 LSRTREYMADAGAVELMRDNEPMARALQKIS 277 (336)
T ss_pred HHHHHHHHHhHHHHHHhCCHHHHHHHHHHHH
Confidence 8999999999999999999999999999983
No 3
>PRK02391 heat shock protein HtpX; Provisional
Probab=99.97 E-value=1.8e-29 Score=231.11 Aligned_cols=166 Identities=31% Similarity=0.431 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccCCCChHHHHHHHHHHHHHhCCCCCcEEEEeCCCCceEEeeccCCCCEEEEcHHHHh
Q 024914 94 GRALLGTVTEQIMLLENIGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVE 173 (260)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~g~~v~v~~~~~p~L~~~v~~l~~~l~i~~p~vyv~~~~~~NAfa~G~~~~~~~Ivi~~~Ll~ 173 (260)
+..++.+++...+..+.++. .+++|.++|++++.++++|++.|++.|++|+++++.+|||++|.+..++.|+++++|++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~L~~~v~~la~~~~~~~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~gLl~ 126 (296)
T PRK02391 48 GFLLAQYFFSDKLALWSMGA-RIVSEDEYPELHAMVERLCALADLPKPRVAVADSDVPNAFATGRSPKNAVVCVTTGLMR 126 (296)
T ss_pred HHHHHHHHHhHHHHHHHcCC-EECChhhCHHHHHHHHHHHHHcCCCCCcEEEEeCCCCceEEecCCCCCcEEEecHHHHh
Confidence 33456777777777777764 58899999999999999999999999999999999999999998777889999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHh-------ch--------h-HHH-H---HHH----HHH-HHHH
Q 024914 174 LLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYT-------IP--------G-IGG-M---IAQ----SLE-EQLF 228 (260)
Q Consensus 174 ~L~~~EL~aVLaHElgHi~~~H~~~~~~~~~l~~~~~~-------~p--------~-lg~-~---~~~----~l~-~~l~ 228 (260)
.+++||+++|+|||+||++++|...+++..++..+... .. . .+. + +.. .+. ....
T Consensus 127 ~L~~~El~aVlaHElgHi~~~di~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 206 (296)
T PRK02391 127 RLDPDELEAVLAHELSHVKNRDVAVMTIASFLSTIAFLIVRWGFYFGGFGGRGGGGGGGGILVVILVSLVVWAISFLLIR 206 (296)
T ss_pred hCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988765443322111 00 0 000 1 111 111 1245
Q ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHhcC
Q 024914 229 RWLRAAELTCDRAALLVSQDPKLGAVHLWLIN 260 (260)
Q Consensus 229 ~~sR~~E~~ADr~a~~~~gdp~a~~sAL~kI~ 260 (260)
.+||.+||+||++|+.+++||+++++||.||.
T Consensus 207 ~~SR~rE~~AD~~Aa~ltg~p~~LasAL~KL~ 238 (296)
T PRK02391 207 ALSRYREFAADRGAAIITGRPSALASALMKIS 238 (296)
T ss_pred HHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHH
Confidence 78999999999999999999999999999973
No 4
>PRK03072 heat shock protein HtpX; Provisional
Probab=99.97 E-value=2.4e-29 Score=229.51 Aligned_cols=166 Identities=20% Similarity=0.271 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccCCCChHHHHHHHHHHHHHhCCCCCcEEEEeCCCCceEEeeccCCCCEEEEcHHHHh
Q 024914 94 GRALLGTVTEQIMLLENIGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVE 173 (260)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~g~~v~v~~~~~p~L~~~v~~l~~~l~i~~p~vyv~~~~~~NAfa~G~~~~~~~Ivi~~~Ll~ 173 (260)
+..++.+++...+..+.++ ..+++|.++|+|++.++++|++.|++.|++|+++++.+|||++|..+++..|+++++|++
T Consensus 42 ~~~~~~~~~s~~~~~~~~~-~~~v~~~~~p~L~~~v~~la~~~g~p~p~vyv~~~~~~NAFa~G~~~~~~~v~vt~gLl~ 120 (288)
T PRK03072 42 GMNAYVYWNSDKLALRAMH-AQPVSEVQAPAMYRIVRELSTAARQPMPRLYISPTAAPNAFATGRNPRNAAVCCTEGILQ 120 (288)
T ss_pred HHHHHHHHHhHHHHHHhcC-CEECChhhhHHHHHHHHHHHHHcCCCCCCEEEecCCCCceEEecCCCCCcEEEecHHHHH
Confidence 4456777777777777775 457899999999999999999999999999999999999999997666678999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH-------Hhc-----------hh-HHHHHH---HH--HHHHHHH
Q 024914 174 LLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGA-------YTI-----------PG-IGGMIA---QS--LEEQLFR 229 (260)
Q Consensus 174 ~L~~~EL~aVLaHElgHi~~~H~~~~~~~~~l~~~~-------~~~-----------p~-lg~~~~---~~--l~~~l~~ 229 (260)
.+++||++||+|||+||++++|..++++...+.... .+. +. ++.++. .. .......
T Consensus 121 ~l~~~El~aVlAHElgHi~~~d~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 200 (288)
T PRK03072 121 ILNERELRGVLGHELSHVYNRDILISSVAGALASVITYLANMAMFAGMFGGRRDNDGPNPLALLLVSLLGPIAATVIQLA 200 (288)
T ss_pred hCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887654322110 010 00 111111 11 1123467
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHhcC
Q 024914 230 WLRAAELTCDRAALLVSQDPKLGAVHLWLIN 260 (260)
Q Consensus 230 ~sR~~E~~ADr~a~~~~gdp~a~~sAL~kI~ 260 (260)
+||.+|++||++|+++++||+++++||.||.
T Consensus 201 ~SR~rE~~AD~~A~~l~~~p~~La~AL~KL~ 231 (288)
T PRK03072 201 ISRSREYQADESGAELTGDPLALASALRKIS 231 (288)
T ss_pred HHhHHHHHHhHHHHHHhCCHHHHHHHHHHHH
Confidence 8999999999999999999999999999973
No 5
>PRK01345 heat shock protein HtpX; Provisional
Probab=99.97 E-value=3.3e-29 Score=231.34 Aligned_cols=165 Identities=24% Similarity=0.319 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHHHHHcCCccccCCCChHHHHHHHHHHHHHhCCCCCcEEEEeCCCCceEEeeccCCCCEEEEcHHHHhc
Q 024914 95 RALLGTVTEQIMLLENIGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVEL 174 (260)
Q Consensus 95 ~~~~~~~~~~~~~~~~~g~~v~v~~~~~p~L~~~v~~l~~~l~i~~p~vyv~~~~~~NAfa~G~~~~~~~Ivi~~~Ll~~ 174 (260)
..++.++....+....++ +.+++|.+.|++++.++++|++.|++.|++|+++++.+|||++|.+++++.|+++++|++.
T Consensus 40 ~~~~~~~~~~~~~~~~~~-a~~v~~~~~p~L~~~v~~La~~agi~~p~v~vid~~~~NAFa~G~~~~~~~V~vt~gLL~~ 118 (317)
T PRK01345 40 MNLFSYWNSDKMVLRMYG-AQEVDERSAPELYRMVRDLARRAGLPMPKVYIIDNPQPNAFATGRNPENAAVAATTGLLQR 118 (317)
T ss_pred HHHHHHHHhHHHHHHHcC-CeECCcccCHHHHHHHHHHHHHcCCCCCcEEEEcCCCcceEEecCCCCCeEEEechHHHhh
Confidence 345666666666666665 4578999999999999999999999999999999999999999976667899999999999
Q ss_pred CCHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH-------hch-----------hHHHHH---HHHHH--HHHHHHH
Q 024914 175 LTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAY-------TIP-----------GIGGMI---AQSLE--EQLFRWL 231 (260)
Q Consensus 175 L~~~EL~aVLaHElgHi~~~H~~~~~~~~~l~~~~~-------~~p-----------~lg~~~---~~~l~--~~l~~~s 231 (260)
+++||+++|||||+||++++|..++++...+..... .+. .++.++ ..++. .....||
T Consensus 119 L~~dEL~aVlAHElgHi~~~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~S 198 (317)
T PRK01345 119 LSPEEVAGVMAHELAHVKNRDTLTMTITATLAGAISMLANFAFFFGGNRENNNGPLGLVGTLAAMIVAPLAAMLVQMAIS 198 (317)
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998876543221110 000 011111 11111 2335789
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHhcC
Q 024914 232 RAAELTCDRAALLVSQDPKLGAVHLWLIN 260 (260)
Q Consensus 232 R~~E~~ADr~a~~~~gdp~a~~sAL~kI~ 260 (260)
|.+|++||++|++.++||+++++||.|++
T Consensus 199 R~rE~~AD~~A~~ltg~p~~L~~AL~KL~ 227 (317)
T PRK01345 199 RTREYAADRRGAEICGNPLWLASALGKIE 227 (317)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999999999999999999974
No 6
>PRK03001 M48 family peptidase; Provisional
Probab=99.97 E-value=2.8e-29 Score=228.44 Aligned_cols=164 Identities=23% Similarity=0.309 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHHHHcCCccccCCCChHHHHHHHHHHHHHhCCCCCcEEEEeCCCCceEEeeccCCCCEEEEcHHHHhcC
Q 024914 96 ALLGTVTEQIMLLENIGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELL 175 (260)
Q Consensus 96 ~~~~~~~~~~~~~~~~g~~v~v~~~~~p~L~~~v~~l~~~l~i~~p~vyv~~~~~~NAfa~G~~~~~~~Ivi~~~Ll~~L 175 (260)
.++.++....+....++. .++++.|.|++++.++++|++.|++.|++|+++++.+|||++|.+.+++.|+++++|++.+
T Consensus 41 ~~~~~~~~~~~i~~~~~~-~~l~~~~~p~L~~~v~~la~~~g~~~p~v~v~~~~~~NAfa~G~~~~~~~Ivvt~gLl~~l 119 (283)
T PRK03001 41 NFFSYWFSDKMVLKMYNA-QEVDENTAPQFYRMVRELAQRAGLPMPKVYLINEDQPNAFATGRNPEHAAVAATTGILRVL 119 (283)
T ss_pred HHHHHHHhHHHHHHHcCC-EECCccccHHHHHHHHHHHHHcCCCCCeEEEecCCCcceEEecCCCCCeEEEecHHHHhhC
Confidence 445555555556666665 6788999999999999999999999999999999999999999766667899999999999
Q ss_pred CHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH-------hc----------hhHHHHHH---HH--HHHHHHHHHHH
Q 024914 176 TRKELQAVLAHELGHLKCDHGVWLTFANILTLGAY-------TI----------PGIGGMIA---QS--LEEQLFRWLRA 233 (260)
Q Consensus 176 ~~~EL~aVLaHElgHi~~~H~~~~~~~~~l~~~~~-------~~----------p~lg~~~~---~~--l~~~l~~~sR~ 233 (260)
++||++||+|||+||++++|...+++...+..... ++ +....++. .. .......|||.
T Consensus 120 ~~~El~aVlAHElgHi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SR~ 199 (283)
T PRK03001 120 SEREIRGVMAHELAHVKHRDILISTISATMAGAISALANFAMFFGGRDENGRPVNPIAGIAVAILAPLAASLIQMAISRA 199 (283)
T ss_pred CHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999998876543221111 10 01111111 11 11234578999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhcC
Q 024914 234 AELTCDRAALLVSQDPKLGAVHLWLIN 260 (260)
Q Consensus 234 ~E~~ADr~a~~~~gdp~a~~sAL~kI~ 260 (260)
+|++||++|++.++||+++++||.|++
T Consensus 200 ~E~~AD~~a~~l~~~p~~l~~AL~Kl~ 226 (283)
T PRK03001 200 REFEADRGGARISGDPQALASALDKIH 226 (283)
T ss_pred HHHHHhHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999999999999999973
No 7
>PRK03982 heat shock protein HtpX; Provisional
Probab=99.96 E-value=1.8e-28 Score=223.66 Aligned_cols=164 Identities=24% Similarity=0.344 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHHHHcCCccccCCCChHHHHHHHHHHHHHhCCCCCcEEEEeCCCCceEEeeccCCCCEEEEcHHHHhcC
Q 024914 96 ALLGTVTEQIMLLENIGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELL 175 (260)
Q Consensus 96 ~~~~~~~~~~~~~~~~g~~v~v~~~~~p~L~~~v~~l~~~l~i~~p~vyv~~~~~~NAfa~G~~~~~~~Ivi~~~Ll~~L 175 (260)
.++.+++...+..... +..++++.+.|++++.++++|++.|++.|++|+++++.+|||++|.+++++.|+++++|++.+
T Consensus 42 ~~~~~~~~~~i~~~~~-~~~~l~~~~~p~L~~~v~~la~~~g~~~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~gLl~~l 120 (288)
T PRK03982 42 NLISYYYSDKIVLASY-NARIVSEEEAPELYRIVERLAERANIPKPKVAIVPTQTPNAFATGRDPKHAVVAVTEGILNLL 120 (288)
T ss_pred HHHHHHHhHHHHHHhc-CCEECChhhhHHHHHHHHHHHHHcCCCCCeEEEEeCCCcceEEeccCCCCeEEEeehHHHhhC
Confidence 4455666666555544 455778889999999999999999999999999999999999999876678899999999999
Q ss_pred CHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH----H---h---ch-----------hHHHHHH---HHH--HHHHHH
Q 024914 176 TRKELQAVLAHELGHLKCDHGVWLTFANILTLGA----Y---T---IP-----------GIGGMIA---QSL--EEQLFR 229 (260)
Q Consensus 176 ~~~EL~aVLaHElgHi~~~H~~~~~~~~~l~~~~----~---~---~p-----------~lg~~~~---~~l--~~~l~~ 229 (260)
++||++||+|||+||++++|..++++...+.... . + +. .++.++. ..+ ......
T Consensus 121 ~~~El~AVlAHElgHi~~~h~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 200 (288)
T PRK03982 121 NEDELEGVIAHELTHIKNRDTLIQTIAATLAGAIMYLAQWLSWGLWFGGGGRDDRNGGNPIGSLLLIILAPIAATLIQFA 200 (288)
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887654321110 0 0 00 0111111 011 122357
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHhcC
Q 024914 230 WLRAAELTCDRAALLVSQDPKLGAVHLWLIN 260 (260)
Q Consensus 230 ~sR~~E~~ADr~a~~~~gdp~a~~sAL~kI~ 260 (260)
+||.+|++||++|++.+++|+++++||.|++
T Consensus 201 ~SR~~E~~AD~~A~~~~~~p~~l~~aL~kL~ 231 (288)
T PRK03982 201 ISRQREFSADEGGARLTGNPLALANALQKLE 231 (288)
T ss_pred HhHHHHHHHhHHHHHHhCCHHHHHHHHHHHH
Confidence 8999999999999999999999999999974
No 8
>PRK05457 heat shock protein HtpX; Provisional
Probab=99.96 E-value=1.5e-28 Score=223.92 Aligned_cols=198 Identities=20% Similarity=0.277 Sum_probs=140.9
Q ss_pred eeeeeeehhhhccCCCcccccCccchHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHcCCccccC-CCC--hHHHHHHH
Q 024914 53 VPVCRAAASVVFRDLDADDFRHPLDKQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGTSVLVS-KNQ--LPELHQLM 129 (260)
Q Consensus 53 v~~~~~~~~~~l~gl~~~~~~hp~d~~~~~~l~~lpgl~~~~~~~~~~~~~~~~~~~~~g~~v~v~-~~~--~p~L~~~v 129 (260)
+++..++....+.|+.. + .+......+..+.| ++..++.++...++..+.++.. .++ |.+ .|.+++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~a~-~i~~~~~~~~~~L~~~v 83 (284)
T PRK05457 13 AVMLVLGIVLSLLGVQS--Y---LNLGGLLVFAAVFG---FGGSFISLLMSKWMAKRSTGAE-VIEQPRNETERWLVETV 83 (284)
T ss_pred HHHHHHHHHHHHHHHHH--H---hhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCCe-ECCCCCCchHHHHHHHH
Confidence 44566666666666543 2 23333333333332 2556778888888877777644 443 433 44699999
Q ss_pred HHHHHHhCCCCCcEEEEeCCCCceEEeeccCCCCEEEEcHHHHhcCCHHHHHHHHHHHHHHHHccChHHHHHHHHH-HHH
Q 024914 130 TEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANIL-TLG 208 (260)
Q Consensus 130 ~~l~~~l~i~~p~vyv~~~~~~NAfa~G~~~~~~~Ivi~~~Ll~~L~~~EL~aVLaHElgHi~~~H~~~~~~~~~l-~~~ 208 (260)
+++|++.|+|.|++|+++++.+|||++|.++++..|++++||++.+|+||++||+|||+||++++|....+++..+ ...
T Consensus 84 ~~la~~~g~p~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~gLl~~L~~~El~aVlAHElgHi~~~d~~~~~l~~~~~~~~ 163 (284)
T PRK05457 84 ARQARQAGIGMPEVAIYHSPEINAFATGASKNNSLVAVSTGLLQNMSRDEVEAVLAHEISHIANGDMVTMTLIQGVVNTF 163 (284)
T ss_pred HHHHHhCCCCCCCEEEEeCCCceEEEecCCCCCeEEEeehHHhhhCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999877788899999999999999999999999999999999887544221 110
Q ss_pred --------HH----hc------hhHHHH----H----HHHHH-HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHhcC
Q 024914 209 --------AY----TI------PGIGGM----I----AQSLE-EQLFRWLRAAELTCDRAALLVSQDPKLGAVHLWLIN 260 (260)
Q Consensus 209 --------~~----~~------p~lg~~----~----~~~l~-~~l~~~sR~~E~~ADr~a~~~~gdp~a~~sAL~kI~ 260 (260)
.. +. ++++.+ + ...+. .....+||.+||+||++|++.++ |+++++||.||.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ll~~~~SR~rEy~AD~~Aa~ltg-p~~L~~AL~KL~ 241 (284)
T PRK05457 164 VIFLSRIIAQIVDRFVSGNEEGNGIGYFIVSIVLEIVFGILASIIVMWFSRHREFRADAGGAKLAG-REKMIAALQRLK 241 (284)
T ss_pred HHHHHHHHHHHHHhhcccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhC-HHHHHHHHHHHH
Confidence 00 00 111111 1 11111 22357799999999999999997 999999999973
No 9
>PRK01265 heat shock protein HtpX; Provisional
Probab=99.96 E-value=1.2e-27 Score=220.87 Aligned_cols=164 Identities=22% Similarity=0.284 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHHHcCCccccCCCC--hHHHHHHHHHHHHHhCCCCCcEEEEeCCCCceEEeeccCCCCEEEEcHHHHh
Q 024914 96 ALLGTVTEQIMLLENIGTSVLVSKNQ--LPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVE 173 (260)
Q Consensus 96 ~~~~~~~~~~~~~~~~g~~v~v~~~~--~p~L~~~v~~l~~~l~i~~p~vyv~~~~~~NAfa~G~~~~~~~Ivi~~~Ll~ 173 (260)
.++.++....+....++ +.+++|.+ +|+|++.++++|++.|++.|++|+++++.+|||++|.+.+++.|+++++|++
T Consensus 55 ~~~~~~~sp~li~~~~~-a~~~~p~~~~~~~L~~~v~~la~~~g~~~p~vyv~~~~~~NAfa~G~~~~~~~Ivvt~gLl~ 133 (324)
T PRK01265 55 NIIQWLFGPYMINAAYR-TVEVTPTDPVYGWLYSIVAEVAKYNGIRVPKVYIADVPFPNAFAYGSPIAGKRIAITLPLLK 133 (324)
T ss_pred HHHHHHHhHHHHHHHcC-CeeCCCCCcccHHHHHHHHHHHHHcCCCCCeEEEecCCCCCeEEeccCCCCCEEEEehHHHh
Confidence 45666677777776665 33566655 8999999999999999999999999999999999997655679999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH-------h--c-h---------h----HHHHHH---HH-HHHH
Q 024914 174 LLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAY-------T--I-P---------G----IGGMIA---QS-LEEQ 226 (260)
Q Consensus 174 ~L~~~EL~aVLaHElgHi~~~H~~~~~~~~~l~~~~~-------~--~-p---------~----lg~~~~---~~-l~~~ 226 (260)
.+++||++||+|||+||++++|...+++...+..+.. + + . + +..++. .. ....
T Consensus 134 ~l~~~El~aVlAHElgHik~~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~ll~~~~~~i~~~l 213 (324)
T PRK01265 134 ILNRDEIKAVAGHELGHLKHRDVELLMAIGLIPTLIYYLGYSLFWGGMFGGGGGGRGNNGGLLFLIGIALMAVSFVFNLL 213 (324)
T ss_pred hCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998875543221110 0 0 0 0 000111 11 1223
Q ss_pred HHHHHHHHHHHHHHHHHH-hcCChHHHHHHHHhcC
Q 024914 227 LFRWLRAAELTCDRAALL-VSQDPKLGAVHLWLIN 260 (260)
Q Consensus 227 l~~~sR~~E~~ADr~a~~-~~gdp~a~~sAL~kI~ 260 (260)
.+.+||.+||.||++|++ .+++|+++++||.||.
T Consensus 214 ~~aiSR~rEy~AD~~aa~~~tg~p~~LasAL~KL~ 248 (324)
T PRK01265 214 VLSINRMREAYADVNSALTVPGGAENLQTALAKIT 248 (324)
T ss_pred HHHHHHHHHHHHhHHHHHhhcCChHHHHHHHHHHH
Confidence 467799999999999998 5699999999999973
No 10
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.3e-24 Score=193.88 Aligned_cols=168 Identities=28% Similarity=0.358 Sum_probs=123.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHcCCccccCCCC--hH----HHHHHHHHHHHHhCCC-CCcEEEEeCCCCceEEeeccCCC
Q 024914 90 LNDLGRALLGTVTEQIMLLENIGTSVLVSKNQ--LP----ELHQLMTEAAEILNLE-APDLYVRQSPVPNAYTLAISGKK 162 (260)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~~~~g~~v~v~~~~--~p----~L~~~v~~l~~~l~i~-~p~vyv~~~~~~NAfa~G~~~~~ 162 (260)
+..+...+++++..+.+.....+.. .+.+.. .+ .+...+.+++...+++ .|++|+++++.+|||++|.++++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~~~v~i~~~~~~NAFa~g~~~~~ 139 (302)
T COG0501 61 LLAFAALLISLLFSKALVLKSLGAL-TLSEPILLAPRLYAVLLLKVAELARQAGIPHMPEVYILETPQPNAFALGGGPKN 139 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcee-ecccccccchHHHHHHHHHHHHHHHHCCCCCCCeeEEecCCCccceecCCCCCC
Confidence 3344556677788888877777652 222221 33 3445899999999999 89999999999999999965567
Q ss_pred CEEEEcHHHHhcCCHHHHHHHHHHHHHHHHccChHHHH-HHHHHHHHH----Hhchh---------HHHH----HH-HHH
Q 024914 163 PFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLT-FANILTLGA----YTIPG---------IGGM----IA-QSL 223 (260)
Q Consensus 163 ~~Ivi~~~Ll~~L~~~EL~aVLaHElgHi~~~H~~~~~-~~~~l~~~~----~~~p~---------lg~~----~~-~~l 223 (260)
+.|++++||++.+|+||++||||||+||++++|...+. +...+.... ..... .... +. ...
T Consensus 140 ~~V~vt~gLl~~l~~dEl~aVlaHElgHi~~rd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (302)
T COG0501 140 GRVVVTTGLLDLLNDDELEAVLAHELGHIKNRHTLVRLTLRGLLASAFVLLATLALAAGLLGEAALALLLLLLLLALFLA 219 (302)
T ss_pred eeEEecHHHHhhCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999843 222211110 00000 0001 11 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHhc
Q 024914 224 EEQLFRWLRAAELTCDRAALLVSQDPKLGAVHLWLI 259 (260)
Q Consensus 224 ~~~l~~~sR~~E~~ADr~a~~~~gdp~a~~sAL~kI 259 (260)
....+.|||.+|++||+.|+++++ |+.+++||.||
T Consensus 220 ~~~~~~~SR~~E~~AD~~a~~l~~-~~~l~~aL~kl 254 (302)
T COG0501 220 TLLVLAFSRKREYEADRFAAKLTG-PEKLASALQKL 254 (302)
T ss_pred HHHHHHHHHHhHHhhhhchhhccC-hHHHHHHHHHH
Confidence 245689999999999999999999 99999999987
No 11
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification. ; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.
Probab=99.89 E-value=9.1e-24 Score=183.58 Aligned_cols=141 Identities=32% Similarity=0.409 Sum_probs=90.0
Q ss_pred CCCChHHHHHHHHHHHHHh--CCCCCcEEEEeCCCCceEEeeccCCCCEEEEcHHHHhcCCHHHHHHHHHHHHHHHHccC
Q 024914 118 SKNQLPELHQLMTEAAEIL--NLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDH 195 (260)
Q Consensus 118 ~~~~~p~L~~~v~~l~~~l--~i~~p~vyv~~~~~~NAfa~G~~~~~~~Ivi~~~Ll~~L~~~EL~aVLaHElgHi~~~H 195 (260)
.|.+.|+|++.++++|+++ +.+.|++|+++++.+|||++|.+. ++.|+|+++|++.++++|+++|||||+||++++|
T Consensus 26 ~~~~~~~L~~~v~~l~~~~~~~~~~~~v~v~~~~~~NA~~~g~~~-~~~I~v~~~ll~~~~~~el~aVlaHElgH~~~~h 104 (226)
T PF01435_consen 26 TPLEDPELRRIVEELARRAGLGIPPPRVYVIDSPSPNAFATGGGP-RKRIVVTSGLLESLSEDELAAVLAHELGHIKHRH 104 (226)
T ss_dssp -B-HHHHHHHHHHHHHHHHHCTSS--EEEEE--SSEEEEEETTTC---EEEEEHHHHHHSSHHHHHHHHHHHHHHHHTTH
T ss_pred cchHHHHHHHHHHHHHHHhcCCCCCCeEEEEcCCCCcEEEEccCC-CcEEEEeChhhhcccHHHHHHHHHHHHHHHHcCC
Confidence 4788999999999999999 777889999999999999999644 6799999999999999999999999999999999
Q ss_pred hHHHHHHHHHHH----HHHh-c---hhHH---HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 024914 196 GVWLTFANILTL----GAYT-I---PGIG---GM-------IAQSLEEQLFRWLRAAELTCDRAALLVSQDPKLGAVHLW 257 (260)
Q Consensus 196 ~~~~~~~~~l~~----~~~~-~---p~lg---~~-------~~~~l~~~l~~~sR~~E~~ADr~a~~~~gdp~a~~sAL~ 257 (260)
..+.+....+.. .... + .... .. +..........|+|.+|++||++|++++++++.+++++.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~E~~AD~~a~~~~~~~~~l~~a~~ 184 (226)
T PF01435_consen 105 ILKSLLISLLLSILFFALLALLIGSMSLFSAFGFIDILGILIAFLFQLLTNAFSRRQEYEADRYAARLGGDPALLARALY 184 (226)
T ss_dssp CCCCCCHHH-HHHHHHHHHT-----HHHHHHHH----------HHSTT------HHHHHHHHHHHHHH------HHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccchhhHHHHHHHhhcchhHHHHHHHHHHHHHhcCCcHHHHHhCC
Confidence 876533222111 1100 0 0000 00 001112345789999999999999999998887766665
Q ss_pred hc
Q 024914 258 LI 259 (260)
Q Consensus 258 kI 259 (260)
++
T Consensus 185 ~~ 186 (226)
T PF01435_consen 185 KP 186 (226)
T ss_dssp -T
T ss_pred CH
Confidence 43
No 12
>KOG2719 consensus Metalloprotease [General function prediction only]
Probab=99.75 E-value=3.7e-17 Score=154.18 Aligned_cols=143 Identities=24% Similarity=0.218 Sum_probs=108.5
Q ss_pred ccCCCChHHHHHHHHHHHHHhCCCCCcEEEEe----CCCCceEEeeccCCCCEEEEcHHHH--hc-CCHHHHHHHHHHHH
Q 024914 116 LVSKNQLPELHQLMTEAAEILNLEAPDLYVRQ----SPVPNAYTLAISGKKPFVVVHTSLV--EL-LTRKELQAVLAHEL 188 (260)
Q Consensus 116 ~v~~~~~p~L~~~v~~l~~~l~i~~p~vyv~~----~~~~NAfa~G~~~~~~~Ivi~~~Ll--~~-L~~~EL~aVLaHEl 188 (260)
+.+|.++.++++.++++++..|+|..++++++ +...|||.+|++ ...+|+|.+.|+ +. +++||+.||+|||+
T Consensus 210 K~~PLe~g~l~~~Ie~la~s~gfp~~k~~vi~~s~rs~hsNAyfyG~~-~~KRIvIyDtLl~~~~~~~~eel~AVl~HEL 288 (428)
T KOG2719|consen 210 KFTPLEEGDLKEKIERLADSVGFPLSKYRVIDGSKRSSHSNAYFYGLC-KNKRIVIYDTLLLEEEHLNNEELVAVLAHEL 288 (428)
T ss_pred CCCCCCCCchHHHHHHHHHhcCCCceEEEEEecCCCCCCCCeeeeecc-ccceEEEehhhhhhhhccccHHHHHHHHHHh
Confidence 34666777899999999999999998999987 357999999985 466999999998 33 58999999999999
Q ss_pred HHHHccChHHHHHHHHHHHH----H----H------------h-chhH-HHH-HH----HHH----HHHHHHHHHHHHHH
Q 024914 189 GHLKCDHGVWLTFANILTLG----A----Y------------T-IPGI-GGM-IA----QSL----EEQLFRWLRAAELT 237 (260)
Q Consensus 189 gHi~~~H~~~~~~~~~l~~~----~----~------------~-~p~l-g~~-~~----~~l----~~~l~~~sR~~E~~ 237 (260)
||++++|..++++...+..+ . + . .|.+ |.+ +. .+. ...+.-.+|..|+.
T Consensus 289 GHW~~~H~~K~~ii~~~~l~l~~llF~~~~~~~~ly~a~Gf~~~~P~~ig~livf~~~l~py~~l~~~~~n~~sR~fEyq 368 (428)
T KOG2719|consen 289 GHWKLNHVLKNIIIMQIHLFLEFLLFGFLYRNPKLYAAFGFIDEQPSLIGFLIVFQFVLAPYRALLNFLMNLISRRFEYQ 368 (428)
T ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHHHHcCcchheeecCCCCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999865332111 0 0 0 2332 222 11 111 12344558999999
Q ss_pred HHHHHHHhcCChHHHHHHHHhcC
Q 024914 238 CDRAALLVSQDPKLGAVHLWLIN 260 (260)
Q Consensus 238 ADr~a~~~~gdp~a~~sAL~kI~ 260 (260)
||++|.+. |-.+.+.+||.|++
T Consensus 369 AD~fA~kl-GYg~~L~~AL~KL~ 390 (428)
T KOG2719|consen 369 ADAFAKKL-GYGKDLRQALIKLF 390 (428)
T ss_pred HHHHHHHc-CCchhHHHHHHHHh
Confidence 99999999 45688999999985
No 13
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.73 E-value=1e-16 Score=152.48 Aligned_cols=166 Identities=22% Similarity=0.303 Sum_probs=112.4
Q ss_pred CCCchHHHHHHHHHHHHHHH----HHHHcCCccccCCCChHHHHHHHHHHHH----HhCCC-CC-cEEEEeCCCCceEEe
Q 024914 87 IPGLNDLGRALLGTVTEQIM----LLENIGTSVLVSKNQLPELHQLMTEAAE----ILNLE-AP-DLYVRQSPVPNAYTL 156 (260)
Q Consensus 87 lpgl~~~~~~~~~~~~~~~~----~~~~~g~~v~v~~~~~p~L~~~v~~l~~----~l~i~-~p-~vyv~~~~~~NAfa~ 156 (260)
+|++++...+.+++-.|..+ ..+..++ +....+|+|.+.++++.. ..|.+ .| ++++++++.+|||++
T Consensus 33 lp~ig~~~~s~ls~~qev~~g~~~~~Qlr~~---~~~i~D~el~~yv~~~g~rL~~~a~~~~~~f~f~lV~d~~iNAFA~ 109 (484)
T COG4783 33 LPDIGVSAGSTLSPAQEVALGDPANAQLRGS---VPLIRDPELEEYVNSLGQRLAAAADLVKTPFTFFLVNDDSINAFAT 109 (484)
T ss_pred cchhhhhhhhcCCHHHHHHhhHHHHHHhccC---CCCcCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCccchhhc
Confidence 46666666666665555333 3333333 334568888887776555 44555 34 788999999999998
Q ss_pred eccCCCCEEEEcHHHHhcC-CHHHHHHHHHHHHHHHHccChHHHHHH----------HHHHH-HHHhc-h--hHHHHHH-
Q 024914 157 AISGKKPFVVVHTSLVELL-TRKELQAVLAHELGHLKCDHGVWLTFA----------NILTL-GAYTI-P--GIGGMIA- 220 (260)
Q Consensus 157 G~~~~~~~Ivi~~~Ll~~L-~~~EL~aVLaHElgHi~~~H~~~~~~~----------~~l~~-~~~~~-p--~lg~~~~- 220 (260)
. | .+|+|++||+-.. |++||.+|||||+||+..+|..+.+=. .++.. ++... + +...+..
T Consensus 110 ~--G--g~v~vntGLll~ae~esElagViAHEigHv~qrH~aR~~e~~~r~~~~~i~~ml~gi~aa~a~~~ag~a~iag~ 185 (484)
T COG4783 110 P--G--GYVVVNTGLLLTAENESELAGVIAHEIGHVAQRHLARSMEQQQRAAPMAIAGMLLGILAALAGADAGMAGIAGA 185 (484)
T ss_pred C--C--ceEEEehHHHHhcCCHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhchhHHHHHHHHHHHHHhCccccHHHHHHH
Confidence 2 2 3899999999776 789999999999999999999876522 11111 11111 1 1111111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhc----CChHHHHHHHHhc
Q 024914 221 -QSLEEQLFRWLRAAELTCDRAALLVS----QDPKLGAVHLWLI 259 (260)
Q Consensus 221 -~~l~~~l~~~sR~~E~~ADr~a~~~~----gdp~a~~sAL~kI 259 (260)
.........|+|..|.+|||+|+... +||.++.+.+.|.
T Consensus 186 ~a~~~~g~L~~sR~~E~eADr~Gi~~L~raGydp~gM~~ff~rl 229 (484)
T COG4783 186 LAGAAQGQLNFSRQNEQEADRIGITTLVRAGYDPQGMPEFFERL 229 (484)
T ss_pred HHHhhhhhhhcchhhHHHHHHHHHHHHHHcCCCchhHHHHHHHH
Confidence 11112356899999999999999886 7999999999885
No 14
>PF05569 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR008756 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M56 (clan M-). The predicted active site residues for members of this family occur in the motif HEXXH. The type example is BlaR1 peptidase from Bacillus licheniformis. Production of beta-Lactamase and penicillin-binding protein 2a (which mediate staphylococcal resistance to beta-lactam antibiotics) is regulated by a signal-transducing integral membrane protein and a transcriptional repressor. The signal transducer is a fusion protein with penicillin-binding and zinc metalloprotease domains. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription.
Probab=99.65 E-value=8e-15 Score=133.98 Aligned_cols=131 Identities=29% Similarity=0.407 Sum_probs=103.1
Q ss_pred CCCChHHHHHHHHHHHHHhCCCCC-cEEEEeCCCCceEEeeccCCCCEEEEcHHHHhcCCHHHHHHHHHHHHHHHHccCh
Q 024914 118 SKNQLPELHQLMTEAAEILNLEAP-DLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHG 196 (260)
Q Consensus 118 ~~~~~p~L~~~v~~l~~~l~i~~p-~vyv~~~~~~NAfa~G~~~~~~~Ivi~~~Ll~~L~~~EL~aVLaHElgHi~~~H~ 196 (260)
.+.+++++.+.+++++++.|++.+ ++++ .+....++++|+ .+|.|+++.++.+.++++|++.|+.||++|++++|.
T Consensus 136 ~~~~~~~~~~~l~~~~~~~~~~~~~~i~~-s~~i~sP~~~G~--~~p~I~lP~~~~~~~~~~el~~il~HEl~Hikr~D~ 212 (299)
T PF05569_consen 136 RPVEDEELQALLEECKEELGIKRPIRIRV-SSGISSPFVFGF--LRPVIVLPESLLEDLSEEELRAILLHELAHIKRRDL 212 (299)
T ss_pred cccCcHHHHHHHHHHHHHhCCCCceEEEE-cCCCCCCeeecC--cceEEEecCccccccCHHHHHHHHHHHHHHHHCCCh
Confidence 344567889999999999998854 3333 334456789997 689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCChHHHHHHHHhc
Q 024914 197 VWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLV--SQDPKLGAVHLWLI 259 (260)
Q Consensus 197 ~~~~~~~~l~~~~~~~p~lg~~~~~~l~~~l~~~sR~~E~~ADr~a~~~--~gdp~a~~sAL~kI 259 (260)
.++.+..++..+ +|++++.+++ .....+.+|+.||+.++.. ..++..++.+|.++
T Consensus 213 ~~~~l~~l~~~l-~WfnP~~~~~-------~~~~~~~~E~~cD~~vl~~l~~~~~~~Y~~~Ll~~ 269 (299)
T PF05569_consen 213 LWKLLAELLCAL-HWFNPLVWLL-------RRRIRRDRELACDEAVLRNLGKEERKAYAETLLKV 269 (299)
T ss_pred HHHHHHHHHHHH-HHhhHHHHHH-------HHHHHHHHHHhhhHHHHHhcCchhHHHHHHHHHHH
Confidence 999998777654 5555544332 3455678999999999999 45677777777653
No 15
>COG4784 Putative Zn-dependent protease [General function prediction only]
Probab=99.52 E-value=1.3e-13 Score=126.60 Aligned_cols=135 Identities=25% Similarity=0.364 Sum_probs=96.7
Q ss_pred CCChHHHHHHHHHHHHHhCCC--CC----cEEEEeCCCCceEEeeccCCCCEEEEcHHHHhcC-CHHHHHHHHHHHHHHH
Q 024914 119 KNQLPELHQLMTEAAEILNLE--AP----DLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELL-TRKELQAVLAHELGHL 191 (260)
Q Consensus 119 ~~~~p~L~~~v~~l~~~l~i~--~p----~vyv~~~~~~NAfa~G~~~~~~~Ivi~~~Ll~~L-~~~EL~aVLaHElgHi 191 (260)
+..+|.+.+++.++..++-.- .| .+-|+++|.+|||+.+ | .+++|+.||+..+ |..|+++||+||+||+
T Consensus 60 eY~D~Kler~Vari~g~lt~~S~~p~q~YriTilnSP~INAFALP--G--GYlYitRGLlAland~sEvAAVl~HEmgHV 135 (479)
T COG4784 60 EYRDPKLERMVARIVGALTAVSENPQQTYRITILNSPNINAFALP--G--GYLYITRGLLALANDSSEVAAVLAHEMGHV 135 (479)
T ss_pred ccCCHHHHHHHHHHHhHhhhhccCCCceEEEEEecCCCccccccC--C--ceEEEehhHHHHcCCHHHHHHHHHhhhhhe
Confidence 456788888888887766432 23 6778999999999984 3 4999999999988 4679999999999999
Q ss_pred HccChHHHHHHHHHHHHH----Hhch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CChHHHHHHHH
Q 024914 192 KCDHGVWLTFANILTLGA----YTIP---GIGGMIAQSLEEQLFRWLRAAELTCDRAALLVS----QDPKLGAVHLW 257 (260)
Q Consensus 192 ~~~H~~~~~~~~~l~~~~----~~~p---~lg~~~~~~l~~~l~~~sR~~E~~ADr~a~~~~----gdp~a~~sAL~ 257 (260)
..+|.....-......++ .... ..|..+..--...+..|+|++|++||.+|++.. .||.+++.-|-
T Consensus 136 tAnHgi~rQ~~e~a~~ia~rvva~vl~~~~agk~A~~rGklrla~fsRnqELqAD~iG~~~lgeAGYDP~A~~rfl~ 212 (479)
T COG4784 136 TANHGIQRQQREAAEVIASRVVAEVLGSDAAGKQALIRGKLRLAQFSRNQELQADAIGIKMLGEAGYDPYAAARFLQ 212 (479)
T ss_pred ecchhHHHHHHHHHHHHHHHHHHHHhCCcchhhHHHhhhhHHHhhhccchhhhhhhhhHHHHHhcCCChHHHHHHHH
Confidence 999998776432221111 1111 111111111123467899999999999999987 58988887653
No 16
>KOG2661 consensus Peptidase family M48 [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.5e-12 Score=119.04 Aligned_cols=134 Identities=25% Similarity=0.296 Sum_probs=90.1
Q ss_pred cCCCChH---HHHHHHHHHHHHhC----CC--CCcEEEEeCCCCceEEeeccCCCCEEEEcHHHHhcC-CHHHHHHHHHH
Q 024914 117 VSKNQLP---ELHQLMTEAAEILN----LE--APDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELL-TRKELQAVLAH 186 (260)
Q Consensus 117 v~~~~~p---~L~~~v~~l~~~l~----i~--~p~vyv~~~~~~NAfa~G~~~~~~~Ivi~~~Ll~~L-~~~EL~aVLaH 186 (260)
.-|.+.| .+.+++.++.+..+ +. .-++.|+++|.+|||+.+ + +-|+|.+|+|..+ +++++++||||
T Consensus 206 mLp~~hp~sl~V~~vlk~iIea~~~~~slsgIkWeihVVndPipNAFvLP--g--GKvfVFtgiLn~ck~ddglAtvLgH 281 (424)
T KOG2661|consen 206 MLPEKHPRSLAVKEVLKHIIEANKDVPSLSGIKWEIHVVNDPIPNAFVLP--G--GKVFVFTGILNSCKDDDGLATVLGH 281 (424)
T ss_pred cCCcCCchhhHHHHHHHHHHHHhccCCcccCceeEEEEecCCCCceeecc--C--CeEEEEechhhcccChHHHHHHHHH
Confidence 3455566 35566666655554 33 238999999999999985 3 3599999999987 78999999999
Q ss_pred HHHHHHccChHHHHHH----HHHHHHHHhchhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhc----CChHHHHHH
Q 024914 187 ELGHLKCDHGVWLTFA----NILTLGAYTIPGIGGMIAQSLE--EQLFRWLRAAELTCDRAALLVS----QDPKLGAVH 255 (260)
Q Consensus 187 ElgHi~~~H~~~~~~~----~~l~~~~~~~p~lg~~~~~~l~--~~l~~~sR~~E~~ADr~a~~~~----gdp~a~~sA 255 (260)
|+||-..+|..-+... .++...++.+-+-+ .....+. ...+.+||++|.+||.+|+.++ .||.+...-
T Consensus 282 E~aHaVarH~AEki~k~~~~siLgLvlyt~~~a~-~~n~~Ll~~flrlPfSRKMEtEADyIGLlLma~Acfdpras~tv 359 (424)
T KOG2661|consen 282 EIAHAVARHAAEKIGKVHLLSILGLVLYTMIWAI-CPNDKLLEYFLRLPFSRKMETEADYIGLLLMAKACFDPRASSTV 359 (424)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhc-cchHHHHHHHhcCcchhhhhhhhhHHHHHHHHHhhcCcccchHH
Confidence 9999999999866532 22222222221100 0000111 1246889999999999999874 677766543
No 17
>COG4219 MecR1 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component [Transcription / Signal transduction mechanisms]
Probab=99.39 E-value=1.2e-11 Score=112.90 Aligned_cols=125 Identities=18% Similarity=0.222 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEEeCCCCceEEeeccCCCCEEEEcHHHHhcCCHHHHHHHHHHHHHHHHccChHHHHHHH
Q 024914 124 ELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFAN 203 (260)
Q Consensus 124 ~L~~~v~~l~~~l~i~~p~vyv~~~~~~NAfa~G~~~~~~~Ivi~~~Ll~~L~~~EL~aVLaHElgHi~~~H~~~~~~~~ 203 (260)
+..+.++++.+++..+.+.+.. .+..-+...+|. .+|.|++++.+.+.++++|++.|++||++|+++||...+.+..
T Consensus 137 d~~~~~~~~~~~~~~k~i~ir~-s~~i~~P~v~gl--~kp~IvlP~d~~~r~~~ee~~yIilHEl~Hlk~gD~i~n~i~~ 213 (337)
T COG4219 137 DKRKIVTILKNHQYKKHILIRK-SKAIDGPMVFGL--VKPCIVLPADFVERLTDEELKYIILHELSHLKRGDAIINLIVV 213 (337)
T ss_pred cHHHHHHHHHHhhhccCeeEee-cccCCCceeecc--CcceEEccHHHHhhcCHHhhhhhHhHHHhhhhcccHHHHHHHH
Confidence 5677888888887766643322 334456677786 5899999999999999999999999999999999999999887
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHhc
Q 024914 204 ILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVSQ--DPKLGAVHLWLI 259 (260)
Q Consensus 204 ~l~~~~~~~p~lg~~~~~~l~~~l~~~sR~~E~~ADr~a~~~~g--dp~a~~sAL~kI 259 (260)
.+..+ .|++++-.+. ..+..-++|..||+.++.... ....++.++.++
T Consensus 214 ~~~~l-~WfNP~v~l~-------~~~~~~D~E~aCDa~vL~~~~~~err~YaEsil~~ 263 (337)
T COG4219 214 VLGVL-FWFNPLVHLG-------KRKIRIDQEIACDAAVLARINPEERRTYAESILKL 263 (337)
T ss_pred HHhHH-hhcChHHHHH-------HHHHHhhHHHHhhHHHHhccChHHHHHHHHHHHHH
Confidence 77655 4554433222 234445799999999998862 334566666553
No 18
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=97.86 E-value=0.00016 Score=55.82 Aligned_cols=35 Identities=31% Similarity=0.545 Sum_probs=28.4
Q ss_pred CCEEEEcHHHHhcCCHHHHHHHHHHHHHHHHccChHHHH
Q 024914 162 KPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLT 200 (260)
Q Consensus 162 ~~~Ivi~~~Ll~~L~~~EL~aVLaHElgHi~~~H~~~~~ 200 (260)
.++|+|++. +++.+..++++||+||+..+|.....
T Consensus 28 ~~~I~in~~----~~~~~~~f~laHELgH~~~~~~~~~~ 62 (122)
T PF06114_consen 28 NPIIFINSN----LSPERQRFTLAHELGHILLHHGDETF 62 (122)
T ss_dssp TTEEEEESS----S-HHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred CCEEEECCC----CCHHHHHHHHHHHHHHHHhhhccccc
Confidence 789999987 68899999999999999987766543
No 19
>PF04228 Zn_peptidase: Putative neutral zinc metallopeptidase; InterPro: IPR007343 Members of this family of bacterial proteins are described as hypothetical proteins or zinc metallopeptidases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=97.22 E-value=0.0024 Score=58.83 Aligned_cols=106 Identities=17% Similarity=0.098 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhCCC--CCcEEEEeCC----------CCceEEeeccCCCCEEEEcHHHHhcCC-------HHHHHHHHH
Q 024914 125 LHQLMTEAAEILNLE--APDLYVRQSP----------VPNAYTLAISGKKPFVVVHTSLVELLT-------RKELQAVLA 185 (260)
Q Consensus 125 L~~~v~~l~~~l~i~--~p~vyv~~~~----------~~NAfa~G~~~~~~~Ivi~~~Ll~~L~-------~~EL~aVLa 185 (260)
+.+.+.+.-++.|.+ .|++.+.++. ..|||= ++.+..|++....++.|. +--..+|||
T Consensus 99 le~~W~~~~~~~g~~y~~P~lv~~~~~~~t~CG~a~s~~gpFY---Cp~D~tIYlD~~f~~~L~~~~ga~G~~a~ayVlA 175 (292)
T PF04228_consen 99 LEDVWTPQFPQAGLPYRPPKLVLFSGSVQTGCGTASSATGPFY---CPADQTIYLDLSFFDELQQRFGASGDFAQAYVLA 175 (292)
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEeCCCCCCCCCCCcCCCCCEe---CCCCCEEEechHHHHHHHHHhCCccHHHHHHHHH
Confidence 445556666667776 6777776432 123332 234558999988765442 334678999
Q ss_pred HHHHHHHccChHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024914 186 HELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVS 246 (260)
Q Consensus 186 HElgHi~~~H~~~~~~~~~l~~~~~~~p~lg~~~~~~l~~~l~~~sR~~E~~ADr~a~~~~ 246 (260)
||.||..++.. .++-. ........+. ..-...+|..|+.||-+|=..+
T Consensus 176 HEyGHHVQ~l~--Gil~~-~~~~~~~~~~----------~~~~~~svr~ELQADC~AGvw~ 223 (292)
T PF04228_consen 176 HEYGHHVQNLL--GILDA-VRQAQQGRSP----------AEANELSVRLELQADCFAGVWA 223 (292)
T ss_pred HHHHHHHHHHh--hhHHH-HHHHhhccCc----------cccchHHHHHHHHHHHHHHHHh
Confidence 99999875322 11110 0000000000 0123567899999999987665
No 20
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=97.08 E-value=0.0014 Score=56.39 Aligned_cols=69 Identities=22% Similarity=0.291 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEEeCCCCceEEeeccCCCCEEEEcHHHHhcCCHHHHHHHHHHHHHHHHccChH
Q 024914 124 ELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGV 197 (260)
Q Consensus 124 ~L~~~v~~l~~~l~i~~p~vyv~~~~~~NAfa~G~~~~~~~Ivi~~~Ll~~L~~~EL~aVLaHElgHi~~~H~~ 197 (260)
.+.+.+...++.+|++.|++.|.+...- +|-+..+..|.++..|+ .++++-+.+|+.||++|+.+.+.-
T Consensus 113 ~l~~~~~~~~~~~~~~~~~i~ir~~ksr----WGsc~~~~~I~ln~~L~-~~P~~~idYVvvHEL~Hl~~~nHs 181 (205)
T PF01863_consen 113 YLPERLKKYAKKLGLPPPKIKIRDMKSR----WGSCSSKGNITLNWRLV-MAPPEVIDYVVVHELCHLRHPNHS 181 (205)
T ss_pred HHHHHHHHHHHHcCCCcceEEEeehhhc----cccCCCCCcEEeecccc-cCCccHHHHHHHHHHHHhccCCCC
Confidence 4566677788899999888988775542 34333567899999988 589999999999999999865443
No 21
>PRK04351 hypothetical protein; Provisional
Probab=96.54 E-value=0.014 Score=48.66 Aligned_cols=67 Identities=22% Similarity=0.308 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHH-hCCCCC-cEEEEeCC--CCceEEeeccCCCCEEEEcHHHHhcCCHHHHHHHHHHHHHHHH
Q 024914 122 LPELHQLMTEAAEI-LNLEAP-DLYVRQSP--VPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLK 192 (260)
Q Consensus 122 ~p~L~~~v~~l~~~-l~i~~p-~vyv~~~~--~~NAfa~G~~~~~~~Ivi~~~Ll~~L~~~EL~aVLaHElgHi~ 192 (260)
..+|.+++++++.. ++.+-| ++..-.-- ..-++-. ....|.+++.+++..+++++..||+||++|+.
T Consensus 3 ~~~l~~l~~~~s~~~F~~~f~~~v~~n~RlrttgG~~~l----~~~~I~lnp~ll~~~~~~~l~~vv~HElcH~~ 73 (149)
T PRK04351 3 NQELQRLVEEISLEYFGKPFRHQAYFNKRLRTTGGRYLL----KDHHIEFNPKMLEEYGLEELIGIIKHELCHYH 73 (149)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEeccchhhhheeec----CCCeEEeCHHHHhhccHHHHHhhHHHHHHHHH
Confidence 35788889998875 566644 33332211 1122211 34689999999998999999999999999984
No 22
>COG1451 Predicted metal-dependent hydrolase [General function prediction only]
Probab=96.11 E-value=0.028 Score=49.81 Aligned_cols=71 Identities=20% Similarity=0.150 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhCCCCCcEEEEeCCCCceEEeeccCCCCEEEEcHHHHhcCCHHHHHHHHHHHHHHHHccChHHHH
Q 024914 125 LHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLT 200 (260)
Q Consensus 125 L~~~v~~l~~~l~i~~p~vyv~~~~~~NAfa~G~~~~~~~Ivi~~~Ll~~L~~~EL~aVLaHElgHi~~~H~~~~~ 200 (260)
+...++..++.+|.+...+.+.+...--+-++ ....|.++..+. .++++.+.+|++||++|++..+.-..+
T Consensus 125 l~~~~~~~~~~l~~~~~~~~ik~~k~~WGScs----~~~~i~~~~~l~-~~p~~~i~YVvvHELaHLke~nHs~~F 195 (223)
T COG1451 125 LEIRLKEYAKKLGVPPRAIKLKNMKRRWGSCS----KAGEIRFNWRLV-MAPEEVIDYVVVHELAHLKEKNHSKRF 195 (223)
T ss_pred HHHHHHHHHHHhCCCccceeeeeccceeeeec----CCCcEEeehhhh-cCCHHHHHHHHHHHHHHHhhhhccHHH
Confidence 33455556667777766666664332222222 223688888866 689999999999999999987654443
No 23
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=96.09 E-value=0.016 Score=47.81 Aligned_cols=32 Identities=25% Similarity=0.293 Sum_probs=29.9
Q ss_pred CCEEEEcHHHHhcCCHHHHHHHHHHHHHHHHc
Q 024914 162 KPFVVVHTSLVELLTRKELQAVLAHELGHLKC 193 (260)
Q Consensus 162 ~~~Ivi~~~Ll~~L~~~EL~aVLaHElgHi~~ 193 (260)
...|.++..+++..+++++..||.||++|...
T Consensus 41 ~~~I~ln~~l~~~~~~~~l~~~l~HEm~H~~~ 72 (146)
T smart00731 41 SAEIRLNPKLLTENGRDRLRETLLHELCHAAL 72 (146)
T ss_pred CCEEEeCHHHHhhccHHHHHhhHHHHHHHHHH
Confidence 56899999999888999999999999999997
No 24
>PF13203 DUF2201_N: Putative metallopeptidase domain
Probab=95.92 E-value=0.031 Score=50.91 Aligned_cols=38 Identities=21% Similarity=0.156 Sum_probs=35.0
Q ss_pred CEEEEcHHHHhcCCHHHHHHHHHHHHHHHHccChHHHH
Q 024914 163 PFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLT 200 (260)
Q Consensus 163 ~~Ivi~~~Ll~~L~~~EL~aVLaHElgHi~~~H~~~~~ 200 (260)
..|.++...+..++.+|+.+|++||+-|+..+|+.+.-
T Consensus 43 ~~l~~nP~~~~~l~~~~~~~~l~HevlH~~~~H~~r~~ 80 (292)
T PF13203_consen 43 RRLYYNPEFLESLSPEERVGLLLHEVLHCLLRHPWRRG 80 (292)
T ss_pred cEEEECcHHHhcCCHHHHHHHHHHHHHHHHccchhhhc
Confidence 38999999999999999999999999999999987654
No 25
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=95.58 E-value=0.081 Score=43.52 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=28.5
Q ss_pred EEEEcHHHHhcCCHHHHHHHHHHHHHHHHc
Q 024914 164 FVVVHTSLVELLTRKELQAVLAHELGHLKC 193 (260)
Q Consensus 164 ~Ivi~~~Ll~~L~~~EL~aVLaHElgHi~~ 193 (260)
.|.++..+++..+++++..+|.|||+|...
T Consensus 44 ~I~ls~~~~~~~~~~~~~~tL~HEm~H~~~ 73 (157)
T PF10263_consen 44 EIRLSPKLLDRNPEEELIDTLLHEMAHAAA 73 (157)
T ss_pred EEEECHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 899999999988899999999999999986
No 26
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=95.10 E-value=0.14 Score=44.94 Aligned_cols=51 Identities=22% Similarity=0.191 Sum_probs=42.2
Q ss_pred EEeCCCCceEEeeccCCCCEEEEcHHHHhcCC-----HHHHHHHHHHHHHHHHccCh
Q 024914 145 VRQSPVPNAYTLAISGKKPFVVVHTSLVELLT-----RKELQAVLAHELGHLKCDHG 196 (260)
Q Consensus 145 v~~~~~~NAfa~G~~~~~~~Ivi~~~Ll~~L~-----~~EL~aVLaHElgHi~~~H~ 196 (260)
++++...-|++.| ......|.++...++... .+|+.+||-||+.|+-+.++
T Consensus 57 ~~~~~~gVA~t~g-d~~~~~I~~S~~~i~~~~~~~~~~~Ei~Gvl~HE~~H~~Q~~~ 112 (205)
T PF04450_consen 57 ILDDMDGVAYTSG-DDDHKEIHFSARYIAKYPADGDVRDEIIGVLYHEMVHCWQWDG 112 (205)
T ss_pred EEECCCeeEEEec-CCCccEEEEeHHHHhhcccccchHHHHHHHHHHHHHHHhhcCC
Confidence 4566677789998 456679999999999875 35999999999999998765
No 27
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=94.85 E-value=0.072 Score=39.62 Aligned_cols=58 Identities=21% Similarity=0.237 Sum_probs=38.7
Q ss_pred HHHHHhCCCCCcEEEEeC---------CCCceEEeeccCCCCEEEEcHHHHhcCCHHHHHHHHHHHHHHHHcc
Q 024914 131 EAAEILNLEAPDLYVRQS---------PVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCD 194 (260)
Q Consensus 131 ~l~~~l~i~~p~vyv~~~---------~~~NAfa~G~~~~~~~Ivi~~~Ll~~L~~~EL~aVLaHElgHi~~~ 194 (260)
++-..+|.+...|.|..+ ....||+.| + .|++..+-.+ .+..+=..+|+||++|+.+.
T Consensus 9 ~~e~~~G~dl~~Vrvh~~~~a~~~~~~~~A~A~T~G---~--~I~f~~g~~~-~~s~~~~~llaHEl~Hv~Qq 75 (79)
T PF13699_consen 9 RLERAFGADLSDVRVHTGPAASRAAAALGARAFTVG---N--DIYFAPGKYN-PDSPEGRALLAHELAHVVQQ 75 (79)
T ss_pred HHHHHhCCCccceEEEeCCchhhhhhccCCeEEEEC---C--EEEEcCCCcC-CCCCCcchhHhHHHHHHHhh
Confidence 344467777666777554 245678876 2 6998777432 33445567999999999864
No 28
>PF10463 Peptidase_U49: Peptidase U49; InterPro: IPR019504 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This entry contains peptidases belonging to MEROPS peptidase family U49 (Lit peptidase, clan U-). The Lit peptidase from Escherichia coli functions in bacterial cell death in response to infection by Enterobacteria phage T4. Following binding of Gol peptide to domains II and III of elongation factor Tu, the Lit peptidase cleaves domain I of the elongation factor. This prevents binding of guanine nucleotides, shuts down translation and leads to cell death.
Probab=94.71 E-value=0.028 Score=49.30 Aligned_cols=42 Identities=24% Similarity=0.139 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024914 178 KELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVS 246 (260)
Q Consensus 178 ~EL~aVLaHElgHi~~~H~~~~~~~~~l~~~~~~~p~lg~~~~~~l~~~l~~~sR~~E~~ADr~a~~~~ 246 (260)
--+.+++.||++|+..+|.... -| .++.+.|.+||..|....
T Consensus 99 ~A~~fil~HE~~Hv~~~h~~~~------------~~---------------~~~~~eE~~AD~~A~~~i 140 (206)
T PF10463_consen 99 CAIAFILLHELAHVVLGHEGDS------------SP---------------SQSIQEEKEADSYATEMI 140 (206)
T ss_pred HHHHHHHHHHHHHHHHcCcccc------------cc---------------chhHHHHHhhhHHHHHHH
Confidence 4688999999999999998765 11 234688999999988875
No 29
>COG2856 Predicted Zn peptidase [Amino acid transport and metabolism]
Probab=94.40 E-value=0.037 Score=48.81 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=26.7
Q ss_pred cCCCCEEEEcHHHHhcCCHHHHHHHHHHHHHHHHcc
Q 024914 159 SGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCD 194 (260)
Q Consensus 159 ~~~~~~Ivi~~~Ll~~L~~~EL~aVLaHElgHi~~~ 194 (260)
...+|.|++++. .+++.-++++|||+||+..+
T Consensus 55 ~~~~~~I~iN~n----~~~~r~rFtlAHELGH~llH 86 (213)
T COG2856 55 DEEKPVIYINAN----NSLERKRFTLAHELGHALLH 86 (213)
T ss_pred eccCceEEEeCC----CCHHHHHHHHHHHHhHHHhc
Confidence 345689999986 38889999999999999864
No 30
>PRK04860 hypothetical protein; Provisional
Probab=94.13 E-value=0.19 Score=42.34 Aligned_cols=66 Identities=20% Similarity=0.211 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhCCC--CCcEEEEeCCCCceEEeeccCCCCEEEEcHHHHhcCCHHHHHHHHHHHHHHHHc
Q 024914 125 LHQLMTEAAEILNLE--APDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKC 193 (260)
Q Consensus 125 L~~~v~~l~~~l~i~--~p~vyv~~~~~~NAfa~G~~~~~~~Ivi~~~Ll~~L~~~EL~aVLaHElgHi~~ 193 (260)
+.+-++..-+.++-+ .|++..-..... |-...+ ...-|-++..+++.-+++++..||.||++|+..
T Consensus 9 ~~~~~~~a~~~f~~~f~~p~~~f~~R~rt-aG~~~l--~~~~I~~Np~ll~~~~~~~l~~~v~HEl~H~~~ 76 (160)
T PRK04860 9 LRECLAQANLYFKRTFPEPKVSYTQRGTS-AGTAWL--QSNEIRLNPVLLLENQQAFIDEVVPHELAHLLV 76 (160)
T ss_pred HHHHHHHHHHHhCCCCCCCEEEEeecchh-hcchhH--hcCCeeeCHHHHhhCcHHHHHhHHHHHHHHHHH
Confidence 444445555556655 456655432221 222222 345699999999888999999999999999874
No 31
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=93.78 E-value=0.29 Score=42.27 Aligned_cols=70 Identities=16% Similarity=0.183 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEEeCCCCceE------EeeccCCCCEEEEcHHHHhcCCHHHHHHHHHHHHHHHHcc
Q 024914 124 ELHQLMTEAAEILNLEAPDLYVRQSPVPNAY------TLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCD 194 (260)
Q Consensus 124 ~L~~~v~~l~~~l~i~~p~vyv~~~~~~NAf------a~G~~~~~~~Ivi~~~Ll~~L~~~EL~aVLaHElgHi~~~ 194 (260)
.+.+.+.++.+.+..+.-+|++.....-|.+ ..|..+....|.+.- +-...+.+++.+++|||+-|..+.
T Consensus 4 ~i~~~~~~~~~~~~~~~i~v~i~p~~~~~~~~~~~~g~~g~~~~~~~i~l~~-~~~~~~~~~l~~~iaHE~hH~~r~ 79 (195)
T PF10026_consen 4 IIEEALEKSIELLPGPDIPVFIFPADPENPFLIPELGGKGGGAIPGYIFLFL-LPNDYSLEELPALIAHEYHHNCRY 79 (195)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEeccCCCcccccccCcccccCCCCEEEEEe-cCCcccHHHHHHHHHHHHHHHHHH
Confidence 3556667777777666434665432211211 111122344677765 445568899999999999999753
No 32
>PF14247 DUF4344: Domain of unknown function (DUF4344)
Probab=91.74 E-value=1.1 Score=39.82 Aligned_cols=54 Identities=22% Similarity=0.311 Sum_probs=36.3
Q ss_pred HhCCCCCcEEEE--eCCCCceEEeeccCCCCEEEEcHHHHhcC---------CH--------HHHHHHHHHHHHHHH
Q 024914 135 ILNLEAPDLYVR--QSPVPNAYTLAISGKKPFVVVHTSLVELL---------TR--------KELQAVLAHELGHLK 192 (260)
Q Consensus 135 ~l~i~~p~vyv~--~~~~~NAfa~G~~~~~~~Ivi~~~Ll~~L---------~~--------~EL~aVLaHElgHi~ 192 (260)
.+.+|.| +.|. +....|||- .+..+.|.+.-.+++.. ++ +-+.+++-||+||..
T Consensus 32 ~f~LP~~-l~i~~~~CGe~nA~y---dPe~~~I~iCYEf~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~HE~GHAl 104 (220)
T PF14247_consen 32 YFPLPRD-LTIRFAECGEDNAFY---DPENRSITICYEFVDEILDRFAKANDPDEEYGQAAIGNVLFTLYHELGHAL 104 (220)
T ss_pred cCCCCCC-eEEEEeecCCCCCcc---CCCCCEEEECHHHHHHHHHHHHhCCcCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 4445544 4443 467899984 44677899988877521 11 347789999999976
No 33
>PRK09672 phage exclusion protein Lit; Provisional
Probab=91.57 E-value=0.25 Score=45.59 Aligned_cols=42 Identities=21% Similarity=0.106 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024914 178 KELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVS 246 (260)
Q Consensus 178 ~EL~aVLaHElgHi~~~H~~~~~~~~~l~~~~~~~p~lg~~~~~~l~~~l~~~sR~~E~~ADr~a~~~~ 246 (260)
..+.+|+.||++|+..+|... .. ..|+++.|.+||.+|....
T Consensus 163 ~A~a~i~~HEiaHv~~~h~~~------------~~---------------~e~s~~eE~eaDs~At~~i 204 (305)
T PRK09672 163 CALAWILLHEIAHVEFQHSSL------------ES---------------NEDSIQEEKEADSYATNWL 204 (305)
T ss_pred HHHHHHHHHHHHHHHhccccc------------cC---------------chHHHHHHHHHHHHHHHHH
Confidence 568999999999999999876 01 1455789999999998876
No 34
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=90.79 E-value=0.74 Score=38.47 Aligned_cols=65 Identities=25% Similarity=0.290 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHhCCC--CCcEEEEeC--CCCceEEeeccCCCCEEEEcHHHHhcCCHHHHHHHHHHHHHHHH
Q 024914 123 PELHQLMTEAAEILNLE--APDLYVRQS--PVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLK 192 (260)
Q Consensus 123 p~L~~~v~~l~~~l~i~--~p~vyv~~~--~~~NAfa~G~~~~~~~Ivi~~~Ll~~L~~~EL~aVLaHElgHi~ 192 (260)
.+|.+.++++.....-+ .|+++.-.- ..-.||- .+.-|-++.-+++...++.+..|+.||++|+.
T Consensus 5 ~~L~~~~~~as~~~~r~~~~p~~~~n~Rg~taG~ayL-----~~~~I~lNP~ll~en~~~f~~~vV~HELaHl~ 73 (156)
T COG3091 5 RKLQQCVEQASLKFFRKFFRPKASYNQRGRTAGGAYL-----LKSEIRLNPKLLEENGEDFIEQVVPHELAHLH 73 (156)
T ss_pred HHHHHHHHHHHHHhcCCCCCcceehhhhhhhcchhhc-----cccccccCHHHHHHccHHHHHHHHHHHHHHHH
Confidence 35777788777766543 566655331 1122232 23379999999999999999999999999987
No 35
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=89.39 E-value=15 Score=32.66 Aligned_cols=67 Identities=15% Similarity=0.141 Sum_probs=41.6
Q ss_pred HHHHHHHHHhCCCCCcEEEEeCCCCceEEeeccCCCCEEEEcHHHHhcCCHHHHHHHHHHHHHHHHccChHH
Q 024914 127 QLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVW 198 (260)
Q Consensus 127 ~~v~~l~~~l~i~~p~vyv~~~~~~NAfa~G~~~~~~~Ivi~~~Ll~~L~~~EL~aVLaHElgHi~~~H~~~ 198 (260)
+.-+.+.++.|+..-+|.-.+..-.+-| ++.++.|.++++-.+.-+- --.+|-|||+||-.++..-|
T Consensus 41 e~Ar~iL~~~gl~~V~Ve~~~G~LtDHY----dP~~k~vrLS~~vy~~~Si-aAvaVAAHEvGHAiQ~a~~Y 107 (222)
T PF04298_consen 41 EVARHILDRNGLSDVRVERVPGELTDHY----DPRNKVVRLSEDVYNGRSI-AAVAVAAHEVGHAIQHAEGY 107 (222)
T ss_pred HHHHHHHHHCCCCCeeEEEeCCCCCCCc----CCCCCEEEeCCccCCCCCH-HHHHHHHHHHhHHHhccccC
Confidence 3445555567776544555543212222 3456789999986654333 34579999999999877543
No 36
>COG4900 Predicted metallopeptidase [General function prediction only]
Probab=89.28 E-value=1.3 Score=35.21 Aligned_cols=71 Identities=23% Similarity=0.250 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHHhCCC---CCcEEEEeCCC--CceEE------------eeccCCCCEEEEcHHHHhcCCHHHHHHHH
Q 024914 122 LPELHQLMTEAAEILNLE---APDLYVRQSPV--PNAYT------------LAISGKKPFVVVHTSLVELLTRKELQAVL 184 (260)
Q Consensus 122 ~p~L~~~v~~l~~~l~i~---~p~vyv~~~~~--~NAfa------------~G~~~~~~~Ivi~~~Ll~~L~~~EL~aVL 184 (260)
.|+..+.++.+.-++|++ ..+++++-++. ..|++ .|+++ -..|-+-+.=.+.|+-+|---|+
T Consensus 6 ~~dve~~~~~~V~~lgLdyi~~~rv~vVys~gS~~~A~ARIwg~pki~~e~lglnP-~YviEl~sekF~rLs~~ekvKvi 84 (133)
T COG4900 6 LADVEADIKNAVVRLGLDYIFQVRVVVVYSPGSHSKAVARIWGIPKIFQEVLGLNP-VYVIELLSEKFKRLSCAEKVKVI 84 (133)
T ss_pred cccHHHHHHHHHHHhCcceeeeeeEEEEECCCCcceehhhhhcccHHHHHHhCCCC-eeeeeeehhhcCCCChHHHHHHH
Confidence 345667778888888887 35777776553 22332 23322 12455555557788889988999
Q ss_pred HHHHHHHHc
Q 024914 185 AHELGHLKC 193 (260)
Q Consensus 185 aHElgHi~~ 193 (260)
.||+.||-.
T Consensus 85 iHEllHIP~ 93 (133)
T COG4900 85 IHELLHIPA 93 (133)
T ss_pred HHHHhcCcc
Confidence 999999963
No 37
>TIGR00181 pepF oligoendopeptidase F. This family represents the oligoendopeptidase F clade of the family of larger M3 or thimet (for thiol-dependent metallopeptidase) oligopeptidase family. Lactococcus lactis PepF hydrolyzed peptides of 7 and 17 amino acids with fairly broad specificity. The homolog of lactococcal PepF in group B Streptococcus was named PepB (PubMed:8757883), with the name difference reflecting a difference in species of origin rather activity; substrate profiles were quite similar. Differences in substrate specificity should be expected in other species. The gene is duplicated in Lactococcus lactis on the plasmid that bears it. A shortened second copy is found in Bacillus subtilis.
Probab=87.93 E-value=0.7 Score=46.29 Aligned_cols=44 Identities=27% Similarity=0.411 Sum_probs=31.4
Q ss_pred EEeCCCCceEEeeccCCCCEEEEc-HHHHhcCCHHHHHHHHHHHHHHHHcc
Q 024914 145 VRQSPVPNAYTLAISGKKPFVVVH-TSLVELLTRKELQAVLAHELGHLKCD 194 (260)
Q Consensus 145 v~~~~~~NAfa~G~~~~~~~Ivi~-~~Ll~~L~~~EL~aVLaHElgHi~~~ 194 (260)
-.++..+.||++|..+..|+|.++ ++ +-++ ...|+||+||-.|.
T Consensus 348 ~r~gK~~Ga~~~~~~~~~p~il~N~~~-----~~~d-v~TLaHElGHa~H~ 392 (591)
T TIGR00181 348 ENKGKRSGAYSIGGYKVKPYILMNWDG-----TLNS-VFTLAHELGHSMHS 392 (591)
T ss_pred CCCCCCCCcccCCCCCCCCeEEEecCC-----Ccch-HHHHHHHhhhHHHH
Confidence 345667889999987778899776 23 2223 35899999998743
No 38
>COG3590 PepO Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=87.82 E-value=0.11 Score=51.66 Aligned_cols=48 Identities=23% Similarity=0.278 Sum_probs=34.6
Q ss_pred EEEEeCCCCceEEeeccCCCCEEEEcHHHHhc--CCH--------HHHHHHHHHHHHHHHc
Q 024914 143 LYVRQSPVPNAYTLAISGKKPFVVVHTSLVEL--LTR--------KELQAVLAHELGHLKC 193 (260)
Q Consensus 143 vyv~~~~~~NAfa~G~~~~~~~Ivi~~~Ll~~--L~~--------~EL~aVLaHElgHi~~ 193 (260)
-+.+.....|||-- +.+.-||++..+|+. .++ .-+-+|||||+||---
T Consensus 443 eW~M~pq~VNAYYn---p~~N~IVFPAAILQ~PFfd~ea~~a~NYGgIGaVIgHEI~HgFD 500 (654)
T COG3590 443 EWEMPPQTVNAYYN---PQKNEIVFPAAILQAPFFDPEADSAANYGGIGAVIGHEIGHGFD 500 (654)
T ss_pred hcCCCHHHhhhhcC---CCCceEeeeHHhcCCCCCCCCcchhhcccCccceehhhhccccc
Confidence 34444456899853 466799999999974 222 2389999999999763
No 39
>PF02031 Peptidase_M7: Streptomyces extracellular neutral proteinase (M7) family; InterPro: IPR000013 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M7 (snapalysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. With a molecular weight of around 16kDa, Streptomyces extracellular neutral protease is one of the smallest known proteases []; it is capable of hydrolysing milk proteins []. The enzyme is synthesised as a proenzyme with a signal peptide, a propeptide and an active domain that contains the conserved HEXXH motif characteristic of metalloproteases. Although family M7 shows active site sequence similarity to other members, it differs in one major respect: the third zinc ligand appears to be an aspartate residue rather than the usual histidine.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 1C7K_A 1KUH_A.
Probab=86.45 E-value=2.3 Score=34.62 Aligned_cols=39 Identities=21% Similarity=0.236 Sum_probs=23.8
Q ss_pred CCceEEeeccCCCCEEEEcHHHHhcCCHHHHHHHHHHHHHHHHc
Q 024914 150 VPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKC 193 (260)
Q Consensus 150 ~~NAfa~G~~~~~~~Ivi~~~Ll~~L~~~EL~aVLaHElgHi~~ 193 (260)
.+-|.+.|. .+.+|.+...--+..+. ++ |.+||+||+..
T Consensus 52 ~sya~~~g~--G~G~I~l~~~~~qgy~~--~R-IaaHE~GHiLG 90 (132)
T PF02031_consen 52 GSYASTDGL--GSGYIFLDYQQNQGYNS--TR-IAAHELGHILG 90 (132)
T ss_dssp --EEEE-SS--S-EEEEEEHHHHHHS-H--HH-HHHHHHHHHHT
T ss_pred CcccccCCC--CcEEEEechHHhhCCcc--ce-eeeehhccccC
Confidence 344566664 56799998764444443 33 99999999983
No 40
>PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57. The catalytic triad for proteases in this entry is HE-H-H, which in many members is in the sequence motif HEIGH [].
Probab=86.32 E-value=0.87 Score=40.11 Aligned_cols=35 Identities=20% Similarity=0.438 Sum_probs=25.6
Q ss_pred CEEEEcHHHHhcCCHHHHHHHHHHHHHHHH-ccChHHH
Q 024914 163 PFVVVHTSLVELLTRKELQAVLAHELGHLK-CDHGVWL 199 (260)
Q Consensus 163 ~~Ivi~~~Ll~~L~~~EL~aVLaHElgHi~-~~H~~~~ 199 (260)
+.|.| .+ ++..+.+..+.||.|||||.. -||.-|.
T Consensus 118 ~~I~I-~~-~~~~~~~~~~hvi~HEiGH~IGfRHTD~~ 153 (211)
T PF12388_consen 118 KFIQI-YG-LSNYSVNVIEHVITHEIGHCIGFRHTDYF 153 (211)
T ss_pred ceEEE-Ee-cCCCchhHHHHHHHHHhhhhccccccCcC
Confidence 36777 33 456678889999999999987 3665543
No 41
>COG1164 Oligoendopeptidase F [Amino acid transport and metabolism]
Probab=86.20 E-value=0.98 Score=45.69 Aligned_cols=50 Identities=30% Similarity=0.478 Sum_probs=35.6
Q ss_pred CCcEEEEeCCCCceEEeeccC-CCCEEEEcHHHHhcCCHHHHHHHHHHHHHHHHcc
Q 024914 140 APDLYVRQSPVPNAYTLAISG-KKPFVVVHTSLVELLTRKELQAVLAHELGHLKCD 194 (260)
Q Consensus 140 ~p~vyv~~~~~~NAfa~G~~~-~~~~Ivi~~~Ll~~L~~~EL~aVLaHElgHi~~~ 194 (260)
..+++-..++.+.||+.|... .+|+|.++=. . +... ..+|+||+||-.+.
T Consensus 344 WiD~~~~~gKrsGaYs~~~~~~~~p~IlmN~~---g-t~~d-V~TLaHElGHs~Hs 394 (598)
T COG1164 344 WIDVYPRKGKRSGAYSIGFYKGDHPFILMNYD---G-TLRD-VFTLAHELGHSVHS 394 (598)
T ss_pred CeeccCCCCCCCCcccCCCCCCCCCeEEEeCC---C-chhH-HHHHHHHccHHHHH
Confidence 345666667789999999866 7899987632 1 2222 46899999999853
No 42
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase. Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
Probab=83.14 E-value=3.5 Score=35.53 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=18.5
Q ss_pred CCHHHHHHHHHHHHHHHHccC
Q 024914 175 LTRKELQAVLAHELGHLKCDH 195 (260)
Q Consensus 175 L~~~EL~aVLaHElgHi~~~H 195 (260)
++-+++..|+-|||+|+..+.
T Consensus 77 l~~~~i~~t~lHELaH~~~~~ 97 (186)
T PF08325_consen 77 LPYETILGTMLHELAHNVHGP 97 (186)
T ss_pred eeHHHHHHHHHHHHHhcccCC
Confidence 578999999999999999653
No 43
>TIGR02289 M3_not_pepF oligoendopeptidase, M3 family. This family consists of probable oligoendopeptidases in the M3 family, related to lactococcal PepF and group B streptococcal PepB (TIGR00181) but in a distinct clade with considerable sequence differences. The likely substrate is small peptides and not whole proteins, as with PepF, but members are not characterized and the activity profile may differ. Several bacteria have both a member of this family and a member of the PepF family.
Probab=82.20 E-value=1.8 Score=43.14 Aligned_cols=65 Identities=28% Similarity=0.352 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhCCCC------------CcEEEEeCCCCceEEeeccC-CCCEEEEc-HHHHhcCCHHHHHHHHHHHHH
Q 024914 124 ELHQLMTEAAEILNLEA------------PDLYVRQSPVPNAYTLAISG-KKPFVVVH-TSLVELLTRKELQAVLAHELG 189 (260)
Q Consensus 124 ~L~~~v~~l~~~l~i~~------------p~vyv~~~~~~NAfa~G~~~-~~~~Ivi~-~~Ll~~L~~~EL~aVLaHElg 189 (260)
++.+.+.++.+.++... -+++-.++..+.||+++++. ..|+|.++ ++ +.+++ .+|+||+|
T Consensus 273 ~~~~~~~~~~~~l~~~~~e~~~~~~~~~~iD~~~r~gK~~Gayc~~~~~~~~P~I~~Nf~~-----t~~dv-~TL~HElG 346 (549)
T TIGR02289 273 FLLEKAEKMYKELSLEFYEFFNFMREKNLLDLESRKGKAAGGYCTYLPKYKAPFIFSNFNG-----TSGDI-DVLTHEAG 346 (549)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHhcCccccCCCCCCCCCcccCCCCCCCCcEEEEeCCC-----ChhHH-HHHHHHhh
Confidence 55566665555554321 12333456678899998654 57888765 23 33444 47999999
Q ss_pred HHHcc
Q 024914 190 HLKCD 194 (260)
Q Consensus 190 Hi~~~ 194 (260)
|..|.
T Consensus 347 Ha~H~ 351 (549)
T TIGR02289 347 HAFHV 351 (549)
T ss_pred HHHHH
Confidence 99744
No 44
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=81.97 E-value=1.7 Score=33.20 Aligned_cols=33 Identities=30% Similarity=0.160 Sum_probs=23.2
Q ss_pred CCEEEEcHHHHhcCCHHHHHHHHHHHHHHHHccChH
Q 024914 162 KPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGV 197 (260)
Q Consensus 162 ~~~Ivi~~~Ll~~L~~~EL~aVLaHElgHi~~~H~~ 197 (260)
.+.|++.. ..-+++.+..+++||++|....+..
T Consensus 10 ~~~i~~~~---~~~~~~~~~~~l~HE~~H~~~~~~~ 42 (128)
T PF13485_consen 10 FNRIVVYF---QGSDEDWLDRVLAHELAHQWFGNYF 42 (128)
T ss_pred CCEEEEec---CCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 34565433 3456778889999999999865543
No 45
>COG2738 Predicted Zn-dependent protease [General function prediction only]
Probab=79.14 E-value=14 Score=32.40 Aligned_cols=41 Identities=22% Similarity=0.152 Sum_probs=28.9
Q ss_pred cCCCCEEEEcHHHHhcCCHHHHHHHHHHHHHHHHccChHHHH
Q 024914 159 SGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLT 200 (260)
Q Consensus 159 ~~~~~~Ivi~~~Ll~~L~~~EL~aVLaHElgHi~~~H~~~~~ 200 (260)
.++++.+-+++.-...-+- .=.+|-|||.||-.+++.-|..
T Consensus 72 DP~~kvvrLSe~~y~g~Si-a~~aVAAHEVGHAiQd~~~Y~~ 112 (226)
T COG2738 72 DPRRKVVRLSEANYYGPSI-AAIAVAAHEVGHAIQDQEDYAF 112 (226)
T ss_pred ChhhheeeccccccCCccH-HHHHHHHHHhhHHHhhhcccHH
Confidence 3456678888776544343 4468999999999987765544
No 46
>TIGR02290 M3_fam_3 oligoendopeptidase, pepF/M3 family. The M3 family of metallopeptidases contains several distinct clades. Oligoendopeptidase F as characterized in Lactococcus, the functionally equivalent oligoendopeptidase B of group B Streptococcus, and closely related sequences are described by TIGR00181. The present family is quite similar but forms a distinct clade, and a number of species have one member of each. A greater sequence difference separates members of TIGR02289, probable oligoendopeptidases of the M3 family that probably should not be designated PepF.
Probab=78.58 E-value=2.6 Score=42.24 Aligned_cols=47 Identities=30% Similarity=0.449 Sum_probs=31.0
Q ss_pred cEEEEeCCCCceEEeeccC-CCCEEEEcHHHHhcCCHHHHHHHHHHHHHHHHc
Q 024914 142 DLYVRQSPVPNAYTLAISG-KKPFVVVHTSLVELLTRKELQAVLAHELGHLKC 193 (260)
Q Consensus 142 ~vyv~~~~~~NAfa~G~~~-~~~~Ivi~~~Ll~~L~~~EL~aVLaHElgHi~~ 193 (260)
+++-.++..+.||++|+.+ ..|+|.++=. . +-+++ ..|+||+||-.|
T Consensus 341 D~~~r~gK~~Ga~~~~~~~~~~p~i~~N~~--~--~~~~v-~TL~HE~GHa~H 388 (587)
T TIGR02290 341 DAEPRPGKRGGAFCTGFPPSKEPRVLMNYD--G--SRRDV-STLAHELGHAYH 388 (587)
T ss_pred ccCCCCCCCCCcccCCCCCCCCCEEEEecC--C--CchhH-HHHHHHhhHHHH
Confidence 3444556678899998654 3588877611 1 22333 468999999985
No 47
>COG2321 Predicted metalloprotease [General function prediction only]
Probab=78.28 E-value=5.4 Score=36.58 Aligned_cols=66 Identities=15% Similarity=0.085 Sum_probs=39.0
Q ss_pred HHHHHHHHhCC--CCCcEEEEeCC-----CCceEEee--ccCCCCEEEEcHHHHhcCC-------HHHHHHHHHHHHHHH
Q 024914 128 LMTEAAEILNL--EAPDLYVRQSP-----VPNAYTLA--ISGKKPFVVVHTSLVELLT-------RKELQAVLAHELGHL 191 (260)
Q Consensus 128 ~v~~l~~~l~i--~~p~vyv~~~~-----~~NAfa~G--~~~~~~~Ivi~~~Ll~~L~-------~~EL~aVLaHElgHi 191 (260)
.+..+-+..+- ..|++.++... ..+--++| +++....+++.....+.|. +=.-+.|+|||+||.
T Consensus 99 ~W~~if~~~~~~Y~~Ptlvlf~~~v~t~CG~assasGPFYCP~D~kvYlDlsFf~~m~~~fga~GdfAqaYViAHEVGHH 178 (295)
T COG2321 99 TWMQIFQESGRTYQKPTLVLFSGQVRTGCGFASSASGPFYCPADTKVYLDLSFFDEMKTKFGASGDFAQAYVIAHEVGHH 178 (295)
T ss_pred HHHHHHHHhcccccCCeEEEecCccccCcCCCCcCCCCeecCCCceEEEehhHHHHHHHHhcCCccHHHHHHHHhhhhHH
Confidence 33444444333 36777765421 12222232 1234568999988887664 235789999999998
Q ss_pred Hc
Q 024914 192 KC 193 (260)
Q Consensus 192 ~~ 193 (260)
.+
T Consensus 179 VQ 180 (295)
T COG2321 179 VQ 180 (295)
T ss_pred HH
Confidence 75
No 48
>PF00413 Peptidase_M10: Matrixin This Prosite motif covers only the active site.; InterPro: IPR001818 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M10 (clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Sequences having this domain are extracellular metalloproteases, such as collagenase and stromelysin, which degrade the extracellular matrix, are known as matrixins. They are zinc-dependent, calcium-activated proteases synthesised as inactive precursors (zymogens), which are proteolytically cleaved to yield the active enzyme [, ]. All matrixins and related proteins possess 2 domains: an N-terminal domain, and a zinc-binding active site domain. The N-terminal domain peptide, cleaved during the activation step, includes a conserved PRCGVPDV octapeptide, known as the cysteine switch, whose Cys residue chelates the active site zinc atom, rendering the enzyme inactive [, ]. The active enzyme degrades components of the extracellular matrix, playing a role in the initial steps of tissue remodelling during morphogenesis, wound healing, angiogenesis and tumour invasion [, ].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0031012 extracellular matrix; PDB: 1Q3A_C 3V96_B 1HV5_D 1CXV_A 1SRP_A 1FBL_A 1ZVX_A 1JH1_A 1I76_A 2OY4_A ....
Probab=77.65 E-value=1.6 Score=35.24 Aligned_cols=30 Identities=23% Similarity=0.205 Sum_probs=19.5
Q ss_pred CEEEEcHHHHhc--CCHHHHHHHHHHHHHHHH
Q 024914 163 PFVVVHTSLVEL--LTRKELQAVLAHELGHLK 192 (260)
Q Consensus 163 ~~Ivi~~~Ll~~--L~~~EL~aVLaHElgHi~ 192 (260)
..|.+...---. .+..++..|+.||+||..
T Consensus 86 ~~i~~~~~~~~~~~~~~~~~~~v~~HEiGHaL 117 (154)
T PF00413_consen 86 GDIHFNDDESWTIDDSGNDLQSVAIHEIGHAL 117 (154)
T ss_dssp TEEEEETTSHEESSSSSEEHHHHHHHHHHHHT
T ss_pred ccccccccccchhhhhhhhhhhhhhhcccccc
Confidence 355555443211 234579999999999996
No 49
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=77.43 E-value=1.6 Score=35.87 Aligned_cols=16 Identities=50% Similarity=0.713 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 024914 177 RKELQAVLAHELGHLK 192 (260)
Q Consensus 177 ~~EL~aVLaHElgHi~ 192 (260)
..++..|+.||+||..
T Consensus 101 ~~~~~~~~~HEiGHaL 116 (156)
T cd04279 101 AENLQAIALHELGHAL 116 (156)
T ss_pred chHHHHHHHHHhhhhh
Confidence 4689999999999998
No 50
>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.
Probab=76.76 E-value=1.6 Score=35.71 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=21.2
Q ss_pred CCEEEEcHHHHhc----CCHHHHHHHHHHHHHHHHc
Q 024914 162 KPFVVVHTSLVEL----LTRKELQAVLAHELGHLKC 193 (260)
Q Consensus 162 ~~~Ivi~~~Ll~~----L~~~EL~aVLaHElgHi~~ 193 (260)
+..|.+...-+.. .+.+++.+++.||+||...
T Consensus 72 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~HEiGHaLG 107 (165)
T cd04268 72 TGEILLARVYLYSSFVEYSGARLRNTAEHELGHALG 107 (165)
T ss_pred CccEEeeEEEEchhHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456555543321 2346799999999999983
No 51
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.11 E-value=3.7 Score=38.39 Aligned_cols=35 Identities=20% Similarity=0.197 Sum_probs=32.2
Q ss_pred CEEEEcHHHHhcCCHHHHHHHHHHHHHHHHccChH
Q 024914 163 PFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGV 197 (260)
Q Consensus 163 ~~Ivi~~~Ll~~L~~~EL~aVLaHElgHi~~~H~~ 197 (260)
-.+.++....-.++.++++|.|-||+-|+...|..
T Consensus 52 ~~~y~NPei~~~~p~~~~~aLl~HEV~Hi~l~Hi~ 86 (396)
T COG3864 52 FTMYFNPEIFLNCPISEMKALLKHEVYHIMLNHIK 86 (396)
T ss_pred eEEEeCHHHHccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999974
No 52
>PF09768 Peptidase_M76: Peptidase M76 family; InterPro: IPR019165 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. Mitochondrial inner membrane protease ATP23 has two roles in the assembly of mitochondrial ATPase. Firstly, it acts as a protease that removes the N-terminal 10 residues of mitochondrial ATPase CF(0) subunit 6 (ATP6) at the intermembrane space side. Secondly, it is involved in the correct assembly of the membrane-embedded ATPase CF(0) particle, probably mediating association of ATP6 with the subunit 9 ring [, ].; GO: 0004222 metalloendopeptidase activity
Probab=75.95 E-value=5.1 Score=34.23 Aligned_cols=67 Identities=19% Similarity=0.174 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHhCCC-CCc-EEEEeCCCCceEEeeccCCCCEEEEcHHHHhcCCHHHHHHHHHHHHHHHH
Q 024914 122 LPELHQLMTEAAEILNLE-APD-LYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLK 192 (260)
Q Consensus 122 ~p~L~~~v~~l~~~l~i~-~p~-vyv~~~~~~NAfa~G~~~~~~~Ivi~~~Ll~~L~~~EL~aVLaHElgHi~ 192 (260)
.|.+.-+++.+. .+|-+ .++ .+.-..-..+ .+-|+.+.++-|+|-..-+ -+..++.-+|+|||-|..
T Consensus 15 sp~v~fl~~~~~-~~gc~~~~~~~i~c~~C~~~-~~Ggf~p~~~~I~lC~N~~--~~~~~l~~~l~HELIHay 83 (173)
T PF09768_consen 15 SPTVRFLMEALK-KLGCPPVPPRHIKCEPCDSS-VSGGFDPSKKGIVLCQNRI--RSQGHLEDTLTHELIHAY 83 (173)
T ss_pred CcHHHHHHHHHH-HcCCCCCCCCCeEEEECcCC-CcCCccCCCCCEEEeeCCC--CCHHHHHHHHHHHHHHHH
Confidence 344554555544 46655 332 2222221111 3344544234455544423 378999999999999987
No 53
>cd04270 ZnMc_TACE_like Zinc-dependent metalloprotease; TACE_like subfamily. TACE, the tumor-necrosis factor-alpha converting enzyme, releases soluble TNF-alpha from transmembrane pro-TNF-alpha.
Probab=75.59 E-value=2 Score=38.43 Aligned_cols=18 Identities=50% Similarity=0.495 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHHHHHHHc
Q 024914 176 TRKELQAVLAHELGHLKC 193 (260)
Q Consensus 176 ~~~EL~aVLaHElgHi~~ 193 (260)
.......++|||+||-..
T Consensus 163 ~~~~~a~t~AHElGHnlG 180 (244)
T cd04270 163 PTKESDLVTAHELGHNFG 180 (244)
T ss_pred chhHHHHHHHHHHHHhcC
Confidence 345678999999999884
No 54
>cd06460 M32_Taq Peptidase family M32 is a subclass of metallocarboxypeptidases which are distributed mainly in bacteria and archaea, and contain a HEXXH motif that coordinates a divalent cation such as Zn2+ or Co2+, so far only observed in the active site of neutral metallopeptidases but not in carboxypeptidases. M32 includes the thermostable carboxypeptidases (E.C. 3.4.17.19) from Thermus aquaticus (TaqCP) and Pyrococcus furiosus (PfuCP), which have broad specificities toward a wide range of C-terminal substrates that include basic, aromatic, neutral and polar amino acids. These enzymes have a similar fold to the M3 peptidases such as neurolysin and the M2 angiotensin converting enzyme (ACE). Novel peptidases from protozoa Trypanosoma cruzi, a causative agent of Chagas' disease, and Leishmania major, a parasite that causes leishmaniasis, are the first eukaryotic M32 enzymes identified so far, thus making these enzymes an attractive potential target for drug development against these o
Probab=74.96 E-value=24 Score=34.03 Aligned_cols=66 Identities=17% Similarity=0.100 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhCCCCCcEEEEeCCCCceEEeeccCCCCEEEEcHHHHhcCCHHHHHHHHHHHHHHHHccC
Q 024914 125 LHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDH 195 (260)
Q Consensus 125 L~~~v~~l~~~l~i~~p~vyv~~~~~~NAfa~G~~~~~~~Ivi~~~Ll~~L~~~EL~aVLaHElgHi~~~H 195 (260)
-.+..+++.+.+|.+..+-++-.++ +.|++|+++..++|.. ..-+ -+.-.=.+-++||+||-.+..
T Consensus 109 Q~~~~~~~~~~~g~df~~griD~s~--hpF~~~~~~~dvRItt--~y~~-~d~~~~l~t~iHE~GHalye~ 174 (396)
T cd06460 109 QEALGRELLEALGFDFDRGRLDVSA--HPFTGGLGPGDVRITT--RYDE-NDFRSALFSTIHETGHALYEQ 174 (396)
T ss_pred HHHHHHHHHHHhCCcccCCeeecCC--CCCCCCCCCCCceEEe--eeCC-cchHHHHHHHHHHhhHHHHHh
Confidence 3445667888888775444544443 4599887555555533 2111 111122245789999998766
No 55
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=72.36 E-value=12 Score=34.81 Aligned_cols=69 Identities=14% Similarity=0.134 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhCCC--CCcEEEEeCCCCceEEeeccCCCCEEEEcHHHH-hc--C----CHHHHHHHHHHHHHHHHccC
Q 024914 125 LHQLMTEAAEILNLE--APDLYVRQSPVPNAYTLAISGKKPFVVVHTSLV-EL--L----TRKELQAVLAHELGHLKCDH 195 (260)
Q Consensus 125 L~~~v~~l~~~l~i~--~p~vyv~~~~~~NAfa~G~~~~~~~Ivi~~~Ll-~~--L----~~~EL~aVLaHElgHi~~~H 195 (260)
..+.++-+.+.+|++ .+++-++.-|..+.-++. +-+.|.+....+ .. . ...++..+||||++|.--|+
T Consensus 234 ~~~~l~~~~~~~g~~yp~~k~~~v~~p~~~~~~me---~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~iahElahqWfGn 310 (390)
T PF01433_consen 234 APKALEYYEEYFGIPYPFKKLDIVAVPDFPFGGME---NWGLITYRESYLLYDPDISTIGDKQEIASLIAHELAHQWFGN 310 (390)
T ss_dssp HHHHHHHHHHHHTS--SSSEEEEEEEST-SSSEE-----TTEEEEEGGGTS-STTTS-HHHHHHHHHHHHHHHHTTTBTT
T ss_pred hHHHHHHHHhhccccceecceeEEEEecccccccc---ccccccccccccccCcccccchhhhhhHHHHHHHHHHHHhcc
Confidence 344555566667865 345545443332211222 234677766644 11 1 13578999999999998776
Q ss_pred h
Q 024914 196 G 196 (260)
Q Consensus 196 ~ 196 (260)
.
T Consensus 311 ~ 311 (390)
T PF01433_consen 311 L 311 (390)
T ss_dssp T
T ss_pred C
Confidence 4
No 56
>PF14891 Peptidase_M91: Effector protein
Probab=72.19 E-value=13 Score=31.26 Aligned_cols=21 Identities=33% Similarity=0.112 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHccChHHHH
Q 024914 178 KELQAVLAHELGHLKCDHGVWLT 200 (260)
Q Consensus 178 ~EL~aVLaHElgHi~~~H~~~~~ 200 (260)
..=..+|+|||+|.. |.+..+
T Consensus 101 ~~p~v~L~HEL~HA~--~~~~Gt 121 (174)
T PF14891_consen 101 RPPFVVLYHELIHAY--DYMNGT 121 (174)
T ss_pred HHHHHHHHHHHHHHH--HHHCCC
Confidence 345679999999998 444433
No 57
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=72.15 E-value=5.7 Score=42.01 Aligned_cols=69 Identities=20% Similarity=0.182 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhCCC--CCcEEEEeCCCCceEEeeccCCCCEEEEcHHHHh----cCC---HHHHHHHHHHHHHHHHccCh
Q 024914 126 HQLMTEAAEILNLE--APDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVE----LLT---RKELQAVLAHELGHLKCDHG 196 (260)
Q Consensus 126 ~~~v~~l~~~l~i~--~p~vyv~~~~~~NAfa~G~~~~~~~Ivi~~~Ll~----~L~---~~EL~aVLaHElgHi~~~H~ 196 (260)
.+.++-..+.+|++ .+++-++-.+..|.-+ + .+...+.+++..+- ..+ .+.+..|+|||++|--.|+-
T Consensus 223 ~~~L~~~E~~fG~pYPl~k~diVavpdf~~Ga--M-EN~GLi~f~e~~lL~~~~~~td~~~~~i~~VIaHElaHqWfGNl 299 (863)
T TIGR02414 223 KKAMKWDEEVFGLEYDLDIFMIVAVDDFNMGA--M-ENKGLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNR 299 (863)
T ss_pred HHHHHHHHHHhCCCCChhhccEEecCCCCCcc--c-cccceeccccceEEeCCCCCCHHHHHHHHHHHHHHHHHHHhcce
Confidence 34444455577865 3445455444433222 2 23344544444431 112 23478999999999887764
Q ss_pred H
Q 024914 197 V 197 (260)
Q Consensus 197 ~ 197 (260)
+
T Consensus 300 V 300 (863)
T TIGR02414 300 V 300 (863)
T ss_pred e
Confidence 3
No 58
>PF13688 Reprolysin_5: Metallo-peptidase family M12; PDB: 2FV5_B 3EWJ_A 3KME_A 3L0T_B 1BKC_E 3G42_D 2I47_D 2FV9_B 3LEA_A 1ZXC_B ....
Probab=71.80 E-value=2.1 Score=36.26 Aligned_cols=17 Identities=29% Similarity=0.346 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHHHHH
Q 024914 176 TRKELQAVLAHELGHLK 192 (260)
Q Consensus 176 ~~~EL~aVLaHElgHi~ 192 (260)
+...-.-++|||+||..
T Consensus 138 ~~~~~~~~~AHEiGH~l 154 (196)
T PF13688_consen 138 PTYNGAITFAHEIGHNL 154 (196)
T ss_dssp -HHHHHHHHHHHHHHHT
T ss_pred CCCceehhhHHhHHHhc
Confidence 45677789999999987
No 59
>cd06459 M3B_Oligoendopeptidase_F Peptidase family M3B Oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and includes oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the PepF Bacillus amyloliquefaciens oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over expressed from a multicopy plasmid.
Probab=70.54 E-value=3.7 Score=38.85 Aligned_cols=43 Identities=35% Similarity=0.574 Sum_probs=27.8
Q ss_pred EeCCCCceEEeecc-CCCCEEEEcHHHHhcCCHHHHHHHHHHHHHHHHc
Q 024914 146 RQSPVPNAYTLAIS-GKKPFVVVHTSLVELLTRKELQAVLAHELGHLKC 193 (260)
Q Consensus 146 ~~~~~~NAfa~G~~-~~~~~Ivi~~~Ll~~L~~~EL~aVLaHElgHi~~ 193 (260)
.++..+.||++++. +..|+|+++-. . +-++ ...++||+||..+
T Consensus 192 r~gK~~gaf~~~~~~~~~p~i~~n~~--~--~~~~-v~tl~HE~GHa~h 235 (427)
T cd06459 192 RKGKRSGAYCTGLPPGKHPFILMNFN--G--TLDD-VFTLAHELGHAFH 235 (427)
T ss_pred CCCCCCCeecCCCCCCCCCeEEecCC--C--Chhh-HHHHHHHhhHHHH
Confidence 34556778998875 45677766532 1 3344 4578999999663
No 60
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=70.28 E-value=2.4 Score=35.28 Aligned_cols=41 Identities=22% Similarity=0.140 Sum_probs=20.5
Q ss_pred CCCCceEEeeccCCCCEEEEcHHHHhcCCH-HHHHHHHHHHHHHHHc
Q 024914 148 SPVPNAYTLAISGKKPFVVVHTSLVELLTR-KELQAVLAHELGHLKC 193 (260)
Q Consensus 148 ~~~~NAfa~G~~~~~~~Ivi~~~Ll~~L~~-~EL~aVLaHElgHi~~ 193 (260)
....|||=-| ..++..+|--..+.+ ..=.=|+|||++|-.-
T Consensus 107 ~~~~NAfW~g-----~~m~yGdG~~~~f~~~~~~lDVvaHEltHGVt 148 (150)
T PF01447_consen 107 KNYNNAFWNG-----SQMVYGDGDGQIFKPFASSLDVVAHELTHGVT 148 (150)
T ss_dssp SSTT-EEE-S-----SSEEEE---SSSBS-GGG-HHHHHHHHHHHHH
T ss_pred CCccCccccC-----CEEEEECCCCcccccCccccceeeeccccccc
Confidence 4578999432 257777664322221 1112299999999653
No 61
>PF13582 Reprolysin_3: Metallo-peptidase family M12B Reprolysin-like; PDB: 3P24_C.
Probab=69.68 E-value=2.6 Score=32.87 Aligned_cols=11 Identities=45% Similarity=0.727 Sum_probs=10.1
Q ss_pred HHHHHHHHHHH
Q 024914 182 AVLAHELGHLK 192 (260)
Q Consensus 182 aVLaHElgHi~ 192 (260)
.+++||+||..
T Consensus 109 ~~~~HEiGH~l 119 (124)
T PF13582_consen 109 DTFAHEIGHNL 119 (124)
T ss_dssp THHHHHHHHHT
T ss_pred eEeeehhhHhc
Confidence 89999999976
No 62
>PF01431 Peptidase_M13: Peptidase family M13 This is family M13 in the peptidase classification. ; InterPro: IPR018497 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M13 (neprilysin family, clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. M13 peptidases are well-studied proteases found in a wide range of organisms including mammals and bacteria. In mammals they participate in processes such as cardiovascular development, blood-pressure regulation, nervous control of respiration, and regulation of the function of neuropeptides in the central nervous system. In bacteria they may be used for digestion of milk [, ]. The family includes eukaryotic and prokaryotic oligopeptidases, as well as some of the proteins responsible for the molecular basis of the blood group antigens e.g. Kell []. Neprilysin (3.4.24.11 from EC), is another member of this group, it is variously known as common acute lymphoblastic leukemia antigen (CALLA), enkephalinase (gp100) and neutral endopeptidase metalloendopeptidase (NEP). It is a plasma membrane-bound mammalian enzyme that is able to digest biologically-active peptides, including enkephalins []. The zinc ligands of neprilysin are known and are analogous to those in thermolysin, a related peptidase [, ]. Neprilysins, like thermolysin, are inhibited by phosphoramidon, which appears to selectively inhibit this family in mammals. The enzymes are all oligopeptidases, digesting oligo- and polypeptides, but not proteins []. Neprilysin consists of a short cytoplasmic domain, a membrane-spanning region and a large extracellular domain. The cytoplasmic domain contains a conformationally-restrained octapeptide, which is thought to act as a stop transfer sequence that prevents proteolysis and secretion [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QPJ_A 1R1I_A 1R1J_A 1Y8J_A 1R1H_A 1DMT_A 2YB9_A 3DWB_A 3ZUK_A.
Probab=68.06 E-value=3.8 Score=35.07 Aligned_cols=36 Identities=25% Similarity=0.262 Sum_probs=25.4
Q ss_pred CCCEEEEcHHHHhcC--C--------HHHHHHHHHHHHHHHHccCh
Q 024914 161 KKPFVVVHTSLVELL--T--------RKELQAVLAHELGHLKCDHG 196 (260)
Q Consensus 161 ~~~~Ivi~~~Ll~~L--~--------~~EL~aVLaHElgHi~~~H~ 196 (260)
....|+|+.++++.- + -.-|-+|||||+.|.--.+.
T Consensus 7 ~~N~i~ip~~~l~~P~f~~~~p~~~~yg~lG~ilahel~hafd~~g 52 (206)
T PF01431_consen 7 RFNSIVIPAGILQPPFFDPNYPPALNYGGLGFILAHELMHAFDPEG 52 (206)
T ss_dssp TTTEEEEEGGGSSTTT--TTS-HHHHHHTHHHHHHHHHHHCTSTTG
T ss_pred ccCEEEecHHHhCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 345788888887631 1 13488999999999875544
No 63
>cd04269 ZnMc_adamalysin_II_like Zinc-dependent metalloprotease; adamalysin_II_like subfamily. Adamalysin II is a snake venom zinc endopeptidase. This subfamily contains other snake venom metalloproteinases, as well as membrane-anchored metalloproteases belonging to the ADAM family. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=67.04 E-value=4.1 Score=34.53 Aligned_cols=16 Identities=38% Similarity=0.441 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 024914 177 RKELQAVLAHELGHLK 192 (260)
Q Consensus 177 ~~EL~aVLaHElgHi~ 192 (260)
......++|||+||..
T Consensus 128 ~~~~a~~~AHElGH~l 143 (194)
T cd04269 128 LLLFAVTMAHELGHNL 143 (194)
T ss_pred hHHHHHHHHHHHHhhc
Confidence 3577899999999998
No 64
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=65.71 E-value=3.6 Score=34.70 Aligned_cols=13 Identities=46% Similarity=0.583 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHc
Q 024914 181 QAVLAHELGHLKC 193 (260)
Q Consensus 181 ~aVLaHElgHi~~ 193 (260)
.-++|||+||...
T Consensus 112 ~~~~aHElGH~lG 124 (173)
T PF13574_consen 112 IDTFAHELGHQLG 124 (173)
T ss_dssp HHHHHHHHHHHHT
T ss_pred eeeehhhhHhhcC
Confidence 4469999999983
No 65
>PF01432 Peptidase_M3: Peptidase family M3 This Prosite motif covers only the active site. This family belongs to family M3 of the peptidase classification.; InterPro: IPR001567 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M3 (clan MA(E)), subfamilies M3A and M3B. The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. The Thimet oligopeptidase family, is a large family of archaeal, bacterial and eukaryotic oligopeptidases that cleave medium sized peptides. The group contains: mitochondrial intermediate peptidase (3.4.24.59 from EC) Neurolysin, mitochondrial precursor, (3.4.24.16 from EC) Thimet oligopeptidase (3.4.24.15 from EC) Dipeptidyl carboxypeptidase (3.4.15.5 from EC) Oligopeptidase A (3.4.24.70 from EC) Oligoendopeptidase F ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QR4_B 3CE2_A 1Y79_1 2H1J_A 2H1N_A 2O36_A 1S4B_P 2O3E_A 1I1I_P.
Probab=64.56 E-value=5.7 Score=38.34 Aligned_cols=45 Identities=20% Similarity=0.399 Sum_probs=25.2
Q ss_pred CCCCceEEeeccCC-------CCEEEEcHHHHh-------cCCHHHHHHHHHHHHHHHHc
Q 024914 148 SPVPNAYTLAISGK-------KPFVVVHTSLVE-------LLTRKELQAVLAHELGHLKC 193 (260)
Q Consensus 148 ~~~~NAfa~G~~~~-------~~~Ivi~~~Ll~-------~L~~~EL~aVLaHElgHi~~ 193 (260)
+....||+.++.+. .|..+|....-. .|+-+++ ..|+||+||..|
T Consensus 197 gK~~ga~~~~~~~~~~~~~~~~~~~~i~~n~~~~~~~~~~ll~~~~v-~tLfHE~GHa~H 255 (458)
T PF01432_consen 197 GKRSGAFCFTLRPSRSDGERQLPVPYIFCNFTGPSAGKPSLLSHDDV-ETLFHEFGHAMH 255 (458)
T ss_dssp TS-SS-EEEEEEC-BTTSTCECEEEEEEEEE-S-BTTC--B-SHHHH-HHHHHHHHHHHH
T ss_pred CCCCCceeCCccCccccccCCCCceEEEecCCCCCCCCCCccChhhH-HHHHHHHhHHHH
Confidence 34567888876542 133333333222 3466777 678999999884
No 66
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=63.93 E-value=17 Score=38.33 Aligned_cols=68 Identities=16% Similarity=0.093 Sum_probs=38.6
Q ss_pred HHHHHHHHHhCCC--CCcEEEEeCCCCceEEeeccCCCCEEEEcHHHHhc--CC---HHHHHHHHHHHHHHHHccChH
Q 024914 127 QLMTEAAEILNLE--APDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVEL--LT---RKELQAVLAHELGHLKCDHGV 197 (260)
Q Consensus 127 ~~v~~l~~~l~i~--~p~vyv~~~~~~NAfa~G~~~~~~~Ivi~~~Ll~~--L~---~~EL~aVLaHElgHi~~~H~~ 197 (260)
+.++-+-+.+|+| .|++-++--|..++-++ .+-..|.+.+.++.. .+ .+.+..|++||++|---|+.+
T Consensus 230 ~~l~~~e~~fg~pYP~~k~d~V~vP~f~~GaM---En~Glit~~e~~l~~~~~~~~~~~~~~~viaHElAHqWFGnlV 304 (831)
T TIGR02412 230 QGLAFFHRKFGYPYPFKKYDQIFVPEFNAGAM---ENAGCVTFAENFLHRAEATRAEKENRAGVILHEMAHMWFGDLV 304 (831)
T ss_pred HHHHHHHHHhCCCCCcccCCEEEcCCCCCCcc---cccceeeechhhccCCcCCHHHHHHHHHHHHHHHHHHHhCCEe
Confidence 3444455677866 34444444444332222 223377777665521 12 234778999999998887643
No 67
>cd04267 ZnMc_ADAM_like Zinc-dependent metalloprotease, ADAM_like or reprolysin_like subgroup. The adamalysin_like or ADAM family of metalloproteases contains proteolytic domains from snake venoms, proteases from the mammalian reproductive tract, and the tumor necrosis factor alpha convertase, TACE. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=63.44 E-value=3 Score=35.27 Aligned_cols=16 Identities=38% Similarity=0.387 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 024914 177 RKELQAVLAHELGHLK 192 (260)
Q Consensus 177 ~~EL~aVLaHElgHi~ 192 (260)
.-+...++|||+||..
T Consensus 130 ~~~~~~~~aHElGH~l 145 (192)
T cd04267 130 TLLTALTMAHELGHNL 145 (192)
T ss_pred ceeehhhhhhhHHhhc
Confidence 3467789999999998
No 68
>COG4324 Predicted aminopeptidase [General function prediction only]
Probab=62.71 E-value=6.1 Score=36.26 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=26.6
Q ss_pred EcHHHHhc---CCHHHHHHHHHHHHHHHH---ccChHHHH
Q 024914 167 VHTSLVEL---LTRKELQAVLAHELGHLK---CDHGVWLT 200 (260)
Q Consensus 167 i~~~Ll~~---L~~~EL~aVLaHElgHi~---~~H~~~~~ 200 (260)
+.++|++. .++.+|..+|=||++|-+ ++|...+-
T Consensus 181 FdDPlLstmlr~dd~~lA~LIFHELAHQk~Y~~~DtAFNE 220 (376)
T COG4324 181 FDDPLLSTMLRQDDTYLASLIFHELAHQKIYVNNDTAFNE 220 (376)
T ss_pred cccHHHHHHhcCChHHHHHHHHHHHhhheEeecCcchHhH
Confidence 45566665 488999999999999987 67777664
No 69
>PF01421 Reprolysin: Reprolysin (M12B) family zinc metalloprotease This Prosite motif covers only the active site.; InterPro: IPR001590 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12B (adamalysin family, clan (MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The adamalysins are zinc dependent endopeptidases found in snake venom. There are some mammalian proteins such as P78325 from SWISSPROT, and fertilin Q28472 from SWISSPROT. Fertilin and closely related proteins appear to not have some active site residues and may not be active enzymes. CD156 (also called ADAM8 (3.4.24 from EC) or MS2 human) has been implicated in extravasation of leukocytes. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2E3X_A 2W15_A 2W14_A 2W13_A 2W12_A 1ND1_A 3K7L_A 2DW2_A 2DW0_B 2DW1_A ....
Probab=62.46 E-value=6.7 Score=33.39 Aligned_cols=17 Identities=35% Similarity=0.587 Sum_probs=14.8
Q ss_pred CHHHHHHHHHHHHHHHH
Q 024914 176 TRKELQAVLAHELGHLK 192 (260)
Q Consensus 176 ~~~EL~aVLaHElgHi~ 192 (260)
+......++|||+||..
T Consensus 127 ~~~~~a~~~AHelGH~l 143 (199)
T PF01421_consen 127 SGLSFAVIIAHELGHNL 143 (199)
T ss_dssp SHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHhc
Confidence 46678899999999987
No 70
>PF05572 Peptidase_M43: Pregnancy-associated plasma protein-A; InterPro: IPR008754 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase M43 (cytophagalysin family, clan MA(M)), subfamily M43. The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example of this family is the pregnancy-associated plasma protein A (PAPP-A), which cleaves insulin-like growth factor (IGF) binding protein-4 (IGFBP-4), causing a dramatic reduction in its affinity for IGF-I and -II. Through this mechanism, PAPP-A is a regulator of IGF bioactivity in several systems, including the Homo sapiens ovary and the cardiovascular system [, , , ].; PDB: 3LUN_A 3LUM_B 2J83_A 2CKI_A.
Probab=62.07 E-value=4.6 Score=33.60 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=17.2
Q ss_pred EEEEcHHHHh-cCCHHHHHHHHHHHHHHHH
Q 024914 164 FVVVHTSLVE-LLTRKELQAVLAHELGHLK 192 (260)
Q Consensus 164 ~Ivi~~~Ll~-~L~~~EL~aVLaHElgHi~ 192 (260)
.|++....+. ..+.....-+|.||+||+.
T Consensus 52 ~vv~~~~~l~~~~~~~~~g~TltHEvGH~L 81 (154)
T PF05572_consen 52 GVVINYRYLGGNNSQYNFGKTLTHEVGHWL 81 (154)
T ss_dssp EEGGGSSSSTT--TTS-SSHHHHHHHHHHT
T ss_pred EEEEcCcccCCCCCccccccchhhhhhhhh
Confidence 3455433332 2234456789999999998
No 71
>cd04278 ZnMc_MMP Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate specification, cell migration, tissue repair, tumorigenesis, gain or loss of tissue-specific functions, and apoptosis. In many instances, they are anchored to cell membranes via trans-membrane domains, and their activity is controlled via TIMPs (tissue inhibitors of metalloproteinases).
Probab=61.89 E-value=3.9 Score=33.58 Aligned_cols=31 Identities=26% Similarity=0.201 Sum_probs=20.1
Q ss_pred CCEEEEcHHHHhcC----CHHHHHHHHHHHHHHHH
Q 024914 162 KPFVVVHTSLVELL----TRKELQAVLAHELGHLK 192 (260)
Q Consensus 162 ~~~Ivi~~~Ll~~L----~~~EL~aVLaHElgHi~ 192 (260)
...|.++..-.-.. ....+..|+.||+||..
T Consensus 85 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~HEiGHaL 119 (157)
T cd04278 85 GGDIHFDDDEQWTLGSDSGGTDLFSVAAHEIGHAL 119 (157)
T ss_pred ceeEEECCCcccccCCCCccchHHHHHHHHhcccc
Confidence 34566665422111 23569999999999987
No 72
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=61.78 E-value=10 Score=38.08 Aligned_cols=48 Identities=25% Similarity=0.406 Sum_probs=30.8
Q ss_pred cEEEEeCCCCceEEeeccCCCCEE-EEcHHHHhcCCHHHHHHHHHHHHHHHHccCh
Q 024914 142 DLYVRQSPVPNAYTLAISGKKPFV-VVHTSLVELLTRKELQAVLAHELGHLKCDHG 196 (260)
Q Consensus 142 ~vyv~~~~~~NAfa~G~~~~~~~I-vi~~~Ll~~L~~~EL~aVLaHElgHi~~~H~ 196 (260)
++.|.... |-+| +-.+|.+ .++..|+. .+.-+.-|||||++|--.|..
T Consensus 256 DllvlPpS----FP~g-GMENPcltF~TpTlla--GDrsl~~vIaHEIAHSWtGNl 304 (613)
T KOG1047|consen 256 DLLVLPPS----FPFG-GMENPCLTFVTPTLLA--GDRSLVDVIAHEIAHSWTGNL 304 (613)
T ss_pred eEEEecCC----CCcc-cccCcceeeecchhhc--CCcchhhHHHHHhhhhhcccc
Confidence 56565533 2233 2256665 55666653 667789999999999876644
No 73
>cd06258 Peptidase_M3_like The peptidase M3-like family, also called neurolysin-like family, is part of the "zincins" metallopeptidases, and includes M3, M2 and M32 families of metallopeptidases. The M3 family is subdivided into two subfamilies: the widespread M3A, which comprises a number of high-molecular mass endo- and exopeptidases from bacteria, archaea, protozoa, fungi, plants and animals, and the small M3B, whose members are enzymes primarily from bacteria. Well-known mammalian/eukaryotic M3A endopeptidases are the thimet oligopeptidase (TOP; endopeptidase 3.4.24.15), neurolysin (alias endopeptidase 3.4.24.16), and the mitochondrial intermediate peptidase. The first two are intracellular oligopeptidases, which act only on relatively short substrates of less than 20 amino acid residues, while the latter cleaves N-terminal octapeptides from proteins during their import into the mitochondria. The M3A subfamily also contains several bacterial endopeptidases, collectively called olig
Probab=61.73 E-value=7.9 Score=36.10 Aligned_cols=47 Identities=17% Similarity=0.309 Sum_probs=29.9
Q ss_pred eCCCCceEEeeccC----CCCEEEEcHHHHhc-------CCHHHHHHHHHHHHHHHHcc
Q 024914 147 QSPVPNAYTLAISG----KKPFVVVHTSLVEL-------LTRKELQAVLAHELGHLKCD 194 (260)
Q Consensus 147 ~~~~~NAfa~G~~~----~~~~Ivi~~~Ll~~-------L~~~EL~aVLaHElgHi~~~ 194 (260)
++....|+++++.+ ..|.+.|....-.. ++-+++. .+.||+||..+.
T Consensus 111 ~gK~~~a~~~~~~~~~~~~~~~~~i~~n~~~~~~~~~~ll~~~~v~-tl~HE~GHa~h~ 168 (365)
T cd06258 111 KGKYPHGFCTGLDPGFNRQDKDVRILANFTSPAAPDPVLLGHDDIN-TLFHEFGHAVHF 168 (365)
T ss_pred CCCCCCCeeccccCCCCCCCCeEEEEccCCCCCCCCCCcCCHHHHH-HHHHHHhHHHHH
Confidence 34566888887642 14566665554432 4666765 578999999953
No 74
>cd06456 M3A_DCP_Oligopeptidase_A Peptidase family M3 dipeptidyl carboxypeptidase (DCP; Dcp II; peptidyl dipeptidase; EC 3.4.15.5). This metal-binding M3A family also includes oligopeptidase A (OpdA; EC 3.4.24.70) enzyme. DCP cleaves dipeptides off the C-termini of various peptides and proteins, the smallest substrate being N-blocked tripeptides and unblocked tetrapeptides. DCP from E. coli is inhibited by the anti-hypertensive drug captopril, an inhibitor of the mammalian angiotensin converting enzyme (ACE, also called peptidyl dipeptidase A). Oligopeptidase A (OpdA) may play a specific role in the degradation of signal peptides after they are released from precursor forms of secreted proteins. It can also cleave N-acetyl-L-Ala.
Probab=61.55 E-value=8.1 Score=37.38 Aligned_cols=43 Identities=28% Similarity=0.431 Sum_probs=26.9
Q ss_pred CCceEEeeccCC-------CCEEEEcHHHHh-------cCCHHHHHHHHHHHHHHHHc
Q 024914 150 VPNAYTLAISGK-------KPFVVVHTSLVE-------LLTRKELQAVLAHELGHLKC 193 (260)
Q Consensus 150 ~~NAfa~G~~~~-------~~~Ivi~~~Ll~-------~L~~~EL~aVLaHElgHi~~ 193 (260)
..+|++.++.+. .|++++...+-. .|+-+|+. .|.||+||..+
T Consensus 165 ~~ga~~~~~~~~~~~~~~~~P~~~l~~nf~~~~~~~p~lL~~~~v~-tLfHEfGHalH 221 (422)
T cd06456 165 RGGAWMNNLRSQSKNGLGQKPVAYLVCNFTKPAGGKPALLTHDEVT-TLFHEFGHALH 221 (422)
T ss_pred CCCceeecccccccCCCCCCCEEEEECCCCCCCCCCCCccCHHHHH-HHHHHHHHHHH
Confidence 456777765332 376665443322 24667765 58899999985
No 75
>cd06455 M3A_TOP Peptidase M3 Thimet oligopeptidase (TOP; PZ-peptidase; endo-oligopeptidase A; endopeptidase 24.15; soluble metallo-endopeptidase; EC 3.4.24.15) family also includes neurolysin (endopeptidase 24.16, microsomal endopeptidase, mitochondrial oligopeptidase M, neurotensin endopeptidase, soluble angiotensin II-binding protein, thimet oligopeptidase II) which hydrolyzes oligopeptides such as neurotensin, bradykinin and dynorphin A. TOP and neurolysin are neuropeptidases expressed abundantly in the testis, but also found in the liver, lung and kidney. They are involved in the metabolism of neuropeptides under 20 amino acid residues long and cleave most bioactive peptides at the same sites, but recognize different positions on some naturally occurring and synthetic peptides; they cleave at distinct sites on the 13-residue bioactive peptide neurotensin, which modulates central dopaminergic and cholinergic circuits. TOP has been shown to degrade peptides released by the proteasom
Probab=61.05 E-value=6.9 Score=38.27 Aligned_cols=17 Identities=29% Similarity=0.561 Sum_probs=13.0
Q ss_pred CHHHHHHHHHHHHHHHHc
Q 024914 176 TRKELQAVLAHELGHLKC 193 (260)
Q Consensus 176 ~~~EL~aVLaHElgHi~~ 193 (260)
+-+++ ..|+||+||-.|
T Consensus 260 ~~~~V-~TLfHEfGHalH 276 (472)
T cd06455 260 RHDEV-ETFFHEFGHVIH 276 (472)
T ss_pred CHHHH-HHHHHHHHHHHH
Confidence 45665 468999999985
No 76
>PRK14015 pepN aminopeptidase N; Provisional
Probab=59.12 E-value=12 Score=39.67 Aligned_cols=19 Identities=32% Similarity=0.382 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHccChH
Q 024914 179 ELQAVLAHELGHLKCDHGV 197 (260)
Q Consensus 179 EL~aVLaHElgHi~~~H~~ 197 (260)
.+..|++||++|---|+-+
T Consensus 295 ~i~~vIaHElaHqWFGNlV 313 (875)
T PRK14015 295 RIESVIAHEYFHNWTGNRV 313 (875)
T ss_pred HHHHHHHHHHHHHHHhCcc
Confidence 4789999999998877654
No 77
>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=59.12 E-value=21 Score=37.87 Aligned_cols=64 Identities=19% Similarity=0.192 Sum_probs=36.4
Q ss_pred HHHHHhCCC--CCcEEEEeCCCCceEEeeccCCCCEEEEcHHHHhcC-------CHHHHHHHHHHHHHHHHccChH
Q 024914 131 EAAEILNLE--APDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELL-------TRKELQAVLAHELGHLKCDHGV 197 (260)
Q Consensus 131 ~l~~~l~i~--~p~vyv~~~~~~NAfa~G~~~~~~~Ivi~~~Ll~~L-------~~~EL~aVLaHElgHi~~~H~~ 197 (260)
-..+-++++ .|++=++--|+..+-++= +-+.|......+-.= +...++-|||||++|---|...
T Consensus 269 ~~e~~f~i~yPLpK~D~iavPdf~~GAME---NwGLvtyre~~lL~~~~~ss~~~k~~va~vIaHElAHQWFGNLV 341 (882)
T KOG1046|consen 269 FYEDYFGIPYPLPKLDLVAVPDFSAGAME---NWGLVTYRETALLYDPQTSSSSNKQRVAEVIAHELAHQWFGNLV 341 (882)
T ss_pred HHHHHhCCCCCCccccEEecCCccccchh---cCcceeeeehhhccCCCcCcHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 344455665 465544444443333332 233666666554211 1456999999999998877643
No 78
>cd04271 ZnMc_ADAM_fungal Zinc-dependent metalloprotease, ADAM_fungal subgroup. The adamalysin_like or ADAM (A Disintegrin And Metalloprotease) family of metalloproteases are integral membrane proteases acting on a variety of extracellular targets. They are involved in shedding soluble peptides or proteins from the cell surface. This subfamily contains fungal ADAMs, whose precise function has yet to be determined.
Probab=58.79 E-value=3.3 Score=36.68 Aligned_cols=11 Identities=55% Similarity=0.848 Sum_probs=10.2
Q ss_pred HHHHHHHHHHH
Q 024914 182 AVLAHELGHLK 192 (260)
Q Consensus 182 aVLaHElgHi~ 192 (260)
.++|||+||..
T Consensus 147 ~t~AHElGHnL 157 (228)
T cd04271 147 QVFAHEIGHTF 157 (228)
T ss_pred eehhhhhhhhc
Confidence 59999999998
No 79
>cd00203 ZnMc Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which are involved in vertebrate development and disease.
Probab=58.57 E-value=4.6 Score=32.95 Aligned_cols=16 Identities=50% Similarity=0.623 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 024914 177 RKELQAVLAHELGHLK 192 (260)
Q Consensus 177 ~~EL~aVLaHElgHi~ 192 (260)
..+...+++||+||..
T Consensus 93 ~~~~~~~~~HElGH~L 108 (167)
T cd00203 93 TKEGAQTIAHELGHAL 108 (167)
T ss_pred cccchhhHHHHHHHHh
Confidence 3578899999999998
No 80
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=57.26 E-value=6.4 Score=37.12 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=25.8
Q ss_pred cHHHHhcC---CHHHHHHHHHHHHHHHH---ccChHHHH
Q 024914 168 HTSLVELL---TRKELQAVLAHELGHLK---CDHGVWLT 200 (260)
Q Consensus 168 ~~~Ll~~L---~~~EL~aVLaHElgHi~---~~H~~~~~ 200 (260)
.+++++.+ ++.||..+|=||++|-. .+|+..|=
T Consensus 150 ~DPlLSt~l~~~~~~LA~LIfHELaHq~~Yv~~dt~FNE 188 (337)
T PF10023_consen 150 DDPLLSTMLRYPDGELARLIFHELAHQTLYVKGDTAFNE 188 (337)
T ss_pred CCcccccccCCCchHHHHHHHHHHhhceeecCCCchhhH
Confidence 55666654 78999999999999965 67877664
No 81
>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs. Metalloproteases secreted by the salivary glands of arthropods.
Probab=56.90 E-value=6.9 Score=34.06 Aligned_cols=14 Identities=36% Similarity=0.349 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHH
Q 024914 179 ELQAVLAHELGHLK 192 (260)
Q Consensus 179 EL~aVLaHElgHi~ 192 (260)
....++|||+||..
T Consensus 144 ~~~~~~AHElGH~l 157 (220)
T cd04272 144 YGVYTMTHELAHLL 157 (220)
T ss_pred ccHHHHHHHHHHHh
Confidence 44799999999998
No 82
>PF13583 Reprolysin_4: Metallo-peptidase family M12B Reprolysin-like
Probab=56.89 E-value=5.8 Score=34.48 Aligned_cols=16 Identities=38% Similarity=0.584 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHc-cChH
Q 024914 182 AVLAHELGHLKC-DHGV 197 (260)
Q Consensus 182 aVLaHElgHi~~-~H~~ 197 (260)
-+++||+||... +|..
T Consensus 139 ~~~aHEiGH~lGl~H~~ 155 (206)
T PF13583_consen 139 QTFAHEIGHNLGLRHDF 155 (206)
T ss_pred hHHHHHHHHHhcCCCCc
Confidence 459999999983 4443
No 83
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=56.70 E-value=38 Score=24.99 Aligned_cols=55 Identities=22% Similarity=0.246 Sum_probs=31.4
Q ss_pred ChHHHHHHH----HHHHHHhCCCCC---cEEEEeCCCCceEEeeccCCCCEEEEcHHHHhcCCHHHHHHHHH
Q 024914 121 QLPELHQLM----TEAAEILNLEAP---DLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLA 185 (260)
Q Consensus 121 ~~p~L~~~v----~~l~~~l~i~~p---~vyv~~~~~~NAfa~G~~~~~~~Ivi~~~Ll~~L~~~EL~aVLa 185 (260)
.+|...+.+ +..++.+|+..| ++.|.++..-+- +++|+..=-..++++||.+|-|
T Consensus 15 ~Dp~Fr~~Ll~DPraaL~e~G~~~P~~~~i~VvE~t~~~~----------~lVlP~~P~~~lse~~L~~vag 76 (77)
T TIGR03793 15 EDEAFKQALLTNPKEALEREGVQVPAEVEVKVVEESPTVL----------YLVLPVNPDIELTDEQLDAVAG 76 (77)
T ss_pred cCHHHHHHHHHCHHHHHHHhCCCCCCceEEEEEEcCCCeE----------EEEecCCCCCCCCHHHHHHhhC
Confidence 355555544 556667798755 566776543222 2333211111799999999854
No 84
>PF02074 Peptidase_M32: Carboxypeptidase Taq (M32) metallopeptidase; InterPro: IPR001333 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M32 (carboxypeptidase Taq family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. Carboxypeptidase Taq is a zinc-containing thermostable metallopeptidase. It was originally discovered and purified from Thermus aquaticus; optimal enzymatic activity occurs at 80 celcius. Although very little is known about this enzyme, it is thought either to be associated with a membrane or to be particle bound.; GO: 0004181 metallocarboxypeptidase activity, 0006508 proteolysis; PDB: 1K9X_A 1KA4_A 1KA2_A 3DWC_A 1WGZ_A 3HQ2_A 3HOA_B.
Probab=56.60 E-value=45 Score=33.11 Aligned_cols=63 Identities=22% Similarity=0.158 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhCCCCCcEEEEeCCCCceEEeeccCCCCEEEEcHHHHhcCCHHHHHHHHHHHHHHHHc
Q 024914 126 HQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKC 193 (260)
Q Consensus 126 ~~~v~~l~~~l~i~~p~vyv~~~~~~NAfa~G~~~~~~~Ivi~~~Ll~~L~~~EL~aVLaHElgHi~~ 193 (260)
.+.-.++++.+|++...-.+-.+..| |++|+++ .-|-||+..-+.--..-|-+ ..||.||-..
T Consensus 210 ~~~~~~~~~~~G~d~~~grld~s~HP--Ft~~~~~--~DvRiTTry~e~d~~~~l~s-~iHE~GHalY 272 (494)
T PF02074_consen 210 KAFSRELLEYLGFDFDRGRLDESAHP--FTTGFGP--NDVRITTRYDEDDFLSALFS-TIHETGHALY 272 (494)
T ss_dssp HHHHHHHHHHHT--GCGEEEEE-SS---EEEEEET--TEEEEEE--BTTBTHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCccceEEecCCCC--CCCCCCC--CceeeecccccccHHHHHHH-HHHHHHHHHH
Confidence 45666788889998766666555554 6766543 36888888665433334444 3499999874
No 85
>KOG3624 consensus M13 family peptidase [Amino acid transport and metabolism]
Probab=52.93 E-value=11 Score=38.63 Aligned_cols=47 Identities=28% Similarity=0.311 Sum_probs=32.4
Q ss_pred eCCCCceEEeeccCCCCEEEEcHHHHhc----------CCHHHHHHHHHHHHHHHHccCh
Q 024914 147 QSPVPNAYTLAISGKKPFVVVHTSLVEL----------LTRKELQAVLAHELGHLKCDHG 196 (260)
Q Consensus 147 ~~~~~NAfa~G~~~~~~~Ivi~~~Ll~~----------L~~~EL~aVLaHElgHi~~~H~ 196 (260)
.....|||-.. .+..|+++.++++. ++-.-+-+|||||++|---.++
T Consensus 478 ~~~~~na~Y~~---~~N~i~~pa~ilq~P~f~~~~P~~~nyg~iG~vigHEl~H~FD~~G 534 (687)
T KOG3624|consen 478 SPAQVNAFYSP---EKNEIVFPAGLLQPPFFDLSYPDYLNYGGIGFVIGHELTHGFDDQG 534 (687)
T ss_pred ccceeeccccC---CCceEEEehhcccCCCCCcccchhhhhHHHHHHHHHHHhhcccccc
Confidence 33456776432 34578999999874 3345688999999999764443
No 86
>smart00235 ZnMc Zinc-dependent metalloprotease. Neutral zinc metallopeptidases. This alignment represents a subset of known subfamilies. Highest similarity occurs in the HExxH zinc-binding site/ active site.
Probab=51.65 E-value=8.1 Score=30.84 Aligned_cols=12 Identities=58% Similarity=0.778 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHH
Q 024914 181 QAVLAHELGHLK 192 (260)
Q Consensus 181 ~aVLaHElgHi~ 192 (260)
.+|+.||+||..
T Consensus 87 ~~~~~HEigHaL 98 (140)
T smart00235 87 TGVAAHELGHAL 98 (140)
T ss_pred cccHHHHHHHHh
Confidence 359999999997
No 87
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=49.00 E-value=10 Score=38.40 Aligned_cols=34 Identities=26% Similarity=0.353 Sum_probs=21.8
Q ss_pred CCEE-EEcHHHHhcCCHHHHHHHHHHHHHHHHccChH
Q 024914 162 KPFV-VVHTSLVELLTRKELQAVLAHELGHLKCDHGV 197 (260)
Q Consensus 162 ~~~I-vi~~~Ll~~L~~~EL~aVLaHElgHi~~~H~~ 197 (260)
++.+ ..+..++. .+.+...|+|||++|---|+.+
T Consensus 262 N~~ltf~~~~ll~--~d~s~~~viaHElAHqWfGNlV 296 (601)
T TIGR02411 262 NPNLTFATPTLIA--GDRSNVDVIAHELAHSWSGNLV 296 (601)
T ss_pred cccceeecccccc--CChhhhhhHHHHHHhhccCcee
Confidence 3434 34444442 3445678999999999877643
No 88
>KOG3314 consensus Ku70-binding protein [Replication, recombination and repair]
Probab=46.79 E-value=64 Score=27.57 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=24.3
Q ss_pred eccCCCCEEEEcHHHHhcCCHHHHHHHHHHHHHHHHccCh
Q 024914 157 AISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHG 196 (260)
Q Consensus 157 G~~~~~~~Ivi~~~Ll~~L~~~EL~aVLaHElgHi~~~H~ 196 (260)
|+.++++ |++-..-| -+.+++.-|+.|||-|.--.|-
T Consensus 71 Gy~~~~g-IvlCqN~l--~~q~h~n~vv~HElIH~fDd~r 107 (194)
T KOG3314|consen 71 GYTPGRG-IVLCQNRL--TIQDHVNQVVIHELIHAFDDCR 107 (194)
T ss_pred CccCCCc-eEEecccc--chHHHHHHHHHHHHHHHHHhhh
Confidence 4444455 44444322 2678999999999999985443
No 89
>cd04327 ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MMP_like sub-family 3. A group of bacterial and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=46.05 E-value=16 Score=31.33 Aligned_cols=16 Identities=38% Similarity=0.573 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHc
Q 024914 178 KELQAVLAHELGHLKC 193 (260)
Q Consensus 178 ~EL~aVLaHElgHi~~ 193 (260)
.+..+++.||+||...
T Consensus 90 ~~~~~~i~HElgHaLG 105 (198)
T cd04327 90 PEFSRVVLHEFGHALG 105 (198)
T ss_pred hhHHHHHHHHHHHHhc
Confidence 4667899999999983
No 90
>cd04276 ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=46.02 E-value=15 Score=31.97 Aligned_cols=31 Identities=26% Similarity=0.342 Sum_probs=23.0
Q ss_pred CEEEEcHHHHhcCC-------HHHHHHHHHHHHHHHHc
Q 024914 163 PFVVVHTSLVELLT-------RKELQAVLAHELGHLKC 193 (260)
Q Consensus 163 ~~Ivi~~~Ll~~L~-------~~EL~aVLaHElgHi~~ 193 (260)
..|.+..+.+.... .+-++.+++||+||...
T Consensus 92 a~V~l~~~~~~~~~~~~~~~~~~~~~~~~~he~gh~lG 129 (197)
T cd04276 92 ADVILYSGFLRQDQLWYEDLLAASLRYLLAHEVGHTLG 129 (197)
T ss_pred EEEEeCchhhccchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46778888775432 24589999999999873
No 91
>PF02163 Peptidase_M50: Peptidase family M50; InterPro: IPR008915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains metallopeptidases belonging to MEROPS peptidase family M50 (S2P protease family, clan MM). Members of the M50 metallopeptidase family include: mammalian sterol-regulatory element binding protein (SREBP) site 2 protease, Escherichia coli protease EcfE, stage IV sporulation protein FB and various hypothetical bacterial and eukaryotic homologues. A number of proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity.; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3B4R_A 3ID4_A 3ID2_A 2ZPL_B 3ID1_A 2ZPM_A 3ID3_B 2HGA_A.
Probab=45.56 E-value=15 Score=30.90 Aligned_cols=13 Identities=46% Similarity=0.764 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHH
Q 024914 180 LQAVLAHELGHLK 192 (260)
Q Consensus 180 L~aVLaHElgHi~ 192 (260)
+-+++.||+||..
T Consensus 7 ~i~i~~HE~gH~~ 19 (192)
T PF02163_consen 7 LISIVLHELGHAL 19 (192)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccccccccccccc
Confidence 3578999999987
No 92
>cd04277 ZnMc_serralysin_like Zinc-dependent metalloprotease, serralysin_like subfamily. Serralysins and related proteases are important virulence factors in pathogenic bacteria. They may be secreted into the medium via a mechanism found in gram-negative bacteria, that does not require n-terminal signal sequences which are cleaved after the transmembrane translocation. A calcium-binding domain c-terminal to the metalloprotease domain, which contains multiple tandem repeats of a nine-residue motif including the pattern GGxGxD, and which forms a parallel beta roll may be involved in the translocation mechanism and/or substrate binding. Serralysin family members may have a broad spectrum of substrates each, including host immunoglobulins, complement proteins, cell matrix and cytoskeletal proteins, as well as antimicrobial peptides.
Probab=45.04 E-value=15 Score=30.92 Aligned_cols=35 Identities=17% Similarity=0.069 Sum_probs=23.3
Q ss_pred CEEEEcHHHHhcC--CHHHHHHHHHHHHHHHHc-cChH
Q 024914 163 PFVVVHTSLVELL--TRKELQAVLAHELGHLKC-DHGV 197 (260)
Q Consensus 163 ~~Ivi~~~Ll~~L--~~~EL~aVLaHElgHi~~-~H~~ 197 (260)
..|.+...-.... .......++.||+||... +|+.
T Consensus 94 g~i~~~~~~~~~~~~~g~~~~~t~~HEiGHaLGL~H~~ 131 (186)
T cd04277 94 GDIWFNSSYDTNSDSPGSYGYQTIIHEIGHALGLEHPG 131 (186)
T ss_pred ceeEEecCcccccCCCChhhHHHHHHHHHHHhcCCCCC
Confidence 4677776544321 235678999999999983 4543
No 93
>TIGR02421 QEGLA conserved hypothetical protein. Members of this family include a possible metal-binding motif HEXXXH and, nearby, a perfectly conserved motif QEGLA. All members belong to the Proteobacteria, including Agrobacterium tumefaciens and several species of Vibrio and Pseudomonas, and are found in only one copy per chromosome (Vibrio vulnificus, with two chromosomes, has two). The function is unknown.
Probab=42.59 E-value=44 Score=31.92 Aligned_cols=64 Identities=17% Similarity=0.277 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHhCCCC-CcEEEEeCCCCceEEeeccCCCCEEEEcHHHHhcCCHHHHHHHHHHHHH-HHH
Q 024914 122 LPELHQLMTEAAEILNLEA-PDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELG-HLK 192 (260)
Q Consensus 122 ~p~L~~~v~~l~~~l~i~~-p~vyv~~~~~~NAfa~G~~~~~~~Ivi~~~Ll~~L~~~EL~aVLaHElg-Hi~ 192 (260)
..+..+.+++.++..+... .+|.+.++-..+|.+.| + .|.|+++. .+++.++.+++-||+| |+.
T Consensus 136 A~~a~~~~~~~~~~y~~~~~~~V~~sd~l~a~a~v~~---~--~l~i~~~a--~fs~~~l~~L~~HEigvH~~ 201 (366)
T TIGR02421 136 ATEAAEILQQRLEDYFGEETIRVTLSDDLPAGAMVSG---D--KLKLNSDA--MFSERDLEALIHHEIGVHLL 201 (366)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEECcchhHHHhccC---C--eEEECCCC--CcCHHHHHHHHHHhHHhhhh
Confidence 4467778888888777652 23333333334666543 2 68888873 3699999999999998 443
No 94
>PF01400 Astacin: Astacin (Peptidase family M12A) This Prosite motif covers only the active site.; InterPro: IPR001506 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12A (astacin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The astacin () family of metalloendopeptidases encompasses a range of proteins found in hydra to humans, in mature and developmental systems []. Their functions include activation of growth factors, degradation of polypeptides, and processing of extracellular proteins []. The proteins are synthesised with N-terminal signal and pro-enzyme sequences, and many contain multiple domains C-terminal to the protease domain. They are either secreted from cells, or are associated with the plasma membrane. The astacin molecule adopts a kidney shape, with a deep active-site cleft between its N- and C-terminal domains []. The zinc ion, which lies at the bottom of the cleft, exhibits a unique penta-coordinated mode of binding, involving 3 histidine residues, a tyrosine and a water molecule (which is also bound to the carboxylate side chain of Glu93) []. The N-terminal domain comprises 2 alpha-helices and a 5-stranded beta-sheet. The overall topology of this domain is shared by the archetypal zinc-endopeptidase thermolysin. Astacin protease domains also share common features with serralysins, matrix metalloendopeptidases, and snake venom proteases; they cleave peptide bonds in polypeptides such as insulin B chain and bradykinin, and in proteins such as casein and gelatin; and they have arylamidase activity [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3LQB_A 3EDH_A 3EDG_A 3EDI_A 1IAE_A 1IAB_A 1IAA_A 1AST_A 1IAC_A 1QJJ_A ....
Probab=41.75 E-value=48 Score=28.27 Aligned_cols=62 Identities=16% Similarity=0.142 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhCCC------CCcEEE-EeCCCCceEEeeccCCCCEEEEcHHHHhcCCHHHHHHHHHHHHHHHH
Q 024914 124 ELHQLMTEAAEILNLE------APDLYV-RQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLK 192 (260)
Q Consensus 124 ~L~~~v~~l~~~l~i~------~p~vyv-~~~~~~NAfa~G~~~~~~~Ivi~~~Ll~~L~~~EL~aVLaHElgHi~ 192 (260)
.+.+.+++..+...++ ....|+ .......--..|..+....|.|..+ +. -.+++.||++|..
T Consensus 23 ~I~~Am~~~e~~TcI~F~~~~~~~~~~i~~~~~~gC~S~vG~~~g~q~i~l~~~----c~---~~~~i~HEl~HaL 91 (191)
T PF01400_consen 23 RIRKAMDEWEKNTCIRFVERTENEDDYISFSNGSGCWSYVGRQGGEQTINLGDG----CF---SVGTILHELGHAL 91 (191)
T ss_dssp HHHHHHHHHHHHSSEEEEE-SSSSSSEEEEESSSSEEEESS--SSEEEEEE-TT----C----SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCceEEEeecCccccchhhhcCcceeEEecce----eC---CccchHHHHHHHH
Confidence 4555566655554442 111233 2333333333465444556666633 21 3569999999987
No 95
>cd04273 ZnMc_ADAMTS_like Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that combine ADAM-like metalloproteinases with thrombospondin type-1 repeats. ADAMTS (a disintegrin and metalloproteinase with thrombospondin motifs) proteinases are inhibited by TIMPs (tissue inhibitors of metalloproteinases), and they play roles in coagulation, angiogenesis, development and progression of arthritis. They hydrolyze the von Willebrand factor precursor and various components of the extracellular matrix.
Probab=41.54 E-value=4.9 Score=34.66 Aligned_cols=13 Identities=46% Similarity=0.680 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHH
Q 024914 180 LQAVLAHELGHLK 192 (260)
Q Consensus 180 L~aVLaHElgHi~ 192 (260)
...++|||+||..
T Consensus 140 ~a~~~aHElGH~L 152 (207)
T cd04273 140 SAFTIAHELGHVL 152 (207)
T ss_pred eEEeeeeechhhc
Confidence 4689999999988
No 96
>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with PF00412 from PFAM.
Probab=39.99 E-value=18 Score=31.89 Aligned_cols=21 Identities=38% Similarity=0.240 Sum_probs=17.3
Q ss_pred hcCCHHHHHHHHHHHHHHHHc
Q 024914 173 ELLTRKELQAVLAHELGHLKC 193 (260)
Q Consensus 173 ~~L~~~EL~aVLaHElgHi~~ 193 (260)
..|+.--.-+|||||+.|..-
T Consensus 86 ~GLPrll~gsiLAHE~mHa~L 106 (212)
T PF12315_consen 86 YGLPRLLTGSILAHELMHAWL 106 (212)
T ss_pred CCCCHHHHhhHHHHHHHHHHh
Confidence 356777889999999999864
No 97
>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens. W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen
Probab=39.90 E-value=94 Score=22.26 Aligned_cols=52 Identities=19% Similarity=0.173 Sum_probs=35.7
Q ss_pred HHHHHHHHHhCCCCCcEEEEeCCCCceEEeeccCCCCEEEEcHHHHhcCCHHHHHHHHH
Q 024914 127 QLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLA 185 (260)
Q Consensus 127 ~~v~~l~~~l~i~~p~vyv~~~~~~NAfa~G~~~~~~~Ivi~~~Ll~~L~~~EL~aVLa 185 (260)
+.++.+.+.++.+ .+.+.. +++.|..+..|.+.|+......++++.+..++.
T Consensus 19 ~l~~~l~~~L~~~--~v~l~~-----~~ClG~C~~gP~v~V~~~~~~~~t~~~i~~~~~ 70 (72)
T cd03082 19 ELLAALEAGLGPE--GVRVVR-----APCVGRCERAPAALVGQRPVDGATPAAVAAAVE 70 (72)
T ss_pred HHHHHHHHHhCCC--eEEEEe-----cCcCCccCCCCeEEECCEEeCCcCHHHHHHHHh
Confidence 3444444555544 343333 346777778899999999999999998887653
No 98
>PF04293 SpoVR: SpoVR like protein; InterPro: IPR007390 One of the family members P37875 from SWISSPROT is Bacillus subtilis stage V sporulation protein R, which is involved in spore cortex formation []. Little is known about cortex biosynthesis, except that it depends on several sigma E controlled genes, including spoVR [].
Probab=39.20 E-value=32 Score=33.54 Aligned_cols=70 Identities=23% Similarity=0.271 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHhCCC-CC-cEEEEeCCCCce-EEe-ecc----------------------CCC--CEEEEcHH----
Q 024914 123 PELHQLMTEAAEILNLE-AP-DLYVRQSPVPNA-YTL-AIS----------------------GKK--PFVVVHTS---- 170 (260)
Q Consensus 123 p~L~~~v~~l~~~l~i~-~p-~vyv~~~~~~NA-fa~-G~~----------------------~~~--~~Ivi~~~---- 170 (260)
.+..+.+.++|+.+|++ -| .+-|++...++. .+. |++ ..+ .=+||++.
T Consensus 9 e~~~~~i~~~A~~~GLd~yp~~fEiv~~e~m~~~~ay~GmP~rY~HWsfGk~y~~~k~~Y~~gl~~laYE~VINs~Pc~A 88 (426)
T PF04293_consen 9 ERIIEEIEEIARELGLDFYPVQFEIVPAEQMYEAYAYVGMPTRYPHWSFGKEYERMKKQYRYGLSKLAYEMVINSNPCIA 88 (426)
T ss_pred HHHHHHHHHHHHHcCCCCCCceEEEeCHHHHHHHHHhcCCCCCCchhhccHHHHHHHHHHHccCCCcceEEEECCCchhh
Confidence 34566777788888887 34 344444333221 111 211 112 13677654
Q ss_pred -HHhcCCHHHHHHHHHHHHHHHH
Q 024914 171 -LVELLTRKELQAVLAHELGHLK 192 (260)
Q Consensus 171 -Ll~~L~~~EL~aVLaHElgHi~ 192 (260)
|++.-+.-+-..|+||=+||.-
T Consensus 89 yL~e~Nt~~~q~lViAHV~gH~d 111 (426)
T PF04293_consen 89 YLMESNTLAMQKLVIAHVYGHND 111 (426)
T ss_pred hHhccCcHHHHHHHHHHHHHHHH
Confidence 5666666777789999999964
No 99
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=38.69 E-value=19 Score=33.63 Aligned_cols=18 Identities=33% Similarity=0.418 Sum_probs=15.3
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 024914 175 LTRKELQAVLAHELGHLK 192 (260)
Q Consensus 175 L~~~EL~aVLaHElgHi~ 192 (260)
+.+-++-+.++||+||.+
T Consensus 191 ~p~~~~P~T~~HElAHq~ 208 (318)
T PF12725_consen 191 LPPYSLPFTICHELAHQL 208 (318)
T ss_pred CCcccccHHHHHHHHHHh
Confidence 455678899999999998
No 100
>PF08014 DUF1704: Domain of unknown function (DUF1704); InterPro: IPR012548 This family contains many hypothetical proteins.
Probab=38.43 E-value=60 Score=30.77 Aligned_cols=67 Identities=15% Similarity=0.185 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHhCCC---CCcEEEEeCCCCceEEeeccCCCCEEEEcHHHHhcCCHHHHHHHHHHHH-HHHHccC
Q 024914 122 LPELHQLMTEAAEILNLE---APDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHEL-GHLKCDH 195 (260)
Q Consensus 122 ~p~L~~~v~~l~~~l~i~---~p~vyv~~~~~~NAfa~G~~~~~~~Ivi~~~Ll~~L~~~EL~aVLaHEl-gHi~~~H 195 (260)
..++...+++.++...-. ...|.+.++-..+|.+.+ + .|.|+.+. .+++.++.+++-||+ .|+....
T Consensus 111 a~~~~~~~~~~~~~y~~~~~~~~~V~~sddl~a~A~v~~---~--~l~I~~~~--~fs~~~l~~L~~HEigvH~lt~~ 181 (349)
T PF08014_consen 111 AEEAVSRLQERLKKYFGKEGFEVKVELSDDLLARAMVSG---D--RLKINKNA--MFSERDLEALLHHEIGVHLLTTL 181 (349)
T ss_pred HHHHHHHHHHHHHHHhcccCceEEEEEcCCcchhhcccC---C--eeEEcCCC--CcCHHHHHHHHHHhhhhhhcccc
Confidence 335666777766665211 223444444456776543 2 38888863 269999999999999 5776543
No 101
>cd05709 S2P-M50 Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of this family use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. The domain core structure appears to contain at least three transmembrane helices with a catalytic zinc atom coordinated by three conserved residues contained within the consensus sequence HExxH, together with a conserved aspartate residue. The S2P/M50 family of RIP proteases is widely distributed; in eukaryotic cells, they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum (ER) stress responses. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of sterol regulatory element-bindin
Probab=37.48 E-value=23 Score=29.50 Aligned_cols=12 Identities=50% Similarity=0.675 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHH
Q 024914 181 QAVLAHELGHLK 192 (260)
Q Consensus 181 ~aVLaHElgHi~ 192 (260)
-.|+.||+||..
T Consensus 9 i~i~iHE~gH~~ 20 (180)
T cd05709 9 ISVTVHELGHAL 20 (180)
T ss_pred HHHHHHHHHHHH
Confidence 468999999987
No 102
>cd06161 S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB.
Probab=37.28 E-value=23 Score=30.69 Aligned_cols=13 Identities=54% Similarity=0.784 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHH
Q 024914 180 LQAVLAHELGHLK 192 (260)
Q Consensus 180 L~aVLaHElgHi~ 192 (260)
+-.|+-||+||..
T Consensus 38 ~~~v~iHElgH~~ 50 (208)
T cd06161 38 FLSVLLHELGHAL 50 (208)
T ss_pred HHHHHHHHHHHHH
Confidence 5679999999986
No 103
>PRK13267 archaemetzincin-like protein; Reviewed
Probab=36.94 E-value=96 Score=26.50 Aligned_cols=14 Identities=36% Similarity=0.634 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHH
Q 024914 179 ELQAVLAHELGHLK 192 (260)
Q Consensus 179 EL~aVLaHElgHi~ 192 (260)
-+.-...||+||..
T Consensus 124 R~~k~~~HElGH~l 137 (179)
T PRK13267 124 RVRKEVTHELGHTL 137 (179)
T ss_pred HHHHHHHHHHHHHc
Confidence 34555899999995
No 104
>cd06163 S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA.
Probab=35.63 E-value=23 Score=30.31 Aligned_cols=11 Identities=45% Similarity=0.911 Sum_probs=9.5
Q ss_pred HHHHHHHHHHH
Q 024914 182 AVLAHELGHLK 192 (260)
Q Consensus 182 aVLaHElgHi~ 192 (260)
.|+-||+||..
T Consensus 11 ~v~iHElGH~~ 21 (182)
T cd06163 11 LIFVHELGHFL 21 (182)
T ss_pred HHHHHHHHHHH
Confidence 57899999986
No 105
>COG3930 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.48 E-value=73 Score=30.50 Aligned_cols=47 Identities=17% Similarity=0.313 Sum_probs=31.3
Q ss_pred cEEEEeCCCCceEEeeccCCCCEEEEcHHHHhcCCHHHHHHHHHHHHHH
Q 024914 142 DLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGH 190 (260)
Q Consensus 142 ~vyv~~~~~~NAfa~G~~~~~~~Ivi~~~Ll~~L~~~EL~aVLaHElgH 190 (260)
++|..+.+..-|-+.--...-|.+.|+...+ ++++++++++.||+|=
T Consensus 210 ~~~~~~~~g~~Ara~v~~d~pp~lli~~~t~--~~~~~V~~Ll~HEigV 256 (434)
T COG3930 210 RVYESDTAGFVARAEVRDDLPPTLLIRRDTL--MEERRVRALLSHEIGV 256 (434)
T ss_pred eeeecCccchhhhHhhcCCCCcceeehhhhh--cCHHHHHHHHHhhhhe
Confidence 4666665555554432122335677877765 6999999999999983
No 106
>PRK10911 oligopeptidase A; Provisional
Probab=35.19 E-value=29 Score=35.72 Aligned_cols=18 Identities=39% Similarity=0.504 Sum_probs=14.5
Q ss_pred CCHHHHHHHHHHHHHHHHc
Q 024914 175 LTRKELQAVLAHELGHLKC 193 (260)
Q Consensus 175 L~~~EL~aVLaHElgHi~~ 193 (260)
|+-+|+. .|.||+||..|
T Consensus 459 L~~~~v~-tlfHEfGHalH 476 (680)
T PRK10911 459 FTHDEVI-TLFHEFGHGLH 476 (680)
T ss_pred cCHHHHH-HHHHHHhHHHH
Confidence 4667876 78999999985
No 107
>TIGR03296 M6dom_TIGR03296 M6 family metalloprotease domain. This model describes a metalloproteinase domain, with a characteristic HExxH motif. Examples of this domain are found in proteins in the family of immune inhibitor A, which cleaves antibacterial peptides, and in other, only distantly related proteases. This model is built to be broader and more inclusive than Pfam model pfam05547.
Probab=34.94 E-value=8.9 Score=35.03 Aligned_cols=13 Identities=54% Similarity=0.659 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHc
Q 024914 181 QAVLAHELGHLKC 193 (260)
Q Consensus 181 ~aVLaHElgHi~~ 193 (260)
.+|++||+||...
T Consensus 166 igv~~HE~gH~lG 178 (286)
T TIGR03296 166 VGVIAHELGHDLG 178 (286)
T ss_pred eeeeehhhhcccC
Confidence 5899999999664
No 108
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=34.13 E-value=51 Score=34.95 Aligned_cols=70 Identities=20% Similarity=0.161 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhCCCC--CcEEEEeCCCCceEEeeccCCCCEEEEcHHHH-h------cCCHHHHHHHHHHHHHHHHcc
Q 024914 124 ELHQLMTEAAEILNLEA--PDLYVRQSPVPNAYTLAISGKKPFVVVHTSLV-E------LLTRKELQAVLAHELGHLKCD 194 (260)
Q Consensus 124 ~L~~~v~~l~~~l~i~~--p~vyv~~~~~~NAfa~G~~~~~~~Ivi~~~Ll-~------~L~~~EL~aVLaHElgHi~~~ 194 (260)
...+.++-.-+..|++. |. -++.-+..|+-++ .+...+.+++..+ . .-+-+..+.|++||++|---|
T Consensus 246 ~~~~~~~~~e~~fg~~y~l~~-~~V~v~~f~~GaM---EN~Gl~tf~~~~ll~~~~~at~~~~~~~~~viaHElaHqWfG 321 (859)
T COG0308 246 ETKRSIEFYEEYFGLPYALPI-DIVAVPDFSAGAM---ENWGLVTFREKYLLADPETATDSDYENVEEVIAHELAHQWFG 321 (859)
T ss_pred HHHHHhhhHHHhcCCCCCCcc-cEEeccCCCCccc---cccceeEEeeeEEeeCcccchhHHHHHHHHHHHHHHhhhccc
Confidence 34455555555677763 43 2333333343332 1223444444422 1 111255777999999999887
Q ss_pred ChH
Q 024914 195 HGV 197 (260)
Q Consensus 195 H~~ 197 (260)
+-+
T Consensus 322 nlV 324 (859)
T COG0308 322 NLV 324 (859)
T ss_pred cee
Confidence 754
No 109
>cd06164 S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed tha
Probab=34.02 E-value=28 Score=30.76 Aligned_cols=13 Identities=54% Similarity=0.797 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHH
Q 024914 180 LQAVLAHELGHLK 192 (260)
Q Consensus 180 L~aVLaHElgHi~ 192 (260)
.-.|+-||+||..
T Consensus 53 ~~~v~iHElgH~~ 65 (227)
T cd06164 53 FASVLLHELGHSL 65 (227)
T ss_pred HHHHHHHHHHHHH
Confidence 5678999999986
No 110
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=32.73 E-value=1.6e+02 Score=22.43 Aligned_cols=68 Identities=13% Similarity=0.120 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHhCCCCCcEEEEeCCCCceEEeeccCCCCEEEEc--HH--HHhcCCHHHHHHHHHHHHHHHHccChH
Q 024914 122 LPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVH--TS--LVELLTRKELQAVLAHELGHLKCDHGV 197 (260)
Q Consensus 122 ~p~L~~~v~~l~~~l~i~~p~vyv~~~~~~NAfa~G~~~~~~~Ivi~--~~--Ll~~L~~~EL~aVLaHElgHi~~~H~~ 197 (260)
..++++.+++..++.|+ ++-+.... +.|+....|.|.|. .+ +....+++....++..-+.- ...|+.
T Consensus 16 A~~V~~al~~ei~~~gl---~v~v~~tG-----C~G~C~~ePlV~V~~p~g~v~Y~~V~~edv~~Iv~~~~~~-~~~h~~ 86 (92)
T cd03063 16 ADEVAEAIEAEAAARGL---AATIVRNG-----SRGMYWLEPLVEVETPGGRVAYGPVTPADVASLLDAGALE-GGEHPL 86 (92)
T ss_pred HHHHHHHHHHHHHHcCC---eEEEEEec-----CceecCCCCEEEEEeCCCcEEEEeCCHHHHHHHHHHHhhc-CCcCch
Confidence 34688888888888787 56666543 34556678999884 33 45567999988888765553 256776
Q ss_pred H
Q 024914 198 W 198 (260)
Q Consensus 198 ~ 198 (260)
+
T Consensus 87 ~ 87 (92)
T cd03063 87 C 87 (92)
T ss_pred h
Confidence 5
No 111
>PF09471 Peptidase_M64: IgA Peptidase M64; InterPro: IPR019026 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This is a family of highly selective metallo-endopeptidases belonging to the MEROPS peptidase family M64 (IgA peptidase, clan MA). The primary structure of the Clostridium ramosum IgA peptidase shows no significant overall similarity to any other known metallo-endopeptidase []. ; PDB: 3P1V_A 4DF9_D.
Probab=30.67 E-value=31 Score=31.41 Aligned_cols=15 Identities=33% Similarity=0.600 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHH
Q 024914 178 KELQAVLAHELGHLK 192 (260)
Q Consensus 178 ~EL~aVLaHElgHi~ 192 (260)
+....|+.||+||--
T Consensus 214 ~~~~~v~vHE~GHsf 228 (264)
T PF09471_consen 214 PSFKQVVVHEFGHSF 228 (264)
T ss_dssp TTHHHHHHHHHHHHT
T ss_pred ccccceeeeeccccc
Confidence 368889999999954
No 112
>PF01457 Peptidase_M8: Leishmanolysin This Prosite motif covers only the active site. This is family M8 in the peptidase classification. ; InterPro: IPR001577 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M8 (leishmanolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Leishmanolysin is an enzyme found in the eukaryotes including Leishmania and related parasitic protozoa []. The endopeptidase is the most abundant protein on the cell surface during the promastigote stage of the parasite, and is attached to the membrane by a glycosylphosphatidylinositol anchor []. In the amastigote form, the parasite lives in lysosomes of host macrophages, producing a form of the protease that has an acidic pH optimum []. This differs from most other metalloproteases and may be an adaptation to the environment in which the organism survives [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0007155 cell adhesion, 0016020 membrane; PDB: 1LML_A.
Probab=30.34 E-value=48 Score=32.95 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=19.7
Q ss_pred EEEEcHHHHhcCCHHHHHHHHHHHHHHHHccCh
Q 024914 164 FVVVHTSLVELLTRKELQAVLAHELGHLKCDHG 196 (260)
Q Consensus 164 ~Ivi~~~Ll~~L~~~EL~aVLaHElgHi~~~H~ 196 (260)
.|-++...+.....++..-++.||++|...-..
T Consensus 194 ~in~~p~~i~~~~~~~~~~~~~HEi~HaLGFs~ 226 (521)
T PF01457_consen 194 VININPSYIPSFYFQEFFRTVIHEIAHALGFSS 226 (521)
T ss_dssp EEE--GGG---S--HHHHHHHHHHHHHHTT-SH
T ss_pred EEEEchhHccchhhhcccceeeeeeeeeeeecc
Confidence 566666666555567888999999999985443
No 113
>PF06861 BALF1: BALF1 protein; InterPro: IPR010677 Epstein-Barr virus (strain GD1) (HHV-4), a human tumour DNA virus and a prominent member of gamma-herpesviruses, encodes homologues of cellular antiapoptotic viral Bcl-2 proteins BALF1 and BHRF1. They protect the virus from apoptosis in its host cell during virus synthesis [, ]. The virus infects B lymphocytes to establish a latent infection and yield proliferating, growth-transformed B cells in vitro. Bcl-2 genes are essential for the initial evasion of apoptosis which allows it to establish a latent infection or cause cellular transformation, or both []. Bcl-2 family proteins can inhibit or induce programmed cell death in part by counteracting the activity of other BCL-2 family members. BALF1, inhibits the antiapoptotic activity of EBV BHRF1 and of KSBcl-2 in several transfected cell lines. BALF1 fails, however, to inhibit the cellular BCL-2 family member, BCL-x(L). Thus, BALF1 acts as a negative regulator of the survival function of BHRF1, similar to the counterbalance observed between cellular BCL-2 family members [].
Probab=30.27 E-value=35 Score=29.19 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=20.6
Q ss_pred cCCHHHHHHHHHHHHHHHHccChH
Q 024914 174 LLTRKELQAVLAHELGHLKCDHGV 197 (260)
Q Consensus 174 ~L~~~EL~aVLaHElgHi~~~H~~ 197 (260)
..++.|-.++++|++||+..+|-.
T Consensus 126 l~~d~e~~s~v~~~lA~Fy~~~r~ 149 (182)
T PF06861_consen 126 LLNDHENASLVSHALAHFYLRYRR 149 (182)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHH
Confidence 358899999999999999987754
No 114
>cd06160 S2P-M50_like_2 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains.
Probab=29.47 E-value=40 Score=28.84 Aligned_cols=14 Identities=36% Similarity=0.470 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHH
Q 024914 179 ELQAVLAHELGHLK 192 (260)
Q Consensus 179 EL~aVLaHElgHi~ 192 (260)
=+-.+..||+||..
T Consensus 40 l~~~l~iHElgH~~ 53 (183)
T cd06160 40 LLAILGIHEMGHYL 53 (183)
T ss_pred HHHHHHHHHHHHHH
Confidence 35667899999986
No 115
>PF13398 Peptidase_M50B: Peptidase M50B-like
Probab=29.36 E-value=38 Score=29.24 Aligned_cols=15 Identities=40% Similarity=0.547 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHH
Q 024914 178 KELQAVLAHELGHLK 192 (260)
Q Consensus 178 ~EL~aVLaHElgHi~ 192 (260)
-.+-.++.||+||..
T Consensus 20 ~~~l~t~~HE~gHal 34 (200)
T PF13398_consen 20 FRLLVTFVHELGHAL 34 (200)
T ss_pred HHHHHHHHHHHHHHH
Confidence 356679999999986
No 116
>COG4227 Antirestriction protein [DNA replication, recombination, and repair]
Probab=29.10 E-value=32 Score=31.58 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=17.5
Q ss_pred CCHHHHHHHHHHHHHHHHccChH
Q 024914 175 LTRKELQAVLAHELGHLKCDHGV 197 (260)
Q Consensus 175 L~~~EL~aVLaHElgHi~~~H~~ 197 (260)
.+...-.+.+.||+||+.. |..
T Consensus 198 ~da~~yyaTl~HElghwtg-h~~ 219 (316)
T COG4227 198 RDAINYYATLLHELGHWTG-HEA 219 (316)
T ss_pred cchHhHHHHHHHHhccccC-chh
Confidence 3667789999999999984 544
No 117
>PF06262 DUF1025: Possibl zinc metallo-peptidase; InterPro: IPR010428 This is a family of bacterial protein with undetermined function.; PDB: 3E11_A.
Probab=28.90 E-value=54 Score=25.26 Aligned_cols=34 Identities=21% Similarity=0.217 Sum_probs=20.5
Q ss_pred CEEEEcHHHHh-cC-CH----HHHHHHHHHHHHHHHccCh
Q 024914 163 PFVVVHTSLVE-LL-TR----KELQAVLAHELGHLKCDHG 196 (260)
Q Consensus 163 ~~Ivi~~~Ll~-~L-~~----~EL~aVLaHElgHi~~~H~ 196 (260)
..|+|...=++ .. ++ ++++-++-||+||...-+.
T Consensus 50 ~rI~lyR~pl~~~~~~~~eL~~~I~~tlvhEiah~fG~~~ 89 (97)
T PF06262_consen 50 DRIVLYRRPLERRARSREELAELIRDTLVHEIAHHFGISD 89 (97)
T ss_dssp EEEEEEHHHHHHT-SSHHHHHHHHHHHHHHHHHHHTT--H
T ss_pred CEEEEehHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 45666655444 44 44 4577788899999875443
No 118
>cd06159 S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group appears to be limited to Archaeal S2P/M50s homologs with additional putative N-terminal transmembrane spanning regions, relative to the core protein, and either one or two PDZ domains present.
Probab=28.89 E-value=36 Score=30.94 Aligned_cols=14 Identities=36% Similarity=0.401 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHH
Q 024914 179 ELQAVLAHELGHLK 192 (260)
Q Consensus 179 EL~aVLaHElgHi~ 192 (260)
=.-+|+.||+||..
T Consensus 117 L~isv~iHElgHa~ 130 (263)
T cd06159 117 LVVGVVVHELSHGI 130 (263)
T ss_pred HHHHHHHHHHHHHH
Confidence 35679999999986
No 119
>PRK11767 SpoVR family protein; Provisional
Probab=28.74 E-value=73 Score=31.72 Aligned_cols=69 Identities=23% Similarity=0.265 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhCCC-CC-cEEEEeCC-CCceEE-------------------------eeccCCCCEEEEcHH-----
Q 024914 124 ELHQLMTEAAEILNLE-AP-DLYVRQSP-VPNAYT-------------------------LAISGKKPFVVVHTS----- 170 (260)
Q Consensus 124 ~L~~~v~~l~~~l~i~-~p-~vyv~~~~-~~NAfa-------------------------~G~~~~~~~Ivi~~~----- 170 (260)
+..+.++++|+.+|++ -| ++-|+... ...+++ .|..+.-.=|||++.
T Consensus 19 ~~~~~I~~iA~~~GLD~yp~~~EIi~~eqml~~~as~GmP~rY~HWsfGk~y~~~~~~Y~~gl~glaYEiVINSnPciAy 98 (498)
T PRK11767 19 RYLDEIERVAKEYGLDTYPNQIEVITAEQMMDAYSSVGMPINYRHWSFGKHFIETEQLYRRGQMGLAYEIVINSNPCIAY 98 (498)
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEECHHHHHHHHHhcCCCCCCCcccccHHHHHHHHHHhcCCCCCceEEEecCchHHHH
Confidence 4456677777777776 34 44455433 233332 122221123677654
Q ss_pred HHhcCCHHHHHHHHHH-HHHHHH
Q 024914 171 LVELLTRKELQAVLAH-ELGHLK 192 (260)
Q Consensus 171 Ll~~L~~~EL~aVLaH-ElgHi~ 192 (260)
|++.-+.-.-+-|+|| ++||.-
T Consensus 99 Lme~Ntl~~q~LViAHv~yGHnd 121 (498)
T PRK11767 99 LMEENTMTMQALVIAHACYGHNS 121 (498)
T ss_pred HhccCcHHHHHHHHHHHHHhhhh
Confidence 5555566677889999 599964
No 120
>cd04280 ZnMc_astacin_like Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the active protease domain, which is consequently always found at the N-terminus in multi-domain architectures. This family includes: astacin, a digestive enzyme from Crayfish; meprin, a multiple domain membrane component that is constructed from a homologous alpha and beta chain, proteins involved in (bone) morphogenesis, tolloid from drosophila, and the sea urchin SPAN protein, which may also play a role in development.
Probab=28.62 E-value=86 Score=26.44 Aligned_cols=31 Identities=19% Similarity=0.183 Sum_probs=19.4
Q ss_pred eeccCCCCEEEEcHHHHhcCCHHHHHHHHHHHHHHHHc
Q 024914 156 LAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKC 193 (260)
Q Consensus 156 ~G~~~~~~~Ivi~~~Ll~~L~~~EL~aVLaHElgHi~~ 193 (260)
.|..+....|-+.++. +-.+++.||++|...
T Consensus 57 vG~~~~~q~i~l~~~c-------~~~g~v~HE~~HalG 87 (180)
T cd04280 57 VGRVGGRQVVSLGSGC-------FSLGTIVHELMHALG 87 (180)
T ss_pred cCccCCceeEEeCCCc-------CcCchhHHHHHHHhc
Confidence 3443344556665531 226899999999973
No 121
>COG1905 NuoE NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]
Probab=28.53 E-value=1.2e+02 Score=25.68 Aligned_cols=55 Identities=18% Similarity=0.355 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhCCCCC------cEEEEeCCCCceEEeeccCCCCEEEEcHHHHhcCCHHHHHHHHH
Q 024914 126 HQLMTEAAEILNLEAP------DLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLA 185 (260)
Q Consensus 126 ~~~v~~l~~~l~i~~p------~vyv~~~~~~NAfa~G~~~~~~~Ivi~~~Ll~~L~~~EL~aVLa 185 (260)
.++++.+-+++|++.- ++.+. +.++.|-.+..|.+.|+......+|++.+..+|.
T Consensus 94 ~~l~~~l~~~lgi~~gett~DG~ftl~-----~v~ClGaC~~AP~vmind~~~~~lt~e~l~eil~ 154 (160)
T COG1905 94 EALLKALEKKLGIKPGETTADGKFTLE-----PVECLGACGQAPVVMINDDVYGRLTPEKLEEILE 154 (160)
T ss_pred HHHHHHHHHHhCCCCCCcCCCCeEEEe-----eeeeecccccCCEEEECCchhccCCHHHHHHHHH
Confidence 4566666667887532 22222 4568887788899999999999999998887764
No 122
>PF14521 Aspzincin_M35: Lysine-specific metallo-endopeptidase ; PDB: 2X3C_A 2X3A_A 2X3B_A 1GE7_B 1GE6_A 1GE5_A 1G12_A.
Probab=28.14 E-value=84 Score=25.75 Aligned_cols=37 Identities=14% Similarity=0.186 Sum_probs=22.7
Q ss_pred CEEEEcHHHHhc--CCHHHHHHHHHHHHHHH----HccCh-HHH
Q 024914 163 PFVVVHTSLVEL--LTRKELQAVLAHELGHL----KCDHG-VWL 199 (260)
Q Consensus 163 ~~Ivi~~~Ll~~--L~~~EL~aVLaHElgHi----~~~H~-~~~ 199 (260)
..|.|-....+. -..+--.++|.||+.|+ ...|. .|.
T Consensus 77 ~~IyLc~~F~~~p~~g~~Sk~~TLiHE~SHf~~~~~T~D~~~Yg 120 (148)
T PF14521_consen 77 YTIYLCPAFFSAPTTGKDSKEGTLIHEWSHFTAVGGTDDYPAYG 120 (148)
T ss_dssp TEEEE-HHHHHS-SSSTT-HHHHHHHHHHHSCCCT--B-S---S
T ss_pred eEEEEChhhcCCCCCCCCchHHHHHHhhhhhhhhcCCCcccccc
Confidence 489999998874 23456788999999993 34455 454
No 123
>PF13402 M60-like: Peptidase M60-like family; PDB: 4FCA_A.
Probab=26.88 E-value=2.3e+02 Score=25.48 Aligned_cols=32 Identities=22% Similarity=0.106 Sum_probs=17.7
Q ss_pred EEEEcHHHHhc-CCHHHH---HHHHHHHHHHHHccC
Q 024914 164 FVVVHTSLVEL-LTRKEL---QAVLAHELGHLKCDH 195 (260)
Q Consensus 164 ~Ivi~~~Ll~~-L~~~EL---~aVLaHElgHi~~~H 195 (260)
.|..+.+..+. ++.+.+ .=-+.||+||..+.-
T Consensus 199 ~i~~~~~~~~~~l~~~~~~~~~WG~~HE~GH~~Q~~ 234 (307)
T PF13402_consen 199 PIGFPPNWMNELLNPNPLRKGGWGPWHELGHNHQQG 234 (307)
T ss_dssp EEEEETT--HHHH-HHHHHHH-HHHHHHHHHHH-BG
T ss_pred cEEeeCcHHhcccCHhHcCCCCeeehhhhhhhcCcc
Confidence 35555444433 455555 346899999999755
No 124
>KOG3607 consensus Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family [Posttranslational modification, protein turnover, chaperones]
Probab=26.00 E-value=1e+02 Score=32.22 Aligned_cols=16 Identities=50% Similarity=0.594 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 024914 177 RKELQAVLAHELGHLK 192 (260)
Q Consensus 177 ~~EL~aVLaHElgHi~ 192 (260)
....+.|+||||||..
T Consensus 320 ~~~~a~v~AhelgH~l 335 (716)
T KOG3607|consen 320 LLAFAVVLAHELGHNL 335 (716)
T ss_pred chhHHHHHHHHHHhhc
Confidence 5678899999999987
No 125
>cd06162 S2P-M50_PDZ_SREBP Sterol regulatory element-binding protein (SREBP) Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50A), regulates intramembrane proteolysis (RIP) of SREBP and is part of a signal transduction mechanism involved in sterol and lipid metabolism. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of SREBPs from membranes of the endoplasmic reticulum (ER). These domains translocate into the nucleus, where they activate genes of cholesterol and fatty acid biosynthesis. The first cleavage occurs at Site-1 within the ER lumen to generate an intermediate that is subsequently released from the membrane by cleavage at Site-2, which lies within the first transmembrane domain. It is the second proteolytic step that is carried out by the SREBP Site-2 protease (S2P) which is present in this CD family. This group appears to be limited to eumetazoan proteins and contains one PDZ domain.
Probab=25.78 E-value=44 Score=30.70 Aligned_cols=13 Identities=38% Similarity=0.532 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHH
Q 024914 180 LQAVLAHELGHLK 192 (260)
Q Consensus 180 L~aVLaHElgHi~ 192 (260)
+-+|+.||+||..
T Consensus 135 ~isvvvHElgHal 147 (277)
T cd06162 135 LISGVVHEMGHGV 147 (277)
T ss_pred HHHHHHHHHHHHH
Confidence 6689999999986
No 126
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=24.97 E-value=87 Score=26.09 Aligned_cols=56 Identities=21% Similarity=0.306 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhCCCC----Cc-EEEEeCCCCceEEeeccCCCCEEEEcHHHHhcCCHHHHHHHHH
Q 024914 126 HQLMTEAAEILNLEA----PD-LYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLA 185 (260)
Q Consensus 126 ~~~v~~l~~~l~i~~----p~-vyv~~~~~~NAfa~G~~~~~~~Ivi~~~Ll~~L~~~EL~aVLa 185 (260)
.++++.+.+.+|++. ++ .+-++ ...++|..+..|.+.|+..+...++++.+..++.
T Consensus 92 ~~ll~~l~~~Lgi~~gett~Dg~ftL~----~~~ClG~C~~aP~~~in~~~~~~lt~~~~~~il~ 152 (156)
T PRK05988 92 DALAAHAKARLGIDFHQTTADGAVTLE----PVYCLGLCACSPAAMLDGEVHGRLDPQRLDALLA 152 (156)
T ss_pred HHHHHHHHHHhCCCCCCcCCCCeEEEE----eeeecCccCCCCeEEECCEEeCCCCHHHHHHHHH
Confidence 566777777888763 22 12122 3347787778899999999999999999988875
No 127
>COG2317 Zn-dependent carboxypeptidase [Amino acid transport and metabolism]
Probab=24.43 E-value=3.2e+02 Score=27.18 Aligned_cols=63 Identities=17% Similarity=0.095 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhCCCCCcEEEEeCCCCceEEeeccCCCCEEEEcHHHHhcCCH-HHHHHHHHHHHHHHHc
Q 024914 125 LHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTR-KELQAVLAHELGHLKC 193 (260)
Q Consensus 125 L~~~v~~l~~~l~i~~p~vyv~~~~~~NAfa~G~~~~~~~Ivi~~~Ll~~L~~-~EL~aVLaHElgHi~~ 193 (260)
-.+.-.++.+.+|++...-.+-. .+-.||+|++.+ -|-||+..= .-+. +-|.+ +-||.||-..
T Consensus 209 q~~~~~~vl~~lGfdf~~GRlD~--S~HPF~~g~~~~--DVRITTRy~-~~df~~aL~g-~iHE~GHAlY 272 (497)
T COG2317 209 QEALGLRVLELLGFDFERGRLDV--SVHPFTTGLPIN--DVRITTRYN-EQDFRSALFG-TIHETGHALY 272 (497)
T ss_pred HHHHHHHHHHHhCCCccCccccC--CCCCccCCCCCC--ceeEEeecC-CccHHHHHHH-HHHhhhhHHH
Confidence 34455667788888744333333 345699998533 588888732 2333 33333 3499999874
No 128
>COG3824 Predicted Zn-dependent protease [General function prediction only]
Probab=24.27 E-value=39 Score=27.41 Aligned_cols=29 Identities=24% Similarity=0.432 Sum_probs=19.3
Q ss_pred EEEEcHH-HHhcCCH------HHHHHHHHHHHHHHH
Q 024914 164 FVVVHTS-LVELLTR------KELQAVLAHELGHLK 192 (260)
Q Consensus 164 ~Ivi~~~-Ll~~L~~------~EL~aVLaHElgHi~ 192 (260)
.|.+... +++...+ +++.-|+-||+||.-
T Consensus 86 rItlYRrailDywae~eetlgd~vthvliHEIgHhF 121 (136)
T COG3824 86 RITLYRRALLDYWAENEETLGDQVTHVLIHEIGHHF 121 (136)
T ss_pred eeeeeHHHHHHHHhhhhhhHhhHhhhhhhhhhhhhc
Confidence 5666655 4554433 457888999999964
No 129
>cd03081 TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD+ to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH gamma subunit is closely related to NuoE, which is part of a multisubunit complex (Nuo) catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE. Similarly, the FDH gamma subunit is hypothesized to be involved in an electron transport chain involving other FDH subunits, upon the oxidat
Probab=24.09 E-value=2.8e+02 Score=19.97 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=26.9
Q ss_pred eEEeeccCCCCEEEEcHHHHhcCCHHHHHHHHH
Q 024914 153 AYTLAISGKKPFVVVHTSLVELLTRKELQAVLA 185 (260)
Q Consensus 153 Afa~G~~~~~~~Ivi~~~Ll~~L~~~EL~aVLa 185 (260)
+.++|.....|.+.|.......++++.+..++.
T Consensus 46 ~~ClG~C~~gP~~~v~~~~~~~~~~e~i~~il~ 78 (80)
T cd03081 46 VYCLGLCACSPAAMIDGEVHGRVDPEKFDALLA 78 (80)
T ss_pred eeecCccCCCCEEEECCEEECCCCHHHHHHHHH
Confidence 457777778899999998888899988887764
No 130
>cd06461 M2_ACE Peptidase family M2 Angiotensin converting enzyme (ACE, EC 3.4.15.1) is a membrane-bound, zinc dependent dipeptidase that catalyzes the conversion of the decapeptide angiotensin I to the potent vasopressor ocatapeptide angiotensin II, by removing two C-terminal amino acids. There are two forms of the enzyme in humans, the ubiquitous somatic ACE and the sperm-specific germinal ACE, both encoded by the same gene through transcription from alternative promoters. Somatic ACE has two tandem active sites with distinct catalytic properties, whereas germinal ACE, the function of which is largely unknown, has just a single active site. Recently, an ACE homolog, ACE2, has been identified in humans that differs from ACE; it preferentially removes carboxy-terminal hydrophobic or basic amino acids and appears to be important in cardiac function. ACE homologs (also known as members of the M2 gluzincin family) have been found in a wide variety of species, including those that neither h
Probab=23.70 E-value=1.8e+02 Score=28.72 Aligned_cols=63 Identities=19% Similarity=0.294 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhCCC-CCcEEEEe------CCCCceEEee----cc-CCCCEEEEcHHHHhcCCHHHHHHHHHHHHHHH
Q 024914 124 ELHQLMTEAAEILNLE-APDLYVRQ------SPVPNAYTLA----IS-GKKPFVVVHTSLVELLTRKELQAVLAHELGHL 191 (260)
Q Consensus 124 ~L~~~v~~l~~~l~i~-~p~vyv~~------~~~~NAfa~G----~~-~~~~~Ivi~~~Ll~~L~~~EL~aVLaHElgHi 191 (260)
++++..++.-..+|++ .|+.+.-. ... ..++.+ ++ .+.++|..+.. .+.+.+.. +-||+||+
T Consensus 185 ~mf~~~~~ff~smgL~dl~~~fw~~s~~~rp~k~-~~~C~~sawd~~~~~d~rI~~c~~----~t~~D~~t-~~HE~GH~ 258 (477)
T cd06461 185 RMFKEAEEFFTSLGLPPMPPSFWTKSMLEKPTDR-EVVCHASAWDFYNGKDFRIKMCTK----VNMEDFVT-VHHEMGHI 258 (477)
T ss_pred HHHHHHHHHHHHCCCCcCChHHHhhccccCCCCC-CCccCcccccCCCCCCcceeeCCC----CCHHHHHH-HHHHHHHH
Confidence 3444555555667876 55554422 222 334443 32 34567766654 35556655 55999999
Q ss_pred H
Q 024914 192 K 192 (260)
Q Consensus 192 ~ 192 (260)
.
T Consensus 259 ~ 259 (477)
T cd06461 259 Q 259 (477)
T ss_pred H
Confidence 7
No 131
>COG4307 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.41 E-value=67 Score=29.59 Aligned_cols=42 Identities=17% Similarity=0.319 Sum_probs=24.9
Q ss_pred CCCceEEeeccCCCCEEEEcHHHHhcCCHHHHH-----------HHHHHHHHHHH
Q 024914 149 PVPNAYTLAISGKKPFVVVHTSLVELLTRKELQ-----------AVLAHELGHLK 192 (260)
Q Consensus 149 ~~~NAfa~G~~~~~~~Ivi~~~Ll~~L~~~EL~-----------aVLaHElgHi~ 192 (260)
+..-...+|. ++..|.++-.=-+...+|+++ +=.-||+||+.
T Consensus 131 p~~e~vmTGH--d~GlItln~AEaDda~REq~Rvem~EpYRTlLGHFRHE~GHy~ 183 (349)
T COG4307 131 PAGENVMTGH--DNGLITLNLAEADDAHREQLRVEMGEPYRTLLGHFRHEIGHYY 183 (349)
T ss_pred CCCccccccc--cCceEEEeccccchHHHHHHHHHhCCcHHHHHhhhhhhhhhHH
Confidence 3333345565 567888886655444455544 33447888876
No 132
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=23.24 E-value=2.3e+02 Score=24.00 Aligned_cols=56 Identities=16% Similarity=0.179 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhCCCCCc-----EEEEeCCCCceEEeeccCCCCEEEEcHHHHhcCCHHHHHHHHH
Q 024914 126 HQLMTEAAEILNLEAPD-----LYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLA 185 (260)
Q Consensus 126 ~~~v~~l~~~l~i~~p~-----vyv~~~~~~NAfa~G~~~~~~~Ivi~~~Ll~~L~~~EL~aVLa 185 (260)
.++++.+.+++|++.-+ .+-++ ...++|..+..|.+.|+......++++.+..+|.
T Consensus 105 ~~ll~~l~~~Lgi~~gett~DG~ftL~----~~~ClG~C~~AP~~~Vn~~~~~~lt~e~v~~il~ 165 (169)
T PRK07571 105 AAILEDLENELGIKAGETTADGKLSLL----TARCLGACGIAPAVVFDGKVAGKQTPESVLEKVQ 165 (169)
T ss_pred HHHHHHHHHHhCCCCCCcCCCCeEEEE----EecccCccCCCCeEEECCEEeCCCCHHHHHHHHH
Confidence 56777788889986321 12222 2346777778899999999999999999998886
No 133
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=23.24 E-value=63 Score=27.11 Aligned_cols=30 Identities=13% Similarity=0.358 Sum_probs=24.9
Q ss_pred eccCCCCEEEEcHHHHhcCCHHHHHHHHHH
Q 024914 157 AISGKKPFVVVHTSLVELLTRKELQAVLAH 186 (260)
Q Consensus 157 G~~~~~~~Ivi~~~Ll~~L~~~EL~aVLaH 186 (260)
|+.++.|.+++..|++..|+++++..++.+
T Consensus 152 g~~~~~ptl~i~Egvl~Yl~~~~~~~ll~~ 181 (183)
T PF04072_consen 152 GFDPDRPTLFIAEGVLMYLSPEQVDALLRA 181 (183)
T ss_dssp TT-TTSEEEEEEESSGGGS-HHHHHHHHHH
T ss_pred CCCCCCCeEEEEcchhhcCCHHHHHHHHHH
Confidence 666788999999999999999999998864
No 134
>COG4823 AbiF Abortive infection bacteriophage resistance protein [Defense mechanisms]
Probab=22.96 E-value=51 Score=30.17 Aligned_cols=14 Identities=43% Similarity=0.707 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHH
Q 024914 177 RKELQAVLAHELGH 190 (260)
Q Consensus 177 ~~EL~aVLaHElgH 190 (260)
+-+++.||||++||
T Consensus 89 Et~iKs~iAyllg~ 102 (299)
T COG4823 89 ETEIKSVIAYLLGH 102 (299)
T ss_pred HHHHHHHHHHHhcc
Confidence 35799999999999
No 135
>cd04283 ZnMc_hatching_enzyme Zinc-dependent metalloprotease, hatching enzyme-like subfamily. Hatching enzymes are secreted by teleost embryos to digest the egg envelope or chorion. In some teleosts, the hatching enzyme may be a system consisting of two evolutionary related metalloproteases, high choriolytic enzyme and low choriolytic enzyme (HCE and LCE), which may have different substrate specificities and cooperatively digest the chorion.
Probab=22.93 E-value=45 Score=28.59 Aligned_cols=13 Identities=31% Similarity=0.452 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHc
Q 024914 181 QAVLAHELGHLKC 193 (260)
Q Consensus 181 ~aVLaHElgHi~~ 193 (260)
.+++.||++|...
T Consensus 78 ~G~i~HEl~HaLG 90 (182)
T cd04283 78 KGIIQHELLHALG 90 (182)
T ss_pred cchHHHHHHHHhC
Confidence 5899999999983
No 136
>cd03083 TRX_Fd_NuoE_hoxF TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, hoxF; composed of proteins similar to the NAD-reducing hydrogenase (hoxS) alpha subunit of Alcaligenes eutrophus H16. HoxS is a cytoplasmic hydrogenase catalyzing the oxidation of molecular hydrogen accompanied by the reduction of NAD. It is composed of four structural subunits encoded by the genes hoxF, hoxU, hoxY and hoxH. The hoxF protein (or alpha subunit) is a fusion protein containing an N-terminal NuoE-like domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. HoxF may be involved
Probab=22.92 E-value=2.9e+02 Score=19.87 Aligned_cols=33 Identities=9% Similarity=0.221 Sum_probs=26.2
Q ss_pred EEeeccCCCCEEEEcHHHHhcCCHHHHHHHHHH
Q 024914 154 YTLAISGKKPFVVVHTSLVELLTRKELQAVLAH 186 (260)
Q Consensus 154 fa~G~~~~~~~Ivi~~~Ll~~L~~~EL~aVLaH 186 (260)
.+.|.....|.+.|...+...++++.+..++.+
T Consensus 47 gClG~C~~~P~v~V~~~~y~~v~~~~v~~iv~~ 79 (80)
T cd03083 47 SCTGLCDQGPALLINNRVFTRLTPGRIDQIAEL 79 (80)
T ss_pred ceecCcCCCCeEEECCEEECCCCHHHHHHHHhc
Confidence 467777788999998777778899888877753
No 137
>cd04281 ZnMc_BMP1_TLD Zinc-dependent metalloprotease; BMP1/TLD-like subfamily. BMP1 (Bone morphogenetic protein 1) and TLD (tolloid)-like metalloproteases play vital roles in extracellular matrix formation, by cleaving precursor proteins such as enzymes, structural proteins, and proteins involved in the mineralization of the extracellular matrix. The drosophila protein tolloid and its Xenopus homologue xolloid cleave and inactivate Sog and chordin, respectively, which are inhibitors of Dpp (the Drosophila decapentaplegic gene product) and its homologue BMP4, involved in dorso-ventral patterning.
Probab=22.89 E-value=41 Score=29.30 Aligned_cols=13 Identities=38% Similarity=0.687 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHc
Q 024914 181 QAVLAHELGHLKC 193 (260)
Q Consensus 181 ~aVLaHElgHi~~ 193 (260)
.+++.||++|...
T Consensus 88 ~Gti~HEl~HaLG 100 (200)
T cd04281 88 FGIVVHELGHVIG 100 (200)
T ss_pred CchHHHHHHHHhc
Confidence 5899999999883
No 138
>cd06158 S2P-M50_like_1 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with a minimal core protein and no PDZ domains.
Probab=22.06 E-value=59 Score=27.61 Aligned_cols=13 Identities=38% Similarity=0.519 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHH
Q 024914 180 LQAVLAHELGHLK 192 (260)
Q Consensus 180 L~aVLaHElgHi~ 192 (260)
+-++..||++|-.
T Consensus 9 ~~~i~~HE~aHa~ 21 (181)
T cd06158 9 LLAITLHEFAHAY 21 (181)
T ss_pred HHHHHHHHHHHHH
Confidence 4578999999986
No 139
>KOG3714 consensus Meprin A metalloprotease [Posttranslational modification, protein turnover, chaperones]
Probab=22.03 E-value=43 Score=32.32 Aligned_cols=32 Identities=16% Similarity=0.140 Sum_probs=20.0
Q ss_pred EeeccCCC-CEEEEcHHHHhcCCHHHHHHHHHHHHHHHHc
Q 024914 155 TLAISGKK-PFVVVHTSLVELLTRKELQAVLAHELGHLKC 193 (260)
Q Consensus 155 a~G~~~~~-~~Ivi~~~Ll~~L~~~EL~aVLaHElgHi~~ 193 (260)
..|..+++ -.+-+..+-.+ .++++||++|...
T Consensus 140 ~VGr~gg~~q~~sl~~~C~~-------~G~i~HEl~HaLG 172 (411)
T KOG3714|consen 140 YVGRRGGGQQLLSLGDGCDR-------FGTIVHELMHALG 172 (411)
T ss_pred eeCccCCCccceecCCCcCc-------CchhHHHHHHHhh
Confidence 34554433 34555554332 8999999999983
No 140
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=21.30 E-value=77 Score=30.33 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=22.5
Q ss_pred EEEEcHHHHhcC---CHHHHHHHHHHHHHHHHc
Q 024914 164 FVVVHTSLVELL---TRKELQAVLAHELGHLKC 193 (260)
Q Consensus 164 ~Ivi~~~Ll~~L---~~~EL~aVLaHElgHi~~ 193 (260)
.+.+....+..- +.+.+.+.||||+=|..+
T Consensus 120 ~~YiD~~~~~~~~~~~~~~~~sTlAHEfQHmIn 152 (366)
T PF10460_consen 120 YFYIDSETLYLGGNSGPDTVYSTLAHEFQHMIN 152 (366)
T ss_pred EEEEecHHhhccCCccHHHHHHHHHHHHHHHHH
Confidence 666776665432 257899999999999984
No 141
>PHA02456 zinc metallopeptidase motif-containing protein
Probab=21.03 E-value=56 Score=26.14 Aligned_cols=27 Identities=22% Similarity=0.259 Sum_probs=17.4
Q ss_pred CEEEEcHHHHhcCCHHHHHHHHHHHHHHHHc
Q 024914 163 PFVVVHTSLVELLTRKELQAVLAHELGHLKC 193 (260)
Q Consensus 163 ~~Ivi~~~Ll~~L~~~EL~aVLaHElgHi~~ 193 (260)
.+|.|...--+.= -+--++||++|+-+
T Consensus 66 ~~i~IDP~~~~KG----C~~TL~HEL~H~WQ 92 (141)
T PHA02456 66 GWIEIDPDYANKG----CRDTLAHELNHAWQ 92 (141)
T ss_pred eEEEECCcccccc----hHHHHHHHHHHHHh
Confidence 3677666544332 33367999999975
Done!