Query 024915
Match_columns 260
No_of_seqs 378 out of 1720
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 16:40:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024915.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024915hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kt0_A Nanog, homeobox protein 99.8 6.9E-20 2.4E-24 137.0 5.9 63 96-158 19-81 (84)
2 2dmt_A Homeobox protein BARH-l 99.8 9.7E-20 3.3E-24 135.2 5.7 62 97-158 15-76 (80)
3 2da3_A Alpha-fetoprotein enhan 99.8 8.1E-20 2.8E-24 135.2 5.2 63 96-158 14-76 (80)
4 1nk2_P Homeobox protein VND; h 99.8 7.8E-20 2.7E-24 134.8 4.6 65 97-161 7-71 (77)
5 2vi6_A Homeobox protein nanog; 99.8 6.9E-20 2.3E-24 129.6 3.3 60 99-158 3-62 (62)
6 2cue_A Paired box protein PAX6 99.8 3E-19 1E-23 132.5 6.6 62 98-159 6-67 (80)
7 2h1k_A IPF-1, pancreatic and d 99.8 1.3E-19 4.4E-24 128.6 4.4 60 99-158 3-62 (63)
8 2cra_A Homeobox protein HOX-B1 99.8 1.1E-19 3.7E-24 131.6 4.1 61 98-158 6-66 (70)
9 2dmu_A Homeobox protein goosec 99.8 1.9E-19 6.6E-24 130.2 5.2 61 98-158 6-66 (70)
10 1wh5_A ZF-HD homeobox family p 99.8 2.1E-19 7.3E-24 133.7 4.4 60 97-156 15-78 (80)
11 2da2_A Alpha-fetoprotein enhan 99.8 2.1E-19 7.1E-24 130.0 4.2 61 98-158 6-66 (70)
12 2e1o_A Homeobox protein PRH; D 99.8 3.5E-19 1.2E-23 128.9 5.4 61 98-158 6-66 (70)
13 2dmq_A LIM/homeobox protein LH 99.8 4.2E-19 1.4E-23 131.5 5.9 61 98-158 6-66 (80)
14 2dms_A Homeobox protein OTX2; 99.8 3.5E-19 1.2E-23 132.1 5.1 61 98-158 6-66 (80)
15 1ig7_A Homeotic protein MSX-1; 99.8 3.6E-19 1.2E-23 124.1 4.7 57 100-156 1-57 (58)
16 1zq3_P PRD-4, homeotic bicoid 99.8 3.6E-19 1.2E-23 128.2 4.8 61 99-159 2-62 (68)
17 2hdd_A Protein (engrailed home 99.8 2.7E-19 9.3E-24 126.1 4.0 58 99-156 3-60 (61)
18 2djn_A Homeobox protein DLX-5; 99.8 2.1E-19 7.3E-24 130.0 3.5 61 98-158 6-66 (70)
19 1puf_A HOX-1.7, homeobox prote 99.8 8.3E-19 2.8E-23 129.3 6.4 62 98-159 12-73 (77)
20 2da1_A Alpha-fetoprotein enhan 99.8 2.9E-19 9.8E-24 129.2 3.8 61 98-158 6-66 (70)
21 3a01_A Homeodomain-containing 99.7 5.2E-19 1.8E-23 135.1 4.7 64 98-161 16-79 (93)
22 1fjl_A Paired protein; DNA-bin 99.7 8.4E-19 2.9E-23 130.4 5.7 63 97-159 16-78 (81)
23 2da4_A Hypothetical protein DK 99.7 3.7E-19 1.3E-23 132.0 3.6 62 97-158 6-71 (80)
24 1bw5_A ISL-1HD, insulin gene e 99.7 3E-19 1E-23 127.7 3.0 60 99-158 3-62 (66)
25 1jgg_A Segmentation protein EV 99.7 5.4E-19 1.8E-23 124.1 4.2 58 100-157 2-59 (60)
26 1ahd_P Antennapedia protein mu 99.7 4.2E-19 1.4E-23 127.9 3.6 60 99-158 2-61 (68)
27 1wh7_A ZF-HD homeobox family p 99.7 4.6E-19 1.6E-23 132.0 3.7 59 97-156 15-78 (80)
28 3rkq_A Homeobox protein NKX-2. 99.7 7.1E-19 2.4E-23 122.2 4.3 57 99-155 2-58 (58)
29 1yz8_P Pituitary homeobox 2; D 99.7 3E-19 1E-23 128.6 2.3 62 98-159 2-63 (68)
30 2l7z_A Homeobox protein HOX-A1 99.7 1.2E-18 4.2E-23 127.2 5.5 61 98-158 6-66 (73)
31 1b8i_A Ultrabithorax, protein 99.7 5.9E-19 2E-23 131.4 3.7 61 98-158 19-79 (81)
32 1ftt_A TTF-1 HD, thyroid trans 99.7 1E-18 3.5E-23 125.8 4.6 61 99-159 2-62 (68)
33 2m0c_A Homeobox protein arista 99.7 1.1E-18 3.8E-23 127.5 4.8 62 97-158 7-68 (75)
34 2r5y_A Homeotic protein sex co 99.7 1.2E-18 4.2E-23 131.5 5.0 61 98-158 27-87 (88)
35 2ecc_A Homeobox and leucine zi 99.7 1.1E-18 3.6E-23 128.6 4.5 59 101-159 5-63 (76)
36 1uhs_A HOP, homeodomain only p 99.7 1.3E-18 4.6E-23 126.5 5.0 59 100-158 2-61 (72)
37 2k40_A Homeobox expressed in E 99.7 7.7E-19 2.6E-23 126.0 3.3 60 100-159 2-61 (67)
38 2hi3_A Homeodomain-only protei 99.7 1.9E-18 6.4E-23 126.1 5.2 59 100-158 3-62 (73)
39 2da5_A Zinc fingers and homeob 99.7 1.7E-18 5.9E-23 127.1 4.7 60 100-159 8-67 (75)
40 3a02_A Homeobox protein arista 99.7 1.2E-18 4.2E-23 122.3 3.4 57 102-158 2-58 (60)
41 3a03_A T-cell leukemia homeobo 99.7 1.7E-18 5.8E-23 120.1 4.0 54 104-157 2-55 (56)
42 1akh_A Protein (mating-type pr 99.7 1.2E-18 4E-23 122.6 3.2 58 98-155 4-61 (61)
43 2dn0_A Zinc fingers and homeob 99.7 1.6E-18 5.5E-23 127.4 3.4 60 99-158 8-67 (76)
44 1b72_A Protein (homeobox prote 99.7 2.9E-18 1E-22 131.7 4.5 62 98-159 33-94 (97)
45 3nar_A ZHX1, zinc fingers and 99.7 2.2E-18 7.5E-23 132.2 3.8 63 99-161 25-87 (96)
46 2ly9_A Zinc fingers and homeob 99.7 3E-18 1E-22 125.2 4.2 60 99-158 6-65 (74)
47 1x2n_A Homeobox protein pknox1 99.7 5.3E-18 1.8E-22 123.6 5.3 62 98-159 6-70 (73)
48 1puf_B PRE-B-cell leukemia tra 99.7 2.4E-18 8.2E-23 125.4 3.4 63 100-162 2-67 (73)
49 2cuf_A FLJ21616 protein; homeo 99.7 7.5E-18 2.6E-22 128.9 5.1 62 97-158 5-81 (95)
50 1b72_B Protein (PBX1); homeodo 99.7 7.1E-18 2.4E-22 126.8 4.6 61 100-160 2-65 (87)
51 1du6_A PBX1, homeobox protein 99.7 3.5E-18 1.2E-22 121.4 2.5 58 99-156 3-63 (64)
52 1k61_A Mating-type protein alp 99.7 9.8E-18 3.4E-22 117.6 4.1 55 102-156 1-58 (60)
53 2ecb_A Zinc fingers and homeob 99.7 1.4E-17 4.8E-22 126.3 5.2 56 103-158 15-70 (89)
54 2cqx_A LAG1 longevity assuranc 99.7 4.1E-18 1.4E-22 124.3 1.7 58 100-157 9-67 (72)
55 2dmn_A Homeobox protein TGIF2L 99.7 2.3E-17 8E-22 123.4 5.6 61 98-158 6-69 (83)
56 1mnm_C Protein (MAT alpha-2 tr 99.7 3.3E-17 1.1E-21 123.4 4.6 58 98-155 26-86 (87)
57 1wi3_A DNA-binding protein SAT 99.7 3.4E-17 1.2E-21 117.3 4.3 58 98-155 6-64 (71)
58 1e3o_C Octamer-binding transcr 99.7 1.8E-17 6.1E-22 138.4 3.3 60 98-157 100-159 (160)
59 2dmp_A Zinc fingers and homeob 99.7 2.9E-17 9.9E-22 124.4 4.1 57 102-158 16-72 (89)
60 3nau_A Zinc fingers and homeob 99.7 3.4E-17 1.2E-21 117.0 3.8 53 106-158 11-63 (66)
61 1au7_A Protein PIT-1, GHF-1; c 99.7 2.2E-17 7.5E-22 135.9 3.2 61 97-157 85-145 (146)
62 1le8_B Mating-type protein alp 99.7 3.6E-17 1.2E-21 122.2 4.1 60 100-159 3-65 (83)
63 2da6_A Hepatocyte nuclear fact 99.7 8.9E-17 3E-21 124.4 5.9 61 98-158 5-86 (102)
64 2l9r_A Homeobox protein NKX-3. 99.6 2.6E-17 8.8E-22 119.2 2.3 56 104-159 9-64 (69)
65 2xsd_C POU domain, class 3, tr 99.6 3E-17 1E-21 137.6 3.0 63 97-159 97-159 (164)
66 1x2m_A LAG1 longevity assuranc 99.6 2E-17 6.8E-22 118.0 1.5 49 108-156 9-58 (64)
67 3d1n_I POU domain, class 6, tr 99.6 8.5E-17 2.9E-21 132.9 4.9 59 98-156 92-150 (151)
68 2e19_A Transcription factor 8; 99.6 5.3E-17 1.8E-21 115.8 3.1 53 104-156 8-60 (64)
69 1lfb_A Liver transcription fac 99.6 6E-17 2.1E-21 125.1 2.1 62 98-159 8-90 (99)
70 3k2a_A Homeobox protein MEIS2; 99.6 1.7E-16 5.9E-21 114.0 3.1 61 104-164 3-66 (67)
71 3l1p_A POU domain, class 5, tr 99.6 1.8E-16 6.1E-21 131.7 3.4 60 98-157 95-154 (155)
72 2d5v_A Hepatocyte nuclear fact 99.6 3.2E-16 1.1E-20 130.9 3.0 62 97-158 95-156 (164)
73 2da7_A Zinc finger homeobox pr 99.4 4.9E-14 1.7E-18 101.4 3.1 47 108-154 14-60 (71)
74 2lk2_A Homeobox protein TGIF1; 99.4 8E-14 2.7E-18 105.3 4.2 54 104-157 10-66 (89)
75 1ic8_A Hepatocyte nuclear fact 99.4 2.6E-14 9E-19 122.7 0.7 59 98-156 114-193 (194)
76 2h8r_A Hepatocyte nuclear fact 99.3 9.5E-13 3.2E-17 114.6 3.0 58 98-155 141-219 (221)
77 1mh3_A Maltose binding-A1 home 99.3 9.6E-13 3.3E-17 122.1 1.9 56 100-155 366-421 (421)
78 2nzz_A Penetratin conjugated G 98.9 2.4E-11 8.3E-16 77.0 -3.0 23 141-163 1-23 (37)
79 2ys9_A Homeobox and leucine zi 94.6 0.011 3.7E-07 42.2 1.4 39 111-149 18-56 (70)
80 1hjb_A Ccaat/enhancer binding 92.7 0.085 2.9E-06 39.2 3.4 40 151-190 29-72 (87)
81 1gu4_A CAAT/enhancer binding p 90.2 0.47 1.6E-05 34.4 5.0 34 151-187 29-62 (78)
82 2jn6_A Protein CGL2762, transp 85.3 0.082 2.8E-06 38.8 -1.7 43 103-149 3-46 (97)
83 1hlv_A CENP-B, major centromer 79.4 2.4 8E-05 32.2 4.6 50 101-153 3-52 (131)
84 2dgc_A Protein (GCN4); basic d 77.2 6.3 0.00022 27.0 5.8 28 163-190 32-59 (63)
85 1t2k_D Cyclic-AMP-dependent tr 76.7 9.5 0.00033 25.7 6.6 31 159-189 27-57 (61)
86 1ci6_A Transcription factor AT 75.5 9.5 0.00032 26.0 6.3 29 162-190 31-59 (63)
87 2yy0_A C-MYC-binding protein; 74.0 6.3 0.00022 26.2 4.9 31 160-190 18-48 (53)
88 1ci6_A Transcription factor AT 73.2 8.9 0.0003 26.2 5.7 36 151-189 16-51 (63)
89 2glo_A Brinker CG9653-PA; prot 72.0 2 6.9E-05 28.4 2.1 45 103-148 3-47 (59)
90 1hjb_A Ccaat/enhancer binding 70.9 12 0.00042 27.3 6.3 51 156-206 31-81 (87)
91 1t6f_A Geminin; coiled-coil, c 70.6 11 0.00036 23.1 4.8 29 161-189 7-35 (37)
92 2wt7_A Proto-oncogene protein 70.1 15 0.00053 24.8 6.4 23 165-187 27-49 (63)
93 1jnm_A Proto-oncogene C-JUN; B 69.1 13 0.00045 25.1 5.8 25 165-189 26-50 (62)
94 1uii_A Geminin; human, DNA rep 68.8 16 0.00053 26.6 6.3 33 158-190 43-75 (83)
95 2wt7_B Transcription factor MA 68.1 14 0.00049 27.2 6.2 33 157-189 51-83 (90)
96 1gu4_A CAAT/enhancer binding p 67.5 16 0.00054 26.2 6.2 41 151-191 33-73 (78)
97 3m48_A General control protein 65.2 12 0.00042 22.4 4.3 24 168-191 7-30 (33)
98 2oxj_A Hybrid alpha/beta pepti 65.0 12 0.00043 22.5 4.3 24 168-191 8-31 (34)
99 2elh_A CG11849-PA, LD40883P; s 64.4 7 0.00024 27.8 3.8 43 100-147 17-59 (87)
100 1jko_C HIN recombinase, DNA-in 63.7 2 6.8E-05 26.6 0.7 42 105-151 5-46 (52)
101 1dh3_A Transcription factor CR 62.7 25 0.00085 23.3 6.1 28 163-190 24-51 (55)
102 1tc3_C Protein (TC3 transposas 61.7 4.5 0.00015 24.4 2.1 40 105-149 5-44 (51)
103 1iuf_A Centromere ABP1 protein 60.8 9 0.00031 30.0 4.2 52 100-151 6-61 (144)
104 1jnm_A Proto-oncogene C-JUN; B 59.9 15 0.00051 24.8 4.7 38 153-190 21-58 (62)
105 3hug_A RNA polymerase sigma fa 58.3 7.4 0.00025 27.7 3.1 46 105-155 37-82 (92)
106 2wt7_A Proto-oncogene protein 57.6 33 0.0011 23.1 6.2 38 153-190 22-59 (63)
107 1t2k_D Cyclic-AMP-dependent tr 53.4 44 0.0015 22.3 6.2 28 162-189 23-50 (61)
108 3s9g_A Protein hexim1; cyclin 53.3 31 0.001 25.9 5.7 25 162-186 66-90 (104)
109 1s7o_A Hypothetical UPF0122 pr 53.0 22 0.00074 26.8 5.1 47 105-156 22-68 (113)
110 1gd2_E Transcription factor PA 52.7 29 0.001 24.2 5.3 30 159-188 34-63 (70)
111 1l8d_A DNA double-strand break 51.7 39 0.0013 24.9 6.3 44 164-216 13-57 (112)
112 1deb_A APC protein, adenomatou 50.7 24 0.00081 23.2 4.1 24 163-186 5-28 (54)
113 1wlq_A Geminin; coiled-coil; 2 50.5 41 0.0014 24.4 5.8 32 159-190 36-67 (83)
114 1p4w_A RCSB; solution structur 50.4 18 0.00062 26.6 4.1 47 103-155 32-78 (99)
115 3he5_B Synzip2; heterodimeric 50.4 46 0.0016 21.1 5.5 28 158-185 21-48 (52)
116 1nlw_A MAD protein, MAX dimeri 50.2 30 0.001 24.6 5.1 29 156-184 49-77 (80)
117 1nkp_A C-MYC, MYC proto-oncoge 50.0 43 0.0015 24.2 6.1 35 154-188 52-86 (88)
118 2lv7_A Calcium-binding protein 49.6 20 0.00069 25.9 4.3 47 101-147 25-78 (100)
119 3c3g_A Alpha/beta peptide with 49.5 33 0.0011 20.5 4.3 22 169-190 8-29 (33)
120 3c57_A Two component transcrip 49.4 7.9 0.00027 28.0 1.9 45 105-155 27-71 (95)
121 3i5g_B Myosin regulatory light 49.2 29 0.001 26.7 5.5 40 102-141 6-50 (153)
122 1je8_A Nitrate/nitrite respons 48.9 13 0.00045 26.0 3.1 47 104-156 20-66 (82)
123 2wuj_A Septum site-determining 47.9 17 0.00058 24.2 3.3 36 153-188 19-54 (57)
124 2o8x_A Probable RNA polymerase 47.5 6.7 0.00023 25.9 1.2 46 105-155 15-60 (70)
125 1xsv_A Hypothetical UPF0122 pr 46.1 30 0.001 25.8 4.9 46 105-155 25-70 (113)
126 3c3f_A Alpha/beta peptide with 45.2 42 0.0014 20.1 4.3 22 169-190 9-30 (34)
127 2rgt_A Fusion of LIM/homeobox 44.2 0.52 1.8E-05 38.2 -5.9 30 97-126 134-163 (169)
128 2wvr_A Geminin; DNA replicatio 44.1 52 0.0018 27.8 6.3 32 159-190 113-144 (209)
129 1fse_A GERE; helix-turn-helix 43.5 15 0.00052 24.4 2.6 46 104-155 10-55 (74)
130 1go4_E MAD1 (mitotic arrest de 43.5 43 0.0015 25.1 5.2 29 161-189 12-40 (100)
131 1x3u_A Transcriptional regulat 43.4 15 0.00051 24.9 2.6 46 105-156 16-61 (79)
132 3ra3_B P2F; coiled coil domain 43.3 25 0.00086 19.7 2.9 15 173-187 5-19 (28)
133 3lph_A Protein REV; helix-loop 41.8 27 0.00092 24.6 3.6 37 111-161 18-54 (72)
134 2x7l_M HIV REV; nuclear export 41.7 27 0.00092 26.8 3.9 36 111-160 15-50 (115)
135 2yy0_A C-MYC-binding protein; 41.7 45 0.0015 21.9 4.5 28 158-185 23-50 (53)
136 1p9i_A Cortexillin I/GCN4 hybr 41.0 50 0.0017 18.9 4.1 25 166-190 4-28 (31)
137 1nkp_B MAX protein, MYC proto- 40.7 43 0.0015 23.6 4.8 27 158-184 51-77 (83)
138 1uo4_A General control protein 39.3 58 0.002 19.5 4.3 22 169-190 9-30 (34)
139 2jee_A YIIU; FTSZ, septum, coi 38.2 74 0.0025 22.9 5.6 12 173-184 53-64 (81)
140 3mzy_A RNA polymerase sigma-H 38.1 21 0.00072 27.0 2.9 43 105-153 109-151 (164)
141 2p7v_B Sigma-70, RNA polymeras 37.2 17 0.00057 24.2 2.0 49 105-154 5-53 (68)
142 2rnj_A Response regulator prot 35.9 16 0.00056 25.8 1.8 47 104-156 28-74 (91)
143 2bni_A General control protein 35.9 71 0.0024 19.1 4.3 21 170-190 10-30 (34)
144 3gp4_A Transcriptional regulat 35.3 1.2E+02 0.0041 23.4 7.1 33 103-148 38-70 (142)
145 2rn7_A IS629 ORFA; helix, all 35.2 24 0.00083 25.5 2.8 46 103-148 4-52 (108)
146 1q06_A Transcriptional regulat 35.0 74 0.0025 24.4 5.7 73 103-190 36-108 (135)
147 1ku3_A Sigma factor SIGA; heli 34.7 22 0.00075 23.9 2.3 47 105-154 10-58 (73)
148 3gpv_A Transcriptional regulat 33.6 92 0.0031 24.2 6.1 71 103-188 52-122 (148)
149 2dgc_A Protein (GCN4); basic d 32.9 69 0.0024 21.6 4.6 27 159-185 35-61 (63)
150 3ulq_B Transcriptional regulat 32.5 28 0.00096 24.9 2.6 46 102-153 26-71 (90)
151 3m9b_A Proteasome-associated A 32.1 47 0.0016 28.9 4.4 32 158-189 65-96 (251)
152 2wt7_B Transcription factor MA 31.4 72 0.0025 23.4 4.7 51 137-187 17-74 (90)
153 1am9_A Srebp-1A, protein (ster 30.8 63 0.0022 22.8 4.3 27 165-191 54-80 (82)
154 3hnw_A Uncharacterized protein 30.0 1.1E+02 0.0039 23.8 6.0 31 158-188 100-130 (138)
155 2x48_A CAG38821; archeal virus 29.8 21 0.00072 22.4 1.4 39 105-148 13-53 (55)
156 1dip_A Delta-sleep-inducing pe 29.4 1.5E+02 0.0052 20.9 7.4 31 161-191 15-45 (78)
157 1a93_B MAX protein, coiled coi 28.9 89 0.003 18.8 3.9 21 166-186 12-32 (34)
158 2kvr_A Ubiquitin carboxyl-term 28.9 24 0.00084 27.4 1.9 23 129-151 72-94 (130)
159 1gd2_E Transcription factor PA 28.4 64 0.0022 22.4 3.8 18 170-187 38-55 (70)
160 1tty_A Sigma-A, RNA polymerase 28.4 25 0.00087 24.6 1.8 48 105-155 18-67 (87)
161 3hh0_A Transcriptional regulat 28.0 1.1E+02 0.0037 23.9 5.6 68 103-188 40-107 (146)
162 3iv1_A Tumor susceptibility ge 28.0 1.6E+02 0.0056 20.9 6.3 31 149-179 13-43 (78)
163 1q08_A Zn(II)-responsive regul 27.9 92 0.0031 22.0 4.8 61 129-190 8-68 (99)
164 3fmy_A HTH-type transcriptiona 27.5 35 0.0012 22.9 2.3 42 104-152 9-50 (73)
165 2pmy_A RAS and EF-hand domain- 26.9 18 0.00062 25.1 0.7 44 104-147 19-67 (91)
166 2hy6_A General control protein 26.8 1.1E+02 0.0037 18.4 4.3 21 170-190 10-30 (34)
167 1rp3_A RNA polymerase sigma fa 26.4 22 0.00075 28.8 1.3 46 105-155 187-232 (239)
168 3v86_A De novo design helix; c 26.1 90 0.0031 17.2 3.6 22 166-187 5-26 (27)
169 2lhi_A Calmodulin, serine/thre 26.0 58 0.002 25.5 3.7 39 103-141 2-45 (176)
170 2jee_A YIIU; FTSZ, septum, coi 25.9 1.4E+02 0.0046 21.5 5.2 19 161-179 27-45 (81)
171 1or7_A Sigma-24, RNA polymeras 25.9 36 0.0012 26.6 2.5 46 105-155 140-185 (194)
172 1j2o_A FLIN2, fusion of rhombo 25.4 26 0.00089 26.0 1.4 26 23-48 79-104 (114)
173 2q0o_A Probable transcriptiona 25.0 40 0.0014 27.9 2.7 47 103-155 173-219 (236)
174 1u78_A TC3 transposase, transp 24.9 35 0.0012 25.3 2.1 41 104-149 5-45 (141)
175 2xi8_A Putative transcription 24.8 13 0.00045 23.7 -0.3 23 129-151 17-39 (66)
176 2vz4_A Tipal, HTH-type transcr 24.6 92 0.0032 22.7 4.4 66 103-189 37-102 (108)
177 1fi6_A EH domain protein REPS1 24.1 32 0.0011 24.1 1.6 43 105-147 2-49 (92)
178 2r1j_L Repressor protein C2; p 23.7 15 0.0005 23.7 -0.3 24 129-152 21-44 (68)
179 2jpc_A SSRB; DNA binding prote 23.5 17 0.00059 23.3 0.0 26 130-155 17-42 (61)
180 3o9x_A Uncharacterized HTH-typ 23.5 39 0.0014 25.3 2.2 41 105-152 70-110 (133)
181 3w03_C DNA repair protein XRCC 23.2 97 0.0033 25.6 4.6 21 166-186 157-177 (184)
182 1zug_A Phage 434 CRO protein; 22.3 16 0.00054 23.8 -0.4 24 129-152 19-42 (71)
183 1c07_A Protein (epidermal grow 22.3 31 0.001 24.4 1.2 43 105-147 3-50 (95)
184 3bd1_A CRO protein; transcript 22.1 16 0.00053 24.9 -0.5 23 129-151 14-36 (79)
185 3clo_A Transcriptional regulat 22.1 66 0.0023 27.1 3.5 47 104-156 196-242 (258)
186 1kd8_B GABH BLL, GCN4 acid bas 21.9 1.4E+02 0.0049 18.0 5.0 22 169-190 9-30 (36)
187 1dh3_A Transcription factor CR 21.7 80 0.0027 20.7 3.1 19 169-187 23-41 (55)
188 3bs3_A Putative DNA-binding pr 21.6 18 0.0006 24.0 -0.3 24 129-152 26-49 (76)
189 3q4f_C DNA repair protein XRCC 21.6 73 0.0025 26.4 3.4 16 168-183 168-183 (186)
190 1r8d_A Transcription activator 21.2 1.4E+02 0.0048 21.6 4.8 65 104-189 39-103 (109)
191 3plu_A Ubiquitin-like modifier 21.1 49 0.0017 24.4 2.1 26 129-154 48-73 (93)
192 2k27_A Paired box protein PAX- 21.1 77 0.0026 24.3 3.5 47 97-148 17-63 (159)
193 2q24_A Putative TETR family tr 20.7 33 0.0011 26.6 1.2 41 111-153 21-61 (194)
194 2a6c_A Helix-turn-helix motif; 20.7 29 0.001 23.8 0.8 23 129-151 34-56 (83)
195 1adr_A P22 C2 repressor; trans 20.2 19 0.00065 23.7 -0.3 24 129-152 21-44 (76)
196 1l3l_A Transcriptional activat 20.2 57 0.0019 26.9 2.7 47 103-155 171-217 (234)
197 2q1z_A RPOE, ECF SIGE; ECF sig 20.1 27 0.00094 27.2 0.6 45 106-155 136-180 (184)
No 1
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.79 E-value=6.9e-20 Score=137.01 Aligned_cols=63 Identities=35% Similarity=0.493 Sum_probs=59.0
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHh
Q 024915 96 EGGSPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQ 158 (260)
Q Consensus 96 ~~~~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~ 158 (260)
..+.+|.|+.|+..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+.+
T Consensus 19 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 19 PVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 344678899999999999999999999999999999999999999999999999999999764
No 2
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=9.7e-20 Score=135.24 Aligned_cols=62 Identities=34% Similarity=0.481 Sum_probs=58.4
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHh
Q 024915 97 GGSPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQ 158 (260)
Q Consensus 97 ~~~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~ 158 (260)
.+.+|.|+.|+.+|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+..
T Consensus 15 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 15 KKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 34678899999999999999999999999999999999999999999999999999999754
No 3
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.78 E-value=8.1e-20 Score=135.23 Aligned_cols=63 Identities=29% Similarity=0.419 Sum_probs=59.0
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHh
Q 024915 96 EGGSPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQ 158 (260)
Q Consensus 96 ~~~~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~ 158 (260)
..+.+|.|++||.+|+.+||..|..++||+..++++||.+|||+++||+|||||||+|+|+++
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 344678899999999999999999999999999999999999999999999999999999864
No 4
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.78 E-value=7.8e-20 Score=134.79 Aligned_cols=65 Identities=34% Similarity=0.567 Sum_probs=60.2
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHhhHH
Q 024915 97 GGSPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQTEV 161 (260)
Q Consensus 97 ~~~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~~~~ 161 (260)
.+.+|.|++||..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+.+...
T Consensus 7 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 7 NKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 34678899999999999999999999999999999999999999999999999999999876544
No 5
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.77 E-value=6.9e-20 Score=129.56 Aligned_cols=60 Identities=35% Similarity=0.540 Sum_probs=53.6
Q ss_pred CCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHh
Q 024915 99 SPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQ 158 (260)
Q Consensus 99 ~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~ 158 (260)
.+|.|+.|+..|+.+||..|..++||+..++.+||..+||+++||+|||||||+|+|+++
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhcC
Confidence 578899999999999999999999999999999999999999999999999999999864
No 6
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=3e-19 Score=132.54 Aligned_cols=62 Identities=27% Similarity=0.505 Sum_probs=58.5
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHhh
Q 024915 98 GSPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQT 159 (260)
Q Consensus 98 ~~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~~ 159 (260)
..+|+|+.|+.+|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+.+.
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (80)
T 2cue_A 6 SGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 67 (80)
T ss_dssp SSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhh
Confidence 46788999999999999999999999999999999999999999999999999999997654
No 7
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.77 E-value=1.3e-19 Score=128.60 Aligned_cols=60 Identities=33% Similarity=0.533 Sum_probs=56.1
Q ss_pred CCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHh
Q 024915 99 SPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQ 158 (260)
Q Consensus 99 ~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~ 158 (260)
.+|.|+.||..|+.+||..|..++||+..++.+||..+||+++||+|||||||+|+|+.+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 578899999999999999999999999999999999999999999999999999999753
No 8
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=1.1e-19 Score=131.61 Aligned_cols=61 Identities=25% Similarity=0.534 Sum_probs=58.1
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHh
Q 024915 98 GSPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQ 158 (260)
Q Consensus 98 ~~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~ 158 (260)
+.+|+|++|+..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 6 SGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 4678899999999999999999999999999999999999999999999999999999754
No 9
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.9e-19 Score=130.19 Aligned_cols=61 Identities=34% Similarity=0.558 Sum_probs=58.0
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHh
Q 024915 98 GSPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQ 158 (260)
Q Consensus 98 ~~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~ 158 (260)
..+|+|++|+.+|+.+||..|..++||+..++.+||.+|||+++||+|||||||+|+|+..
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 3678899999999999999999999999999999999999999999999999999999764
No 10
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.76 E-value=2.1e-19 Score=133.71 Aligned_cols=60 Identities=13% Similarity=0.215 Sum_probs=56.8
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhh----CCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHH
Q 024915 97 GGSPRKKLRLTKPQFATLEDTFKE----HSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKL 156 (260)
Q Consensus 97 ~~~~r~Rt~~t~~Ql~~Le~~F~~----~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk 156 (260)
.+.+|+|+.||.+|+..||..|.. ++||+..++++||..|||+++||+|||||||+|+|+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 346788999999999999999999 999999999999999999999999999999999874
No 11
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.76 E-value=2.1e-19 Score=129.95 Aligned_cols=61 Identities=28% Similarity=0.452 Sum_probs=58.1
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHh
Q 024915 98 GSPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQ 158 (260)
Q Consensus 98 ~~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~ 158 (260)
+.+|+|++|+.+|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|++.
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 6 SGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 4678899999999999999999999999999999999999999999999999999999754
No 12
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.76 E-value=3.5e-19 Score=128.92 Aligned_cols=61 Identities=36% Similarity=0.590 Sum_probs=57.7
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHh
Q 024915 98 GSPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQ 158 (260)
Q Consensus 98 ~~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~ 158 (260)
..+++|++|+.+|+.+||..|..++||+..++.+||.+|||+++||++||||||+|+|+..
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 3577899999999999999999999999999999999999999999999999999999764
No 13
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=4.2e-19 Score=131.54 Aligned_cols=61 Identities=28% Similarity=0.435 Sum_probs=58.0
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHh
Q 024915 98 GSPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQ 158 (260)
Q Consensus 98 ~~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~ 158 (260)
+.+|.|++|+.+|+.+||..|..++||+..++.+||.+|||+++||+|||||||+|+|++.
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (80)
T 2dmq_A 6 SGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNL 66 (80)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999754
No 14
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=3.5e-19 Score=132.11 Aligned_cols=61 Identities=31% Similarity=0.521 Sum_probs=58.1
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHh
Q 024915 98 GSPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQ 158 (260)
Q Consensus 98 ~~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~ 158 (260)
+.+|+|++|+.+|+.+||..|..++||+..++.+||.+|||+++||+|||||||+|+|+++
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~ 66 (80)
T 2dms_A 6 SGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQ 66 (80)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHH
Confidence 4678899999999999999999999999999999999999999999999999999999754
No 15
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.76 E-value=3.6e-19 Score=124.06 Aligned_cols=57 Identities=33% Similarity=0.592 Sum_probs=55.1
Q ss_pred CCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHH
Q 024915 100 PRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKL 156 (260)
Q Consensus 100 ~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk 156 (260)
+|+|+.||.+|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 478899999999999999999999999999999999999999999999999999986
No 16
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.76 E-value=3.6e-19 Score=128.21 Aligned_cols=61 Identities=34% Similarity=0.573 Sum_probs=58.0
Q ss_pred CCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHhh
Q 024915 99 SPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQT 159 (260)
Q Consensus 99 ~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~~ 159 (260)
.+|.|+.||..|+.+||..|..++||+..++.+||..|||++++|+|||||||+|+|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhc
Confidence 5788999999999999999999999999999999999999999999999999999997653
No 17
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.76 E-value=2.7e-19 Score=126.05 Aligned_cols=58 Identities=31% Similarity=0.609 Sum_probs=53.2
Q ss_pred CCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHH
Q 024915 99 SPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKL 156 (260)
Q Consensus 99 ~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk 156 (260)
.+|.|+.||.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 4788999999999999999999999999999999999999999999999999999986
No 18
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.1e-19 Score=130.04 Aligned_cols=61 Identities=28% Similarity=0.476 Sum_probs=57.9
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHh
Q 024915 98 GSPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQ 158 (260)
Q Consensus 98 ~~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~ 158 (260)
+.+|+|+.||.+|+.+||..|..++||+..++.+||.++||+++||++||||||+|+|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 6 SGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 4678899999999999999999999999999999999999999999999999999999753
No 19
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.76 E-value=8.3e-19 Score=129.27 Aligned_cols=62 Identities=35% Similarity=0.490 Sum_probs=58.5
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHhh
Q 024915 98 GSPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQT 159 (260)
Q Consensus 98 ~~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~~ 159 (260)
..+|+|++|+..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+...
T Consensus 12 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 12 STRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp TTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 36788999999999999999999999999999999999999999999999999999997654
No 20
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.75 E-value=2.9e-19 Score=129.22 Aligned_cols=61 Identities=23% Similarity=0.406 Sum_probs=58.1
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHh
Q 024915 98 GSPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQ 158 (260)
Q Consensus 98 ~~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~ 158 (260)
+.+|+|++||.+|+.+||..|..++||+..++.+||..+||+++||+|||||||+|+|+..
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 6 SGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 4678899999999999999999999999999999999999999999999999999999754
No 21
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.75 E-value=5.2e-19 Score=135.08 Aligned_cols=64 Identities=30% Similarity=0.509 Sum_probs=59.6
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHhhHH
Q 024915 98 GSPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQTEV 161 (260)
Q Consensus 98 ~~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~~~~ 161 (260)
+.+|+|+.||.+|+.+||..|..++||+..++.+||..+||+++||+|||||||+|+|++..+.
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~ 79 (93)
T 3a01_A 16 KRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEE 79 (93)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHH
Confidence 4678899999999999999999999999999999999999999999999999999999865543
No 22
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.75 E-value=8.4e-19 Score=130.36 Aligned_cols=63 Identities=30% Similarity=0.510 Sum_probs=58.7
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHhh
Q 024915 97 GGSPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQT 159 (260)
Q Consensus 97 ~~~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~~ 159 (260)
.+.+|.|+.|+..|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|++..
T Consensus 16 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 16 RKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp -CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 346788999999999999999999999999999999999999999999999999999998654
No 23
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=3.7e-19 Score=132.01 Aligned_cols=62 Identities=21% Similarity=0.433 Sum_probs=58.3
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhC----CCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHh
Q 024915 97 GGSPRKKLRLTKPQFATLEDTFKEH----STLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQ 158 (260)
Q Consensus 97 ~~~~r~Rt~~t~~Ql~~Le~~F~~~----~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~ 158 (260)
.+.+|.|+.||.+|+.+||..|..+ +||+..++++||.+|||+++||+|||||||+|+|+..
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 3467889999999999999999999 9999999999999999999999999999999999754
No 24
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.75 E-value=3e-19 Score=127.74 Aligned_cols=60 Identities=30% Similarity=0.526 Sum_probs=57.5
Q ss_pred CCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHh
Q 024915 99 SPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQ 158 (260)
Q Consensus 99 ~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~ 158 (260)
.+|.|+.||.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|++.
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 578899999999999999999999999999999999999999999999999999999765
No 25
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.75 E-value=5.4e-19 Score=124.13 Aligned_cols=58 Identities=34% Similarity=0.569 Sum_probs=55.3
Q ss_pred CCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHH
Q 024915 100 PRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLK 157 (260)
Q Consensus 100 ~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~ 157 (260)
+|.|+.||.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5789999999999999999999999999999999999999999999999999999974
No 26
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.75 E-value=4.2e-19 Score=127.93 Aligned_cols=60 Identities=32% Similarity=0.510 Sum_probs=57.3
Q ss_pred CCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHh
Q 024915 99 SPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQ 158 (260)
Q Consensus 99 ~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~ 158 (260)
.+|.|+.||..|+..||..|..++||+..++.+||..+||+++||+|||||||+|+|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhc
Confidence 468899999999999999999999999999999999999999999999999999999764
No 27
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.75 E-value=4.6e-19 Score=131.95 Aligned_cols=59 Identities=15% Similarity=0.309 Sum_probs=55.5
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHH
Q 024915 97 GGSPRKKLRLTKPQFATLEDTFKE-----HSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKL 156 (260)
Q Consensus 97 ~~~~r~Rt~~t~~Ql~~Le~~F~~-----~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk 156 (260)
.+.+|+|+.||.+|+..|| .|.. ++||+..++++||.+|||+++||+|||||||+|+|+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 15 GTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 3467889999999999999 7999 999999999999999999999999999999999875
No 28
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.74 E-value=7.1e-19 Score=122.15 Aligned_cols=57 Identities=37% Similarity=0.612 Sum_probs=54.8
Q ss_pred CCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHH
Q 024915 99 SPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSK 155 (260)
Q Consensus 99 ~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~K 155 (260)
.+|.|+.|+..|+..||..|..++||+..++.+||..+||+++||++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 468899999999999999999999999999999999999999999999999999976
No 29
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.74 E-value=3e-19 Score=128.56 Aligned_cols=62 Identities=29% Similarity=0.487 Sum_probs=58.5
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHhh
Q 024915 98 GSPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQT 159 (260)
Q Consensus 98 ~~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~~ 159 (260)
+.+|.|+.|+..|+.+||..|..++||+..++.+||..+||+++||+|||||||+|+|+++.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 35788999999999999999999999999999999999999999999999999999998654
No 30
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.74 E-value=1.2e-18 Score=127.17 Aligned_cols=61 Identities=30% Similarity=0.532 Sum_probs=57.8
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHh
Q 024915 98 GSPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQ 158 (260)
Q Consensus 98 ~~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~ 158 (260)
..+|+|++|+..|+.+||..|..++||+..++.+||..+||+++||+|||||||+|+|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 6 EGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp CCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 3578899999999999999999999999999999999999999999999999999999754
No 31
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.74 E-value=5.9e-19 Score=131.40 Aligned_cols=61 Identities=31% Similarity=0.489 Sum_probs=54.5
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHh
Q 024915 98 GSPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQ 158 (260)
Q Consensus 98 ~~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~ 158 (260)
..+|.|+.|+..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+..
T Consensus 19 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 19 LRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp -----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 4678899999999999999999999999999999999999999999999999999999764
No 32
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.74 E-value=1e-18 Score=125.82 Aligned_cols=61 Identities=31% Similarity=0.584 Sum_probs=57.7
Q ss_pred CCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHhh
Q 024915 99 SPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQT 159 (260)
Q Consensus 99 ~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~~ 159 (260)
.+|.|+.||..|+.+||..|..++||+..++.+||..+||++++|+|||||||+|+|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 4688999999999999999999999999999999999999999999999999999997653
No 33
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-18 Score=127.46 Aligned_cols=62 Identities=31% Similarity=0.512 Sum_probs=58.3
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHh
Q 024915 97 GGSPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQ 158 (260)
Q Consensus 97 ~~~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~ 158 (260)
.+.+|.|++|+..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|++.
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999754
No 34
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.74 E-value=1.2e-18 Score=131.51 Aligned_cols=61 Identities=31% Similarity=0.525 Sum_probs=55.3
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHh
Q 024915 98 GSPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQ 158 (260)
Q Consensus 98 ~~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~ 158 (260)
..+|+|+.|+..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+.+
T Consensus 27 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 27 ETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 4678899999999999999999999999999999999999999999999999999999753
No 35
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=1.1e-18 Score=128.58 Aligned_cols=59 Identities=25% Similarity=0.250 Sum_probs=55.2
Q ss_pred CCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHhh
Q 024915 101 RKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQT 159 (260)
Q Consensus 101 r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~~ 159 (260)
.+|++||.+|+.+||..|..++||+..++++||..+||+++||+|||||||+|+|+.++
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 45677999999999999999999999999999999999999999999999999997654
No 36
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.74 E-value=1.3e-18 Score=126.50 Aligned_cols=59 Identities=22% Similarity=0.329 Sum_probs=55.7
Q ss_pred CCCCccCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHh
Q 024915 100 PRKKLRLTKPQFATLEDTFKE-HSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQ 158 (260)
Q Consensus 100 ~r~Rt~~t~~Ql~~Le~~F~~-~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~ 158 (260)
.++|++|+.+|+.+||..|.. ++||+..++.+||.++||+++||+|||||||+|+|++.
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 467899999999999999996 99999999999999999999999999999999999754
No 37
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.73 E-value=7.7e-19 Score=125.96 Aligned_cols=60 Identities=33% Similarity=0.535 Sum_probs=57.4
Q ss_pred CCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHhh
Q 024915 100 PRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQT 159 (260)
Q Consensus 100 ~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~~ 159 (260)
+|+|+.||.+|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|++..
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 688999999999999999999999999999999999999999999999999999998654
No 38
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.73 E-value=1.9e-18 Score=126.13 Aligned_cols=59 Identities=22% Similarity=0.278 Sum_probs=55.8
Q ss_pred CCCCccCCHHHHHHHHHHHh-hCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHh
Q 024915 100 PRKKLRLTKPQFATLEDTFK-EHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQ 158 (260)
Q Consensus 100 ~r~Rt~~t~~Ql~~Le~~F~-~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~ 158 (260)
+++|++||.+|+.+||..|. .++||+..++.+||..+||+++||++||||||+|+|+.+
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 57789999999999999999 599999999999999999999999999999999999754
No 39
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.7e-18 Score=127.07 Aligned_cols=60 Identities=22% Similarity=0.433 Sum_probs=56.0
Q ss_pred CCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHhh
Q 024915 100 PRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQT 159 (260)
Q Consensus 100 ~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~~ 159 (260)
.++|++||.+|+.+||..|..++||+..++.+||.++||+++||+|||||||+|+|++..
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSC
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhh
Confidence 456778999999999999999999999999999999999999999999999999997653
No 40
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.73 E-value=1.2e-18 Score=122.28 Aligned_cols=57 Identities=30% Similarity=0.498 Sum_probs=50.7
Q ss_pred CCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHh
Q 024915 102 KKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQ 158 (260)
Q Consensus 102 ~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~ 158 (260)
.|++||.+|+.+||..|..++||+..++.+||.++||+++||++||||||+|+|+.+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 478999999999999999999999999999999999999999999999999999754
No 41
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.73 E-value=1.7e-18 Score=120.07 Aligned_cols=54 Identities=30% Similarity=0.540 Sum_probs=50.9
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHH
Q 024915 104 LRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLK 157 (260)
Q Consensus 104 t~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~ 157 (260)
|.|+.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999999999999999999999974
No 42
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.73 E-value=1.2e-18 Score=122.62 Aligned_cols=58 Identities=40% Similarity=0.654 Sum_probs=48.6
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHH
Q 024915 98 GSPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSK 155 (260)
Q Consensus 98 ~~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~K 155 (260)
+.+|.|++|+..|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp --------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 4678899999999999999999999999999999999999999999999999999976
No 43
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.6e-18 Score=127.43 Aligned_cols=60 Identities=20% Similarity=0.340 Sum_probs=56.3
Q ss_pred CCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHh
Q 024915 99 SPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQ 158 (260)
Q Consensus 99 ~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~ 158 (260)
+.+.|++||.+|+.+||..|..++||+..++++||.++||+++||++||||||+|+|++.
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 345689999999999999999999999999999999999999999999999999999754
No 44
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=2.9e-18 Score=131.74 Aligned_cols=62 Identities=31% Similarity=0.514 Sum_probs=55.9
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHhh
Q 024915 98 GSPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQT 159 (260)
Q Consensus 98 ~~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~~ 159 (260)
..+++|+.||..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|++..
T Consensus 33 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 33 SPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp ----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 46788999999999999999999999999999999999999999999999999999998653
No 45
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.72 E-value=2.2e-18 Score=132.23 Aligned_cols=63 Identities=24% Similarity=0.272 Sum_probs=57.9
Q ss_pred CCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHhhHH
Q 024915 99 SPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQTEV 161 (260)
Q Consensus 99 ~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~~~~ 161 (260)
.+|+|++|+.+|+.+||..|..++||+..++.+||.+|||+++||+|||||||+|+|+.+++-
T Consensus 25 ~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk~ 87 (96)
T 3nar_A 25 STGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLKW 87 (96)
T ss_dssp --CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCHH
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcccH
Confidence 568899999999999999999999999999999999999999999999999999999876543
No 46
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.71 E-value=3e-18 Score=125.15 Aligned_cols=60 Identities=18% Similarity=0.258 Sum_probs=57.2
Q ss_pred CCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHh
Q 024915 99 SPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQ 158 (260)
Q Consensus 99 ~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~ 158 (260)
.++.|+.||.+|+.+||..|..++||+..++.+||.++||+++||++||||||+|+|+.+
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 467899999999999999999999999999999999999999999999999999999764
No 47
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=5.3e-18 Score=123.57 Aligned_cols=62 Identities=24% Similarity=0.279 Sum_probs=57.9
Q ss_pred CCCCCCccCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHhh
Q 024915 98 GSPRKKLRLTKPQFATLEDTFKE---HSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQT 159 (260)
Q Consensus 98 ~~~r~Rt~~t~~Ql~~Le~~F~~---~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~~ 159 (260)
+.+++|++|+..|+.+||..|.. ++||+..++++||.++||+++||++||||||+|+|+..+
T Consensus 6 ~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 6 SGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp SSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 46788999999999999999987 999999999999999999999999999999999997654
No 48
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.71 E-value=2.4e-18 Score=125.38 Aligned_cols=63 Identities=29% Similarity=0.398 Sum_probs=58.8
Q ss_pred CCCCccCCHHHHHHHHHHH---hhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHhhHHH
Q 024915 100 PRKKLRLTKPQFATLEDTF---KEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQTEVE 162 (260)
Q Consensus 100 ~r~Rt~~t~~Ql~~Le~~F---~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~~~~~ 162 (260)
+|+|++|+..|+.+|+..| ..++||+..++..||..+||+++||++||||||+|+|+......
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~~ 67 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQ 67 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccccc
Confidence 6889999999999999999 89999999999999999999999999999999999998765543
No 49
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=7.5e-18 Score=128.95 Aligned_cols=62 Identities=23% Similarity=0.376 Sum_probs=58.3
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC---------------CCCcceeecccchhHHHHHHh
Q 024915 97 GGSPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLN---------------LRPRQVEVWFQNRRARSKLKQ 158 (260)
Q Consensus 97 ~~~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lg---------------Ls~rqVkvWFQNRRak~Kk~~ 158 (260)
.+.+|.|+.|+..|+.+||..|..++||+..++++||..|+ |++.+|++||||||+|+|+++
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~ 81 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRA 81 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHh
Confidence 34678899999999999999999999999999999999999 999999999999999999754
No 50
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.70 E-value=7.1e-18 Score=126.80 Aligned_cols=61 Identities=30% Similarity=0.401 Sum_probs=56.9
Q ss_pred CCCCccCCHHHHHHHHHHH---hhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHhhH
Q 024915 100 PRKKLRLTKPQFATLEDTF---KEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQTE 160 (260)
Q Consensus 100 ~r~Rt~~t~~Ql~~Le~~F---~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~~~ 160 (260)
+|+|++|+.+|+.+||..| ..++||+..++.+||.++||+++||++||||||+|+|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 6889999999999999999 899999999999999999999999999999999999986543
No 51
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.70 E-value=3.5e-18 Score=121.40 Aligned_cols=58 Identities=28% Similarity=0.361 Sum_probs=55.6
Q ss_pred CCCCCccCCHHHHHHHHHHH---hhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHH
Q 024915 99 SPRKKLRLTKPQFATLEDTF---KEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKL 156 (260)
Q Consensus 99 ~~r~Rt~~t~~Ql~~Le~~F---~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk 156 (260)
.+++|+.|+.+|+.+||..| ..++||+..++.+||.++||+++||++||||||+|+|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 46889999999999999999 89999999999999999999999999999999999986
No 52
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.69 E-value=9.8e-18 Score=117.56 Aligned_cols=55 Identities=29% Similarity=0.439 Sum_probs=53.0
Q ss_pred CCccCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHH
Q 024915 102 KKLRLTKPQFATLEDTFKE---HSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKL 156 (260)
Q Consensus 102 ~Rt~~t~~Ql~~Le~~F~~---~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk 156 (260)
+|++|+.+|+.+||..|.. ++||+..++.+||.++||+++||++||||||+|+|+
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 4689999999999999999 999999999999999999999999999999999986
No 53
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=1.4e-17 Score=126.26 Aligned_cols=56 Identities=23% Similarity=0.440 Sum_probs=52.9
Q ss_pred CccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHh
Q 024915 103 KLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQ 158 (260)
Q Consensus 103 Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~ 158 (260)
..+||.+|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|++.
T Consensus 15 ~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 15 FKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred hccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 34899999999999999999999999999999999999999999999999998743
No 54
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.69 E-value=4.1e-18 Score=124.33 Aligned_cols=58 Identities=24% Similarity=0.393 Sum_probs=54.5
Q ss_pred CCCCccCCHHHHHHHHHHH-hhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHH
Q 024915 100 PRKKLRLTKPQFATLEDTF-KEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLK 157 (260)
Q Consensus 100 ~r~Rt~~t~~Ql~~Le~~F-~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~ 157 (260)
.+.|++++.+|+.+||..| ..++||+..++.+||.+|||+++||+|||||||+|+|+.
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 4667789999999999999 999999999999999999999999999999999999964
No 55
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.68 E-value=2.3e-17 Score=123.36 Aligned_cols=61 Identities=30% Similarity=0.330 Sum_probs=56.5
Q ss_pred CCCCCCccCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHh
Q 024915 98 GSPRKKLRLTKPQFATLEDTFKE---HSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQ 158 (260)
Q Consensus 98 ~~~r~Rt~~t~~Ql~~Le~~F~~---~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~ 158 (260)
+.+++|++|+.+|+.+|+.+|.. ++||+..+|++||.++||+++||++||||||+|+|+..
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~ 69 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDM 69 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHH
Confidence 46788899999999999999987 59999999999999999999999999999999998643
No 56
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.67 E-value=3.3e-17 Score=123.39 Aligned_cols=58 Identities=29% Similarity=0.451 Sum_probs=55.3
Q ss_pred CCCCCCccCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCCcceeecccchhHHHH
Q 024915 98 GSPRKKLRLTKPQFATLEDTFKE---HSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSK 155 (260)
Q Consensus 98 ~~~r~Rt~~t~~Ql~~Le~~F~~---~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~K 155 (260)
+++++|++|+.+|+.+||..|.. ++||+..++.+||..+||+++||++||||||+|+|
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 35677899999999999999999 99999999999999999999999999999999987
No 57
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.67 E-value=3.4e-17 Score=117.26 Aligned_cols=58 Identities=19% Similarity=0.341 Sum_probs=54.5
Q ss_pred CCCCCCccCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhCCCCcceeecccchhHHHH
Q 024915 98 GSPRKKLRLTKPQFATLEDTFKE-HSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSK 155 (260)
Q Consensus 98 ~~~r~Rt~~t~~Ql~~Le~~F~~-~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~K 155 (260)
..+|.||.|+.+|+..|+..|.. ++||+.+.|+.||.++||++++|+|||||||.-.|
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 46899999999999999999999 99999999999999999999999999999997543
No 58
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.66 E-value=1.8e-17 Score=138.35 Aligned_cols=60 Identities=27% Similarity=0.449 Sum_probs=54.7
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHH
Q 024915 98 GSPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLK 157 (260)
Q Consensus 98 ~~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~ 157 (260)
+.+|+|+.|+..|+.+||..|..++||+..++.+||.++||+++||+|||||||+|+|++
T Consensus 100 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 100 RRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 467889999999999999999999999999999999999999999999999999999974
No 59
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.9e-17 Score=124.44 Aligned_cols=57 Identities=26% Similarity=0.364 Sum_probs=53.0
Q ss_pred CCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHh
Q 024915 102 KKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQ 158 (260)
Q Consensus 102 ~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~ 158 (260)
++.+||.+|+.+||..|..++||+..++++||.++||+++||+|||||||+|+|++.
T Consensus 16 k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 344599999999999999999999999999999999999999999999999998643
No 60
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.66 E-value=3.4e-17 Score=117.03 Aligned_cols=53 Identities=25% Similarity=0.333 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHh
Q 024915 106 LTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQ 158 (260)
Q Consensus 106 ~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~ 158 (260)
-|.+|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|+.+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 36899999999999999999999999999999999999999999999999754
No 61
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.66 E-value=2.2e-17 Score=135.93 Aligned_cols=61 Identities=34% Similarity=0.499 Sum_probs=55.6
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHH
Q 024915 97 GGSPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLK 157 (260)
Q Consensus 97 ~~~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~ 157 (260)
.+.+|+|+.|+..|+..||..|..++||+..++.+||..+||+++||+|||||||+|+|++
T Consensus 85 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 85 ERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 3467889999999999999999999999999999999999999999999999999999975
No 62
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.66 E-value=3.6e-17 Score=122.23 Aligned_cols=60 Identities=28% Similarity=0.411 Sum_probs=54.7
Q ss_pred CCCCccCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHhh
Q 024915 100 PRKKLRLTKPQFATLEDTFKE---HSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQT 159 (260)
Q Consensus 100 ~r~Rt~~t~~Ql~~Le~~F~~---~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~~ 159 (260)
+++|++|+.+|+.+||..|.. ++||+..++.+||..+||+++||++||||||+|+|+...
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 456677999999999999999 999999999999999999999999999999999997643
No 63
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=8.9e-17 Score=124.45 Aligned_cols=61 Identities=21% Similarity=0.390 Sum_probs=57.2
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHh---------------------CCCCcceeecccchhHHHHH
Q 024915 98 GSPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKL---------------------NLRPRQVEVWFQNRRARSKL 156 (260)
Q Consensus 98 ~~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~l---------------------gLs~rqVkvWFQNRRak~Kk 156 (260)
+.+|.|+.|+..|+.+||..|..++||+..+|++||..| .|++.+|+|||||||+++|+
T Consensus 5 ~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~kr 84 (102)
T 2da6_A 5 SSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEAF 84 (102)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHHH
Confidence 467889999999999999999999999999999999999 79999999999999999986
Q ss_pred Hh
Q 024915 157 KQ 158 (260)
Q Consensus 157 ~~ 158 (260)
++
T Consensus 85 ~~ 86 (102)
T 2da6_A 85 RQ 86 (102)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 64
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.65 E-value=2.6e-17 Score=119.20 Aligned_cols=56 Identities=38% Similarity=0.595 Sum_probs=52.9
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHhh
Q 024915 104 LRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQT 159 (260)
Q Consensus 104 t~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~~ 159 (260)
..+|..|+..||..|..++||+..+|.+||..+||+++||+|||||||+|+|+++.
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhh
Confidence 35799999999999999999999999999999999999999999999999998654
No 65
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.65 E-value=3e-17 Score=137.58 Aligned_cols=63 Identities=30% Similarity=0.456 Sum_probs=52.3
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHhh
Q 024915 97 GGSPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQT 159 (260)
Q Consensus 97 ~~~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~~ 159 (260)
.+.+|+|++|+..|+.+||..|..++||+..+|.+||..+||+++||+|||||||+|+|+...
T Consensus 97 ~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 97 GRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred ccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 446788999999999999999999999999999999999999999999999999999998654
No 66
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.65 E-value=2e-17 Score=117.96 Aligned_cols=49 Identities=29% Similarity=0.491 Sum_probs=46.2
Q ss_pred HHHHHHHHHHH-hhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHH
Q 024915 108 KPQFATLEDTF-KEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKL 156 (260)
Q Consensus 108 ~~Ql~~Le~~F-~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk 156 (260)
..|+.+||..| ..++||+..+|.+||++|||+++||+|||||||+|+|+
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 46899999999 57999999999999999999999999999999999986
No 67
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.64 E-value=8.5e-17 Score=132.91 Aligned_cols=59 Identities=24% Similarity=0.412 Sum_probs=56.7
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHH
Q 024915 98 GSPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKL 156 (260)
Q Consensus 98 ~~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk 156 (260)
+.+|+|++|+..|+.+||..|..++||+..++.+||.++||+++||+|||||||+|+|+
T Consensus 92 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 92 KKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 46788999999999999999999999999999999999999999999999999999986
No 68
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=5.3e-17 Score=115.81 Aligned_cols=53 Identities=19% Similarity=0.254 Sum_probs=50.1
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHH
Q 024915 104 LRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKL 156 (260)
Q Consensus 104 t~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk 156 (260)
..++.+|+..||..|..++||+..+|.+||.++||+++||+|||||||+|.++
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 45678999999999999999999999999999999999999999999999875
No 69
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.63 E-value=6e-17 Score=125.13 Aligned_cols=62 Identities=19% Similarity=0.399 Sum_probs=54.3
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHH------------------hC---CCCcceeecccchhHHHHH
Q 024915 98 GSPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEK------------------LN---LRPRQVEVWFQNRRARSKL 156 (260)
Q Consensus 98 ~~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~------------------lg---Ls~rqVkvWFQNRRak~Kk 156 (260)
+.+|.|+.|+..|+.+||..|..++||+..+|++||.. || |++.+|+|||||||+++|+
T Consensus 8 k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k~ 87 (99)
T 1lfb_A 8 KGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAF 87 (99)
T ss_dssp -----CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHHH
Confidence 46788999999999999999999999999999999999 88 9999999999999999987
Q ss_pred Hhh
Q 024915 157 KQT 159 (260)
Q Consensus 157 ~~~ 159 (260)
++.
T Consensus 88 k~~ 90 (99)
T 1lfb_A 88 RHK 90 (99)
T ss_dssp CC-
T ss_pred hch
Confidence 764
No 70
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.61 E-value=1.7e-16 Score=114.01 Aligned_cols=61 Identities=25% Similarity=0.212 Sum_probs=51.1
Q ss_pred ccCCHHHHHHHHHHHh---hCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHhhHHHHH
Q 024915 104 LRLTKPQFATLEDTFK---EHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQTEVECE 164 (260)
Q Consensus 104 t~~t~~Ql~~Le~~F~---~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~~~~~~e 164 (260)
.+|+.+|+.+|+..|. .++||+..++.+||..+||+++||++||||||+|+|+...+..++
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~~~ 66 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNR 66 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC------
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHhcc
Confidence 3799999999999999 999999999999999999999999999999999999887776654
No 71
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.61 E-value=1.8e-16 Score=131.67 Aligned_cols=60 Identities=30% Similarity=0.424 Sum_probs=56.8
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHH
Q 024915 98 GSPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLK 157 (260)
Q Consensus 98 ~~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~ 157 (260)
+.+|+|++|+..|+..||..|..++||+..++.+||..+||+++||+|||||||+|+|+.
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 467889999999999999999999999999999999999999999999999999999963
No 72
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.59 E-value=3.2e-16 Score=130.91 Aligned_cols=62 Identities=29% Similarity=0.320 Sum_probs=54.7
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHh
Q 024915 97 GGSPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQ 158 (260)
Q Consensus 97 ~~~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~ 158 (260)
.+.+|+|+.|+..|+..||..|..++||+..+|.+||.++||+++||+|||||||+|+|+..
T Consensus 95 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 95 NTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 34678899999999999999999999999999999999999999999999999999999754
No 73
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=4.9e-14 Score=101.42 Aligned_cols=47 Identities=15% Similarity=0.314 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHH
Q 024915 108 KPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARS 154 (260)
Q Consensus 108 ~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~ 154 (260)
++|+..|+.+|..+++|+.+++..||..+||+.++|+|||||||++.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~ 60 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQ 60 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhccccc
Confidence 57899999999999999999999999999999999999999999853
No 74
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.42 E-value=8e-14 Score=105.33 Aligned_cols=54 Identities=30% Similarity=0.307 Sum_probs=50.8
Q ss_pred ccCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHH
Q 024915 104 LRLTKPQFATLEDTFKE---HSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLK 157 (260)
Q Consensus 104 t~~t~~Ql~~Le~~F~~---~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~ 157 (260)
..|+.+++.+|+.+|.. ++||+..+|.+||.++||+++||++||||+|.|.|+.
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~ 66 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPD 66 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhH
Confidence 46899999999999987 9999999999999999999999999999999999864
No 75
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.40 E-value=2.6e-14 Score=122.68 Aligned_cols=59 Identities=20% Similarity=0.385 Sum_probs=53.7
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC---------------------CCCcceeecccchhHHHHH
Q 024915 98 GSPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLN---------------------LRPRQVEVWFQNRRARSKL 156 (260)
Q Consensus 98 ~~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lg---------------------Ls~rqVkvWFQNRRak~Kk 156 (260)
+.||.|+.|+..|+.+||..|..++||+..+|++||..++ |++.+|++||||||+++|.
T Consensus 114 k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k~ 193 (194)
T 1ic8_A 114 KGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAF 193 (194)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC-
T ss_pred cCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhhc
Confidence 4678899999999999999999999999999999999999 9999999999999999874
No 76
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.28 E-value=9.5e-13 Score=114.61 Aligned_cols=58 Identities=21% Similarity=0.382 Sum_probs=53.4
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC---------------------CCCcceeecccchhHHHH
Q 024915 98 GSPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLN---------------------LRPRQVEVWFQNRRARSK 155 (260)
Q Consensus 98 ~~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lg---------------------Ls~rqVkvWFQNRRak~K 155 (260)
+.||.|+.|++.|+.+||..|..++||+..+|++||..+| |++.+|++||||||++..
T Consensus 141 k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~~ 219 (221)
T 2h8r_A 141 KMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEA 219 (221)
T ss_dssp -CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTCC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhhh
Confidence 4678889999999999999999999999999999999988 889999999999998753
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.26 E-value=9.6e-13 Score=122.07 Aligned_cols=56 Identities=36% Similarity=0.582 Sum_probs=52.9
Q ss_pred CCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHH
Q 024915 100 PRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSK 155 (260)
Q Consensus 100 ~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~K 155 (260)
++.++.++..|+..||+.|..++||+..+|++||+++||+++||+|||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 45577899999999999999999999999999999999999999999999999976
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.92 E-value=2.4e-11 Score=77.00 Aligned_cols=23 Identities=39% Similarity=0.674 Sum_probs=19.5
Q ss_pred cceeecccchhHHHHHHhhHHHH
Q 024915 141 RQVEVWFQNRRARSKLKQTEVEC 163 (260)
Q Consensus 141 rqVkvWFQNRRak~Kk~~~~~~~ 163 (260)
+||+|||||||+|+|+++.+...
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~ 23 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDAR 23 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTT
T ss_pred CCceeccHHHHHHHHHHhHHHHH
Confidence 69999999999999988765443
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.65 E-value=0.011 Score=42.17 Aligned_cols=39 Identities=26% Similarity=0.429 Sum_probs=36.7
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccc
Q 024915 111 FATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQN 149 (260)
Q Consensus 111 l~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQN 149 (260)
...|+.+|...+.+.......|+.+..|+..||+-||--
T Consensus 18 ~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 18 IQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 478999999999999999999999999999999999953
No 80
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=92.74 E-value=0.085 Score=39.15 Aligned_cols=40 Identities=28% Similarity=0.428 Sum_probs=18.7
Q ss_pred hHHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024915 151 RARSKLKQTEVE----CELLKRCCEKLKDENKRLQREVQELKSM 190 (260)
Q Consensus 151 Rak~Kk~~~~~~----~e~l~~~~~~l~~en~~l~~e~~~l~~~ 190 (260)
|.|.|+++.+.+ .+.|...+..|..+...|++|+..|+.+
T Consensus 29 rSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~l 72 (87)
T 1hjb_A 29 KSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445554444332 2334444445555555555555555443
No 81
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=90.19 E-value=0.47 Score=34.38 Aligned_cols=34 Identities=35% Similarity=0.532 Sum_probs=17.7
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024915 151 RARSKLKQTEVECELLKRCCEKLKDENKRLQREVQEL 187 (260)
Q Consensus 151 Rak~Kk~~~~~~~e~l~~~~~~l~~en~~l~~e~~~l 187 (260)
|.|.|+++.+.+ +....+.|..||..|+.++..|
T Consensus 29 rSR~krk~r~~e---~~~r~~~L~~eN~~L~~~v~~L 62 (78)
T 1gu4_A 29 KSRDKAKMRNLE---TQHKVLELTAENERLQKKVEQL 62 (78)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 455555544433 2334455556666666655555
No 82
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=85.28 E-value=0.082 Score=38.82 Aligned_cols=43 Identities=9% Similarity=0.178 Sum_probs=29.7
Q ss_pred CccCCHHHHHHHHHHHhhC-CCCCHHHHHHHHHHhCCCCcceeecccc
Q 024915 103 KLRLTKPQFATLEDTFKEH-STLSPKQKQGLAEKLNLRPRQVEVWFQN 149 (260)
Q Consensus 103 Rt~~t~~Ql~~Le~~F~~~-~~ps~~~r~~LA~~lgLs~rqVkvWFQN 149 (260)
|..|+.++....-..+... .. ...++|+.+|++..+|..|.+.
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHHH
Confidence 3568888765554445322 21 2568999999999999999753
No 83
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=79.42 E-value=2.4 Score=32.22 Aligned_cols=50 Identities=22% Similarity=0.355 Sum_probs=38.3
Q ss_pred CCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHH
Q 024915 101 RKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRAR 153 (260)
Q Consensus 101 r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak 153 (260)
++|.++|.++...+-..+..+..... .++|+.+|++...|..|..+++..
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~g~~~~---~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEENPDLRK---GEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHCTTSCH---HHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred CcceeCCHHHHHHHHHHHHHCCCCcH---HHHHHHhCCCHHHHHHHHhchhhh
Confidence 45778999998777777655555543 368999999999999999877653
No 84
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=77.17 E-value=6.3 Score=27.02 Aligned_cols=28 Identities=32% Similarity=0.415 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024915 163 CELLKRCCEKLKDENKRLQREVQELKSM 190 (260)
Q Consensus 163 ~e~l~~~~~~l~~en~~l~~e~~~l~~~ 190 (260)
.+.|....+.|..+|..|..++..|+.+
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778899999999999888654
No 85
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=76.69 E-value=9.5 Score=25.67 Aligned_cols=31 Identities=32% Similarity=0.326 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024915 159 TEVECELLKRCCEKLKDENKRLQREVQELKS 189 (260)
Q Consensus 159 ~~~~~e~l~~~~~~l~~en~~l~~e~~~l~~ 189 (260)
++...+.|...+..|..+...|+.|+..|+.
T Consensus 27 Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 27 LEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555555555543
No 86
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=75.48 E-value=9.5 Score=26.03 Aligned_cols=29 Identities=38% Similarity=0.621 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024915 162 ECELLKRCCEKLKDENKRLQREVQELKSM 190 (260)
Q Consensus 162 ~~e~l~~~~~~l~~en~~l~~e~~~l~~~ 190 (260)
..+.|...+..|..+...|+.|+..|+.+
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555555555443
No 87
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=74.04 E-value=6.3 Score=26.17 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024915 160 EVECELLKRCCEKLKDENKRLQREVQELKSM 190 (260)
Q Consensus 160 ~~~~e~l~~~~~~l~~en~~l~~e~~~l~~~ 190 (260)
..+.+.|+..++.|+.++..|+++++++++.
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888888888888888888888653
No 88
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=73.20 E-value=8.9 Score=26.19 Aligned_cols=36 Identities=31% Similarity=0.477 Sum_probs=26.0
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024915 151 RARSKLKQTEVECELLKRCCEKLKDENKRLQREVQELKS 189 (260)
Q Consensus 151 Rak~Kk~~~~~~~e~l~~~~~~l~~en~~l~~e~~~l~~ 189 (260)
|.+.|++ ...+.|....+.|..+|..|+.++..|..
T Consensus 16 R~R~KKk---~~~~~le~~~~~L~~~N~~L~~~i~~L~~ 51 (63)
T 1ci6_A 16 RYRQKKR---AEQEALTGECKELEKKNEALKERADSLAK 51 (63)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443 34456778888999999999999988853
No 89
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=72.00 E-value=2 Score=28.37 Aligned_cols=45 Identities=18% Similarity=0.339 Sum_probs=30.6
Q ss_pred CccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeeccc
Q 024915 103 KLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQ 148 (260)
Q Consensus 103 Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQ 148 (260)
|..|+.++.......+... ........++|+++|+++.+|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 4568888876665444433 22111256899999999999999964
No 90
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=70.93 E-value=12 Score=27.34 Aligned_cols=51 Identities=25% Similarity=0.338 Sum_probs=28.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcCCCCCCCC
Q 024915 156 LKQTEVECELLKRCCEKLKDENKRLQREVQELKSMKLSGAPLYMKLPAPTL 206 (260)
Q Consensus 156 k~~~~~~~e~l~~~~~~l~~en~~l~~e~~~l~~~~~~~~~~~~~~p~~~~ 206 (260)
+.....-...+....+.|..||..|+.++.+|......--.+++++|..-+
T Consensus 31 R~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~~~ 81 (87)
T 1hjb_A 31 RDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEPLL 81 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHh
Confidence 333444455666677889999999999998884332211345556665433
No 91
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=70.55 E-value=11 Score=23.09 Aligned_cols=29 Identities=34% Similarity=0.393 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024915 161 VECELLKRCCEKLKDENKRLQREVQELKS 189 (260)
Q Consensus 161 ~~~e~l~~~~~~l~~en~~l~~e~~~l~~ 189 (260)
++++.|.+..+.-.+|..+|+++..+|..
T Consensus 7 ~ENekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 46677777777778888888888877754
No 92
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=70.08 E-value=15 Score=24.84 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024915 165 LLKRCCEKLKDENKRLQREVQEL 187 (260)
Q Consensus 165 ~l~~~~~~l~~en~~l~~e~~~l 187 (260)
.|....+.|..+|..|+.++..|
T Consensus 27 ~Le~~v~~L~~~n~~L~~ei~~L 49 (63)
T 2wt7_A 27 TLQAETDQLEDEKSALQTEIANL 49 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555544
No 93
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=69.08 E-value=13 Score=25.06 Aligned_cols=25 Identities=24% Similarity=0.322 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 024915 165 LLKRCCEKLKDENKRLQREVQELKS 189 (260)
Q Consensus 165 ~l~~~~~~l~~en~~l~~e~~~l~~ 189 (260)
.|....+.|..+|..|+.++..|..
T Consensus 26 ~Le~~v~~L~~~n~~L~~~v~~L~~ 50 (62)
T 1jnm_A 26 RLEEKVKTLKAQNSELASTANMLRE 50 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677777777777766643
No 94
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=68.80 E-value=16 Score=26.61 Aligned_cols=33 Identities=30% Similarity=0.357 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024915 158 QTEVECELLKRCCEKLKDENKRLQREVQELKSM 190 (260)
Q Consensus 158 ~~~~~~e~l~~~~~~l~~en~~l~~e~~~l~~~ 190 (260)
..-.+++.|....+.|.+|+..|++++++|+.+
T Consensus 43 eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~el 75 (83)
T 1uii_A 43 EALKENEKLHKEIEQKDNEIARLKKENKELAEV 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677888889999999999999999998766
No 95
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=68.13 E-value=14 Score=27.22 Aligned_cols=33 Identities=36% Similarity=0.351 Sum_probs=25.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024915 157 KQTEVECELLKRCCEKLKDENKRLQREVQELKS 189 (260)
Q Consensus 157 ~~~~~~~e~l~~~~~~l~~en~~l~~e~~~l~~ 189 (260)
..++.+...|+...+.|..|+.++.+|...++.
T Consensus 51 ~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~ 83 (90)
T 2wt7_B 51 HHLENEKTQLIQQVEQLKQEVSRLARERDAYKV 83 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667888888999999999998887754
No 96
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=67.55 E-value=16 Score=26.18 Aligned_cols=41 Identities=22% Similarity=0.308 Sum_probs=33.9
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024915 151 RARSKLKQTEVECELLKRCCEKLKDENKRLQREVQELKSMK 191 (260)
Q Consensus 151 Rak~Kk~~~~~~~e~l~~~~~~l~~en~~l~~e~~~l~~~~ 191 (260)
..|.+-..++...+.|...+..|..+...|++|+..|+.+-
T Consensus 33 krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 33 KAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667888888999999999999999999999987653
No 97
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=65.25 E-value=12 Score=22.38 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 024915 168 RCCEKLKDENKRLQREVQELKSMK 191 (260)
Q Consensus 168 ~~~~~l~~en~~l~~e~~~l~~~~ 191 (260)
.-.+.|..+|..|+.|+..|+.+.
T Consensus 7 ~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 7 AKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHh
Confidence 345688899999999999998763
No 98
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=64.98 E-value=12 Score=22.46 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 024915 168 RCCEKLKDENKRLQREVQELKSMK 191 (260)
Q Consensus 168 ~~~~~l~~en~~l~~e~~~l~~~~ 191 (260)
.-.+.|..+|..|+.|+..|+++.
T Consensus 8 ~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 8 XKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHH
Confidence 345678888899999998888763
No 99
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=64.42 E-value=7 Score=27.81 Aligned_cols=43 Identities=14% Similarity=0.192 Sum_probs=30.2
Q ss_pred CCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecc
Q 024915 100 PRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWF 147 (260)
Q Consensus 100 ~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWF 147 (260)
++.+..++.++....-..+... . -..++|+++|++...|..|.
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl~rW~ 59 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTLRGWC 59 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHHHHHH
Confidence 3456678988865555555432 2 24578999999999998886
No 100
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=63.69 E-value=2 Score=26.56 Aligned_cols=42 Identities=12% Similarity=0.179 Sum_probs=29.0
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchh
Q 024915 105 RLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRR 151 (260)
Q Consensus 105 ~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRR 151 (260)
.++.++...+...+... .+ ..+||+.+|++...|..|+....
T Consensus 5 ~~~~~~~~~i~~l~~~g--~s---~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG--HP---RQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp SSCTTHHHHHHHHHHTT--CC---HHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCCHHHHHHHHHHHHcC--CC---HHHHHHHHCCCHHHHHHHHHHcc
Confidence 35666655555555433 22 45789999999999999996543
No 101
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=62.68 E-value=25 Score=23.27 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024915 163 CELLKRCCEKLKDENKRLQREVQELKSM 190 (260)
Q Consensus 163 ~e~l~~~~~~l~~en~~l~~e~~~l~~~ 190 (260)
.+.|......|..||..|..++..|...
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566788999999999999888643
No 102
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=61.74 E-value=4.5 Score=24.38 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=28.2
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccc
Q 024915 105 RLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQN 149 (260)
Q Consensus 105 ~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQN 149 (260)
.++.++...+...+... .+ ..++|+.+|++...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~g--~s---~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN--VS---LHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT--CC---HHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC--CC---HHHHHHHHCcCHHHHHHHHhh
Confidence 56777765555555432 22 557899999999999999753
No 103
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=60.80 E-value=9 Score=29.97 Aligned_cols=52 Identities=12% Similarity=0.136 Sum_probs=39.0
Q ss_pred CCCCccCCHHHHHHHHHHH-hhCCCCCHHHHHHHHH-Hh--CCCCcceeecccchh
Q 024915 100 PRKKLRLTKPQFATLEDTF-KEHSTLSPKQKQGLAE-KL--NLRPRQVEVWFQNRR 151 (260)
Q Consensus 100 ~r~Rt~~t~~Ql~~Le~~F-~~~~~ps~~~r~~LA~-~l--gLs~rqVkvWFQNRR 151 (260)
+++|.++|.+|...+-..+ ..++..+..+....|. ++ +++..+|..|..|+-
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~ 61 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSKY 61 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHH
Confidence 5788999999999998888 6777777654433322 67 778888998986653
No 104
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=59.93 E-value=15 Score=24.79 Aligned_cols=38 Identities=21% Similarity=0.275 Sum_probs=28.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024915 153 RSKLKQTEVECELLKRCCEKLKDENKRLQREVQELKSM 190 (260)
Q Consensus 153 k~Kk~~~~~~~e~l~~~~~~l~~en~~l~~e~~~l~~~ 190 (260)
+.+-..++...+.|...+..|..+...|+.|+..|+.+
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556667788888999999999999998887644
No 105
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=58.31 E-value=7.4 Score=27.72 Aligned_cols=46 Identities=11% Similarity=0.156 Sum_probs=32.3
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHH
Q 024915 105 RLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSK 155 (260)
Q Consensus 105 ~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~K 155 (260)
.++..+..+|...|-... .-.++|..+|++...|+.+...-|.+.|
T Consensus 37 ~L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr 82 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRALR 82 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 477888888877654332 3567899999999999877764444433
No 106
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=57.63 E-value=33 Score=23.11 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=30.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024915 153 RSKLKQTEVECELLKRCCEKLKDENKRLQREVQELKSM 190 (260)
Q Consensus 153 k~Kk~~~~~~~e~l~~~~~~l~~en~~l~~e~~~l~~~ 190 (260)
+.....++...+.|...+..|..+...|+.++..|+.+
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445567777889999999999999999999998765
No 107
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=53.40 E-value=44 Score=22.25 Aligned_cols=28 Identities=32% Similarity=0.350 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024915 162 ECELLKRCCEKLKDENKRLQREVQELKS 189 (260)
Q Consensus 162 ~~e~l~~~~~~l~~en~~l~~e~~~l~~ 189 (260)
..+.|....+.|..+|..|+.++..|..
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~ 50 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRN 50 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777888999999999999998854
No 108
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=53.27 E-value=31 Score=25.87 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024915 162 ECELLKRCCEKLKDENKRLQREVQE 186 (260)
Q Consensus 162 ~~e~l~~~~~~l~~en~~l~~e~~~ 186 (260)
....|....+.|+.||.+|..|.+.
T Consensus 66 ~v~eLe~everL~~ENq~L~~e~~~ 90 (104)
T 3s9g_A 66 RVRELELELDRLRAENLQLLTENEL 90 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555566777777777766543
No 109
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=53.02 E-value=22 Score=26.76 Aligned_cols=47 Identities=13% Similarity=0.112 Sum_probs=35.3
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHH
Q 024915 105 RLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKL 156 (260)
Q Consensus 105 ~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk 156 (260)
.+++.|..++...|.... .-.++|..+|++...|+.|...-|.+.++
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 578888888888765432 24678999999999999998765555543
No 110
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=52.66 E-value=29 Score=24.24 Aligned_cols=30 Identities=27% Similarity=0.336 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024915 159 TEVECELLKRCCEKLKDENKRLQREVQELK 188 (260)
Q Consensus 159 ~~~~~e~l~~~~~~l~~en~~l~~e~~~l~ 188 (260)
++.....|....+.|..||..|+.++..|.
T Consensus 34 LE~~v~~le~~~~~l~~en~~Lr~~i~~L~ 63 (70)
T 1gd2_E 34 LETQVVTLKELHSSTTLENDQLRQKVRQLE 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455556667777777777777664
No 111
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=51.67 E-value=39 Score=24.92 Aligned_cols=44 Identities=16% Similarity=0.373 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hhhhcCCCCcCCCCCCCCcCCCCCcccc
Q 024915 164 ELLKRCCEKLKDENKRLQREVQELK-SMKLSGAPLYMKLPAPTLTVCPSCDEKL 216 (260)
Q Consensus 164 e~l~~~~~~l~~en~~l~~e~~~l~-~~~~~~~~~~~~~p~~~~~~c~sc~~~~ 216 (260)
+.+......|..+...++.++..+. .+..... ....||.|++.-
T Consensus 13 ~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~---------~g~~CPvCgs~l 57 (112)
T 1l8d_A 13 TTIEEERNEITQRIGELKNKIGDLKTAIEELKK---------AKGKCPVCGREL 57 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---------CSEECTTTCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------CCCCCCCCCCcC
Confidence 3344444455555555655555552 2222111 145799998754
No 112
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=50.71 E-value=24 Score=23.23 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024915 163 CELLKRCCEKLKDENKRLQREVQE 186 (260)
Q Consensus 163 ~e~l~~~~~~l~~en~~l~~e~~~ 186 (260)
++.|-++.+.|+.||--|++|++.
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~d 28 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELED 28 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHh
Confidence 355666777777777777777654
No 113
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=50.52 E-value=41 Score=24.37 Aligned_cols=32 Identities=28% Similarity=0.323 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024915 159 TEVECELLKRCCEKLKDENKRLQREVQELKSM 190 (260)
Q Consensus 159 ~~~~~e~l~~~~~~l~~en~~l~~e~~~l~~~ 190 (260)
.-.+++.|....+.+.+|..+|++++.+|+.+
T Consensus 36 aL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~el 67 (83)
T 1wlq_A 36 ALKENEKLHKEIEQKDSEIARLRKENKDLAEV 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33567778888888888888888888877655
No 114
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=50.45 E-value=18 Score=26.56 Aligned_cols=47 Identities=15% Similarity=0.064 Sum_probs=34.6
Q ss_pred CccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHH
Q 024915 103 KLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSK 155 (260)
Q Consensus 103 Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~K 155 (260)
...++..+..+|.-.+.-- .-.++|..||+++..|+.+..+-+.|..
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 3468999999998765322 2378999999999999988765444443
No 115
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=50.43 E-value=46 Score=21.13 Aligned_cols=28 Identities=36% Similarity=0.444 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024915 158 QTEVECELLKRCCEKLKDENKRLQREVQ 185 (260)
Q Consensus 158 ~~~~~~e~l~~~~~~l~~en~~l~~e~~ 185 (260)
+++.+...|.+....|++|..+|..|+.
T Consensus 21 qlerdeqnlekiianlrdeiarleneva 48 (52)
T 3he5_B 21 QLERDEQNLEKIIANLRDEIARLENEVA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHHHh
Confidence 4445555666677777777777777653
No 116
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=50.21 E-value=30 Score=24.64 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=12.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024915 156 LKQTEVECELLKRCCEKLKDENKRLQREV 184 (260)
Q Consensus 156 k~~~~~~~e~l~~~~~~l~~en~~l~~e~ 184 (260)
.+.++.....+....+.|..|++.|++++
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444434444444444444444443
No 117
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=49.97 E-value=43 Score=24.16 Aligned_cols=35 Identities=14% Similarity=0.232 Sum_probs=23.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024915 154 SKLKQTEVECELLKRCCEKLKDENKRLQREVQELK 188 (260)
Q Consensus 154 ~Kk~~~~~~~e~l~~~~~~l~~en~~l~~e~~~l~ 188 (260)
.-.+.++.....+....+.|..+|..|+.++++|+
T Consensus 52 ~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 52 AYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33455555555566666778888888888877764
No 118
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=49.63 E-value=20 Score=25.94 Aligned_cols=47 Identities=13% Similarity=0.294 Sum_probs=36.2
Q ss_pred CCCccCCHHHHHHHHHHHh-----hCCCCCHHHHHHHHHHhCC--CCcceeecc
Q 024915 101 RKKLRLTKPQFATLEDTFK-----EHSTLSPKQKQGLAEKLNL--RPRQVEVWF 147 (260)
Q Consensus 101 r~Rt~~t~~Ql~~Le~~F~-----~~~~ps~~~r~~LA~~lgL--s~rqVkvWF 147 (260)
+....++.+|+..|+..|. .+.+.+..+...+.+.+|+ +..+|+.+|
T Consensus 25 ~~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~ 78 (100)
T 2lv7_A 25 QRPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVII 78 (100)
T ss_dssp CSCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 3445789999999999996 4568999999988888875 455555555
No 119
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=49.50 E-value=33 Score=20.46 Aligned_cols=22 Identities=5% Similarity=0.197 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 024915 169 CCEKLKDENKRLQREVQELKSM 190 (260)
Q Consensus 169 ~~~~l~~en~~l~~e~~~l~~~ 190 (260)
-.+.|..+|..|+.|+..|+.+
T Consensus 8 KvEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 8 KLXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHH
Confidence 3457788888888888888766
No 120
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=49.44 E-value=7.9 Score=28.00 Aligned_cols=45 Identities=16% Similarity=0.143 Sum_probs=33.2
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHH
Q 024915 105 RLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSK 155 (260)
Q Consensus 105 ~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~K 155 (260)
.++..+..+|.-.+.-. ...++|..+|++...|+.+..+-+.|.+
T Consensus 27 ~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 27 GLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 58999999998864322 2367999999999999877765544444
No 121
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=49.16 E-value=29 Score=26.69 Aligned_cols=40 Identities=15% Similarity=0.374 Sum_probs=32.8
Q ss_pred CCccCCHHHHHHHHHHHh-----hCCCCCHHHHHHHHHHhCCCCc
Q 024915 102 KKLRLTKPQFATLEDTFK-----EHSTLSPKQKQGLAEKLNLRPR 141 (260)
Q Consensus 102 ~Rt~~t~~Ql~~Le~~F~-----~~~~ps~~~r~~LA~~lgLs~r 141 (260)
+|..+|.+|+..|+..|. .+.+.+..+...+.+.+|+.+.
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 456799999999999996 3568999998888888887654
No 122
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=48.88 E-value=13 Score=25.95 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=34.4
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHH
Q 024915 104 LRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKL 156 (260)
Q Consensus 104 t~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk 156 (260)
..++..+..+|...+. . ....++|..+|++...|+.+..+-+.|.+.
T Consensus 20 ~~Lt~~e~~vl~l~~~--g----~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 20 NQLTPRERDILKLIAQ--G----LPNKMIARRLDITESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp GGSCHHHHHHHHHHTT--T----CCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 4689999999988432 1 135679999999999999887655555443
No 123
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=47.94 E-value=17 Score=24.23 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=25.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024915 153 RSKLKQTEVECELLKRCCEKLKDENKRLQREVQELK 188 (260)
Q Consensus 153 k~Kk~~~~~~~e~l~~~~~~l~~en~~l~~e~~~l~ 188 (260)
-+...+-..+.+.+...++.|..||..|++++.+++
T Consensus 19 GY~~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 19 GYDEDEVNEFLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566777777888888899999988887764
No 124
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=47.47 E-value=6.7 Score=25.92 Aligned_cols=46 Identities=15% Similarity=-0.101 Sum_probs=32.8
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHH
Q 024915 105 RLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSK 155 (260)
Q Consensus 105 ~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~K 155 (260)
.+++.+..+|...|.... .-.++|..+|++...|+.|...-+.+.+
T Consensus 15 ~L~~~~r~il~l~~~~g~-----s~~eIA~~lgis~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLGL-----SYADAAAVCGCPVGTIRSRVARARDALL 60 (70)
T ss_dssp SSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 478888888888764331 2457899999999999887754444333
No 125
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=46.10 E-value=30 Score=25.84 Aligned_cols=46 Identities=20% Similarity=0.112 Sum_probs=33.6
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHH
Q 024915 105 RLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSK 155 (260)
Q Consensus 105 ~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~K 155 (260)
.+++.+..+|.-.|.... .-.++|..+|++...|+.+...-|.+.+
T Consensus 25 ~L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr 70 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGDLVE 70 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 477888888877754332 2467899999999999988875555544
No 126
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=45.20 E-value=42 Score=20.12 Aligned_cols=22 Identities=9% Similarity=0.100 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 024915 169 CCEKLKDENKRLQREVQELKSM 190 (260)
Q Consensus 169 ~~~~l~~en~~l~~e~~~l~~~ 190 (260)
-.+.|..+|..|+.|+..|+.+
T Consensus 9 KVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 9 KLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHH
Confidence 3457778888888888888765
No 127
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=44.23 E-value=0.52 Score=38.21 Aligned_cols=30 Identities=3% Similarity=0.027 Sum_probs=21.5
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCH
Q 024915 97 GGSPRKKLRLTKPQFATLEDTFKEHSTLSP 126 (260)
Q Consensus 97 ~~~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~ 126 (260)
.+.+|.|+.|+..|++.|+..|..+++|..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 356788999999999999999999999874
No 128
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=44.11 E-value=52 Score=27.76 Aligned_cols=32 Identities=31% Similarity=0.350 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024915 159 TEVECELLKRCCEKLKDENKRLQREVQELKSM 190 (260)
Q Consensus 159 ~~~~~e~l~~~~~~l~~en~~l~~e~~~l~~~ 190 (260)
.-.+++.|....+.|.+|...|++++.+|+.+
T Consensus 113 aLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeL 144 (209)
T 2wvr_A 113 ALKENEKLHKEIEQKDNEIARLKKENKELAEV 144 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888888888888887777654
No 129
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=43.54 E-value=15 Score=24.36 Aligned_cols=46 Identities=17% Similarity=0.156 Sum_probs=33.2
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHH
Q 024915 104 LRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSK 155 (260)
Q Consensus 104 t~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~K 155 (260)
..+++.+..+|...+. .+ ...++|..+|++...|+.+..+-+.+.+
T Consensus 10 ~~L~~~e~~il~~~~~--g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 10 PLLTKREREVFELLVQ--DK----TTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCHHHHHHHHHHTT--TC----CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHc--CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 4689999999988432 22 3457999999999999887765444443
No 130
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=43.47 E-value=43 Score=25.09 Aligned_cols=29 Identities=31% Similarity=0.437 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024915 161 VECELLKRCCEKLKDENKRLQREVQELKS 189 (260)
Q Consensus 161 ~~~e~l~~~~~~l~~en~~l~~e~~~l~~ 189 (260)
.+...+++..+.|..||.+|++++..|..
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~ 40 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEA 40 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888888999999888887753
No 131
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=43.41 E-value=15 Score=24.86 Aligned_cols=46 Identities=26% Similarity=0.329 Sum_probs=32.4
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHH
Q 024915 105 RLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKL 156 (260)
Q Consensus 105 ~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk 156 (260)
.+++.+..+|.-.+. .+ ...++|..+|++...|+.+..+-+.|.+.
T Consensus 16 ~L~~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 16 TLSERERQVLSAVVA--GL----PNKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HHCHHHHHHHHHHTT--TC----CHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 377888888877432 21 23579999999999999887655555443
No 132
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=43.31 E-value=25 Score=19.66 Aligned_cols=15 Identities=47% Similarity=0.775 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHH
Q 024915 173 LKDENKRLQREVQEL 187 (260)
Q Consensus 173 l~~en~~l~~e~~~l 187 (260)
|++.|.+|++|+..|
T Consensus 5 lkqknarlkqeiaal 19 (28)
T 3ra3_B 5 LKQKNARLKQEIAAL 19 (28)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHH
Confidence 445555666655544
No 133
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=41.78 E-value=27 Score=24.59 Aligned_cols=37 Identities=19% Similarity=0.330 Sum_probs=24.1
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHhhHH
Q 024915 111 FATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQTEV 161 (260)
Q Consensus 111 l~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~~~~ 161 (260)
+..++-.|..|+||+++--.+ | =.|||-+|+.+|.+.
T Consensus 18 vRiIkiLyQSNP~P~p~GTrq-a-------------RRNRRRRWR~RQrQI 54 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQ-A-------------RRNRRRRWRERQRQI 54 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHH-H-------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchH-H-------------HHHHHHHHHHHHHHH
Confidence 455666788999998652111 1 158999998766544
No 134
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=41.68 E-value=27 Score=26.78 Aligned_cols=36 Identities=22% Similarity=0.353 Sum_probs=23.3
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHhhH
Q 024915 111 FATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQTE 160 (260)
Q Consensus 111 l~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~~~ 160 (260)
+..++-.|..|+||..+- .+|- =.|||.||+.++.+
T Consensus 15 vRiIkiLyQSNPyP~peG-----------TRqa---RRNRRRRWR~RQrQ 50 (115)
T 2x7l_M 15 VRLIKFLYQSNPPPNPEG-----------TRQA---RRNRRRRWRERQRQ 50 (115)
T ss_dssp HHHHHHHHHSSCCCCCCC-----------CTTT---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCC-----------chhh---hHhHHHHHHHHHHH
Confidence 345566688999998651 1111 26999999876543
No 135
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=41.67 E-value=45 Score=21.93 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024915 158 QTEVECELLKRCCEKLKDENKRLQREVQ 185 (260)
Q Consensus 158 ~~~~~~e~l~~~~~~l~~en~~l~~e~~ 185 (260)
.++.+++.|+..++.|.++++.|+.++.
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666677777777777777766554
No 136
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=40.97 E-value=50 Score=18.85 Aligned_cols=25 Identities=36% Similarity=0.464 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 024915 166 LKRCCEKLKDENKRLQREVQELKSM 190 (260)
Q Consensus 166 l~~~~~~l~~en~~l~~e~~~l~~~ 190 (260)
|......|..||..|+..+.+|-+.
T Consensus 4 lnallasleaenkqlkakveellak 28 (31)
T 1p9i_A 4 LNALLASLEAENKQLKAKVEELLAK 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667889999999998888653
No 137
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=40.69 E-value=43 Score=23.57 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024915 158 QTEVECELLKRCCEKLKDENKRLQREV 184 (260)
Q Consensus 158 ~~~~~~e~l~~~~~~l~~en~~l~~e~ 184 (260)
.++...+.+....+.|..+|..|+.++
T Consensus 51 ~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 51 YMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444443
No 138
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=39.26 E-value=58 Score=19.53 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 024915 169 CCEKLKDENKRLQREVQELKSM 190 (260)
Q Consensus 169 ~~~~l~~en~~l~~e~~~l~~~ 190 (260)
-.+.|..+|..|+.|+..|+.+
T Consensus 9 KVEeLl~~n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 9 KGEEILSKLYHIENELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 3457788888888888888766
No 139
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=38.18 E-value=74 Score=22.87 Aligned_cols=12 Identities=33% Similarity=0.551 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHH
Q 024915 173 LKDENKRLQREV 184 (260)
Q Consensus 173 l~~en~~l~~e~ 184 (260)
|..||.+|+.|.
T Consensus 53 L~~en~qLk~E~ 64 (81)
T 2jee_A 53 LERENNHLKEQQ 64 (81)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555554
No 140
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=38.07 E-value=21 Score=26.96 Aligned_cols=43 Identities=14% Similarity=0.115 Sum_probs=29.4
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHH
Q 024915 105 RLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRAR 153 (260)
Q Consensus 105 ~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak 153 (260)
.+++.+..+|. .|-.. ..-.++|..+|++...|+.+...-|.+
T Consensus 109 ~L~~~~r~v~~-~~~~g-----~s~~EIA~~lgis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRG-----YSYREIATILSKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp HSCHHHHHHHH-HHTTT-----CCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 57777777777 44322 235678999999999998777543333
No 141
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=37.21 E-value=17 Score=24.17 Aligned_cols=49 Identities=8% Similarity=0.055 Sum_probs=32.6
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHH
Q 024915 105 RLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARS 154 (260)
Q Consensus 105 ~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~ 154 (260)
.+++.+..+|...|-...+- ...-.++|..+|++...|+.+...-+.+.
T Consensus 5 ~L~~~er~il~l~~~l~~~~-g~s~~eIA~~lgis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNT-DYTLEEVGKQFDVTRERIRQIEAKALRKL 53 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSS-CCCHHHHHHHHTCCHHHHHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHHccCCCC-CCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 47888889998887321110 11246789999999999987765444433
No 142
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=35.91 E-value=16 Score=25.80 Aligned_cols=47 Identities=17% Similarity=0.119 Sum_probs=34.2
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHH
Q 024915 104 LRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKL 156 (260)
Q Consensus 104 t~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk 156 (260)
..++..+..+|.-.+. .+. ..++|..+|++...|+.+..+-+.|.+.
T Consensus 28 ~~Lt~~e~~vl~l~~~--g~s----~~eIA~~l~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 28 EMLTEREMEILLLIAK--GYS----NQEIASASHITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp GGCCSHHHHHHHHHHT--TCC----TTHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred hcCCHHHHHHHHHHHc--CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 3589999999987543 222 3468999999999999888765555543
No 143
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=35.86 E-value=71 Score=19.15 Aligned_cols=21 Identities=14% Similarity=0.359 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 024915 170 CEKLKDENKRLQREVQELKSM 190 (260)
Q Consensus 170 ~~~l~~en~~l~~e~~~l~~~ 190 (260)
.+.|..+|..|+.|+..|+.+
T Consensus 10 vEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 10 LEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHH
Confidence 456777888888888888765
No 144
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=35.33 E-value=1.2e+02 Score=23.42 Aligned_cols=33 Identities=6% Similarity=0.015 Sum_probs=21.6
Q ss_pred CccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeeccc
Q 024915 103 KLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQ 148 (260)
Q Consensus 103 Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQ 148 (260)
...|+.+++..|... .. .+.+|++-..|+..+.
T Consensus 38 ~R~Y~~~dl~~l~~I------------~~-lr~~G~sL~eIk~~l~ 70 (142)
T 3gp4_A 38 VRKFGAEDLRWILFT------------RQ-MRRAGLSIEALIDYLA 70 (142)
T ss_dssp CBCBCHHHHHHHHHH------------HH-HHHTTCCHHHHHHHHH
T ss_pred CeeeCHHHHHHHHHH------------HH-HHHcCCCHHHHHHHHH
Confidence 457899999988554 22 3566666666665554
No 145
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=35.22 E-value=24 Score=25.53 Aligned_cols=46 Identities=15% Similarity=0.225 Sum_probs=30.2
Q ss_pred CccCCHHHHHHHHHHH-hhC-CCCCH-HHHHHHHHHhCCCCcceeeccc
Q 024915 103 KLRLTKPQFATLEDTF-KEH-STLSP-KQKQGLAEKLNLRPRQVEVWFQ 148 (260)
Q Consensus 103 Rt~~t~~Ql~~Le~~F-~~~-~~ps~-~~r~~LA~~lgLs~rqVkvWFQ 148 (260)
+.+|+.++....-..+ ... .+.+. ....++|..+|+++.+|..|..
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 4468888765444433 321 12222 3467899999999999999964
No 146
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=35.02 E-value=74 Score=24.37 Aligned_cols=73 Identities=8% Similarity=0.009 Sum_probs=44.1
Q ss_pred CccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024915 103 KLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQTEVECELLKRCCEKLKDENKRLQR 182 (260)
Q Consensus 103 Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~~~~~~e~l~~~~~~l~~en~~l~~ 182 (260)
...|+.+++..|... ...+.+|++...|+.++........ ....-.+.+....+.+.++..+|+.
T Consensus 36 ~R~Y~~~dl~~l~~I-------------~~lr~~G~sl~eI~~~l~~~~~~~~--~~~~~~~~l~~~~~~l~~~i~~L~~ 100 (135)
T 1q06_A 36 YRTYTQQHLNELTLL-------------RQARQVGFNLEESGELVNLFNDPQR--HSADVKRRTLEKVAEIERHIEELQS 100 (135)
T ss_dssp CEECCHHHHHHHHHH-------------HHHHHTTCCHHHHHHHHHHHHCTTC--CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeeeCHHHHHHHHHH-------------HHHHHCCCCHHHHHHHHHhhhcCCc--hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346999999888543 2246778888888877754322110 1122234555666667777777777
Q ss_pred HHHHHHhh
Q 024915 183 EVQELKSM 190 (260)
Q Consensus 183 e~~~l~~~ 190 (260)
....|..+
T Consensus 101 ~~~~L~~~ 108 (135)
T 1q06_A 101 MRDQLLAL 108 (135)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
No 147
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=34.72 E-value=22 Score=23.94 Aligned_cols=47 Identities=4% Similarity=-0.011 Sum_probs=33.1
Q ss_pred cCCHHHHHHHHHHHhhC--CCCCHHHHHHHHHHhCCCCcceeecccchhHHH
Q 024915 105 RLTKPQFATLEDTFKEH--STLSPKQKQGLAEKLNLRPRQVEVWFQNRRARS 154 (260)
Q Consensus 105 ~~t~~Ql~~Le~~F~~~--~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~ 154 (260)
.+++.+..+|...|-.. .-.+ -.++|..+|++...|+.|...-+.+.
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~s---~~eIA~~l~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREHT---LEEVGAYFGVTRERIRQIENKALRKL 58 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCC---HHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCCCC---HHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 47889999998888511 1122 35789999999999988775444333
No 148
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=33.57 E-value=92 Score=24.25 Aligned_cols=71 Identities=6% Similarity=0.071 Sum_probs=40.3
Q ss_pred CccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024915 103 KLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQTEVECELLKRCCEKLKDENKRLQR 182 (260)
Q Consensus 103 Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~~~~~~e~l~~~~~~l~~en~~l~~ 182 (260)
...|+.+++..|... . ..+.+|++-..|+..+...+.... ......+.+....+.|.++..+|++
T Consensus 52 ~R~Y~~~dl~~l~~I------------~-~lr~~G~sL~eIk~~l~~~~~~~~--~~~~~~~~l~~~~~~l~~~i~~L~~ 116 (148)
T 3gpv_A 52 DRIFNEEALKYLEMI------------L-CLKNTGMPIQKIKQFIDWSMEGDS--TILHRLKLMKQQEANVLQLIQDTEK 116 (148)
T ss_dssp CEEBCHHHHHHHHHH------------H-HHHTTTCCHHHHHHHHHHHHHCGG--GHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeecCHHHHHHHHHH------------H-HHHHcCCCHHHHHHHHHhhhcCCC--CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999888543 2 236677777777777764332111 1122233455555566666666666
Q ss_pred HHHHHH
Q 024915 183 EVQELK 188 (260)
Q Consensus 183 e~~~l~ 188 (260)
.+..+.
T Consensus 117 ~~~~L~ 122 (148)
T 3gpv_A 117 NLKKIQ 122 (148)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555553
No 149
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=32.88 E-value=69 Score=21.63 Aligned_cols=27 Identities=30% Similarity=0.215 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024915 159 TEVECELLKRCCEKLKDENKRLQREVQ 185 (260)
Q Consensus 159 ~~~~~e~l~~~~~~l~~en~~l~~e~~ 185 (260)
++...+.|...+..|..+...|+.++.
T Consensus 35 Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 35 LEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445666777777777777776653
No 150
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=32.47 E-value=28 Score=24.88 Aligned_cols=46 Identities=22% Similarity=0.241 Sum_probs=32.5
Q ss_pred CCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHH
Q 024915 102 KKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRAR 153 (260)
Q Consensus 102 ~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak 153 (260)
....||..+..+|.-.+.-. ...++|..||++.+.|+....+=+.|
T Consensus 26 ~~~~Lt~rE~~Vl~l~~~G~------s~~eIA~~L~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVEKGF------TNQEIADALHLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp ---CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 34579999999998876321 25679999999999998766554433
No 151
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=32.10 E-value=47 Score=28.93 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024915 158 QTEVECELLKRCCEKLKDENKRLQREVQELKS 189 (260)
Q Consensus 158 ~~~~~~e~l~~~~~~l~~en~~l~~e~~~l~~ 189 (260)
.+...++.|+.....++.|..+|++|++.|+.
T Consensus 65 ~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 65 SLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33344555666666777777777777777653
No 152
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=31.37 E-value=72 Score=23.37 Aligned_cols=51 Identities=20% Similarity=0.169 Sum_probs=26.1
Q ss_pred CCCCcceeecccchhHHHH-------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024915 137 NLRPRQVEVWFQNRRARSK-------LKQTEVECELLKRCCEKLKDENKRLQREVQEL 187 (260)
Q Consensus 137 gLs~rqVkvWFQNRRak~K-------k~~~~~~~e~l~~~~~~l~~en~~l~~e~~~l 187 (260)
||+..+|..|=|-||.-.- +.+...+.+.|......|..|.+.|+.|+.++
T Consensus 17 gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~ 74 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRL 74 (90)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666555543111 11122333445555556666666666666554
No 153
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=30.80 E-value=63 Score=22.82 Aligned_cols=27 Identities=41% Similarity=0.555 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024915 165 LLKRCCEKLKDENKRLQREVQELKSMK 191 (260)
Q Consensus 165 ~l~~~~~~l~~en~~l~~e~~~l~~~~ 191 (260)
.|+...+.|.+|+..|+.++++.+.++
T Consensus 54 ~Lq~~~~~L~~e~~~L~~~~~~~~~~~ 80 (82)
T 1am9_A 54 FLQHSNQKLKQENLSLRTAVHKSKSLK 80 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 456667788888888888888776653
No 154
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=30.02 E-value=1.1e+02 Score=23.83 Aligned_cols=31 Identities=19% Similarity=0.358 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024915 158 QTEVECELLKRCCEKLKDENKRLQREVQELK 188 (260)
Q Consensus 158 ~~~~~~e~l~~~~~~l~~en~~l~~e~~~l~ 188 (260)
......+.+.+..+.|.+++..|++++..|.
T Consensus 100 ~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 100 AAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555556666666555553
No 155
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=29.82 E-value=21 Score=22.44 Aligned_cols=39 Identities=15% Similarity=0.194 Sum_probs=26.5
Q ss_pred cCC--HHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeeccc
Q 024915 105 RLT--KPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQ 148 (260)
Q Consensus 105 ~~t--~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQ 148 (260)
.++ .++...+...+... . ...++|+.+|++...|..|+.
T Consensus 13 ~l~~~~~~~~~i~~l~~~g-~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 13 YVESEDDLVSVAHELAKMG-Y----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp EECSHHHHHHHHHHHHHTT-C----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 355 56655555555432 2 255789999999999998874
No 156
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=29.40 E-value=1.5e+02 Score=20.93 Aligned_cols=31 Identities=35% Similarity=0.490 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024915 161 VECELLKRCCEKLKDENKRLQREVQELKSMK 191 (260)
Q Consensus 161 ~~~e~l~~~~~~l~~en~~l~~e~~~l~~~~ 191 (260)
.+-|.||.....|.+.|.+|+.|+.-|+.+-
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3457888888899999999999988887663
No 157
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=28.91 E-value=89 Score=18.77 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024915 166 LKRCCEKLKDENKRLQREVQE 186 (260)
Q Consensus 166 l~~~~~~l~~en~~l~~e~~~ 186 (260)
.+...+.|+.+|..|..++..
T Consensus 12 ~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 12 HQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHHHh
Confidence 334445566666666665543
No 158
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=28.91 E-value=24 Score=27.41 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=19.1
Q ss_pred HHHHHHHhCCCCcceeecccchh
Q 024915 129 KQGLAEKLNLRPRQVEVWFQNRR 151 (260)
Q Consensus 129 r~~LA~~lgLs~rqVkvWFQNRR 151 (260)
...+|+.+|+++.+++.|+-..|
T Consensus 72 ~~~va~~lg~~~~~~RlW~~~~R 94 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWPMQAR 94 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEECCCC
T ss_pred HHHHHHHhCCCcccEEEEEeecC
Confidence 46789999999999999985443
No 159
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=28.43 E-value=64 Score=22.44 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024915 170 CEKLKDENKRLQREVQEL 187 (260)
Q Consensus 170 ~~~l~~en~~l~~e~~~l 187 (260)
...|..++..|..|+..|
T Consensus 38 v~~le~~~~~l~~en~~L 55 (70)
T 1gd2_E 38 VVTLKELHSSTTLENDQL 55 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444444
No 160
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=28.42 E-value=25 Score=24.62 Aligned_cols=48 Identities=6% Similarity=0.042 Sum_probs=34.0
Q ss_pred cCCHHHHHHHHHHHhhC--CCCCHHHHHHHHHHhCCCCcceeecccchhHHHH
Q 024915 105 RLTKPQFATLEDTFKEH--STLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSK 155 (260)
Q Consensus 105 ~~t~~Ql~~Le~~F~~~--~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~K 155 (260)
.+++.+..+|...|-.. .-. .-.++|..+|++...|+.|...-+.+.|
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~---s~~EIA~~lgis~~tV~~~~~ra~~kLr 67 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPK---TLEEVGQYFNVTRERIRQIEVKALRKLR 67 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC---CHHHHHHHHTCCHHHHHHHHHHHHHHHB
T ss_pred hCCHHHHHHHHHHHccCCCCCC---CHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 47888999998887421 112 2457899999999999988765444444
No 161
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=28.05 E-value=1.1e+02 Score=23.87 Aligned_cols=68 Identities=18% Similarity=0.180 Sum_probs=39.7
Q ss_pred CccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024915 103 KLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQTEVECELLKRCCEKLKDENKRLQR 182 (260)
Q Consensus 103 Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~~~~~~e~l~~~~~~l~~en~~l~~ 182 (260)
+..|+.+++..|... ...+.+|++-..|+..+..... ......+.|....+.|.++..+|+.
T Consensus 40 ~R~Y~~~dl~~l~~I-------------~~lr~~G~sl~~I~~~l~~~~~-----~~~~~~~~L~~q~~~L~~~i~~l~~ 101 (146)
T 3hh0_A 40 HRLYTKDDLYVLQQI-------------QSFKHLGFSLGEIQNIILQRDI-----ETEVFLRQMHFQREVLLAEQERIAK 101 (146)
T ss_dssp CEEBCHHHHHHHHHH-------------HHHHHTTCCHHHHHHHHTSSEE-----EHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEeeCHHHHHHHHHH-------------HHHHHcCCCHHHHHHHHHccCC-----CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999888543 2235667777777766654321 1112233445555566666666666
Q ss_pred HHHHHH
Q 024915 183 EVQELK 188 (260)
Q Consensus 183 e~~~l~ 188 (260)
.+..+.
T Consensus 102 ~l~~l~ 107 (146)
T 3hh0_A 102 VLSHMD 107 (146)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665554
No 162
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=27.95 E-value=1.6e+02 Score=20.88 Aligned_cols=31 Identities=26% Similarity=0.438 Sum_probs=16.4
Q ss_pred chhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 024915 149 NRRARSKLKQTEVECELLKRCCEKLKDENKR 179 (260)
Q Consensus 149 NRRak~Kk~~~~~~~e~l~~~~~~l~~en~~ 179 (260)
+||.+++-.+...+.++|++.-+.|..-..+
T Consensus 13 Rrrl~E~~~q~qaEl~sLrrT~~EL~~G~~K 43 (78)
T 3iv1_A 13 RWRMKEEMDRAQAELNALKRTEEDLKKGHQK 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhHH
Confidence 3556666666666666666554444433333
No 163
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=27.86 E-value=92 Score=22.00 Aligned_cols=61 Identities=10% Similarity=0.102 Sum_probs=36.7
Q ss_pred HHHHHHHhCCCCcceeecccchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024915 129 KQGLAEKLNLRPRQVEVWFQNRRARSKLKQTEVECELLKRCCEKLKDENKRLQREVQELKSM 190 (260)
Q Consensus 129 r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~~~~~~e~l~~~~~~l~~en~~l~~e~~~l~~~ 190 (260)
....++.+|++-..|+..+..+..... .....-.+.+....+.+.++..+|+.....+..+
T Consensus 8 ~I~~lr~lGfsL~eIk~~l~~~~~~~~-~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~ 68 (99)
T 1q08_A 8 FIRHARQLGFSLESIRELLSIRIDPEH-HTCQESKGIVQERLQEVEARIAELQSMQRSLQRL 68 (99)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHCGGG-CBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHhCCCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345578889999999988865432110 0112334456666666777777776666666443
No 164
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=27.52 E-value=35 Score=22.91 Aligned_cols=42 Identities=2% Similarity=-0.006 Sum_probs=32.6
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhH
Q 024915 104 LRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRA 152 (260)
Q Consensus 104 t~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRa 152 (260)
..++.+.+..+...... + ..+||+.+|++...|..|=.+++.
T Consensus 9 ~~~~g~~lr~~R~~~gl----t---q~elA~~~gvs~~tis~~E~G~~~ 50 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLSL----T---QKEASEIFGGGVNAFSRYEKGNAX 50 (73)
T ss_dssp CCCCHHHHHHHHHHTTC----C---HHHHHHHHCSCTTHHHHHHTTSSC
T ss_pred CCCCHHHHHHHHHHcCC----C---HHHHHHHhCcCHHHHHHHHcCCCC
Confidence 35788888888765432 2 467999999999999999987653
No 165
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=26.86 E-value=18 Score=25.09 Aligned_cols=44 Identities=23% Similarity=0.363 Sum_probs=33.6
Q ss_pred ccCCHHHHHHHHHHHh-----hCCCCCHHHHHHHHHHhCCCCcceeecc
Q 024915 104 LRLTKPQFATLEDTFK-----EHSTLSPKQKQGLAEKLNLRPRQVEVWF 147 (260)
Q Consensus 104 t~~t~~Ql~~Le~~F~-----~~~~ps~~~r~~LA~~lgLs~rqVkvWF 147 (260)
..++.+++..|...|. .+.+.+..+...+...+|++...|+.+|
T Consensus 19 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~ 67 (91)
T 2pmy_A 19 ADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVF 67 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHH
Confidence 4688899999999996 3557888888888888887666555555
No 166
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=26.80 E-value=1.1e+02 Score=18.35 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 024915 170 CEKLKDENKRLQREVQELKSM 190 (260)
Q Consensus 170 ~~~l~~en~~l~~e~~~l~~~ 190 (260)
.+.|..+|..|+.|+..|+.+
T Consensus 10 VEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 10 VEELASANYHLANAVARLAKA 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 456777777777777777654
No 167
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=26.44 E-value=22 Score=28.80 Aligned_cols=46 Identities=15% Similarity=0.136 Sum_probs=32.4
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHH
Q 024915 105 RLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSK 155 (260)
Q Consensus 105 ~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~K 155 (260)
.+++.+..+|...|-.. ....++|..+|++...|+.+...-|.+.|
T Consensus 187 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ra~~~Lr 232 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALERLR 232 (239)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 47788888888776432 23467899999999999877764444433
No 168
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=26.11 E-value=90 Score=17.25 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024915 166 LKRCCEKLKDENKRLQREVQEL 187 (260)
Q Consensus 166 l~~~~~~l~~en~~l~~e~~~l 187 (260)
|+.....|+-|.+.|+.|+..|
T Consensus 5 lkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 5 LKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHHHHHhcc
Confidence 3444455666666666666554
No 169
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=25.99 E-value=58 Score=25.52 Aligned_cols=39 Identities=23% Similarity=0.425 Sum_probs=30.5
Q ss_pred CccCCHHHHHHHHHHHh-----hCCCCCHHHHHHHHHHhCCCCc
Q 024915 103 KLRLTKPQFATLEDTFK-----EHSTLSPKQKQGLAEKLNLRPR 141 (260)
Q Consensus 103 Rt~~t~~Ql~~Le~~F~-----~~~~ps~~~r~~LA~~lgLs~r 141 (260)
++.||.+|+..|+..|. .+.+.+..+...+.+.+|+.+.
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 45 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPS 45 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCCC
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCChh
Confidence 35689999999999996 3557888888888888876543
No 170
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=25.89 E-value=1.4e+02 Score=21.47 Aligned_cols=19 Identities=32% Similarity=0.302 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024915 161 VECELLKRCCEKLKDENKR 179 (260)
Q Consensus 161 ~~~e~l~~~~~~l~~en~~ 179 (260)
.+.+.||..+..|.++++.
T Consensus 27 mEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 27 MEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444
No 171
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=25.88 E-value=36 Score=26.62 Aligned_cols=46 Identities=9% Similarity=-0.032 Sum_probs=30.9
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHH
Q 024915 105 RLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSK 155 (260)
Q Consensus 105 ~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~K 155 (260)
.++..+..+|.-.|-.. ..-.++|..+|++...|+.+...-|.+.|
T Consensus 140 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~tV~~~l~ra~~~Lr 185 (194)
T 1or7_A 140 SLPEDLRMAITLRELDG-----LSYEEIAAIMDCPVGTVRSRIFRAREAID 185 (194)
T ss_dssp HSCHHHHHHHHHHHTTC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHhHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 36777777776655432 12457899999999999887764444443
No 172
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=25.36 E-value=26 Score=25.96 Aligned_cols=26 Identities=15% Similarity=0.161 Sum_probs=22.3
Q ss_pred CCCCCCCCCccccCCCCCCCCCccCC
Q 024915 23 HDHQKKNGKKLILKDDQLLPSLTLGR 48 (260)
Q Consensus 23 ~~rql~~g~e~~l~~~~l~c~~~~~~ 48 (260)
..+++.+|+.|++.++.++|+.++..
T Consensus 79 ~~~~~~~g~~f~~~~~~~~C~~~~~~ 104 (114)
T 1j2o_A 79 VGEPTLMGGEFGDEDERLITRLENTQ 104 (114)
T ss_dssp SSCSSTTSSBCCCSSSCCCEEEECTT
T ss_pred cCCccCCCCeeEEcCCEeecchhhhc
Confidence 35788899999999999999988765
No 173
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=25.01 E-value=40 Score=27.92 Aligned_cols=47 Identities=19% Similarity=0.181 Sum_probs=34.4
Q ss_pred CccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHH
Q 024915 103 KLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSK 155 (260)
Q Consensus 103 Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~K 155 (260)
...+|+.+.++|.-.+.-. .-.++|..||++++.|+....|-+.|..
T Consensus 173 ~~~Lt~~e~~vl~~~~~g~------s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASKGK------TASVTANLTGINARTVQHYLDKARAKLD 219 (236)
T ss_dssp GGSCCHHHHHHHHHHHTTC------CHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 3469999999987754321 2467899999999999988776555544
No 174
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=24.94 E-value=35 Score=25.31 Aligned_cols=41 Identities=15% Similarity=0.210 Sum_probs=30.7
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccc
Q 024915 104 LRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQN 149 (260)
Q Consensus 104 t~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQN 149 (260)
..++.++...+...+... .+ ..++|+.+|++...|..|++.
T Consensus 5 ~~~s~~~r~~i~~~~~~G--~s---~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN--VS---LHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT--CC---HHHHHHHHTCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHcC--CC---HHHHHHHHCcCHHHHHHHHHc
Confidence 457888877766666533 22 457899999999999999864
No 175
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=24.84 E-value=13 Score=23.73 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCCcceeecccchh
Q 024915 129 KQGLAEKLNLRPRQVEVWFQNRR 151 (260)
Q Consensus 129 r~~LA~~lgLs~rqVkvWFQNRR 151 (260)
..+||+.+|++...|..|..+++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998765
No 176
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=24.59 E-value=92 Score=22.69 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=39.3
Q ss_pred CccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024915 103 KLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQTEVECELLKRCCEKLKDENKRLQR 182 (260)
Q Consensus 103 Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~~~~~~e~l~~~~~~l~~en~~l~~ 182 (260)
...|+.+++..|... .. .+.+|++...|+.++...-. ...+.+....+.+.++.++|+.
T Consensus 37 ~R~Y~~~dl~~l~~I------------~~-lr~~G~sl~~I~~~l~~~~~--------~~~~~l~~~~~~l~~~i~~l~~ 95 (108)
T 2vz4_A 37 HRRYSDADLDRLQQI------------LF-YRELGFPLDEVAALLDDPAA--------DPRAHLRRQHELLSARIGKLQK 95 (108)
T ss_dssp CEEBCHHHHHHHHHH------------HH-HHHTTCCHHHHHHHHTC-------------CCHHHHHHHHHHHHHHHHHH
T ss_pred CeecCHHHHHHHHHH------------HH-HHHCCCCHHHHHHHHhCCcH--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 346999999888543 22 36677777777777764211 1123455555666666677766
Q ss_pred HHHHHHh
Q 024915 183 EVQELKS 189 (260)
Q Consensus 183 e~~~l~~ 189 (260)
.+..+..
T Consensus 96 ~~~~l~~ 102 (108)
T 2vz4_A 96 MAAAVEQ 102 (108)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666543
No 177
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=24.10 E-value=32 Score=24.09 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=31.7
Q ss_pred cCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCCCcceeecc
Q 024915 105 RLTKPQFATLEDTFKE-----HSTLSPKQKQGLAEKLNLRPRQVEVWF 147 (260)
Q Consensus 105 ~~t~~Ql~~Le~~F~~-----~~~ps~~~r~~LA~~lgLs~rqVkvWF 147 (260)
.++.++...++..|.. +.+.+..+...+...+|++...|+.+|
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~ 49 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIW 49 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 4678899999999973 456888888877777887765555444
No 178
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=23.72 E-value=15 Score=23.69 Aligned_cols=24 Identities=8% Similarity=0.300 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCCcceeecccchhH
Q 024915 129 KQGLAEKLNLRPRQVEVWFQNRRA 152 (260)
Q Consensus 129 r~~LA~~lgLs~rqVkvWFQNRRa 152 (260)
..+||+.+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSETE 44 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCC
Confidence 467999999999999999987654
No 179
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=23.50 E-value=17 Score=23.28 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=20.4
Q ss_pred HHHHHHhCCCCcceeecccchhHHHH
Q 024915 130 QGLAEKLNLRPRQVEVWFQNRRARSK 155 (260)
Q Consensus 130 ~~LA~~lgLs~rqVkvWFQNRRak~K 155 (260)
.++|..+|+++..|+.+..+-+.|.+
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~ 42 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQ 42 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHC
Confidence 57899999999999988765555444
No 180
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=23.49 E-value=39 Score=25.30 Aligned_cols=41 Identities=5% Similarity=0.075 Sum_probs=29.6
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhH
Q 024915 105 RLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRA 152 (260)
Q Consensus 105 ~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRa 152 (260)
.++.+++..|..... .+ ..+||+.+|++...|..|-.+++.
T Consensus 70 ~~~~~~l~~~R~~~g----ls---q~~la~~~g~s~~~i~~~E~g~~~ 110 (133)
T 3o9x_A 70 TVAPEFIVKVRKKLS----LT---QKEASEIFGGGVNAFSRYEKGNAQ 110 (133)
T ss_dssp TCCHHHHHHHHHHTT----CC---HHHHHHHHCSCTTHHHHHHHTSSC
T ss_pred CCCHHHHHHHHHHcC----CC---HHHHHHHHCCCHHHHHHHHCCCCC
Confidence 356666766665433 22 457899999999999999987654
No 181
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=23.18 E-value=97 Score=25.65 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024915 166 LKRCCEKLKDENKRLQREVQE 186 (260)
Q Consensus 166 l~~~~~~l~~en~~l~~e~~~ 186 (260)
|+..++.|+.||+||+.|-.+
T Consensus 157 L~~~n~~LqkeNeRL~~E~n~ 177 (184)
T 3w03_C 157 NQAKNEHLQKENERLLRDWND 177 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455556666666655443
No 182
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=22.31 E-value=16 Score=23.81 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=20.8
Q ss_pred HHHHHHHhCCCCcceeecccchhH
Q 024915 129 KQGLAEKLNLRPRQVEVWFQNRRA 152 (260)
Q Consensus 129 r~~LA~~lgLs~rqVkvWFQNRRa 152 (260)
..+||+.+|++...|..|..+++.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 467999999999999999988765
No 183
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=22.27 E-value=31 Score=24.37 Aligned_cols=43 Identities=12% Similarity=0.099 Sum_probs=30.4
Q ss_pred cCCHHHHHHHHHHHh-----hCCCCCHHHHHHHHHHhCCCCcceeecc
Q 024915 105 RLTKPQFATLEDTFK-----EHSTLSPKQKQGLAEKLNLRPRQVEVWF 147 (260)
Q Consensus 105 ~~t~~Ql~~Le~~F~-----~~~~ps~~~r~~LA~~lgLs~rqVkvWF 147 (260)
.++.++...|+..|. .+.+.+..+...+...+|++...|+.+|
T Consensus 3 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~ 50 (95)
T 1c07_A 3 VVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIW 50 (95)
T ss_dssp SSCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHH
Confidence 367788999999986 3456888887777777777655554443
No 184
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=22.07 E-value=16 Score=24.93 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.2
Q ss_pred HHHHHHHhCCCCcceeecccchh
Q 024915 129 KQGLAEKLNLRPRQVEVWFQNRR 151 (260)
Q Consensus 129 r~~LA~~lgLs~rqVkvWFQNRR 151 (260)
..+||+.+|++...|..|..+++
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 46799999999999999998765
No 185
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=22.06 E-value=66 Score=27.06 Aligned_cols=47 Identities=17% Similarity=0.069 Sum_probs=35.4
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHH
Q 024915 104 LRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKL 156 (260)
Q Consensus 104 t~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk 156 (260)
..+++.+..+|.-.+.. + .-.++|..||+++..|++...+-|.|.|.
T Consensus 196 ~~L~~~erevl~L~~~G--~----s~~EIA~~L~iS~~TVk~~l~ra~~kL~~ 242 (258)
T 3clo_A 196 NILSEREKEILRCIRKG--L----SSKEIAATLYISVNTVNRHRQNILEKLSV 242 (258)
T ss_dssp TSSCHHHHHHHHHHHTT--C----CHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHHcC--C----CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 46899999998886422 2 24578999999999999888766655554
No 186
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=21.87 E-value=1.4e+02 Score=18.03 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 024915 169 CCEKLKDENKRLQREVQELKSM 190 (260)
Q Consensus 169 ~~~~l~~en~~l~~e~~~l~~~ 190 (260)
-.+.|..+|..|+.|+..|+.+
T Consensus 9 KVEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 9 KVEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 3445666666777777666654
No 187
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=21.69 E-value=80 Score=20.69 Aligned_cols=19 Identities=16% Similarity=0.263 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024915 169 CCEKLKDENKRLQREVQEL 187 (260)
Q Consensus 169 ~~~~l~~en~~l~~e~~~l 187 (260)
..+.|..+...|+.|+..|
T Consensus 23 ~~~~LE~~v~~L~~eN~~L 41 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTL 41 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544
No 188
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=21.57 E-value=18 Score=23.99 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCCcceeecccchhH
Q 024915 129 KQGLAEKLNLRPRQVEVWFQNRRA 152 (260)
Q Consensus 129 r~~LA~~lgLs~rqVkvWFQNRRa 152 (260)
..+||+.+|++...|..|..+++.
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~~ 49 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKSQ 49 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467999999999999999987653
No 189
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=21.57 E-value=73 Score=26.41 Aligned_cols=16 Identities=44% Similarity=0.586 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 024915 168 RCCEKLKDENKRLQRE 183 (260)
Q Consensus 168 ~~~~~l~~en~~l~~e 183 (260)
..++.|.+||+||+.|
T Consensus 168 a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 168 AKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3334444555555443
No 190
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=21.22 E-value=1.4e+02 Score=21.63 Aligned_cols=65 Identities=11% Similarity=0.205 Sum_probs=39.0
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024915 104 LRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQTEVECELLKRCCEKLKDENKRLQRE 183 (260)
Q Consensus 104 t~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~Kk~~~~~~~e~l~~~~~~l~~en~~l~~e 183 (260)
..|+.+++..|...- ..+.+|++...|+..+.+... ...+.|....+.|.++.++|+..
T Consensus 39 R~Y~~~dl~~l~~I~-------------~l~~~G~~l~~I~~~l~~~~~--------~~~~~l~~~~~~l~~~i~~l~~~ 97 (109)
T 1r8d_A 39 RLYSDADLERLQQIL-------------FFKEIGFRLDEIKEMLDHPNF--------DRKAALQSQKEILMKKKQRMDEM 97 (109)
T ss_dssp EEBCHHHHHHHHHHH-------------HHHHTTCCHHHHHHHHHCTTS--------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeCHHHHHHHHHHH-------------HHHHCCCCHHHHHHHHhCCCH--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999998886532 235566666666666544211 11235556666677777777776
Q ss_pred HHHHHh
Q 024915 184 VQELKS 189 (260)
Q Consensus 184 ~~~l~~ 189 (260)
++.+..
T Consensus 98 ~~~l~~ 103 (109)
T 1r8d_A 98 IQTIDR 103 (109)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666643
No 191
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=21.07 E-value=49 Score=24.36 Aligned_cols=26 Identities=12% Similarity=0.184 Sum_probs=21.6
Q ss_pred HHHHHHHhCCCCcceeecccchhHHH
Q 024915 129 KQGLAEKLNLRPRQVEVWFQNRRARS 154 (260)
Q Consensus 129 r~~LA~~lgLs~rqVkvWFQNRRak~ 154 (260)
|+.|+.+.|+++.+++.+|+.|--++
T Consensus 48 K~~I~~k~Gip~~qQrLif~Gk~LkD 73 (93)
T 3plu_A 48 KKVLSLQIGTQPNKIVLQKGGSVLKD 73 (93)
T ss_dssp HHHHHHHHTCCGGGEEEEETTEECCT
T ss_pred HHHHHHHhCCCHHHEEEEeCCEEccC
Confidence 66789999999999999998765443
No 192
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=21.07 E-value=77 Score=24.34 Aligned_cols=47 Identities=13% Similarity=0.090 Sum_probs=0.0
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeeccc
Q 024915 97 GGSPRKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQ 148 (260)
Q Consensus 97 ~~~~r~Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQ 148 (260)
++.......++.++...+...+.... ...++|+.+|++...|..|++
T Consensus 17 g~~~~~~~~~s~e~r~~ii~l~~~G~-----s~~~IA~~lgis~~TV~rwl~ 63 (159)
T 2k27_A 17 GGAFVNGRPLPEVVRQRIVDLAHQGV-----RPCDISRQLRVSHGCVSKILG 63 (159)
T ss_dssp CCTTSSSCSSCHHHHHHHHHHHHHTC-----CHHHHHHHHTCCSHHHHHHHC
T ss_pred CCcCCCCCCCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHH
No 193
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=20.74 E-value=33 Score=26.59 Aligned_cols=41 Identities=17% Similarity=0.197 Sum_probs=33.2
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHH
Q 024915 111 FATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRAR 153 (260)
Q Consensus 111 l~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak 153 (260)
+..-...|.+..| . .....||+..|++...|-.+|.||-.-
T Consensus 21 l~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK~~L 61 (194)
T 2q24_A 21 LAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTREAL 61 (194)
T ss_dssp HHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSHHHH
T ss_pred HHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCHHHH
Confidence 4555666888877 5 678889999999999999999997543
No 194
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=20.69 E-value=29 Score=23.81 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCCcceeecccchh
Q 024915 129 KQGLAEKLNLRPRQVEVWFQNRR 151 (260)
Q Consensus 129 r~~LA~~lgLs~rqVkvWFQNRR 151 (260)
..+||+.+|++...|..|..+++
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45789999999999999998765
No 195
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=20.23 E-value=19 Score=23.74 Aligned_cols=24 Identities=8% Similarity=0.300 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCCcceeecccchhH
Q 024915 129 KQGLAEKLNLRPRQVEVWFQNRRA 152 (260)
Q Consensus 129 r~~LA~~lgLs~rqVkvWFQNRRa 152 (260)
..+||+.+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSETE 44 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467999999999999999987553
No 196
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=20.18 E-value=57 Score=26.93 Aligned_cols=47 Identities=13% Similarity=0.028 Sum_probs=33.7
Q ss_pred CccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHH
Q 024915 103 KLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSK 155 (260)
Q Consensus 103 Rt~~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~K 155 (260)
...+|+.+..+|.-.+. . . .-.++|..||++++.|+...+|-+.|..
T Consensus 171 ~~~Lt~~e~~vl~~~~~--g-~---s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIAV--G-K---TMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCCCHHHHHHHHHHTT--T-C---CHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHc--C-C---CHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 34699999999876432 1 1 2467899999999999987765555443
No 197
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=20.05 E-value=27 Score=27.17 Aligned_cols=45 Identities=22% Similarity=0.208 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCcceeecccchhHHHH
Q 024915 106 LTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSK 155 (260)
Q Consensus 106 ~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~lgLs~rqVkvWFQNRRak~K 155 (260)
++..+..+|.-.|-..-. -.++|..+|+++..|+.+...-|.+.|
T Consensus 136 L~~~~r~vl~l~~~~g~s-----~~eIA~~lgis~~tV~~~l~ra~~~Lr 180 (184)
T 2q1z_A 136 LPEAQRALIERAFFGDLT-----HRELAAETGLPLGTIKSRIRLALDRLR 180 (184)
T ss_dssp SCHHHHHHHHHHHHSCCS-----SCCSTTTCCCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCC-----HHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 455555555544332211 124677788888888877764444443
Done!